Psyllid ID: psy5451

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
MSLVMKKNEEREALRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDEATNVSINHTGTQ
cccHHcHHHHHHHHHHHHHHHcccccccccccccccHHccccccccccccccccccEEEEEEEEEcccccEEEEEcccccccccccccccccEEEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccEEEEEcccccccEEEEEEEcccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHcccccccEEEEEEEEccccccccEEEEccccccccccHcccccEcEEEEEEEEcccccEEEEEEEEcccHHHHHHHHHHHHHccccHHHcccccEEEEEEEccccccccccccccEEEEEEccccccccEEEEEcccccccHcHcccccc
MSLVMKKNEEREALRGVIQQWNAnrldlfelsepndqwnanrldlfelsepnddlLFHGVMRfyfqdsgqKVATKCIRVASDATSQADLLFHGVMRfyfqdsgqKVATKCIRVASDATSQAVIETLIEKfrpdmrmlsvpeyalyeihengderklgtdekplLVQLNWHKDDREGRFLLRRIDeatnvsinhtgtq
mslvmkkneerEALRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRFYFQDSGQKVATKCIRvasdatsqAVIETLIekfrpdmrmlSVPEYALYEIHengderklgtdeKPLLVqlnwhkddreGRFLLrrideatnvsinhtgtq
MSLVMKKNEEREALRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDEATNVSINHTGTQ
*************LRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENG****LGTDEKPLLVQLNWHKDDREGRFLLRRIDE************
******************QQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQD***********************FHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRR***************
MSLVMKKNEEREALRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDEATNVSINHTGTQ
*****KKNEEREALRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRI**************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLVMKKNEEREALRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDEATNVSINHTGTQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query197 2.2.26 [Sep-21-2011]
Q9QZQ1 1820 Afadin OS=Mus musculus GN yes N/A 0.578 0.062 0.546 4e-38
P55196 1824 Afadin OS=Homo sapiens GN no N/A 0.578 0.062 0.546 4e-38
O35889 1829 Afadin OS=Rattus norvegic yes N/A 0.578 0.062 0.546 5e-38
>sp|Q9QZQ1|AFAD_MOUSE Afadin OS=Mus musculus GN=Mllt4 PE=1 SV=3 Back     alignment and function desciption
 Score =  157 bits (397), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 99/150 (66%), Gaps = 36/150 (24%)

Query: 38  WNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRF 97
           WNANRLDLFE+S+P +DL F                                  HGVMRF
Sbjct: 20  WNANRLDLFEISQPTEDLEF----------------------------------HGVMRF 45

Query: 98  YFQD-SGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKL 156
           YFQD +    ATKCIRV+S AT+Q VIETL EKFRPDMRMLS P+Y+LYE+H +G ER+L
Sbjct: 46  YFQDKAAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSG-ERRL 104

Query: 157 GTDEKPLLVQLNWHKDDREGRFLLRRIDEA 186
             DEKPL+VQLNW+KDDREGRF+L+  ++A
Sbjct: 105 DIDEKPLVVQLNWNKDDREGRFVLKNENDA 134
Belongs to an adhesion system, probably together with the E-cadherin-catenin system, which plays a role in the organization of homotypic, interneuronal and heterotypic cell-cell adherens junctions (AJs). Nectin- and actin-filament-binding protein that connects nectin to the actin cytoskeleton. May play a key role in the organization of epithelial structures of the embryonic ectoderm.
Mus musculus (taxid: 10090)
>sp|P55196|AFAD_HUMAN Afadin OS=Homo sapiens GN=MLLT4 PE=1 SV=3 Back     alignment and function description
>sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
242025058 1961 afadin, putative [Pediculus humanus corp 0.852 0.085 0.609 3e-70
328715607 1909 PREDICTED: afadin-like [Acyrthosiphon pi 0.700 0.072 0.654 3e-61
383865464 2805 PREDICTED: uncharacterized protein LOC10 0.685 0.048 0.655 3e-59
350405941 2204 PREDICTED: hypothetical protein LOC10074 0.685 0.061 0.650 4e-59
307200209 2100 Afadin [Harpegnathos saltator] 0.685 0.064 0.645 7e-59
328792941 2287 PREDICTED: hypothetical protein LOC41016 0.685 0.059 0.650 7e-59
345480028 2043 PREDICTED: afadin-like [Nasonia vitripen 0.649 0.062 0.659 7e-58
307176324 380 Afadin [Camponotus floridanus] 0.670 0.347 0.655 3e-57
322801603 341 hypothetical protein SINV_03689 [Solenop 0.670 0.387 0.655 7e-57
390178863 1887 GA15389, isoform B [Drosophila pseudoobs 0.685 0.071 0.580 6e-51
>gi|242025058|ref|XP_002432943.1| afadin, putative [Pediculus humanus corporis] gi|212518452|gb|EEB20205.1| afadin, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 151/228 (66%), Gaps = 60/228 (26%)

