Psyllid ID: psy4188

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MLKSKLRRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHcccHHHHHcccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccHHccccHHHHHHHcccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLKSKLRRYfqdendvdatapeikltkedLLISDIHSLVnsyrdtnftgrsiarifhgipspnfpaivfgrnrywrshmdQDFGLLCKLAARELIKLR
Flexible Loop (DISEMBL)
mlksklrryfqdendvdatapeikltkedlLISDIHSLVNSYRDTNFTGRSIARIfhgipspnfpaIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR
Low Complexity Region (SEG)
MLKSKLRRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR
Disordered region (IsUnstruct)
*********************EIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELI***
Disordered Region (DISOPRED)
*LKSKLRRYFQ******************LLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR
Disordered Region (DISEMBL)
MLKSKLRRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR
Disordered Region (DISPRO)
MLKSKLRRYFQDEN*********KLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKSKLRRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q75NR7	1216	ATP-dependent DNA helicas	yes	N/A	0.693	0.055	0.434	2e-10
O94761	1208	ATP-dependent DNA helicas	yes	N/A	0.979	0.079	0.364	4e-10
Q0WVW7	911	ATP-dependent DNA helicas	yes	N/A	0.928	0.099	0.344	2e-09

>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 28   EDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRN-RYWRSHMDQDFGLL 86
            ED +  D+  L++   +  F+GR++ARIFHGI SP +PA V+G + R+WR ++  DF  L
Sbjct: 1144 EDQIRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYGLDRRFWRKYLHLDFHAL 1203

Query: 87   CKLAARELI 95
              LA  EL+
Sbjct: 1204 MHLATEELL 1212

DNA-dependent ATPase (By similarity). May play a role in development of the palate and the limbs. May modulate chromosome segregation.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 11/107 (10%)

Query: 2    LKSKLRRYFQDENDV------DATAPEIKLTK----EDLLISDIHSLVNSYRDTNFTGRS 51
            LK  L RYF++E         DA  PE    +    ED +  DI   ++   +  F+ R+
Sbjct: 1100 LKDLLGRYFEEEEGQEPGGMEDAQGPEPGQARLQDWEDQVRCDIRQFLSLRPEEKFSSRA 1159

Query: 52   IARIFHGIPSPNFPAIVFGRN-RYWRSHMDQDFGLLCKLAARELIKL 97
            +ARIFHGI SP +PA V+G++ R+WR ++   F  L  LA  EL+++
Sbjct: 1160 VARIFHGIGSPCYPAQVYGQDRRFWRKYLHLSFHALVGLATEELLQV 1206

DNA-dependent ATPase. May modulate chromosome segregation.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 2   LKSKLRRYFQDENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPS 61
           L+S++  YF  +   D+  P         L +DI   + S R   FT R+IARI HG+ S
Sbjct: 809 LQSRIFDYFNGDEKCDS--PSKATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGS 866

Query: 62  PNFPAIVFGRNRYWRSHMDQDFGLLCKLAAREL 94
           P FP  V+ +  +W  +M+ DF ++ + A  EL
Sbjct: 867 PAFPNSVWSKTHFWGRYMNVDFRVIMEAAQTEL 899

3'-5' DNA helicase that may play a role in the repair of DNA.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
270004900	1373	RecQ4 [Tribolium castaneum]	0.989	0.070	0.489	5e-24
91079778	1368	PREDICTED: similar to rothmund-thomson s	0.989	0.070	0.489	5e-24
307206664	1553	ATP-dependent DNA helicase Q4 [Harpegnat	0.989	0.062	0.464	2e-21
332026607	1518	ATP-dependent DNA helicase Q4 [Acromyrme	0.969	0.062	0.485	3e-21
170042657	1527	rothmund-thomson syndrome DNA helicase r	0.989	0.063	0.438	2e-20
322798352	1309	hypothetical protein SINV_13455 [Solenop	0.979	0.073	0.464	6e-20
307178096	1534	ATP-dependent DNA helicase Q4 [Camponotu	0.979	0.062	0.45	7e-20
383866069	1494	PREDICTED: ATP-dependent DNA helicase Q4	0.989	0.064	0.448	9e-20
170068621	1093	rothmund-thomson syndrome DNA helicase r	0.989	0.088	0.438	9e-20
350396812	1542	PREDICTED: ATP-dependent DNA helicase Q4	0.989	0.062	0.45	1e-19

