Psyllid ID: psy513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
SKQTGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
skqtgsasgvdstqqhspsncpldkdqlgqhtWGFLHTVAayypdkpssdqqkdMSTFFTLLskfypcevcATDLAeqlkvrppatssqssLSQWLCWLHngvneklgkplfdctkvnerwrdgwsdgs
Flexible Loop (DISEMBL)
skqtgsasgvdstqqhspsNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVneklgkplfdctkvnerwrdgwsdgs
Low Complexity Region (SEG)
SKQTGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATssqsslsqwlcwlHNGVNEKLGKPLFDCTKVNERWRDGWSDGS
Disordered region (IsUnstruct)
***************************LGQHTWGFLHTVAAYYP***********STFFTLLSKFYPCEVCATDLAEQLK***********LSQWLCWLHNGVNEKLGKPLFDCTKVNERWRD******
Disordered Region (DISOPRED)
*************************DQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKV********SSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSD**
Disordered Region (DISEMBL)
********************CPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL*************SQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS
Disordered Region (DISPRO)
******************SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGW****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SKQTGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
P56213	198	FAD-linked sulfhydryl oxi	yes	N/A	0.860	0.560	0.603	1e-39
Q63042	198	FAD-linked sulfhydryl oxi	yes	N/A	0.860	0.560	0.594	3e-38
P55789	205	FAD-linked sulfhydryl oxi	yes	N/A	0.852	0.536	0.6	2e-37
Q8GXX0	191	FAD-linked sulfhydryl oxi	yes	N/A	0.798	0.539	0.485	4e-25
P27882	189	Mitochondrial FAD-linked	yes	N/A	0.961	0.656	0.395	2e-23
O14144	182	Mitochondrial FAD-linked	yes	N/A	0.705	0.5	0.494	5e-20
Q12284	196	FAD-linked sulfhydryl oxi	no	N/A	0.798	0.525	0.339	6e-17
Q9Y806	192	FAD-linked sulfhydryl oxi	no	N/A	0.713	0.479	0.336	3e-12
Q5UQV6	143	Probable FAD-linked sulfh	N/A	N/A	0.674	0.608	0.322	1e-06
Q5UP54	292	Probable FAD-linked sulfh	N/A	N/A	0.612	0.270	0.285	4e-05

>sp|P56213|ALR_MOUSE FAD-linked sulfhydryl oxidase ALR OS=Mus musculus GN=Gfer PE=2 SV=2

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 88/111 (79%)

Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
            +CP D+++LG+HTW FLHT+AAYYPD+P+ +QQ+DM+ F  + SKFYPCE CA D+ ++
Sbjct: 86  EDCPQDREELGRHTWAFLHTLAAYYPDRPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKR 145

Query: 79  LKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           +    P TS++ S SQWLC LHN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 146 IGRNQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 196

FAD-dependent sulfhydryl oxidase. Within the mitochondrial intermembrane space, participates in a chain of disulfide exchange reactions with MIA40, that generate disulfide bonds in a number of resident proteins with twin Cx3C and Cx9C motifs.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 8EC: .EC: 3EC: .EC: 2

>sp|Q63042|ALR_RAT FAD-linked sulfhydryl oxidase ALR OS=Rattus norvegicus GN=Gfer PE=1 SV=2

 Score =  157 bits (396), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 87/111 (78%)

Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
            +CP D+++LG++TW FLHT+AAYYPD P+ +QQ+DM+ F  + SKFYPCE CA D+ ++
Sbjct: 86  EDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKR 145

Query: 79  LKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           +    P TS++ S SQWLC LHN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 146 IDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 196

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Within the mitochondrial intermembrane space, participates in a chain of disulfide exchange reactions with MIA40, that generate disulfide bonds in a number of resident proteins with twin Cx3C and Cx9C motifs. May have a function in liver regeneration and spermatogenesis.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|P55789|ALR_HUMAN FAD-linked sulfhydryl oxidase ALR OS=Homo sapiens GN=GFER PE=1 SV=2

 Score =  153 bits (387), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 85/110 (77%)

Query: 20  NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
           +CP D+++LG+H+W  LHT+AAYYPD P+ +QQ+DM+ F  L SKFYPCE CA DL ++L
Sbjct: 94  DCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRL 153

Query: 80  KVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
               P T +++  +QWLC LHN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 154 CRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 203

Isoform 2: May act as an autocrine hepatotrophic growth factor promoting liver regeneration.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|Q8GXX0|ERV1_ARATH FAD-linked sulfhydryl oxidase ERV1 OS=Arabidopsis thaliana GN=ERV1 PE=1 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 65/103 (63%)

Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
           S  P+ K+ LG+ TW FLHT+AA YP+KP+  Q+KD+    T+LS+ YPC  CA    E 
Sbjct: 70  STGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEI 129

Query: 79  LKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERW 121
           L+  P    SQ   SQWLC +HN VN  LGK +F C +V+ RW
Sbjct: 130 LRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARW 172

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Oxidizes thioredoxin in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|P27882|ERV1_YEAST Mitochondrial FAD-linked sulfhydryl oxidase ERV1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV1 PE=1 SV=2

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 70/124 (56%)

Query: 4   TGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLS 63
           TG AS +    +      P D +QLG+ +W  LH+VAA YP +P+  Q+ +M  F  + S
Sbjct: 66  TGEASELMPGSRTYRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFS 125

Query: 64  KFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRD 123
             YPC  CA D  + ++   P   S+  L +W+C  HN VN+KL KP FDC    +RW+D
Sbjct: 126 HIYPCNWCAKDFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKD 185

Query: 124 GWSD 127
           GW +
Sbjct: 186 GWDE 189

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Required for the import and folding of small cysteine-containing proteins in the mitochondrial intermembrane space (IMS). Forms a redox cycle with MIA40 that involves a disulfide relay system. Important for maintaining the cysteine residues in MIA40 in an oxidized state. Reduced ERV1 is reoxidized by cytochrome c. Required for the maturation of cytoplasmic, but not of mitochondrial Fe/S proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|O14144|ERV1_SCHPO Mitochondrial FAD-linked sulfhydryl oxidase erv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv1 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 24  DKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKV-- 81
           D  +LG+ TW FLH +AA +P  P+  QQ DMS+F    SKFYPC  CA DL   +    
Sbjct: 78  DVAELGRSTWTFLHAMAANFPKNPTPTQQNDMSSFLYNFSKFYPCWSCAEDLRIWMAKYG 137

Query: 82  RPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDC 114
             P   S+ SL +W+C  HN VNE+LGKPLF+C
Sbjct: 138 NSPRVDSRESLCEWICEAHNDVNERLGKPLFNC 170

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation. Required for the import and folding of small cysteine-containing proteins in the mitochondrial intermembrane space (IMS).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|Q12284|ERV2_YEAST FAD-linked sulfhydryl oxidase ERV2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV2 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 64/103 (62%)

Query: 25  KDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPP 84
           K ++G+ +W + HT+ A +PD+P+ ++++ + TF  L ++ YPC  C+    + ++  P 
Sbjct: 78  KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 137

Query: 85  ATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSD 127
            TSS+++ + W C +HN VNE L K ++DC  + E +  G SD
Sbjct: 138 QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSD 180

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation in the endoplasmic reticulum lumen in parallel to ERO1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9Y806|ERV2_SCHPO FAD-linked sulfhydryl oxidase erv2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv2 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%)

Query: 33  WGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSL 92
           W  +HTV + YP++P+ D++  +  +    +   PC   + +L + L V PP TSS+ + 
Sbjct: 74  WKLIHTVVSNYPNRPTLDERDILRHYLFSSAITMPCGEYSVELQKILDVHPPQTSSRKAA 133

Query: 93  SQWLCWLHNGVNEKLGKPLFDCTKVNERWRDG 124
           + W C +HN +NEK+ +P   C   NER+  G
Sbjct: 134 TTWACKVHNQLNEKMNQPKTSCDGFNERYVIG 165

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation in the endoplasmic reticulum lumen.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|Q5UQV6|YR368_MIMIV Probable FAD-linked sulfhydryl oxidase R368 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R368 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 26  DQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRP-- 83
           +Q G + W F H VA  YP  P+ + +    TFF       PC  C  + A+ L   P  
Sbjct: 4   EQWGIYGWTFSHAVALGYPINPTEEDKLRYYTFFNSYRYVLPCGKCRINYADHLNKYPLT 63

Query: 84  -PATSSQSSLSQWLCWLHNGVNEKLGKPLF 112
               SS+ +L +W   +HN VN   GK + 
Sbjct: 64  DEVLSSRENLVKWTIDIHNVVNYYTGKKML 93

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation.

Acanthamoeba polyphaga (taxid: 5757)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

>sp|Q5UP54|YR596_MIMIV Probable FAD-linked sulfhydryl oxidase R596 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R596 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 29  GQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSS 88
           G   W F H V   YP  P+SD ++    +F  L    PC +C     + +     A ++
Sbjct: 41  GTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTN 100

Query: 89  Q-----SSLSQWLCWLHNGVNEKL 107
           +      +L++W   +HN VN KL
Sbjct: 101 EVLRNRHTLTKWFYDVHNAVNNKL 124

FAD-dependent sulfhydryl oxidase that catalyzes disulfide bond formation.

