Psyllid ID: psy4920

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MCMVMEISALHALHLTLDHATPLRNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGVKKKSLEALV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEHHHHHHHHcccccccccccccccccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHcc
Coil and Loop (DISEMBL)
MCMVMEISALHALHLTldhatplrneysesigcqiikqddvtqeglsglkscppdglVWRLAICSShalysmggaKSFAHVWFEFVQELRYRWEnslripgvkkkSLEALV
Flexible Loop (DISEMBL)
MCMVMEISALHALHLTLDHATPLRNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWenslripgvkkkslealv
Low Complexity Region (SEG)
MCMVMEISalhalhltldhatplRNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGVKKKSLEALV
Disordered region (IsUnstruct)
**MVMEISALHALHLTLDHATPLRNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIP***********
Disordered Region (DISOPRED)
***VMEISALHALHLTLD******************************LKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGVKKK******
Disordered Region (DISEMBL)
MCMVMEISALHALHLTLDHATPLRNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGVKKKSLEALV
Disordered Region (DISPRO)
MCMVMEISALHALHLTLDHATPLRNE****IGCQIIK****TQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGVKKKSL**L*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCMVMEISALHALHLTLDHATPLRNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGVKKKSLEALV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q642R9	978	Rab3 GTPase-activating pr	N/A	N/A	0.540	0.061	0.483	3e-10
Q6NUV0	969	Rab3 GTPase-activating pr	yes	N/A	0.486	0.055	0.518	1e-09
Q80UJ7	981	Rab3 GTPase-activating pr	yes	N/A	0.522	0.059	0.465	2e-09
Q15042	981	Rab3 GTPase-activating pr	yes	N/A	0.486	0.055	0.481	2e-09
P69735	775	Rab3 GTPase-activating pr	yes	N/A	0.486	0.069	0.481	2e-09
Q9VQ26	916	Rab3 GTPase-activating pr	yes	N/A	0.450	0.054	0.413	2e-05

>sp|Q642R9|RB3GP_XENLA Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis GN=rab3gap1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 38/60 (63%)

Query: 47  SGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGVKKKS 106
           S LKS P + L ++LA+C     +  GG K  AH+W EFV E+RYRWEN+  IPG+   S
Sbjct: 447 SQLKSAPSNSLTYKLALCLCMVNFYHGGVKGVAHLWQEFVLEMRYRWENNFLIPGLANGS 506

Probable catalytic subunit of a GTPase activating protein that has specificity for Rab3 subfamily. Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Specifically converts active Rab3-GTP to the inactive form Rab3-GDP.
Xenopus laevis (taxid: 8355)

>sp|Q6NUV0|RB3GP_DANRE Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio GN=rab3gap1 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%)

Query: 49  LKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
           LKSCP D L  RLA+C     +  GG ++ AH+W EFV E+RYRWEN+  I G+
Sbjct: 449 LKSCPSDSLTHRLALCICMVNFHHGGVRAVAHLWQEFVLEMRYRWENNCLIYGL 502

Probable catalytic subunit of a GTPase activating protein that has specificity for Rab3 subfamily. Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Specifically converts active Rab3-GTP to the inactive form Rab3-GDP.

Danio rerio (taxid: 7955)

>sp|Q80UJ7|RB3GP_MOUSE Rab3 GTPase-activating protein catalytic subunit OS=Mus musculus GN=Rab3gap1 PE=2 SV=4

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 36/58 (62%)

Query: 49  LKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGVKKKS 106
            KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+   S
Sbjct: 447 FKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGLASGS 504

Probable catalytic subunit of a GTPase activating protein that has specificity for Rab3 subfamily (RAB3A, RAB3B, RAB3C and RAB3D). Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Specifically converts active Rab3-GTP to the inactive form Rab3-GDP. Required for normal eye and brain development. May participate in neurodevelopmental processes such as proliferation, migration and differentiation before synapse formation, and non-synaptic vesicular release of neurotransmitters.

Mus musculus (taxid: 10090)

>sp|Q15042|RB3GP_HUMAN Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens GN=RAB3GAP1 PE=1 SV=3

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 49  LKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
            KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+
Sbjct: 448 FKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL 501

Probable catalytic subunit of a GTPase activating protein that has specificity for Rab3 subfamily (RAB3A, RAB3B, RAB3C and RAB3D). Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Specifically converts active Rab3-GTP to the inactive form Rab3-GDP. Required for normal eye and brain development. May participate in neurodevelopmental processes such as proliferation, migration and differentiation before synapse formation, and non-synaptic vesicular release of neurotransmitters.

Homo sapiens (taxid: 9606)

>sp|P69735|RB3GP_RAT Rab3 GTPase-activating protein catalytic subunit (Fragments) OS=Rattus norvegicus GN=Rab3gap1 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 49  LKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
            KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+
Sbjct: 241 FKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL 294

Probable catalytic subunit of a GTPase activating protein that has specificity for Rab3 subfamily (RAB3A, RAB3B, RAB3C and RAB3D). Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Specifically converts active Rab3-GTP to the inactive form Rab3-GDP. Required for normal eye and brain development. May participate in neurodevelopmental processes such as proliferation, migration and differentiation before synapse formation, and non-synaptic vesicular release of neurotransmitters.

Rattus norvegicus (taxid: 10116)

>sp|Q9VQ26|RB3GP_DROME Rab3 GTPase-activating protein catalytic subunit OS=Drosophila melanogaster GN=CG31935 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 8/58 (13%)

Query: 49  LKSCPPDGLVWRL----AICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
           +KS  PD LV RL    A C +H    +G  +  A VW  F ++LR  W+NSL +PG+
Sbjct: 445 IKSAVPDSLVCRLSCLLATCHAH----LGSVEGMAQVWAAFTRQLRLLWDNSLMVPGI 498


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.135    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,521,648
Number of Sequences: 539616
Number of extensions: 1531065
Number of successful extensions: 2764
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2757
Number of HSP's gapped (non-prelim): 7
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Probable catalytic subunit of a GTPase activating protein that has specificity for Rab3 subfamily. Rab3 proteins are involved in regulated exocytosis of neurotransmitters and hormones. Specifically converts active Rab3-GTP to the inactive form Rab3-GDP.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
270007053	490	hypothetical protein TcasGA2_TC013502 [T	0.486	0.110	0.629	7e-16
189237398	1956	PREDICTED: spalt-like protein [Tribolium	0.495	0.028	0.618	8e-16
345480061	919	PREDICTED: rab3 GTPase-activating protei	0.657	0.079	0.468	6e-13
383850096	924	PREDICTED: rab3 GTPase-activating protei	0.567	0.068	0.476	9e-13
242015298	505	Rab3 GTPase-activating protein catalytic	0.675	0.148	0.456	1e-12
340712472	924	PREDICTED: rab3 GTPase-activating protei	0.657	0.079	0.430	2e-12
307188228	528	Rab3 GTPase-activating protein catalytic	0.594	0.125	0.469	2e-12
350399810	924	PREDICTED: rab3 GTPase-activating protei	0.657	0.079	0.417	4e-12
328792063	924	PREDICTED: rab3 GTPase-activating protei	0.567	0.068	0.460	5e-12
322779177	484	hypothetical protein SINV_03522 [Solenop	0.549	0.126	0.475	2e-11

>gi|270007053|gb|EFA03501.1| hypothetical protein TcasGA2_TC013502 [Tribolium castaneum]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 43/54 (79%)

Query: 48  GLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPG 101
           G K+CP D L+WRL+I   HAL S+GG ++FAH+WFEF QE+RYRWE S+ IPG
Sbjct: 437 GFKTCPSDSLIWRLSIVLGHALQSLGGIRAFAHLWFEFAQEMRYRWEKSIPIPG 490

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237398|ref|XP_973229.2| PREDICTED: spalt-like protein [Tribolium castaneum]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 48   GLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
            G K+CP D L+WRL+I   HAL S+GG ++FAH+WFEF QE+RYRWE S+ IPG+
Sbjct: 1477 GFKTCPSDSLIWRLSIVLGHALQSLGGIRAFAHLWFEFAQEMRYRWEKSIPIPGL 1531

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480061|ref|XP_003424078.1| PREDICTED: rab3 GTPase-activating protein catalytic subunit [Nasonia vitripennis]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 6/79 (7%)

Query: 24  RNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWF 83
           R  YSE+ G  +   DD   +   G+K+C  DGLVWRLAI ++H  Y++GG  + A +W 
Sbjct: 419 RAPYSENSGYSV---DD---DQWRGIKTCAIDGLVWRLAIVAAHCAYNLGGLTALAQLWH 472

Query: 84  EFVQELRYRWENSLRIPGV 102
           EFVQE+R+RWE  + +PGV
Sbjct: 473 EFVQEVRFRWEKCIPLPGV 491

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850096|ref|XP_003700653.1| PREDICTED: rab3 GTPase-activating protein catalytic subunit [Megachile rotundata]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 47/63 (74%)

Query: 40  DVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRI 99
           +V ++   G+K+C  D LVWRLAI ++H  +++GG  + A +W+EFVQE+R+RWE ++ I
Sbjct: 424 NVDEDQWKGVKTCAMDSLVWRLAIVAAHCTHNLGGMTALAQLWYEFVQEIRFRWERNILI 483

Query: 100 PGV 102
           PGV
Sbjct: 484 PGV 486

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015298|ref|XP_002428301.1| Rab3 GTPase-activating protein catalytic subunit, putative [Pediculus humanus corporis] gi|212512886|gb|EEB15563.1| Rab3 GTPase-activating protein catalytic subunit, putative [Pediculus humanus corporis]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 6/81 (7%)

Query: 27  YSESIG-----CQII-KQDDVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAH 80
           Y+ES G     C I  K+ +  ++ L G+K+ P D L+WRLAI  +H ++S+G   S A+
Sbjct: 425 YNESTGGYSPDCNIEEKKFENIRKKLIGMKTAPYDSLLWRLAITMAHVIHSLGSLPSAAY 484

Query: 81  VWFEFVQELRYRWENSLRIPG 101
            W+EF QELR+RWEN + IPG
Sbjct: 485 FWYEFTQELRFRWENGILIPG 505

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712472|ref|XP_003394783.1| PREDICTED: rab3 GTPase-activating protein catalytic subunit-like [Bombus terrestris]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 6/79 (7%)

Query: 24  RNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWF 83
           +  YS+   C I       ++   G+K+C  D LVWRLAI ++H  + +GGA + A +W+
Sbjct: 414 KTPYSDLTTCNI------DEDQWKGVKTCAMDSLVWRLAIVAAHCTHYLGGATALAQLWY 467

Query: 84  EFVQELRYRWENSLRIPGV 102
           EFVQE+R+RWE S+ I GV
Sbjct: 468 EFVQEIRFRWERSILISGV 486

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188228|gb|EFN73060.1| Rab3 GTPase-activating protein catalytic subunit [Camponotus floridanus]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 47/66 (71%)

Query: 40  DVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRI 99
           +V  +   G+K+C  D LVWRL++ ++H  +++GGA + A +W EFVQE+R+RWE S+ I
Sbjct: 424 NVEDDQWKGVKTCTMDSLVWRLSVVAAHCTHNLGGATALAQLWHEFVQEIRFRWERSILI 483

Query: 100 PGVKKK 105
           PG  KK
Sbjct: 484 PGDIKK 489

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399810|ref|XP_003485646.1| PREDICTED: rab3 GTPase-activating protein catalytic subunit-like [Bombus impatiens]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 6/79 (7%)

