Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 90
COG0277 459
COG0277, GlcD, FAD/FMN-containing dehydrogenases [
7e-09 pfam01565 139
pfam01565, FAD_binding_4, FAD binding domain
9e-08 TIGR00387 413
TIGR00387, glcD, glycolate oxidase, subunit GlcD
4e-04 PLN02805 555
PLN02805, PLN02805, D-lactate dehydrogenase [cytoc
0.003
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]
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Score = 50.7 bits (121), Expect = 7e-09
Identities = 15/51 (29%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87
+S E+V ++++A+++ + ++P GGGT+++G A P+ + LD S++
Sbjct: 39 KSEEEVAAILRLANENGIPVVPRGGGTSLSGG-AVPDGG----VVLDLSRL 84
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain
Back Show alignment and domain information
Score = 46.0 bits (110), Expect = 9e-08
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENE-------LRTIISLDTSQMQ 88
ES E+V +V++A+++ L ++ GGG+++ G A L I+ +D
Sbjct: 8 ESEEEVAAIVRLANENGLPVLVRGGGSSLLGD-AVLTGGVVLDLSRLNGILEIDPEDGT 65
This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD
Back Show alignment and domain information
Score = 37.1 bits (86), Expect = 4e-04
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 37 ESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPE 73
++TE V +++++ H+H + I+P G GT ++G A PE
Sbjct: 5 KNTEQVARILKLCHEHRIPIVPRGAGTGLSGG-ALPE 40
This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. Length = 413
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome]
Back Show alignment and domain information
Score = 34.6 bits (79), Expect = 0.003
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 38 STEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89
S E+V K+V+ + + + I+P+GG T++ G P + +D S M+S
Sbjct: 142 SEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPHGG----VCIDMSLMKS 189
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
90
PRK11183 564
D-lactate dehydrogenase; Provisional
99.51 PRK11230 499
glycolate oxidase subunit GlcD; Provisional
99.43 PLN02805 555
D-lactate dehydrogenase [cytochrome]
99.43 PF01565 139
FAD_binding_4: FAD binding domain This is only a s
99.41 COG0277 459
GlcD FAD/FMN-containing dehydrogenases [Energy pro
99.34 PRK12436 305
UDP-N-acetylenolpyruvoylglucosamine reductase; Pro
99.31 PRK14652 302
UDP-N-acetylenolpyruvoylglucosamine reductase; Pro
99.28 PRK13906 307
murB UDP-N-acetylenolpyruvoylglucosamine reductase
99.27 TIGR00179 284
murB UDP-N-acetylenolpyruvoylglucosamine reductase
99.26 PRK13905 298
murB UDP-N-acetylenolpyruvoylglucosamine reductase
99.24 TIGR00387 413
glcD glycolate oxidase, subunit GlcD. This protein
99.22 KOG1233|consensus 613
99.21 PLN02441 525
cytokinin dehydrogenase
99.21 PRK14649 295
UDP-N-acetylenolpyruvoylglucosamine reductase; Pro
99.16 PRK14653 297
UDP-N-acetylenolpyruvoylglucosamine reductase; Pro
99.11 PRK13903 363
murB UDP-N-acetylenolpyruvoylglucosamine reductase
99.09 KOG1231|consensus 505
99.04 TIGR01678 438
FAD_lactone_ox sugar 1,4-lactone oxidases. This mo
99.04 PRK14648 354
UDP-N-acetylenolpyruvoylglucosamine reductase; Pro
99.0 PRK14650 302
UDP-N-acetylenolpyruvoylglucosamine reductase; Pro
98.94 TIGR01677 557
pln_FAD_oxido plant-specific FAD-dependent oxidore
98.93 TIGR01676 541
GLDHase galactonolactone dehydrogenase. This model
98.92 PRK00046 334
murB UDP-N-acetylenolpyruvoylglucosamine reductase
98.92 COG0812 291
MurB UDP-N-acetylmuramate dehydrogenase [Cell enve
98.77 PLN02465 573
L-galactono-1,4-lactone dehydrogenase
98.75 KOG1232|consensus 511
98.7 TIGR01679 419
bact_FAD_ox FAD-linked oxidoreductase. This model
98.66 PRK14651 273
UDP-N-acetylenolpyruvoylglucosamine reductase; Pro
98.35 PRK11282 352
glcE glycolate oxidase FAD binding subunit; Provis
98.24 KOG4730|consensus 518
97.68 PRK13904 257
murB UDP-N-acetylenolpyruvoylglucosamine reductase
97.07 COG4359 220
Uncharacterized conserved protein [Function unknow
88.01 PF00941 171
FAD_binding_5: FAD binding domain in molybdopterin
87.58 PRK09799 258
putative oxidoreductase; Provisional
85.62 cd02742 303
GH20_hexosaminidase Beta-N-acetylhexosaminidases o
84.99 cd06568 329
GH20_SpHex_like A subgroup of the Glycosyl hydrola
84.93 cd06565 301
GH20_GcnA-like Glycosyl hydrolase family 20 (GH20)
84.35 PF00728 351
Glyco_hydro_20: Glycosyl hydrolase family 20, cata
83.89 cd06570 311
GH20_chitobiase-like_1 A functionally uncharacteri
83.12 cd06563 357
GH20_chitobiase-like The chitobiase of Serratia ma
82.84 cd06564 326
GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (
82.3 TIGR03312 257
Se_sel_red_FAD probable selenate reductase, FAD-bi
81.5 cd06562 348
GH20_HexA_HexB-like Beta-N-acetylhexosaminidases c
81.45 KOG4498|consensus 197
81.03
>PRK11183 D-lactate dehydrogenase; Provisional
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Probab=99.51 E-value=6.2e-14 Score=108.76 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=55.2
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCC-CccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPEN-ELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~-~~~~gvvIdl~~m~~ 89 (90)
+...|.+||+|+|++||+++|++|+++++|++|+|+||++.||+.+..+ ..+++|+|||++||+
T Consensus 35 ~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNr 99 (564)
T PRK11183 35 GQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDK 99 (564)
T ss_pred cCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCC
Confidence 3456999999999999999999999999999999999999999974322 123489999999986
>PRK11230 glycolate oxidase subunit GlcD; Provisional
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Probab=99.43 E-value=5.9e-13 Score=102.49 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=54.5
Q ss_pred eeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 25 AIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 25 ~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