Acanthamoeba polyphaga (taxid: 5757)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
345479430	165	PREDICTED: FAD-linked sulfhydryl oxidase	0.968	0.757	0.624	1e-41
307169752	158	FAD-linked sulfhydryl oxidase ALR [Campo	0.852	0.696	0.7	1e-41
158295898	188	AGAP006470-PA [Anopheles gambiae str. PE	0.953	0.654	0.626	3e-41
91078400	161	PREDICTED: similar to AGAP006470-PA [Tri	0.860	0.689	0.666	3e-41
383848749	157	PREDICTED: FAD-linked sulfhydryl oxidase	1.0	0.821	0.596	1e-40
340719143	158	PREDICTED: LOW QUALITY PROTEIN: FAD-link	0.852	0.696	0.690	8e-40
350396173	158	PREDICTED: FAD-linked sulfhydryl oxidase	0.852	0.696	0.690	8e-40
170052758	179	augmenter of liver regeneration [Culex q	0.953	0.687	0.577	2e-39
242021714	162	Augmenter of liver regeneration, putativ	0.860	0.685	0.639	2e-39
322787969	132	hypothetical protein SINV_04448 [Solenop	0.852	0.833	0.681	2e-39

>gi|345479430|ref|XP_003423948.1| PREDICTED: FAD-linked sulfhydryl oxidase ALR-like [Nasonia vitripennis]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 93/125 (74%)

Query: 5   GSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSK 64
           GS      T      +CPLD+D+LG  TWGFLHT+AAYYP+ P+ +Q+KDM TFF L+SK
Sbjct: 39  GSDHKYTETMNARRKDCPLDRDELGSRTWGFLHTMAAYYPESPTVEQRKDMKTFFHLISK 98

Query: 65  FYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDG 124
           FYPC VCA DL EQLK  PP T S   LSQWLC +HN VN+KLGKP+FDC+ +N+RWRDG
Sbjct: 99  FYPCNVCAEDLQEQLKKSPPKTDSNHQLSQWLCDVHNEVNKKLGKPVFDCSLINQRWRDG 158

Query: 125 WSDGS 129
           W DGS
Sbjct: 159 WLDGS 163

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169752|gb|EFN62310.1| FAD-linked sulfhydryl oxidase ALR [Camponotus floridanus]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 86/110 (78%)

Query: 20  NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
           NCPLDKD+LG  +W FLHT+AAYYPDKPS +Q+ DM+ FF + SKFYPC +CA DL EQL
Sbjct: 47  NCPLDKDELGSKSWAFLHTMAAYYPDKPSEEQKADMNNFFHIFSKFYPCNICAKDLQEQL 106

Query: 80  KVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           K  PP T SQ  LSQWLC LHN VN KLGKP FDC  VN+RWRDGW DGS
Sbjct: 107 KYSPPETDSQEKLSQWLCKLHNEVNTKLGKPEFDCKLVNQRWRDGWLDGS 156

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295898|ref|XP_557147.3| AGAP006470-PA [Anopheles gambiae str. PEST] gi|157016253|gb|EAL40090.3| AGAP006470-PA [Anopheles gambiae str. PEST]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/123 (62%), Positives = 92/123 (74%)

Query: 7   ASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFY 66
           A   D     SP NCP+DK+QLG++TWG LHT+AAYYP  P+  +++++ TFFT LSK Y
Sbjct: 64  ADSSDDRSGGSPPNCPIDKEQLGRYTWGLLHTIAAYYPTTPTDAEERNVRTFFTSLSKLY 123

Query: 67  PCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWS 126
           PCE CA D  ++LK  PP T SQ +LSQWLC +HN VN KLGKP FDCTKVNERWRDGW 
Sbjct: 124 PCEYCAKDFQQELKEMPPETKSQHALSQWLCRIHNRVNVKLGKPEFDCTKVNERWRDGWL 183

Query: 127 DGS 129
           DGS
Sbjct: 184 DGS 186

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078400|ref|XP_974453.1| PREDICTED: similar to AGAP006470-PA [Tribolium castaneum] gi|270003989|gb|EFA00437.1| hypothetical protein TcasGA2_TC003291 [Tribolium castaneum]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 91/111 (81%)

Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
           ++CPLDKD+LG+ +WG LHT+AA YP+ P+  +QKDM++FFTL SKFYPC+ CA DL ++
Sbjct: 49  TDCPLDKDELGRSSWGLLHTIAAKYPENPTRTEQKDMTSFFTLFSKFYPCDFCAEDLRKE 108

Query: 79  LKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           LK  PP  +SQ  LSQWLC LHN VN KLGKP FDC+KVNERWRDGW+DGS
Sbjct: 109 LKADPPQIASQEDLSQWLCRLHNRVNNKLGKPEFDCSKVNERWRDGWADGS 159

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848749|ref|XP_003700010.1| PREDICTED: FAD-linked sulfhydryl oxidase ALR-like [Megachile rotundata]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 95/129 (73%)

Query: 1   SKQTGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFT 60
           +K++      D    +   +CPLDKD LG +TW FLHT+AAYYP+ PS++Q+ DM TFF 
Sbjct: 27  AKESEENQKKDQPVNNIRRDCPLDKDGLGSNTWSFLHTMAAYYPNNPSNEQKSDMKTFFN 86

Query: 61  LLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNER 120
           + +KFYPC VCA DL EQ+K  PP T SQ  LSQWLC +HNGVN+KLGKPLF+C  VN+R
Sbjct: 87  IFAKFYPCNVCAEDLQEQIKHFPPQTDSQEKLSQWLCDIHNGVNKKLGKPLFNCKLVNQR 146

Query: 121 WRDGWSDGS 129
           WRDGW DGS
Sbjct: 147 WRDGWLDGS 155

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719143|ref|XP_003398016.1| PREDICTED: LOW QUALITY PROTEIN: FAD-linked sulfhydryl oxidase ALR-like [Bombus terrestris]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 87/110 (79%)

Query: 20  NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
           +CPLDKD+LG  TW FLHT+AAYYPD P+ +Q+ DMS FF   SKFYPC VCA DL EQL
Sbjct: 47  DCPLDKDELGSRTWSFLHTMAAYYPDNPTDEQKSDMSKFFHTFSKFYPCYVCAEDLQEQL 106

Query: 80  KVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           K  PP T+SQS LSQWLC +HN VN+KLGKP FDC  V++RWRDGW DGS
Sbjct: 107 KXTPPQTNSQSQLSQWLCMIHNEVNKKLGKPEFDCKLVDQRWRDGWLDGS 156

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396173|ref|XP_003484466.1| PREDICTED: FAD-linked sulfhydryl oxidase ALR-like [Bombus impatiens]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 87/110 (79%)

Query: 20  NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
           +CPLDKD+LG  TW FLHT+AAYYPD P+ +Q+ DMS FF   SKFYPC VCA DL EQL
Sbjct: 47  DCPLDKDELGSRTWSFLHTMAAYYPDNPTDEQKLDMSKFFHTFSKFYPCYVCAEDLQEQL 106

Query: 80  KVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           K  PP T+SQS LSQWLC +HN VN+KLGKP FDC  V++RWRDGW DGS
Sbjct: 107 KKTPPQTNSQSQLSQWLCMIHNEVNKKLGKPEFDCKLVDQRWRDGWLDGS 156

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052758|ref|XP_001862367.1| augmenter of liver regeneration [Culex quinquefasciatus] gi|167873589|gb|EDS36972.1| augmenter of liver regeneration [Culex quinquefasciatus]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 95/123 (77%)

Query: 7   ASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFY 66
           A+   +T    P +CPLDK++LG+HTWG LHT+AAY+PD+P++++Q ++  FF   SK Y
Sbjct: 55  AAVTTNTGDQLPKHCPLDKERLGRHTWGLLHTMAAYFPDQPTAEEQSNVRQFFNAFSKVY 114

Query: 67  PCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWS 126
           PCE CA D  ++LK  PP T+SQ SLSQWLC +HN VN+K+GKP FDC++VNERWRDG +
Sbjct: 115 PCEYCAKDFQQELKTDPPETTSQHSLSQWLCRMHNRVNQKIGKPAFDCSRVNERWRDGPA 174

Query: 127 DGS 129
           DGS
Sbjct: 175 DGS 177

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021714|ref|XP_002431288.1| Augmenter of liver regeneration, putative [Pediculus humanus corporis] gi|212516556|gb|EEB18550.1| Augmenter of liver regeneration, putative [Pediculus humanus corporis]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 85/111 (76%)

Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
           SNCPL KD+LG+ TWGFLHT+AAYYPD P+ +Q+ D+  F  L S+FYPC VCA DL +Q
Sbjct: 50  SNCPLTKDELGRQTWGFLHTMAAYYPDNPTDEQKNDVHQFMKLFSRFYPCSVCAEDLQQQ 109

Query: 79  LKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           ++  PP T SQ   SQWLC +HN +N +LGKPLFDC  VNERWRDGW DGS
Sbjct: 110 IERFPPKTESQYEFSQWLCRIHNRINLRLGKPLFDCNTVNERWRDGWKDGS 160

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787969|gb|EFZ13810.1| hypothetical protein SINV_04448 [Solenopsis invicta]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 85/110 (77%)

Query: 20  NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
           +CPLDKD+LG  TW FLHT+AAYYPDKPS  Q+ DM++FF   SKFYPC +CA DL EQL
Sbjct: 21  DCPLDKDELGSKTWAFLHTMAAYYPDKPSERQKTDMNSFFHTFSKFYPCNICAEDLQEQL 80