>gi|270004900|gb|EFA01348.1| RecQ4 [Tribolium castaneum]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 75/98 (76%), Gaps = 1/98 (1%)

Query: 2    LKSKLRRYFQDENDVDATA-PEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIP 60
            LK+K+R YF+  N ++A +  E +L  EDL++++I  L+ +YRD +FTGR++ARIFHGI 
Sbjct: 1115 LKTKIRDYFESPNPLEAISLKENQLVDEDLVVNNIRGLICTYRDNSFTGRAVARIFHGIS 1174

Query: 61   SPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR 98
            SPN+PA+++GR +YWR H++ DF  +CKLA +E++  R
Sbjct: 1175 SPNYPAVIWGRCKYWRCHINVDFHTICKLATKEILAYR 1212

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079778|ref|XP_967578.1| PREDICTED: similar to rothmund-thomson syndrome DNA helicase recq4 [Tribolium castaneum]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 75/98 (76%), Gaps = 1/98 (1%)

Query: 2    LKSKLRRYFQDENDVDATA-PEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIP 60
            LK+K+R YF+  N ++A +  E +L  EDL++++I  L+ +YRD +FTGR++ARIFHGI 
Sbjct: 1110 LKTKIRDYFESPNPLEAISLKENQLVDEDLVVNNIRGLICTYRDNSFTGRAVARIFHGIS 1169

Query: 61   SPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR 98
            SPN+PA+++GR +YWR H++ DF  +CKLA +E++  R
Sbjct: 1170 SPNYPAVIWGRCKYWRCHINVDFHTICKLATKEILAYR 1207

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206664|gb|EFN84636.1| ATP-dependent DNA helicase Q4 [Harpegnathos saltator]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 73/99 (73%), Gaps = 2/99 (2%)

Query: 2    LKSKLRRYFQDENDVDAT--APEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGI 59
            LK  +R+YFQ ++ +D    + + K+  E  + +D+ SLV  YRDT FTGR++ARIFHGI
Sbjct: 1455 LKDTIRKYFQSDSPLDNVDISFQDKVPNEHQIAADVRSLVLCYRDTKFTGRAVARIFHGI 1514

Query: 60   PSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR 98
             SPN+PA+++GR R+WR+H+  +F  +C++AA+E++ LR
Sbjct: 1515 QSPNYPAMIWGRCRFWRAHLAANFNGICRIAAKEILALR 1553

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026607|gb|EGI66716.1| ATP-dependent DNA helicase Q4 [Acromyrmex echinatior]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 70/101 (69%), Gaps = 6/101 (5%)

Query: 2    LKSKLRRYFQDENDVDATAPEI----KLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFH 57
            LK  +R YFQ ++ ++   P I    K+T E  +  D+ +L+  YRDT FTGR+IARIFH
Sbjct: 1420 LKDTIREYFQSDSSLND--PNISFQNKMTNEQQIAVDVRNLIICYRDTKFTGRAIARIFH 1477

Query: 58   GIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR 98
            GI SPN+PA+++ R R+WR H+  DF  +CK+AARE++ LR
Sbjct: 1478 GIQSPNYPALIWHRCRFWRIHIAADFNTICKIAAREILALR 1518

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170042657|ref|XP_001849034.1| rothmund-thomson syndrome DNA helicase recq4 [Culex quinquefasciatus] gi|167866161|gb|EDS29544.1| rothmund-thomson syndrome DNA helicase recq4 [Culex quinquefasciatus]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/98 (43%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 2    LKSKLRRYFQDENDVDAT-APEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIP 60
            LK  +R YFQ + DVD    PE   T +  L+SDI ++++ Y + NF+GR+IAR+FHG+ 
Sbjct: 1429 LKQIVRTYFQSDLDVDVELVPEPDDTPDTQLLSDIRTMIHRYPENNFSGRAIARVFHGVQ 1488

Query: 61   SPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR 98
            SPN+PA+++GR+ +WR+H   DF  + +LA  E++++R
Sbjct: 1489 SPNYPAVIWGRSNFWRAHTSVDFNRIVRLANAEIVRMR 1526

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798352|gb|EFZ20087.1| hypothetical protein SINV_13455 [Solenopsis invicta]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 70/99 (70%), Gaps = 3/99 (3%)

