Psyllid ID: psy4369

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MVTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRTVSRQGNH
Secondary Structure (PSIPRED)
ccHHHHHHHcccEEEHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccHcccEEEEEccccc
Coil and Loop (DISEMBL)
MVTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLvdstpeinnhsdtqervtprldrrkrtvsrqgnh
Flexible Loop (DISEMBL)
MVTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRlvdstpeinnhsdtqervtprldrrkrtvsrqgnh
Low Complexity Region (SEG)
MVTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRTVSRQGNH
Disordered region (IsUnstruct)
****HLATTCPFLLNFEIRQLLLYASSFDRDRA**************************************
Disordered Region (DISOPRED)
***EHLATTCPFLLNFEIRQLLLYASSFDRDRA**************************************
Disordered Region (DISEMBL)
MVTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRL*************
Disordered Region (DISPRO)
*VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDS****************R*DRRKRTVS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRTVSRQGNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q14669	1992	E3 ubiquitin-protein liga	yes	N/A	0.901	0.032	0.562	1e-16
E1B7Q7	1992	E3 ubiquitin-protein liga	yes	N/A	0.901	0.032	0.562	1e-16
F1LP64	2025	E3 ubiquitin-protein liga	yes	N/A	0.901	0.031	0.562	1e-16
G5E870	2025	E3 ubiquitin-protein liga	yes	N/A	0.901	0.031	0.562	1e-16
F1RCR6	2026	E3 ubiquitin-protein liga	yes	N/A	0.887	0.031	0.555	3e-16
B4F6W9	2056	E3 ubiquitin-protein liga	yes	N/A	0.887	0.030	0.555	3e-16

>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 46/64 (71%)

Query: 5    HLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRT 64
             L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN       RV PRLDR+KRT
Sbjct: 1533 ELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRT 1592

Query: 65   VSRQ 68
            V+R+
Sbjct: 1593 VNRE 1596

Component of PA700, an ATP-dependent multisubunit protein that activates the proteolytic activities of the multifunctional proteinase (20S proteasome) of the 26S complex. Specifically interacts with the ligand binding domain of the thyroid hormone receptor (in a thyroid hormone T3-independent manner) and with retinoid X receptor (RXR). Could be E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 46/64 (71%)

Query: 5    HLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRT 64
             L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN       RV PRLDR+KRT
Sbjct: 1533 ELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRT 1592

Query: 65   VSRQ 68
            V+R+
Sbjct: 1593 VNRE 1596

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 46/64 (71%)

Query: 5    HLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRT 64
             L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN       RV PRLDR+KRT
Sbjct: 1566 ELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRT 1625

Query: 65   VSRQ 68
            V+R+
Sbjct: 1626 VNRE 1629

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 46/64 (71%)

Query: 5    HLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRT 64
             L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN       RV PRLDR+KRT
Sbjct: 1566 ELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRT 1625

Query: 65   VSRQ 68
            V+R+
Sbjct: 1626 VNRE 1629

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 45/63 (71%)

Query: 5    HLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRT 64
             L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN       RV PRLDR+KRT
Sbjct: 1567 ELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRT 1626

Query: 65   VSR 67
            ++R
Sbjct: 1627 INR 1629

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 46/63 (73%)

Query: 6    LATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRTV 65
            L  +CPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN       RV PRLDR+KRTV
Sbjct: 1598 LGKSCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTV 1657