.++..|.+|++|+|++||+++|++|+++++|++|+|+|||+.++.. +.. +|++|||++||+
T Consensus 51 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~-~~~---~gividl~~ln~ 111 (499)
T PRK11230 51 AYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGAL-PLE---KGVLLVMARFNR 111 (499)
T ss_pred ccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcc-cCC---CcEEEEcccCCC
Confidence 3566799999999999999999999999999999999999988875 333 489999999986
>PLN02805 D-lactate dehydrogenase [cytochrome]
Back Show alignment and domain information
Probab=99.43 E-value=7.2e-13 Score=103.25 Aligned_cols=57 Identities=28% Similarity=0.482 Sum_probs=52.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 29 GTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 29 ~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
.|.+|++|+|++||+++|++|+++++|++|+|+|||+.|++.+.+ +|++|||++||+
T Consensus 133 ~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~----ggivIdl~~mn~ 189 (555)
T PLN02805 133 IPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH----GGVCIDMSLMKS 189 (555)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC----CEEEEEccCCCC
Confidence 599999999999999999999999999999999999998875433 589999999986
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage
Back Show alignment and domain information
Probab=99.41 E-value=1.1e-12 Score=84.72 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=49.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
|++|++|++++||++++++|+++++++.++|+|||+.+... .. ++++|||++|++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~----~~ivi~~~~l~~ 55 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DE----GGIVIDMSRLNK 55 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-ST----TEEEEECTTCGC
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cC----CcEEEeeccccc
Confidence 78999999999999999999999999999999999984442 22 599999999975
One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Back Show alignment and domain information
Probab=99.34 E-value=3.4e-12 Score=95.46 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=54.3
Q ss_pred eeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 25 AIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 25 ~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
.++..|.+++.|+|++||++++++|+++++|++|+|+||++.++.. ++ + ||+|||++||+
T Consensus 27 ~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~-~~-~---gvvl~l~~mn~ 86 (459)
T COG0277 27 VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAV-PD-G---GVVLDLSRLNR 86 (459)
T ss_pred hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCcccccc-CC-C---cEEEEchhhcc
Confidence 3556799999999999999999999999999999999999999886 54 2 89999999986
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=99.31 E-value=5e-12 Score=92.32 Aligned_cols=64 Identities=20% Similarity=0.410 Sum_probs=54.3
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
..|+.++++ |++++.|+|++||++++++|+++++|++++|+|||+. +.+++++ |++|+|++|++
T Consensus 26 ~~~tt~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll----~~d~g~~-GvvI~l~~l~~ 91 (305)
T PRK12436 26 KNHTHIKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVI----IKDGGIR-GITVSLIHITG 91 (305)
T ss_pred hhccCcccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEE----EeCCCee-EEEEEeCCcCc
Confidence 345666655 9999999999999999999999999999999999996 3565554 89999987764
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=99.28 E-value=1.3e-11 Score=90.07 Aligned_cols=61 Identities=15% Similarity=0.305 Sum_probs=53.5
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQ 86 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~ 86 (90)
.+|++|+++ |++++.|+|++||++++++|+++++|++++|+|||+. .++++++ |++|++++
T Consensus 25 ~~~tt~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNll----v~d~g~~-gvVI~l~~ 87 (302)
T PRK14652 25 APRTAVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTL----VADAGVR-GVVLRLPQ 87 (302)
T ss_pred ccccEeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCccee----ecCCCEe-eEEEEecC
Confidence 467888876 8999999999999999999999999999999999995 3566554 89999976
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=99.27 E-value=1.2e-11 Score=90.38 Aligned_cols=64 Identities=19% Similarity=0.318 Sum_probs=54.9
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
..+++++++ |++++.|++++||++++++|+++++|++++|+|||+. +.+++++ |++|++++|++
T Consensus 26 ~~~tt~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll----~~d~g~~-GvvI~l~~l~~ 91 (307)
T PRK13906 26 KRYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNII----IREGGIR-GIVISLLSLDH 91 (307)
T ss_pred ccceEcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEe----ecCCCcc-eEEEEecCccc
Confidence 356777765 8999999999999999999999999999999999996 3555554 99999988864
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase
Back Show alignment and domain information
Probab=99.26 E-value=1.6e-11 Score=88.83 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=53.4
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
++++++++ |++++.|+|++||++++++|+++++|++++|+|||+.. ++.+. +|++|++.+|+.
T Consensus 3 ~~tt~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~----~d~~~-~gvvi~l~~~~~ 67 (284)
T TIGR00179 3 EFTTYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLI----LDDGR-GGVIINLGKGID 67 (284)
T ss_pred CcceeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEE----ccCCc-CeEEEECCCCce
Confidence 35778766 89999999999999999999999999999999999973 33333 589999988753
This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=99.24 E-value=2.4e-11 Score=88.24 Aligned_cols=63 Identities=14% Similarity=0.388 Sum_probs=53.8
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCC-CCC
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQ-MQS 89 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~-m~~ 89 (90)
++++|+++ |++++.|+|++||++++++|+++++|+.++|+|||+. ..+++++ |++|++++ |+.
