Psyllid ID: psy4196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MSGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVS
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHcHHHHHHccccHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHcccccHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHEEEEEccHHcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEcHcHHHHHHHHHHccccccHHHHHEHEc
Coil and Loop (DISEMBL)
msgleesgipgqnFLREALTSCTDPLKAIEEFqldngillpslrqmlplldlhgvrrldfhnsvLEVEVTETLNLLLPSLRqmlplldlhgvrrldfHNSVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKksfplvrvkqlRPVVMAILRNTTHIDDKYLRVLVS
Flexible Loop (DISEMBL)
msgleesgipgqNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIkeigqkegrdrdrKLNEMlkksfplvrvkqlrPVVMAIlrntthiddkylrvlvs
Low Complexity Region (SEG)
MSGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGIllpslrqmlplldlHGVRRLDFHNSvlevevtetlnlllpslrqmlplldlHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVS
Disordered region (IsUnstruct)
*************FLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIK*****************LKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVL**
Disordered Region (DISOPRED)
********IPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVS****************LNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVS
Disordered Region (DISEMBL)
********IPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVS
Disordered Region (DISPRO)
*SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFHNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVxxxxxxxxxxxxxxxxxxxxxDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q9Y113	594	Negative elongation facto	yes	N/A	0.767	0.217	0.608	8e-50
Q8C4Y3	580	Negative elongation facto	yes	N/A	0.779	0.225	0.355	4e-24
Q8WX92	580	Negative elongation facto	yes	N/A	0.779	0.225	0.355	4e-24

>sp|Q9Y113|NELFB_DROME Negative elongation factor B OS=Drosophila melanogaster GN=NELF-B PE=1 SV=1

 Score =  196 bits (497), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 117/166 (70%), Gaps = 37/166 (22%)

Query: 2   SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
           +GLE+  IPGQ +LREALTSCTDPLKAIE FQL+NG+LLP                    
Sbjct: 13  TGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVLLP-------------------- 52

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
                            SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI E+GQKE 
Sbjct: 53  -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINEMGQKEP 95

Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
           R+RD+KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYL++LV
Sbjct: 96  RERDKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILV 141

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II.
Drosophila melanogaster (taxid: 7227)

>sp|Q8C4Y3|NELFB_MOUSE Negative elongation factor B OS=Mus musculus GN=Cobra1 PE=2 SV=2

 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 38/169 (22%)

Query: 1   MSGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDF 60
            +GL++ G+     L+E LT+CT+PLKAIE+FQ +NG+LLP                   
Sbjct: 2   FAGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLP------------------- 42

Query: 61  HNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQK- 119
                             SL+  LP LDLHG  RL+FH SV +ELRDKL+  +  I  + 
Sbjct: 43  ------------------SLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEG 84

Query: 120 EGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVS 168
           +  +R +KL ++L+KSF LV++  L+PVVM ++++   + +K L+++++
Sbjct: 85  KAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMA 133

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex. May be able to induce chromatin unfolding.

Mus musculus (taxid: 10090)

>sp|Q8WX92|NELFB_HUMAN Negative elongation factor B OS=Homo sapiens GN=COBRA1 PE=1 SV=1

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 38/169 (22%)

Query: 1   MSGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDF 60
            +GL++ G+     L+E LT+CT+PLKAIE+FQ +NG+LLP                   
Sbjct: 2   FAGLQDLGVANGEDLKETLTNCTEPLKAIEQFQTENGVLLP------------------- 42

Query: 61  HNSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQK- 119
                             SL+  LP LDLHG  RL+FH SV +ELRDKL+  +  I  + 
Sbjct: 43  ------------------SLQSALPFLDLHGTPRLEFHQSVFDELRDKLLERVSAIASEG 84

Query: 120 EGRDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLVS 168
           +  +R +KL ++L+KSF LV++  L+PVVM ++++   + +K L+++++
Sbjct: 85  KAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVMA 133