Query: 66   SRQ 68
            +R+
Sbjct: 1658 NRE 1660

E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardeless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of 'Lys-63'-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
380026103	1988	PREDICTED: LOW QUALITY PROTEIN: probable	0.887	0.031	0.734	1e-19
328784329	1987	PREDICTED: probable E3 ubiquitin-protein	0.887	0.031	0.734	1e-19
383859419	2059	PREDICTED: probable E3 ubiquitin-protein	0.887	0.030	0.734	1e-19
350422298	2040	PREDICTED: probable E3 ubiquitin-protein	0.887	0.030	0.734	1e-19
340714421	2072	PREDICTED: probable E3 ubiquitin-protein	0.887	0.030	0.734	1e-19
307209299	2064	Probable E3 ubiquitin-protein ligase TRI	0.887	0.030	0.734	1e-19
340714423	2059	PREDICTED: probable E3 ubiquitin-protein	0.887	0.030	0.734	1e-19
345483811	2183	PREDICTED: probable E3 ubiquitin-protein	0.887	0.028	0.718	3e-19
322795581	1839	hypothetical protein SINV_16586 [Solenop	0.887	0.034	0.718	3e-19
321469860	1714	hypothetical protein DAPPUDRAFT_50916 [D	0.901	0.037	0.687	7e-19

>gi|380026103|ref|XP_003696799.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase TRIP12-like [Apis florea]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%), Gaps = 1/64 (1%)

Query: 4    EHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKR 63
            + +AT CPFL  FE RQLLLYA+SFDRDRALQRL+DS PE++  SD+QERVTPRL+RRKR
Sbjct: 1619 QQIATVCPFLFPFETRQLLLYATSFDRDRALQRLLDSAPELSG-SDSQERVTPRLERRKR 1677

Query: 64   TVSR 67
            T+SR
Sbjct: 1678 TISR 1681

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784329|ref|XP_392897.4| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like [Apis mellifera]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%), Gaps = 1/64 (1%)

Query: 4    EHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKR 63
            + +AT CPFL  FE RQLLLYA+SFDRDRALQRL+DS PE++  SD+QERVTPRL+RRKR
Sbjct: 1618 QQIATVCPFLFPFETRQLLLYATSFDRDRALQRLLDSAPELSG-SDSQERVTPRLERRKR 1676

Query: 64   TVSR 67
            T+SR
Sbjct: 1677 TISR 1680

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859419|ref|XP_003705192.1| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like [Megachile rotundata]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%), Gaps = 1/64 (1%)

Query: 4    EHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKR 63
            + +AT CPFL  FE RQLLLYA+SFDRDRALQRL+DS PE++  SD+QERVTPRL+RRKR
Sbjct: 1617 QQIATVCPFLFPFETRQLLLYATSFDRDRALQRLLDSAPELSG-SDSQERVTPRLERRKR 1675

Query: 64   TVSR 67
            T+SR
Sbjct: 1676 TISR 1679

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422298|ref|XP_003493120.1| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like [Bombus impatiens]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%), Gaps = 1/64 (1%)

Query: 4    EHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKR 63
            + +AT CPFL  FE RQLLLYA+SFDRDRALQRL+DS PE++  SD+QERVTPRL+RRKR
Sbjct: 1619 QQIATVCPFLFPFETRQLLLYATSFDRDRALQRLLDSAPELSG-SDSQERVTPRLERRKR 1677

Query: 64   TVSR 67
            T+SR
Sbjct: 1678 TISR 1681

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714421|ref|XP_003395727.1| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like isoform 1 [Bombus terrestris]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%), Gaps = 1/64 (1%)

Query: 4    EHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKR 63
            + +AT CPFL  FE RQLLLYA+SFDRDRALQRL+DS PE++  SD+QERVTPRL+RRKR
Sbjct: 1619 QQIATVCPFLFPFETRQLLLYATSFDRDRALQRLLDSAPELSG-SDSQERVTPRLERRKR 1677

Query: 64   TVSR 67
            T+SR
Sbjct: 1678 TISR 1681

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209299|gb|EFN86384.1| Probable E3 ubiquitin-protein ligase TRIP12 [Harpegnathos saltator]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%), Gaps = 1/64 (1%)

Query: 4    EHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKR 63
            + +AT CPFL  FE RQLLLYA+SFDRDRALQRL+DS PE++  SD+QERVTPRL+RRKR
Sbjct: 1622 QQIATVCPFLFPFETRQLLLYATSFDRDRALQRLLDSAPELSG-SDSQERVTPRLERRKR 1680