Query: 2    LKSKLRRYFQDE--NDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGI 59
            LK  +R YFQ +  N++D    + ++T E  + +D+ SL+  Y+DT FTGR++ARIFHGI
Sbjct: 1212 LKHTIREYFQLDSLNNLDINF-QNEVTNEQQIATDVRSLIIHYKDTKFTGRAVARIFHGI 1270

Query: 60   PSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR 98
             SPN+PAI++ R R+WR H+  DF  +CK+A +E++ LR
Sbjct: 1271 QSPNYPAIIWNRCRFWRVHIASDFNTICKIATKEILALR 1309

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178096|gb|EFN66923.1| ATP-dependent DNA helicase Q4 [Camponotus floridanus]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 72/100 (72%), Gaps = 4/100 (4%)

Query: 2    LKSKLRRYFQDE---NDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHG 58
            LK+ +R YFQ +   N+ D    + K+T E+ + +D+ +L+  YRDT FTGR++ARIFHG
Sbjct: 1436 LKNIIRDYFQSDSPLNNADIGFQD-KVTNEEQIAADVRNLIIRYRDTKFTGRAVARIFHG 1494

Query: 59   IPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR 98
            I SPN+PA+++ + R+WR H+  +F ++CK+A RE++ LR
Sbjct: 1495 IQSPNYPALIWSKCRFWRVHIAANFNVICKIATREILALR 1534

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866069|ref|XP_003708494.1| PREDICTED: ATP-dependent DNA helicase Q4-like [Megachile rotundata]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 2    LKSKLRRYFQDENDVDATA-PEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIP 60
            LK+ +R YF+ +  VD  A  ++K+  E  +  D+ +L+ SYRD NFTGR++ARIFHGI 
Sbjct: 1397 LKAIIRDYFEGKVLVDIDAIQQVKVENEAQIACDVRNLIVSYRDNNFTGRAVARIFHGIQ 1456

Query: 61   SPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR 98
            SPN+PA  + + R+WR+H+  +F  LC++A +E++ LR
Sbjct: 1457 SPNYPAYAWNKCRFWRAHLSCNFSTLCQIATKEILALR 1494

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170068621|ref|XP_001868938.1| rothmund-thomson syndrome DNA helicase recq4 [Culex quinquefasciatus] gi|167864601|gb|EDS27984.1| rothmund-thomson syndrome DNA helicase recq4 [Culex quinquefasciatus]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 2    LKSKLRRYFQDENDVDAT-APEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIP 60
            LK  +R YFQ + DVD    PE   T +  L+SDI ++++ Y + NF+GR+IAR+FHG+ 
Sbjct: 995  LKQIVRTYFQSDLDVDVELVPEPDDTPDTQLLSDIRTMIHRYPENNFSGRAIARVFHGVQ 1054

Query: 61   SPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR 98
            SPN+PA+++GR+ +WR+H   DF  + +LA  E++++R
Sbjct: 1055 SPNYPAVIWGRSNFWRAHTSVDFNRIVRLANAEIVRMR 1092

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396812|ref|XP_003484675.1| PREDICTED: ATP-dependent DNA helicase Q4-like [Bombus impatiens]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 3/100 (3%)

Query: 1    MLKSKLRRYFQDEN--DVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHG 58
             LK  +R YF+ +   D+D T   + +  E  +  D+ +L+ SYRD NFTGR++ARIFHG
Sbjct: 1444 QLKDVIRNYFEGKVLLDIDLTQQNV-MENEAQVACDVRNLIVSYRDNNFTGRAVARIFHG 1502

Query: 59   IPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR 98
            I SPN+PA ++ + R+WR+H+  DF  LC++A RE++ LR
Sbjct: 1503 IQSPNYPAYIWNKCRFWRAHISFDFNALCQIATREILALR 1542