Query: 80  KVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           K  PP T SQ  LSQWLC +HN VN+KLGK  FDC  VN+RWRDGW DGS
Sbjct: 81  KHSPPETGSQEKLSQWLCRIHNEVNKKLGKSEFDCKLVNQRWRDGWLDGS 130

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
UNIPROTKB|F1NSV1	189	GFER "Uncharacterized protein"	0.992	0.677	0.511	1.5e-33
MGI|MGI:107757	198	Gfer "growth factor, erv1 (S.	0.852	0.555	0.536	1.4e-32
ZFIN|ZDB-GENE-060810-186	191	gfer "growth factor, augmenter	0.992	0.670	0.484	6e-32
FB|FBgn0031068	261	Alr "Augmenter of liver regene	0.930	0.459	0.528	7.7e-32
RGD|61845	198	Gfer "growth factor, augmenter	0.852	0.555	0.527	1.6e-31
UNIPROTKB|H3BQQ4	130	GFER "Growth factor, augmenter	0.852	0.846	0.554	2e-31
UNIPROTKB|P55789	205	GFER "FAD-linked sulfhydryl ox	0.852	0.536	0.554	2e-31
UNIPROTKB|E2QWZ7	358	GFER "Uncharacterized protein"	0.852	0.307	0.527	8.8e-31
UNIPROTKB|F1RFB9	205	GFER "Uncharacterized protein"	0.906	0.570	0.504	2.3e-30
UNIPROTKB|E1BF52	205	GFER "Uncharacterized protein"	0.906	0.570	0.504	7.9e-30

UNIPROTKB|F1NSV1 GFER "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 66/129 (51%), Positives = 84/129 (65%)

Query:     2 KQTGSASGVDSTQQHSPS-NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFT 60
             K+  +A  V + ++  P  +CPLD +QLG+ TW FLHT+AAYYP++PS  QQ++M  F  
Sbjct:    59 KKQAAAGAVAAVEEKEPPPDCPLDSEQLGRSTWAFLHTMAAYYPERPSGTQQQEMRDFIH 118

Query:    61 LLSKFYPCEVCATDLAEQLKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNER 120
             L SKFYPCE CA DL E+L+   P T             HN VN KLGK  FDC++V+ER
Sbjct:   119 LFSKFYPCEHCAEDLRERLRTNQPDTSNRNNFSQWLCLLHNEVNRKLGKSEFDCSRVDER 178

Query:   121 WRDGWSDGS 129
             WRDGW DGS
Sbjct:   179 WRDGWKDGS 187

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:107757 Gfer "growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)" [Mus musculus (taxid:10090)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 59/110 (53%), Positives = 78/110 (70%)

Query:    20 NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
             +CP D+++LG+HTW FLHT+AAYYPD+P+ +QQ+DM+ F  + SKFYPCE CA D+ +++
Sbjct:    87 DCPQDREELGRHTWAFLHTLAAYYPDRPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRI 146

Query:    80 KVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
                 P T             HN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct:   147 GRNQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 196

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008083 "growth factor activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-060810-186 gfer "growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 63/130 (48%), Positives = 84/130 (64%)

Query:     2 KQTGSASGVDS--TQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFF 59
             KQ  SAS  +S   ++  P  CPLD+++LG+ +W FLHT+AAYYPD PS++QQ +M+ F 
Sbjct:    60 KQASSASVQESRPVEELKPVECPLDREELGRSSWSFLHTMAAYYPDAPSTEQQLEMTQFI 119

Query:    60 TLLSKFYPCEVCATDLAEQLKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNE 119
              L SK +PC+ CA DL  +LK   P               HN +N +LGKP FDC++V+E
Sbjct:   120 NLFSKVFPCDECAEDLRTRLKTNRPDAGSRHKLSQWLCRLHNDINIRLGKPEFDCSRVDE 179

Query:   120 RWRDGWSDGS 129
             RWRDGW DGS
Sbjct:   180 RWRDGWKDGS 189

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IMP;IDA

GO:0016971 "flavin-linked sulfhydryl oxidase activity" evidence=IMP;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031012 "extracellular matrix" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0001889 "liver development" evidence=IMP

FB|FBgn0031068 Alr "Augmenter of liver regeneration" [Drosophila melanogaster (taxid:7227)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 64/121 (52%), Positives = 78/121 (64%)

Query:    10 VDSTQQHSP-SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPC 68
             V++ +   P  +CPLDK +LG  TWG LHT+AA+Y D P+  +++DM TFF +LS+ YPC
Sbjct:   139 VNAAEDPLPRDDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRLYPC 198

Query:    69 EVCATDLAEQLKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDG 128
             E CA D    L V P                HN VN+KLGKPLFDCTKVNERWRDGW DG
Sbjct:   199 EFCAKDFRTDLDVNPINVNSQKELALWLCKFHNRVNDKLGKPLFDCTKVNERWRDGWLDG 258

Query:   129 S 129
             S
Sbjct:   259 S 259

GO:0016971 "flavin-linked sulfhydryl oxidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042246 "tissue regeneration" evidence=IEP;IMP

RGD|61845 Gfer "growth factor, augmenter of liver regeneration" [Rattus norvegicus (taxid:10116)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 58/110 (52%), Positives = 77/110 (70%)

Query:    20 NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
             +CP D+++LG++TW FLHT+AAYYPD P+ +QQ+DM+ F  + SKFYPCE CA D+ +++
Sbjct:    87 DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRI 146

Query:    80 KVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
                 P T             HN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct:   147 DRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 196

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=ISO;ISS

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISO;ISS

UNIPROTKB|H3BQQ4 GFER "Growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae), isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 61/110 (55%), Positives = 76/110 (69%)

Query:    20 NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
             +CP D+++LG+H+W  LHT+AAYYPD P+ +QQ+DM+ F  L SKFYPCE CA DL ++L
Sbjct:    19 DCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRL 78

Query:    80 KVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
                 P T             HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct:    79 CRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 128

GO:0016972 "thiol oxidase activity" evidence=IEA

UNIPROTKB|P55789 GFER "FAD-linked sulfhydryl oxidase ALR" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 61/110 (55%), Positives = 76/110 (69%)

Query:    20 NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
             +CP D+++LG+H+W  LHT+AAYYPD P+ +QQ+DM+ F  L SKFYPCE CA DL ++L
Sbjct:    94 DCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRL 153

Query:    80 KVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
                 P T             HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct:   154 CRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 203

GO:0008083 "growth factor activity" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0007283 "spermatogenesis" evidence=NAS

GO:0008283 "cell proliferation" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E2QWZ7 GFER "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 58/110 (52%), Positives = 76/110 (69%)

Query:    20 NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
             +CP D+++LG+H+W  LHT+AAYYPD P+ +QQ+DM+ F  L SKFYPCE CA D+ +++
Sbjct:   247 DCPEDREELGRHSWAVLHTLAAYYPDLPTPEQQRDMTQFIHLFSKFYPCEECAEDIRKRI 306

Query:    80 KVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
                 P T             HN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct:   307 CRNQPDTRTRACLTQWLCRLHNEVNRKLGKPDFDCSQVDERWRDGWKDGS 356

GO:0005739 "mitochondrion" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

UNIPROTKB|F1RFB9 GFER "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 61/121 (50%), Positives = 78/121 (64%)

Query:    13 TQQHSPS----NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPC 68
             TQQ   S    +CP D+++LG+H+W  LHT+AAYYPD P+ +QQ+DM+    L SKFYPC
Sbjct:    83 TQQKRDSKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQLVNLFSKFYPC 142

Query:    69 EVCATDLAEQLKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDG 128
             E CA D+  ++    P T             HN VN KLGKP FDC++V+ERWRDGW DG
Sbjct:   143 EECAEDIRRRICRNQPDTRTRAHFTQWLCRLHNEVNRKLGKPEFDCSQVDERWRDGWKDG 202

Query:   129 S 129
             S
Sbjct:   203 S 203

GO:0005739 "mitochondrion" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

UNIPROTKB|E1BF52 GFER "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 61/121 (50%), Positives = 79/121 (65%)

Query:    13 TQQHSPS----NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPC 68
             TQQ   S    +CP D+++LG+++W  LHT+AAYYPD P+ +QQ+DM+ F  L SKFYPC
Sbjct:    83 TQQKRDSKFREDCPQDREELGRNSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPC 142

Query:    69 EVCATDLAEQLKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDG 128
             E CA D+ +++    P T             HN VN KLGKP FDC+ V+ERWRDGW DG
Sbjct:   143 EECAEDIRKRIYRDQPDTRTRVSFTQWLCRLHNEVNRKLGKPDFDCSLVDERWRDGWKDG 202

Query:   129 S 129
             S
Sbjct:   203 S 203

GO:0005739 "mitochondrion" evidence=IEA

GO:0016972 "thiol oxidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P55789	ALR_HUMAN	1, ., 8, ., 3, ., 2	0.6	0.8527	0.5365	yes	N/A
P56213	ALR_MOUSE	1, ., 8, ., 3, ., 2	0.6036	0.8604	0.5606	yes	N/A
Q63042	ALR_RAT	1, ., 8, ., 3, ., 2	0.5945	0.8604	0.5606	yes	N/A
P27882	ERV1_YEAST	1, ., 8, ., 3, ., 2	0.3951	0.9612	0.6560	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.3.2	0.824
3rd Layer	1.8.3	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	129
COG5054	181	COG5054, ERV1, Mitochondrial sulfhydryl oxidase in	3e-40
pfam04777	95	pfam04777, Evr1_Alr, Erv1 / Alr family	1e-35