Query: 5   MKKNEEREALRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFY 64
           MKK+ EREALR VIQQWNAN                 RLDLFELSEPN++L FHGVMRFY
Sbjct: 8   MKKDAEREALRAVIQQWNAN-----------------RLDLFELSEPNENLEFHGVMRFY 50

Query: 65  FQDSGQKVATKCIRVASDATSQA------------------------------------- 87
           F DSGQ++ATKCIRVASDAT  A                                     
Sbjct: 51  FHDSGQRIATKCIRVASDATVTAVIETLIEKFRPDMRMLSVPEYALYVTHENRDERRLNP 110

Query: 88  ------DLLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPE 141
                 +L FHGVMRFYF DSGQ++ATKCIRVASDAT  AVIETLIEKFRPDMRMLSVPE
Sbjct: 111 DEKPLLNLEFHGVMRFYFHDSGQRIATKCIRVASDATVTAVIETLIEKFRPDMRMLSVPE 170

Query: 142 YALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDEATNV 189
           YALY  HEN DER+L  DEKPLLVQLNWHKDDREGRFLL+RID+ T +
Sbjct: 171 YALYVTHENRDERRLNPDEKPLLVQLNWHKDDREGRFLLKRIDDKTKM 218

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328715607|ref|XP_001944877.2| PREDICTED: afadin-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383865464|ref|XP_003708193.1| PREDICTED: uncharacterized protein LOC100877377 [Megachile rotundata] Back     alignment and taxonomy information
>gi|350405941|ref|XP_003487601.1| PREDICTED: hypothetical protein LOC100743701 [Bombus impatiens] Back     alignment and taxonomy information
>gi|307200209|gb|EFN80503.1| Afadin [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328792941|ref|XP_393645.4| PREDICTED: hypothetical protein LOC410161 [Apis mellifera] Back     alignment and taxonomy information
>gi|345480028|ref|XP_001605722.2| PREDICTED: afadin-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307176324|gb|EFN65943.1| Afadin [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322801603|gb|EFZ22244.1| hypothetical protein SINV_03689 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|390178863|ref|XP_003736747.1| GA15389, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859616|gb|EIM52820.1| GA15389, isoform B [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
FB|FBgn0259212 2051 cno "canoe" [Drosophila melano 0.532 0.051 0.794 6.7e-49
UNIPROTKB|E9PFY5 250 MLLT4 "Afadin" [Homo sapiens ( 0.502 0.396 0.7 9.5e-34
UNIPROTKB|F8W9I4 247 MLLT4 "Afadin" [Homo sapiens ( 0.502 0.400 0.7 9.5e-34
UNIPROTKB|F1SBY5 1798 MLLT4 "Uncharacterized protein 0.522 0.057 0.682 2.9e-32
UNIPROTKB|F1LT10 1772 Mllt4 "Afadin" [Rattus norvegi 0.502 0.055 0.7 3.6e-32
UNIPROTKB|F1PSU6 1789 MLLT4 "Uncharacterized protein 0.502 0.055 0.7 3.7e-32
UNIPROTKB|F1N2X7 1761 MLLT4 "Uncharacterized protein 0.502 0.056 0.69 5.9e-32
UNIPROTKB|E1C5E4 1835 MLLT4 "Uncharacterized protein 0.477 0.051 0.726 7.9e-32
UNIPROTKB|E1BYF5 1842 MLLT4 "Uncharacterized protein 0.477 0.051 0.726 8e-32
ZFIN|ZDB-GENE-050419-52 1912 mllt4 "myeloid/lymphoid or mix 0.477 0.049 0.736 8.4e-32
FB|FBgn0259212 cno "canoe" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 439 (159.6 bits), Expect = 6.7e-49, Sum P(2) = 6.7e-49
 Identities = 85/107 (79%), Positives = 93/107 (86%)

