Psyllid ID: psy4445

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
HKEVTRESCGDTGKCLQNNDKTLVNKAEAREFCGDIERYSCSNDKTLVSKCTAYDTNNNTDGDLDSYYKFPRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKNSSCKGGLNI
cccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHcccccccEEEEEEccccccEEEEEEEcccccccccccccccccccccEEEEEEccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEcccEEEEEEEccccccccccccccEEEEEEEEEcccEEEEcccccccEEEEcc
ccEEEcccccccccccccccccHHcHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHcccccccHHHEccccccEEEEEEEEcccccccccccccccEEEEEEEEEEEEEcccccccccccccccEEcccccEEEEEEEEccccccccccccccHHHHHHHcccEEEEEEEcccccccccccccEEEEEEEEccccEEEEEcccccccccccc
hkevtrescgdtgkclqnndktLVNKAEAREFCgdieryscsndktlVSKCtaydtnnntdgdldsyykfprsidnlpqlNCLADLVEELHRIFSDDHVNVDYVKFVMKSYksnpmewrkyskfdkykYTRNLVDAGNDKFNLMILCwgeghgssvhdhadahcfmtnetkkSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCwgeghgssvhdhADAHCFMKMLDGcltetryawpqtdedgeekplqvigksplklnevcyingknssckgglni
hkevtrescgdtgkclqnndktlvNKAEAREFCgdieryscsndktLVSKCTaydtnnntdgdlDSYYKFPRSIDNLPQLNCLADLVEELHRIfsddhvnvDYVKFVMksyksnpmewrkyskfdkyKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGeekplqvigksplklnevcyingknssckgglni
HKEVTRESCGDTGKCLQNNDKTLVNKAEAREFCGDIERYSCSNDKTLVSKCTAYDTNNNTDGDLDSYYKFPRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKNSSCKGGLNI
*********************TLVNKAEAREFCGDIERYSCSNDKTLVSKCTAYDTNNNTDGDLDSYYKFPRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQ**********QVIGKSPLKLNEVCYING***********
*********GDTGKCLQNND***************I*RYSCS*********T****************************NCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAW******************PLKLNEVCYINGKNSSCKGGLNI
**********DTGKCLQNNDKTLVNKAEAREFCGDIERYSCSNDKTLVSKCTAYDTNNNTDGDLDSYYKFPRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKNSSCKGGLNI
****TRESCGDTGKCLQNNDKTLVNKAEAREFCGDIERYSCSNDKTLVSKCTAYDTN*NTDGDLDSYYKFPRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKNSSCKGGLNI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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HKEVTRESCGDTGKCLQNNDKTLVNKAEAREFCGDIERYSCSNDKTLVSKCTAYDTNNNTDGDLDSYYKFPRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKNSSCKGGLNI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query279 2.2.26 [Sep-21-2011]
Q6NWZ9201 Cysteine dioxygenase type yes N/A 0.383 0.532 0.536 5e-31
Q3SZU4200 Cysteine dioxygenase type yes N/A 0.272 0.38 0.654 5e-31
P21816200 Cysteine dioxygenase type yes N/A 0.272 0.38 0.666 7e-31
P60334200 Cysteine dioxygenase type yes N/A 0.272 0.38 0.666 7e-31
Q5RBQ7200 Cysteine dioxygenase type yes N/A 0.272 0.38 0.642 2e-30
Q16878200 Cysteine dioxygenase type yes N/A 0.272 0.38 0.642 2e-30
Q20893190 Cysteine dioxygenase 1 OS yes N/A 0.286 0.421 0.583 4e-23
Q60TI7190 Cysteine dioxygenase OS=C N/A N/A 0.286 0.421 0.583 5e-22
Q5RLY7213 Cysteine dioxygenase OS=A N/A N/A 0.297 0.389 0.529 6e-19
Q9U8F1212 Cysteine dioxygenase OS=S N/A N/A 0.293 0.386 0.4 3e-17
>sp|Q6NWZ9|CDO1_DANRE Cysteine dioxygenase type 1 OS=Danio rerio GN=cdo1 PE=2 SV=1 Back     alignment and function desciption
 Score =  135 bits (339), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 82/110 (74%), Gaps = 3/110 (2%)

Query: 83  LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
           L DL++ LH+IF  D +NV+ V+ +M+SY+SNP +W K++KFD+Y+YTRNLVD GN KFN
Sbjct: 12  LEDLIKTLHQIFQSDSINVEEVQNLMESYQSNPQDWMKFAKFDQYRYTRNLVDEGNGKFN 71