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
FB|FBgn0040290	1579	RecQ4 "RecQ4" [Drosophila mela	0.989	0.061	0.438	3.2e-17
UNIPROTKB|F1RSP7	1204	RECQL4 "Uncharacterized protei	0.959	0.078	0.398	8.6e-13
UNIPROTKB|K7GSZ9	1209	RECQL4 "Uncharacterized protei	0.959	0.077	0.398	8.6e-13
UNIPROTKB|F1RV44	1227	RECQL4 "Uncharacterized protei	0.959	0.076	0.398	8.8e-13
UNIPROTKB|E2RDN3	1163	E2RDN3 "Uncharacterized protei	0.867	0.073	0.390	4.6e-12
UNIPROTKB|A5D786	1218	RECQL4 "RECQL4 protein" [Bos t	0.959	0.077	0.384	6.2e-12
UNIPROTKB|Q4JNX8	1500	RTS "RECQL4-helicase-like prot	0.857	0.056	0.383	3.5e-11
UNIPROTKB|Q33DM4	1503	recql4 "RecQ4 protein" [Xenopu	0.857	0.055	0.383	3.5e-11
RGD|1307732	1216	Recql4 "RecQ protein-like 4" [	0.693	0.055	0.463	7.2e-11
MGI|MGI:1931028	1216	Recql4 "RecQ protein-like 4" [	0.959	0.077	0.355	3.1e-10

FB|FBgn0040290 RecQ4 "RecQ4" [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 43/98 (43%), Positives = 64/98 (65%)

Query:     2 LKSKLRRYFQDENDVDATAP-EIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIP 60
             LK+ +R YF ++   D     E     ++ +I D+H+L+N Y D  FTGR+IARIFHGI 
Sbjct:  1481 LKAIVRNYFANDYPQDLELEIEPSNVPDENIIDDVHALINMYPDNTFTGRNIARIFHGIM 1540

Query:    61 SPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELIKLR 98
             SPN+PA+++GR ++WR+H+  DF  +  LA   +IK R
Sbjct:  1541 SPNYPAVIWGRCKFWRAHVKVDFNRILHLANMAIIKRR 1578

GO:0004386 "helicase activity" evidence=ISS

GO:0003678 "DNA helicase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS;IDA

GO:0006281 "DNA repair" evidence=ISS

GO:0006260 "DNA replication" evidence=ISS;IMP

GO:0006302 "double-strand break repair" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0045740 "positive regulation of DNA replication" evidence=IMP

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0006284 "base-excision repair" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0002164 "larval development" evidence=IMP

GO:0007307 "eggshell chorion gene amplification" evidence=IMP

GO:0036292 "DNA rewinding" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0043140 "ATP-dependent 3'-5' DNA helicase activity" evidence=IDA

GO:0032508 "DNA duplex unwinding" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI;IMP

UNIPROTKB|F1RSP7 RECQL4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 183 (69.5 bits), Expect = 8.6e-13, P = 8.6e-13
 Identities = 41/103 (39%), Positives = 65/103 (63%)

Query:     2 LKSKLRRYFQDEN----DVDATAPEI-KLTKEDL---LISDIHSLVNSYRDTNFTGRSIA 53
             LK+ LRRYF++E      +D   PE  + T +D    +  DI  L++S+ +  F+GR++A
Sbjct:  1098 LKALLRRYFEEEEAGPEGMDQQGPEPGQATLQDWEAQIRRDIRHLLSSWPEQQFSGRAVA 1157

Query:    54 RIFHGIPSPNFPAIVFGRNR-YWRSHMDQDFGLLCKLAARELI 95
             R+FHGI SP +PA V+GR+R +WR ++  +F  L  LA  E++
Sbjct:  1158 RVFHGIGSPRYPAQVYGRDRRFWRKYLHLNFHALMHLATEEIL 1200

GO:0005524 "ATP binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|K7GSZ9 RECQL4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 183 (69.5 bits), Expect = 8.6e-13, P = 8.6e-13
 Identities = 41/103 (39%), Positives = 65/103 (63%)

Query:     2 LKSKLRRYFQDEN----DVDATAPEI-KLTKEDL---LISDIHSLVNSYRDTNFTGRSIA 53
             LK+ LRRYF++E      +D   PE  + T +D    +  DI  L++S+ +  F+GR++A
Sbjct:  1103 LKALLRRYFEEEEAGPEGMDQQGPEPGQATLQDWEAQIRRDIRHLLSSWPEQQFSGRAVA 1162

Query:    54 RIFHGIPSPNFPAIVFGRNR-YWRSHMDQDFGLLCKLAARELI 95
             R+FHGI SP +PA V+GR+R +WR ++  +F  L  LA  E++
Sbjct:  1163 RVFHGIGSPRYPAQVYGRDRRFWRKYLHLNFHALMHLATEEIL 1205

GO:0005524 "ATP binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1RV44 RECQL4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 183 (69.5 bits), Expect = 8.8e-13, P = 8.8e-13
 Identities = 41/103 (39%), Positives = 65/103 (63%)