Query:    83 ATSQAD--LLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVP 140
             A S+ D  LLFHGVMRFYFQD+GQKVATKCIRVASDAT   VI+TLIEKFRPDMRMLSVP
Sbjct:    29 ALSEPDENLLFHGVMRFYFQDAGQKVATKCIRVASDATVTDVIDTLIEKFRPDMRMLSVP 88

Query:   141 EYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLLRRIDEAT 187
              YALYE+H NG+ER+L  DEKPLLVQLNWH DDREGRFLL+ ID+ T
Sbjct:    89 NYALYEVHANGEERRLNADEKPLLVQLNWHIDDREGRFLLKNIDQKT 135
GO:0003779 "actin binding" evidence=ISS
GO:0005912 "adherens junction" evidence=NAS;IDA;TAS
GO:0007254 "JNK cascade" evidence=NAS
GO:0007391 "dorsal closure" evidence=IMP;TAS
GO:0007265 "Ras protein signal transduction" evidence=TAS
GO:0005915 "zonula adherens" evidence=TAS
GO:0007219 "Notch signaling pathway" evidence=TAS
GO:0007394 "dorsal closure, elongation of leading edge cells" evidence=NAS
GO:0046328 "regulation of JNK cascade" evidence=IGI;IMP;NAS
GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS
GO:0016318 "ommatidial rotation" evidence=IMP
GO:0005938 "cell cortex" evidence=IDA
GO:0048749 "compound eye development" evidence=IGI
GO:0005926 "connecting hemi-adherens junction" evidence=IDA
GO:0048730 "epidermis morphogenesis" evidence=IMP
GO:0048598 "embryonic morphogenesis" evidence=IMP
UNIPROTKB|E9PFY5 MLLT4 "Afadin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8W9I4 MLLT4 "Afadin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBY5 MLLT4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1LT10 Mllt4 "Afadin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PSU6 MLLT4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N2X7 MLLT4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C5E4 MLLT4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYF5 MLLT4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050419-52 mllt4 "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O35889AFAD_RATNo assigned EC number0.54660.57860.0623yesN/A
Q9QZQ1AFAD_MOUSENo assigned EC number0.54660.57860.0626yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
cd01782112 cd01782, AF6_RA_repeat1, Ubiquitin domain of AT-6, 2e-62
cd0176887 cd01768, RA, RA (Ras-associating) ubiquitin domain 8e-21
smart0031490 smart00314, RA, Ras association (RalGDS/AF-6) doma 5e-20
pfam0078887 pfam00788, RA, Ras association (RalGDS/AF-6) domai 5e-16
cd0177896 cd01778, RASSF1_RA, Ubiquitin-like domain of RASSF 1e-05
cd0178487 cd01784, rasfadin_RA, Ubiquitin-like domain of Ras 3e-04
>gnl|CDD|176377 cd01782, AF6_RA_repeat1, Ubiquitin domain of AT-6, first repeat Back     alignment and domain information 
 Score =  188 bits (479), Expect = 2e-62
 Identities = 86/146 (58%), Positives = 98/146 (67%), Gaps = 34/146 (23%)