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex. May be able to induce chromatin unfolding.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
195447050	426	GK25347 [Drosophila willistoni] gi|19416	0.767	0.302	0.614	1e-48
195041727	598	GH12128 [Drosophila grimshawi] gi|193901	0.767	0.215	0.614	2e-48
195353509	592	GM17461 [Drosophila sechellia] gi|194127	0.767	0.217	0.608	2e-48
194896912	592	GG17612 [Drosophila erecta] gi|190650208	0.767	0.217	0.608	2e-48
195133298	587	GI16340 [Drosophila mojavensis] gi|19390	0.767	0.219	0.614	3e-48
194763164	591	GF21119 [Drosophila ananassae] gi|190618	0.767	0.218	0.602	3e-48
195398977	631	GJ15676 [Drosophila virilis] gi|19415052	0.767	0.204	0.614	3e-48
195480393	595	GE17513 [Drosophila yakuba] gi|194188770	0.767	0.216	0.608	4e-48
18857943	594	NELF-B [Drosophila melanogaster] gi|3837	0.767	0.217	0.608	4e-48
195163772	590	GL14601 [Drosophila persimilis] gi|19410	0.767	0.218	0.608	5e-48

>gi|195447050|ref|XP_002071042.1| GK25347 [Drosophila willistoni] gi|194167127|gb|EDW82028.1| GK25347 [Drosophila willistoni]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 117/166 (70%), Gaps = 37/166 (22%)

Query: 2   SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
           +GLE+  IPGQ +LREALTSCTDPLKAIE FQL+NG+LLP                    
Sbjct: 10  TGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVLLP-------------------- 49

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
                            SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI E+GQKE 
Sbjct: 50  -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINELGQKEP 92

Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
           R+RD+KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYLR+LV
Sbjct: 93  RERDKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLRILV 138

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195041727|ref|XP_001991305.1| GH12128 [Drosophila grimshawi] gi|193901063|gb|EDV99929.1| GH12128 [Drosophila grimshawi]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 117/166 (70%), Gaps = 37/166 (22%)

Query: 2   SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
           +GLE+  IPGQ FLREALTSCTDPLKAIE FQL+NG+LLP                    
Sbjct: 11  TGLEDVNIPGQAFLREALTSCTDPLKAIESFQLENGVLLP-------------------- 50

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
                            SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI ++GQKE 
Sbjct: 51  -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINDLGQKEP 93

Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
           R+RD+KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYLR+LV
Sbjct: 94  RERDKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLRILV 139

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195353509|ref|XP_002043247.1| GM17461 [Drosophila sechellia] gi|194127345|gb|EDW49388.1| GM17461 [Drosophila sechellia]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 117/166 (70%), Gaps = 37/166 (22%)

Query: 2   SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
           +GLE+  IPGQ +LREALTSCTDPLKAIE FQL+NG+LLP                    
Sbjct: 11  TGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVLLP-------------------- 50

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
                            SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI E+GQKE 
Sbjct: 51  -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINEMGQKES 93

Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
           R+RD+KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYL++LV
Sbjct: 94  RERDKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILV 139

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194896912|ref|XP_001978559.1| GG17612 [Drosophila erecta] gi|190650208|gb|EDV47486.1| GG17612 [Drosophila erecta]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 117/166 (70%), Gaps = 37/166 (22%)

Query: 2   SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
           +GLE+  IPGQ +LREALTSCTDPLKAIE FQL+NG+LLP                    
Sbjct: 11  TGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVLLP-------------------- 50

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
                            SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI E+GQKE 
Sbjct: 51  -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINEVGQKEP 93

Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
           R+RD+KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYL++LV
Sbjct: 94  RERDKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILV 139

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195133298|ref|XP_002011076.1| GI16340 [Drosophila mojavensis] gi|193907051|gb|EDW05918.1| GI16340 [Drosophila mojavensis]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 117/166 (70%), Gaps = 37/166 (22%)

Query: 2   SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
           +GLE+  IPGQ FLREALTSCTDPLKAIE FQL+NG+LLP                    
Sbjct: 10  TGLEDVNIPGQAFLREALTSCTDPLKAIESFQLENGVLLP-------------------- 49

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
                            SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI ++GQKE 
Sbjct: 50  -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINDLGQKEP 92

Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
           R+RD+KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYLR+LV
Sbjct: 93  RERDKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLRILV 138

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194763164|ref|XP_001963703.1| GF21119 [Drosophila ananassae] gi|190618628|gb|EDV34152.1| GF21119 [Drosophila ananassae]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 117/166 (70%), Gaps = 37/166 (22%)

Query: 2   SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
           +GLE+  IPGQ +LREALTSCTDPLKAIE FQL+NG+LLP                    
Sbjct: 10  TGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVLLP-------------------- 49

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
                            SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI ++GQKE 
Sbjct: 50  -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINDLGQKEA 92

Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
           R+RD+KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYL++LV
Sbjct: 93  RERDKKLKELLAKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILV 138