Query:     2 LKSKLRRYFQDEN----DVDATAPEI-KLTKEDL---LISDIHSLVNSYRDTNFTGRSIA 53
             LK+ LRRYF++E      +D   PE  + T +D    +  DI  L++S+ +  F+GR++A
Sbjct:  1121 LKALLRRYFEEEEAGPEGMDQQGPEPGQATLQDWEAQIRRDIRHLLSSWPEQQFSGRAVA 1180

Query:    54 RIFHGIPSPNFPAIVFGRNR-YWRSHMDQDFGLLCKLAARELI 95
             R+FHGI SP +PA V+GR+R +WR ++  +F  L  LA  E++
Sbjct:  1181 RVFHGIGSPRYPAQVYGRDRRFWRKYLHLNFHALMHLATEEIL 1223

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0045875 "negative regulation of sister chromatid cohesion" evidence=IEA

GO:0043473 "pigmentation" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RDN3 E2RDN3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 176 (67.0 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 34/87 (39%), Positives = 57/87 (65%)

Query:    11 QDENDVDATAPEIKLTKEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFG 70
             +DE  ++    +I+   ED +  D+H L++S+ D  F+GR++ARIFHGI SP +PA V+G
Sbjct:  1075 EDEQGLEPGQEKIQ-DWEDQVRQDVHRLLSSWPDQQFSGRAVARIFHGIGSPRYPAQVYG 1133

Query:    71 RNR-YWRSHMDQDFGLLCKLAARELIK 96
             R+R +WR  +   F  L ++A  E+++
Sbjct:  1134 RDRRFWRRFLHLSFQALMRIATEEILR 1160

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|A5D786 RECQL4 "RECQL4 protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 6.2e-12, P = 6.2e-12
 Identities = 40/104 (38%), Positives = 63/104 (60%)

Query:     2 LKSKLRRYFQDENDVDATA-----PEIKLTK----EDLLISDIHSLVNSYRDTNFTGRSI 52
             LK+ L  YF++E++          PE+   +    ED +  DI  L++S+ +  F+GR++
Sbjct:  1111 LKALLSHYFEEESEQPGGLETEDDPELGQDRLQDWEDQIRRDIRQLLSSWPEQRFSGRAV 1170

Query:    53 ARIFHGIPSPNFPAIVFGRNR-YWRSHMDQDFGLLCKLAARELI 95
             AR+FHGI SP +PA VFGR+R +WR ++   F  L  LA +EL+
Sbjct:  1171 ARVFHGIGSPCYPAQVFGRDRRFWRKYLHLSFPALMHLATQELL 1214

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0045875 "negative regulation of sister chromatid cohesion" evidence=IEA

GO:0043473 "pigmentation" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q4JNX8 RTS "RECQL4-helicase-like protein" [Xenopus laevis (taxid:8355)]

 Score = 169 (64.5 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 33/86 (38%), Positives = 57/86 (66%)

Query:    15 DVDATAPEIKLTK-EDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNR 73
             D D    +IK+ + +D + SD+   ++ + +  F+GR++ARIFHGI SP +PA V+GR+R
Sbjct:  1415 DPDEELQQIKVQEAKDQVRSDVRHFLSIHEEERFSGRALARIFHGIGSPCYPAQVYGRDR 1474

Query:    74 -YWRSHMDQDFGLLCKLAARELIKLR 98
              +WR ++  DF  +  L+  E+I+L+
Sbjct:  1475 RFWRKYIHLDFNEIMNLSKEEIIRLK 1500

GO:0000785 "chromatin" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0006270 "DNA replication initiation" evidence=IMP

UNIPROTKB|Q33DM4 recql4 "RecQ4 protein" [Xenopus laevis (taxid:8355)]

 Score = 169 (64.5 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 33/86 (38%), Positives = 57/86 (66%)

Query:    15 DVDATAPEIKLTK-EDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNR 73
             D D    +IK+ + +D + SD+   ++ + +  F+GR++ARIFHGI SP +PA V+GR+R
Sbjct:  1418 DPDEELQQIKVQEAKDQVRSDVRHFLSIHEEERFSGRALARIFHGIGSPCYPAQVYGRDR 1477

Query:    74 -YWRSHMDQDFGLLCKLAARELIKLR 98
              +WR ++  DF  +  L+  E+I+L+
Sbjct:  1478 RFWRKYIHLDFNEIMNLSKEEIIRLK 1503