Query: 38  WNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRF 97
           WNANRLDLF LS P +DL FHGVMRFYFQD G+KVATKCIRV+S AT++           
Sbjct: 1   WNANRLDLFHLSYPTEDLEFHGVMRFYFQDGGEKVATKCIRVSSTATTRD---------- 50

Query: 98  YFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLG 157
                                   VI+TL EKFRPDMRMLS P Y+LYE+HENG+ER+L 
Sbjct: 51  ------------------------VIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLL 86

Query: 158 TDEKPLLVQLNWHKDDREGRFLLRRI 183
            DEKPL+VQLNWHKDDREGRFLL+  
Sbjct: 87  DDEKPLVVQLNWHKDDREGRFLLKND 112

The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements. Length = 112
>gnl|CDD|176363 cd01768, RA, RA (Ras-associating) ubiquitin domain Back     alignment and domain information
>gnl|CDD|214612 smart00314, RA, Ras association (RalGDS/AF-6) domain Back     alignment and domain information
>gnl|CDD|201444 pfam00788, RA, Ras association (RalGDS/AF-6) domain Back     alignment and domain information
>gnl|CDD|176373 cd01778, RASSF1_RA, Ubiquitin-like domain of RASSF1 tumour supproessor protein Back     alignment and domain information
>gnl|CDD|176379 cd01784, rasfadin_RA, Ubiquitin-like domain of Rasfadin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 197
cd01782112 AF6_RA_repeat1 Ubiquitin domain of AT-6, first rep 100.0
KOG1892|consensus 1629 100.0
cd0177896 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour s 99.96
cd0178487 rasfadin_RA Ubiquitin-like domain of Rasfadin. ras 99.94
KOG4239|consensus348 99.79
smart0031490 RA Ras association (RalGDS/AF-6) domain. RasGTP ef 99.77
PF0078893 RA: Ras association (RalGDS/AF-6) domain; InterPro 99.76
cd0176887 RA RA (Ras-associating) ubiquitin domain. The RA ( 99.75
cd01782112 AF6_RA_repeat1 Ubiquitin domain of AT-6, first rep 99.53
KOG1892|consensus 1629 99.41
cd01781100 AF6_RA_repeat2 Ubiquitin domain of AT-6, second re 98.65
cd0178397 DAGK_delta_RA Ubiquitin-like domain of Diacylgylce 98.22
cd0178785 GRB7_RA RA (RAS-associated like) domain of Grb7. G 98.13
cd0177687 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin 97.7
cd01779105 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb 97.68
cd0177597 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase 97.0
cd0178698 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_ 96.98
cd0178093 PLC_epsilon_RA Ubiquitin-like domain of Phosphatid 96.95
cd0177787 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin 96.46
cd0177896 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour s 95.86
cd0178585 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PD 95.69
KOG1574|consensus 375 95.62
KOG3751|consensus 622 95.22
smart00295 207 B41 Band 4.1 homologues. Also known as ezrin/radix 95.2
PF0078893 RA: Ras association (RalGDS/AF-6) domain; InterPro 94.53
cd0015387 RalGDS_RA Ubiquitin domain of RalGDS-like factor ( 93.25
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 93.21
smart0031490 RA Ras association (RalGDS/AF-6) domain. RasGTP ef 92.19
cd0176887 RA RA (Ras-associating) ubiquitin domain. The RA ( 91.9
PF14847105 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 85.86
KOG3542|consensus 1283 84.92
PF0937980 FERM_N: FERM N-terminal domain ; InterPro: IPR0189 84.48
KOG2320|consensus651 83.1
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat Back     alignment and domain information 
Probab=100.00  E-value=3.3e-61  Score=377.74  Aligned_cols=112  Identities=77%  Similarity=1.263  Sum_probs=109.1

