Psyllid ID: psy5178

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MCESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPMEAHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHILTC
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHccccccEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHcccHccccccEEEEEccccccccEEEEEcc
Coil and Loop (DISEMBL)
mceslrictsrlsccsqeheiSVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNaqytfddnprqlgspmeahggepqllncksdssksftirfgvknpmgstihiltc
Flexible Loop (DISEMBL)
mceslricTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPMEAHGGEPQLLNCKSDSSKSFTIrfgvknpmgstihiltc
Low Complexity Region (SEG)
MCESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPMEAHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHILTC
Disordered region (IsUnstruct)
****LRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFD******************************TIRFGV*************
Disordered Region (DISOPRED)
*CESLRICTSRLSCCSQEHEISV*********************ILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPMEAHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHILTC
Disordered Region (DISEMBL)
********TSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPMEAHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHILTC
Disordered Region (DISPRO)
*CESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPMEAHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHILTC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPMEAHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHILTC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q9Y625	555	Glypican-6 OS=Homo sapien	yes	N/A	0.698	0.275	0.339	2e-22
Q5RE54	555	Glypican-6 OS=Pongo abeli	yes	N/A	0.698	0.275	0.339	2e-22
Q9R087	555	Glypican-6 OS=Mus musculu	yes	N/A	0.698	0.275	0.339	2e-22
P51655	557	Glypican-4 OS=Mus musculu	no	N/A	0.689	0.271	0.360	5e-22
O75487	556	Glypican-4 OS=Homo sapien	no	N/A	0.689	0.271	0.354	1e-21
P50593	550	Glypican-1 OS=Gallus gall	no	N/A	0.598	0.238	0.302	7e-18
Q0V9W0	554	Glypican-1 OS=Xenopus tro	no	N/A	0.698	0.276	0.287	9e-18
Q9QZF2	557	Glypican-1 OS=Mus musculu	no	N/A	0.694	0.272	0.275	3e-14
P35053	558	Glypican-1 OS=Rattus norv	no	N/A	0.694	0.272	0.28	1e-13
G3X745	559	Glypican-1 OS=Bos taurus	no	N/A	0.694	0.271	0.262	8e-13

>sp|Q9Y625|GPC6_HUMAN Glypican-6 OS=Homo sapiens GN=GPC6 PE=1 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 21/174 (12%)

Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E  +    +  ++  + +T + + +   SR  +FD        
Sbjct: 55  EHLRICPQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRHKKFDE------- 107

Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                      FF+ELL  ++KS +DMF RTYG++Y QNS +F DLF EL++Y++ GNV+
Sbjct: 108 -----------FFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVN 156

Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           L E++++F++ L ++MF ++N QY F +       K    L     F D PR+L
Sbjct: 157 LEEMLNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKP---FGDVPRKL 207

Cell surface proteoglycan that bears heparan sulfate. Putative cell surface coreceptor for growth factors, extracellular matrix proteins, proteases and anti-proteases.
Homo sapiens (taxid: 9606)

>sp|Q5RE54|GPC6_PONAB Glypican-6 OS=Pongo abelii GN=GPC6 PE=2 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 21/174 (12%)

Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E  +    +  ++  + +T + + +   SR  +FD        
Sbjct: 55  EHLRICPQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRHKKFDE------- 107

Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                      FF+ELL  ++KS +DMF RTYG++Y QNS +F DLF EL++Y++ GNV+
Sbjct: 108 -----------FFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVN 156

Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           L E++++F++ L ++MF ++N QY F +       K    L     F D PR+L
Sbjct: 157 LEEMLNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKP---FGDVPRKL 207

Cell surface proteoglycan that bears heparan sulfate. Putative cell surface coreceptor for growth factors, extracellular matrix proteins, proteases and anti-proteases.

Pongo abelii (taxid: 9601)

>sp|Q9R087|GPC6_MOUSE Glypican-6 OS=Mus musculus GN=Gpc6 PE=1 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 21/174 (12%)

Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E  +    +  ++  + +T + + +   SR  +FD        
Sbjct: 55  EHLRICPQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRHKKFDE------- 107

Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                      FF+ELL  ++KS +DMF RTYG++Y QNS +F DLF EL++Y++ GNV+
Sbjct: 108 -----------FFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVN 156

Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           L E++++F++ L ++MF ++N QY F +       K    L     F D PR+L
Sbjct: 157 LEEMLNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKP---FGDVPRKL 207

Cell surface proteoglycan that bears heparan sulfate. Putative cell surface coreceptor for growth factors, extracellular matrix proteins, proteases and anti-proteases.

Mus musculus (taxid: 10090)

>sp|P51655|GPC4_MOUSE Glypican-4 OS=Mus musculus GN=Gpc4 PE=2 SV=2

 Score =  104 bits (259), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 21/172 (12%)

Query: 5   LRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSF 64
           L+IC    +CCSQE E       +  +   + +    L +I  SR  +FD          
Sbjct: 57  LKICPQDYTCCSQEMEEKYSLQSKDDFKTVVSEQCNHLQAIFASRYKKFDE--------- 107

Query: 65  RELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLI 124
                    FFKELL  ++KS +DMF +TYG +Y QNS LF DLF EL++Y+  GNV+L 
Sbjct: 108 ---------FFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVAGNVNLE 158

Query: 125 EVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           E++++F++ L ++MF ++N+QY F D+      K    L     F D PR+L
Sbjct: 159 EMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQLK---PFGDVPRKL 207

Cell surface proteoglycan that bears heparan sulfate. May be involved in the development of kidney tubules and of the central nervous system.

Mus musculus (taxid: 10090)

>sp|O75487|GPC4_HUMAN Glypican-4 OS=Homo sapiens GN=GPC4 PE=1 SV=4

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 92/172 (53%), Gaps = 21/172 (12%)

Query: 5   LRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSF 64
           L+IC    +CCSQE E       +  +   + +    L ++  SR  +FD          
Sbjct: 57  LKICPQGSTCCSQEMEEKYSLQSKDDFKSVVSEQCNHLQAVFASRYKKFDE--------- 107

Query: 65  RELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLI 124
                    FFKELL  ++KS +DMF +TYG +Y QNS LF DLF EL++Y+  GNV+L 
Sbjct: 108 ---------FFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVVGNVNLE 158

Query: 125 EVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           E++++F++ L ++MF ++N+QY F D+      K    L     F D PR+L
Sbjct: 159 EMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQLK---PFGDVPRKL 207

Cell surface proteoglycan that bears heparan sulfate. May be involved in the development of kidney tubules and of the central nervous system.

Homo sapiens (taxid: 9606)

>sp|P50593|GPC1_CHICK Glypican-1 OS=Gallus gallus GN=GPC1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 18/149 (12%)

Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E +  N  R  ++  +++   S+ +IL ++   FD        
Sbjct: 54  EHLRICPQGYTCCTSEMEENFANKSRSEFEAMMKEAGRSVQTILTAQYKSFD-------- 105

Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                      +F++LL+ S+K+ +D F   YG +Y QN  +F DL+ EL +Y+   N++
Sbjct: 106 ----------NYFQDLLNKSEKALYDTFPSLYGDLYTQNMKVFKDLYSELRRYYRGSNIN 155

Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDK 151
           L E ++ F++ L +++F ++NAQY   D+
Sbjct: 156 LEEALNEFWTRLLERLFKLMNAQYHITDE 184

Cell surface proteoglycan that bears heparan sulfate. Modulates Wnt-signaling pathway.