>gnl|CDD|227387 COG5054, ERV1, Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]

 Score =  132 bits (333), Expect = 3e-40
 Identities = 50/126 (39%), Positives = 67/126 (53%)

Query: 2   KQTGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTL 61
           K  G           S  +   D ++LG+ +W  LHTVAA YP +P+  Q+ D+ +F  L
Sbjct: 56  KNDGEGKERKPITMMSTKHDNPDVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFL 115

Query: 62  LSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERW 121
            S  YPC  C+    + L V PP  SS+ + + W C +HN VNEKLGKP FDC   NER+
Sbjct: 116 FSITYPCGECSKHFQKLLDVYPPQVSSREAATTWACEVHNKVNEKLGKPKFDCDTWNERY 175

Query: 122 RDGWSD 127
             G   
Sbjct: 176 DCGCDT 181

Length = 181

>gnl|CDD|218261 pfam04777, Evr1_Alr, Erv1 / Alr family

 Score =  117 bits (296), Expect = 1e-35
 Identities = 44/94 (46%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 31  HTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQS 90
             W  LHT+AA YPD P+ ++++ + +F    S FYPCE CA    + L   PP  SS+ 
Sbjct: 2   SLWTLLHTLAARYPDNPTPEEKEVLKSFLGSFSHFYPCEECAEHFQKILAKNPPQVSSRD 61

Query: 91  SLSQWLCWLHNGVNEKLGKPLF-DCTKVNERWRD 123
            LS WLC  HN VN +LGKPLF    KV ER+ D
Sbjct: 62  DLSLWLCEAHNEVNARLGKPLFCSDPKVKERYPD 95

Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian orthologue of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane an d it thought to operate downstream of the mitochondrial ABC transporter. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG3355|consensus	177		100.0
COG5054	181	ERV1 Mitochondrial sulfhydryl oxidase involved in	100.0
PF04777	95	Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 B	100.0
KOG1731|consensus	606		99.77
PHA03005	96	sulfhydryl oxidase; Provisional	99.15
PF04805	70	Pox_E10: E10-like protein conserved region; InterP	95.96

>KOG3355|consensus

Probab=100.00  E-value=5.4e-48  Score=289.29  Aligned_cols=113  Identities=58%  Similarity=1.146  Sum_probs=111.0

Q ss_pred             CCCCCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy513           17 SPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWL   96 (129)
Q Consensus        17 ~~~~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl   96 (129)
                      +...||++++++|||+|+|||||||+||+.||.+|+..|+.||.+|+.+|||.+|++||+++++++||+|+||+++..|+
T Consensus        62 ~~~~~~~~~eeLGRstWtllHT~aA~yP~~PT~eqk~~~~sFi~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~  141 (177)
T KOG3355|consen   62 SRKGDPPDKEELGRSTWTLLHTLAANYPDRPTPEQKDDMRSFIHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWL  141 (177)
T ss_pred             hhcCCCchHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHhhhCCCCCChhcHHHhhccCCCCCC
Q psy513           97 CWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS  129 (129)
Q Consensus        97 ~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~~~  129 (129)
                      |.+||.||++||||.|||+.|+|||++||+||+
T Consensus       142 C~vHN~VNekLgKp~fdC~~v~erw~~g~~~~~  174 (177)
T KOG3355|consen  142 CHVHNKVNEKLGKPKFDCRTVDERWRDGWKDGS  174 (177)
T ss_pred             HHHHHHHHHHcCCCCCchhHHHHHHhchhhhcC
Confidence            999999999999999999999999999999984

>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9e-44  Score=266.07  Aligned_cols=124  Identities=40%  Similarity=0.748  Sum_probs=115.9

Q ss_pred             CCCCCCccccccCCCCCCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCC
Q psy513            4 TGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRP   83 (129)
Q Consensus         4 ~~~~~~~~~~~~~~~~~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p   83 (129)
                      +|.++..----.++++.-|++++++|||+|+|||||+|+||++||++|+..++.||.+|+.+|||.+|++||++++..+|
T Consensus        58 ~~~~k~~~p~t~~~~k~d~~~~~elGRssWtllHtv~A~yP~~PT~~qr~~l~sFl~~~s~~yPCgeCs~~f~K~l~~~p  137 (181)
T COG5054          58 DGEGKERKPITMMSTKHDNPDVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYP  137 (181)
T ss_pred             cccccccCCccccccccCchHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhheeecHHHHHHHHHHHhhCC
Confidence            45555555555667788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhHHHHhhhCCCCCChhcHHHhhccCCCC
Q psy513           84 PATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSD  127 (129)
Q Consensus        84 ~~v~sr~~l~~Wl~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~  127 (129)
                      |+|+||+++..|+|++||.||+|||||.|||..+.|||.+||++
T Consensus       138 pqv~SRea~~~W~CevHN~VNekL~Kp~~dC~~~~e~~~~G~~~  181 (181)
T COG5054         138 PQVSSREAATTWACEVHNKVNEKLGKPKFDCDTWNERYDCGCDT  181 (181)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHhCCCCcccchhHHHhhccCCC
Confidence            99999999999999999999999999999999999999999985

>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins

Probab=100.00  E-value=5.6e-36  Score=205.66  Aligned_cols=94  Identities=43%  Similarity=0.908  Sum_probs=90.1

Q ss_pred             cchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhHHHHhhhCC
Q psy513           30 QHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGK  109 (129)
Q Consensus        30 ~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~rLgK  109 (129)
                      +|+|+|||++|++||+.|+.++++.+..|+.+|..+|||.+||.||.++++++|++|+||+++++|||++||.||+||||
T Consensus         1 c~~W~llH~~a~~~p~~p~~~~~~~~~~~~~~~~~~~pC~~C~~hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k   80 (95)
T PF04777_consen    1 CGLWTLLHTLAAYYPENPTEEEKQVMEAFFRSFPHFFPCEECRNHFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGK   80 (95)
T ss_dssp             HHHHHHHHHHHHTSHSSHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CchHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-ChhcHHHhhcc
Q psy513          110 PLF-DCTKVNERWRD  123 (129)
Q Consensus       110 p~~-~c~~~~~rw~~  123 (129)
                      |++ ++..+.++|.+
T Consensus        81 ~~~~~~~~~~~~~~~   95 (95)
T PF04777_consen   81 PIFCDDPKFKEQWPT   95 (95)
T ss_dssp             STTTSGTTHHHHHT-
T ss_pred             CCCCCcHHHHhHcCC
Confidence            996 88899999964

Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....

>KOG1731|consensus

Probab=99.77  E-value=3.8e-19  Score=153.59  Aligned_cols=90  Identities=19%  Similarity=0.354  Sum_probs=73.1

Q ss_pred             CCCCCCCCcccccc---chhHHHHHHhhhCCCCCCHHH----HHHHHHHHHHhhhhcCChhHHHHHHHHHHhCC-CCCCC
Q psy513           17 SPSNCPLDKDQLGQ---HTWGFLHTVAAYYPDKPSSDQ----QKDMSTFFTLLSKFYPCEVCATDLAEQLKVRP-PATSS   88 (129)
Q Consensus        17 ~~~~cp~~~~~lG~---a~W~llHtlaa~~p~~Pt~~~----~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p-~~v~s   88 (129)
                      ..-+|-.++..+++   ++|+|||++|++.-..+...+    ...+..|++   +||.|.+||.||++|..+.. ..|.+
T Consensus       394 ~w~gC~GS~P~~RGftCgLWTLFH~lTV~Aa~~~~~~~~~~~l~~l~~~vk---~FFgC~dC~~HF~~Ma~~~~~~~V~~  470 (606)
T KOG1731|consen  394 TWVGCAGSKPHLRGFTCGLWTLFHALTVEAAKQEVHFAFTPILDVLHGFVK---NFFGCTDCREHFQKMATRRKLHRVRR  470 (606)
T ss_pred             eeEeecCCCCccCCcchHHHHHHHHhhhhhcccccccchhccchhhHHHHH---HccCchHHHHHHHHHHHhhcccccCC
Confidence            44678888888776   999999999998655543322    334445776   57999999999999997654 78999


Q ss_pred             HHHHHHHHHHHhHHHHhhhCC
Q psy513           89 QSSLSQWLCWLHNGVNEKLGK  109 (129)
Q Consensus        89 r~~l~~Wl~~~HN~VN~rLgK  109 (129)
                      +++.++|||++||.||+||++
T Consensus       471 ped~vLWLW~aHN~VN~RLaG  491 (606)
T KOG1731|consen  471 PEDVVLWLWSAHNEVNARLAG  491 (606)
T ss_pred             hhhhhhHHHHHhhHHHHHhcc
Confidence            999999999999999999974

>PHA03005 sulfhydryl oxidase; Provisional

Probab=99.15  E-value=1.3e-10  Score=79.92  Aligned_cols=77  Identities=13%  Similarity=0.230  Sum_probs=61.4