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398977|ref|XP_002058097.1| GJ15676 [Drosophila virilis] gi|194150521|gb|EDW66205.1| GJ15676 [Drosophila virilis]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 117/166 (70%), Gaps = 37/166 (22%)

Query: 2   SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
           +GLE+  IPGQ FLREALTSCTDPLKAIE FQL+NG+LLP                    
Sbjct: 9   TGLEDVNIPGQAFLREALTSCTDPLKAIESFQLENGVLLP-------------------- 48

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
                            SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI E+GQKE 
Sbjct: 49  -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINELGQKEP 91

Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
           R+R++KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYLR+LV
Sbjct: 92  REREKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLRILV 137

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195480393|ref|XP_002101246.1| GE17513 [Drosophila yakuba] gi|194188770|gb|EDX02354.1| GE17513 [Drosophila yakuba]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 117/166 (70%), Gaps = 37/166 (22%)

Query: 2   SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
           +GLE+  IPGQ +LREALTSCTDPLKAIE FQL+NG+LLP                    
Sbjct: 11  TGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVLLP-------------------- 50

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
                            SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI E+GQKE 
Sbjct: 51  -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINEMGQKEP 93

Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
           R+RD+KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYL++LV
Sbjct: 94  RERDKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILV 139

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18857943|ref|NP_572402.1| NELF-B [Drosophila melanogaster] gi|38372398|sp|Q9Y113.1|NELFB_DROME RecName: Full=Negative elongation factor B gi|5052608|gb|AAD38634.1|AF145659_1 BcDNA.GH10333 [Drosophila melanogaster] gi|7290825|gb|AAF46268.1| NELF-B [Drosophila melanogaster] gi|220943838|gb|ACL84462.1| CG32721-PA [synthetic construct] gi|220960322|gb|ACL92697.1| NELF-B-PA [synthetic construct]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 117/166 (70%), Gaps = 37/166 (22%)

Query: 2   SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
           +GLE+  IPGQ +LREALTSCTDPLKAIE FQL+NG+LLP                    
Sbjct: 13  TGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVLLP-------------------- 52

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
                            SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI E+GQKE 
Sbjct: 53  -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINEMGQKEP 95

Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
           R+RD+KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYL++LV
Sbjct: 96  RERDKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILV 141

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195163772|ref|XP_002022723.1| GL14601 [Drosophila persimilis] gi|194104746|gb|EDW26789.1| GL14601 [Drosophila persimilis]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 117/166 (70%), Gaps = 37/166 (22%)

Query: 2   SGLEESGIPGQNFLREALTSCTDPLKAIEEFQLDNGILLPSLRQMLPLLDLHGVRRLDFH 61
           +GLE+  IPGQ +LREALTSCTDPLKAIE FQL+NG+LLP                    
Sbjct: 10  TGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVLLP-------------------- 49

Query: 62  NSVLEVEVTETLNLLLPSLRQMLPLLDLHGVRRLDFHNSVLEELRDKLVSHIKEIGQKEG 121
                            SLR MLPLLDLHGVRRLDFH S++EELRDKL++HI E+GQKE 
Sbjct: 50  -----------------SLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINELGQKEP 92

Query: 122 RDRDRKLNEMLKKSFPLVRVKQLRPVVMAILRNTTHIDDKYLRVLV 167
           R+RD+KL E+L KSFP+VRVK LRPVVMAILRNT HIDDKYL++LV
Sbjct: 93  RERDKKLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILV 138

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
FB|FBgn0027553	594	NELF-B "NELF-B" [Drosophila me	0.464	0.131	0.769	4.4e-46
ZFIN|ZDB-GENE-040426-765	594	nelfb "negative elongation fac	0.470	0.132	0.430	3.6e-25
UNIPROTKB|F1RVX9	580	COBRA1 "Uncharacterized protei	0.470	0.136	0.4	1.9e-24
UNIPROTKB|D4A2H9	286	Cobra1 "Protein Cobra1" [Rattu	0.458	0.269	0.384	2.4e-24
UNIPROTKB|G5E5S2	580	COBRA1 "Uncharacterized protei	0.470	0.136	0.387	4.1e-24
UNIPROTKB|E2QX07	580	COBRA1 "Uncharacterized protei	0.470	0.136	0.387	4.1e-24
UNIPROTKB|Q8WX92	580	NELFB "Negative elongation fac	0.470	0.136	0.387	4.1e-24
MGI|MGI:1931035	580	Nelfb "negative elongation fac	0.470	0.136	0.387	4.1e-24
RGD|1307832	580	Nelfb "negative elongation fac	0.470	0.136	0.387	4.1e-24
UNIPROTKB|Q5ZLK9	577	COBRA1 "Uncharacterized protei	0.464	0.135	0.382	1.4e-23

