Psyllid ID: psy4485

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRSSDFYRNIYTFHNSVV
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccEEEEEEEccccccEEEEEEEEcccccccccccEEEHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccHEEccccccHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEcccccccEEEEEEEEcccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mslndsqwevidptpdiHGLFVAFAKRFFQDRLGSvevkwskrmtsgAVVSVVDfgsggwwfesksnlgnpsfyrssdfyrniytFHNSVV
Flexible Loop (DISEMBL)
mslndsqwevidptPDIHGLFVAFAKRFFQDRLGSVevkwskrmtsgAVVSVVDFGSGGWWFESKSNLGNPSFYRSSDFYRNIYTFHNSVV
Low Complexity Region (SEG)
MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRSSDFYRNIYTFHNSVV
Disordered region (IsUnstruct)
*******WEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRSSDFYRNIYTFH****
Disordered Region (DISOPRED)
*SLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRSSDFYRNIYTFHNSVV
Disordered Region (DISEMBL)
MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRSSDFYRNIYTFHNSVV
Disordered Region (DISPRO)
MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRSSDFYRNIYTFHNSV*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRSSDFYRNIYTFHNSVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
D3ZVU1	496	SprT-like domain-containi	no	N/A	0.637	0.116	0.508	2e-10
A5D979	487	SprT-like domain-containi	yes	N/A	0.637	0.119	0.542	2e-10
G3X912	497	SprT-like domain-containi	yes	N/A	0.637	0.116	0.508	2e-10
Q9H040	489	SprT-like domain-containi	no	N/A	0.637	0.118	0.508	1e-09
F6UH96	436	SprT-like domain-containi	no	N/A	0.637	0.133	0.474	4e-08
Q22557	368	SprT-like domain-containi	yes	N/A	0.637	0.157	0.466	6e-08

>sp|D3ZVU1|SPRTN_RAT SprT-like domain-containing protein Spartan OS=Rattus norvegicus GN=Sprtn PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 1  MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
          +SL D+ WE++DPTPD+  LF+ F  RFF  +L +VEVKWS RMT  A +   + G GG
Sbjct: 29 LSLVDASWELVDPTPDLQALFLQFNDRFFWGQLEAVEVKWSVRMTLCAGICTYE-GRGG 86

Regulator of UV-induced DNA damage response: acts as a 'reader' of ubiquitinated PCNA that enhances RAD18-mediated PCNA ubiquitination and translesion DNA synthesis (TLS). Recruited to sites of UV damage and interacts with ubiquitinated PCNA and RAD18, the E3 ubiquitin ligase that monoubiquitinates PCNA. Facilitates chromatin association of RAD18 and is required for efficient PCNA monoubiquitination, promoting a feed-forward loop to enhance PCNA ubiquitination and translesion DNA synthesis. Acts as a regulator of TLS by recruiting VCP/p97 to sites of DNA damage, possibly leading to extraction of DNA polymerase eta (POLH) by VCP/p97 to prevent excessive translesion DNA synthesis and limit the incidence of mutations induced by DNA damage.
Rattus norvegicus (taxid: 10116)

>sp|A5D979|SPRTN_BOVIN SprT-like domain-containing protein Spartan OS=Bos taurus GN=SPRTN PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 1  MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
          +SL D+ WE++DPTPD+ GLFV F  RFF  +L +VEVKWS RMT  A +   + G GG
Sbjct: 29 LSLVDASWELVDPTPDLQGLFVLFNDRFFWGQLEAVEVKWSVRMTLCAGICSYE-GRGG 86

Bos taurus (taxid: 9913)

>sp|G3X912|SPRTN_MOUSE SprT-like domain-containing protein Spartan OS=Mus musculus GN=Sprtn PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 1  MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
          +SL D+ WE++DPTPD+  LF+ F  RFF  +L +VEVKWS RMT  A +   + G GG
Sbjct: 30 VSLVDASWELVDPTPDLQALFLQFNDRFFWGQLEAVEVKWSVRMTLCAGICTYE-GRGG 87

Regulator of UV-induced DNA damage response: acts as a 'reader' of ubiquitinated PCNA that enhances RAD18-mediated PCNA ubiquitination and translesion DNA synthesis (TLS). Recruited to sites of UV damage and interacts with ubiquitinated PCNA and RAD18, the E3 ubiquitin ligase that monoubiquitinates PCNA. Facilitates chromatin association of RAD18 and is required for efficient PCNA monoubiquitination, promoting a feed-forward loop to enhance PCNA ubiquitination and translesion DNA synthesis. Acts as a regulator of TLS by recruiting VCP/p97 to sites of DNA damage, possibly leading to extraction of DNA polymerase eta (POLH) by VCP/p97 to prevent excessive translesion DNA synthesis and limit the incidence of mutations induced by DNA damage.

