Psyllid ID: psy4618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MSIMESDGEANASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGRGSNANE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHccccccccccHHHHHccccccEEEEEcccccccEEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHccccccccccccHHHHHccccccccHHHHHHHHHHcccccEEEEEccccEEEEEcHHHEEccEEEccccccEEccccccccccccc
Coil and Loop (DISEMBL)
msimesdgeanaspdsmqanrssgsmhtlspysddssqksdsitpsdqplkiardkemgkdyllcdynrdgdsyRHRAAKAIDTYfksgrgsnane
Flexible Loop (DISEMBL)
msimesdgeanaspdsmqANRSSGSMHTLSPysddssqksdsitpsdqplkiardkemgkDYLLCDYNRDGDSYRHRAAKAIdtyfksgrgsnane
Low Complexity Region (SEG)
MSIMESDGEANASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGRGSNANE
Disordered region (IsUnstruct)
***********************************************************KDYLLCDYNRDGDSYRHRAAKAIDTY***********
Disordered Region (DISOPRED)
**********NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYF**********
Disordered Region (DISEMBL)
*********************************************SDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKS********
Disordered Region (DISPRO)
***********ASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFK*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSIMESDGEANASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGRGSNANE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q5XI32	272	F-actin-capping protein s	yes	N/A	0.364	0.128	0.8	2e-10
Q5R507	272	F-actin-capping protein s	yes	N/A	0.364	0.128	0.8	2e-10
P48603	276	F-actin-capping protein s	yes	N/A	0.364	0.126	0.8	2e-10
P14315	277	F-actin-capping protein s	no	N/A	0.364	0.126	0.8	2e-10
P47756	277	F-actin-capping protein s	no	N/A	0.364	0.126	0.8	2e-10
P79136	301	F-actin-capping protein s	yes	N/A	0.364	0.116	0.8	2e-10
P47757	277	F-actin-capping protein s	no	N/A	0.364	0.126	0.8	2e-10
A0PFK7	277	F-actin-capping protein s	no	N/A	0.364	0.126	0.8	2e-10
P34686	270	F-actin-capping protein s	yes	N/A	0.520	0.185	0.56	4e-09
Q7SCP4	289	F-actin-capping protein s	N/A	N/A	0.364	0.121	0.657	6e-08

>sp|Q5XI32|CAPZB_RAT F-actin-capping protein subunit beta OS=Rattus norvegicus GN=Capzb PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. Plays a role in the regulation of cell morphology and cytoskeletal organization.
Rattus norvegicus (taxid: 10116)

>sp|Q5R507|CAPZB_PONAB F-actin-capping protein subunit beta OS=Pongo abelii GN=CAPZB PE=2 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. Plays a role in the regulation of cell morphology and cytoskeletal organization.

Pongo abelii (taxid: 9601)

>sp|P48603|CAPZB_DROME F-actin-capping protein subunit beta OS=Drosophila melanogaster GN=cpb PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIA+DKE GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLSSVDQPLKIAKDKEHGKDYLLCDYNRDGDSYR 72

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.

Drosophila melanogaster (taxid: 7227)

>sp|P14315|CAPZB_CHICK F-actin-capping protein subunit beta isoforms 1 and 2 OS=Gallus gallus GN=CAPZB PE=1 SV=3

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. May play a role in the regulation of cell morphology and cytoskeletal organization.

Gallus gallus (taxid: 9031)

>sp|P47756|CAPZB_HUMAN F-actin-capping protein subunit beta OS=Homo sapiens GN=CAPZB PE=1 SV=4

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. Plays a role in the regulation of cell morphology and cytoskeletal organization.

Homo sapiens (taxid: 9606)

>sp|P79136|CAPZB_BOVIN F-actin-capping protein subunit beta OS=Bos taurus GN=CAPZB PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)

Query: 41  DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
           D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 67  DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 101

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. The isoform beta-3 may play a role in spermatogenesis. Alternatively, may play a role in later maturation steps such as capacitation and fertilization which involve changes of membrane domains. May play a role in the regulation of cell morphology and cytoskeletal organization.