Query: 143 LMILCWGEGHGSSVHDHADAHCF---MTNETKKSLYTSSLNKVSCTLYTR 189
           LMILCWGEGHGSS+HDH D+HCF   +  + K++L+     K+   +  R
Sbjct: 72  LMILCWGEGHGSSIHDHTDSHCFLKLLQGQLKETLFDWPDRKLQSGMKPR 121

Danio rerio (taxid: 7955)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 2EC: 0
>sp|Q3SZU4|CDO1_BOVIN Cysteine dioxygenase type 1 OS=Bos taurus GN=CDO1 PE=2 SV=1 Back     alignment and function description
>sp|P21816|CDO1_RAT Cysteine dioxygenase type 1 OS=Rattus norvegicus GN=Cdo1 PE=1 SV=1 Back     alignment and function description
>sp|P60334|CDO1_MOUSE Cysteine dioxygenase type 1 OS=Mus musculus GN=Cdo1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RBQ7|CDO1_PONAB Cysteine dioxygenase type 1 OS=Pongo abelii GN=CDO1 PE=2 SV=1 Back     alignment and function description
>sp|Q16878|CDO1_HUMAN Cysteine dioxygenase type 1 OS=Homo sapiens GN=CDO1 PE=1 SV=2 Back     alignment and function description
>sp|Q20893|CDO1_CAEEL Cysteine dioxygenase 1 OS=Caenorhabditis elegans GN=cdo-1 PE=3 SV=2 Back     alignment and function description
>sp|Q60TI7|CDO_CAEBR Cysteine dioxygenase OS=Caenorhabditis briggsae GN=cdo-1 PE=3 SV=1 Back     alignment and function description
>sp|Q5RLY7|CDO_AJECG Cysteine dioxygenase OS=Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432) GN=CDO1 PE=2 SV=2 Back     alignment and function description
>sp|Q9U8F1|CDO_SCHJA Cysteine dioxygenase OS=Schistosoma japonicum GN=CDO PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
270010522245 hypothetical protein TcasGA2_TC009929 [T 0.476 0.542 0.540 8e-34
91087037243 PREDICTED: similar to cysteine dioxygena 0.308 0.353 0.711 8e-34
195584653238 GD25380 [Drosophila simulans] gi|1941941 0.362 0.424 0.656 1e-33
24655123238 CG5493, isoform A [Drosophila melanogast 0.362 0.424 0.656 2e-33
157816825238 RH34904p [Drosophila melanogaster] 0.362 0.424 0.656 2e-33
195335647238 GM19895 [Drosophila sechellia] gi|194126 0.318 0.373 0.65 3e-33
170073205245 cysteine dioxygenase [Culex quinquefasci 0.318 0.363 0.571 5e-33
427787331213 Putative cysteine dioxygenase cdo1 [Rhip 0.344 0.450 0.626 8e-33
194881139238 GG20963 [Drosophila erecta] gi|195487406 0.362 0.424 0.647 1e-32
195027980241 GH21607 [Drosophila grimshawi] gi|193902 0.279 0.323 0.685 3e-31
>gi|270010522|gb|EFA06970.1| hypothetical protein TcasGA2_TC009929 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  150 bits (378), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 98/137 (71%), Gaps = 4/137 (2%)

Query: 33  CGDIER--YSCSNDKTLVSKCTAYDTNNNTDGDLDSYYKFPRSIDN-LPQLNCLADLVEE 89
           C  I++  +      +++S C  Y    N D D     K  + + N LP +N L+DLV+E
Sbjct: 4   CRSIQQNDFGVRQKNSIMSVC-EYKNFYNQDNDEILEAKLCKHLGNGLPVINNLSDLVKE 62

Query: 90  LHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWG 149
           L  IF  D VNV+ V F+MKSYKSNP++W+KY+KFD+Y+YTRNLVD GND++NLMILCWG
Sbjct: 63  LRLIFECDSVNVELVSFLMKSYKSNPVDWKKYAKFDRYRYTRNLVDKGNDRYNLMILCWG 122