Query: 24  RNEYSESIGCQIIKQDDVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWF 83
           +  YS+   C I       ++   G+K+C  D LVWRLAI ++H  + +GGA + A +W+
Sbjct: 414 KTPYSDLTTCNI------DEDQWKGVKTCAMDSLVWRLAIVAAHCTHYLGGATALAQLWY 467

Query: 84  EFVQELRYRWENSLRIPGV 102
           EFVQE+R+RWE ++ I GV
Sbjct: 468 EFVQEIRFRWERNILISGV 486

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792063|ref|XP_395106.3| PREDICTED: rab3 GTPase-activating protein catalytic subunit [Apis mellifera]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 47/63 (74%)

Query: 40  DVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRI 99
           +V ++   G+K+C  D LVWRLA+ ++H  +++GGA + A +W+EFVQE+R+RWE ++ I
Sbjct: 424 NVDEDQGKGVKTCAMDSLVWRLAVVAAHCTHNLGGAAALAQLWYEFVQEIRFRWERNILI 483

Query: 100 PGV 102
            GV
Sbjct: 484 SGV 486

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779177|gb|EFZ09513.1| hypothetical protein SINV_03522 [Solenopsis invicta]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query: 41  VTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIP 100
           V  +   G+K+C  D LVWRL+I ++H  +++GGA + A +W EFVQE+R+RWE ++ IP
Sbjct: 424 VEDDQWKGVKTCTMDSLVWRLSIVAAHCTHNLGGATALAQLWHEFVQEIRFRWEKNVLIP 483

Query: 101 G 101
           G
Sbjct: 484 G 484

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
ZFIN|ZDB-GENE-061027-53	969	rab3gap1 "RAB3 GTPase activati	0.486	0.055	0.518	1.3e-09
UNIPROTKB|E1BT09	988	RAB3GAP1 "Uncharacterized prot	0.504	0.056	0.5	1.4e-09
RGD|1306487	775	RGD1306487 "similar to RAB3 GT	0.477	0.068	0.490	4.3e-09
MGI|MGI:2445001	981	Rab3gap1 "RAB3 GTPase activati	0.513	0.058	0.473	4.6e-09
UNIPROTKB|F1S0D4	868	RAB3GAP1 "Uncharacterized prot	0.477	0.061	0.490	5e-09
UNIPROTKB|J9NVN6	878	RAB3GAP1 "Uncharacterized prot	0.477	0.060	0.490	5.1e-09
UNIPROTKB|A6H8Z3	935	RAB3GAP1 "Rab3 GTPase-activati	0.477	0.056	0.490	5.5e-09
UNIPROTKB|E2RK37	979	RAB3GAP1 "Uncharacterized prot	0.477	0.054	0.490	5.8e-09
UNIPROTKB|Q15042	981	RAB3GAP1 "Rab3 GTPase-activati	0.477	0.054	0.490	5.9e-09
UNIPROTKB|A4FUE5	982	RAB3GAP1 "RAB3GAP1 protein" [B	0.477	0.053	0.490	5.9e-09

ZFIN|ZDB-GENE-061027-53 rab3gap1 "RAB3 GTPase activating protein subunit 1" [Danio rerio (taxid:7955)]

 Score = 152 (58.6 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 28/54 (51%), Positives = 36/54 (66%)

Query:    49 LKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
             LKSCP D L  RLA+C     +  GG ++ AH+W EFV E+RYRWEN+  I G+
Sbjct:   449 LKSCPSDSLTHRLALCICMVNFHHGGVRAVAHLWQEFVLEMRYRWENNCLIYGL 502

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E1BT09 RAB3GAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query:    47 SGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
             S  KS P D L ++LA+C     +  GG K  AH+W EFV E+RYRWEN+  IPG+
Sbjct:   450 SQFKSAPSDSLTYKLALCLCMINFYHGGVKGVAHLWQEFVLEMRYRWENNYLIPGL 505

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

RGD|1306487 RGD1306487 "similar to RAB3 GTPase-activating protein" [Rattus norvegicus (taxid:10116)]

 Score = 146 (56.5 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:    50 KSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
             KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+
Sbjct:   242 KSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL 294