Mus musculus (taxid: 10090)

>sp|Q9H040|SPRTN_HUMAN SprT-like domain-containing protein Spartan OS=Homo sapiens GN=SPRTN PE=1 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 1  MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
          +SL D+ WE++DPTPD+  LFV F  +FF  +L +VEVKWS RMT  A +   + G GG
Sbjct: 29 LSLVDASWELVDPTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTLCAGICSYE-GKGG 86

Homo sapiens (taxid: 9606)

>sp|F6UH96|SPRTN_XENTR SprT-like domain-containing protein Spartan OS=Xenopus tropicalis GN=sprtn PE=2 SV=2

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 1  MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
          +S+ D  WE++DP PDI  LF+ F   FF  +L  +EVKWS RMT  A V   + G GG
Sbjct: 3  LSVVDPTWELLDPNPDIRALFLEFNDTFFWGQLSGIEVKWSARMTLCAGVCSYE-GRGG 60

Regulator of UV-induced DNA damage response: acts as a 'reader' of ubiquitinated pcna.

Xenopus tropicalis (taxid: 8364)

>sp|Q22557|SPRTN_CAEEL SprT-like domain-containing protein Spartan OS=Caenorhabditis elegans GN=dvc-1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 2  SLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDF--GSGG 59
          SL D  +E+ DP PDIH LF+ F  RFF   L   EVKWS RM + A +   +   G GG
Sbjct: 5  SLVDPSFELSDPCPDIHALFIQFDARFFGGSLACCEVKWSPRMYACAGICSYEIRGGRGG 64

Regulator of UV-induced DNA damage response: required to protect genome stability during DNA replication, possibly via recruitment of vcp/p97 (cdc-48.1 or cdc-48.2) recruitment.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
24642195	724	CG9203 [Drosophila melanogaster] gi|7293	0.527	0.066	0.541	2e-10
242397549	752	MIP11944p [Drosophila melanogaster]	0.527	0.063	0.541	3e-10
444727674	487	hypothetical protein TREES_T100003864 [T	0.637	0.119	0.559	4e-10
91080035	562	PREDICTED: similar to Zinc finger RAD18	0.626	0.101	0.551	6e-10
195356480	1334	GM19503 [Drosophila sechellia] gi|194133	0.527	0.035	0.520	2e-09
195478855	754	GE16043 [Drosophila yakuba] gi|194188198	0.527	0.063	0.562	2e-09
328713600	527	PREDICTED: zinc finger RAD18 domain-cont	0.483	0.083	0.568	4e-09
431895647	487	hypothetical protein PAL_GLEAN10008110 [	0.637	0.119	0.542	4e-09
194894541	752	GG19397 [Drosophila erecta] gi|190649731	0.527	0.063	0.541	4e-09
326431596	456	hypothetical protein PTSG_07499 [Salping	0.593	0.118	0.574	6e-09

>gi|24642195|ref|NP_573032.1| CG9203 [Drosophila melanogaster] gi|7293077|gb|AAF48462.1| CG9203 [Drosophila melanogaster]

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 40/48 (83%)

Query: 1   MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGA 48
           M+L D +WE++DPTPDI+ +F+ F ++FFQ+RLG+V ++WSK+M S A
Sbjct: 108 MNLVDPEWELVDPTPDIYAMFIRFDEKFFQERLGAVSLEWSKKMYSCA 155

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242397549|gb|ACS92864.1| MIP11944p [Drosophila melanogaster]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 40/48 (83%)

Query: 1   MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGA 48
           M+L D +WE++DPTPDI+ +F+ F ++FFQ+RLG+V ++WSK+M S A
Sbjct: 136 MNLVDPEWELVDPTPDIYAMFIRFDEKFFQERLGAVSLEWSKKMYSCA 183