GO:0000785 "chromatin" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006260 "DNA replication" evidence=IMP

GO:0035563 "positive regulation of chromatin binding" evidence=IMP

RGD|1307732 Recql4 "RecQ protein-like 4" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 32/69 (46%), Positives = 47/69 (68%)

Query:    28 EDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNR-YWRSHMDQDFGLL 86
             ED +  D+H L++   +  F+GR++ARIFHGI SP +PA VFG++R +WR ++  DF  L
Sbjct:  1144 EDQVRRDVHQLLSLRPEEKFSGRAVARIFHGIASPCYPAQVFGQDRRFWRKYLHLDFHAL 1203

Query:    87 CKLAARELI 95
               LA  EL+
Sbjct:  1204 MHLATEELL 1212

GO:0000405 "bubble DNA binding" evidence=ISO

GO:0000733 "DNA strand renaturation" evidence=ISO

GO:0001501 "skeletal system development" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006260 "DNA replication" evidence=ISO

GO:0006310 "DNA recombination" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA;ISO

GO:0032508 "DNA duplex unwinding" evidence=ISO

GO:0043140 "ATP-dependent 3'-5' DNA helicase activity" evidence=ISO

GO:0043473 "pigmentation" evidence=IEA;ISO

GO:0045875 "negative regulation of sister chromatid cohesion" evidence=IEA;ISO

GO:0048705 "skeletal system morphogenesis" evidence=IEA;ISO

MGI|MGI:1931028 Recql4 "RecQ protein-like 4" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 37/104 (35%), Positives = 60/104 (57%)

Query:     2 LKSKLRRYFQDEND-----VDATAPEIKLTK----EDLLISDIHSLVNSYRDTNFTGRSI 52
             +K+ +  YF++E +      D   P+   T+    ED +  D+  L++   +  F+GR++
Sbjct:  1109 VKTLVSYYFEEEEEEEETMTDTQGPKPGQTQLQDWEDQIRRDVRQLLSLRPEERFSGRAV 1168

Query:    53 ARIFHGIPSPNFPAIVFGRNR-YWRSHMDQDFGLLCKLAARELI 95
             ARIFHGI SP +PA V+G +R +WR ++  DF  L  LA  EL+
Sbjct:  1169 ARIFHGIASPCYPAQVYGLDRRFWRKYLHLDFHALMHLATEELL 1212

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000405 "bubble DNA binding" evidence=ISO

GO:0000733 "DNA strand renaturation" evidence=ISO

GO:0001501 "skeletal system development" evidence=IMP

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006260 "DNA replication" evidence=ISO

GO:0006310 "DNA recombination" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0032508 "DNA duplex unwinding" evidence=ISO

GO:0043140 "ATP-dependent 3'-5' DNA helicase activity" evidence=ISO

GO:0043473 "pigmentation" evidence=IMP

GO:0045875 "negative regulation of sister chromatid cohesion" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
KOG0351|consensus	941		97.79

>KOG0351|consensus

Probab=97.79  E-value=1.6e-06  Score=78.07  Aligned_cols=69  Identities=25%  Similarity=0.233  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHHhhccCCCchHHHHHHHHhcCCCCCCchHhhccchhhhhcccCCHHHHHHHHHHHHH
Q psy4188          27 KEDLLISDIHSLVNSYRDTNFTGRSIARIFHGIPSPNFPAIVFGRNRYWRSHMDQDFGLLCKLAARELI   95 (98)
Q Consensus        27 ~e~~ir~dIr~ll~~~~~~~ftgRaVARIfHGI~SP~yPa~~W~r~~fWr~~~~~dF~~i~~~At~Ell   95 (98)
                      +....+.+++..+.++++..+.||++++|+|++.||+||+..|+.+++|..+...+|+.++.++.+++.
T Consensus       869 l~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  937 (941)
T KOG0351|consen  869 LSDGVRGVVRIGIVTRDKDKFGGRAIRRIFQVIYSSRVQAVEKGVDRTLIQAQLERFNRAKKLNSESLQ  937 (941)
T ss_pred             cCCCceecccCCCcccccccccchhheeechhcccchhhHHHhccccHHHHhhhccccccccccchhhc
Confidence            456677788889999999999999999999999999999999999999999999999999999988864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00