Q ss_pred             hhccccccccccCCCccccccccceeeccCCCCccccceeEEEEEecccccccceeeEecccccccchheeccceeeeee
Q psy5451          21 WNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQADLLFHGVMRFYFQ  100 (197)
Q Consensus        21 wn~~rldlf~l~~~~~~~~~~~~~~f~~~~~~~~l~f~Gvmrf~~qd~~~~~~tk~irvss~~~sqd~~lF~Gvmr~~~~  100 (197)
                      |||||||||+                 ||+|++|||||||||||||                                  
T Consensus         1 wn~~rldlf~-----------------~s~p~e~lef~gvmrf~~q----------------------------------   29 (112)
T cd01782           1 WNANRLDLFH-----------------LSYPTEDLEFHGVMRFYFQ----------------------------------   29 (112)
T ss_pred             CCccccceEe-----------------ecCCCcccEEeeEEEEEEE----------------------------------
Confidence            9999999999                 9999999999999999999                                  


Q ss_pred             cCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccCCCccccCCCCCceeeeeeccCCCceeeeEe
Q psy5451         101 DSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGDERKLGTDEKPLLVQLNWHKDDREGRFLL  180 (197)
Q Consensus       101 d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~nGe~RkL~~~E~PLlvqL~wg~ddrEgrFvL  180 (197)
                      |+|+|||||||||||+|||+|||++|++||+||+||+++|+||||++|++|++|||+++|+||++||+|||||+||||||
T Consensus        30 d~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d~E~PL~~RL~w~~~dre~~FvL  109 (112)
T cd01782          30 DGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLDDEKPLVVQLNWHKDDREGRFLL  109 (112)
T ss_pred             cCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCCcCCCeEEeeccCCCCceeEEEe
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eec
Q psy5451         181 RRI  183 (197)
Q Consensus       181 k~~  183 (197)
                      |++
T Consensus       110 k~~  112 (112)
T cd01782         110 KND  112 (112)
T ss_pred             ccC
Confidence            974

The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
>KOG1892|consensus Back     alignment and domain information
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein Back     alignment and domain information
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin Back     alignment and domain information
>KOG4239|consensus Back     alignment and domain information
>smart00314 RA Ras association (RalGDS/AF-6) domain Back     alignment and domain information
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals [] Back     alignment and domain information
>cd01768 RA RA (Ras-associating) ubiquitin domain Back     alignment and domain information
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat Back     alignment and domain information
>KOG1892|consensus Back     alignment and domain information
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat Back     alignment and domain information
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK) Back     alignment and domain information
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7 Back     alignment and domain information
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector Back     alignment and domain information
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA Back     alignment and domain information
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase Back     alignment and domain information
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA Back     alignment and domain information
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase Back     alignment and domain information
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27) Back     alignment and domain information
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein Back     alignment and domain information
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA Back     alignment and domain information
>KOG1574|consensus Back     alignment and domain information
>KOG3751|consensus Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals [] Back     alignment and domain information
>cd00153 RalGDS_RA Ubiquitin domain of RalGDS-like factor (RLF) and related proteins Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>smart00314 RA Ras association (RalGDS/AF-6) domain Back     alignment and domain information
>cd01768 RA RA (Ras-associating) ubiquitin domain Back     alignment and domain information
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain Back     alignment and domain information
>KOG2320|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
3ddc_B163 RAS association domain-containing family protein; 4e-25
1wgr_A100 Growth factor receptor-bound protein 7; RA domain, 4e-12
1wxa_A116 Afadin, AF-6 protein; RAS-binding domain, ubiquiti 3e-10
3ec8_A166 Putative uncharacterized protein FLJ10324; beta ba 3e-08
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus} Length = 163 Back     alignment and structure
 Score = 94.8 bits (235), Expect = 4e-25
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 15/159 (9%)

Query: 30  ELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDS--GQKVATKCIRVASDATSQA 87
           E+ +  D +N+       +   ++D  + G ++ + +        A    +   DA  + 
Sbjct: 11  EIKQKIDSYNSREKHCLGMKL-SEDGTYTGFIKVHLKLRRPVTVPAGIRPQSIYDAIKEV 69

Query: 88  D--LLFHGVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALY 145
           +          FY        A K + ++S  T   VI+ L++KF          ++AL+
Sbjct: 70  NPAATTDKRTSFYLPLD----AIKQMHISSTTTVSEVIQGLLDKFMVVDNPQ---KFALF 122