Query: 150 EGHGSSVHDHADAHCFM 166
           EGHGS++HDHA+AHCFM
Sbjct: 123 EGHGSAIHDHANAHCFM 139

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91087037|ref|XP_974462.1| PREDICTED: similar to cysteine dioxygenase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195584653|ref|XP_002082119.1| GD25380 [Drosophila simulans] gi|194194128|gb|EDX07704.1| GD25380 [Drosophila simulans] Back     alignment and taxonomy information
>gi|24655123|ref|NP_611348.1| CG5493, isoform A [Drosophila melanogaster] gi|386768261|ref|NP_001246409.1| CG5493, isoform B [Drosophila melanogaster] gi|386768263|ref|NP_001246410.1| CG5493, isoform C [Drosophila melanogaster] gi|386768265|ref|NP_001246411.1| CG5493, isoform D [Drosophila melanogaster] gi|7302587|gb|AAF57668.1| CG5493, isoform A [Drosophila melanogaster] gi|288558768|gb|ADC53515.1| FI11950p [Drosophila melanogaster] gi|383302578|gb|AFH08162.1| CG5493, isoform B [Drosophila melanogaster] gi|383302579|gb|AFH08163.1| CG5493, isoform C [Drosophila melanogaster] gi|383302580|gb|AFH08164.1| CG5493, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|157816825|gb|ABV82404.1| RH34904p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195335647|ref|XP_002034475.1| GM19895 [Drosophila sechellia] gi|194126445|gb|EDW48488.1| GM19895 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|170073205|ref|XP_001870330.1| cysteine dioxygenase [Culex quinquefasciatus] gi|167869715|gb|EDS33098.1| cysteine dioxygenase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|427787331|gb|JAA59117.1| Putative cysteine dioxygenase cdo1 [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|194881139|ref|XP_001974706.1| GG20963 [Drosophila erecta] gi|195487406|ref|XP_002091895.1| GE13903 [Drosophila yakuba] gi|190657893|gb|EDV55106.1| GG20963 [Drosophila erecta] gi|194177996|gb|EDW91607.1| GE13903 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|195027980|ref|XP_001986860.1| GH21607 [Drosophila grimshawi] gi|193902860|gb|EDW01727.1| GH21607 [Drosophila grimshawi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query279
FB|FBgn0034364238 CG5493 [Drosophila melanogaste 0.362 0.424 0.656 5.1e-35
ZFIN|ZDB-GENE-040426-1704201 cdo1 "cysteine dioxygenase, ty 0.333 0.462 0.593 5.4e-31
UNIPROTKB|Q3SZU4200 CDO1 "Cysteine dioxygenase typ 0.301 0.42 0.654 1.1e-30
MGI|MGI:105925200 Cdo1 "cysteine dioxygenase 1, 0.301 0.42 0.666 1.1e-30
RGD|69262200 Cdo1 "cysteine dioxygenase, ty 0.301 0.42 0.666 1.1e-30
UNIPROTKB|D0G6R7200 CDO1 "Cysteine dioxygenase, ty 0.301 0.42 0.654 2.3e-30
UNIPROTKB|Q16878200 CDO1 "Cysteine dioxygenase typ 0.301 0.42 0.642 4.9e-30
UNIPROTKB|E2R3U0200 CDO1 "Uncharacterized protein" 0.301 0.42 0.630 1.6e-29
UNIPROTKB|E1C9J4206 CDO1 "Uncharacterized protein" 0.301 0.407 0.651 5.6e-29
WB|WBGene00018986190 cdo-1 [Caenorhabditis elegans 0.290 0.426 0.604 1.8e-23
FB|FBgn0034364 CG5493 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 67/102 (65%), Positives = 82/102 (80%)

Query:    66 SYYK-FPRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKF 124
             SYY+   + +   P++N L+DLV  LHR F  ++VN++ V  +M SYKSNP EWRKY+KF
Sbjct:    24 SYYQPLEKPLKYGPEVNSLSDLVAALHREFESNYVNIEMVNHLMLSYKSNPREWRKYAKF 83

Query:   125 DKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFM 166
             D+Y YTRNLVDAGN KFNL+ILCWGEGHGSSVHDHAD+HCFM
Sbjct:    84 DRYTYTRNLVDAGNGKFNLLILCWGEGHGSSVHDHADSHCFM 125
GO:0017172 "cysteine dioxygenase activity" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005506 "iron ion binding" evidence=IEA
GO:0046439 "L-cysteine metabolic process" evidence=IEA
ZFIN|ZDB-GENE-040426-1704 cdo1 "cysteine dioxygenase, type I" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZU4 CDO1 "Cysteine dioxygenase type 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:105925 Cdo1 "cysteine dioxygenase 1, cytosolic" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|69262 Cdo1 "cysteine dioxygenase, type I" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D0G6R7 CDO1 "Cysteine dioxygenase, type I" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q16878 CDO1 "Cysteine dioxygenase type 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R3U0 CDO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1C9J4 CDO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00018986 cdo-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6NWZ9CDO1_DANRE1, ., 1, 3, ., 1, 1, ., 2, 00.53630.38350.5323yesN/A
Q20893CDO1_CAEEL1, ., 1, 3, ., 1, 1, ., 2, 00.58330.28670.4210yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.13.11LOW CONFIDENCE prediction!
3rd Layer1.13.11.20LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
pfam05995170 pfam05995, CDO_I, Cysteine dioxygenase type I 9e-31
pfam05995170 pfam05995, CDO_I, Cysteine dioxygenase type I 7e-25
>gnl|CDD|218847 pfam05995, CDO_I, Cysteine dioxygenase type I Back     alignment and domain information 
 Score =  112 bits (282), Expect = 9e-31
 Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 74  IDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNL 133
              + + + LADLV +L + F     +V  V  +++ Y S+P EW KY +FD+  YTRN 
Sbjct: 4   STGVLKPSTLADLVAQLLQAFRQAEADVPEVAKLLERYISDPTEWGKYVRFDQTGYTRNR 63