Q ss_pred             CccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhHH
Q psy513           24 DKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLC-WLHNG  102 (129)
Q Consensus        24 ~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~-~~HN~  102 (129)
                      +|..||||.|+.+|.++.+|+..++   .+..+..+.++...+||..|+.|..+.+.++-..-++.-..+.++. .++|.
T Consensus         2 dPk~WGra~W~vIFivi~k~~~~~~---iE~cK~~lytI~~tLPC~~Cr~HA~~ai~knnimSs~diNyi~~FfI~l~Nn   78 (96)
T PHA03005          2 NPKYWGRAIWTVIFIVISKAKLDGN---IEACKRKLYTICSTLPCPACRRHAKEAIEKNNIMSSNDLNYIYFFFISLFNN   78 (96)
T ss_pred             CcchhhhhHHHHHHHHHHhccCCCc---HHHHHHHHHHhhhcCCCHHHHHHHHHHHhhcCccccCCccchhHHHHHHHHH
Confidence            6789999999999999999998874   4567777788889999999999999999887755444445554444 77775


Q ss_pred             H
Q psy513          103 V  103 (129)
Q Consensus       103 V  103 (129)
                      .
T Consensus        79 l   79 (96)
T PHA03005         79 L   79 (96)
T ss_pred             h
Confidence            4

>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses

Probab=95.96  E-value=0.022  Score=37.24  Aligned_cols=49  Identities=14%  Similarity=0.244  Sum_probs=32.6

Q ss_pred             HHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhHHH
Q psy513           55 MSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLC-WLHNGV  103 (129)
Q Consensus        55 ~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~-~~HN~V  103 (129)
                      .+.=+..+-..+||..||.|..+.+.++-..-++--..+.++. .++|..
T Consensus         5 cKr~ly~I~~tLPC~~Cr~HA~~ai~kNNiMSs~DiNyIy~FFI~lfNnl   54 (70)
T PF04805_consen    5 CKRKLYTICSTLPCPECRIHAKEAIQKNNIMSSNDINYIYFFFISLFNNL   54 (70)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHhcCccccCCccchHHHHHHHHHHh
Confidence            3444445567899999999999999887755444444444443 676643

; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
3o55_A	125	Crystal Structure Of Human Fad-Linked Augmenter Of		5e-33
3mbg_A	139	Crystal Structure Of Human Augmenter Of Liver Regen		5e-33
3r7c_A	139	The Structure Of A Hexahestidine-Tagged Form Of Aug		6e-33
1oqc_A	125	The Crystal Structure Of Augmenter Of Liver Regener		6e-33
3tk0_A	126	Mutation Of Sfalr Length = 126		5e-32
3u2l_A	115	Crystal Structure Of Human Alr Mutant C142s Length		8e-32
3u2m_A	115	Crystal Structure Of Human Alr Mutant C142145S Leng		1e-30
3u5s_A	126	Selenium Substituted Human Augmenter Of Liver Regen		3e-28
2hj3_A	125	Structure Of The Arabidopsis Thaliana Erv1 Thiol Ox		5e-20
4e0h_A	106	Crystal Structure Of Fad Binding Domain Of Erv1 Fro		6e-20
4e0i_A	189	Crystal Structure Of The C30s/c133s Mutant Of Erv1		5e-19
1jr8_A	117	Crystal Structure Of Erv2p Length = 117		3e-13

>pdb|3O55|A Chain A, Crystal Structure Of Human Fad-Linked Augmenter Of Liver Regeneration (Alr) Length = 125

Iteration: 1
 Score =  135 bits (341), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 76/111 (68%)
Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
            +CP D+++LG+H+W  LHT+AAYYPD P+ +QQ+DM+ F  L SKFYPCE CA DL ++
Sbjct: 13  EDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKR 72
Query: 79  LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           L    P T             HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 73  LARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 123

>pdb|3MBG|A Chain A, Crystal Structure Of Human Augmenter Of Liver Regeneration (Alr) Length = 139

Iteration: 1
 Score =  135 bits (341), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 61/111 (54%), Positives = 76/111 (68%)
Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
            +CP D+++LG+H+W  LHT+AAYYPD P+ +QQ+DM+ F  L SKFYPCE CA DL ++
Sbjct: 27  EDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKR 86
Query: 79  LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           L    P T             HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 87  LARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 137

>pdb|3R7C|A Chain A, The Structure Of A Hexahestidine-Tagged Form Of Augmenter Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6) Cluster That Aids In Crystal Packing Length = 139

Iteration: 1
 Score =  135 bits (340), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 77/110 (70%)
Query: 20  NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
           +CP D+++LG++TW FLHT+AAYYPD P+ +QQ+DM+ F  + SKFYPCE CA D+ +++
Sbjct: 28  DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRI 87
Query: 80  KVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
               P T             HN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 88  DRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 137

>pdb|1OQC|A Chain A, The Crystal Structure Of Augmenter Of Liver Regeneration: A Mammalian Fad Dependent Sulfhydryl Oxidase Length = 125

Iteration: 1
 Score =  135 bits (340), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 77/111 (69%)
Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
            +CP D+++LG++TW FLHT+AAYYPD P+ +QQ+DM+ F  + SKFYPCE CA D+ ++
Sbjct: 13  EDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKR 72
Query: 79  LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           +    P T             HN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 73  IDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 123

>pdb|3TK0|A Chain A, Mutation Of Sfalr Length = 126

Iteration: 1
 Score =  132 bits (332), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 75/111 (67%)
Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
            +CP D+++LG+H+W  LHT+AAYYPD P+ +QQ+DM+ F  L SKFYP E CA DL ++
Sbjct: 14  EDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLRKR 73
Query: 79  LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           L    P T             HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 74  LARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 124

>pdb|3U2L|A Chain A, Crystal Structure Of Human Alr Mutant C142s Length = 115

Iteration: 1
 Score =  131 bits (330), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 75/111 (67%)
Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
            +CP D+++LG+H+W  LHT+AAYYPD P+ +QQ+DM+ F  L SKFYP E CA DL ++
Sbjct: 3   EDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLRKR 62
Query: 79  LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           L    P T             HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 63  LARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 113

>pdb|3U2M|A Chain A, Crystal Structure Of Human Alr Mutant C142145S Length = 115

Iteration: 1
 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 74/111 (66%)
Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
            +CP D+++LG+H+W  LHT+AAYYPD P+ +QQ+DM+ F  L SKFYP E  A DL ++
Sbjct: 3   EDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEESAEDLRKR 62
Query: 79  LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           L    P T             HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 63  LARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 113

>pdb|3U5S|A Chain A, Selenium Substituted Human Augmenter Of Liver Regeneration Length = 126

Iteration: 1
 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 72/111 (64%)
Query: 19  SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
            + P D+++LG+H+W  LHT+AAYYPD P+ +QQ+D + F  L SKFYP E  A DL ++
Sbjct: 14  EDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDXAQFIHLFSKFYPXEEXAEDLRKR 73
Query: 79  LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           L    P T             HN VN KLGKP FD +KV+ERWRDGW DGS
Sbjct: 74  LARNHPDTRTRAAFTQWLXHLHNEVNRKLGKPDFDXSKVDERWRDGWKDGS 124

>pdb|2HJ3|A Chain A, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase Length = 125

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 56/100 (56%)
Query: 22  PLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKV 81
           P+ K+ LG+ TW FLHT+AA YP+KP+  Q+KD+    T+LS+ YPC  CA    E L+ 
Sbjct: 7   PVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRS 66
Query: 82  RPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERW 121
            P                HN VN  LGK +F C +V+ RW
Sbjct: 67  NPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARW 106

>pdb|4E0H|A Chain A, Crystal Structure Of Fad Binding Domain Of Erv1 From Saccharomyces Cerevisiae Length = 106

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 57/105 (54%)
Query: 23  LDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVR 82
           +D +QLG+ +W  LH+VAA YP +P+  Q+ +M  F  + S  YPC  CA D  + ++  
Sbjct: 2   MDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIREN 61
Query: 83  PPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSD 127
            P               HN VN+KL KP FDC    +RW+DGW +
Sbjct: 62  APQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 106

>pdb|4E0I|A Chain A, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From Saccharomyces Cerevisiae Length = 189

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 62/124 (50%)
Query: 4   TGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLS 63
           TG AS +    +      P D +QLG+ +W  LH+VAA YP +P+  Q+ +M  F  + S
Sbjct: 66  TGEASELMPGSRTYRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFS 125
Query: 64  KFYPCEVCATDLAEQLKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRD 123
             YPC   A D  + ++   P               HN VN+KL KP FDC    +RW+D
Sbjct: 126 HIYPCNWSAKDFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKD 185
Query: 124 GWSD 127
           GW +
Sbjct: 186 GWDE 189

>pdb|1JR8|A Chain A, Crystal Structure Of Erv2p Length = 117

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%)
Query: 25  KDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPP 84
           K ++G+ +W + HT+ A +PD+P+ ++++ + TF  L ++ YPC  C+    + ++  P 
Sbjct: 8   KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 67
Query: 85  ATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSD 127
            T             HN VNE L K ++DC  + E +  G SD
Sbjct: 68  QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSD 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
3mbg_A	139	FAD-linked sulfhydryl oxidase ALR; flavin, flavopr	8e-43
1oqc_A	125	ALR, augmenter of liver regeneration; sulfhydryl o	3e-42
1jr8_A	117	ERV2 protein, mitochondrial; FAD, sulfhydryl oxida	8e-41
2hj3_A	125	Sulfhydryl oxidase ERV1P; four-helix bundle, flavi	2e-36
3gwl_A	106	P14, FAD-linked sulfhydryl oxidase; homodimer, fiv	5e-31
3gwn_A	114	Probable FAD-linked sulfhydryl oxidase R596; five	1e-26
3llk_A	261	Sulfhydryl oxidase 1; disulfide, flavin adenine di	3e-20