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|444727674|gb|ELW68154.1| hypothetical protein TREES_T100003864 [Tupaia chinensis]

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 1  MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
          +SL D+ WE++DPTPD+ GLFV F  RFF  +L +VEVKWS RMT  A V   + G GG
Sbjct: 29 LSLVDASWELVDPTPDLQGLFVQFNDRFFWGQLEAVEVKWSMRMTLCAGVCSYE-GRGG 86

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91080035|ref|XP_972573.1| PREDICTED: similar to Zinc finger RAD18 domain-containing protein C1orf124 [Tribolium castaneum] gi|270004629|gb|EFA01077.1| hypothetical protein TcasGA2_TC003998 [Tribolium castaneum]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 2   SLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
           SL D  WE++DPTPDIH LF+AF +RFF ++L +V V WSK+MTS A +     G GG
Sbjct: 64  SLIDPSWELVDPTPDIHNLFIAFDQRFFWNKLVAVCVSWSKKMTSCAGICSYS-GRGG 120

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195356480|ref|XP_002044699.1| GM19503 [Drosophila sechellia] gi|194133873|gb|EDW55389.1| GM19503 [Drosophila sechellia]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 39/48 (81%)

Query: 1   MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGA 48
           ++L   QWE++DPTPDI+ +F+ F ++FFQ+RLG+V ++WSK+M S A
Sbjct: 705 INLVHPQWELVDPTPDIYSMFIQFDEKFFQERLGAVSLEWSKKMYSCA 752

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195478855|ref|XP_002100674.1| GE16043 [Drosophila yakuba] gi|194188198|gb|EDX01782.1| GE16043 [Drosophila yakuba]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/48 (56%), Positives = 37/48 (77%)

Query: 1   MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGA 48
           M+L   QWE++DPTPDI  +FV F ++FFQ RLG+V ++WSK+M S A
Sbjct: 110 MNLVHPQWELVDPTPDIFSMFVRFDEKFFQQRLGAVALEWSKKMYSCA 157

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713600|ref|XP_001943450.2| PREDICTED: zinc finger RAD18 domain-containing protein C1orf124 homolog [Acyrthosiphon pisum]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 35/44 (79%)

Query: 2   SLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMT 45
           S+ D  WE++DP PDIHGLF+AF +++F  +L SV ++WSKRMT
Sbjct: 86  SVVDHSWEMLDPNPDIHGLFLAFNRQYFWSKLDSVMIQWSKRMT 129

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|431895647|gb|ELK05073.1| hypothetical protein PAL_GLEAN10008110 [Pteropus alecto]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 1  MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
          +SL D+ WE++DPTPD+  LFV F  RFF  +L +VEVKWS RMT  A V   + G GG
Sbjct: 29 LSLVDASWELVDPTPDLQALFVQFNDRFFWGQLEAVEVKWSMRMTLCAGVCSYE-GRGG 86

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194894541|ref|XP_001978082.1| GG19397 [Drosophila erecta] gi|190649731|gb|EDV47009.1| GG19397 [Drosophila erecta]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 37/48 (77%)

Query: 1   MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGA 48
           M+L   QWE++DPTPDI  +F+ F ++FFQ RLG+V ++WSK+M S A
Sbjct: 109 MNLVHPQWELVDPTPDIFSMFIRFDEKFFQQRLGAVALEWSKKMYSCA 156

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326431596|gb|EGD77166.1| hypothetical protein PTSG_07499 [Salpingoeca sp. ATCC 50818]

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 36/54 (66%)

Query: 1  MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVD 54
          MS+ D  WE IDPTP+IH LF+ F K FF   L  +EVKWSKRMT  A + V D
Sbjct: 39 MSVVDPAWETIDPTPNIHELFLMFNKLFFFGVLAGIEVKWSKRMTLCAGLCVYD 92