Query: 64   TVSR 67
            T+SR
Sbjct: 1681 TISR 1684

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714423|ref|XP_003395728.1| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like isoform 2 [Bombus terrestris]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%), Gaps = 1/64 (1%)

Query: 4    EHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKR 63
            + +AT CPFL  FE RQLLLYA+SFDRDRALQRL+DS PE++  SD+QERVTPRL+RRKR
Sbjct: 1617 QQIATVCPFLFPFETRQLLLYATSFDRDRALQRLLDSAPELSG-SDSQERVTPRLERRKR 1675

Query: 64   TVSR 67
            T+SR
Sbjct: 1676 TISR 1679

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483811|ref|XP_003424889.1| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like isoform 2 [Nasonia vitripennis] gi|345483813|ref|XP_001604013.2| PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like isoform 1 [Nasonia vitripennis]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 55/64 (85%), Gaps = 1/64 (1%)

Query: 4    EHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKR 63
            + +AT CPFL  FE RQLL YA+SFDRDRALQRL+DS PE++  SD+QERVTPRL+RRKR
Sbjct: 1730 QQIATVCPFLFPFETRQLLFYATSFDRDRALQRLLDSAPELSG-SDSQERVTPRLERRKR 1788

Query: 64   TVSR 67
            T+SR
Sbjct: 1789 TISR 1792

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795581|gb|EFZ18263.1| hypothetical protein SINV_16586 [Solenopsis invicta]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 56/64 (87%), Gaps = 1/64 (1%)

Query: 4    EHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKR 63
            + +A+ CPFL  FE RQLLLYA+SFDRDRALQRL+DS PE++  SD+QERVTPRL+RRKR
Sbjct: 1386 QQIASVCPFLFPFETRQLLLYATSFDRDRALQRLLDSAPELSG-SDSQERVTPRLERRKR 1444

Query: 64   TVSR 67
            T+SR
Sbjct: 1445 TISR 1448

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469860|gb|EFX80839.1| hypothetical protein DAPPUDRAFT_50916 [Daphnia pulex]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 52/64 (81%)

Query: 5    HLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRT 64
             +AT CPFL  FE R LL YA++FDRDRALQRL+DS PE+ +  D+ ERVTPRLDRRKRT
Sbjct: 1259 QIATACPFLFPFETRHLLFYATAFDRDRALQRLMDSAPELMSGGDSSERVTPRLDRRKRT 1318

Query: 65   VSRQ 68
            VSR+
Sbjct: 1319 VSRE 1322

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
UNIPROTKB|F6X7F9	1980	TRIP12 "Uncharacterized protei	0.915	0.032	0.602	7.1e-15
UNIPROTKB|E1B7Q7	1992	TRIP12 "E3 ubiquitin-protein l	0.915	0.032	0.602	7.2e-15
UNIPROTKB|Q14669	1992	TRIP12 "E3 ubiquitin-protein l	0.915	0.032	0.602	7.2e-15
UNIPROTKB|E2R657	1993	TRIP12 "Uncharacterized protei	0.915	0.032	0.602	7.2e-15
UNIPROTKB|I3LK74	2002	TRIP12 "Uncharacterized protei	0.915	0.032	0.602	7.2e-15
UNIPROTKB|J9NRQ4	2011	TRIP12 "Uncharacterized protei	0.915	0.032	0.602	7.2e-15
MGI|MGI:1309481	2025	Trip12 "thyroid hormone recept	0.915	0.032	0.602	7.3e-15
RGD|1306607	2025	Trip12 "thyroid hormone recept	0.915	0.032	0.602	7.3e-15
FB|FBgn0260794	3140	ctrip "circadian trip" [Drosop	0.859	0.019	0.629	1.2e-14
UNIPROTKB|E1BZV7	2035	TRIP12 "Uncharacterized protei	0.901	0.031	0.611	1.2e-14

UNIPROTKB|F6X7F9 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 205 (77.2 bits), Expect = 7.1e-15, P = 7.1e-15
 Identities = 41/68 (60%), Positives = 54/68 (79%)