Query: 134 VDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMT 167
           + AGN ++ L +L W  G G+ VHDH  +H  + 
Sbjct: 64  I-AGNGEYELWLLSWPPGQGTGVHDHGGSHGALK 96

Cysteine dioxygenase type I (EC:1.13.11.20) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production. Length = 170
>gnl|CDD|218847 pfam05995, CDO_I, Cysteine dioxygenase type I Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 279
KOG4064|consensus196 100.0
PF05995175 CDO_I: Cysteine dioxygenase type I; InterPro: IPR0 100.0
COG5553191 Predicted metal-dependent enzyme of the double-str 99.34
KOG4064|consensus196 98.86
PF05995175 CDO_I: Cysteine dioxygenase type I; InterPro: IPR0 98.77
PF07847200 DUF1637: Protein of unknown function (DUF1637); In 96.92
KOG4281|consensus236 95.98
COG1917131 Uncharacterized conserved protein, contains double 91.36
PF02041167 Auxin_BP: Auxin binding protein; InterPro: IPR0005 91.27
PRK13290125 ectC L-ectoine synthase; Reviewed 91.19
TIGR02451215 anti_sig_ChrR anti-sigma factor, putative, ChrR fa 90.76
TIGR03404367 bicupin_oxalic bicupin, oxalate decarboxylase fami 85.94
PF1297391 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_ 85.35
smart00835146 Cupin_1 Cupin. This family represents the conserve 82.25
COG5553191 Predicted metal-dependent enzyme of the double-str 82.02
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 81.65
>KOG4064|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.7e-43  Score=301.97  Aligned_cols=143  Identities=57%  Similarity=0.948  Sum_probs=131.2

Q ss_pred             CCCcCCCCCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCccccccccccCcccceEeeecCCCCceeEEEEeecC
Q psy4445          71 PRSIDNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGE  150 (279)
Q Consensus        71 ~~~~~~~~~~~~L~~lV~~L~~~~~sd~vd~~~v~~ll~~y~sn~~dW~~ya~~d~~rYtRNLV~~~ngk~nL~~LcW~p  150 (279)
                      +++++-.|...+|.+||.+|+++|+++.||+++|+++|++|.|||.+|++||.||.++||||||+.||||||||+|    
T Consensus         2 eq~~~~~p~~~sl~dLv~~lh~~F~~~~vnveeV~~lM~sYkSnp~EWr~yAkFD~y~YTRNLVD~GNGKfNLmIL----   77 (196)
T KOG4064|consen    2 EQTEVLKPRMISLVDLVVQLHEIFQQKLVNVEEVMKLMASYKSNPNEWRRYAKFDMYKYTRNLVDVGNGKFNLMIL----   77 (196)
T ss_pred             CCccccCchhhhHHHHHHHHHHHHHhcccCHHHHHHHHHHhhcCHHHHHHHHhhhHHHHhhhhhhcCCCeEeEEEE----
Confidence            4566666777889999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             CCCCccccCCCCceeeeecccceeecccCcccccccceeeeeecCCCcceeEEEeecCCCccccccCCCcceeeEeecce
Q psy4445         151 GHGSSVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGC  230 (279)
Q Consensus       151 Gq~S~IHdH~~ahC~~~g~~~e~~y~~~~nk~s~t~YTRnlV~~i~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~  230 (279)
                                                                            ||+||.+|.||||.++||+||+|+|.
T Consensus        78 ------------------------------------------------------CWGeGhgSSvHDHtdsHCF~KmL~G~  103 (196)
T KOG4064|consen   78 ------------------------------------------------------CWGEGHGSSVHDHTDSHCFVKMLDGE  103 (196)
T ss_pred             ------------------------------------------------------EecCCCCccccccccchhHHHHhcCc
Confidence                                                                  78888888888888899999999999