Gallus gallus (taxid: 9031)

>sp|Q0V9W0|GPC1_XENTR Glypican-1 OS=Xenopus tropicalis GN=gpc1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 21/174 (12%)

Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E +  N+ R  ++  LR++  S+  +L ++   FD+       
Sbjct: 57  EHLRICPQGYTCCTSEMEENFANISRVEFEAKLRESSASIQRLLTTQHRNFDS------- 109

Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                      +F++LL+TS++   + F   YG +Y QNS +F DL+ EL +Y+    ++
Sbjct: 110 -----------YFQDLLNTSERVLQERFPSQYGDLYSQNSKIFRDLYSELRQYYRGSGIN 158

Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           L E +  F+S L +++F   + QY+F ++      K +  L     F D PR++
Sbjct: 159 LEEALIEFWSRLLERVFKAQHTQYSFSEEYMDCLVKQYEQLKP---FGDTPREV 209

Cell surface proteoglycan that bears heparan sulfate.

Xenopus tropicalis (taxid: 8364)

>sp|Q9QZF2|GPC1_MOUSE Glypican-1 OS=Mus musculus GN=Gpc1 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 22/174 (12%)

Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E ++ N  R   +  L  +  +L + L ++ H  D        
Sbjct: 57  EHLRICPQGYTCCTSEMEENLANHSRMELESALHDSSRALQATLATQLHGID-------- 108

Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                       F+ LL+ S+++  + F   +G +Y QN+  F DL+ EL  Y+   N+ 
Sbjct: 109 ----------DHFQRLLNDSERTLQEAFPGAFGDLYTQNTRAFRDLYAELRLYYRGANLH 158

Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           L E +  F++ L +++F  L+ Q   DD +  L ++      A   F D PR+L
Sbjct: 159 LEETLAEFWARLLERLFKQLHPQLLPDDYLDCLGKQA----EALRPFGDAPREL 208

Cell surface proteoglycan that bears heparan sulfate. Binds, via the heparan sulfate side chains, alpha-4 (V) collagen and participates in Schwann cell myelination (By similarity). May act as a catalyst in increasing the rate of conversion of prion protein PRPN(C) to PRNP(Sc) via associating (via the heparan sulfate side chains) with both forms of PRPN, targeting them to lipid rafts and facilitating their interaction. Required for proper skeletal muscle differentiation by sequestering FGF2 in lipid rafts preventing its binding to receptors (FGFRs) and inhibiting the FGF-mediated signaling. Binds Cu(2+) or Zn(2+) ions.

Mus musculus (taxid: 10090)

>sp|P35053|GPC1_RAT Glypican-1 OS=Rattus norvegicus GN=Gpc1 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 23/175 (13%)

Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E ++ N  R   +  L  +  +L + L ++ H  D        
Sbjct: 57  EHLRICPQGYTCCTSEMEENLANHSRMELETALHDSSRALQATLATQLHGID-------- 108

Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                       F+ LL+ S+++  D F   +G +Y QN+  F DL+ EL  Y+   N+ 
Sbjct: 109 ----------DHFQRLLNDSERTLQDAFPGAFGDLYTQNTRAFRDLYAELRLYYRGANLH 158

Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           L E +  F++ L +++F  L+ Q    DD +  L ++      A   F D PR+L
Sbjct: 159 LEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQA----EALRPFGDAPREL 209

Cell surface proteoglycan that bears heparan sulfate. May act as a catalyst in increasing the rate of conversion of prion protein PRPN(C) to PRNP(Sc) via associating (via the heparan sulfate side chains) with both forms of PRPN, targeting them to lipid rafts and facilitating their interaction. Required for proper skeletal muscle differentiation by sequestering FGF2 in lipid rafts preventing its binding to receptors (FGFRs) and inhibiting the FGF-mediated signaling. Binds Cu(2+) or Zn(2+) ions (By similarity). Binds, via the heparan sulfate side chains, alpha-4 (V) collagen and participates in Schwann cell myelination.

Rattus norvegicus (taxid: 10116)

>sp|G3X745|GPC1_BOVIN Glypican-1 OS=Bos taurus GN=GPC1 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 23/175 (13%)

Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E ++ N  R   +  L +   +L + L ++   FD        
Sbjct: 57  EHLRICPQGYTCCTSEMEENLANRSRAELETALLEGTRALQATLAAQQRGFD-------- 108

Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                       F+ LL+ S+++  + F   +G +Y QN+  F DL+ EL  Y+   N+ 
Sbjct: 109 ----------DHFQRLLNDSERALQEAFPGAFGELYTQNAKAFRDLYAELRLYYGGANLH 158

Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           L E +  F++ L +++F  L+ Q    DD +  L ++   +      F + PR+L
Sbjct: 159 LQETLAEFWARLLERLFRQLHPQLLLPDDYLDCLGKQAEPL----RPFGEAPREL 209

Cell surface proteoglycan that bears heparan sulfate. Binds, via the heparan sulfate side chains, alpha-4 (V) collagen and participates in Schwann cell myelination (By similarity). May act as a catalyst in increasing the rate of conversion of prion protein PRPN (C) to PRNP (Sc) via associating (via the heparan sulfate side chains) with both forms of PRPN, targeting them to lipid rafts and facilitating their interaction. Required for proper skeletal muscle differentiation by sequestering FGF2 in lipid rafts preventing its binding to receptors (FGFRs) and inhibiting the FGF-mediated signaling.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
350410132	595	PREDICTED: glypican-4-like [Bombus impat	0.703	0.258	0.452	3e-34
340718871	595	PREDICTED: glypican-4-like [Bombus terre	0.703	0.258	0.452	3e-34
328781337	549	PREDICTED: glypican-4 [Apis mellifera]	0.703	0.280	0.424	2e-32
380012849	614	PREDICTED: glypican-4-like [Apis florea]	0.703	0.250	0.424	2e-32
321469952	603	hypothetical protein DAPPUDRAFT_318151 [	0.589	0.213	0.471	2e-32
347970128	741	AGAP003559-PA [Anopheles gambiae str. PE	0.543	0.160	0.489	3e-32
345491853	682	PREDICTED: glypican-4-like [Nasonia vitr	0.652	0.209	0.463	2e-31
328716329	700	PREDICTED: glypican-6-like [Acyrthosipho	0.712	0.222	0.393	2e-31
198464413	780	GA16712 [Drosophila pseudoobscura pseudo	0.584	0.164	0.473	6e-31
383864326	602	PREDICTED: glypican-4-like [Megachile ro	0.698	0.254	0.426	6e-31

>gi|350410132|ref|XP_003488957.1| PREDICTED: glypican-4-like [Bombus impatiens]

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/179 (45%), Positives = 112/179 (62%), Gaps = 25/179 (13%)