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
UNIPROTKB|E1BQ55	355	SPRTN "Uncharacterized protein	0.637	0.163	0.508	8.3e-12
UNIPROTKB|E1BQ54	491	SPRTN "Uncharacterized protein	0.637	0.118	0.508	2.9e-11
UNIPROTKB|A5D979	487	SPRTN "SprT-like domain-contai	0.637	0.119	0.542	1.1e-10
UNIPROTKB|D4AB73	453	Sprtn "Protein RGD1559496" [Ra	0.945	0.189	0.402	1.6e-10
FB|FBgn0030646	724	CG9203 [Drosophila melanogaste	0.527	0.066	0.541	1.6e-10
UNIPROTKB|F1RGT1	483	SPRTN "Uncharacterized protein	0.637	0.120	0.525	2.3e-10
RGD|1559496	496	Sprtn "SprT-like N-terminal do	0.637	0.116	0.508	6.4e-10
UNIPROTKB|E2R5H3	487	SPRTN "Uncharacterized protein	0.637	0.119	0.525	8e-10
MGI|MGI:2685351	497	Sprtn "SprT-like N-terminal do	0.637	0.116	0.508	8.3e-10
UNIPROTKB|Q9H040	489	SPRTN "SprT-like domain-contai	0.637	0.118	0.508	1e-09

UNIPROTKB|E1BQ55 SPRTN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query:     1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
             +S+ D  WE++DP+PD+HGLFV F +  F  RL +VEV WS RMT  A V     G+GG
Sbjct:    39 LSVVDEAWELLDPSPDVHGLFVQFNEALFWGRLAAVEVSWSPRMTLCAGVCKYK-GNGG 96

GO:0003677 "DNA binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|E1BQ54 SPRTN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query:     1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
             +S+ D  WE++DP+PD+HGLFV F +  F  RL +VEV WS RMT  A V     G+GG
Sbjct:    39 LSVVDEAWELLDPSPDVHGLFVQFNEALFWGRLAAVEVSWSPRMTLCAGVCKYK-GNGG 96

GO:0003677 "DNA binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|A5D979 SPRTN "SprT-like domain-containing protein Spartan" [Bos taurus (taxid:9913)]

 Score = 158 (60.7 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query:     1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
             +SL D+ WE++DPTPD+ GLFV F  RFF  +L +VEVKWS RMT  A +   + G GG
Sbjct:    29 LSLVDASWELVDPTPDLQGLFVLFNDRFFWGQLEAVEVKWSVRMTLCAGICSYE-GRGG 86

GO:0043130 "ubiquitin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0070530 "K63-linked polyubiquitin binding" evidence=ISS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISS

GO:0019985 "translesion synthesis" evidence=ISS

GO:0009411 "response to UV" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0005694 "chromosome" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|D4AB73 Sprtn "Protein RGD1559496" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 37/92 (40%), Positives = 49/92 (53%)

Query:     1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGW 60
             +SL D+ WE++DPTPD+  LF+ F  RFF  +L +VEVKWS RMT  A +   + G GG 
Sbjct:    29 LSLVDASWELVDPTPDLQALFLQFNDRFFWGQLEAVEVKWSVRMTLCAGICTYE-GRGGM 87

Query:    61 WFESKSNLGNP--SFYRSSDFYRNIYTFHNSV 90
                    L  P        D     +TFH+ V
Sbjct:    88 ---CSIRLSEPLLKLRPRKDLVEVYHTFHDEV 116

GO:0003677 "DNA binding" evidence=IEA

FB|FBgn0030646 CG9203 [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 26/48 (54%), Positives = 40/48 (83%)

Query:     1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGA 48
             M+L D +WE++DPTPDI+ +F+ F ++FFQ+RLG+V ++WSK+M S A
Sbjct:   108 MNLVDPEWELVDPTPDIYAMFIRFDEKFFQERLGAVSLEWSKKMYSCA 155

GO:0003677 "DNA binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

UNIPROTKB|F1RGT1 SPRTN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 31/59 (52%), Positives = 41/59 (69%)

Query:     1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
             +SL D+ WE++DPTPD+  LFV F  RFF  +L +VEVKWS RMT  A +   + G+GG
Sbjct:    29 LSLVDASWELVDPTPDLQALFVQFNDRFFWGKLEAVEVKWSVRMTLCAGICSYE-GNGG 86