Query:     2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
             +TE L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN  SD+Q+ RV PRLDR
Sbjct:  1519 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1576

Query:    61 RKRTVSRQ 68
             +KRTV+R+
Sbjct:  1577 KKRTVNRE 1584

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E1B7Q7 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Bos taurus (taxid:9913)]

 Score = 205 (77.2 bits), Expect = 7.2e-15, P = 7.2e-15
 Identities = 41/68 (60%), Positives = 54/68 (79%)

Query:     2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
             +TE L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN  SD+Q+ RV PRLDR
Sbjct:  1531 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1588

Query:    61 RKRTVSRQ 68
             +KRTV+R+
Sbjct:  1589 KKRTVNRE 1596

GO:0009790 "embryo development" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISS

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|Q14669 TRIP12 "E3 ubiquitin-protein ligase TRIP12" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 7.2e-15, P = 7.2e-15
 Identities = 41/68 (60%), Positives = 54/68 (79%)

Query:     2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
             +TE L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN  SD+Q+ RV PRLDR
Sbjct:  1531 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1588

Query:    61 RKRTVSRQ 68
             +KRTV+R+
Sbjct:  1589 KKRTVNRE 1596

GO:0006281 "DNA repair" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA;IMP;NAS;IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA;IMP;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:2000780 "negative regulation of double-strand break repair" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=ISS

UNIPROTKB|E2R657 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 205 (77.2 bits), Expect = 7.2e-15, P = 7.2e-15
 Identities = 41/68 (60%), Positives = 54/68 (79%)

Query:     2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
             +TE L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN  SD+Q+ RV PRLDR
Sbjct:  1532 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1589

Query:    61 RKRTVSRQ 68
             +KRTV+R+
Sbjct:  1590 KKRTVNRE 1597

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|I3LK74 TRIP12 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 205 (77.2 bits), Expect = 7.2e-15, P = 7.2e-15
 Identities = 41/68 (60%), Positives = 54/68 (79%)

Query:     2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
             +TE L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN  SD+Q+ RV PRLDR
Sbjct:  1568 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1625

Query:    61 RKRTVSRQ 68
             +KRTV+R+
Sbjct:  1626 KKRTVNRE 1633

GO:2000780 "negative regulation of double-strand break repair" evidence=IEA

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|J9NRQ4 TRIP12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 205 (77.2 bits), Expect = 7.2e-15, P = 7.2e-15
 Identities = 41/68 (60%), Positives = 54/68 (79%)

Query:     2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
             +TE L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN  SD+Q+ RV PRLDR
Sbjct:  1550 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1607

Query:    61 RKRTVSRQ 68
             +KRTV+R+
Sbjct:  1608 KKRTVNRE 1615

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

MGI|MGI:1309481 Trip12 "thyroid hormone receptor interactor 12" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 7.3e-15, P = 7.3e-15
 Identities = 41/68 (60%), Positives = 54/68 (79%)

Query:     2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
             +TE L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN  SD+Q+ RV PRLDR
Sbjct:  1564 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1621

Query:    61 RKRTVSRQ 68
             +KRTV+R+
Sbjct:  1622 KKRTVNRE 1629

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IBA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005737 "cytoplasm" evidence=IBA

GO:0006281 "DNA repair" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0009790 "embryo development" evidence=IMP

GO:0016874 "ligase activity" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISO

GO:2000780 "negative regulation of double-strand break repair" evidence=ISO

RGD|1306607 Trip12 "thyroid hormone receptor interactor 12" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 7.3e-15, P = 7.3e-15
 Identities = 41/68 (60%), Positives = 54/68 (79%)

Query:     2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
             +TE L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN  SD+Q+ RV PRLDR
Sbjct:  1564 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1621

Query:    61 RKRTVSRQ 68
             +KRTV+R+
Sbjct:  1622 KKRTVNRE 1629

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS;IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005654 "nucleoplasm" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IBA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO;ISS

GO:0009790 "embryo development" evidence=ISO;ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO;ISS;IBA