Bos taurus (taxid: 9913)

>sp|P47757|CAPZB_MOUSE F-actin-capping protein subunit beta OS=Mus musculus GN=Capzb PE=1 SV=3

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. Plays a role in the regulation of cell morphology and cytoskeletal organization.

Mus musculus (taxid: 10090)

>sp|A0PFK7|CAPZB_PIG F-actin-capping protein subunit beta OS=Sus scrofa GN=CAPZB PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. Plays a role in the regulation of cell morphology and cytoskeletal organization.

Sus scrofa (taxid: 9823)

>sp|P34686|CAPZB_CAEEL F-actin-capping protein subunit beta OS=Caenorhabditis elegans GN=cap-2 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 34/50 (68%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGR 90
          D ++  DQPLKIA D+E GK YLLCDYNRDGDSYR   +   D   + G+
Sbjct: 38 DLLSTIDQPLKIAADRETGKQYLLCDYNRDGDSYRSPWSNTYDPPLEDGQ 87

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.

Caenorhabditis elegans (taxid: 6239)

>sp|Q7SCP4|CAPZB_NEUCR F-actin-capping protein subunit beta OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cap-2 PE=3 SV=3

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 28/35 (80%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPL + R K+ G+DYLLCDYNRDGDSYR
Sbjct: 39 DLLSSVDQPLTVKRCKQTGRDYLLCDYNRDGDSYR 73

F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
260784666	238	hypothetical protein BRAFLDRAFT_96273 [B	0.479	0.193	0.630	1e-09
242007000	271	F-actin capping protein subunit beta, pu	0.364	0.129	0.828	1e-09
31225884	275	AGAP007864-PA [Anopheles gambiae str. PE	0.364	0.127	0.828	2e-09
312381140	328	hypothetical protein AND_06630 [Anophele	0.364	0.106	0.828	2e-09
157127336	275	f-actin capping protein beta subunit [Ae	0.364	0.127	0.828	2e-09
170049079	275	F-actin capping protein subunit beta [Cu	0.364	0.127	0.828	2e-09
301625628	252	PREDICTED: LOW QUALITY PROTEIN: f-actin-	0.479	0.182	0.630	3e-09
194376418	335	unnamed protein product [Homo sapiens]	0.687	0.197	0.480	3e-09
221110986	274	PREDICTED: F-actin-capping protein subun	0.364	0.127	0.828	3e-09
396578078	276	CapZ-beta [Branchiostoma belcheri]	0.364	0.126	0.8	3e-09

>gi|260784666|ref|XP_002587386.1| hypothetical protein BRAFLDRAFT_96273 [Branchiostoma floridae] gi|229272531|gb|EEN43397.1| hypothetical protein BRAFLDRAFT_96273 [Branchiostoma floridae]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 34/46 (73%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYF 86
          D ++  DQPLKIARDK++GKDYLLCDYNRDGDSYR+        Y 
Sbjct: 40 DLLSSVDQPLKIARDKQVGKDYLLCDYNRDGDSYRYFEGGVSSVYL 85

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242007000|ref|XP_002424330.1| F-actin capping protein subunit beta, putative [Pediculus humanus corporis] gi|212507730|gb|EEB11592.1| F-actin capping protein subunit beta, putative [Pediculus humanus corporis]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 32/35 (91%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDKE+GKDYLLCDYNRDGDSYR
Sbjct: 33 DLLSSVDQPLKIARDKEVGKDYLLCDYNRDGDSYR 67

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|31225884|ref|XP_317628.1| AGAP007864-PA [Anopheles gambiae str. PEST] gi|30175497|gb|EAA12157.2| AGAP007864-PA [Anopheles gambiae str. PEST]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 31/35 (88%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D +T  DQPLKIA+DKE GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLTSVDQPLKIAKDKETGKDYLLCDYNRDGDSYR 72

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381140|gb|EFR26956.1| hypothetical protein AND_06630 [Anopheles darlingi]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 31/35 (88%)

