Psyllid ID: psy445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MLSMNDPSLTDRCAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGKSVSRFNNALA
Secondary Structure (PSIPRED)
cccccccccccHHHHcccccccccccccccccccEEEEccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHccccccEEEEEEEEccEEEEEEcccccccccccccccccccccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHccccccccccccccccccEEEEccccccccHHHcccHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHcccEEEEEEEccccEEEEEccccccccccccccccccccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
mlsmndpsltdRCAQlsgmlpfdgiglyeqpkprfifkmprvvpdqkskfesdELFRRLSREsevrytgfrdrpqeERQVRFqngcreghtEIAFIATgtniqlvfnpsisansyhmappsrecdfdkehgksVSRFNNALA
Flexible Loop (DISEMBL)
mlsmndpsLTDRCAQLSGMLPFDGIGLYEQPKPRFIFKMprvvpdqkskfesdelfrrlsresevrytgfrdrpqeerqVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGKSVSRFNNALA
Low Complexity Region (SEG)
MLSMNDPSLTDRCAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGKSVSRFNNALA
Disordered region (IsUnstruct)
************CAQLSGMLPFDGIGLYEQPKPRFIFKMPRV***************************************FQNGCREGHTEIAFIATGTNIQLVFNPSIS*******************************
Disordered Region (DISOPRED)
**************QLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISAN****AP*SRECDFDKEHGKSVSRFNNALA
Disordered Region (DISEMBL)
*********TDRCAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGKSVSRFNNALA
Disordered Region (DISPRO)
*****DPSLTDRCAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSIS**********RECDFD***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSMNDPSLTDRCAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGKSVSRFNNALA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q24040	213	Protein big brother OS=Dr	yes	N/A	0.802	0.535	0.756	4e-47
Q24039	213	Protein brother OS=Drosop	no	N/A	0.809	0.539	0.603	5e-37
Q13951	182	Core-binding factor subun	yes	N/A	0.661	0.516	0.595	4e-28
Q08024	187	Core-binding factor subun	yes	N/A	0.661	0.502	0.595	6e-28

>sp|Q24040|BGB_DROME Protein big brother OS=Drosophila melanogaster GN=Bgb PE=2 SV=3

 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 101/119 (84%), Gaps = 5/119 (4%)

Query: 14  AQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDR 73
           A L+ M+P+D IGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTG+R+R
Sbjct: 5   AALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGYRER 64

Query: 74  PQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
             EERQVRF NGCREGHTE +F+A+GTN+QLVFN   + N Y      +ECDFDKEHGK
Sbjct: 65  SIEERQVRFMNGCREGHTEASFVASGTNLQLVFNA--NQNPY---LHDKECDFDKEHGK 118

Regulates the DNA-binding properties of Runt.
Drosophila melanogaster (taxid: 7227)

>sp|Q24039|BRO_DROME Protein brother OS=Drosophila melanogaster GN=Bro PE=2 SV=2

 Score =  152 bits (384), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 97/121 (80%), Gaps = 6/121 (4%)

Query: 13  CAQLSGMLP-FDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFR 71
            A ++GM+P ++ + +YEQPKPRFIFKMPRVVPDQ+SKF+SDELFRRLSRESEVRYTG+R
Sbjct: 10  AAAMNGMIPPYEAMAMYEQPKPRFIFKMPRVVPDQRSKFDSDELFRRLSRESEVRYTGYR 69

Query: 72  DRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHG 131
           +R  EER++RF N CR+G+ EI+ +A+GTN+QL FN   + N Y      ++CDF++E G
Sbjct: 70  ERAMEERRMRFVNDCRKGYAEISMVASGTNLQLYFN--ANHNPY---AQEQDCDFERERG 124

Query: 132 K 132
           K
Sbjct: 125 K 125

Regulates the DNA-binding properties of Runt.

Drosophila melanogaster (taxid: 7227)

>sp|Q13951|PEBB_HUMAN Core-binding factor subunit beta OS=Homo sapiens GN=CBFB PE=1 SV=2

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 69/94 (73%)

Query: 39  MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
           MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60

Query: 99  GTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
           GTN+ L F P+         P     D ++E GK
Sbjct: 61  GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 94

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL3 and GM-CSF promoters. CBFB enhances DNA binding by RUNX1.