FB|FBgn0027553 NELF-B "NELF-B" [Drosophila melanogaster (taxid:7227)]

 Score = 322 (118.4 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
 Identities = 60/78 (76%), Positives = 71/78 (91%)

Query:    90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVM 149
             HGVRRLDFH S++EELRDKL++HI E+GQKE R+RD+KL E+L KSFP+VRVK LRPVVM
Sbjct:    64 HGVRRLDFHTSLMEELRDKLIAHINEMGQKEPRERDKKLKELLVKSFPVVRVKSLRPVVM 123

Query:   150 AILRNTTHIDDKYLRVLV 167
             AILRNT HIDDKYL++LV
Sbjct:   124 AILRNTQHIDDKYLKILV 141

GO:0003729 "mRNA binding" evidence=ISS

GO:0007070 "negative regulation of transcription from RNA polymerase II promoter during mitosis" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0032021 "NELF complex" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

ZFIN|ZDB-GENE-040426-765 nelfb "negative elongation factor complex member B" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
 Identities = 34/79 (43%), Positives = 55/79 (69%)

Query:    90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGRDRDRKLNEMLKKSFPLVRVKQLRPVVM 149
             HG  RL+FH SV +ELRDKL+  +  I + +  DR  KL E+L+KSFPLV++  ++PVVM
Sbjct:    54 HGTPRLEFHQSVFDELRDKLMERVATIAEGKEEDRYVKLEELLEKSFPLVKMPSIQPVVM 113

Query:   150 AILRNTTHIDDKYLRVLVS 168
              +L++   + +K L+ +++
Sbjct:   114 QVLKHLPKVPEKKLKQVMA 132

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1RVX9 COBRA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 32/80 (40%), Positives = 56/80 (70%)

Query:    90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
             HG  RL+FH SV +ELRDKL+  +  I  + +  +R +KL E+L+KSF LV++  L+PVV
Sbjct:    54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEELLEKSFSLVKMPSLQPVV 113

Query:   149 MAILRNTTHIDDKYLRVLVS 168
             M ++++   + +K L+++++
Sbjct:   114 MCVMKHLPKVPEKKLKLVMA 133

GO:0032021 "NELF complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|D4A2H9 Cobra1 "Protein Cobra1" [Rattus norvegicus (taxid:10116)]

 Score = 160 (61.4 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 30/78 (38%), Positives = 52/78 (66%)

Query:    90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
             HG  RL+FH SV +ELRDKL+  +  I  + +  +R +KL ++L+KSF LV++  L+PVV
Sbjct:    54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113

Query:   149 MAILRNTTHIDDKYLRVL 166
             M ++++   +  K  +++
Sbjct:   114 MCVMKHLPKVVQKLTQMV 131

GO:0005634 "nucleus" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|G5E5S2 COBRA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
 Identities = 31/80 (38%), Positives = 56/80 (70%)

Query:    90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
             HG  RL+FH SV +ELRDKL+  +  I  + +  +R +KL ++L+KSF LV++  L+PVV
Sbjct:    54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113

Query:   149 MAILRNTTHIDDKYLRVLVS 168
             M ++++   + +K L+++++
Sbjct:   114 MCVMKHLPKVPEKKLKLVMA 133

GO:0032021 "NELF complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E2QX07 COBRA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 171 (65.3 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
 Identities = 31/80 (38%), Positives = 56/80 (70%)

Query:    90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
             HG  RL+FH SV +ELRDKL+  +  I  + +  +R +KL ++L+KSF LV++  L+PVV
Sbjct:    54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113

Query:   149 MAILRNTTHIDDKYLRVLVS 168
             M ++++   + +K L+++++
Sbjct:   114 MCVMKHLPKVPEKKLKLVMA 133

GO:0032021 "NELF complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q8WX92 NELFB "Negative elongation factor B" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
 Identities = 31/80 (38%), Positives = 56/80 (70%)

Query:    90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
             HG  RL+FH SV +ELRDKL+  +  I  + +  +R +KL ++L+KSF LV++  L+PVV
Sbjct:    54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113