Query: 41  DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
           D +T  DQPLKIA+DKE GKDYLLCDYNRDGDSYR
Sbjct: 91  DLLTSVDQPLKIAKDKETGKDYLLCDYNRDGDSYR 125

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127336|ref|XP_001654929.1| f-actin capping protein beta subunit [Aedes aegypti] gi|108882364|gb|EAT46589.1| AAEL002184-PA [Aedes aegypti]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 31/35 (88%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D +T  DQPLKIA+DKE GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLTSVDQPLKIAKDKETGKDYLLCDYNRDGDSYR 72

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170049079|ref|XP_001870869.1| F-actin capping protein subunit beta [Culex quinquefasciatus] gi|167871004|gb|EDS34387.1| F-actin capping protein subunit beta [Culex quinquefasciatus]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 31/35 (88%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D +T  DQPLKIA+DKE GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLTSIDQPLKIAKDKETGKDYLLCDYNRDGDSYR 72

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301625628|ref|XP_002942006.1| PREDICTED: LOW QUALITY PROTEIN: f-actin-capping protein subunit beta-like [Xenopus (Silurana) tropicalis]

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 33/46 (71%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYF 86
          D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR+        Y 
Sbjct: 54 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRYFEGGVSSVYL 99

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194376418|dbj|BAG62968.1| unnamed protein product [Homo sapiens]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 11/77 (14%)

Query: 5   ESDGEANASPDSM------QANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEM 58
           +SD + + + D M      Q  ++ G +  L P     S   D ++  DQPLKIARDK +
Sbjct: 64  QSDQQLDCALDLMRRLPPQQIEKNLGDLIDLVP-----SLCEDLLSSVDQPLKIARDKVV 118

Query: 59  GKDYLLCDYNRDGDSYR 75
           GKDYLLCDYNRDGDSYR
Sbjct: 119 GKDYLLCDYNRDGDSYR 135

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|221110986|ref|XP_002164225.1| PREDICTED: F-actin-capping protein subunit beta-like [Hydra magnipapillata]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 31/35 (88%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDKE GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLSSIDQPLKIARDKETGKDYLLCDYNRDGDSYR 72

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|396578078|dbj|BAM34021.1| CapZ-beta [Branchiostoma belcheri]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 32/35 (91%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDK++GKDYLLCDYNRDGDSYR
Sbjct: 40 DLLSSVDQPLKIARDKQVGKDYLLCDYNRDGDSYR 74

Source: Branchiostoma belcheri

Species: Branchiostoma belcheri

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
UNIPROTKB|F6Q0E3	121	CAPZB "F-actin-capping protein	0.510	0.404	0.612	2.8e-11
UNIPROTKB|F6USW4	206	CAPZB "F-actin-capping protein	0.510	0.237	0.612	2.8e-11
UNIPROTKB|B1AK85	260	CAPZB "F-actin-capping protein	0.885	0.326	0.441	3.1e-11
UNIPROTKB|B1AK87	260	CAPZB "F-actin-capping protein	0.510	0.188	0.612	4.1e-11
UNIPROTKB|P79136	301	CAPZB "F-actin-capping protein	0.885	0.282	0.441	4.5e-11
UNIPROTKB|B1AK88	301	CAPZB "Capping protein (Actin	0.885	0.282	0.441	4.5e-11
UNIPROTKB|A9XFX6	272	Capzb "F-actin capping protein	0.510	0.180	0.612	5.1e-11
UNIPROTKB|Q5R507	272	CAPZB "F-actin-capping protein	0.510	0.180	0.612	5.1e-11
RGD|1359099	272	Capzb "capping protein (actin	0.510	0.180	0.612	5.1e-11
UNIPROTKB|F2Z4M9	276	CAPZB "F-actin-capping protein	0.510	0.177	0.612	5.4e-11

UNIPROTKB|F6Q0E3 CAPZB "F-actin-capping protein subunit beta" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query:    41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSG 89
             D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR   +   D   + G
Sbjct:    10 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDG 58

GO:0003779 "actin binding" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0071203 "WASH complex" evidence=IEA