Homo sapiens (taxid: 9606)

>sp|Q08024|PEBB_MOUSE Core-binding factor subunit beta OS=Mus musculus GN=Cbfb PE=1 SV=1

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 69/94 (73%)

Query: 39  MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
           MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVAT 60

Query: 99  GTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
           GTN+ L F P+         P     D ++E GK
Sbjct: 61  GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 94

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL3 and GM-CSF promoters. CBFB enhances DNA binding by RUNX1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
242005456	146	protein big brother, putative [Pediculus	0.873	0.849	0.818	1e-54
91082337	274	PREDICTED: similar to GA20722-PA [Tribol	0.859	0.445	0.772	2e-50
270007182	231	hypothetical protein TcasGA2_TC013723 [T	0.859	0.528	0.772	2e-50
215422334	246	big brother [Nasonia vitripennis]	0.781	0.451	0.791	1e-46
307186294	262	Protein big brother [Camponotus floridan	0.781	0.423	0.784	1e-45
195012243	214	GH15954 [Drosophila grimshawi] gi|193897	0.838	0.556	0.725	2e-45
195375156	214	GJ12861 [Drosophila virilis] gi|19415352	0.838	0.556	0.717	2e-45
195135405	214	GI16606 [Drosophila mojavensis] gi|19391	0.838	0.556	0.717	2e-45
28574268	213	Big brother, isoform A [Drosophila melan	0.802	0.535	0.756	3e-45
442629495	253	Big brother, isoform B [Drosophila melan	0.802	0.450	0.756	3e-45

>gi|242005456|ref|XP_002423581.1| protein big brother, putative [Pediculus humanus corporis] gi|212506729|gb|EEB10843.1| protein big brother, putative [Pediculus humanus corporis]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/132 (81%), Positives = 113/132 (85%), Gaps = 8/132 (6%)

Query: 4   MNDPSLTDRCAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRES 63
           MNDPS       L+GMLPFD IGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRES
Sbjct: 1   MNDPS------ALAGMLPFDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRES 54

Query: 64  EVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRE 123
           EVRYTG+RDRPQEERQVRFQNGCREGHTEIAF+ATGTNIQLVFNP  ++N Y      RE
Sbjct: 55  EVRYTGYRDRPQEERQVRFQNGCREGHTEIAFVATGTNIQLVFNP--ASNGYSTVDLGRE 112

Query: 124 CDFDKEHGKSVS 135
           CDFDKEHGK  S
Sbjct: 113 CDFDKEHGKCDS 124

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082337|ref|XP_966458.1| PREDICTED: similar to GA20722-PA [Tribolium castaneum]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/132 (77%), Positives = 111/132 (84%), Gaps = 10/132 (7%)

Query: 1   MLSMNDPSLTDRCAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLS 60
           M SMNDP+     + L+GMLPF+ IGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLS
Sbjct: 1   MHSMNDPT-----SALAGMLPFESIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLS 55

Query: 61  RESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPP 120
           RESEVRYTG+RDRPQEERQVRFQN CREGHTEIAF ATGTN+QLVF P  +    +M  P
Sbjct: 56  RESEVRYTGYRDRPQEERQVRFQNACREGHTEIAFAATGTNLQLVFTPPTTG---YM--P 110

Query: 121 SRECDFDKEHGK 132
            +ECDFDKE GK
Sbjct: 111 DKECDFDKEPGK 122

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007182|gb|EFA03630.1| hypothetical protein TcasGA2_TC013723 [Tribolium castaneum]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/132 (77%), Positives = 111/132 (84%), Gaps = 10/132 (7%)

Query: 1   MLSMNDPSLTDRCAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLS 60
           M SMNDP+     + L+GMLPF+ IGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLS
Sbjct: 1   MHSMNDPT-----SALAGMLPFESIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLS 55

Query: 61  RESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPP 120
           RESEVRYTG+RDRPQEERQVRFQN CREGHTEIAF ATGTN+QLVF P  +    +M  P
Sbjct: 56  RESEVRYTGYRDRPQEERQVRFQNACREGHTEIAFAATGTNLQLVFTPPTTG---YM--P 110

Query: 121 SRECDFDKEHGK 132
            +ECDFDKE GK
Sbjct: 111 DKECDFDKEPGK 122

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215422334|ref|NP_001135856.1| big brother [Nasonia vitripennis]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 101/115 (87%), Gaps = 4/115 (3%)

Query: 18  GMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEE 77
           G+LPFDG+G+YEQP+PR +FKMPRVVPDQKSKFE+DELFRRLSRESEV+YTG+RDRP EE
Sbjct: 17  GVLPFDGMGIYEQPRPRLVFKMPRVVPDQKSKFENDELFRRLSRESEVKYTGYRDRPIEE 76

Query: 78  RQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
           RQVRFQNGCREGHTEIAF ATGTN+QLVF  S    S + A   RECDFDKEHGK
Sbjct: 77  RQVRFQNGCREGHTEIAFAATGTNLQLVFGVS----SGNFAGDPRECDFDKEHGK 127