Query: 146 EIHENGDE---RKLGTDEKPLLVQLNWHKDDREGRFLLR 181
           +      +   +KL   + PL ++L    D     F+L+
Sbjct: 123 KRIHKDGQVLFQKLSIADYPLYLRLLAGPDTDVLSFVLK 161
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5 Length = 100 Back     alignment and structure
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5 Length = 116 Back     alignment and structure
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens} Length = 166 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
3ddc_B163 RAS association domain-containing family protein; 99.96
1wxa_A116 Afadin, AF-6 protein; RAS-binding domain, ubiquiti 99.11
3tca_A 291 Amyloid beta A4 precursor protein-binding family 1 98.92
1wgr_A100 Growth factor receptor-bound protein 7; RA domain, 98.87
2c5l_C117 Phosphoinositide-specific phospholipase C PLC-epsi 98.36
3hk0_A 256 Growth factor receptor-bound protein 10; GRB10, RA 98.1
4gmv_A 281 RAS-associated and pleckstrin homology domains-CO 98.06
2bye_A110 Phospholipase C, epsilon 1; RAS association domain 97.81
2cs4_A95 Protein C12ORF2; GTP binding, ubiquitin fold, stru 97.45
3ec8_A166 Putative uncharacterized protein FLJ10324; beta ba 96.52
2uwq_A86 Apoptosis-stimulating of P53 protein 2; ASPP2, ubi 96.35
1lfd_A87 Ralgds; RAL, effector interaction; HET: GNP; 2.10A 95.66
1rax_A115 Protein (RA-domain of RAL guanosine dissociation s 95.09
1rlf_A90 RLF, RLF-RBD; signal transduction protein; NMR {Mu 94.93
1ef5_A103 RGL; RAS-binding domain, RAS, RBD, RA, riken struc 94.69
3kh0_A140 Ralgds, ralgef, RAL guanine nucleotide dissociatio 94.08
1wgy_A104 RAP guanine nucleotide exchange factor 5; ubiquiti 93.32
2dhz_A120 RAP guanine nucleotide exchange factor (GEF)- like 92.56
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 92.17
2al6_A 375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 89.12
3ivf_A 371 Talin-1; FERM domain, cell membrane, cell projecti 87.91
1ef1_A 294 Moesin; membrane, FERM domain, tail domain, membra 87.51
4dxa_B 322 KREV interaction trapped protein 1; GTPase, FERM, 83.12
4eku_A 392 Protein-tyrosine kinase 2-beta; proline-rich tyros 82.47
2ylm_A530 Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 81.67
3au4_A 555 Myosin-X; protein-protein complex, motor protein c 81.22
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus} Back     alignment and structure
Probab=99.96  E-value=3.1e-30  Score=212.05  Aligned_cols=141  Identities=22%  Similarity=0.345  Sum_probs=108.7

Q ss_pred             HHHHHHHHhhhccccccccccCCCccccccccceeeccCCCCccccceeEEEEEecccccccceeeEeccccccc---ch
Q psy5451          12 EALRGVIQQWNANRLDLFELSEPNDQWNANRLDLFELSEPNDDLLFHGVMRFYFQDSGQKVATKCIRVASDATSQ---AD   88 (197)
Q Consensus        12 ~~l~~~i~~wn~~rldlf~l~~~~~~~~~~~~~~f~~~~~~~~l~f~Gvmrf~~qd~~~~~~tk~irvss~~~sq---d~   88 (197)
                      +.+..-|+++|+.--+-+.             |-  +   ++|-.|.|.|++-++      ++|+|.|.......   |.
T Consensus        10 ~ei~~kI~~YN~~~~~~l~-------------M~--l---~~dgsytGFIkV~l~------L~RPv~v~~~~~~~s~~~~   65 (163)
T 3ddc_B           10 QEIKQKIDSYNSREKHCLG-------------MK--L---SEDGTYTGFIKVHLK------LRRPVTVPAGIRPQSIYDA   65 (163)
T ss_dssp             HHHHHHHHHHHHTSCGGGS-------------CE--E---CGGGCEEEEEEEEEE------EEEEECCC-----------
T ss_pred             HHHHHHHHHHHHhcccCce-------------EE--E---CCCCcccceEEEEEE------eccCCcCCCCcCCcccccc
Confidence            5677789999987765544             11  1   467789999999999      99999998543211   11