Q ss_pred             EEEEeecCCCCCCCCCCCcceeecceeecCCCeeEEcCCCCCccC
Q psy4445         231 LTETRYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKNSSCKG  275 (279)
Q Consensus       231 l~E~rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~iG~~k~  275 (279)
                      |+|++|+||+.+    ...+..++++++..++|+||||+||+|.+
T Consensus       104 L~Et~yawPd~k----s~e~v~isE~~~~~N~vaYiND~lGLHRv  144 (196)
T KOG4064|consen  104 LTETKYAWPDRK----SHEPVDISEKTYGMNGVAYINDELGLHRV  144 (196)
T ss_pred             chhhcccCCCcc----cCccccccceeeeccceEEecccccceec
Confidence            999999999764    45667788899999999999999999975

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1 Back     alignment and domain information
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only] Back     alignment and domain information
>KOG4064|consensus Back     alignment and domain information
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1 Back     alignment and domain information
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine Back     alignment and domain information
>KOG4281|consensus Back     alignment and domain information
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER) Back     alignment and domain information
>PRK13290 ectC L-ectoine synthase; Reviewed Back     alignment and domain information
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family Back     alignment and domain information
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family Back     alignment and domain information
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A Back     alignment and domain information
>smart00835 Cupin_1 Cupin Back     alignment and domain information
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only] Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
2b5h_A200 1.5 A Resolution Crystal Structure Of Recombinant R 5e-32
2b5h_A200 1.5 A Resolution Crystal Structure Of Recombinant R 6e-22
2ic1_A205 Crystal Structure Of Human Cysteine Dioxygenase In 1e-31
2ic1_A205 Crystal Structure Of Human Cysteine Dioxygenase In 2e-22
2atf_A200 X-Ray Structure Of Cysteine Dioxygenase Type I From 3e-31
2atf_A200 X-Ray Structure Of Cysteine Dioxygenase Type I From 6e-21
>pdb|2B5H|A Chain A, 1.5 A Resolution Crystal Structure Of Recombinant R. Norvegicus Cysteine Dioxygenase Length = 200 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 71/84 (84%)
Query: 83  LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
           LADL+  LH +F+ D VNV+ V+ V+++Y+SNP EW  Y+KFD+Y+YTRNLVD GN KFN
Sbjct: 12  LADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVDQGNGKFN 71
Query: 143 LMILCWGEGHGSSVHDHADAHCFM 166
           LMILCWGEGHGSS+HDH D+HCF+
Sbjct: 72  LMILCWGEGHGSSIHDHTDSHCFL 95
>pdb|2B5H|A Chain A, 1.5 A Resolution Crystal Structure Of Recombinant R. Norvegicus Cysteine Dioxygenase Length = 200 Back     alignment and structure
>pdb|2IC1|A Chain A, Crystal Structure Of Human Cysteine Dioxygenase In Complex With Substrate Cysteine Length = 205 Back     alignment and structure
>pdb|2IC1|A Chain A, Crystal Structure Of Human Cysteine Dioxygenase In Complex With Substrate Cysteine Length = 205 Back     alignment and structure
>pdb|2ATF|A Chain A, X-Ray Structure Of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056 Length = 200 Back     alignment and structure
>pdb|2ATF|A Chain A, X-Ray Structure Of Cysteine Dioxygenase Type I From Mus Musculus Mm.241056 Length = 200 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query279
3eln_A200 Cysteine dioxygenase type 1; peroxysulfenate, non- 2e-28
3eln_A200 Cysteine dioxygenase type 1; peroxysulfenate, non- 2e-20
3eqe_A171 Putative cystein deoxygenase; YUBC, SR112, NESG, s 2e-18
3eqe_A171 Putative cystein deoxygenase; YUBC, SR112, NESG, s 2e-14
2gm6_A208 Cysteine dioxygenase type I; structural genomics, 2e-15
2gm6_A208 Cysteine dioxygenase type I; structural genomics, 1e-14
3uss_A211 Putative uncharacterized protein; cupin, three his 2e-14
3uss_A211 Putative uncharacterized protein; cupin, three his 4e-12
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A Length = 200 Back     alignment and structure
 Score =  106 bits (266), Expect = 2e-28
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 76  NLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVD 135
            L +   LADL+  LH +F+ D VNV+ V+ V+++Y+SNP EW  Y+KFD+Y+YTRNLVD
Sbjct: 5   ELLKPRTLADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVD 64