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186294|gb|EFN71957.1| Protein big brother [Camponotus floridanus]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 103/116 (88%), Gaps = 5/116 (4%)

Query: 18  GMLPFDGIGLYEQPKP-RFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQE 76
           G+LPFDG+GLYEQP+P R +FKMPRVVPDQK+KFESDELFRRLSRESEVRYTG+RDRPQE
Sbjct: 12  GVLPFDGMGLYEQPRPPRLVFKMPRVVPDQKTKFESDELFRRLSRESEVRYTGYRDRPQE 71

Query: 77  ERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
           ERQVRFQNGCREGHTEIAF ATGTN+QLVF    ++ +Y + P   +CDFDKEHGK
Sbjct: 72  ERQVRFQNGCREGHTEIAFAATGTNLQLVF--GNASGNYAVDPC--DCDFDKEHGK 123

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195012243|ref|XP_001983546.1| GH15954 [Drosophila grimshawi] gi|193897028|gb|EDV95894.1| GH15954 [Drosophila grimshawi]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 103/124 (83%), Gaps = 5/124 (4%)

Query: 9   LTDRCAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYT 68
           + +  A L+ M+P+D IGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYT
Sbjct: 1   MMNEAAALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYT 60

Query: 69  GFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDK 128
           G+R+R  EERQVRF NGCREGHTE +F+A+GTN+QLVFN   + N Y      +ECDFDK
Sbjct: 61  GYRERSIEERQVRFMNGCREGHTEASFVASGTNLQLVFNA--NQNPY---LHDKECDFDK 115

Query: 129 EHGK 132
           EHGK
Sbjct: 116 EHGK 119

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195375156|ref|XP_002046369.1| GJ12861 [Drosophila virilis] gi|194153527|gb|EDW68711.1| GJ12861 [Drosophila virilis]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 103/124 (83%), Gaps = 5/124 (4%)

Query: 9   LTDRCAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYT 68
           + +  A L+ M+P+D IGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESE+RYT
Sbjct: 1   MMNEAAALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEIRYT 60

Query: 69  GFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDK 128
           G+R+R  EERQVRF NGCREGHTE +F+A+GTN+QLVFN   + N Y      +ECDFDK
Sbjct: 61  GYRERSIEERQVRFMNGCREGHTETSFVASGTNLQLVFNA--NQNPY---LHDKECDFDK 115

Query: 129 EHGK 132
           EHGK
Sbjct: 116 EHGK 119

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195135405|ref|XP_002012123.1| GI16606 [Drosophila mojavensis] gi|193918387|gb|EDW17254.1| GI16606 [Drosophila mojavensis]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 103/124 (83%), Gaps = 5/124 (4%)

Query: 9   LTDRCAQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYT 68
           + +  A L+ M+P+D IGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESE+RYT
Sbjct: 1   MMNEAAALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEIRYT 60

Query: 69  GFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDK 128
           G+R+R  EERQVRF NGCREGHTE +F+A+GTN+QLVFN   + N Y      +ECDFDK
Sbjct: 61  GYRERSIEERQVRFMNGCREGHTETSFVASGTNLQLVFNA--NQNPY---LHDKECDFDK 115

Query: 129 EHGK 132
           EHGK
Sbjct: 116 EHGK 119

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28574268|ref|NP_477065.3| Big brother, isoform A [Drosophila melanogaster] gi|194864912|ref|XP_001971169.1| GG14808 [Drosophila erecta] gi|195336646|ref|XP_002034946.1| GM14430 [Drosophila sechellia] gi|195490480|ref|XP_002093158.1| GE21171 [Drosophila yakuba] gi|195552535|ref|XP_002076498.1| GD17621 [Drosophila simulans] gi|41019476|sp|Q24040.3|BGB_DROME RecName: Full=Protein big brother gi|16198333|gb|AAL14013.1| SD08175p [Drosophila melanogaster] gi|28380426|gb|AAF47533.3| Big brother, isoform A [Drosophila melanogaster] gi|190652952|gb|EDV50195.1| GG14808 [Drosophila erecta] gi|194128039|gb|EDW50082.1| GM14430 [Drosophila sechellia] gi|194179259|gb|EDW92870.1| GE21171 [Drosophila yakuba] gi|194202109|gb|EDX15685.1| GD17621 [Drosophila simulans] gi|220942220|gb|ACL83653.1| Bgb-PA [synthetic construct] gi|220952434|gb|ACL88760.1| Bgb-PA [synthetic construct]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 101/119 (84%), Gaps = 5/119 (4%)