UNIPROTKB|F6USW4 CAPZB "F-actin-capping protein subunit beta" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query:    41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSG 89
             D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR   +   D   + G
Sbjct:    26 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDG 74

GO:0003779 "actin binding" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0071203 "WASH complex" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

UNIPROTKB|B1AK85 CAPZB "F-actin-capping protein subunit beta" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 38/86 (44%), Positives = 48/86 (55%)

Query:     5 ESDGEANASPDSMQANRSSGSMHTLSPYSD-DSSQKSDSITPSDQPLKIARDKEMGKDYL 63
             +SD + + + D M+          LS   D   S   D ++  DQPLKIARDK +GKDYL
Sbjct:    27 KSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 86

Query:    64 LCDYNRDGDSYRHRAAKAIDTYFKSG 89
             LCDYNRDGDSYR   +   D   + G
Sbjct:    87 LCDYNRDGDSYRSPWSNKYDPPLEDG 112

GO:0003779 "actin binding" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0071203 "WASH complex" evidence=IEA

UNIPROTKB|B1AK87 CAPZB "F-actin-capping protein subunit beta" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query:    41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSG 89
             D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR   +   D   + G
Sbjct:    26 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDG 74

GO:0003779 "actin binding" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0071203 "WASH complex" evidence=IEA

UNIPROTKB|P79136 CAPZB "F-actin-capping protein subunit beta" [Bos taurus (taxid:9913)]

 Score = 157 (60.3 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 38/86 (44%), Positives = 48/86 (55%)

Query:     5 ESDGEANASPDSMQANRSSGSMHTLSPYSD-DSSQKSDSITPSDQPLKIARDKEMGKDYL 63
             +SD + + + D M+          LS   D   S   D ++  DQPLKIARDK +GKDYL
Sbjct:    30 QSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 89

Query:    64 LCDYNRDGDSYRHRAAKAIDTYFKSG 89
             LCDYNRDGDSYR   +   D   + G
Sbjct:    90 LCDYNRDGDSYRSPWSNKYDPPLEDG 115

GO:0005515 "protein binding" evidence=IPI

GO:0022604 "regulation of cell morphogenesis" evidence=ISS

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0071203 "WASH complex" evidence=ISS

GO:0033150 "cytoskeletal calyx" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0051693 "actin filament capping" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

UNIPROTKB|B1AK88 CAPZB "Capping protein (Actin filament) muscle Z-line, beta, isoform CRA_d" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 38/86 (44%), Positives = 48/86 (55%)

Query:     5 ESDGEANASPDSMQANRSSGSMHTLSPYSD-DSSQKSDSITPSDQPLKIARDKEMGKDYL 63
             +SD + + + D M+          LS   D   S   D ++  DQPLKIARDK +GKDYL
Sbjct:    30 QSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYL 89

Query:    64 LCDYNRDGDSYRHRAAKAIDTYFKSG 89
             LCDYNRDGDSYR   +   D   + G
Sbjct:    90 LCDYNRDGDSYRSPWSNKYDPPLEDG 115

GO:0003779 "actin binding" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0071203 "WASH complex" evidence=IEA

UNIPROTKB|A9XFX6 Capzb "F-actin capping protein beta subunit" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query:    41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSG 89
             D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR   +   D   + G
Sbjct:    38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDG 86

GO:0071203 "WASH complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|Q5R507 CAPZB "F-actin-capping protein subunit beta" [Pongo abelii (taxid:9601)]

 Score = 155 (59.6 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query:    41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSG 89
             D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR   +   D   + G
Sbjct:    38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDG 86

GO:0007010 "cytoskeleton organization" evidence=ISS

GO:0022604 "regulation of cell morphogenesis" evidence=ISS

GO:0071203 "WASH complex" evidence=ISS

RGD|1359099 Capzb "capping protein (actin filament) muscle Z-line, beta" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query:    41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSG 89
             D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR   +   D   + G
Sbjct:    38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDG 86

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007010 "cytoskeleton organization" evidence=ISO;ISS

