Psyllid ID: psy5195

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MFGRPSKVSTSQNKSLHLTGIGLAVQAFYINLTLDTVMGGEYAELQPVGPPLINTPGVWGVNGAYTGAYNTGVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQVAGFSTSYNKHESGNKATYYDDGLGHGGSIQYGSKDHRSRDGVGNAFGGAYHDAHLKTNAHGNKQNFGGGQGFGTKTGYVNNVGDTKLYGGGVGQGYTGTFNNGFNPALPVLPPAPVPYIPPPPVITPPVLPQSPVISGVFSPNPVITKNYQPYPSHPVGLVTRSSTKYQIPAPTKLFVDKAKDVKS
Secondary Structure (PSIPRED)
cccccccccccccccEEEEccHHEEEEEEEEEEEEcccccccEEEccccccccccccEEccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccEEEEcccccHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccccEcHcHHHHHHHHEHHHccHHHcccccccccccccccEEccccEEEEccccccccccccccccccccccEccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccEEEccccccccEEEEccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEcccccccccEEEEEEccccEEEcccccEEEcccccccc
Coil and Loop (DISEMBL)
mfgrpskvstsqnkslhLTGIGLAVQAFYINLTLdtvmggeyaelqpvgpplintpgvwgvngaytgayntgvnglsnngiqalntygdrgygaggytdangfyhgnlgtkngydvghaygggkdigltnvqggsygdvrgrnrghqvagfstsynkhesgnkatyyddglghggsiqygskdhrsrdgvgnafggayhdahlktnahgnkqnfgggqgfgtktgyvnnvgdtklygggvgqgytgtfnngfnpalpvlppapvpyippppvitppvlpqspvisgvfspnpvitknyqpypshpvglvtrsstkyqipaptklfvdkakdvks
Flexible Loop (DISEMBL)
mfgrpskvstsqnksLHLTGIGLAVQAFYINLTLDTVMGGEYAELQPVGPPLINTPGVWGVNGAYTGAYNTGVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQVAGfstsynkhesgnKATYYDDGLGHGGSIQYGSKDHRSRDGVGNAFGGAYHDAHLKTNAHGNKQNFGGGQGFGTKTGYVNNVGDTKLYGGGVGQGYTGTFNNGFNPALPVLPPAPVPYIPPPPVITPPVLPQSPVISGVFSPNPVITKNYQPYPSHPVGLVTRsstkyqipaptklfvdkakdvks
Low Complexity Region (SEG)
MFGRPSKVSTSQNKSLHLTGIGLAVQAFYINLTLDTVMGGEYAELQPVGPPLINTPGVWGVNGAYTGAYNTGVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQVAGFSTSYNKHESGNKATYYDDGLGHGGSIQYGSKDHRSRDGVGNAFGGAYHDAHLKTNAHgnkqnfgggqgfgtktgYVNNVGDTKLygggvgqgytgtFNNGFNpalpvlppapvpyippppvitppvlpQSPVISGVFSPNPVITKNYQPYPSHPVGLVTRSSTKYQIPAPTKLFVDKAKDVKS
Disordered region (IsUnstruct)
***************LHLTGIGLAVQAFYINLTLDTVMGGEYAELQPVGPPLINTPGVWGVNGAYTGAYNTGVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGGGKDIGLTNV***********************************************************GNAFGGAYHDAHLKTNAHGNKQNFGGGQGFGTKTGYVNNVGDTKLYGGGVGQGYTGTFNNGFNPALPVLPPAPVPYIPPPPVITPPVLPQSPVISGVFSPNPVITKNYQPYPSHPVGLVT*****Y******************
Disordered Region (DISOPRED)
**************SLHLTGIGLAVQAFYINLTLDTVMGGEYAELQPVGPPLINTPGVWGVNGAY***************I*************************************************************************Y***ESGNKATYYDDGLG***************************************************************************************************VITPPVLPQSPVISGVFSPNPVITKNYQPYPSHPVGLVTRSSTKYQIPAPTKLFVD*A*****
Disordered Region (DISEMBL)
**************SLHLTGIGLAVQAFYINLTLDTVMGGEYAELQPVGPPLINTPGVWGVNGAYTGAYNTGVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQVAGFSTSYNKHESGNKATYYDDGLGHGGSIQYGSKDHRSRDGVGNAFGGAYHDAHLKTNAHGNKQNFGGGQGFGTKTGYVNNVGDTKLYGGGVGQGYTGTFNNGFNPALPVLPPAPVPYIPPPPVITPPVLPQSPVISGVFSPNPVITKNYQPYPSHPVGLVTRSSTKYQIPAPTKLFV********
Disordered Region (DISPRO)
****PSKV*****KSLHLTGIGLAVQAFYINLTLDTVMGGEYAELQPVGPPLINTPGVWGVNGAYTGAYNTGVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGGGKDIGLTN**GGSYGD*******HQVAGFSTSYNKHESGNKATYYDDGLGHGGSIQYGSKDHRSRDGVGNAFGGAYHDAHLKTNAHGNKQNFGGGQGFGTKTGYVNNVGDTKLYGGGVGQGYTGTFNNGFNPALPVLPPAPVPYIPPPPVITPPVLPQSPVISGVFSPNPVITKNYQPYPSHPVGLVTRSSTKYQIPAPTKLFVDKA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFGRPSKVSTSQNKSLHLTGIGLAVQAFYINLTLDTVMGGEYAELQPVGPPLINTPGVWGVNGAYTGAYNTGVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQVAGFSTSYNKHESGNKATYYDDGLGHGGSIQYGSKDHRSRDGVGNAFGGAYHDAHLKTNAHGNKQNFGGGQGFGTKTGYVNNVGDTKLYGGGVGQGYTGTFNNGFNPALPVLPPAPVPYIPPPPVITPPVLPQSPVISGVFSPNPVITKNYQPYPSHPVGLVTRSSTKYQIPAPTKLFVDKAKDVKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
328700243	376	PREDICTED: hypothetical protein LOC10057	0.964	0.856	0.471	3e-71
347964393	376	AGAP000734-PA [Anopheles gambiae str. PE	0.628	0.558	0.239	0.0008

>gi|328700243|ref|XP_003241193.1| PREDICTED: hypothetical protein LOC100574750 isoform 1 [Acyrthosiphon pisum] gi|328700245|ref|XP_003241194.1| PREDICTED: hypothetical protein LOC100574750 isoform 2 [Acyrthosiphon pisum]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 174/369 (47%), Positives = 216/369 (58%), Gaps = 47/369 (12%)

Query: 6   SKVSTSQNKSLHLTGIGLAVQAFYINLTLDTVMGGEYAELQPVGPPLINTPGVWGVNGAY 65
           +KVST+ NKSLHLTGIGLAVQAFYINLTLDTVMGG++ +L+P GPP+IN  GVW V+   
Sbjct: 2   TKVSTASNKSLHLTGIGLAVQAFYINLTLDTVMGGDFVQLKPAGPPIINPTGVWSVDQVP 61

Query: 66  TGAYNTGVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGGGKD 125
            G Y T  + L+ NG+QAL  +G     A GY D NGFY  N G  NGYDVG+ YGG  D
Sbjct: 62  QG-YATAGSNLALNGLQALQAFGGNKIDANGYRDQNGFYRDNNGALNGYDVGNTYGGVND 120

Query: 126 IGLTNVQGGSYGDVRGRNRGHQVAGFSTSYNKHESGNKATYYDDGLGHGGSIQYGSKDHR 185
            G+T+V+GG+YG + GRN+GHQVAGFSTSY K+ESGNKATYYDDGLGHGG IQYG+KD R
Sbjct: 121 RGVTSVEGGAYGGINGRNKGHQVAGFSTSYQKNESGNKATYYDDGLGHGGVIQYGAKDQR 180

Query: 186 SRDGVGNAFGGAYHDAHLKTNAHGNKQNFGGGQGFGTKTGYVNNVGDTKLYGGGVGQG-- 243
            RDG G AFGG YHD+ +KTNA G +  FG G G+ T  G   +  + +LYG     G  
Sbjct: 181 FRDGEGKAFGGGYHDSSVKTNAVGQQGQFGNGDGYHTAGGQTGDAVNNQLYGTRSDSGPG 240