Query: 14  AQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDR 73
           A L+ M+P+D IGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTG+R+R
Sbjct: 5   AALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGYRER 64

Query: 74  PQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
             EERQVRF NGCREGHTE +F+A+GTN+QLVFN   + N Y      +ECDFDKEHGK
Sbjct: 65  SIEERQVRFMNGCREGHTEASFVASGTNLQLVFNA--NQNPY---LHDKECDFDKEHGK 118

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442629495|ref|NP_001261271.1| Big brother, isoform B [Drosophila melanogaster] gi|440215138|gb|AGB93966.1| Big brother, isoform B [Drosophila melanogaster]

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/119 (75%), Positives = 101/119 (84%), Gaps = 5/119 (4%)

Query: 14  AQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDR 73
           A L+ M+P+D IGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTG+R+R
Sbjct: 5   AALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGYRER 64

Query: 74  PQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
             EERQVRF NGCREGHTE +F+A+GTN+QLVFN   + N Y      +ECDFDKEHGK
Sbjct: 65  SIEERQVRFMNGCREGHTEASFVASGTNLQLVFNA--NQNPY---LHDKECDFDKEHGK 118

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
FB|FBgn0013753	213	Bgb "Big brother" [Drosophila	0.795	0.530	0.758	1.9e-44
FB|FBgn0013755	213	Bro "Brother" [Drosophila mela	0.802	0.535	0.608	2.7e-36
UNIPROTKB|E1B9S8	182	CBFB "Uncharacterized protein"	0.654	0.510	0.642	2.4e-28
ZFIN|ZDB-GENE-980526-440	187	cbfb "core-binding factor, bet	0.661	0.502	0.617	2.4e-28
UNIPROTKB|Q13951	182	CBFB "Core-binding factor subu	0.654	0.510	0.631	1e-27
MGI|MGI:99851	187	Cbfb "core binding factor beta	0.654	0.497	0.631	1e-27
RGD|620493	182	Cbfb "core-binding factor, bet	0.654	0.510	0.631	1e-27
UNIPROTKB|D4A1S4	154	Cbfb "Protein Cbfb" [Rattus no	0.654	0.603	0.631	1e-27
UNIPROTKB|H3BSC0	93	CBFB "Core-binding factor subu	0.408	0.623	0.706	3.5e-20
UNIPROTKB|D4ADR8	147	Cbfb "Protein Cbfb" [Rattus no	0.408	0.394	0.706	3.5e-20

FB|FBgn0013753 Bgb "Big brother" [Drosophila melanogaster (taxid:7227)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 91/120 (75%), Positives = 102/120 (85%)

Query:    14 AQLSGMLPFDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDR 73
             A L+ M+P+D IGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTG+R+R
Sbjct:     5 AALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGYRER 64

Query:    74 PQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSY-HMAPPSRECDFDKEHGK 132
               EERQVRF NGCREGHTE +F+A+GTN+QLVFN +   N Y H     +ECDFDKEHGK
Sbjct:    65 SIEERQVRFMNGCREGHTEASFVASGTNLQLVFNAN--QNPYLH----DKECDFDKEHGK 118

GO:0003713 "transcription coactivator activity" evidence=ISS;IDA;IPI

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0016513 "core-binding factor complex" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=TAS

GO:0008134 "transcription factor binding" evidence=TAS

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

FB|FBgn0013755 Bro "Brother" [Drosophila melanogaster (taxid:7227)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 73/120 (60%), Positives = 97/120 (80%)

Query:    14 AQLSGMLP-FDGIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTGFRD 72
             A ++GM+P ++ + +YEQPKPRFIFKMPRVVPDQ+SKF+SDELFRRLSRESEVRYTG+R+
Sbjct:    11 AAMNGMIPPYEAMAMYEQPKPRFIFKMPRVVPDQRSKFDSDELFRRLSRESEVRYTGYRE 70

Query:    73 RPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
             R  EER++RF N CR+G+ EI+ +A+GTN+QL FN +   N Y      ++CDF++E GK
Sbjct:    71 RAMEERRMRFVNDCRKGYAEISMVASGTNLQLYFNAN--HNPYAQ---EQDCDFERERGK 125

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0003713 "transcription coactivator activity" evidence=ISS;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0016513 "core-binding factor complex" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0048749 "compound eye development" evidence=TAS

GO:0008134 "transcription factor binding" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=TAS

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

UNIPROTKB|E1B9S8 CBFB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 61/95 (64%), Positives = 74/95 (77%)

Query:    39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
             MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct:     1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60

Query:    99 GTNIQLVFNPSISANSYHMAPPSRE-CDFDKEHGK 132
             GTN+ L F P+ S        PSRE  DF++E GK
Sbjct:    61 GTNLSLQFFPA-SWQGEQRQTPSREYVDFEREAGK 94

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0030098 "lymphocyte differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

ZFIN|ZDB-GENE-980526-440 cbfb "core-binding factor, beta subunit" [Danio rerio (taxid:7955)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 58/94 (61%), Positives = 71/94 (75%)

Query:    39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
             MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct:     1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60

Query:    99 GTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
             GTN+ L F P+        AP     DF++E GK
Sbjct:    61 GTNLSLQFFPANLHGDQRQAPTREYVDFERETGK 94

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IC

GO:0000988 "protein binding transcription factor activity" evidence=IC

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0016513 "core-binding factor complex" evidence=IPI

GO:0003677 "DNA binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0060047 "heart contraction" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0048769 "sarcomerogenesis" evidence=IMP

UNIPROTKB|Q13951 CBFB "Core-binding factor subunit beta" [Homo sapiens (taxid:9606)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 60/95 (63%), Positives = 73/95 (76%)

Query:    39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
             MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct:     1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60

Query:    99 GTNIQLVFNPSISANSYHMAPPSRE-CDFDKEHGK 132
             GTN+ L F P+ S        PSRE  D ++E GK
Sbjct:    61 GTNLSLQFFPA-SWQGEQRQTPSREYVDLEREAGK 94

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0030098 "lymphocyte differentiation" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

MGI|MGI:99851 Cbfb "core binding factor beta" [Mus musculus (taxid:10090)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 60/95 (63%), Positives = 73/95 (76%)

Query:    39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
             MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct:     1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVAT 60

Query:    99 GTNIQLVFNPSISANSYHMAPPSRE-CDFDKEHGK 132
             GTN+ L F P+ S        PSRE  D ++E GK
Sbjct:    61 GTNLSLQFFPA-SWQGEQRQTPSREYVDLEREAGK 94

GO:0001503 "ossification" evidence=IMP

GO:0001649 "osteoblast differentiation" evidence=IMP

GO:0003677 "DNA binding" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0030098 "lymphocyte differentiation" evidence=IMP

GO:0030099 "myeloid cell differentiation" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0048469 "cell maturation" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

RGD|620493 Cbfb "core-binding factor, beta subunit" [Rattus norvegicus (taxid:10116)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 60/95 (63%), Positives = 73/95 (76%)

Query:    39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
             MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct:     1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVAT 60

Query:    99 GTNIQLVFNPSISANSYHMAPPSRE-CDFDKEHGK 132
             GTN+ L F P+ S        PSRE  D ++E GK
Sbjct:    61 GTNLSLQFFPA-SWQGEQRQTPSREYVDLEREAGK 94

GO:0001503 "ossification" evidence=ISO

GO:0001649 "osteoblast differentiation" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0030098 "lymphocyte differentiation" evidence=IEA;ISO

GO:0030099 "myeloid cell differentiation" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048469 "cell maturation" evidence=IEA;ISO

GO:0060216 "definitive hemopoiesis" evidence=IEA;ISO

UNIPROTKB|D4A1S4 Cbfb "Protein Cbfb" [Rattus norvegicus (taxid:10116)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 60/95 (63%), Positives = 73/95 (76%)

Query:    39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
             MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct:     1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVAT 60

Query:    99 GTNIQLVFNPSISANSYHMAPPSRE-CDFDKEHGK 132
             GTN+ L F P+ S        PSRE  D ++E GK
Sbjct:    61 GTNLSLQFFPA-SWQGEQRQTPSREYVDLEREAGK 94

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|H3BSC0 CBFB "Core-binding factor subunit beta" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 41/58 (70%), Positives = 51/58 (87%)

Query:    39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFI 96
             MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EI ++
Sbjct:     1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIVYL 58

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|D4ADR8 Cbfb "Protein Cbfb" [Rattus norvegicus (taxid:10116)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 41/58 (70%), Positives = 51/58 (87%)

Query:    39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFI 96
             MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EI ++
Sbjct:     1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIVYL 58

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13951	PEBB_HUMAN	No assigned EC number	0.5957	0.6619	0.5164	yes	N/A
Q08024	PEBB_MOUSE	No assigned EC number	0.5957	0.6619	0.5026	yes	N/A
Q24040	BGB_DROME	No assigned EC number	0.7563	0.8028	0.5352	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	142
pfam02312	170	pfam02312, CBF_beta, Core binding factor beta subu	5e-47