Q ss_pred             hee---ccce----eeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEE-EccCCC--ccccCC
Q psy5451          89 LLF---HGVM----RFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYE-IHENGD--ERKLGT  158 (197)
Q Consensus        89 ~lF---~Gvm----r~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYe-vH~nGe--~RkL~~  158 (197)
                      +-=   ++.+    -|| --   +-++|||||||+|||+|||++||+||++++   ++.+||||+ +|++|+  .|||++
T Consensus        66 ~~~~~~~~~~~~~TSff-lP---~gs~k~v~VsS~tTt~eVI~~LL~KFkV~d---nP~kFALye~vh~~gev~~RKL~d  138 (163)
T 3ddc_B           66 IKEVNPAATTDKRTSFY-LP---LDAIKQMHISSTTTVSEVIQGLLDKFMVVD---NPQKFALFKRIHKDGQVLFQKLSI  138 (163)
T ss_dssp             --------------CEE-EE---EEEEEEEEEETTCCHHHHHHHHHHHTTCCS---CGGGEEEEEEEEETTEEEEEECCT
T ss_pred             ccccccccccccceeEE-CC---CCceEEEEEccCCcHHHHHHHHHHHhcccC---ChhheEEEEEEccCCcEEEEECCC
Confidence            110   1110    122 12   469999999999999999999999999887   456999999 999999  999999


Q ss_pred             CCCceeeeeeccCCCceeeeEeeec
Q psy5451         159 DEKPLLVQLNWHKDDREGRFLLRRI  183 (197)
Q Consensus       159 ~E~PLlvqL~wg~ddrEgrFvLk~~  183 (197)
                      +|+||++||+|||++++++|+||+|
T Consensus       139 ~E~PL~lrL~~Gp~e~~~~fvLkEn  163 (163)
T 3ddc_B          139 ADYPLYLRLLAGPDTDVLSFVLKEN  163 (163)
T ss_dssp             TCCHHHHHHHHCSCTTTCEEEEEEC
T ss_pred             cCcCHhHHhhcCCCCCeEEEEeccC
Confidence            9999999999999999999999987
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5 Back     alignment and structure
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus} Back     alignment and structure
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A Back     alignment and structure
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Back     alignment and structure
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A Back     alignment and structure
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>3ec8_A Putative uncharacterized protein FLJ10324; beta barrel, helix, structural genomics, structural genomics consortium, SGC, cell adhesion; 2.60A {Homo sapiens} Back     alignment and structure
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens} Back     alignment and structure
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A Back     alignment and structure
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5 Back     alignment and structure
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5 Back     alignment and structure
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A Back     alignment and structure
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5 Back     alignment and structure
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Back     alignment and structure
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 197
d1wxaa1103 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [T 6e-27
d1wgra_100 d.15.1.5 (A:) Growth factor receptor-bound protein 5e-17
d2byea1109 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Huma 4e-07
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Length = 103 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Afadin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.5 bits (240), Expect = 6e-27
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 93  GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHENGD 152
           G +R Y       +  K I +++  T+   +   +EK+   +   +  +Y +  +     
Sbjct: 3   GTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYG--LEKENPKDYCIARVMLPPG 60