Query:   149 MAILRNTTHIDDKYLRVLVS 168
             M ++++   + +K L+++++
Sbjct:   114 MCVMKHLPKVPEKKLKLVMA 133

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1931035 Nelfb "negative elongation factor complex member B, Cobra1" [Mus musculus (taxid:10090)]

 Score = 171 (65.3 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
 Identities = 31/80 (38%), Positives = 56/80 (70%)

Query:    90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
             HG  RL+FH SV +ELRDKL+  +  I  + +  +R +KL ++L+KSF LV++  L+PVV
Sbjct:    54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113

Query:   149 MAILRNTTHIDDKYLRVLVS 168
             M ++++   + +K L+++++
Sbjct:   114 MCVMKHLPKVPEKKLKLVMA 133

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

RGD|1307832 Nelfb "negative elongation factor complex member B" [Rattus norvegicus (taxid:10116)]

 Score = 171 (65.3 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
 Identities = 31/80 (38%), Positives = 56/80 (70%)

Query:    90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQK-EGRDRDRKLNEMLKKSFPLVRVKQLRPVV 148
             HG  RL+FH SV +ELRDKL+  +  I  + +  +R +KL ++L+KSF LV++  L+PVV
Sbjct:    54 HGTPRLEFHQSVFDELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVV 113

Query:   149 MAILRNTTHIDDKYLRVLVS 168
             M ++++   + +K L+++++
Sbjct:   114 MCVMKHLPKVPEKKLKLVMA 133

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0032021 "NELF complex" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q5ZLK9 COBRA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 163 (62.4 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
 Identities = 31/81 (38%), Positives = 57/81 (70%)

Query:    90 HGVRRLDFHNSVLEELRDKLVSHIKEIGQKEGR--DRDRKLNEMLKKSFPLVRVKQLRPV 147
             HG  RL+FH SV +ELR+KL+  +  I   EG+  +R +KL ++L+KSF LV++  ++PV
Sbjct:    54 HGTPRLEFHQSVFDELREKLLERVSAIAL-EGKVEERYKKLEDLLEKSFSLVKMPSIQPV 112

Query:   148 VMAILRNTTHIDDKYLRVLVS 168
             VM ++++   + +K L+++++
Sbjct:   113 VMCVMKHLPKVPEKKLKLVMA 133

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y113	NELFB_DROME	No assigned EC number	0.6084	0.7678	0.2171	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
pfam06209	475	pfam06209, COBRA1, Cofactor of BRCA1 (COBRA1)	6e-04

>gnl|CDD|218940 pfam06209, COBRA1, Cofactor of BRCA1 (COBRA1)

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 7/27 (25%), Positives = 19/27 (70%)

Query: 141 VKQLRPVVMAILRNTTHIDDKYLRVLV 167
           +  L+PVVM ++++   + +K L++++
Sbjct: 1   MPSLQPVVMCVMKHLPKVPEKKLKIVM 27

This family consists of several cofactor of BRCA1 (COBRA1) like proteins. It is thought that COBRA1 along with BRCA1 is involved in chromatin unfolding. COBRA1 is recruited to the chromosome site by the first BRCT repeat of BRCA1, and is itself sufficient to induce chromatin unfolding. BRCA1 mutations that enhance chromatin unfolding also increase its affinity for, and recruitment of, COBRA1. It is thought that that reorganisation of higher levels of chromatin structure is an important regulated step in BRCA1-mediated nuclear functions. Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 6e-04
 Identities = 29/191 (15%), Positives = 61/191 (31%), Gaps = 42/191 (21%)

Query: 12  QNFLREALTSCTDPLKAIEEFQ--LDNGILLPSLRQMLPLLD----LHGVRRLDFHNSVL 65
            N+   +  S    L+ I   Q  L   +        L +L            +    +L
Sbjct: 211 PNWTSRSDHSSNIKLR-IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 66  ----EVEVTETLNLLL---PSLRQMLPLLDLHGVRRL--DFHNSVLEELRDKLVS----H 112
                 +VT+ L+       SL      L    V+ L   + +   ++L  ++++     
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 113 IKEIGQ--KEGRDR-DR-------KLNEMLKKSFPLVRVKQLRPVVM-------AILRNT 155
           +  I +  ++G    D        KL  +++ S     +  L P          ++   +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-----LNVLEPAEYRKMFDRLSVFPPS 384

Query: 156 THIDDKYLRVL 166
            HI    L ++
Sbjct: 385 AHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00