>gnl|CDD|216970 pfam02312, CBF_beta, Core binding factor beta subunit

 Score =  149 bits (378), Expect = 5e-47
 Identities = 60/94 (63%), Positives = 75/94 (79%), Gaps = 5/94 (5%)

Query: 39  MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
           MPRVVPDQ+SKFESDELFR+LSRESE++YTG+RDRP EER+ RFQN CREGH E++F+A+
Sbjct: 1   MPRVVPDQRSKFESDELFRKLSRESEIKYTGYRDRPAEERRDRFQNHCREGHAELSFVAS 60

Query: 99  GTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
           GTN+QL FNP  ++   +        DFD+E GK
Sbjct: 61  GTNLQLQFNP--NSTIGNQ---KEYVDFDREPGK 89

Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF02312	169	CBF_beta: Core binding factor beta subunit; InterP	100.0
KOG4785|consensus	177		100.0

>PF02312 CBF_beta: Core binding factor beta subunit; InterPro: IPR003417 Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis

Probab=100.00  E-value=9.6e-55  Score=344.89  Aligned_cols=95  Identities=69%  Similarity=1.089  Sum_probs=84.3

Q ss_pred             cCcccCcccccccchHHHHhhhccccceecccCCCChHHHHHHhhhhccCCceeEEEeeecceeEEEeccccCCCCCCCC
Q psy445           39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMA  118 (142)
Q Consensus        39 MPRVVPDQK~KFEsDElFRrLSREsEIrYTGfrDRp~eERq~RFq~~CReGh~eiaFvaTGtNl~L~F~p~~~~~~~~~~  118 (142)
                      |||||||||+||||||||||||||||||||||||||+||||+||||+||+||+|||||||||||+|+|+|++|....   
T Consensus         1 MpRvvpdQk~kFEsde~frkLSresEikytg~rdrp~eER~~rF~~~creg~~eiaF~~tGtNl~L~f~~~~~~~~~---   77 (169)
T PF02312_consen    1 MPRVVPDQKSKFESDELFRKLSRESEIKYTGFRDRPHEERQMRFQNSCREGHAEIAFVATGTNLQLQFFPASWGYEE---   77 (169)
T ss_dssp             --SS-TTHHHHHHH-HHHHHHHSCEEEEE-TCCSS-HHHHHHHHHHHHHCTEEEEEETTTTEEEEEESS-TTSSSSS---
T ss_pred             CCccccchhhcccchHHHHHhccchhhcccccccCCcHHHHHHHHHhhhcCceeEEEEeccccceEeeccccCCCcc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999775543   


Q ss_pred             CCCCCccccCCCceeEeecc
Q psy445          119 PPSRECDFDKEHGKSVSRFN  138 (142)
Q Consensus       119 ~~~~~~DFdkE~GKVhlk~~  138 (142)
                        +++||||||+|||||+|+
T Consensus        78 --~~~~df~~e~GKV~l~s~   95 (169)
T PF02312_consen   78 --DEYCDFEKEPGKVHLKSP   95 (169)
T ss_dssp             --TTTCESSTTTTCEEEEEE
T ss_pred             --cccccccccccceEeecc
Confidence              589999999999999986

The beta subunit binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including Murine leukemia virus, Polyomavirus enhancer, T-cell receptor enhancers etc. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold []. Also included in this family are the Drosophila melanogaster brother and big brother proteins, which regulate the DNA-binding properties of Runt.; GO: 0003713 transcription coactivator activity, 0005634 nucleus; PDB: 2JHB_A 1IO4_D 1ILF_A 1CL3_A 1H9D_B 1E50_H.

>KOG4785|consensus

Probab=100.00  E-value=1.4e-48  Score=310.34  Aligned_cols=95  Identities=59%  Similarity=0.990  Sum_probs=91.6

Q ss_pred             cCcccCcccccccchHHHHhhhccccceecccCCCChHHHHHHhhhhccCCceeEEEeeecceeEEEeccccCCCCCCCC
Q psy445           39 MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMA  118 (142)
Q Consensus        39 MPRVVPDQK~KFEsDElFRrLSREsEIrYTGfrDRp~eERq~RFq~~CReGh~eiaFvaTGtNl~L~F~p~~~~~~~~~~  118 (142)
                      |||||||||||||||||||||||+|||||||||+|||||||.||+|.||+||+||+||||||||+|+|+.+     +.+.
T Consensus         1 MpRvvpDQ~SkFe~Deffr~LSre~E~kytgfr~rp~eERqeRF~n~cr~g~~e~sFvatGtNl~l~f~~~-----q~qt   75 (177)
T KOG4785|consen    1 MPRVVPDQRSKFENDEFFRKLSRECEIKYTGFRDRPHEERQERFQNACRDGRSEIAFVATGTNLSLQFFGE-----QRQT   75 (177)
T ss_pred             CCccccchhcccchHHHHHHhhhhhhheecccccCchHHHHHHHHHHhhcCCceeeEEeecCceeEEEeec-----cCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988     5566


Q ss_pred             CCCCCccccCCCceeEeecc
Q psy445          119 PPSRECDFDKEHGKSVSRFN  138 (142)
Q Consensus       119 ~~~~~~DFdkE~GKVhlk~~  138 (142)
                      +++++|||+||+||||||+.
T Consensus        76 ~~~e~~d~~re~gkv~~k~p   95 (177)
T KOG4785|consen   76 PSREYVDLEREAGKVYLKAP   95 (177)
T ss_pred             CcchhhhhhhhcCceecccc
Confidence            68999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
2jhb_A	143	Core Binding Factor Beta Length = 143		5e-29
1io4_D	141	Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN		5e-29
1h9d_B	134	Aml1CBF-BetaDNA COMPLEX Length = 134		3e-28
1cl3_A	138	Molecular Insights Into Pebp2CBF-Smmhc Associated A		2e-26

>pdb|2JHB|A Chain A, Core Binding Factor Beta Length = 143

Iteration: 1
 Score =  122 bits (307), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 69/94 (73%)
Query: 39  MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
           MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct: 3   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVAT 62
Query: 99  GTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
           GTN+ L F P+         P     D ++E GK
Sbjct: 63  GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 96

>pdb|1IO4|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN- Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP Homodimer Bound To A Dna Fragment From The Csf-1r Promoter Length = 141

Iteration: 1
 Score =  122 bits (307), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/94 (59%), Positives = 69/94 (73%)
Query: 39  MPRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIAT 98
           MPRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+AT
Sbjct: 1   MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVAT 60
Query: 99  GTNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
           GTN+ L F P+         P     D ++E GK
Sbjct: 61  GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 94

>pdb|1H9D|B Chain B, Aml1CBF-BetaDNA COMPLEX Length = 134

Iteration: 1
 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 68/93 (73%)
Query: 40  PRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATG 99
           PRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+ATG
Sbjct: 1   PRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATG 60
Query: 100 TNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
           TN+ L F P+         P     D ++E GK
Sbjct: 61  TNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 93

>pdb|1CL3|A Chain A, Molecular Insights Into Pebp2CBF-Smmhc Associated Acute Leukemia Revealed From The Three-Dimensional Structure Of Pebp2CBF BETA Length = 138

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 65/90 (72%)
Query: 43  VPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNI 102
           VPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+ATGTN+
Sbjct: 2   VPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQTRFQNACRDGRSEIAFVATGTNL 61
Query: 103 QLVFNPSISANSYHMAPPSRECDFDKEHGK 132
            L F P+         P     D ++E GK
Sbjct: 62  SLQFFPASWQGEQRQTPSREYVDLEREAGK 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1e50_B	134	Core-binding factor CBF-beta; transcription factor	1e-48

>1e50_B Core-binding factor CBF-beta; transcription factor, transcription; 2.60A {Homo sapiens} SCOP: b.54.1.1 PDB: 1h9d_B* 1ilf_A 1io4_D 2jhb_A 1cl3_A Length = 134

 Score =  152 bits (384), Expect = 1e-48
 Identities = 55/93 (59%), Positives = 68/93 (73%)

Query: 40  PRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATG 99
           PRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+ATG
Sbjct: 1   PRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATG 60

Query: 100 TNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
           TN+ L F P+         P     D ++E GK
Sbjct: 61  TNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
1e50_B	134	Core-binding factor CBF-beta; transcription factor	100.0

>1e50_B Core-binding factor CBF-beta; transcription factor, transcription; 2.60A {Homo sapiens} SCOP: b.54.1.1 PDB: 1h9d_B* 1ilf_A 1io4_D 2jhb_A 1cl3_A

Probab=100.00  E-value=3.1e-58  Score=353.35  Aligned_cols=99  Identities=56%  Similarity=0.954  Sum_probs=94.0