GO:0008290 "F-actin capping protein complex" evidence=IEA;ISO

GO:0014704 "intercalated disc" evidence=ISO

GO:0016020 "membrane" evidence=IEA;ISO

GO:0022604 "regulation of cell morphogenesis" evidence=ISO;ISS

GO:0030018 "Z disc" evidence=ISO

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0030030 "cell projection organization" evidence=ISO

GO:0030032 "lamellipodium assembly" evidence=IEA;ISO

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA;ISO

GO:0031115 "negative regulation of microtubule polymerization" evidence=ISO

GO:0031175 "neuron projection development" evidence=ISO

GO:0048487 "beta-tubulin binding" evidence=ISO

GO:0048747 "muscle fiber development" evidence=ISO

GO:0051016 "barbed-end actin filament capping" evidence=ISO

GO:0051693 "actin filament capping" evidence=IEA

GO:0071203 "WASH complex" evidence=IEA;ISO;ISS

GO:0001669 "acrosomal vesicle" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

UNIPROTKB|F2Z4M9 CAPZB "F-actin-capping protein subunit beta isoforms 1 and 2" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 5.4e-11, P = 5.4e-11
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query:    41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSG 89
             D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR   +   D   + G
Sbjct:    37 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDG 85

GO:0003779 "actin binding" evidence=IEA

GO:0008290 "F-actin capping protein complex" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022604 "regulation of cell morphogenesis" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0071203 "WASH complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34686	CAPZB_CAEEL	No assigned EC number	0.56	0.5208	0.1851	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	96
pfam01115	240	pfam01115, F_actin_cap_B, F-actin capping protein,	3e-14

>gnl|CDD|144634 pfam01115, F_actin_cap_B, F-actin capping protein, beta subunit

 Score = 64.9 bits (159), Expect = 3e-14
 Identities = 24/29 (82%), Positives = 25/29 (86%)

Query: 47 DQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          DQPLKI +D E GKDYL CDYNRDGDSYR
Sbjct: 40 DQPLKIKKDSETGKDYLCCDYNRDGDSYR 68

Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
PF01115	242	F_actin_cap_B: F-actin capping protein, beta subun	100.0
KOG3174|consensus	275		99.97

>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex

Probab=100.00  E-value=1.4e-37  Score=242.49  Aligned_cols=74  Identities=45%  Similarity=0.716  Sum_probs=58.7

Q ss_pred             CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCC---
Q psy4618          11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFK---   87 (96)
Q Consensus        11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~---   87 (96)
                      .+.|+.++.||+  +||.|.     |+|++||||+|||||||++|+++||+||+||||||||||||||||+||||++   
T Consensus        11 RlpP~~ie~nl~--~l~~L~-----Pdl~edLLssVD~PLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~~~~~~   83 (242)
T PF01115_consen   11 RLPPKKIEKNLS--NLIDLV-----PDLTEDLLSSVDQPLKVARDKETGKDYLLCDYNRDGDSYRSPWSNKYYPPLEGDD   83 (242)
T ss_dssp             TS-GGGHHHHHH--HHHHHS-----GGGHHHHHHHS----EEEEETTTTEEEEESGGGEETTEEE-TTT--EES--S---
T ss_pred             hCChHHHHHHHH--HHHHHH-----HHHHHHHHHhCCCcceEEEchhhCCeeEeecccCCcccccCCCCcccCCCccccc
Confidence            578999999999  888887     7999999999999999999999999999999999999999999999999999   


Q ss_pred             --CCCC
Q psy4618          88 --SGRG   91 (96)
Q Consensus        88 --dG~~   91 (96)
                        +|..
T Consensus        84 ~~dg~~   89 (242)
T PF01115_consen   84 LEDGPV   89 (242)
T ss_dssp             --S---
T ss_pred             cCCCCC
Confidence              7764

The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....

>KOG3174|consensus

Probab=99.97  E-value=1.7e-33  Score=223.38  Aligned_cols=76  Identities=43%  Similarity=0.673  Sum_probs=70.7

Q ss_pred             CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCCCCC
Q psy4618          11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGR   90 (96)
Q Consensus        11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~   90 (96)
                      .++|..|+.||+  +++.     |+|+|++|||++|||||||++|+|+||+||+||||||||||||||||+|+||++||+
T Consensus        15 rLpPqqieKnL~--nLId-----L~P~L~edLLsSVdqplKia~dke~g~~yllcDynrdgDsyRsPwsnsy~pPledg~   87 (275)
T KOG3174|consen   15 RLPPQQIEKNLS--NLID-----LAPHLCEDLLSSVDQPLKIARDKESGKQYLLCDYNRDGDSYRSPWSNSYDPPLEDGV   87 (275)
T ss_pred             cCCHHHHHHHHH--HHHH-----hchHHHHHHHhhcccceeehhhhhcCCeeeeeecCCCcccccCCCCcccCCccccCC
Confidence            589999999999  6555     458999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q psy4618          91 GSN   93 (96)
Q Consensus        91 ~~~   93 (96)
                      ...
T Consensus        88 ~Ps   90 (275)
T KOG3174|consen   88 YPS   90 (275)
T ss_pred             CcH
Confidence            753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	96
2kxp_B	270	Solution Nmr Structure Of V-1 Bound To Capping Prot		2e-11
3lk2_B	243	Crystal Structure Of Capz Bound To The Uncapping Mo		2e-11
3aa0_B	244	Crystal Structure Of Actin Capping Protein In Compl		2e-11
1izn_B	277	Crystal Structure Of Actin Filament Capping Protein		2e-11
4akr_B	290	Crystal Structure Of The Cytoplasmic Actin Capping		1e-07

>pdb|2KXP|B Chain B, Solution Nmr Structure Of V-1 Bound To Capping Protein (Cp) Length = 270

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 37 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 71

>pdb|3LK2|B Chain B, Crystal Structure Of Capz Bound To The Uncapping Motif From Carmil Length = 243

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72

>pdb|3AA0|B Chain B, Crystal Structure Of Actin Capping Protein In Complex With The Cp- Binding Motif Derived From Carmil Length = 244

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72

>pdb|1IZN|B Chain B, Crystal Structure Of Actin Filament Capping Protein Capz Length = 277

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 38 DLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72

>pdb|4AKR|B Chain B, Crystal Structure Of The Cytoplasmic Actin Capping Protein Cap32_34 From Dictyostelium Discoideum Length = 290

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 26/35 (74%)
Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLK+A D    KDYLLCDYNRD DSYR
Sbjct: 56 DLLSSIDQPLKVAYDAVSKKDYLLCDYNRDADSYR 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	96
4akr_B	290	F-actin-capping protein subunit beta; actin-bindin	6e-12
3aa0_B	244	F-actin-capping protein subunit beta isoforms 1 A;	1e-11
3lk4_B	277	F-actin-capping protein subunit beta isoforms 1 an	3e-11

>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum} Length = 290

 Score = 58.5 bits (141), Expect = 6e-12
 Identities = 23/35 (65%), Positives = 26/35 (74%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLK+A D    KDYLLCDYNRD DSYR
Sbjct: 56 DLLSSIDQPLKVAYDAVSKKDYLLCDYNRDADSYR 90

>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B Length = 244

 Score = 57.2 bits (138), Expect = 1e-11
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 40 SDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
           D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 37 EDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72

>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B Length = 277

 Score = 56.5 bits (136), Expect = 3e-11
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 40 SDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
           D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 37 EDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
3lk4_B	277	F-actin-capping protein subunit beta isoforms 1 an	100.0
4akr_B	290	F-actin-capping protein subunit beta; actin-bindin	100.0
3aa0_B	244	F-actin-capping protein subunit beta isoforms 1 A;	100.0
3aa0_A	286	F-actin-capping protein subunit alpha-1; actin cap	99.17

>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B

Probab=100.00  E-value=1.1e-38  Score=251.75  Aligned_cols=75  Identities=47%  Similarity=0.726  Sum_probs=71.3

Q ss_pred             CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCCCCC
Q psy4618          11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGR   90 (96)
Q Consensus        11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~   90 (96)
                      .+.|+.|+.||+  +||.|.     |+|++||||+|||||||++|+++||+||+||||||||||||||||+|+||++||.
T Consensus        15 RLpP~~ie~nl~--~l~~L~-----P~L~edLLssVDqPLki~~d~~~~k~yL~CDYNRDgDSYRSPwSNkY~Ppl~dg~   87 (277)
T 3lk4_B           15 RLPPQQIEKNLS--DLIDLV-----PSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGA   87 (277)
T ss_dssp             TSCGGGHHHHHH--HHHHHC-----GGGHHHHHHHSCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCSSCC
T ss_pred             hCCHHHHHHHHH--HHHhhC-----hHhHHHHHHhCCcCceEeEccccCCeeEeecccCCCccccCCCcCCcCCCCcCCC
Confidence            478999999999  888877     7999999999999999999999999999999999999999999999999999997


Q ss_pred             CC
Q psy4618          91 GS   92 (96)
Q Consensus        91 ~~   92 (96)
                      .-
T Consensus        88 ~P   89 (277)
T 3lk4_B           88 MP   89 (277)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}

Probab=100.00  E-value=2.8e-38  Score=250.84  Aligned_cols=75  Identities=36%  Similarity=0.558  Sum_probs=71.1

Q ss_pred             CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCCCCC
Q psy4618          11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGR   90 (96)
Q Consensus        11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~   90 (96)
                      .+.|+.|+.||+  +||.|.     |+|++||||+|||||||++|+++||+||+||||||||||||||||+|+||++||.
T Consensus        33 RLpP~~ie~nL~--~Li~L~-----Pdl~edLLssVDqPLki~~d~~~~k~yL~CDYNRDGDSYRSPwSNkY~Ppl~dg~  105 (290)
T 4akr_B           33 RLPPSQIEDNLA--GLLDLV-----PDLTEDLLSSIDQPLKVAYDAVSKKDYLLCDYNRDADSYRSPWSNKYDPPLSGAC  105 (290)
T ss_dssp             HSCGGGHHHHHH--HHHHHC-----GGGHHHHHHHCCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCSSCC
T ss_pred             hCCHHHHHHHHH--HHHhhC-----hHhHHHHHHhCCCcceEeEccccCCeEEeecccCCCccccCCCCCCcCCCCCCCC
Confidence            378999999999  888877     7999999999999999999999999999999999999999999999999999997


Q ss_pred             CC
Q psy4618          91 GS   92 (96)
Q Consensus        91 ~~   92 (96)
                      .-
T Consensus       106 ~P  107 (290)
T 4akr_B          106 YP  107 (290)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B

Probab=100.00  E-value=8.1e-38  Score=243.21  Aligned_cols=74  Identities=47%  Similarity=0.734  Sum_probs=70.7

Q ss_pred             CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCCCCC
Q psy4618          11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGR   90 (96)
Q Consensus        11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~   90 (96)
                      .+.|+.++.||+  +||.|.     |+|++|||++|||||||++|+++||+||+||||||||||||||||+||||++||.
T Consensus        15 RLpP~~ie~nl~--~l~~L~-----Pdl~edLLssVDqPLki~~d~~~~k~yL~CdYNRDgDSYRSPwSN~Y~P~~~dg~   87 (244)
T 3aa0_B           15 RLPPQQIEKNLS--DLIDLV-----PSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGA   87 (244)
T ss_dssp             TSCGGGHHHHHH--HHHHHC-----GGGHHHHHHHSCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCSSCC
T ss_pred             cCCHHHHHHHHH--HHHHhC-----hHHHHHHHhccCCcceEeeccccCCeeeeecccCCCccccCCCCCCcCCCCCCCC
Confidence            578999999999  888877     7999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q psy4618          91 G   91 (96)
Q Consensus        91 ~   91 (96)
                      .
T Consensus        88 ~   88 (244)
T 3aa0_B           88 M   88 (244)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A

Probab=99.17  E-value=7.7e-13  Score=102.22  Aligned_cols=66  Identities=18%  Similarity=0.246  Sum_probs=57.4

Q ss_pred             CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCC-----Cc--ceeEeeccccCceeeecccCCCC-CccCCCCCCCc
Q psy4618          11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPS-----DQ--PLKIARDKEMGKDYLLCDYNRDG-DSYRHRAAKAI   82 (96)
Q Consensus        11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssV-----Dq--PLkI~~D~e~~K~yL~CDYNRDG-DSYRSPwSN~Y   82 (96)
                      ++.|..++.+++  .|+.|++  ..+.+.++|++++     ||  ||+|   +.++++||+|+||||| ++|+.||++++
T Consensus        23 ~aPPge~~~v~~--Dl~~L~~--dd~ll~~~l~~a~~~yn~dq~~pl~v---~~~~~~~li~~yn~~~~~~Y~dp~s~~~   95 (286)
T 3aa0_A           23 HAPPGEFNEVFN--DVRLLLN--NDNLLREGAAHAFAQYNMDQFTPVKI---EGYDDQVLITEHGDLGNGRFLDPRNKIS   95 (286)
T ss_dssp             TCCTTCHHHHHH--HHHHHHC--CHHHHHHHTHHHHHHHHHHTTCEECC---TTSSSCEECCGGGEEETTEEEETTTTEE
T ss_pred             hCCcHHHHHHHH--HHHHHcC--CcHHHHHHHHHHHHHHHHhcceeEEe---cCCCCcEEEEeccccCCCceeCcccCce
Confidence            678999999999  9999984  1222888899999     99  9999   6788999999999998 89999999987


Q ss_pred             c
Q psy4618          83 D   83 (96)
Q Consensus        83 ~   83 (96)
                      +
T Consensus        96 f   96 (286)
T 3aa0_A           96 F   96 (286)
T ss_dssp             E
T ss_pred             E
Confidence            7

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	96
d1iznb_	270	e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus	1e-13

>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]} Length = 270

class: Multi-domain proteins (alpha and beta)
fold: Subunits of heterodimeric actin filament capping protein Capz
superfamily: Subunits of heterodimeric actin filament capping protein Capz
family: Capz beta-1 subunit
domain: Capz beta-1 subunit
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.1 bits (151), Expect = 1e-13
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 40 SDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
           D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 36 EDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d1iznb_	270	Capz beta-1 subunit {Chicken (Gallus gallus) [TaxI	100.0

>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}

class: Multi-domain proteins (alpha and beta)
fold: Subunits of heterodimeric actin filament capping protein Capz
superfamily: Subunits of heterodimeric actin filament capping protein Capz
family: Capz beta-1 subunit
domain: Capz beta-1 subunit
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.5e-37  Score=242.76  Aligned_cols=75  Identities=47%  Similarity=0.726  Sum_probs=71.5

Q ss_pred             CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCCCCC
Q psy4618          11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGR   90 (96)
Q Consensus        11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~   90 (96)
                      .+.|+.++.||+  +||+|.     |+|++|||++|||||||++|+++||+||+||||||||||||||||+||||++||.
T Consensus        14 RlpP~~ie~~l~--~l~~L~-----pdl~edLLssVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSPwSNkY~P~~edg~   86 (270)
T d1iznb_          14 RLPPQQIEKNLS--DLIDLV-----PSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGA   86 (270)
T ss_dssp             TSCGGGHHHHHH--HHHHHC-----GGGHHHHHHHSCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCSSCC
T ss_pred             cCChHHHHHHHH--HHHhhC-----HHHHHHHHHhCCCcceEeEchhhCCeeEeecccCCCccccCCCCCCcCCCccCCC
Confidence            578999999999  888887     7999999999999999999999999999999999999999999999999999997


Q ss_pred             CC
Q psy4618          91 GS   92 (96)
Q Consensus        91 ~~   92 (96)
                      .-
T Consensus        87 ~P   88 (270)
T d1iznb_          87 MP   88 (270)
T ss_dssp             CC
T ss_pred             CC
Confidence            63