Query: 3   ESLRICTSRLS----CCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALST 58
           + L++C S  S    CCS + E+ +    R  ++K  ++TL  L  +L +R  RF     
Sbjct: 52  KELKVCGSVRSGGEVCCSADMEVRLQARARDKHEKATKETLQRLHQVLSTRGTRF----- 106

Query: 59  MCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSR 118
              HSF          FK+LL+ SKK FH+MFK+TYGI+YEQNSF+FTDLF+ELE Y+++
Sbjct: 107 ---HSF----------FKDLLANSKKVFHEMFKKTYGILYEQNSFVFTDLFKELENYYAK 153

Query: 119 GNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLG 177
           G VDL + MDNFF+TLYQKMFTVLN+QY FD+K     + +   +     F D P++LG
Sbjct: 154 GTVDLDDTMDNFFNTLYQKMFTVLNSQYNFDNK---YLECVGEHMKEIRPFGDVPQKLG 209

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718871|ref|XP_003397886.1| PREDICTED: glypican-4-like [Bombus terrestris]

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/179 (45%), Positives = 112/179 (62%), Gaps = 25/179 (13%)

Query: 3   ESLRICTSRLS----CCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALST 58
           + L++C S  S    CCS + E+ +    R  ++K  ++TL  L  +L +R  RF     
Sbjct: 52  KELKVCGSVRSGGEVCCSADMEVRLQARARDKHEKATKETLQRLHQVLSTRGTRF----- 106

Query: 59  MCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSR 118
              HSF          FK+LL+ SKK FH+MFK+TYGI+YEQNSF+FTDLF+ELE Y+++
Sbjct: 107 ---HSF----------FKDLLANSKKVFHEMFKKTYGILYEQNSFVFTDLFKELENYYAK 153

Query: 119 GNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLG 177
           G VDL + MDNFF+TLYQKMFTVLN+QY FD+K     + +   +     F D P++LG
Sbjct: 154 GTVDLDDTMDNFFNTLYQKMFTVLNSQYNFDNK---YLECVGEHMKEIRPFGDVPQKLG 209

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781337|ref|XP_624719.2| PREDICTED: glypican-4 [Apis mellifera]

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 110/179 (61%), Gaps = 25/179 (13%)

Query: 3   ESLRICTSRLS----CCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALST 58
           + L++C S  S    CCS + E+ +    R  ++K  ++TL  L  +L +R  RF     
Sbjct: 52  KELKVCGSVRSGGEVCCSADMEVRLQARARDKHEKATKETLQRLHQVLSTRGSRF----- 106

Query: 59  MCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSR 118
              HSF          FK+L + SK+ FH+MFK+TYG +YEQN+++FTDLF+ELE Y+++
Sbjct: 107 ---HSF----------FKDLFANSKRVFHEMFKKTYGTLYEQNAYVFTDLFKELENYYAK 153

Query: 119 GNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLG 177
           G VDL + MDNFF+TLYQKMFTVLN+QY FD+K     + +   +     F D P++LG
Sbjct: 154 GTVDLDDTMDNFFNTLYQKMFTVLNSQYNFDNK---YMECVGEHMKEIRPFGDAPQKLG 209

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012849|ref|XP_003690487.1| PREDICTED: glypican-4-like [Apis florea]

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 110/179 (61%), Gaps = 25/179 (13%)

Query: 3   ESLRICTSRLS----CCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALST 58
           + L++C S  S    CCS + E+ +    R  ++K  ++TL  L  +L +R  RF     
Sbjct: 52  KELKVCGSVRSGGEVCCSADMEVRLQARARDKHEKATKETLQRLHQVLSTRGSRF----- 106

Query: 59  MCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSR 118
              HSF          FK+L + SK+ FH+MFK+TYG +YEQN+++FTDLF+ELE Y+++
Sbjct: 107 ---HSF----------FKDLFANSKRVFHEMFKKTYGTLYEQNAYVFTDLFKELENYYAK 153

Query: 119 GNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLG 177
           G VDL + MDNFF+TLYQKMFTVLN+QY FD+K     + +   +     F D P++LG
Sbjct: 154 GTVDLDDTMDNFFNTLYQKMFTVLNSQYNFDNK---YMECVGEHMKEIRPFGDAPQKLG 209

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469952|gb|EFX80930.1| hypothetical protein DAPPUDRAFT_318151 [Daphnia pulex]

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 97/157 (61%), Gaps = 28/157 (17%)

Query: 5   LRICTSR----------LSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFD 54
           LR C SR           +CC++  E  +++  RQ Y+  +R    SLS+   +RA +FD
Sbjct: 8   LRFCGSRSGSAAAGSSQPTCCTEAMENRLNDASRQQYELVVRDASASLSATFTARAKKFD 67

Query: 55  ALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEK 114
                              FF+ELL  SK+ FHDMFKRTYGI+YEQNS +FTDLF +LE 
Sbjct: 68  E------------------FFRELLENSKRDFHDMFKRTYGILYEQNSEVFTDLFRDLED 109

Query: 115 YFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDK 151
           Y++RG +DL E MD+FF+ LYQ+MFTVLNAQ+ FDDK
Sbjct: 110 YYARGKLDLEEAMDHFFTALYQRMFTVLNAQFRFDDK 146

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347970128|ref|XP_313306.5| AGAP003559-PA [Anopheles gambiae str. PEST] gi|333468790|gb|EAA08936.5| AGAP003559-PA [Anopheles gambiae str. PEST]

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/141 (48%), Positives = 95/141 (67%), Gaps = 22/141 (15%)

Query: 13  SCCSQ--EHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRS 70
           +CC+Q  EH++++H   +   +++++  +  LSS+L +RA RF+                
Sbjct: 112 TCCTQMTEHKLALHT--KTMVERNIKDNISKLSSVLGTRAQRFNE--------------- 154

Query: 71  LPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNF 130
              FF+ELL  SK  FH MFKRTYG IYEQNS++F DLF ELE+Y++ G VDL E MD+F
Sbjct: 155 ---FFEELLVQSKHGFHAMFKRTYGTIYEQNSYVFADLFAELERYYAHGKVDLSETMDHF 211

Query: 131 FSTLYQKMFTVLNAQYTFDDK 151
           F+ L+QKMFTVLNAQYTFD+K
Sbjct: 212 FNILFQKMFTVLNAQYTFDNK 232

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491853|ref|XP_001607767.2| PREDICTED: glypican-4-like [Nasonia vitripennis]

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 101/164 (61%), Gaps = 21/164 (12%)

Query: 14  CCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPG 73
           CCS + EI +    R  +DK  + TL  L +IL +RA +F                    
Sbjct: 86  CCSADMEIRLQARARDKHDKATKDTLQRLQNILHTRATKFHE------------------ 127

Query: 74  FFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFST 133
           FF +LL  SKKSFH+MFK+TYGI+YEQN+++F DLF ELEKY+++G VDL +VMD FF+T
Sbjct: 128 FFNKLLKGSKKSFHEMFKKTYGILYEQNAYVFIDLFMELEKYYAKGLVDLDDVMDTFFNT 187