Query: 244 -YTGT---------------FNNGFNPALPVLPPAPVPYIPPPPVI-------TPPVLPQ 280
              GT                   +    P   P    Y+PP   +         P +PQ
Sbjct: 241 IVAGTPFLVSTTDPLPPVVHLPPQYVQQSPQYIPQAPQYVPPAQYVPQAQYVPQAPYIPQ 300

Query: 281 SPVISG---------VFSPN-----PVITKN----YQPYPSH--PVGLVTRS-STKYQIP 319
           +P ++          +F  N     P+I +       PY      + L  RS S +Y +P
Sbjct: 301 APFVAQAPFAAQAPTLFQNNIPQLPPIIQQQPGSILPPYNVQLPALSLSARSPSGQYVVP 360

Query: 320 APTKLFVDK 328
            P KL+VDK
Sbjct: 361 MPPKLYVDK 369

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964393|ref|XP_559373.4| AGAP000734-PA [Anopheles gambiae str. PEST] gi|333467510|gb|EAL41122.4| AGAP000734-PA [Anopheles gambiae str. PEST]

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 24/234 (10%)

Query: 104 YHGNLGTKNGYDVGHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQVAGFSTSYNKHESGNK 163
           YH      +G+ V  A  G     + ++ G ++   +  NR H  +GFS SY+K ESG+K
Sbjct: 100 YHQLDNQLDGHRVVDASKGSTVDKVKHLAGENFEADKSHNRKHIKSGFSNSYHKDESGSK 159

Query: 164 ATYYDDGLGHGGSIQYGSKDHRSRDGVGNAFGGAYHDAHLKTNAHGN---KQNFGGGQ-- 218
           ++YY+D   HGG   Y ++ +   D     +     + +L+ +        +  GG Q  
Sbjct: 160 SSYYEDSDDHGGKQVYDNRHNLRNDYADKLYSQDRRNDYLRDHYDDRASGSELLGGHQYR 219

Query: 219 ---------GFGTKTGYVNNVGDTKLYGGGVGQGYTGTFNNGFNPALPVLPPAPVPYIPP 269
                     +G + GY +N    + YG     GY   +    N     L      Y P 
Sbjct: 220 RVGALDRGNAYGHRDGYAHNDHSDQHYGTQSYGGYD-HYQPAANYHYDDLYRRRSYYDPR 278

Query: 270 PPVITPPVLPQSPVISG---VFSPNPVITKNYQPYPSHPV----GLVTRSSTKY 316
           P   T P+ P    I      ++P P    +  PYP+  +     +++R  + Y
Sbjct: 279 PAFATAPLAPAPITIYEDPRDYAPYPAALAS--PYPAREIRDGSAVLSRDESSY 330

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2019622	289	GR-RBP5 "AT1G74230" [Arabidops	0.389	0.449	0.324	3.7e-07
ZFIN|ZDB-GENE-030131-618	302	hnrnpa0l "heterogeneous nuclea	0.317	0.350	0.339	9.4e-07
DICTYBASE|DDB_G0292870	570	pex13 "peroxin 13" [Dictyostel	0.401	0.235	0.301	1.4e-06
UNIPROTKB|F1PB61	571	TAF15 "Uncharacterized protein	0.401	0.234	0.333	1.4e-06
MGI|MGI:1924384	305	Hnrnpa0 "heterogeneous nuclear	0.314	0.344	0.366	2.9e-06
UNIPROTKB|F1S187	406	LOC100518332 "Uncharacterized	0.416	0.342	0.331	3.9e-06
UNIPROTKB|Q92804	592	TAF15 "TATA-binding protein-as	0.407	0.229	0.333	5.6e-06
WB|WBGene00017484	118	F15E6.3 [Caenorhabditis elegan	0.236	0.669	0.370	8.2e-06
UNIPROTKB|E9PSU5	363	E9PSU5 "Uncharacterized protei	0.356	0.327	0.338	9.3e-06
MGI|MGI:2157572	141	Krtap19-2 "keratin associated	0.389	0.921	0.317	1.3e-05

TAIR|locus:2019622 GR-RBP5 "AT1G74230" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 48/148 (32%), Positives = 62/148 (41%)

Query:    60 GVNGAYTGAYNTGVNGLSNNGIQALNTYGDRGYG--------AGGYTDANGFYHGN-LGT 110
             G  GA  G Y  G  G   N   + N  G  GYG        AGGY   N  Y GN +G 
Sbjct:   133 GGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGGNAGGY-GGNPPYSGNAVGG 191

Query:   111 KNGYDVGHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQVAGFSTSYNKHES-GNKATYYDD 169
               GY  G  +GGG   G+    GGS    +G +     AGF   +  ++  GN   +  +
Sbjct:   192 GGGY--GSNFGGGGGYGVAGGVGGSENFAQGSSTN---AGFDDKFESNQPLGNDTDHQTE 246

Query:   170 GLGHGGSIQYGSKDHRSRDGV-GNAFGG 196
               G GG  Q+G  D++  D   GN   G
Sbjct:   247 S-GLGGDEQFGGSDNQFGDAENGNTENG 273

GO:0003723 "RNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

ZFIN|ZDB-GENE-030131-618 hnrnpa0l "heterogeneous nuclear ribonucleoprotein A0, like" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 9.4e-07, P = 9.4e-07
 Identities = 39/115 (33%), Positives = 54/115 (46%)

Query:    72 GVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGGG-KD-IGLT 129
             G  G    G+   + +G  G G GGY +  G+ +   G  +GYD  + YGGG  D +G  
Sbjct:   184 GRGGRGGRGMGRGSGFG--GGGRGGYYNDYGYQNNGFGNNSGYDSQNGYGGGYSDQMGGG 241

Query:   130 NVQGGSYGDVRGRNRGHQVAGFS---TSYNKHESGNKATY-YDDGLGHGGSIQYG 180
                G  Y D  G   G Q +G+    T Y  + SG +++  Y  G G GGS  YG
Sbjct:   242 YGNGNGYSDF-GEGYGQQASGYGAMKTGYGNYSSGRQSSGPYPRGGGGGGSGGYG 295

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

DICTYBASE|DDB_G0292870 pex13 "peroxin 13" [Dictyostelium discoideum (taxid:44689)]

 Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 44/146 (30%), Positives = 58/146 (39%)

Query:    57 GVWGVNGAYTGAYNTGVNGLSNNGIQALNTYGDRGYGAGGYTDANGFYHGNLGTKNGYDV 116
             GV G +G Y  +Y  G     ++G    + YG   YG+GG    +G Y  +L    GY  
Sbjct:    94 GVGGSSG-YRSSYGGGYRDSYSSGGYGSSGYGS-SYGSGG----SGGYGSSLYGGGGYSS 147

Query:   117 GHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQVAGFSTSYNKHESGNKATYYDDGLGHGGS 176
             G  YGG    G  +  GG YG   G   G    G  + Y     G   + Y  G G G  
Sbjct:   148 G-GYGGS---GYGSSYGGGYGSSYGSGYGSSYGG--SGYGSSYGGGYGSSYGGGYGGGYG 201

Query:   177 IQYGSKDHRSRDGVGNAFGGAYHDAH 202
               YG + + + DG G A        H
Sbjct:   202 GGYGQRGYDNMDGKGGALQSVVSSGH 227

GO:0016560 "protein import into peroxisome matrix, docking" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005779 "integral to peroxisomal membrane" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

UNIPROTKB|F1PB61 TAF15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 47/141 (33%), Positives = 59/141 (41%)

Query:    57 GVWGVNGAYTGAYNTGVNGLSNNGIQALNTYG-DRGYGAGGYTDANGFYHGNLGTKNGYD 115
             G +G + +  G Y    +G    G ++   YG DRG G GG  D  G Y G+ G   G D
Sbjct:   424 GGYGGDRSGGGGYGGDRSGGGYGGDRSGGGYGGDRGGGYGG--DRGGGYGGDRGGGYGGD 481

Query:   116 VGHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQVAGFSTSYNKHESGNKATYYDDGLGHGG 175
              G  YGG +  G    +GG YG  RG   G +  G    Y     G      D G G+GG
Sbjct:   482 RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRSGG---GYGGDRGGGGGYGGDRGGGYGG 538