Query: 136 AGNDKFNLMILCWGEGHGSSVHDHADAHCFMT 167
            GN KFNLMILCWGEGHGSS+HDH D+HCF+ 
Sbjct: 65  QGNGKFNLMILCWGEGHGSSIHDHTDSHCFLK 96
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A Length = 200 Back     alignment and structure
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis} Length = 171 Back     alignment and structure
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis} Length = 171 Back     alignment and structure
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19 Length = 208 Back     alignment and structure
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19 Length = 208 Back     alignment and structure
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} Length = 211 Back     alignment and structure
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
3eln_A200 Cysteine dioxygenase type 1; peroxysulfenate, non- 100.0
3eqe_A171 Putative cystein deoxygenase; YUBC, SR112, NESG, s 99.95
3uss_A211 Putative uncharacterized protein; cupin, three his 99.94
2gm6_A208 Cysteine dioxygenase type I; structural genomics, 99.94
3eln_A200 Cysteine dioxygenase type 1; peroxysulfenate, non- 98.61
3eqe_A171 Putative cystein deoxygenase; YUBC, SR112, NESG, s 98.51
3uss_A211 Putative uncharacterized protein; cupin, three his 97.86
2gm6_A208 Cysteine dioxygenase type I; structural genomics, 97.73
3h8u_A125 Uncharacterized conserved protein with double-STR 94.68
1v70_A105 Probable antibiotics synthesis protein; structural 93.97
2q30_A110 Uncharacterized protein; double-stranded beta-heli 93.92
3lag_A98 Uncharacterized protein RPA4178; functionally unkn 93.87
2fqp_A97 Hypothetical protein BP2299; double-stranded beta- 93.81
3h7j_A243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 92.12
4e2g_A126 Cupin 2 conserved barrel domain protein; MCSG, PSI 91.96
1yhf_A115 Hypothetical protein SPY1581; structural genomics, 91.54
2b8m_A117 Hypothetical protein MJ0764; structural genomics, 91.13
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 90.83
3i7d_A163 Sugar phosphate isomerase; YP_168127.1, structural 90.39
2gu9_A113 Tetracenomycin polyketide synthesis protein; X-RAY 90.33
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 89.42
3kgz_A156 Cupin 2 conserved barrel domain protein; metallopr 87.81
1lr5_A163 Auxin binding protein 1; beta jellyroll, double st 87.74
2oa2_A148 BH2720 protein; 10175341, structural genomics, joi 87.63
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 85.54
2ozi_A98 Hypothetical protein RPA4178; APC6210, putative pr 84.96
3rns_A227 Cupin 2 conserved barrel domain protein; structura 84.77
2f4p_A147 Hypothetical protein TM1010; double-stranded beta- 84.6
3ibm_A167 Cupin 2, conserved barrel domain protein; cupin 2 84.22
1o4t_A133 Putative oxalate decarboxylase; double-stranded be 84.19
2ozj_A114 Cupin 2, conserved barrel; cupin superfamily prote 84.17
3jzv_A166 Uncharacterized protein RRU_A2000; structural geno 84.06
3l2h_A162 Putative sugar phosphate isomerase; AFE_0303, stru 83.89
1dgw_A178 Canavalin; duplicated swiss-roll beta barrels, loo 83.67
3h7j_A 243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 82.53
3cew_A125 Uncharacterized cupin protein; all beta-protein, j 82.19
2bnm_A198 Epoxidase; oxidoreductase, cupin, HTH, cation-depe 82.03
1fi2_A201 Oxalate oxidase, germin; beta-jellyroll, oxidoredu 80.85
3rns_A 227 Cupin 2 conserved barrel domain protein; structura 80.31
1vj2_A126 Novel manganese-containing cupin TM1459; structura 80.06
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A Back     alignment and structure
Probab=100.00  E-value=1.9e-35  Score=260.54  Aligned_cols=140  Identities=50%  Similarity=0.934  Sum_probs=128.8

Q ss_pred             CCCCCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCccccccccccCcccceEeeecCCCCceeEEEEeecCCCCC
Q psy4445          75 DNLPQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEGHGS  154 (279)
Q Consensus        75 ~~~~~~~~L~~lV~~L~~~~~sd~vd~~~v~~ll~~y~sn~~dW~~ya~~d~~rYtRNLV~~~ngk~nL~~LcW~pGq~S  154 (279)
                      ..++.+.+|++||++|+++|+++++++++++.+|++|.+++++|.+|++||+.+|+||||++++++|+||++        
T Consensus         4 ~~~~~~~~l~~li~~l~~~~~~~~~~~~~l~~ll~~l~~~~~~W~~~~~~d~~~y~R~ll~~~~~~~~l~ll--------   75 (200)
T 3eln_A            4 TELLKPRTLADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVDQGNGKFNLMIL--------   75 (200)
T ss_dssp             CCCCCCSSHHHHHHHHHHHTSSSSCCHHHHHHHHHHSCCCHHHHGGGCCCCSSSCEEEEEECGGGTCEEEEE--------
T ss_pred             cccCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCHHHHHhhhccCccceEEEeeecCCCceEEEEE--------
Confidence            456788999999999999999999999999999999999999999999999999999999987777777776        