Query: 134 LYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLG 177
           LYQKMFTVLN+QY FD K     + +   +     F D P++LG
Sbjct: 188 LYQKMFTVLNSQYKFDSK---YLECVGHHMKEMRPFGDVPQKLG 228

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716329|ref|XP_001948900.2| PREDICTED: glypican-6-like [Acyrthosiphon pisum]

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/178 (39%), Positives = 109/178 (61%), Gaps = 22/178 (12%)

Query: 5   LRIC-TSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHS 63
           L++C  S+ +CC +  E  +  V R  YD  L+ +L +LS + K +A +FD         
Sbjct: 54  LQVCGKSQETCCHENSEPQLVTVGRNMYDDKLQTSLKTLSGMYKEKAAKFDE-------- 105

Query: 64  FRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDL 123
                     +FK++L+ ++  FHDMFK+TYG++YEQNS+LF DLF +LEKY+  GN ++
Sbjct: 106 ----------YFKDMLNKARMGFHDMFKKTYGMMYEQNSYLFQDLFRDLEKYYDAGNTNI 155

Query: 124 IEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPME 181
           +EV++NFFS L QKMFTV+N+Q+TFD K      +    ++    F D P +L +P++
Sbjct: 156 VEVLENFFSVLCQKMFTVMNSQFTFDAKYLVCVSE---SMSEVAPFGDVPDKLSAPLK 210

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198464413|ref|XP_001353209.2| GA16712 [Drosophila pseudoobscura pseudoobscura] gi|198149707|gb|EAL30711.2| GA16712 [Drosophila pseudoobscura pseudoobscura]

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 71/150 (47%), Positives = 93/150 (62%), Gaps = 22/150 (14%)

Query: 2   CESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCG 61
           CES  + T    CC+   E  +    RQ  + H ++ +  +S IL S+A +F+ +     
Sbjct: 110 CESPSVGT----CCTYNMETRMAMQSRQQLEGHTKEQITRMSGILGSKAVKFNDI----- 160

Query: 62  HSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNV 121
                        F ELL  SK  FH MF RTYG+IY+QNS++F+DLF+ELE YF+RG V
Sbjct: 161 -------------FSELLVESKAQFHTMFMRTYGVIYQQNSYVFSDLFKELENYFARGRV 207

Query: 122 DLIEVMDNFFSTLYQKMFTVLNAQYTFDDK 151
           DL+EVMD FF+TLYQKMFTVLN QY FD+K
Sbjct: 208 DLMEVMDKFFNTLYQKMFTVLNTQYAFDEK 237

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864326|ref|XP_003707630.1| PREDICTED: glypican-4-like [Megachile rotundata]

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 106/178 (59%), Gaps = 25/178 (14%)

Query: 3   ESLRICTSRLS----CCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALST 58
           + L+IC S  S    CCS + E+ +    R  ++K  ++TL  L  +L +R  RF     
Sbjct: 52  KELKICGSVRSGGEVCCSADMEVRLQARARDKHEKATKETLQRLHQVLSTRGTRF----- 106

Query: 59  MCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSR 118
              H+F          FK LL+ SK  FH+MFK+TYG +YEQN+++F DLF ELE Y+++
Sbjct: 107 ---HTF----------FKNLLANSKSRFHEMFKQTYGTLYEQNAYVFMDLFTELENYYTK 153

Query: 119 GNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           G VDL ++MDNFFSTLYQKMF VLN QY FD+K     + +   +     FDD P++L
Sbjct: 154 GTVDLDDLMDNFFSTLYQKMFIVLNGQYRFDNK---YLECLGEHMKEMRPFDDVPQKL 208

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
FB|FBgn0041604	939	dlp "dally-like" [Drosophila m	0.515	0.120	0.508	1.8e-24
UNIPROTKB|F1MCX1	505	GPC4 "Uncharacterized protein"	0.584	0.253	0.402	8.8e-20
UNIPROTKB|F1RTE1	503	GPC4 "Uncharacterized protein"	0.584	0.254	0.402	1.4e-19
ZFIN|ZDB-GENE-071004-15	562	zgc:171629 "zgc:171629" [Danio	0.506	0.197	0.438	4.1e-19
UNIPROTKB|B4E2C0	486	GPC4 "cDNA FLJ51457, highly si	0.584	0.263	0.395	9.8e-19
MGI|MGI:104902	557	Gpc4 "glypican 4" [Mus musculu	0.584	0.229	0.395	1.1e-18
RGD|1359399	557	Gpc4 "glypican 4" [Rattus norv	0.584	0.229	0.395	1.1e-18
UNIPROTKB|O75487	556	GPC4 "Glypican-4" [Homo sapien	0.584	0.230	0.395	1.4e-18
UNIPROTKB|Q9Y625	555	GPC6 "Glypican-6" [Homo sapien	0.712	0.281	0.329	3.7e-18
UNIPROTKB|Q5RE54	555	GPC6 "Glypican-6" [Pongo abeli	0.712	0.281	0.329	3.7e-18

FB|FBgn0041604 dlp "dally-like" [Drosophila melanogaster (taxid:7227)]

 Score = 291 (107.5 bits), Expect = 1.8e-24, P = 1.8e-24
 Identities = 58/114 (50%), Positives = 77/114 (67%)

Query:    37 QTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGI 96
             +T  ++ S  +   H  D +S M G    +  +     F  LL  S+  F+ MF RTYG+
Sbjct:   124 ETRMAMQSRQQLEGHTKDQISRMSGILGSKATK-FKDIFTALLKESRTQFNSMFIRTYGV 182

Query:    97 IYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDD 150
             IYE+NS++F+DLF+ELE YF+ G VDL+EVMD FF+TLYQKMFTVLN QYTFD+
Sbjct:   183 IYERNSYVFSDLFKELETYFANGRVDLLEVMDKFFNTLYQKMFTVLNTQYTFDE 236

GO:0016055 "Wnt receptor signaling pathway" evidence=IGI;IMP;TAS

GO:0005576 "extracellular region" evidence=ISS

GO:0008101 "decapentaplegic signaling pathway" evidence=NAS

GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IMP

GO:0007224 "smoothened signaling pathway" evidence=IMP;TAS

GO:0007367 "segment polarity determination" evidence=IMP

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI;IEP

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0045202 "synapse" evidence=IDA

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0045570 "regulation of imaginal disc growth" evidence=IMP

GO:0017147 "Wnt-protein binding" evidence=IDA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IMP

GO:0030177 "positive regulation of Wnt receptor signaling pathway" evidence=IMP

GO:0008589 "regulation of smoothened signaling pathway" evidence=IMP

UNIPROTKB|F1MCX1 GPC4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 242 (90.2 bits), Expect = 8.8e-20, P = 8.8e-20
 Identities = 54/134 (40%), Positives = 80/134 (59%)

Query:    46 LKSRAHRFDALSTMCGHS---FRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNS 102
             L+S+      +S  C H    F    +    FFKELL  ++KS +DMF +TYG +Y QNS
Sbjct:    26 LQSKEDFKSVVSEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNS 85