Query:   176 SIQYGSKDHRSRDGVGNAFGG 196
               + G      R G G   GG
Sbjct:   539 D-RSGGGYGGDRGGYGGKMGG 558

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1924384 Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0" [Mus musculus (taxid:10090)]

 Score = 132 (51.5 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 40/109 (36%), Positives = 47/109 (43%)

Query:    88 GDRGYGAGGYTDANGFYHGNLGTKNGYDVGHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQ 147
             G  G G GG  D NG   G  G   GY+    YGG    G     GGSYG   G + G+ 
Sbjct:   198 GRGGGGGGGGRDQNGLAKGGGGGGGGYNSYGGYGGYGAYGGGGGGGGSYG---GSDYGNG 254

Query:   148 VAGFSTSYNKHESGNKATYYDDGLGHGGSIQYGSKDHRSRDGVGNAFGG 196
               GF  SY++H+S         G G GGS    S     R G G  +GG
Sbjct:   255 FGGFG-SYSQHQSSYGPMKSGGGGGGGGSWGGRSNSGPYRGGYGGGYGG 302

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006954 "inflammatory response" evidence=IDA

GO:0017091 "AU-rich element binding" evidence=ISO;IDA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IDA

GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IDA

UNIPROTKB|F1S187 LOC100518332 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 133 (51.9 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 51/154 (33%), Positives = 61/154 (39%)

Query:    57 GVWGVNGAYTGAYNTGVNGLSNNGIQALNTYGDR---GYGA----GGYT-DANGFYHGNL 108
             G  G  G Y G  + G  G   +G       GDR   GYG     GGY  D  G Y G+ 
Sbjct:   213 GRGGDRGGYGGDRSGGGYGGDRSGGGGYG--GDRSGGGYGGDRSGGGYGGDRGGGYGGDR 270

Query:   109 GTKNGYDVGHAYGGGKDIGLTNVQGGSYGDVRGRNRG-HQVAGFSTSYNKHESGNKATYY 167
             G   G D G  YGG +  G    +GG YG  RG   G  +  G+         G++  Y 
Sbjct:   271 GGGYGGDRGGGYGGDRSGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYG 330

Query:   168 DDGLGHGGSIQ---YGSKDHRSRDGVGNAFGGAY 198
              D  G+GG      YG  D  S  G G    G Y
Sbjct:   331 GDRGGYGGDRSGGGYGG-DRGSGSGYGGDRSGGY 363

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q92804 TAF15 "TATA-binding protein-associated factor 2N" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 5.6e-06, P = 5.6e-06
 Identities = 48/144 (33%), Positives = 64/144 (44%)

Query:    57 GVWGVNGAYTGAYNTGVNGLSNNGIQALNTYG-DRGYGAGGYT-DANGFYHGNLGTKNGY 114
             G  G  G Y G    G +     G ++   YG DR  G GGY+ D +G  +G   +  GY
Sbjct:   398 GYGGERG-YRGRGGRGGDRGGYGGDRSGGGYGGDRSSG-GGYSGDRSGGGYGGDRSGGGY 455

Query:   115 --DVGHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQVAGFSTSYNKHESGNKATYYDDGLG 172
               D G  YGG +  G    +GG YG  RG   G +  G+      +  G++  Y  D  G
Sbjct:   456 GGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGY-GGDRGGYGGDRGG 514

Query:   173 HGGSIQYGSKDHRSRDGVGNAFGG 196
             +GG  + G    RSR G G   GG
Sbjct:   515 YGGD-RGGYGGDRSRGGYGGDRGG 537

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=TAS

WB|WBGene00017484 F15E6.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 109 (43.4 bits), Expect = 8.2e-06, P = 8.2e-06
 Identities = 33/89 (37%), Positives = 38/89 (42%)

Query:    55 TPGVWGVN-GAYTGAYNTGVNGLSNNGIQALNTYGDRGYG-AGGYTDANGFYHGNLGTKN 112
             T   +G+N G   G      N   N G Q    YG  GYG  GGY    G+Y    G + 
Sbjct:    16 TAAQFGLNSGLGLGVGPARANANLNGGFQ--RGYGGNGYGNRGGYGQQGGYY----GQQG 69