GO:0070530 "K63-linked polyubiquitin binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0019985 "translesion synthesis" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|1559496 Sprtn "SprT-like N-terminal domain" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 6.4e-10, P = 6.4e-10
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query:     1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
             +SL D+ WE++DPTPD+  LF+ F  RFF  +L +VEVKWS RMT  A +   + G GG
Sbjct:    29 LSLVDASWELVDPTPDLQALFLQFNDRFFWGQLEAVEVKWSVRMTLCAGICTYE-GRGG 86

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005694 "chromosome" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO;ISS

GO:0009411 "response to UV" evidence=IEA;ISO;ISS

GO:0016607 "nuclear speck" evidence=IEA;ISO

GO:0019985 "translesion synthesis" evidence=IEA;ISO;ISS

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA;ISO;ISS

GO:0043130 "ubiquitin binding" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0070530 "K63-linked polyubiquitin binding" evidence=IEA;ISO;ISS

UNIPROTKB|E2R5H3 SPRTN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 31/59 (52%), Positives = 40/59 (67%)

Query:     1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
             +SL D+ WE++DPTPD+  LFV F  RFF  +L +VEVKWS RMT  A +   + G GG
Sbjct:    29 LSLVDASWELVDPTPDLQALFVQFNDRFFWGQLEAVEVKWSLRMTLCAGLCSYE-GRGG 86

GO:0070530 "K63-linked polyubiquitin binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0019985 "translesion synthesis" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:2685351 Sprtn "SprT-like N-terminal domain" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 8.3e-10, P = 8.3e-10
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query:     1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
             +SL D+ WE++DPTPD+  LF+ F  RFF  +L +VEVKWS RMT  A +   + G GG
Sbjct:    30 VSLVDASWELVDPTPDLQALFLQFNDRFFWGQLEAVEVKWSVRMTLCAGICTYE-GRGG 87

GO:0005634 "nucleus" evidence=ISO

GO:0005694 "chromosome" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0009411 "response to UV" evidence=ISO

GO:0019985 "translesion synthesis" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0043130 "ubiquitin binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0070530 "K63-linked polyubiquitin binding" evidence=ISO

UNIPROTKB|Q9H040 SPRTN "SprT-like domain-containing protein Spartan" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 30/59 (50%), Positives = 40/59 (67%)

Query:     1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
             +SL D+ WE++DPTPD+  LFV F  +FF  +L +VEVKWS RMT  A +   + G GG
Sbjct:    29 LSLVDASWELVDPTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTLCAGICSYE-GKGG 86

GO:0003677 "DNA binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009411 "response to UV" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IDA

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0070530 "K63-linked polyubiquitin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0019985 "translesion synthesis" evidence=IMP;IDA

GO:0016607 "nuclear speck" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
G3X912	SPRTN_MOUSE	No assigned EC number	0.5084	0.6373	0.1167	yes	N/A
A5D979	SPRTN_BOVIN	No assigned EC number	0.5423	0.6373	0.1190	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	91
smart00731	146	smart00731, SprT, SprT homologues	0.002

>gnl|CDD|214794 smart00731, SprT, SprT homologues

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 15 PDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAV 49
           ++       + R F  +L   +V W+KR+     
Sbjct: 1  QELTQRLEDASLRVFGRKLPHPKVVWNKRLRKTGG 35

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function. Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
KOG3931|consensus	484		99.97
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	99.14
smart00731	146	SprT SprT homologues. Predicted to have roles in t	98.62
PRK04351	149	hypothetical protein; Provisional	97.24
KOG3854|consensus	505		82.95

>KOG3931|consensus

Probab=99.97  E-value=6.9e-33  Score=228.41  Aligned_cols=66  Identities=45%  Similarity=0.782  Sum_probs=64.8

Q ss_pred             CCCCCCcccccCCCCCHHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEEecCCcceEEEeccC
Q psy4485           1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSN   67 (91)
Q Consensus         1 ~slvD~~wEl~DP~PDIh~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y~~g~gG~C~i~ls~   67 (91)
                      ||||||+|||+||+|||++||.+||++||||+|++|+|+||+||++|||||+|+ |++|+|.|+||+
T Consensus        29 ~sLVDpswELvDPtPDi~AlFiqFd~~FF~g~L~avevkWS~rMy~CAGICsye-g~gg~csIRLSe   94 (484)
T KOG3931|consen   29 LSLVDPSWELVDPTPDIQALFIQFDDQFFWGQLEAVEVKWSVRMYLCAGICSYE-GKGGMCSIRLSE   94 (484)
T ss_pred             ccccCCcceecCCCccHHHHHhhhhHHhhhccceeEEEecchhhheecceeeec-cccceEEEEecc
Confidence            689999999999999999999999999999999999999999999999999999 999999999986