Query:   103 FLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV 162
              LF DLFEEL++Y+  GNV+L E++++F++ L ++MF ++N+QY F D+      K    
Sbjct:    86 ELFKDLFEELKRYYVAGNVNLEEMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQ 145

Query:   163 LNAQYTFDDNPRQL 176
             L     F D PR+L
Sbjct:   146 LKP---FGDVPRKL 156

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

UNIPROTKB|F1RTE1 GPC4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 240 (89.5 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 54/134 (40%), Positives = 79/134 (58%)

Query:    46 LKSRAHRFDALSTMCGHS---FRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNS 102
             L+S+      +S  C H    F    +    FFKELL  ++KS +DMF +TYG +Y QNS
Sbjct:    24 LQSKDDFKSVVSEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNS 83

Query:   103 FLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV 162
              LF DLFEEL++Y+  GNV+L E++ +F++ L ++MF ++N+QY F D+      K    
Sbjct:    84 ELFKDLFEELKRYYVAGNVNLEEMLQDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQ 143

Query:   163 LNAQYTFDDNPRQL 176
             L     F D PR+L
Sbjct:   144 LKP---FGDVPRKL 154

GO:0005886 "plasma membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

ZFIN|ZDB-GENE-071004-15 zgc:171629 "zgc:171629" [Danio rerio (taxid:7955)]

 Score = 237 (88.5 bits), Expect = 4.1e-19, P = 4.1e-19
 Identities = 50/114 (43%), Positives = 71/114 (62%)

Query:    63 SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
             +F    +    FF ELL  S+KS +DMF RTYG +Y  NS +F DLF EL++Y++ GNV+
Sbjct:    96 TFTSRHKKFDEFFLELLDNSEKSLNDMFVRTYGKLYTHNSEMFEDLFSELKRYYTGGNVN 155

Query:   123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
             L EV+++F+S L ++MF +LN+Q+TF D       K    L     F D PR+L
Sbjct:   156 LEEVLNDFWSRLLERMFQLLNSQFTFSDDYLECISKYTDQLKP---FGDVPRKL 206

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

UNIPROTKB|B4E2C0 GPC4 "cDNA FLJ51457, highly similar to Glypican-4" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 9.8e-19, P = 9.8e-19
 Identities = 53/134 (39%), Positives = 79/134 (58%)

Query:    46 LKSRAHRFDALSTMCGHS---FRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNS 102
             L+S+      +S  C H    F    +    FFKELL  ++KS +DMF +TYG +Y QNS
Sbjct:     7 LQSKDDFKSVVSEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNS 66

Query:   103 FLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV 162
              LF DLF EL++Y+  GNV+L E++++F++ L ++MF ++N+QY F D+      K    
Sbjct:    67 ELFKDLFVELKRYYVVGNVNLEEMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQ 126

Query:   163 LNAQYTFDDNPRQL 176
             L     F D PR+L
Sbjct:   127 LKP---FGDVPRKL 137

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

MGI|MGI:104902 Gpc4 "glypican 4" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 53/134 (39%), Positives = 79/134 (58%)

Query:    46 LKSRAHRFDALSTMCGHS---FRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNS 102
             L+S+      +S  C H    F    +    FFKELL  ++KS +DMF +TYG +Y QNS
Sbjct:    77 LQSKDDFKTVVSEQCNHLQAIFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNS 136

Query:   103 FLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV 162
              LF DLF EL++Y+  GNV+L E++++F++ L ++MF ++N+QY F D+      K    
Sbjct:   137 ELFKDLFVELKRYYVAGNVNLEEMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQ 196

Query:   163 LNAQYTFDDNPRQL 176
             L     F D PR+L
Sbjct:   197 LKP---FGDVPRKL 207

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IEA

RGD|1359399 Gpc4 "glypican 4" [Rattus norvegicus (taxid:10116)]

 Score = 233 (87.1 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 53/134 (39%), Positives = 79/134 (58%)

Query:    46 LKSRAHRFDALSTMCGHS---FRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNS 102
             L+S+      +S  C H    F    +    FFKELL  ++KS +DMF +TYG +Y QNS
Sbjct:    77 LQSKDDFQTVVSEQCNHLQAIFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNS 136

Query:   103 FLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV 162
              LF DLF EL++Y+  GNV+L E++++F++ L ++MF ++N+QY F D+      K    
Sbjct:   137 ELFKDLFVELKRYYVAGNVNLEEMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQ 196

Query:   163 LNAQYTFDDNPRQL 176
             L     F D PR+L
Sbjct:   197 LKP---FGDVPRKL 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009897 "external side of plasma membrane" evidence=IEA;ISO

GO:0031225 "anchored to membrane" evidence=IEA

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IEA

UNIPROTKB|O75487 GPC4 "Glypican-4" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 53/134 (39%), Positives = 79/134 (58%)

Query:    46 LKSRAHRFDALSTMCGHS---FRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNS 102
             L+S+      +S  C H    F    +    FFKELL  ++KS +DMF +TYG +Y QNS
Sbjct:    77 LQSKDDFKSVVSEQCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNS 136

Query:   103 FLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV 162
              LF DLF EL++Y+  GNV+L E++++F++ L ++MF ++N+QY F D+      K    
Sbjct:   137 ELFKDLFVELKRYYVVGNVNLEEMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQ 196

Query:   163 LNAQYTFDDNPRQL 176
             L     F D PR+L
Sbjct:   197 LKP---FGDVPRKL 207

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0005796 "Golgi lumen" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006024 "glycosaminoglycan biosynthetic process" evidence=TAS

GO:0006027 "glycosaminoglycan catabolic process" evidence=TAS

GO:0030203 "glycosaminoglycan metabolic process" evidence=TAS

GO:0030204 "chondroitin sulfate metabolic process" evidence=TAS

GO:0043202 "lysosomal lumen" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q9Y625 GPC6 "Glypican-6" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 3.7e-18, P = 3.7e-18
 Identities = 56/170 (32%), Positives = 92/170 (54%)

Query:     7 ICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRE 66
             I    L  C QE+         +  DK  +Q+     ++++  +H F   + +  H    
Sbjct:    52 IAGEHLRICPQEYTCCT----TEMEDKLSQQSKLEFENLVEETSH-FVRTTFVSRH---- 102

Query:    67 LRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEV 126
               +    FF+ELL  ++KS +DMF RTYG++Y QNS +F DLF EL++Y++ GNV+L E+
Sbjct:   103 --KKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVNLEEM 160

Query:   127 MDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
             +++F++ L ++MF ++N QY F +       K    L     F D PR+L
Sbjct:   161 LNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKP---FGDVPRKL 207

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0016477 "cell migration" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005796 "Golgi lumen" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006024 "glycosaminoglycan biosynthetic process" evidence=TAS

GO:0006027 "glycosaminoglycan catabolic process" evidence=TAS

GO:0030203 "glycosaminoglycan metabolic process" evidence=TAS

GO:0030204 "chondroitin sulfate metabolic process" evidence=TAS

GO:0043202 "lysosomal lumen" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5RE54 GPC6 "Glypican-6" [Pongo abelii (taxid:9601)]