>3mbg_A FAD-linked sulfhydryl oxidase ALR; flavin, flavoprotein, GFER; HET: FAD; 1.85A {Homo sapiens} PDB: 3r7c_A* Length = 139

 Score =  136 bits (344), Expect = 8e-43
 Identities = 67/125 (53%), Positives = 87/125 (69%)

Query: 5   GSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSK 64
            S             +CP D+++LG+H+W  LHT+AAYYPD P+ +QQ+DM+ F  L SK
Sbjct: 13  ASMRTQQKRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSK 72

Query: 65  FYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDG 124
           FYPCE CA DL ++L    P T ++++ +QWLC LHN VN KLGKP FDC+KV+ERWRDG
Sbjct: 73  FYPCEECAEDLRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDG 132

Query: 125 WSDGS 129
           W DGS
Sbjct: 133 WKDGS 137

>1oqc_A ALR, augmenter of liver regeneration; sulfhydryl oxidase, helix-turn-HELI oxidoreductase; HET: FAD; 1.80A {Rattus norvegicus} SCOP: a.24.15.1 PDB: 3o55_A* Length = 125

 Score =  134 bits (339), Expect = 3e-42
 Identities = 66/113 (58%), Positives = 87/113 (76%)

Query: 17  SPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLA 76
              +CP D+++LG++TW FLHT+AAYYPD P+ +QQ+DM+ F  + SKFYPCE CA D+ 
Sbjct: 11  FREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIR 70

Query: 77  EQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
           +++    P TS++ S SQWLC LHN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 71  KRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 123

>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A* Length = 117

 Score =  130 bits (329), Expect = 8e-41
 Identities = 35/108 (32%), Positives = 64/108 (59%)

Query: 22  PLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKV 81
              K ++G+ +W + HT+ A +PD+P+ ++++ + TF  L ++ YPC  C+    + ++ 
Sbjct: 5   DKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEK 64

Query: 82  RPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
            P  TSS+++ + W C +HN VNE L K ++DC  + E +  G SD  
Sbjct: 65  YPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSDSD 112

>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} Length = 125

 Score =  119 bits (300), Expect = 2e-36
 Identities = 51/114 (44%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 17  SPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLA 76
           S    P+ K+ LG+ TW FLHT+AA YP+KP+  Q+KD+    T+LS+ YPC  CA    
Sbjct: 2   SHMTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFK 61

Query: 77  EQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERW-RDGWSDGS 129
           E L+  P    SQ   SQWLC +HN VN  LGK +F C +V+ RW +      S
Sbjct: 62  EILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARWGKLECEQKS 115

>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V} Length = 106

 Score =  105 bits (263), Expect = 5e-31
 Identities = 20/96 (20%), Positives = 34/96 (35%)

Query: 29  GQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSS 88
           G   W  LH  A ++ D PS  ++ +   +     +  PC  C       L   P   ++
Sbjct: 8   GPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNN 67

Query: 89  QSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDG 124
                 W    HN VN +L K +   ++    +   
Sbjct: 68  SEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQS 103

>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus} Length = 114

 Score = 95.2 bits (236), Expect = 1e-26
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 23  LDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLK-- 80
           L     G   W F H V   YP  P+SD ++    +F  L    PC +C     + +   
Sbjct: 4   LITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTG 63

Query: 81  ---VRPPATSSQSSLSQWLCWLHNGVNEKLGKP-LFDCTKVNERWR 122
              +      ++ +L++W   +HN VN KL          V  ++ 
Sbjct: 64  KTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYE 109

>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A* Length = 261

 Score = 82.1 bits (202), Expect = 3e-20
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 32  TWGFLHTVAAYYPDKPSSDQQKD------MSTFFTLLSKFYPCEVCATDLAEQLKVRPPA 85
            W   H +      +     Q+       +      +  F+ C  CA+   +        
Sbjct: 122 LWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHR 181

Query: 86  TSSQSSLSQWLCWLHNGVNEKL-GKPLFDCTKVNERW 121
             S ++   WL   HN VN +L G P  D      +W
Sbjct: 182 VGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQW 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3u5s_A	126	FAD-linked sulfhydryl oxidase ALR; flavin, liver,	100.0
2hj3_A	125	Sulfhydryl oxidase ERV1P; four-helix bundle, flavi	100.0
1jr8_A	117	ERV2 protein, mitochondrial; FAD, sulfhydryl oxida	100.0
4e0i_A	189	Mitochondrial FAD-linked sulfhydryl oxidase ERV1;	100.0
4e0h_A	106	Mitochondrial FAD-linked sulfhydryl oxidase ERV1;	100.0
3gwl_A	106	P14, FAD-linked sulfhydryl oxidase; homodimer, fiv	100.0
3gwn_A	114	Probable FAD-linked sulfhydryl oxidase R596; five	100.0
3td7_A	295	FAD-linked sulfhydryl oxidase R596; four helix-bun	99.97
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.93
3llk_A	261	Sulfhydryl oxidase 1; disulfide, flavin adenine di	99.92
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.89

>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*

Probab=100.00  E-value=3.6e-51  Score=294.86  Aligned_cols=113  Identities=54%  Similarity=1.027  Sum_probs=110.7

Q ss_pred             CCCCCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy513           17 SPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWL   96 (129)
Q Consensus        17 ~~~~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl   96 (129)
                      ..++||+|+++||+++|++|||||++||++|+.+++..|+.||.+|+.+|||.+|+.||.++++++|+.++||++|++||
T Consensus        12 ~~~~~P~d~~elG~atW~~LHtia~~yP~~Pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~pp~l~SR~~l~~Wl   91 (126)
T 3u5s_A           12 FREDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPXEEXAEDLRKRLARNHPDTRTRAAFTQWL   91 (126)
T ss_dssp             CCSSSCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred             ccCCCCCCHHHcCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHCccccCCHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHhhhCCCCCChhcHHHhhccCCCCCC
Q psy513           97 CWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS  129 (129)
Q Consensus        97 ~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~~~  129 (129)
                      |.+||.||+|||||+|||+.|.|||++||+||+
T Consensus        92 ~~~HN~VN~rLgKp~fd~~~~~ery~~g~~dg~  124 (126)
T 3u5s_A           92 XHLHNEVNRKLGKPDFDXSKVDERWRDGWKDGS  124 (126)
T ss_dssp             HHHHHHHHHHTTCCCCCGGGHHHHHTTCCTTST
T ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHccCCCCCC
Confidence            999999999999999999999999999999996

>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-49  Score=286.67  Aligned_cols=113  Identities=45%  Similarity=0.884  Sum_probs=100.5

Q ss_pred             CCCCCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy513           17 SPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWL   96 (129)
Q Consensus        17 ~~~~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl   96 (129)
                      ++.+||+++++||+++|+||||||++||++|+.++++.++.||.+|.+||||.+|+.||.++++++|++|+||+++++||
T Consensus         2 ~~~~~p~~~~~lG~slW~llHtlaa~yp~~pt~~~~~~~~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWL   81 (125)
T 2hj3_A            2 SHMTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWL   81 (125)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred             CCCCCCCCccccCcchhHHHHHHHhhCcCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHhhhCCCCCChhcHHHhhccCCCC-CC
Q psy513           97 CWLHNGVNEKLGKPLFDCTKVNERWRDGWSD-GS  129 (129)
Q Consensus        97 ~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~-~~  129 (129)
                      |++||.||+|||||+|+|+.|.|||++||+| |+
T Consensus        82 w~~HN~VN~rL~Kp~f~c~~~~~rw~~g~~d~~~  115 (125)
T 2hj3_A           82 CHVHNTVNRSLGKLVFPCERVDARWGKLECEQKS  115 (125)
T ss_dssp             HHHHHHHHHHTTCCCCCTTSHHHHCC--------
T ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHhccCCCCCCC
Confidence            9999999999999999999999999999999 85

>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*

Probab=100.00  E-value=6e-49  Score=280.14  Aligned_cols=109  Identities=32%  Similarity=0.716  Sum_probs=104.3

Q ss_pred             CCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy513           20 NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWL   99 (129)
Q Consensus        20 ~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~~~   99 (129)
                      +||+++++||+|+|+||||||++||++|+.++++.++.|+.+|.+||||.+|+.||.++++++|++|+||+++++|||++
T Consensus         3 ~~~~~~~~lG~s~W~llHtlaa~~p~~pt~~~~~~l~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWLw~~   82 (117)
T 1jr8_A            3 GDDKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHI   82 (117)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHH
T ss_pred             CCCcchhhccccHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhCCCCCChhcHHHhhccCCCCC
Q psy513          100 HNGVNEKLGKPLFDCTKVNERWRDGWSDG  128 (129)
Q Consensus       100 HN~VN~rLgKp~~~c~~~~~rw~~g~~~~  128 (129)
                      ||.||+|||||+|||+.|.|||++||+||
T Consensus        83 HN~VN~rL~kp~f~c~~~~er~~~g~~~~  111 (117)
T 1jr8_A           83 HNKVNEYLKKDIYDCATILEDYDCGCSDS  111 (117)
T ss_dssp             HHHHHHHTTCCCCCCTTHHHHTCCCC---
T ss_pred             HHHHHHHhCCCCcCHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999997