Q ss_pred             ccccCCCCceeeeecccceeecccCcccccccceeeeeecCCCcceeEEEeecCCCccccccCCCcceeeEeecceEEEE
Q psy4445         155 SVHDHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTET  234 (279)
Q Consensus       155 ~IHdH~~ahC~~~g~~~e~~y~~~~nk~s~t~YTRnlV~~i~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~  234 (279)
                                                                        ||.|||.||||||.++||+|+||+|+++|+
T Consensus        76 --------------------------------------------------~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~  105 (200)
T 3eln_A           76 --------------------------------------------------CWGEGHGSSIHDHTDSHCFLKLLQGNLKET  105 (200)
T ss_dssp             --------------------------------------------------EECTTCBCCEECCTTCEEEEEEEESCEEEE
T ss_pred             --------------------------------------------------EECCCCcCCCccCCCceEEEEEEeeeEEEE
Confidence                                                              899999999999999999999999999999


Q ss_pred             eecCCCCCCCCCCCcceeecceeecCCCeeEEcCCCCCccCC
Q psy4445         235 RYAWPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKNSSCKGG  276 (279)
Q Consensus       235 rY~~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~iG~~k~~  276 (279)
                      +|.+|+++    ..+|+.+++.++.+|+|.||+|.+|+|+++
T Consensus       106 ~y~~~~~~----~~~l~~~~~~~l~~G~v~~~~~~~giH~V~  143 (200)
T 3eln_A          106 LFDWPDKK----SNEMIKKSERTLRENQCAYINDSIGLHRVE  143 (200)
T ss_dssp             EECCCCSS----CCCCCEEEEEEECTTCEEEECTTTCEEEEE
T ss_pred             EeecCCCC----cccccccceEEeCCCCEEEecCCCcEEEEE
Confidence            99998764    347899999999999999999999999875
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis} Back     alignment and structure
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19 Back     alignment and structure
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19 Back     alignment and structure
>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A Back     alignment and structure
>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis} Back     alignment and structure
>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19 Back     alignment and structure
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19 Back     alignment and structure
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Back     alignment and structure
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} Back     alignment and structure
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Back     alignment and structure
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Back     alignment and structure
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Back     alignment and structure
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} Back     alignment and structure
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Back     alignment and structure
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Back     alignment and structure
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Back     alignment and structure
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Back     alignment and structure
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Back     alignment and structure
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Back     alignment and structure
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A Back     alignment and structure
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 279
d3elna1186 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {R 2e-29
d3elna1186 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {R 3e-20
d2gm6a1192 b.82.1.19 (A:11-202) Cysteine dioxygenase type I { 8e-18
d2gm6a1192 b.82.1.19 (A:11-202) Cysteine dioxygenase type I { 2e-15
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} Length = 186 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

 Score =  107 bits (269), Expect = 2e-29
 Identities = 56/86 (65%), Positives = 71/86 (82%)

Query: 83  LADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFN 142
           LADL+  LH +F+ D VNV+ V+ V+++Y+SNP EW  Y+KFD+Y+YTRNLVD GN KFN
Sbjct: 8   LADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVDQGNGKFN 67