 Score = 228 (85.3 bits), Expect = 3.7e-18, P = 3.7e-18
 Identities = 56/170 (32%), Positives = 92/170 (54%)

Query:     7 ICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRE 66
             I    L  C QE+         +  DK  +Q+     ++++  +H F   + +  H    
Sbjct:    52 IAGEHLRICPQEYTCCT----TEMEDKLSQQSKLEFENLVEETSH-FVRTTFVSRH---- 102

Query:    67 LRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEV 126
               +    FF+ELL  ++KS +DMF RTYG++Y QNS +F DLF EL++Y++ GNV+L E+
Sbjct:   103 --KKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVNLEEM 160

Query:   127 MDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
             +++F++ L ++MF ++N QY F +       K    L     F D PR+L
Sbjct:   161 LNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKP---FGDVPRKL 207

GO:0016477 "cell migration" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	219
pfam01153	559	pfam01153, Glypican, Glypican	1e-29

>gnl|CDD|216334 pfam01153, Glypican, Glypican

 Score =  115 bits (289), Expect = 1e-29
 Identities = 62/174 (35%), Positives = 91/174 (52%), Gaps = 21/174 (12%)

Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E  +    R  +++ L+++  SL  +L S A +FD        
Sbjct: 51  EHLRICPQGYTCCTSEMEERLSLQSRVDFEQLLQESSSSLQGLLTSNARKFDE------- 103

Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                      FF ELL  S+ S +DMF +TYG +Y QNS LF DLF EL  Y+   +V+
Sbjct: 104 -----------FFLELLRNSENSLNDMFVKTYGRLYPQNSELFNDLFTELRLYYVGSSVN 152

Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           L E+++ F++ L ++MF ++N QY+F D       K    L     F D PR+L
Sbjct: 153 LEEMLNEFWARLLERMFRLVNPQYSFSDDYLECLSKATEQLKP---FGDIPRKL 203

Length = 559

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
KOG3821|consensus	563		100.0
PF01153	557	Glypican: Glypican; InterPro: IPR001863 Glypicans	100.0
KOG3821|consensus	563		81.27

>KOG3821|consensus

Probab=100.00  E-value=4.4e-62  Score=461.86  Aligned_cols=191  Identities=32%  Similarity=0.514  Sum_probs=185.6

Q ss_pred             CCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhhccccccccCcchhhhccChhHHHHHHHHHH
Q psy5178           3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTS   82 (219)
Q Consensus         3 ~~L~vC~~g~TCCt~~mEe~l~~~s~~~~e~~v~~~s~~L~~~l~~~~~~Fd~~~~~~~~~~~~~~~~~~e~F~~LL~~s   82 (219)
                      |||+||||||||||+|||++|+.+|+.+||++++++++.|+++|++||++||                  |||++||+.|
T Consensus        57 e~l~iC~~~~tCCt~emEerl~~~a~~~feqllq~~s~~Lr~~l~s~~r~F~------------------E~f~ell~~a  118 (563)
T KOG3821|consen   57 EHLRICPQGYTCCTREMEERLQLQARDMFEQLLQDSSSVLRFVLASNARKFD------------------EFFLELLRNA  118 (563)
T ss_pred             cceeeCCCCcCcccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999                  9999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHhh
Q psy5178          83 KKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV  162 (219)
Q Consensus        83 e~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f~llnp~~~~~~dy~eCl~~~~~~  162 (219)
                      ||+|++||+++||+||+||+.+|++||++|++||.|+++||||+|++||++|||+||+++||+|++++||.+|+++.++ 
T Consensus       119 e~~l~~mF~~tYg~ly~qn~~~~~dlFtel~~y~~~~~~nlee~l~eff~~Lf~~~f~~l~~~~~~~~Dy~eCl~~~~~-  197 (563)
T KOG3821|consen  119 ENSLNAMFSKTYGSLYPQNAELFNDLFTELKLYYVGSNVNLEETLNEFFARLFEVMFSQLNPQYDFTLDYLECLSKARR-  197 (563)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hccCCCCCCchhhhccchh----hhchHHHHhhhHHHHHHHHHHHhcccCCCCceeeec
Q psy5178         163 LNAQYTFDDNPRQLGSPME----AHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHIL  217 (219)
Q Consensus       163 ~~~l~PFGd~P~~L~~ql~----AaR~f~qaL~~g~eVv~~~t~~~~~~~~~~~~~~~~  217 (219)
                        +|+||||+||+|+.|++    |||+|+|||++|+|||++++..   ..+.+|+-||+
T Consensus       198 --~l~pFGdiPq~l~~Q~trsl~~ar~Flq~L~~g~eVv~~~~~v---~~s~~C~raLl  251 (563)
T KOG3821|consen  198 --ELKPFGDIPQKLMLQVTRSLVAARTFLQGLEVGIEVVSEVDKV---PFSEECSRALL  251 (563)
T ss_pred             --hcCCcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcC---CCChHHHHHHH
Confidence              99999999999999999    9999999999999999997643   37788887765

>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage

Probab=100.00  E-value=1.3e-58  Score=446.03  Aligned_cols=190  Identities=34%  Similarity=0.615  Sum_probs=172.8

Q ss_pred             CCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhhccccccccCcchhhhccChhHHHHHHHHHH
Q psy5178           3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTS   82 (219)
Q Consensus         3 ~~L~vC~~g~TCCt~~mEe~l~~~s~~~~e~~v~~~s~~L~~~l~~~~~~Fd~~~~~~~~~~~~~~~~~~e~F~~LL~~s   82 (219)
                      +||||||+||||||++||++|+++|+++||++|++++++|+++|.+++++||                  +||++||++|
T Consensus        49 ~~L~vCp~g~TCCT~~mEe~l~~~s~~~~~~~v~~~s~~L~~~l~~~~~~F~------------------~~f~~ll~~s  110 (557)
T PF01153_consen   49 EHLRVCPQGYTCCTSEMEERLQQASRREFEQLVQESSRSLQHLLSTRARKFD------------------EFFRELLRQS  110 (557)
T ss_dssp             TT-SSS-SSSBSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
T ss_pred             cccCcCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999999                  9999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHhh
Q psy5178          83 KKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV  162 (219)
Q Consensus        83 e~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f~llnp~~~~~~dy~eCl~~~~~~  162 (219)
                      |++|++||+++||.||.||+++|.+||++|++||.|+++||+++|++||++|||++|+++||+|.+++||++|++++++ 
T Consensus       111 e~~~~~~F~~~Y~~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~l~~Ff~~Lf~~~f~llnp~~~~~~dy~~Cl~~~~~-  189 (557)
T PF01153_consen  111 ENSLHSMFSRTYGSLYPQNRPIFQDLFTDLRRYYLGSNVNLEEALNEFFDRLFPRVFRLLNPQYQFSDDYLECLRKAME-  189 (557)
T ss_dssp             HHHHHHHHHHHTTHHHHCTHHHHHHHHHHHHHHHCCS-S-HHHHHHHHHHHHHHHHHHHHTTTSB--CHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhccCcCCCchHHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hccCCCCCCchhhhccchh----hhchHHHHhhhHHHHHHHHHHHhcccCCCCceeee
Q psy5178         163 LNAQYTFDDNPRQLGSPME----AHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHI  216 (219)
Q Consensus       163 ~~~l~PFGd~P~~L~~ql~----AaR~f~qaL~~g~eVv~~~t~~~~~~~~~~~~~~~  216 (219)
                        +|+||||+|++|+.|++    |||+|+|||++|+|||+++. +.  +....|.-+|
T Consensus       190 --~l~PFGd~P~~l~~~l~rsl~a~R~f~qaL~~g~eVv~~~~-~~--~~s~~C~raL  242 (557)
T PF01153_consen  190 --DLKPFGDIPRKLKSQLSRSLVAARVFLQALNLGREVVNKTD-QV--PLSPECSRAL  242 (557)
T ss_dssp             --HH-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T------CHHHHHH
T ss_pred             --hhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC--CCCcHHHHHH
Confidence              99999999999999999    99999999999999999965 33  5555665544

Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.