>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-47  Score=290.60  Aligned_cols=114  Identities=39%  Similarity=0.847  Sum_probs=109.8

Q ss_pred             ccCCCCCCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHH
Q psy513           14 QQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLS   93 (129)
Q Consensus        14 ~~~~~~~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~   93 (129)
                      ....+.+||+|+++||+++|++|||||++||++|+.++++.|+.||.+|..+|||.+|+.||.++++.+|+.++||++|+
T Consensus        76 ~~~~~~~~P~d~~elGp~~W~~LHTiA~~YP~~Pt~~~k~~~~~Fi~~l~~~lPC~~C~~hf~~~lk~~pp~l~SR~~l~  155 (189)
T 4e0i_A           76 SRTYRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWSAKDFEKYIRENAPQVESREELG  155 (189)
T ss_dssp             CSSCBCCCCCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHH
T ss_pred             ccCCcCCCCCChhhcCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHCccccCCHHHHH
Confidence            34457899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHhhhCCCCCChhcHHHhhccCCCC
Q psy513           94 QWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSD  127 (129)
Q Consensus        94 ~Wl~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~  127 (129)
                      +|||++||.||+|||||+|||+.+.|||++||+|
T Consensus       156 ~Wl~~~HN~VN~rLgKp~fdc~~~~erw~~G~~d  189 (189)
T 4e0i_A          156 RWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE  189 (189)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred             HHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999997

>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-47  Score=264.54  Aligned_cols=105  Identities=42%  Similarity=0.968  Sum_probs=102.6

Q ss_pred             CCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhHH
Q psy513           23 LDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNG  102 (129)
Q Consensus        23 ~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~  102 (129)
                      .|+++|||++|++|||||++||++|+.+++..++.||.+|+.+|||.+||.||.++++++|+.++||++|++|||++||.
T Consensus         2 ~d~e~lGp~~W~~lHtia~~yP~~pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~p~~~~sr~~l~~Wl~~~HN~   81 (106)
T 4e0h_A            2 MDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENAPQVESREELGRWMCEAHNK   81 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHH
T ss_pred             CCHHHccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCChhcHHHhhccCCCC
Q psy513          103 VNEKLGKPLFDCTKVNERWRDGWSD  127 (129)
Q Consensus       103 VN~rLgKp~~~c~~~~~rw~~g~~~  127 (129)
                      ||+|||||+|||+.+.+||++||+|
T Consensus        82 VN~rLgKp~f~~~~~~~ry~~g~~d  106 (106)
T 4e0h_A           82 VNKKLRKPKFDCNFWEKRWKDGWDE  106 (106)
T ss_dssp             HHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred             HHHHcCCCCCCHHHHHHHHHhcCCC
Confidence            9999999999999999999999997

>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}

Probab=100.00  E-value=8.4e-43  Score=244.55  Aligned_cols=98  Identities=20%  Similarity=0.427  Sum_probs=95.7

Q ss_pred             cccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhHHHHh
Q psy513           26 DQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNE  105 (129)
Q Consensus        26 ~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~  105 (129)
                      .+|||++|++|||||++||++||.+++..++.||..|..+|||.+|+.||+++++++|+++.+++++++|||++||.||+
T Consensus         5 ~~~Gra~W~llHt~aa~yP~~Pt~~~~~~~~~~i~~f~~~yPC~~Ca~hf~~~~~~~p~~~~s~~~~~lWlc~~HN~VN~   84 (106)
T 3gwl_A            5 LHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNN   84 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHhHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCChhcHHHhhcc
Q psy513          106 KLGKPLFDCTKVNERWRD  123 (129)
Q Consensus       106 rLgKp~~~c~~~~~rw~~  123 (129)
                      |||||+|||+++.|||+-
T Consensus        85 rLgKp~fdc~~~~e~y~~  102 (106)
T 3gwl_A           85 RLNKKIISWSEYKNIYEQ  102 (106)
T ss_dssp             HTTCCCCCHHHHHHHHTT
T ss_pred             hhCCCCCCHHHHHHHHHH
Confidence            999999999999999985

>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}

Probab=100.00  E-value=9.9e-43  Score=246.90  Aligned_cols=102  Identities=25%  Similarity=0.516  Sum_probs=98.3

Q ss_pred             CCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCC----CC-CCCHHHHHHHH
Q psy513           22 PLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRP----PA-TSSQSSLSQWL   96 (129)
Q Consensus        22 p~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p----~~-v~sr~~l~~Wl   96 (129)
                      +.++++|||++|+||||||++||++|+.+++++|+.||.+|+++|||.+|+.||.++++++|    ++ |+||+++++||
T Consensus         3 g~~p~~~Grs~W~llHt~aa~~p~~pt~~~~~~~~~fi~~~~~~yPC~~Ca~hf~~~~~~~p~~~~~~~v~sr~~~~~Wl   82 (114)
T 3gwn_A            3 GLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWF   82 (114)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHTTSGGGCCCGGGGSSHHHHHHHH
T ss_pred             CCchhhhcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCccccCCHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999    88 99999999999


Q ss_pred             HHHhHHHHhhhCCCC-CChhcHHHhhcc
Q psy513           97 CWLHNGVNEKLGKPL-FDCTKVNERWRD  123 (129)
Q Consensus        97 ~~~HN~VN~rLgKp~-~~c~~~~~rw~~  123 (129)
                      |++||.||+|||||+ ++|++|.|||+.
T Consensus        83 c~~HN~VN~rLgKp~~~~~~~v~ery~~  110 (114)
T 3gwn_A           83 YDVHNAVNNKLEVDYGLSYEDVVNKYES  110 (114)
T ss_dssp             HHHHHHHHHHTTCCCCCCHHHHHHHHHT
T ss_pred             HHHHhHHHHHhCCCCcCCHHHHHHHHHH
Confidence            999999999999996 789999999974

>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}

Probab=99.97  E-value=2.6e-32  Score=218.45  Aligned_cols=105  Identities=26%  Similarity=0.518  Sum_probs=94.6

Q ss_pred             CCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCC-----CCCCHHHHHHHHH
Q psy513           23 LDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPP-----ATSSQSSLSQWLC   97 (129)
Q Consensus        23 ~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~-----~v~sr~~l~~Wl~   97 (129)
                      .....|||++|++|||||++||++|+.++++.++.||.+|+.+|||.+|+.||.++++++|+     .++||++|+.|+|
T Consensus        38 M~TkVWGPstW~fLHTIAa~YPenPT~~dKk~y~~FI~nL~~vLPC~~Cr~HF~k~Lkk~Pv~~~~p~L~SRdsLskWL~  117 (295)
T 3td7_A           38 LITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWFY  117 (295)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHTTSGGGCCCTTGGGSHHHHHHHHH
T ss_pred             CccCcCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999998773     4799999999999


Q ss_pred             HHhHHHHhhhCCCC-CChhcH---HHhhccCCCC
Q psy513           98 WLHNGVNEKLGKPL-FDCTKV---NERWRDGWSD  127 (129)
Q Consensus        98 ~~HN~VN~rLgKp~-~~c~~~---~~rw~~g~~~  127 (129)
                      ++||.||++||||. +.++++   .|.|+++|.+
T Consensus       118 ~iHN~VNkrLGKP~~lSYedv~kkYE~yrakC~k  151 (295)
T 3td7_A          118 DVHNAVNNKLEVDYGLSYEDVVNKYESFRAKCGK  151 (295)
T ss_dssp             HHHHHHHHHHTCCCCCCHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHhccCCCC
Confidence            99999999999996 666554   5666788765

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.93  E-value=4.4e-27  Score=200.74  Aligned_cols=104  Identities=18%  Similarity=0.286  Sum_probs=88.0

Q ss_pred             ccCCCCCCCCCcccccc---chhHHHHHHhhhCCCCCCH------HHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCC
Q psy513           14 QQHSPSNCPLDKDQLGQ---HTWGFLHTVAAYYPDKPSS------DQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPP   84 (129)
Q Consensus        14 ~~~~~~~cp~~~~~lG~---a~W~llHtlaa~~p~~Pt~------~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~   84 (129)
                      ....-.+|-.+...+++   ++|+|||||||+||++|+.      +++..+..|...+..||||.+|+.||.++++++++
T Consensus       358 ~~~~w~~C~gs~~~~rg~~C~lW~l~Htltv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ff~C~~Ca~hF~~~~~~~~~  437 (519)
T 3t58_A          358 EKVNWVGCQGSEPHFRGFPCSLWVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMH  437 (519)
T ss_dssp             SSCCCSTTBCSSTTSBSHHHHHHHHHHHHHHHHHHHHHTSTTSCCCSCHHHHHHHHHHHHHCSBHHHHHHHHHHHHHHGG
T ss_pred             CCCCcccCCCCCcccCCcCcHHHHHHHHHHccCccCCccccccccchHHHHHHHHHHHHHCCCchHHHHHHHHHHhhCCC
Confidence            34456899999888776   9999999999999998754      45566666666677889999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhHHHHhhh-----CCCCCChhcH
Q psy513           85 ATSSQSSLSQWLCWLHNGVNEKL-----GKPLFDCTKV  117 (129)
Q Consensus        85 ~v~sr~~l~~Wl~~~HN~VN~rL-----gKp~~~c~~~  117 (129)
                      +|+||+++++|||++||.||+||     ++|.|++..+
T Consensus       438 ~v~s~~~~~~Wlw~~HN~VN~rL~~~~~~dp~f~k~q~  475 (519)
T 3t58_A          438 QVRSPSNAILWLWTSHNRVNARLSGALSEDPHFPKVQW  475 (519)
T ss_dssp             GCCSHHHHHHHHHHHHHHHHHHHTTCTTCCTTSCCCSS
T ss_pred             cCCCHHHHHHHHHHhhCHHHhhcCCCCCCCCCCCccCC
Confidence            99999999999999999999999     4566665544