Query:   113 GYDVGHAYGGGKDIGLTNVQGGSYGDVRG 141
             GY     YGG +  G    QGG YG  RG
Sbjct:    70 GYGQQGGYGGNQ--GYYGQQGGGYGGGRG 96

GO:0000003 "reproduction" evidence=IMP

UNIPROTKB|E9PSU5 E9PSU5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 129 (50.5 bits), Expect = 9.3e-06, P = 9.3e-06
 Identities = 45/133 (33%), Positives = 58/133 (43%)

Query:    57 GVWGVNGAYTGAYNTGVNGLSNNG--IQALNTYGDRG-YGAGG--YTDANGFYHGNLGTK 111
             G  G  G+Y G  + G NG   +G        Y  RG YG GG  Y +  G Y G  G  
Sbjct:   236 GGGGSRGSYGGG-DGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGAGGY 294

Query:   112 NGYDVGHAYGGGKDIGLTNVQGGSYGDVRGRNRGHQVAGFSTSYNKHESGNKA-TYYDDG 170
             +GY+ G  +GGG   G     GG+Y D  G   G Q + +         G  + + Y  G
Sbjct:   295 DGYNEGGNFGGGNYGG-----GGNYNDF-GNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG 348

Query:   171 LGHG-GSIQYGSK 182
              G G GS  YGS+
Sbjct:   349 YGSGSGSGGYGSR 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:2157572 Krtap19-2 "keratin associated protein 19-2" [Mus musculus (taxid:10090)]

 Score = 107 (42.7 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 46/145 (31%), Positives = 57/145 (39%)

Query:    60 GVNGAYTGAYNTGVNGLSN--NGIQALNT---YGDRGYGAGGYTDANGFYHGNLGTKNGY 114
             G +G     Y +   GL    N I+ L     YG  GYG+G Y    GF +G+ G   GY
Sbjct:     6 GYSGGLGYGYGSSFGGLGCGCNSIRRLGCGSGYGGFGYGSG-YGGFGGFGYGS-GY-GGY 62

Query:   115 DVGHAYGGGKDIGLTNVQGG-SYGDVRGRNRGHQVAGFSTSYNKHESGNKATYYDDGLGH 173
               G  YGG    G  +  GG  YG   G   G    G+ + Y  +  G+    Y  G G 
Sbjct:    63 GYGSGYGGFGGFGYGSGYGGFGYGSGYGGFGGF---GYGSGYGGYGYGSGFGGYGYGSGF 119

Query:   174 GGSIQYGSKDHRSRDGVGNAFGGAY 198
              G   YG    RS    G  F   Y
Sbjct:   120 RG---YGCGCRRSSCCGGYGFSSFY 141

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005882 "intermediate filament" evidence=IEA

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	334
pfam12881	328	pfam12881, NUT_N, NUT protein N terminus	8e-04

>gnl|CDD|221827 pfam12881, NUT_N, NUT protein N terminus

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 254 PALPVLPPAPVP-----YIPPPPVITPPVLPQSPVISGVFSPNPVITKNYQPYPS 303
            ALP LPPAP P     + PPPP++T    P +P++       P++T+   P  S
Sbjct: 19  AALPFLPPAPQPPDQPFWEPPPPLVTAGFSPGNPLVLSALPSMPLVTEGGGPGLS 73

This family includes the NUT protein. The gene encoding for NUT protein (Nuclear Testis protein) is found fused to BRD3 or BRD4 genes, in some aggressive types of carcinoma, due to chromosomal translocations. Proteins of the BRD family contain two bromodomains that bind transcriptionally active chromatin through associations with acetylated histones H3 and H4. Such proteins are crucial for the regulation of cell cycle progression. On the other hand, little is known about NUT protein. NUT is known to have a Nuclear Export Sequence (NES) as well as a Nuclear Localization Signal (NLS), both located towards the C-terminal end of the protein. A fused NUT-GFP protein showed either cytoplasmic or nuclear localization, suggesting that it is subject to nuclear/cytoplasmic shuttling. Consistent with this possibility, treatment with leptomycin B an inhibitor of CRM1-dependent nuclear export resulted in re-distribution of NUT-GFP to the nucleus. Inspection of NUT revealed a C-terminal sequence similar to known nuclear export sequences (NES) which are often regulated by phosphorylation. Length = 328

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00