>KOG3821|consensus

Probab=81.27  E-value=20  Score=35.80  Aligned_cols=55  Identities=15%  Similarity=0.229  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHH-HHhccCCCCChHHHHHHHHHHhhhccCCCCCCchhhhccchh
Q psy5178         124 IEVMDNFFSTLYQKMF-TVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPME  181 (219)
Q Consensus       124 e~~l~~FF~~Lf~~~f-~llnp~~~~~~dy~eCl~~~~~~~~~l~PFGd~P~~L~~ql~  181 (219)
                      .+++++||.+|---.. .-+|+.-.+.+.+..-+...+.   .+.|++|.|.....=|+
T Consensus       138 ~~~~~dlFtel~~y~~~~~~nlee~l~eff~~Lf~~~f~---~l~~~~~~~~Dy~eCl~  193 (563)
T KOG3821|consen  138 AELFNDLFTELKLYYVGSNVNLEETLNEFFARLFEVMFS---QLNPQYDFTLDYLECLS  193 (563)
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH---HhcCCcCCcHHHHHHHH
Confidence            3455555555533222 2233322344445566666666   99999999988776666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
3odn_A	506	The Crystal Structure Of Drosophila Dally-Like Prot		1e-29
4ad7_A	528	Crystal Structure Of Full-Length N-Glycosylated Hum		7e-13
4acr_A	478	Crystal Structure Of N-Glycosylated, C-Terminally T		8e-13

>pdb|3ODN|A Chain A, The Crystal Structure Of Drosophila Dally-Like Protein Core Domain Length = 506

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 89/149 (59%), Gaps = 22/149 (14%)
Query: 2   CESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCG 61
           CES  + T    CC+   E  +    RQ  + H +  +  +S IL S+A +F  +     
Sbjct: 37  CESPSVGT----CCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKATKFKDI----- 87
Query: 62  HSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNV 121
                        F  LL  S+  F+ MF RTYG+IYE+NS++F+DLF+ELE YF+ G V
Sbjct: 88  -------------FTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRV 134
Query: 122 DLIEVMDNFFSTLYQKMFTVLNAQYTFDD 150
           DL+EVMD FF+TLYQKMFTVLN QYTFD+
Sbjct: 135 DLLEVMDKFFNTLYQKMFTVLNTQYTFDE 163

>pdb|4AD7|A Chain A, Crystal Structure Of Full-Length N-Glycosylated Human Glypican-1 Length = 528

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E ++ N      +  LR +   L ++L ++   FD        
Sbjct: 56  EHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFD-------- 107
Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                       F+ LL+ S+++    F   +G +Y QN+  F DL+ EL  Y+   N+ 
Sbjct: 108 ----------DHFQHLLNDSERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLH 157
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           L E +  F++ L +++F  L+ Q    DD +  L ++      A   F + PR+L
Sbjct: 158 LEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQA----EALRPFGEAPREL 208

>pdb|4ACR|A Chain A, Crystal Structure Of N-Glycosylated, C-Terminally Truncated Human Glypican-1 Length = 478

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E ++ N      +  LR +   L ++L ++   FD        
Sbjct: 56  EHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFD-------- 107
Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                       F+ LL+ S+++    F   +G +Y QN+  F DL+ EL  Y+   N+ 
Sbjct: 108 ----------DHFQHLLNDSERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLH 157
Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTF-DDKISTLYQKIFTVLNAQYTFDDNPRQL 176
           L E +  F++ L +++F  L+ Q    DD +  L ++      A   F + PR+L
Sbjct: 158 LEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQA----EALRPFGEAPREL 208

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
3odn_A	506	Dally-like protein; alpha helical bundle, hedgehog	1e-31
4acr_A	478	Glypican-1; proteoglycan, glycosaminoglycans, hepa	1e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster} Length = 506

 Score =  119 bits (298), Expect = 1e-31
 Identities = 72/180 (40%), Positives = 96/180 (53%), Gaps = 23/180 (12%)

Query: 3   ESLRICTSRL--SCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMC 60
             LR C S    +CC+   E  +    RQ  + H +  +  +S IL S+A +F       
Sbjct: 32  RVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKATKF------- 84

Query: 61  GHSFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGN 120
                         F  LL  S+  F+ MF RTYG+IYE+NS++F+DLF+ELE YF+ G 
Sbjct: 85  -----------KDIFTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGR 133

Query: 121 VDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPM 180
           VDL+EVMD FF+TLYQKMFTVLN QYTFD+       +    L     F D P +L   +
Sbjct: 134 VDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHMKELKP---FGDVPDKLSVQI 190

>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate, helical B glycoprotein, membrane protein; HET: NAG; 2.55A {Homo sapiens} PDB: 4ad7_A* Length = 478

 Score =  113 bits (283), Expect = 1e-29
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%)

Query: 3   ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGH 62
           E LRIC    +CC+ E E ++ N      +  LR +   L ++L ++   FD        
Sbjct: 56  EHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFD-------- 107

Query: 63  SFRELRRSLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVD 122
                       F+ LL+ S+++    F   +G +Y QN+  F DL+ EL  Y+   N+ 
Sbjct: 108 ----------DHFQHLLNDSERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLH 157

Query: 123 LIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTVLNAQYTFDDNPRQLGSPM 180
           L E +  F++ L +++F  L+ Q    D       K    L     F + PR+L    
Sbjct: 158 LEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQAEALRP---FGEAPRELRLRA 212

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 34/249 (13%), Positives = 73/249 (29%), Gaps = 71/249 (28%)

Query: 8   CTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSS----IL-------KS-------R 49
              RL   +     + +NV R      LRQ L  L      ++       K+        
Sbjct: 115 QRDRL--YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 50  AHRFDALSTMCGH----SFRELRR--SLPGFFKELLSTSKKSFHDMFKRTYGIIYEQNSF 103
           +++      M       + +      ++    ++LL     ++      +  I    +  
Sbjct: 173 SYKV--QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-- 228