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=99.14  E-value=8.8e-11  Score=80.59  Aligned_cols=48  Identities=25%  Similarity=0.343  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEEecCCcceEEEecc
Q psy4485          17 IHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKS   66 (91)
Q Consensus        17 Ih~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y~~g~gG~C~i~ls   66 (91)
                      +++||.+||+.||+|+|+.+.|+||+||+.+||.|.++  +.+.+.|.++
T Consensus         1 ~~~~f~~~n~~~F~~~L~~~~i~~~~~~~~~~G~~~~~--~~~~~~I~ls   48 (157)
T PF10263_consen    1 LEELFDRFNEEYFGGKLPPIPITWSKRMKRTAGRCRYK--RRSPCEIRLS   48 (157)
T ss_pred             CHHHHHHHHHHHhCCCCCCeEEEEECCCCCceEEEEEC--CCCceEEEEC
Confidence            46899999999999999999999999999999999998  4336778776

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>smart00731 SprT SprT homologues

Probab=98.62  E-value=1.8e-08  Score=70.48  Aligned_cols=47  Identities=15%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             CCHHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEEecCCcceEEEecc
Q psy4485          15 PDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKS   66 (91)
Q Consensus        15 PDIh~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y~~g~gG~C~i~ls   66 (91)
                      +|+.++|.++|..||.++|+.+.|.||+||+..||.|.+.     .+.|+++
T Consensus         1 ~~L~~~~~~~n~~~F~~~l~~~~i~w~~r~~~~~G~~~~~-----~~~I~ln   47 (146)
T smart00731        1 QELTQRLEDASLRVFGRKLPHPKVVWNKRLRKTGGRCLLK-----SAEIRLN   47 (146)
T ss_pred             ChHHHHHHHHHHHHHCCCCCCCEEEEehhhhhhhHHhhcC-----CCEEEeC
Confidence            4789999999999999999999999999999999999763     3666665

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>PRK04351 hypothetical protein; Provisional

Probab=97.24  E-value=0.00026  Score=51.33  Aligned_cols=58  Identities=10%  Similarity=0.206  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEEecCCcceEEEeccCCCCCceeec--chhhhce
Q psy4485          16 DIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRS--SDFYRNI   83 (91)
Q Consensus        16 DIh~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y~~g~gG~C~i~ls~l~~p~~~~~--~~~~~~~   83 (91)
                      .+..|+++++..+|...++. +|.|++||+..||.+..+  .   ..|.++    |..+.+  .+|.+++
T Consensus         5 ~l~~l~~~~s~~~F~~~f~~-~v~~n~RlrttgG~~~l~--~---~~I~ln----p~ll~~~~~~~l~~v   64 (149)
T PRK04351          5 ELQRLVEEISLEYFGKPFRH-QAYFNKRLRTTGGRYLLK--D---HHIEFN----PKMLEEYGLEELIGI   64 (149)
T ss_pred             HHHHHHHHHHHHHhCCCCCc-EEEEeccchhhhheeecC--C---CeEEeC----HHHHhhccHHHHHhh
Confidence            47899999999999999995 999999999999999776  2   345553    666665  5555543

>KOG3854|consensus

Probab=82.95  E-value=0.38  Score=41.72  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEE
Q psy4485          17 IHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVV   53 (91)
Q Consensus        17 Ih~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y   53 (91)
                      ...||..||...|..+|. |.+.|+++|--.||.|.-
T Consensus       292 aq~L~~~fn~aV~~~~L~-vpi~W~~~mrktag~cl~  327 (505)
T KOG3854|consen  292 AQVLYKMFNHAVFSKKLQ-VPIGWNNLMRKTAGCCLN  327 (505)
T ss_pred             HHHHHHHHHhhhcccCCC-chHHHHHHhhhccccccc
Confidence            357999999999999996 445999999999999965

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00