Q ss_pred             CcccCcccccccchHHHHhhhccccceecccCCCChHHHHHHhhhhccCCceeEEEeeecceeEEEeccccCCCCCCCCC
Q psy445           40 PRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAP  119 (142)
Q Consensus        40 PRVVPDQK~KFEsDElFRrLSREsEIrYTGfrDRp~eERq~RFq~~CReGh~eiaFvaTGtNl~L~F~p~~~~~~~~~~~  119 (142)
                      ||||||||+||||||||||||||||||||||||||+||||+||||+|||||+||||||||||++|+|+|++|+++.+++|
T Consensus         1 PRVvpdQk~kFEsDelfrkLsresEikytgfrdrp~eERr~rF~~~creg~~eiaFv~tGtNl~L~f~~~~~~~~~~~~~   80 (134)
T 1e50_B            1 PRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTP   80 (134)
T ss_dssp             CCCCSCHHHHHHHCHHHHTTSSCEEEEECTTSSSCHHHHHHHHHHHHHTTEEEEEETTTTBCCEEECSCTTC----CCCC
T ss_pred             CcccchhhhcccchHHHHHhcccceeeeeccccCChHHHHHHHHHhhhcCceEEEEEecccceeEEeccccccccCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCceeEeecc
Q psy445          120 PSRECDFDKEHGKSVSRFN  138 (142)
Q Consensus       120 ~~~~~DFdkE~GKVhlk~~  138 (142)
                      ++++||||||+|||||||.
T Consensus        81 ~~~~~dfdke~gkV~~~S~   99 (134)
T 1e50_B           81 SREYVDLEREAGKVYLKAP   99 (134)
T ss_dssp             CTTTEESSSSTTEEEEEEE
T ss_pred             chhhcccccCCceEEEEcc
Confidence            9999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1e50b_	134	b.54.1.1 (B:) Core binding factor beta, CBF {Human	1e-48

>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: Core binding factor beta, CBF
superfamily: Core binding factor beta, CBF
family: Core binding factor beta, CBF
domain: Core binding factor beta, CBF
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (381), Expect = 1e-48
 Identities = 55/93 (59%), Positives = 68/93 (73%)

Query: 40  PRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATG 99
           PRVVPDQ+SKFE++E FR+LSRE E++YTGFRDRP EERQ RFQN CR+G +EIAF+ATG
Sbjct: 1   PRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATG 60

Query: 100 TNIQLVFNPSISANSYHMAPPSRECDFDKEHGK 132
           TN+ L F P+         P     D ++E GK
Sbjct: 61  TNLSLQFFPASWQGEQRQTPSREYVDLEREAGK 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1e50b_	134	Core binding factor beta, CBF {Human (Homo sapiens	100.0

>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Core binding factor beta, CBF
superfamily: Core binding factor beta, CBF
family: Core binding factor beta, CBF
domain: Core binding factor beta, CBF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-59  Score=358.72  Aligned_cols=99  Identities=56%  Similarity=0.954  Sum_probs=93.6

Q ss_pred             CcccCcccccccchHHHHhhhccccceecccCCCChHHHHHHhhhhccCCceeEEEeeecceeEEEeccccCCCCCCCCC
Q psy445           40 PRVVPDQKSKFESDELFRRLSRESEVRYTGFRDRPQEERQVRFQNGCREGHTEIAFIATGTNIQLVFNPSISANSYHMAP  119 (142)
Q Consensus        40 PRVVPDQK~KFEsDElFRrLSREsEIrYTGfrDRp~eERq~RFq~~CReGh~eiaFvaTGtNl~L~F~p~~~~~~~~~~~  119 (142)
                      ||||||||+|||||||||||||||||||||||||||||||+|||++|||||++||||||||||+|+|+|++|.+.+.+.+
T Consensus         1 PRVVpDQk~KFEsDelFrkLSresEikyTgfrdrp~eER~~RFq~~creg~~eiaFvatGtNl~L~f~p~~~~~~~~~~~   80 (134)
T d1e50b_           1 PRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTP   80 (134)
T ss_dssp             CCCCSCHHHHHHHCHHHHTTSSCEEEEECTTSSSCHHHHHHHHHHHHHTTEEEEEETTTTBCCEEECSCTTC----CCCC
T ss_pred             CcccchhhhcccchHHHHHhcccceeeeecCCcCChHHHHHHHHHhhhcCcceEEEEeeccceeEEeccCCCCCcccccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998888888999


Q ss_pred             CCCCccccCCCceeEeecc
Q psy445          120 PSRECDFDKEHGKSVSRFN  138 (142)
Q Consensus       120 ~~~~~DFdkE~GKVhlk~~  138 (142)
                      +.++||||||+|||||||+
T Consensus        81 ~~~~~dFdke~Gkvhl~s~   99 (134)
T d1e50b_          81 SREYVDLEREAGKVYLKAP   99 (134)
T ss_dssp             CTTTEESSSSTTEEEEEEE
T ss_pred             CccccccccccCeeeeecc
Confidence            9999999999999999996