Query: 104 LFTDLFEELEKYFS--RGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDK----ISTLYQ 157
               +  EL +          L+ V+ N  +          NA   F+      ++T ++
Sbjct: 229 ---SIQAELRRLLKSKPYENCLL-VLLNVQNA------KAWNA---FNLSCKILLTTRFK 275

Query: 158 KIFTVLNAQYTF----DDNPRQLGS------------------PMEAHGGEPQLLNCKSD 195
           ++   L+A  T     D +   L                    P E     P+ L+  ++
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 196 SSKSFTIRF 204
           S +     +
Sbjct: 336 SIRDGLATW 344

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
3odn_A	506	Dally-like protein; alpha helical bundle, hedgehog	100.0
4acr_A	478	Glypican-1; proteoglycan, glycosaminoglycans, hepa	100.0

>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-60  Score=450.51  Aligned_cols=191  Identities=41%  Similarity=0.672  Sum_probs=171.6

Q ss_pred             CCCccc--CCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhhccccccccCcchhhhccChhHHHHHHHH
Q psy5178           3 ESLRIC--TSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLS   80 (219)
Q Consensus         3 ~~L~vC--~~g~TCCt~~mEe~l~~~s~~~~e~~v~~~s~~L~~~l~~~~~~Fd~~~~~~~~~~~~~~~~~~e~F~~LL~   80 (219)
                      +|||||  |+||||||++||++|+++|+++||++|++++++|+++|.++|++||                  |||++||+
T Consensus        32 ~~LrvC~~pqg~TCCT~~MEe~l~~~s~~~~e~~l~~~s~~L~~~l~~~~~~F~------------------e~F~~LL~   93 (506)
T 3odn_A           32 RVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKATKFK------------------DIFTALLK   93 (506)
T ss_dssp             ------------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
T ss_pred             CcCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
Confidence            799999  9999999999999999999999999999999999999999999999                  99999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Q psy5178          81 TSKKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIF  160 (219)
Q Consensus        81 ~se~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f~llnp~~~~~~dy~eCl~~~~  160 (219)
                      .||++|++||+++||+||.||+++|.+||++|++||.|+++||+++|++||++|||+||+++||+|+|++||++||++++
T Consensus        94 ~Se~~l~~mF~~tYg~ly~qn~~~f~~LF~~L~~Yy~g~~v~Lee~v~~Ff~~Lf~~~f~llnp~~~~s~dY~eCl~~~~  173 (506)
T 3odn_A           94 ESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHM  173 (506)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCCchhhhccchh----hhchHHHHhhhHHHHHHHHHHHhcccCCCCceeeec
Q psy5178         161 TVLNAQYTFDDNPRQLGSPME----AHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIHIL  217 (219)
Q Consensus       161 ~~~~~l~PFGd~P~~L~~ql~----AaR~f~qaL~~g~eVv~~~t~~~~~~~~~~~~~~~~  217 (219)
                      +   +|+||||+|++|+.+|+    |||+|+|||++|+|||+++.   .+..+..|.-+|+
T Consensus       174 ~---~l~PFGdvP~kL~~ql~Rs~~AaR~f~QaL~~g~eVv~~~~---~v~ls~eC~rALm  228 (506)
T 3odn_A          174 K---ELKPFGDVPDKLSVQIKRSFVATRTYGQALTTASEVAKKVL---NVRLNADCTGALT  228 (506)
T ss_dssp             H---HHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C----THHHHHHH
T ss_pred             H---hhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCcHHHHHHH
Confidence            9   99999999999999999    99999999999999999965   4556666765543

>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate, helical B glycoprotein, membrane protein; HET: NAG; 2.55A {Homo sapiens} PDB: 4ad7_A*

Probab=100.00  E-value=6.9e-60  Score=445.17  Aligned_cols=189  Identities=28%  Similarity=0.459  Sum_probs=145.2

Q ss_pred             CCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhhccccccccCcchhhhccChhHHHHHHHHHH
Q psy5178           3 ESLRICTSRLSCCSQEHEISVHNVIRQSYDKHLRQTLYSLSSILKSRAHRFDALSTMCGHSFRELRRSLPGFFKELLSTS   82 (219)
Q Consensus         3 ~~L~vC~~g~TCCt~~mEe~l~~~s~~~~e~~v~~~s~~L~~~l~~~~~~Fd~~~~~~~~~~~~~~~~~~e~F~~LL~~s   82 (219)
                      +||||||+||||||++||++|+++|+++||++|+++|++|+++|.+++++||                  +||++||+.|
T Consensus        56 ~~L~vCp~g~TCCT~~MEe~l~~~s~~~~e~~v~~~s~~L~~~l~~~~~~F~------------------e~F~~Ll~~s  117 (478)
T 4acr_A           56 EHLRICPQGYTCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFD------------------DHFQHLLNDS  117 (478)
T ss_dssp             TTCSSSCSSSBSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
T ss_pred             CccCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999999                  9999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHhh
Q psy5178          83 KKSFHDMFKRTYGIIYEQNSFLFTDLFEELEKYFSRGNVDLIEVMDNFFSTLYQKMFTVLNAQYTFDDKISTLYQKIFTV  162 (219)
Q Consensus        83 e~~l~~mF~~tYg~ly~qn~~~f~~LF~dL~~Y~~G~~~~Le~~l~~FF~~Lf~~~f~llnp~~~~~~dy~eCl~~~~~~  162 (219)
                      |++|++||+++||.||.||+++|.+||++|++||.|+++||+++|++||++|||+||+++||+|.+++||++|++++++ 
T Consensus       118 e~~l~~~F~~~Yg~ly~q~~~~f~~LF~~L~~Yy~G~~v~Lee~v~~Ff~~Lf~~~f~~lnp~~~~s~~y~~Cl~~~~~-  196 (478)
T 4acr_A          118 ERTLQATFPGAFGELYTQNARAFRDLYSELRLYYRGANLHLEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQAE-  196 (478)
T ss_dssp             HHHHHHHCTTTSTHHHHHHHHHHHHHHHHHHHHHTTSCCCC------CHHHHHHHC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999998899999999999999999999 


Q ss_pred             hccCCCCCCchhhhccchh----hhchHHHHhhhHHHHHHHHHHHhcccCCCCceee
Q psy5178         163 LNAQYTFDDNPRQLGSPME----AHGGEPQLLNCKSDSSKSFTIRFGVKNPMGSTIH  215 (219)
Q Consensus       163 ~~~l~PFGd~P~~L~~ql~----AaR~f~qaL~~g~eVv~~~t~~~~~~~~~~~~~~  215 (219)
                        +|+||||+|++|+.||+    |||+|+|||++|+||||++. +  +.....|.-+
T Consensus       197 --~l~PFGd~P~~l~~ql~rs~~aaR~f~qaL~~g~eVvn~~~-~--v~~s~eC~ra  248 (478)
T 4acr_A          197 --ALRPFGEAPRELRLRATRAFVAARSFVQGLGVASDVVRKVA-Q--VPLGPECSRA  248 (478)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T--CCCCHHHHHH
T ss_pred             --hhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--CCCCcHHHHH
Confidence              99999999999999999    99999999999999999954 3  3444455443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00