Query: 143 LMILCWGEGHGSSVHDHADAHCFMTN 168
           LMILCWGEGHGSS+HDH D+HCF+  
Sbjct: 68  LMILCWGEGHGSSIHDHTDSHCFLKL 93
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} Length = 186 Back     information, alignment and structure
>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]} Length = 192 Back     information, alignment and structure
>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]} Length = 192 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query279
d3elna1186 Cysteine dioxygenase type I {Rattus norvegicus [Ta 100.0
d2gm6a1192 Cysteine dioxygenase type I {Ralstonia eutropha [T 99.89
d3elna1186 Cysteine dioxygenase type I {Rattus norvegicus [Ta 98.72
d2gm6a1192 Cysteine dioxygenase type I {Ralstonia eutropha [T 97.46
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 97.46
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 96.17
d1vj2a_114 Hypothetical protein TM1459 {Thermotoga maritima [ 93.46
d1lr5a_160 Auxin binding protein {Maize (Zea mays) [TaxId: 45 92.07
d2b8ma1108 Hypothetical protein MJ0764 {Archaeon Methanococcu 91.97
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 91.88
d2f4pa1134 Hypothetical protein TM1010 {Thermotoga maritima [ 91.14
d2et1a1201 Germin {Barley (Hordeum vulgare) [TaxId: 4513]} 85.94
d1o4ta_115 Hypothetical protein TM1287 {Thermotoga maritima [ 85.32
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 85.17
d1od5a2173 Seed storage 7S protein {Soybean (Glycine max), gl 84.08
g1dgw.1168 Seed storage 7S protein {Jack bean (Canavalia ensi 82.18
d2phla2162 Seed storage 7S protein {French bean (Phaseolus vu 81.23
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=5.8e-34  Score=245.34  Aligned_cols=137  Identities=50%  Similarity=0.942  Sum_probs=124.5

Q ss_pred             CCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcCccccccccccCcccceEeeecCCCCceeEEEEeecCCCCCccc
Q psy4445          78 PQLNCLADLVEELHRIFSDDHVNVDYVKFVMKSYKSNPMEWRKYSKFDKYKYTRNLVDAGNDKFNLMILCWGEGHGSSVH  157 (279)
Q Consensus        78 ~~~~~L~~lV~~L~~~~~sd~vd~~~v~~ll~~y~sn~~dW~~ya~~d~~rYtRNLV~~~ngk~nL~~LcW~pGq~S~IH  157 (279)
                      .++.+|++||+.|+++++++++++++|+.+|++|.+|+++|++|+.|++.+|+||||+.+|++|+|+++           
T Consensus         3 ~~p~~l~~Li~~l~~~~~~~~~~i~~v~~ll~~~~~~~~~w~~~~~~~~~~Y~R~li~~~~~~fel~li-----------   71 (186)
T d3elna1           3 LKPRTLADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVDQGNGKFNLMIL-----------   71 (186)
T ss_dssp             CCCSSHHHHHHHHHHHTSSSSCCHHHHHHHHHHSCCCHHHHGGGCCCCSSSCEEEEEECGGGTCEEEEE-----------
T ss_pred             CCHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHccCCHHHHHHhcccCccccEEEEEEcCCCCeEEEEE-----------
Confidence            356799999999999999999999999999999999999999999999999999999876665666555           


Q ss_pred             cCCCCceeeeecccceeecccCcccccccceeeeeecCCCcceeEEEeecCCCccccccCCCcceeeEeecceEEEEeec
Q psy4445         158 DHADAHCFMTNETKKSLYTSSLNKVSCTLYTRNLVDAGNDKFNLMILCWGEGHGSSVHDHADAHCFMKMLDGCLTETRYA  237 (279)
Q Consensus       158 dH~~ahC~~~g~~~e~~y~~~~nk~s~t~YTRnlV~~i~~~~elvll~W~pGQ~SpIHDH~gshC~~kVL~G~l~E~rY~  237 (279)
                                                                     ||.|||.||||||+++|||++||+|+++|+.|.
T Consensus        72 -----------------------------------------------~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~  104 (186)
T d3elna1          72 -----------------------------------------------CWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFD  104 (186)
T ss_dssp             -----------------------------------------------EECTTCBCCEECCTTCEEEEEEEESCEEEEEEC
T ss_pred             -----------------------------------------------EccCCCcCCCccCCCCcEEEEEcccceEEEEee
Confidence                                                           999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcceeecceeecCCCeeEEcCCCCCccCC
Q psy4445         238 WPQTDEDGEEKPLQVIGKSPLKLNEVCYINGKNSSCKGG  276 (279)
Q Consensus       238 ~p~~~~~g~~~pL~~~~~~~l~~geVtYIsD~iG~~k~~  276 (279)
                      ++.++    ..+|...++..+.+|+|+||+|.+|+|...
T Consensus       105 ~~~~~----~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~  139 (186)
T d3elna1         105 WPDKK----SNEMIKKSERTLRENQCAYINDSIGLHRVE  139 (186)
T ss_dssp             CCCSS----CCCCCEEEEEEECTTCEEEECTTTCEEEEE
T ss_pred             cCCCC----cccccccceEEecCCCEEEeCCCCCcceee
Confidence            98764    457889999999999999999999999763
>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]} Back     information, alignment and structure
>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]} Back     information, alignment and structure
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Back     information, alignment and structure
>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Back     information, alignment and structure