T Consensus 21 ~~~t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll----~~d~g~~-gvvI~l~~~l~~ 86 (298)
T PRK13905 21 RYTSFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLL----VRDGGIR-GVVIRLGKGLNE 86 (298)
T ss_pred ccceeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEE----ecCCCcc-eEEEEecCCcce
Confidence 55778876 8999999999999999999999999999999999985 2444443 89999987 763
>TIGR00387 glcD glycolate oxidase, subunit GlcD
Back Show alignment and domain information
Probab=99.22 E-value=1.6e-11 Score=92.31 Aligned_cols=53 Identities=26% Similarity=0.487 Sum_probs=47.7
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 33 WCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 33 vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
|++|+|++||++++++|+++++|++|+|+|||+.++..+.+ ++++|||++||+
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~----~~vvidl~~mn~ 53 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE----GGLVLVFKHMNK 53 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC----CeEEEEhHHcCc
Confidence 57899999999999999999999999999999988876443 589999999986
This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
>KOG1233|consensus
Back Show alignment and domain information
Probab=99.21 E-value=1.7e-11 Score=92.64 Aligned_cols=86 Identities=40% Similarity=0.590 Sum_probs=72.6
Q ss_pred cchhHHHHHHHHhccCccc----cceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccc
Q psy4717 3 STEDVEKVVQVAHDHNLVV----NHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRT 78 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~ 78 (90)
|-|..|||.+ .|+|.++. .+..|+.-|+.|++|++.+||.++++.|.+|++-++|+|||++.+++..+|..+-+.
T Consensus 131 S~Ea~dRl~R-~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~ 209 (613)
T KOG1233|consen 131 SNEARDRLMR-GHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRA 209 (613)
T ss_pred chhHHHHHHh-hcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCccccee
Confidence 5688999998 99998761 122233449999999999999999999999999999999999999999888877666
Q ss_pred eEEEEcCCCCC
Q psy4717 79 IISLDTSQMQS 89 (90)
Q Consensus 79 gvvIdl~~m~~ 89 (90)
-+.+|++.||+
T Consensus 210 iislDtsqmnr 220 (613)
T KOG1233|consen 210 IISLDTSQMNR 220 (613)
T ss_pred EEEecHHhhhh
Confidence 67888888885
>PLN02441 cytokinin dehydrogenase
Back Show alignment and domain information
Probab=99.21 E-value=7e-11 Score=91.73 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=53.3
Q ss_pred eeeecCccEEEEcCCHHHHHHHHHHHH--hCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 24 QAIFIGTRYWCITESTEDVEKVVQVAH--DHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 24 ~~~~~~p~~vv~P~s~~~v~~vv~~a~--~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
..++..|.+|++|+|++||+++|++|+ ++++++.++|+||++.+++. .+ +|++|||++||+
T Consensus 59 ~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~-~~----~GivIdms~Ln~ 121 (525)
T PLN02441 59 NLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQ-AP----GGVVVDMRSLRG 121 (525)
T ss_pred cccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCcc-CC----CeEEEECCCCCC
Confidence 336677999999999999999999997 67999999999999987774 43 489999999986
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=99.16 E-value=1e-10 Score=85.10 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=53.7
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
.++++|+++ +++++.|++++|+++++++|+++++|++++|+|||+. +.|++++ |++|+++++
T Consensus 10 ~~~tt~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL----~~d~g~~-GvVI~l~~~ 73 (295)
T PRK14649 10 APYTSWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLL----VRDEGFD-GLVARYRGQ 73 (295)
T ss_pred ccccEeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEE----EeCCCcC-eEEEEecCC
Confidence 356778877 8999999999999999999999999999999999996 4566564 999999764
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=99.11 E-value=2e-10 Score=83.77 Aligned_cols=63 Identities=19% Similarity=0.372 Sum_probs=54.5
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
.+|++|+++ +++++.|++++|+++++++|++ ++|++++|+|||+. ..|++++ |+||.+.+|+.
T Consensus 23 ~~~tt~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlL----v~d~g~~-gvVI~l~~~~~ 87 (297)
T PRK14653 23 KCHVSFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVL----PKDEPMD-FVVVSTERLDD 87 (297)
T ss_pred cccCEeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEE----EecCCcc-EEEEEeCCcCc
Confidence 466888877 8999999999999999999999 99999999999996 4566664 99999866754
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=99.09 E-value=3.2e-10 Score=84.73 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=52.5
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTS 85 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~ 85 (90)
..+++|+++ |++++.|+|++|+++++++|+++++|++++|+|||+. +.|++++ |+||+++
T Consensus 22 ~~~tt~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlL----v~D~g~~-GvVI~l~ 83 (363)
T PRK13903 22 APLTTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLV----IADDGFD-GTVVRVA 83 (363)
T ss_pred ccccEeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEe----ECCCCcc-EEEEEeC
Confidence 356778876 8999999999999999999999999999999999996 4666664 8999986
>KOG1231|consensus
Back Show alignment and domain information
Probab=99.04 E-value=4.9e-10 Score=85.46 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=55.3
Q ss_pred HHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhC--CCcEEEEcCCCCCCCCcccCCCCccceEEEEcCC
Q psy4717 10 VVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDH--NLVIIPFGGGTNVTGAVACPENELRTIISLDTSQ 86 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~--~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~ 86 (90)
++..+++.+- .+...|.+|.+|+|++||+++++.|+.. .+|++|+|+||++.|++++.. +|++|.|+.
T Consensus 49 ~a~~s~dFg~-----~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~----~GvvV~m~~ 118 (505)
T KOG1231|consen 49 VAHASTDFGN-----RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR----GGVVVCMDS 118 (505)
T ss_pred hhhhhhhccc-----cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC----CCeEEEEeh
Confidence 4444455542 3667799999999999999999999999 899999999999999997545 487777753
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases
Back Show alignment and domain information
Probab=99.04 E-value=7.7e-10 Score=84.23 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=51.0
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
+...|.+|+.|+|++||+++|++|+++++++.++|+||++.+... . +|++|||++||+
T Consensus 11 ~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~-~-----~gvvIdl~~l~~ 68 (438)
T TIGR01678 11 YSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC-T-----DGFLIHLDKMNK 68 (438)
T ss_pred ccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc-C-----CeEEEEhhhcCC
Confidence 556699999999999999999999999999999999999875442 2 489999999975
This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=99.00 E-value=9.9e-10 Score=81.87 Aligned_cols=63 Identities=17% Similarity=0.401 Sum_probs=54.6
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQ 88 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~ 88 (90)
.++++|+++ +++++.|+|.+|+++++++|+++++|++++|+|||+. +.|++++ |+||.+.+|+
T Consensus 19 a~~tT~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL----~~D~g~~-G~VI~l~~~~ 83 (354)
T PRK14648 19 AERCSFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVL----IADEGVP-GLMLSLRRFR 83 (354)
T ss_pred cccceeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEE----EeCCCcc-EEEEEeCCcC
Confidence 356788877 8999999999999999999999999999999999996 4666675 9999885554
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=98.94 E-value=2.4e-09 Score=78.36 Aligned_cols=63 Identities=21% Similarity=0.425 Sum_probs=53.8
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCC-ccceEEEEcCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENE-LRTIISLDTSQMQ 88 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~-~~~gvvIdl~~m~ 88 (90)
.++++++++ +++++.|+|.+|+++++++|.++++|++++|+|||+. +.|++ ++ |++|.+.+|+
T Consensus 22 ~~~tt~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlL----v~D~g~~~-g~vi~~~~~~ 87 (302)
T PRK14650 22 ANYTTYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNIL----INDEEEID-FPIIYTGHLN 87 (302)
T ss_pred cccceeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEE----EECCCccc-eEEEEECCcC
Confidence 356778877 8999999999999999999999999999999999996 46666 54 8888875554
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase
Back Show alignment and domain information
Probab=98.93 E-value=4.4e-09 Score=82.30 Aligned_cols=62 Identities=8% Similarity=0.067 Sum_probs=50.3
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEc-CCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFG-GGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G-~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
+...|.+|++|+|++||+++|++|+++++++.++| +||++.+... ++ +.++|++|||++||+
T Consensus 28 ~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~-t~-~~~ggvvIdL~~Ln~ 90 (557)
T TIGR01677 28 STCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLAC-PD-GSDGALLISTKRLNH 90 (557)
T ss_pred ccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccc-cC-CCCCEEEEEcccCCC
Confidence 45569999999999999999999999999999996 5888765442 32 122379999999986
This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
>TIGR01676 GLDHase galactonolactone dehydrogenase
Back Show alignment and domain information
Probab=98.92 E-value=2.9e-09 Score=83.04 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=50.7
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
+...|..+++|+|++||+++|+.|++++.++.|+|+||++.+... ++ +.+|||++||+
T Consensus 58 ~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~-t~-----g~lldL~~ln~ 115 (541)
T TIGR01676 58 HEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGL-SR-----AGMVNLALMDK 115 (541)
T ss_pred cccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCccc-CC-----CeEEEhhhCCC
Confidence 445599999999999999999999999999999999999987664 43 45799999985
This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=98.92 E-value=3.2e-09 Score=78.66 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=52.1
Q ss_pred ccceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCC
Q psy4717 21 VNHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQ 88 (90)
Q Consensus 21 ~~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~ 88 (90)
.++++|+++ +++++.|+|++|+++++++|+++++|++++|+|||+. +.| +++ |++|.+. |+
T Consensus 10 ~~~tt~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlL----v~D-~~~-g~vI~~~-~~ 72 (334)
T PRK00046 10 KPLNTFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVL----FTE-DFD-GTVLLNR-IK 72 (334)
T ss_pred cccceeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEE----ECC-CCC-EEEEEec-CC
Confidence 356788887 8999999999999999999999999999999999996 455 554 8988873 54
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=98.77 E-value=2.5e-08 Score=72.77 Aligned_cols=62 Identities=15% Similarity=0.333 Sum_probs=53.2
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCC
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQ 88 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~ 88 (90)
.+++|+++ ++.++.|++++|+.+++++|.+.++|+.++|+|||+. +.|++. ++++|.+.+++
T Consensus 11 ~~ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlL----v~d~g~-~gvvi~~~~~~ 74 (291)
T COG0812 11 RYTTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLL----VRDGGI-GGVVIKLGKLN 74 (291)
T ss_pred cceeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEE----EecCCC-ceEEEEccccc
Confidence 45778876 8999999999999999999999999999999999985 355554 59999887654
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Back Show alignment and domain information
Probab=98.75 E-value=3.1e-08 Score=77.80 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=49.1
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
....|.+++.|+|++||+++|++|+++++++.++|+||+..+... .+ +.+|||++|++
T Consensus 93 ~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~-td-----~glIdL~~l~~ 150 (573)
T PLN02465 93 HEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAF-SR-----EGMVNLALMDK 150 (573)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeee-CC-----CEEEECcCCCC
Confidence 345599999999999999999999999999999999998865553 43 45689998875
>KOG1232|consensus
Back Show alignment and domain information
Probab=98.70 E-value=6.3e-09 Score=78.50 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=54.4
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
|+.....+..|+|+++|++++++|++.++.++|+||-|++.||+.|.- +-|||+|.+||+
T Consensus 86 yrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf----DEiVlsl~~mNK 145 (511)
T KOG1232|consen 86 YRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF----DEIVLSLGLMNK 145 (511)
T ss_pred ccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch----HHHhhhhhhhcc
Confidence 566689999999999999999999999999999999999999997655 479999999985
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase
Back Show alignment and domain information
Probab=98.66 E-value=4.1e-08 Score=74.28 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=46.4
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
+...|.+++.|+|++||+++|+.|++ ++.++|+||++.+.. .. +|++|||++||+
T Consensus 8 ~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~--~~----~g~~idl~~l~~ 62 (419)
T TIGR01679 8 QVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLA--CT----DGTMISLTGLQG 62 (419)
T ss_pred ccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcc--cC----CCEEEEhhHcCC
Confidence 45569999999999999999999974 799999999987543 22 479999999975
This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=98.35 E-value=9.3e-07 Score=64.07 Aligned_cols=53 Identities=15% Similarity=0.323 Sum_probs=44.1
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCC
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQ 86 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~ 86 (90)
+|++|+++ +++++ |++++|+.+++ ++|++++|+|||+. +.|++++ |++|.+.+
T Consensus 11 ~~tt~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL----~~D~g~~-g~vI~l~~ 65 (273)
T PRK14651 11 RYTTLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLL----VSDAGVP-ERVIRLGG 65 (273)
T ss_pred cccEeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEE----EcCCCcc-eEEEEECC
Confidence 56788876 67777 99999999988 59999999999996 5677775 89998854
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Back Show alignment and domain information
Probab=98.24 E-value=2.8e-06 Score=63.43 Aligned_cols=46 Identities=17% Similarity=0.061 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
.++||+++|++|+++++|+.|+|+||+..++. +. .+++|||++||+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~-~~-----~~~vldl~~ln~ 48 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR-AL-----AGEVLDTRAHRG 48 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC-CC-----CCeEEEcccCCC
Confidence 47999999999999999999999998655444 23 267999999986
>KOG4730|consensus
Back Show alignment and domain information
Probab=97.68 E-value=5.6e-05 Score=58.33 Aligned_cols=54 Identities=11% Similarity=0.173 Sum_probs=47.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
++-|-+|++++|+.++|+.|++++..+.+.|.||+...-.+ .+ |.+|+|..||+
T Consensus 50 aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~c-td-----g~lisl~~lnk 103 (518)
T KOG4730|consen 50 AANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVC-TD-----GLLISLDKLNK 103 (518)
T ss_pred hcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCccee-cc-----ccEEEhhhhcc
Confidence 66677899999999999999999999999999999986663 54 79999999985
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Back Show alignment and domain information
Probab=97.07 E-value=0.00073 Score=48.72 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=34.4
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEE
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIIS 81 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvv 81 (90)
+|++|+++ +++++.|++.+ + ++|++++|+|||+. +.|++. ++++
T Consensus 9 ~~tt~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlL----v~D~g~-~~vv 54 (257)
T PRK13904 9 KYSSVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLL----ISPNPK-NLAI 54 (257)
T ss_pred hcCceeECceEEEEEEechhh-h----------CCCeEEEeceeEEE----EecCCc-cEEE
Confidence 46778887 78899998887 5 89999999999996 466653 3555
>COG4359 Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Probab=88.01 E-value=0.68 Score=32.53 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCC
Q psy4717 42 VEKVVQVAHDHNLVIIPFGGGTNV 65 (90)
Q Consensus 42 v~~vv~~a~~~~i~v~~~G~G~n~ 65 (90)
+.+.++||+++++|+++.++|.+.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~ 101 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDP 101 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCch
Confidence 456789999999999999999986
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain
Back Show alignment and domain information
Probab=87.58 E-value=0.51 Score=31.64 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=31.9
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 32 YWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
-++.|+|.+|+.++++ . +-...+.+|||.+.... ..+......+||++++
T Consensus 4 ~~~~P~sl~ea~~ll~--~--~~~a~~vaGgT~l~~~~--~~~~~~~~~lIdl~~i 53 (171)
T PF00941_consen 4 EYFRPKSLEEALELLA--K--GPDARIVAGGTDLGVQM--REGILSPDVLIDLSRI 53 (171)
T ss_dssp EEEE-SSHHHHHHHHH--H--GTTEEEESS-TTHHHHH--HTTS---SEEEEGTTS
T ss_pred EEEccCCHHHHHHHHh--c--CCCCEEEeCCCccchhc--ccCccccceEEEeEEe
Confidence 4789999999999998 2 23578899999874222 1111113589999876
They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
>PRK09799 putative oxidoreductase; Provisional
Back Show alignment and domain information
Probab=85.62 E-value=2.1 Score=30.67 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=33.4
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 32 YWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
-+..|+|.+|+.++++ +++-...+++|||.+.... +.....++||+.++
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~----~~~~~~~lIdi~~i 52 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP----TRTDKKIAISLQDL 52 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh----CCCCCCEEEEcCCC
Confidence 4789999999998876 3432356799999984221 11123688998865
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides
Back Show alignment and domain information
Probab=84.99 E-value=1.1 Score=32.52 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|++.||.++|-
T Consensus 70 T~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 70 TYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 5699999999999999999984
These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex)
Back Show alignment and domain information
Probab=84.93 E-value=1.1 Score=33.11 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|++.||.|+|-
T Consensus 73 T~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 7899999999999999999984
SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins
Back Show alignment and domain information
Probab=84.35 E-value=1.3 Score=32.39 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.7
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 36 TESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 36 P~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
+=|.+|+++++++|+++||.++|-
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEec
Confidence 347899999999999999999984
GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3
Back Show alignment and domain information
Probab=83.89 E-value=1.1 Score=32.59 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|+++||.|+|-
T Consensus 71 T~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 71 TKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp EHHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCceeee
Confidence 5699999999999999999984
2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin
Back Show alignment and domain information
Probab=83.12 E-value=1.5 Score=32.27 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
=|.+|+++++++|++.||.++|-
T Consensus 65 yT~~di~elv~yA~~rgI~vIPE 87 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPE 87 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEe
Confidence 37799999999999999999984
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin
Back Show alignment and domain information
Probab=82.84 E-value=1.6 Score=32.59 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|+++||.|+|-
T Consensus 84 T~~di~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPE 105 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 6899999999999999999984
Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins
Back Show alignment and domain information
Probab=82.30 E-value=1.4 Score=32.30 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|+++||.++|-
T Consensus 80 T~~di~eiv~yA~~rgI~vIPE 101 (326)
T cd06564 80 TKEEFKELIAYAKDRGVNIIPE 101 (326)
T ss_pred cHHHHHHHHHHHHHcCCeEecc
Confidence 7799999999999999999984
Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit
Back Show alignment and domain information
Probab=81.50 E-value=4.1 Score=29.16 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=31.9
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 33 WCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 33 vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
++.|+|.+|+.++++ +++-.-.+++|||.+.-... .. ...++||+.++
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~--~~--~~~~lIdl~~i 51 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPT--RT--DKKVAISLDKL 51 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhc--cc--CCCEEEEcCCC
Confidence 689999999998876 34323467899999853221 11 12578988764
This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides
Back Show alignment and domain information
Probab=81.45 E-value=1.9 Score=32.09 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|++.||.|+|=
T Consensus 68 T~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 8899999999999999999984
The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
>KOG4498|consensus
Back Show alignment and domain information
Probab=81.03 E-value=6.6 Score=27.48 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=45.3
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTS 85 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~ 85 (90)
+-.+|.||+.=+-++|++.+-.+..++|++++..|.|+-...........+.+-|.+|..
T Consensus 57 ~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD~~ 116 (197)
T KOG4498|consen 57 FVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLDPH 116 (197)
T ss_pred EeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhcccCcceeEEEcCc
Confidence 345699999999999999999999999999999998876544443233334445777664
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 90
d1f0xa2 265
D-lactate dehydrogenase {Escherichia coli [TaxId:
99.57 d1wvfa2 236
Flavoprotein subunit of p-cresol methylhydroxylase
99.56 d1w1oa2 206
Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId
99.5 d1e8ga2 268
Vanillyl-alcohol oxidase {Fungus (Penicillium simp
99.4 d1hska1 194
Uridine diphospho-N-Acetylenolpyruvylglucosamine r
99.34 d2i0ka2 216
Cholesterol oxidase {Brevibacterium sterolicum [Ta
99.18 d1uxya1 198
Uridine diphospho-N-Acetylenolpyruvylglucosamine r
99.1 d1jaka1 356
beta-N-acetylhexosaminidase {Streptomyces plicatus
84.78 d1yhta1 344
Dispersin B, DspB {Actinobacillus actinomycetemcom
84.46 d1nowa1 353
beta-hexosaminidase B {Human (Homo sapiens) [TaxId
83.8 d1qbaa3 443
Bacterial chitobiase (beta-N-acetylhexosaminidase)
83.59 d1n62c2 177
Carbon monoxide (CO) dehydrogenase flavoprotein, N
82.93 d2gjxa1 362
beta-hexosaminidase A {Human (Homo sapiens) [TaxId
82.28 d1ffvc2 177
Carbon monoxide (CO) dehydrogenase flavoprotein, N
80.37
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: D-lactate dehydrogenase
species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=6.9e-15 Score=102.64 Aligned_cols=79 Identities=11% Similarity=0.096 Sum_probs=61.5
Q ss_pred chhHHHHHHHHhccCccccceeeecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCC-ccceEEE
Q psy4717 4 TEDVEKVVQVAHDHNLVVNHQAIFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENE-LRTIISL 82 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~-~~~gvvI 82 (90)
||+.++.. |+.|. +.++..|.+||+|+|++||+++|++|+++++|++|+|+||++.|++.+..++ ..+.+++
T Consensus 19 td~~~~~~-ys~d~------s~~~~~p~aVV~P~s~~eV~~iv~~a~~~~~pv~~rGgGTsl~Gg~~p~~g~~~~~~vv~ 91 (265)
T d1f0xa2 19 TDPAKTAR-YRKGF------RSGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVII 91 (265)
T ss_dssp CCHHHHHH-HHBCS------SSCBBCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCSSSTTSCCBSCCSSCEEEE
T ss_pred eCHHHHHH-hhccc------cccCCCCCEEEeCCCHHHHHHHHHHHHhhccccceecccccccccccccccccccceeee
Confidence 45555543 35555 2355679999999999999999999999999999999999999998633221 1235899
Q ss_pred EcCCCCC
Q psy4717 83 DTSQMQS 89 (90)
Q Consensus 83 dl~~m~~ 89 (90)
++++|++
T Consensus 92 ~~~~m~~ 98 (265)
T d1f0xa2 92 STLRLDK 98 (265)
T ss_dssp ECTTCCC
T ss_pred ecccccc
Confidence 9999985
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]
Probab=99.56 E-value=6.6e-15 Score=100.79 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=52.5
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
+...|++|++|+|++||+++|++|+++++|+.++|+|||+.+++..+.. +++|+|||++||+
T Consensus 48 ~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~i~~~g~G~s~~~g~~~~~~--~~~ividl~~mn~ 109 (236)
T d1wvfa2 48 AAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQ--RGQVILDLKKMNK 109 (236)
T ss_dssp GGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTTSCSS--TTCEEEECTTCCC
T ss_pred cCcCCCEEEecCCHHHHHHHHHHHHcCCcceeccccccccccccccccc--ceEEEeecccccc
Confidence 3456999999999999999999999999999999999998665543322 1589999999985
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]
Probab=99.50 E-value=1.8e-14 Score=96.68 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=53.4
Q ss_pred eeeecCccEEEEcCCHHHHHHHHHHHHhC---CCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 24 QAIFIGTRYWCITESTEDVEKVVQVAHDH---NLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 24 ~~~~~~p~~vv~P~s~~~v~~vv~~a~~~---~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
.++...|.+|++|+|++||+++|++|+++ ++|+.++|+||++.+.+. .+ ++|+|||++||+
T Consensus 24 ~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~-~~----~~ividl~~l~~ 87 (206)
T d1w1oa2 24 NITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAF-AP----GGVVVNMASLGD 87 (206)
T ss_dssp CSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTC-CT----TSEEEEGGGGGC
T ss_pred cCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcc-cC----CCEeeeccccce
Confidence 44677899999999999999999999997 689999999999987764 33 489999999875
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]
Probab=99.40 E-value=2.8e-13 Score=94.11 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=47.5
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCC-CCC
Q psy4717 30 TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQ-MQS 89 (90)
Q Consensus 30 p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~-m~~ 89 (90)
|++|++|+|++||+++|++|+++++|++|+|+|++...+...+.- .++|+|||++ ||+
T Consensus 66 P~~Vv~P~s~~eV~~iv~~a~~~~~~v~~~g~G~~~~~~~~~~~~--~~~ividls~~mn~ 124 (268)
T d1e8ga2 66 ASAIVAPRNVADVQSIVGLANKFSFPLWPISIGRNSGYGGAAPRV--SGSVVLDMGKNMNR 124 (268)
T ss_dssp CSEEECCSSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTTCCSS--TTCEEEECTTTCCC
T ss_pred CCEEEeCCCHHHHHHHHHHHHHcCCCEEecccccccccccccccc--CCceeecchhhhhh
Confidence 999999999999999999999999999999999876433322211 1589999975 885
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
domain: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
species: Staphylococcus aureus [TaxId: 1280]
Probab=99.34 E-value=9e-13 Score=87.87 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=53.2
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCCC
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQS 89 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~~ 89 (90)
++++|+++ +++++.|+|.+||++++++|+++++|++++|+|||+. +.+.+++ |++|++.+++.
T Consensus 25 ~~tt~~vGG~a~~~v~p~s~~el~~~~~~a~~~~ip~~v~G~GSNll----~~d~~~~-g~vi~l~~~~~ 89 (194)
T d1hska1 25 RYTYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNII----IREGGIR-GIVISLLSLDH 89 (194)
T ss_dssp GTCTTSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCSSEE----ECTTCEE-EEEEECTTCCC
T ss_pred hccEeeeCeEEEEEEecCCHHHHHHHHHHhhhcccceEEeccccccc----cCCCCce-eEEEEeecccc
Confidence 45567764 8999999999999999999999999999999999996 3555554 89999987753
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]}
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class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cholesterol oxidase
species: Brevibacterium sterolicum [TaxId: 1702]
Probab=99.18 E-value=2.9e-11 Score=80.73 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=49.7
Q ss_pred eecCccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCcc-ceEEEEcCCCCC
Q psy4717 26 IFIGTRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELR-TIISLDTSQMQS 89 (90)
Q Consensus 26 ~~~~p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~-~gvvIdl~~m~~ 89 (90)
+...|.+|++|+|++||+++|++|+++++++.++|+||++.++......... ..++++|++|+.
T Consensus 27 ~~~~p~~v~~P~s~edV~~~V~~A~~~~~~v~~~G~Ghs~~g~~~~~~~~~~~~~~~~~l~~~~~ 91 (216)
T d2i0ka2 27 IMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLNG 91 (216)
T ss_dssp SEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSCC
T ss_pred cccCCCEEEeCCCHHHHHHHHHHHHhCCeeEEEEcCcccccCCccccccCcceEEEEEecccccc
Confidence 3445999999999999999999999999999999999999876543322111 135666777764
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
domain: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=6.5e-11 Score=79.13 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=50.9
Q ss_pred cceeeecC--ccEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 22 NHQAIFIG--TRYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 22 ~~~~~~~~--p~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
++++|+++ +++++.|+|++|+++++++|+++++|++++|+|||+. ++|+ ..+++++++.++
T Consensus 5 ~~~t~~igG~A~~~~~p~s~edl~~~l~~~~~~~~p~~vlG~GSNlL----~~d~-~~~~vi~~~~~~ 67 (198)
T d1uxya1 5 PWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVL----FLED-YRGTVIINRIKG 67 (198)
T ss_dssp GGSTTCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEEESSCTTEE----ECSC-EEEEEEEECCCC
T ss_pred ccccCCcCeEeeEEEEECCHHHHHHHHHHHHHcCCCEEEEecccccc----cccc-ccCccccccccc
Confidence 55778876 8999999999999999999999999999999999995 3444 345777777654
>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]}
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class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-N-acetylhexosaminidase
species: Streptomyces plicatus [TaxId: 1922]
Probab=84.78 E-value=0.38 Score=32.86 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEc--CCCC
Q psy4717 37 ESTEDVEKVVQVAHDHNLVIIPFG--GGTN 64 (90)
Q Consensus 37 ~s~~~v~~vv~~a~~~~i~v~~~G--~G~n 64 (90)
=|.+|+++++++|++.||.|+|== =||.