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=ISO;ISS

GO:2000780 "negative regulation of double-strand break repair" evidence=ISO;ISS

FB|FBgn0260794 ctrip "circadian trip" [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 39/62 (62%), Positives = 49/62 (79%)

Query:     6 LATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRTV 65
             +   CPFL  FE R LL YA+SFDRDRALQRL+D+TP++N  +++ ERV PRLDRRKR +
Sbjct:  2547 IGMACPFLFPFETRHLLFYATSFDRDRALQRLLDTTPDLNA-AESSERVAPRLDRRKRAI 2605

Query:    66 SR 67
             SR
Sbjct:  2606 SR 2607

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|E1BZV7 TRIP12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 41/67 (61%), Positives = 53/67 (79%)

Query:     2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
             +TE L  TCPF   F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN  SD+Q+ RV PRLDR
Sbjct:  1574 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1631

Query:    61 RKRTVSR 67
             +KRTV+R
Sbjct:  1632 KKRTVNR 1638

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:1901315 "negative regulation of histone H2A K63-linked ubiquitination" evidence=IEA

GO:2000780 "negative regulation of double-strand break repair" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
G5E870	TRIPC_MOUSE	6, ., 3, ., 2, ., -	0.5625	0.9014	0.0316	yes	N/A
B4F6W9	TRIPC_XENTR	6, ., 3, ., 2, ., -	0.5555	0.8873	0.0306	yes	N/A
F1LP64	TRIPC_RAT	6, ., 3, ., 2, ., -	0.5625	0.9014	0.0316	yes	N/A
E1B7Q7	TRIPC_BOVIN	6, ., 3, ., 2, ., -	0.5625	0.9014	0.0321	yes	N/A
F1RCR6	TRIPC_DANRE	6, ., 3, ., 2, ., -	0.5555	0.8873	0.0310	yes	N/A
Q14669	TRIPC_HUMAN	6, ., 3, ., 2, ., -	0.5625	0.9014	0.0321	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
KOG0170|consensus	621		99.9
KOG0942|consensus	1001		83.77

>KOG0170|consensus

Probab=99.90  E-value=3.2e-25  Score=174.69  Aligned_cols=69  Identities=30%  Similarity=0.520  Sum_probs=63.4

Q ss_pred             CchHHhhhhCCceeeHHHHHHHHHHhhcchhHHHHHHHhhCC-cCCCCCCCCcccCCCcCceeEEeeCCC
Q psy4369           1 MVTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTP-EINNHSDTQERVTPRLDRRKRTVSRQG   69 (71)
Q Consensus         1 ~W~~~L~~~cpFLFPFetR~~~f~~TsFG~~R~i~~~q~~~~-~~~~~~~~~~~~~gRl~R~KvrVsR~~   69 (71)
                      +||.+|++.|||||||+||++||||||||++|+||+||+.+. +.+++.++...++|||+|||+||+|++
T Consensus       165 ~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~~~~s~~e~~~~~grL~RkK~risR~~  234 (621)
T KOG0170|consen  165 DWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGSKDGSNDEALQQLGRLTRKKLRISRKT  234 (621)
T ss_pred             hhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCCCCCCchHHhHhhcccchhhhhhhHHH
Confidence            599999999999999999999999999999999999999884 445667778899999999999999974

>KOG0942|consensus

Probab=83.77  E-value=0.84  Score=39.41  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             HHhhhhCCceeeHHHHHHHHHH
Q psy4369           4 EHLATTCPFLLNFEIRQLLLYA   25 (71)
Q Consensus         4 ~~L~~~cpFLFPFetR~~~f~~   25 (71)
                      ..+...|||+.||+-|-++||.
T Consensus       598 l~IL~e~PF~vPF~~RVklfq~  619 (1001)
T KOG0942|consen  598 LCILKEIPFFVPFEERVKLFQR  619 (1001)
T ss_pred             HHHHHcCCeeechHHHHHHHHH
Confidence            4578899999999999999984

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00