GO:0005097 "Rab GTPase activator activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IDA;IPI

GO:0060076 "excitatory synapse" evidence=IDA

MGI|MGI:2445001 Rab3gap1 "RAB3 GTPase activating protein subunit 1" [Mus musculus (taxid:10090)]

 Score = 147 (56.8 bits), Expect = 4.6e-09, P = 4.6e-09
 Identities = 27/57 (47%), Positives = 36/57 (63%)

Query:    50 KSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGVKKKS 106
             KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+   S
Sbjct:   448 KSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGLASGS 504

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0021854 "hypothalamus development" evidence=ISO

GO:0032851 "positive regulation of Rab GTPase activity" evidence=ISO

GO:0043010 "camera-type eye development" evidence=ISO

GO:0043087 "regulation of GTPase activity" evidence=ISO

GO:0060325 "face morphogenesis" evidence=ISO

UNIPROTKB|F1S0D4 RAB3GAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 146 (56.5 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:    50 KSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
             KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+
Sbjct:   333 KSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL 385

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|J9NVN6 RAB3GAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 146 (56.5 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:    50 KSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
             KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+
Sbjct:   349 KSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL 401

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|A6H8Z3 RAB3GAP1 "Rab3 GTPase-activating protein catalytic subunit" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:    50 KSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
             KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+
Sbjct:   405 KSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL 457

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|E2RK37 RAB3GAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 146 (56.5 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:    50 KSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
             KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+
Sbjct:   443 KSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL 495

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|Q15042 RAB3GAP1 "Rab3 GTPase-activating protein catalytic subunit" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:    50 KSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
             KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+
Sbjct:   449 KSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL 501

GO:0005097 "Rab GTPase activator activity" evidence=IDA

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0043087 "regulation of GTPase activity" evidence=IDA

GO:0007420 "brain development" evidence=IMP

GO:0043010 "camera-type eye development" evidence=IMP

GO:0060325 "face morphogenesis" evidence=IMP

GO:0021854 "hypothalamus development" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IDA

UNIPROTKB|A4FUE5 RAB3GAP1 "RAB3GAP1 protein" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:    50 KSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV 102
             KS P D L ++LA+C     +  GG K  AH+W EFV E+R+RWEN+  IPG+
Sbjct:   449 KSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFRWENNFLIPGL 501

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NUV0	RB3GP_DANRE	No assigned EC number	0.5185	0.4864	0.0557	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG2390|consensus	669		98.77

>KOG2390|consensus

Probab=98.77  E-value=7.3e-09  Score=92.71  Aligned_cols=64  Identities=17%  Similarity=0.167  Sum_probs=57.7

Q ss_pred             ccchhhcccCcCCCCCchHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhcCccccCC-CCCCccc
Q psy4920          40 DVTQEGLSGLKSCPPDGLVWRLAICSSHALYSMGGAKSFAHVWFEFVQELRYRWENSLRIPGV-KKKSLEA  109 (111)
Q Consensus        40 ~~~~e~~~~iKSAP~dSL~~RLAl~~~~c~~~~GGlravAhLW~EFV~ELRyrWEn~~~IPgl-~~~~p~~  109 (111)
                      +.+++.+.+.++||++|      .|++..+.+++|++.+|++|.+||.|+||+|+++..||+. ..++||.
T Consensus       192 ~~~~n~~n~~~~ap~~s------~~Ll~~~~~~~t~~~~a~~w~a~v~e~r~~w~~~s~ipw~~a~~~PDl  256 (669)
T KOG2390|consen  192 AHELNMLNAASMAPNQS------DDLLVNNVKLDTLFNYANPWSANVFEARYKWAKKSTIPWRLAIALPDL  256 (669)
T ss_pred             chhhhhhhHhhcCCCch------hHHHHHhhhccchhhhhhHHHHHHHHHHHHHhhcCcCCcccccCCCcc
Confidence            34588889999999999      6677778899999999999999999999999999999987 8899986

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00