T Consensus 72 yT~~di~~iv~ya~~rgI~viPEid~PgH~ 101 (356)
T d1jaka1 72 YTKAEYKEIVRYAASRHLEVVPEIDMPGHT 101 (356)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEECCCSSSC
T ss_pred cCHHHHHHHHHHHHHcCCeEeecCCCcchh
Confidence 367999999999999999999952 2665
>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus actinomycetemcomitans [TaxId: 714]}
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class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: Dispersin B, DspB
species: Actinobacillus actinomycetemcomitans [TaxId: 714]
Probab=84.46 E-value=0.4 Score=32.35 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|+++||.|+|-
T Consensus 78 t~~e~~~lv~yA~~rgI~viPe 99 (344)
T d1yhta1 78 SYRQLDDIKAYAKAKGIELIPE 99 (344)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCEEEec
Confidence 8899999999999999999884
>d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-hexosaminidase B
species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.80 E-value=0.44 Score=32.38 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE--cCCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF--GGGTNVT 66 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~--G~G~n~~ 66 (90)
|.+|+++++++|+++||.|+|- .=||...
T Consensus 68 T~~d~~~lv~yA~~rgI~iiPEid~PGH~~~ 98 (353)
T d1nowa1 68 TPNDVRMVIEYARLRGIRVLPEFDTPGHTLS 98 (353)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEESSSCTT
T ss_pred CHHHHHHHHHHHHHCCCEEEecccchhhHHH
Confidence 7799999999999999999985 4477654
>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase (beta-N-acetylhexosaminidase) {Serratia marcescens [TaxId: 615]}
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class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: Bacterial chitobiase (beta-N-acetylhexosaminidase)
species: Serratia marcescens [TaxId: 615]
Probab=83.59 E-value=0.44 Score=33.09 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEE
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPF 59 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~ 59 (90)
|.+|+++++++|++.||.|+|=
T Consensus 88 T~~ei~eiv~yA~~rgI~vIPE 109 (443)
T d1qbaa3 88 SRQDYIDIIKYAQARQIEVIPE 109 (443)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCEEeec
Confidence 6899999999999999999984
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
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class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CO dehydrogenase flavoprotein N-terminal domain-like
domain: Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain
species: Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]
Probab=82.93 E-value=0.28 Score=30.65 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=35.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCCC
Q psy4717 31 RYWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQMQ 88 (90)
Q Consensus 31 ~~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m~ 88 (90)
--++.|+|.+|+.++++-. +-...+++|||.+.... ..+......+||+.++.
T Consensus 6 f~y~~P~sl~ea~~ll~~~---~~~a~~laGGT~l~~~~--~~~~~~~~~lidl~~i~ 58 (177)
T d1n62c2 6 FDYHRPKSIADAVALLTKL---GEDARPLAGGHSLIPIM--KTRLATPEHLVDLRDIG 58 (177)
T ss_dssp CEEECCSSHHHHHHHHHHH---GGGEEEESSCTTHHHHH--HTTSCCCSEEEECTTCG
T ss_pred cceeCCCCHHHHHHHHHhc---CCCCeEEEecCchhhhh--hhccCCccccccccccc
Confidence 3579999999998887543 23478899999774211 12222236899998753
>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-N-acetylhexosaminidase catalytic domain
domain: beta-hexosaminidase A
species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.28 E-value=0.55 Score=32.07 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEc--CCCCCCC
Q psy4717 38 STEDVEKVVQVAHDHNLVIIPFG--GGTNVTG 67 (90)
Q Consensus 38 s~~~v~~vv~~a~~~~i~v~~~G--~G~n~~~ 67 (90)
|.+|+++++++|++.||.|+|-= =||....
T Consensus 69 T~~d~~elv~yA~~rgI~vIPEiD~PGH~~a~ 100 (362)
T d2gjxa1 69 TAQDVKEVIEYARLRGIRVLAEFDTPGHTLSW 100 (362)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCCSSSCTTT
T ss_pred CHHHHHHHHHHHHHcCCEEEecccccchhHHH
Confidence 88999999999999999999953 3776544
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
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class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CO dehydrogenase flavoprotein N-terminal domain-like
domain: Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain
species: Hydrogenophaga pseudoflava [TaxId: 47421]
Probab=80.37 E-value=0.39 Score=29.96 Aligned_cols=51 Identities=8% Similarity=0.054 Sum_probs=33.6
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccCCCCccceEEEEcCCC
Q psy4717 32 YWCITESTEDVEKVVQVAHDHNLVIIPFGGGTNVTGAVACPENELRTIISLDTSQM 87 (90)
Q Consensus 32 ~vv~P~s~~~v~~vv~~a~~~~i~v~~~G~G~n~~~~~~~~~~~~~~gvvIdl~~m 87 (90)
-+..|+|.+|+.++++-.+. ...+++|||.+..... .+......+||+.+.
T Consensus 7 ~~~~P~sl~Ea~~ll~~~~~---~a~~laGGTdl~~~~~--~~~~~~~~lidl~~i 57 (177)
T d1ffvc2 7 EYHAPKSVGEAVALLGQLGS---DAKLLAGGHSLLPMMK--LRFAQPEHLIDINRI 57 (177)
T ss_dssp EEECCSSHHHHHHHHHHHGG---GEEEESSCTTHHHHHH--TTSCCCSEEEECTTC
T ss_pred eEECCCCHHHHHHHHHhcCC---CCEEEEeCchhHhhhh--hcccCcccccCcccc
Confidence 47899999999888764432 4778999997742111 111113589999764