>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*

Probab=99.92  E-value=3.8e-25  Score=175.69  Aligned_cols=101  Identities=17%  Similarity=0.338  Sum_probs=83.3

Q ss_pred             ccCCCCCCCCCcccccc---chhHHHHHHhhhCCCCCCH---------HHHHHHHHHHHHhhhhcCChhHHHHHHHHHHh
Q psy513           14 QQHSPSNCPLDKDQLGQ---HTWGFLHTVAAYYPDKPSS---------DQQKDMSTFFTLLSKFYPCEVCATDLAEQLKV   81 (129)
Q Consensus        14 ~~~~~~~cp~~~~~lG~---a~W~llHtlaa~~p~~Pt~---------~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~   81 (129)
                      +...-.+|-.+...+++   ++|+|||+||+++++.|..         +..++|+.||..   ||||.+|+.||++++++
T Consensus       101 ~~~~WvgC~GS~p~~RGy~CgLW~LFH~LTV~a~~~~~~~~~~~~~~~~vl~ai~~fv~~---FypC~~Ca~hF~~~~~~  177 (261)
T 3llk_A          101 KKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHY---FFGCRDCASHFEQMAAA  177 (261)
T ss_dssp             SSCCCSTTCCSSTTSSSHHHHHHHHHHHHHHHHHCC---------CGGGHHHHHHHHHHH---HCSCHHHHHHHHHHHHH
T ss_pred             CCCcccccCCCCCccCCcCcHHHHHHHHHHhhhhcccccccccccCHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhh
Confidence            34466899999888776   9999999999998876532         345677788775   59999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhHHHHhhhC-----CCCCChhcH
Q psy513           82 RPPATSSQSSLSQWLCWLHNGVNEKLG-----KPLFDCTKV  117 (129)
Q Consensus        82 ~p~~v~sr~~l~~Wl~~~HN~VN~rLg-----Kp~~~c~~~  117 (129)
                      +|++|+|++++++|||++||.||+||+     .|.|++..+
T Consensus       178 ~~~~v~sr~~~~lWLw~~HN~VN~rLag~~seDP~fpK~qw  218 (261)
T 3llk_A          178 SMHRVGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQW  218 (261)
T ss_dssp             HGGGCCSHHHHHHHHHHHHHHHHHHHTTCTTSCTTSCCCSS
T ss_pred             CCCccCCHHHHHHHHHHhcCHHhhhcCCCCCCCCCCCccCC
Confidence            999999999999999999999999994     466665544

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.89  E-value=1.9e-24  Score=183.32  Aligned_cols=93  Identities=19%  Similarity=0.323  Sum_probs=77.2

Q ss_pred             CCCCCCCCcccccc---chhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHH
Q psy513           17 SPSNCPLDKDQLGQ---HTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLS   93 (129)
Q Consensus        17 ~~~~cp~~~~~lG~---a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~   93 (129)
                      .-.+|-.+...+++   ++|+||||||++||+     ++..+..|+..|.+||||.+|+.||.+++      ++++++++
T Consensus       286 ~w~~C~gs~~~~rg~~CslW~l~Htlt~~~~~-----~~~~~~~~~~~~~~ffpC~~Ca~hF~~~~------~~s~~~~~  354 (470)
T 3qcp_A          286 RWRTCRGSSPQYRGFPCGMWLLLHALTVNTPA-----DRNVLEVIQNYIRYFFSCKECRDHFIQFN------FSPNEDPV  354 (470)
T ss_dssp             CCSTTCCSSTTSSSHHHHHHHHHHHHHHHCCT-----TCCHHHHHHHHHHHHCSCHHHHHHHTTCC------CCSSSCHH
T ss_pred             cccccCCCCCccCCcCchHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHccCcHHHHHHHHHHh------ccCHHHHH
Confidence            35679888887776   999999999999998     24556666666667899999999999865      78999999


Q ss_pred             HHHHHHhHHHHhhhCC------CCCChhcHHHh
Q psy513           94 QWLCWLHNGVNEKLGK------PLFDCTKVNER  120 (129)
Q Consensus        94 ~Wl~~~HN~VN~rLgK------p~~~c~~~~~r  120 (129)
                      +|||++||.||+||+|      |.|+|..+.-.
T Consensus       355 lWlw~~HN~VN~rL~~~~~~~dp~fpk~~~P~~  387 (470)
T 3qcp_A          355 LQLWRAHNNVNARLANVKDGADPLVPKRQFPTL  387 (470)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTSCTTSCCCCSSCT
T ss_pred             HHHHHHhCHHHHhcCCCCCCCCCCCCccCCCCc
Confidence            9999999999999997      66777655433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1oqca_	112	a.24.15.1 (A:) Augmenter of liver regeneration {Ra	3e-41
d1jr8a_	105	a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast	8e-38

>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Augmenter of liver regeneration
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  130 bits (329), Expect = 3e-41
 Identities = 66/110 (60%), Positives = 87/110 (79%)

Query: 20  NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
           +CP D+++LG++TW FLHT+AAYYPD P+ +QQ+DM+ F  + SKFYPCE CA D+ +++
Sbjct: 2   DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRI 61

Query: 80  KVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
               P TS++ S SQWLC LHN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 62  DRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 111

>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 105

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Thiol oxidase Erv2p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  121 bits (305), Expect = 8e-38
 Identities = 33/100 (33%), Positives = 62/100 (62%)

Query: 25  KDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPP 84
           K ++G+ +W + HT+ A +PD+P+ ++++ + TF  L ++ YPC  C+    + ++  P 
Sbjct: 5   KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 64

Query: 85  ATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDG 124
            TSS+++ + W C +HN VNE L K ++DC  + E +  G
Sbjct: 65  QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCG 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1oqca_	112	Augmenter of liver regeneration {Rat (Rattus norve	100.0
d1jr8a_	105	Thiol oxidase Erv2p {Baker's yeast (Saccharomyces	100.0

>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Augmenter of liver regeneration
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.4e-45  Score=255.09  Aligned_cols=111  Identities=59%  Similarity=1.240  Sum_probs=109.0

Q ss_pred             CCCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q psy513           19 SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCW   98 (129)
Q Consensus        19 ~~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~~   98 (129)
                      .+||+++++||+++|++||++|+.||++|+.+++..+++||.+|..++||++||.||.++++++|+.+.||++|+.|+|+
T Consensus         1 ~~~p~~~~~~Gp~~W~~lH~ia~~yp~~pt~~~~~~~~~fi~~l~~~lPC~~Cr~h~~~~l~~~~~~~~sr~~l~~wl~~   80 (112)
T d1oqca_           1 EDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCR   80 (112)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHH
T ss_pred             CCCCCChHHccHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHhChhCccHHHHHHHHHHHHhcCcccCCHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHhhhCCCCCChhcHHHhhccCCCCCC
Q psy513           99 LHNGVNEKLGKPLFDCTKVNERWRDGWSDGS  129 (129)
Q Consensus        99 ~HN~VN~rLgKp~~~c~~~~~rw~~g~~~~~  129 (129)
                      +||.||+|||||+++|+++.++|++||+||+
T Consensus        81 ~HN~VN~rlgKp~~~~~~~~~~Y~~~~~~~~  111 (112)
T d1oqca_          81 LHNEVNRKLGKPDFDCSRVDERWRDGWKDGS  111 (112)
T ss_dssp             HHHHHHHHTTCCCCCGGGHHHHHTTCCTTSC
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHccCCCCC
Confidence            9999999999999999999999999999995

>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: FAD-dependent thiol oxidase
family: FAD-dependent thiol oxidase
domain: Thiol oxidase Erv2p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-42  Score=239.42  Aligned_cols=101  Identities=33%  Similarity=0.777  Sum_probs=99.5

Q ss_pred             ccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhHHHH
Q psy513           25 KDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVN  104 (129)
Q Consensus        25 ~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN  104 (129)
                      +++||+++|++|||+|+.||++|+.+++..++.||.+|..++||++|+.||.++++++|+.+.||++|+.|+|++||.||
T Consensus         5 k~e~Gp~~W~~lHtia~~yp~~pt~~~k~~~~~f~~~l~~~lPC~~C~~h~~~~l~~~p~~~~sr~~l~~wl~~~HN~VN   84 (105)
T d1jr8a_           5 KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHIHNKVN   84 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhCccccCCHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCChhcHHHhhccCC
Q psy513          105 EKLGKPLFDCTKVNERWRDGW  125 (129)
Q Consensus       105 ~rLgKp~~~c~~~~~rw~~g~  125 (129)
                      +|||||+|+|+.+.++|++||
T Consensus        85 ~~lgKp~~~~~~~~~~Y~~gc  105 (105)
T d1jr8a_          85 EYLKKDIYDCATILEDYDCGC  105 (105)
T ss_dssp             HHTTCCCCCCTTHHHHTCCCC
T ss_pred             HHcCCCCcCHHHHHHHHhcCC
Confidence            999999999999999999997