Query: 153 ----------ERKLGTDEKPLLVQLNWHKDDREGRFLLRR 182
                     E  L  DE PL +   W  D     F L+R
Sbjct: 61  AQHSDERGAKEIILDDDECPLQIFREWPSDKGILVFQLKR 100
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 100 Back     information, alignment and structure
>d2byea1 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
d1wxaa1103 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.74
d1wgra_100 Growth factor receptor-bound protein 7, GRB-7 {Hum 99.7
d2byea1109 Phospholipase C-epsilon-1 {Human (Homo sapiens) [T 98.93
d2c5lc1106 Phospholipase C-epsilon-1 {Human (Homo sapiens) [T 97.52
d2cs4a184 Ras association domain-containing protein 8 {Human 97.25
d1lfda_87 Ral guanosine-nucleotide exchange factor, RalGDS { 95.54
d1k8rb_95 Protein kinase byr2 {Fission yeast (Schizosaccharo 94.89
d1ef5a_88 Rgl {Mouse (Mus musculus) [TaxId: 10090]} 94.53
d1rlfa_90 RalGDS-like factor, Rlf {Mouse (Mus musculus) [Tax 93.03
d1wgya_104 Rap guanine nucleotide exchange factor 5, RapGEF5 92.58
d1wgra_100 Growth factor receptor-bound protein 7, GRB-7 {Hum 90.47
d1wxaa1103 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 87.18
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Afadin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=6.3e-19  Score=128.80  Aligned_cols=90  Identities=22%  Similarity=0.354  Sum_probs=76.9

Q ss_pred             cceeeeeecCCceeeeeeEEeccccchHHHHHHHHhhcCCCccCCCCCceeeEEEccC----------CCccccCCCCCc
Q psy5451          93 GVMRFYFQDSGQKVATKCIRVASDATSQAVIETLIEKFRPDMRMLSVPEYALYEIHEN----------GDERKLGTDEKP  162 (197)
Q Consensus        93 Gvmr~~~~d~g~k~aTKcIRVsSt~TT~dVI~~LleKFrpdnRmLs~pefaLYevH~n----------Ge~RkL~~~E~P  162 (197)
                      |++|+|..+-...+.-|+|+|++++|+++||..+|+||..+..  ++.+|+|+++..+          +.+|+|.++|+|
T Consensus         3 G~lkVy~~~l~~~~~yk~l~vs~~tTa~eVI~~~L~k~~l~~~--~~~~y~L~ev~~~~~~~~~~~~~~~eR~L~~~E~P   80 (103)
T d1wxaa1           3 GTLRIYADSLKPNIPYKTILLSTTDTADFAVAESLEKYGLEKE--NPKDYCIARVMLPPGAQHSDERGAKEIILDDDECP   80 (103)
T ss_dssp             CEEEECCTTTCSSSCCEEEECCSSCCHHHHHHHHHHHHTCSSS--CTTTEEEEEEECCSSCCSSSSTTCEEECCCSSCCH
T ss_pred             cEEEEEcCccCCCCCeEEEEECCCCcHHHHHHHHHHHhCCCCC--ChhhEEEEEEEecCCCcccccCCcEEEEcCCCCCH
Confidence            6777776666667789999999999999999999999996542  4669999998643          237999999999


Q ss_pred             eeeeeeccCCCceeeeEeeecC
Q psy5451         163 LLVQLNWHKDDREGRFLLRRID  184 (197)
Q Consensus       163 LlvqL~wg~ddrEgrFvLk~~~  184 (197)
                      |.+|.+|+++..++||+||..+
T Consensus        81 L~l~~~W~~~~~~~rF~LrrkP  102 (103)
T d1wxaa1          81 LQIFREWPSDKGILVFQLKRRP  102 (103)
T ss_dssp             HHHHHTCCGGGCCEEEEEEECC
T ss_pred             HHHHHhCccCCCceEEEEecCC
Confidence            9999999999889999999863
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2byea1 d.15.1.5 (A:2-110) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c5lc1 d.15.1.5 (C:2134-2239) Phospholipase C-epsilon-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cs4a1 d.15.1.5 (A:8-91) Ras association domain-containing protein 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lfda_ d.15.1.5 (A:) Ral guanosine-nucleotide exchange factor, RalGDS {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1ef5a_ d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure