Psyllid ID: psy5527

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFETSPSEEDSSEDNESNTSPPGPSPTGR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccHHHHHHHHHHcccccccEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mewvnlnpmilstfgslrvhedetnitenDRVEVLQDIYNKLcfedrttrpfrraigFTQVVKKDLLPllistkddstTFDLCIKILMNltipvecllpidslcktdegrNTIYELNWLLTSCKEAFLESKITRCIIEHIKKftdnesethVTARICDCINNCLVLLRNIlhipevrggvttshHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWfetspseedssednesntsppgpsptgr
Flexible Loop (DISEMBL)
MEWVNLNPMILstfgslrvhedetnitendrvevLQDIYNKLcfedrttrpfrraigftqvvKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIkkftdnesetHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFETSPseedssednesntsppgpsptgr
Low Complexity Region (SEG)
MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFetspseedssednesntsppgpsptgR
Disordered region (IsUnstruct)
**WVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFE**************************
Disordered Region (DISOPRED)
MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDS****DEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKF**************DCINNCLVLLRNILHIPEVR****TSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNT************************************
Disordered Region (DISEMBL)
MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFE**************************
Disordered Region (DISPRO)
MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFET*************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFETSPSEEDSSEDNESNTSPPGPSPTGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
P49021	1421	Protein timeless OS=Droso	yes	N/A	0.951	0.180	0.496	7e-66
O17482	1343	Protein timeless OS=Droso	N/A	N/A	0.951	0.190	0.490	3e-64
O44431	676	Protein timeless (Fragmen	N/A	N/A	0.353	0.140	0.596	8e-26
Q9UNS1	1208	Protein timeless homolog	yes	N/A	0.810	0.180	0.304	2e-19
Q9Z2Y1	1205	Protein timeless homolog	yes	N/A	0.814	0.181	0.309	3e-18
Q9R1X4	1197	Protein timeless homolog	yes	N/A	0.814	0.182	0.305	9e-18

>sp|P49021|TIM_DROME Protein timeless OS=Drosophila melanogaster GN=tim PE=1 SV=2

 Score =  250 bits (639), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 135/272 (49%), Positives = 181/272 (66%), Gaps = 16/272 (5%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           M+W+   P + S F SL   E +T +   + + +L++I  KL +ED+T R FRRAIGF Q
Sbjct: 24  MDWLLATPQLYSAFSSLGCLEGDTYVVNPNALAILEEINYKLTYEDQTLRTFRRAIGFGQ 83

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
            V+ DL+PLL + KDD+   +  I+IL+NLT+PVECL  +D + +TD GR+TI+ELN LL
Sbjct: 84  NVRSDLIPLLENAKDDAV-LESVIRILVNLTVPVECLFSVDVMYRTDVGRHTIFELNKLL 142

Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGV 180
            + KEAF E++ T+ ++E++K     ES+  ++   CD INNCL+LLRNILHIPE     
Sbjct: 143 YTSKEAFTEARSTKSVVEYMKHIL--ESDPKLSPHKCDQINNCLLLLRNILHIPETHAHC 200

Query: 181 TT----------SHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQH 230
                       S  N ILWNLF    DK+L  L++   R   W +++VQLIAL+YKDQH
Sbjct: 201 VMPMMQSMPHGISMQNTILWNLFIQSIDKLLLYLMTCPQR-AFWGVTMVQLIALIYKDQH 259

Query: 231 VNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
           V+TLQKLL+LWFE S SE  SSEDNESNTSPP
Sbjct: 260 VSTLQKLLSLWFEASLSE--SSEDNESNTSPP 289

Required for the production of circadian rhythms. The biological cycle depends on the rhythmic formation and nuclear localization of the TIM-PER complex. Light induces the degradation of TIM, which promotes elimination of PER. Nuclear activity of the heterodimer coordinatively regulates PER and TIM transcription through a negative feedback loop. Behaves as a negative element in circadian transcriptional loop. Does not appear to bind DNA, suggesting indirect transcriptional inhibition.
Drosophila melanogaster (taxid: 7227)

>sp|O17482|TIM_DROVI Protein timeless OS=Drosophila virilis GN=tim PE=2 SV=1

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 134/273 (49%), Positives = 181/273 (66%), Gaps = 17/273 (6%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           M+W+   P + S F SL      T +   + + +L++I +KL +ED+T R FRRAIGF Q
Sbjct: 1   MDWLLATPQLQSVFSSLGSLVGGTYVVSPNALAILEEINHKLTYEDQTLRTFRRAIGFGQ 60

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
            V+ DL+PLL + KDD+   +  I+IL+NLT+PVECL  +D + +T+ GR+TI+ELN LL
Sbjct: 61  NVRVDLIPLLENAKDDAV-LESVIRILVNLTVPVECLFSVDLMYRTEVGRHTIFELNKLL 119

Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRG-- 178
            + KEAF + K T+ ++E++K     ES+  ++   CD INNCL+LLRNILHIPE     
Sbjct: 120 YNSKEAFTDPKSTKSVVEYMKHIL--ESDPKLSPHKCDQINNCLLLLRNILHIPETHAHF 177

Query: 179 ---------GVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229
                    G   S  N ILWNLF    DK+L  L++   R  LW +++VQLIAL+YKDQ
Sbjct: 178 LMPRLQPGSGHQVSMQNTILWNLFIQSIDKLLLYLMTCPQR-SLWGVTMVQLIALIYKDQ 236

Query: 230 HVNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
           HV+TLQKLLNLWFE S SE  SS+DNESNT+PP
Sbjct: 237 HVSTLQKLLNLWFEASLSE--SSDDNESNTTPP 267

Required for the production of circadian rhythms. The biological cycle depends on the rhythmic formation and nuclear localization of the TIM-PER complex. Light induces the degradation of TIM, which promotes elimination of PER. Nuclear activity of the heterodimer coordinatively regulates PER and TIM transcription through a negative feedback loop. Behaves as a negative element in circadian transcriptional loop. Does not appear to bind DNA, suggesting indirect transcriptional inhibition.

Drosophila virilis (taxid: 7244)

>sp|O44431|TIM_DROHY Protein timeless (Fragment) OS=Drosophila hydei GN=tim PE=3 SV=1

 Score =  117 bits (293), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 74/109 (67%), Gaps = 14/109 (12%)

Query: 165 VLLRNILHIPEVR-----------GGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKL 213
           +LLRNILHIPE             GG   S  N ILWNLF    DK+L  L++   R  L
Sbjct: 1   MLLRNILHIPETHAHFLMPVLQSSGGHQVSMQNTILWNLFIQSIDKLLLYLMTCPQR-AL 59

Query: 214 WSISVVQLIALMYKDQHVNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
           W +++VQLIA++YKDQHVNTLQKLLNLWFE S SE  SSEDNESNTSPP
Sbjct: 60  WGVTMVQLIAMIYKDQHVNTLQKLLNLWFEASLSE--SSEDNESNTSPP 106

Required for the production of circadian rhythms. The biological cycle depends on the rhythmic formation and nuclear localization of the TIM-PER complex. Light induces the degradation of TIM, which promotes elimination of PER. Nuclear activity of the heterodimer coordinatively regulates PER and TIM transcription through a negative feedback loop. Behaves as a negative element in circadian transcriptional loop. Does not appear to bind DNA, suggesting indirect transcriptional inhibition.

Drosophila hydei (taxid: 7224)

>sp|Q9UNS1|TIM_HUMAN Protein timeless homolog OS=Homo sapiens GN=TIMELESS PE=1 SV=2

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 22/240 (9%)

Query: 6   LNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKD 65
           +N  +L+T  +L   E +T   E D +E ++D+   L  ED T R  R+ +G  Q+++ D
Sbjct: 6   MNCELLATCSALGYLEGDTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQILQSD 64

Query: 66  LLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKE 125
           LLP+L     D   FD  I++++NLT P   LL   +L K    R+   ++   L + KE
Sbjct: 65  LLPILTQHHQDKPLFDAVIRLMVNLTQPA--LLCFGNLPKEPSFRHHFLQVLTYLQAYKE 122

Query: 126 AFLESKITRCIIEHIKKFTD------NESETHVTARICDCINNCLVLLRNILHIP----- 174
           AF   K    + E + +          E +  +  RI       L+L+RNILH+P     
Sbjct: 123 AFASEKAFGVLSETLYELLQLGWEERQEEDNLLIERI-------LLLVRNILHVPADLDQ 175

Query: 175 EVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
           E +     S H+Q+LW +   G D +L  L S     + WS+ V+++++LM++DQ+   L
Sbjct: 176 EKKIDDDASAHDQLLWAIHLSGLDDLLLFLASSSAEEQ-WSLHVLEIVSLMFRDQNPEQL 234

Required for normal progression of S-phase. Involved in the circadian rhythm autoregulatory loop. Negatively regulates CLOCK-NPAS2/BMAL1-induced transactivation of PER1 possibly via translocation of PER1 into the nucleus. Promotes TIPIN nuclear localiZation. Involved in cell survival after DNA damage or replication stress. May be specifically required for the ATR-CHEK1 pathway in the replication checkpoint induced by hydroxyurea or ultraviolet light. May also play an important role in epithelial cell morphogenesis and formation of branching tubules.

Homo sapiens (taxid: 9606)

>sp|Q9Z2Y1|TIM_RAT Protein timeless homolog OS=Rattus norvegicus GN=Timeless PE=1 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 122/239 (51%), Gaps = 20/239 (8%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           M+   +N  +L+T  +L   E  T   E D +E ++D+   L  ED T R  R+ +G  Q
Sbjct: 1   MDLYMMNCELLATCSALGYLEGGTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQ 59

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
           +++ DLLP+L   + D   FD  I++++NLT P   LL   S+ K    R+   ++   L
Sbjct: 60  ILQSDLLPILTQHRQDKPLFDAVIRLMVNLTQPA--LLCFGSVPKDPTVRHHFLQVLTYL 117

Query: 121 TSCKEAFLESKITRCIIEHIKK-----FTDNESETHVTARICDCINNCLVLLRNILHIP- 174
            + KEAF   K    + E + +     + D + E ++       I   L+L+RNILH+P 
Sbjct: 118 QAYKEAFASEKAFGVLSETLYELLQLGWEDRQEEDNLL------IERILLLVRNILHVPA 171

Query: 175 ----EVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229
               E R     S H+++LW +   G D +L  L S     + WS+ V+++I+LM++DQ
Sbjct: 172 NLEQEKRIDDDASIHDRLLWAIHLSGMDDLLLFLSSSSAEQQ-WSLHVLEIISLMFRDQ 229

Required for normal progression of S-phase. Involved in the circadian rhythm autoregulatory loop. Negatively regulates CLOCK-NPAS2/BMAL1-induced transactivation of PER1 possibly via translocation of PER1 into the nucleus. Promotes TIPIN nuclear localiZation. Involved in cell survival after DNA damage or replication stress. May be specifically required for the ATR-CHEK1 pathway in the replication checkpoint induced by hydroxyurea or ultraviolet light. May also play an important role in epithelial cell morphogenesis and formation of branching tubules.

Rattus norvegicus (taxid: 10116)

>sp|Q9R1X4|TIM_MOUSE Protein timeless homolog OS=Mus musculus GN=Timeless PE=1 SV=3

 Score = 90.9 bits (224), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 20/239 (8%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           M+   +N  +L+T  +L   E  T   E D +E ++D+   L  ED T R  R+ +G  Q
Sbjct: 1   MDLYMMNCELLATCSALGYLEGGTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQ 59

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
           +++ DLLP+L   + D   FD  I++++NLT P   LL   S+ K    R+   ++   L
Sbjct: 60  ILQSDLLPILTQHRQDKPLFDAVIRLMVNLTQPA--LLCFGSVPKDSSVRHHFLQVLTYL 117

Query: 121 TSCKEAFLESKITRCIIEHIKK-----FTDNESETHVTARICDCINNCLVLLRNILHIP- 174
            + KEAF   K    + E + +     + D + E ++       I   L+L+RNILH+P 
Sbjct: 118 QAYKEAFASEKAFGVLSETLYELLQLGWEDRQEEDNLL------IERILLLVRNILHVPA 171

Query: 175 ----EVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229
               E       S H+++LW +   G D +L  L S     + WS+ V+++I+LM++DQ
Sbjct: 172 NLEQEKSIDDDASIHDRLLWAIHLSGMDDLLLFLSSSSAEQQ-WSLHVLEIISLMFRDQ 229

Required for normal progression of S-phase. Involved in the circadian rhythm autoregulatory loop. Negatively regulates CLOCK-NPAS2/BMAL1-induced transactivation of PER1 possibly via translocation of PER1 into the nucleus. Promotes TIPIN nuclear localiZation. Involved in cell survival after DNA damage or replication stress. May be specifically required for the ATR-CHEK1 pathway in the replication checkpoint induced by hydroxyurea or ultraviolet light. May also play an important role in epithelial cell morphogenesis and formation of branching tubules.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
312370686	650	hypothetical protein AND_23190 [Anophele	0.951	0.393	0.514	3e-69
158296838	1263	AGAP008288-PA [Anopheles gambiae str. PE	0.951	0.202	0.516	3e-68
170041740	996	timeless protein [Culex quinquefasciatus	0.951	0.257	0.522	5e-68
63365252	1300	TIMELESS [Aedes aegypti]	0.944	0.195	0.516	1e-67
157113339	1300	timeless protein [Aedes aegypti] gi|1088	0.944	0.195	0.516	2e-67
157113337	1291	timeless protein [Aedes aegypti] gi|1088	0.944	0.196	0.516	2e-67
367461163	1251	timeless [Aedes albopictus]	0.944	0.203	0.510	3e-67
305682544	1181	TIMELESS [Gryllus bimaculatus]	0.977	0.222	0.503	8e-67
195434885	1425	GK14675 [Drosophila willistoni] gi|19416	0.951	0.179	0.507	9e-67
194759478	1404	GF14670 [Drosophila ananassae] gi|190615	0.951	0.182	0.505	5e-65

>gi|312370686|gb|EFR19023.1| hypothetical protein AND_23190 [Anopheles darlingi]

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/274 (51%), Positives = 189/274 (68%), Gaps = 18/274 (6%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           MEW+  NP I STFGSL    D+      D ++ L++I  KL  ED T R FRRAIGF Q
Sbjct: 41  MEWLLANPQINSTFGSLGTFVDDAFHVREDCLDTLEEIICKLAVEDATLRTFRRAIGFGQ 100

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
            VK D++PLL++ KD +   D  I++L+NLT+PVECLLP+D + K++ GR+TI+ELN LL
Sbjct: 101 NVKNDIVPLLVNAKD-AKIIDTTIRLLVNLTVPVECLLPVDLVSKSEIGRHTIFELNKLL 159

Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGV 180
            + KEAF+E K T+ +I+H+K   + +S+  ++ + CD +NNCL+LLRNILH+PE+  G 
Sbjct: 160 ITSKEAFVEWKTTKAVIDHMKGILERDSK--LSIQQCDSVNNCLLLLRNILHVPEMGTGA 217

Query: 181 ------------TTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKD 228
                        TS  NQI+WNLFT   DK+L  L+S   R   W +++ QL+ALMYKD
Sbjct: 218 GSHAGSYPTAGHNTSFQNQIIWNLFTQSVDKLLIYLMSCTQR-AYWGVTMAQLVALMYKD 276

Query: 229 QHVNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
           QH++TLQKLLNLWFE++ SE  SSEDNESNTSPP
Sbjct: 277 QHISTLQKLLNLWFESTLSE--SSEDNESNTSPP 308

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296838|ref|XP_001689006.1| AGAP008288-PA [Anopheles gambiae str. PEST] gi|157014904|gb|EDO63569.1| AGAP008288-PA [Anopheles gambiae str. PEST]

 Score =  264 bits (675), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/275 (51%), Positives = 187/275 (68%), Gaps = 19/275 (6%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           MEW+  NP I STFGSL   ED+      D +  L++I  KL  ED T R FRRAIGF Q
Sbjct: 1   MEWLLANPQINSTFGSLGTFEDDAYHLSEDCLVTLEEIICKLAVEDATLRTFRRAIGFGQ 60

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
            VK D++PLL++ KD     D  I++L+NLT+PVECLLP+D + K++ GR+TI+ELN LL
Sbjct: 61  NVKNDIVPLLVNAKD-VKIIDTTIRLLVNLTVPVECLLPVDLVSKSEIGRHTIFELNKLL 119

Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVR--- 177
            + KEAF++ K T+ +I+H+K     E +T ++ + CD +NNCL+LLRNILH+PE+    
Sbjct: 120 ITSKEAFVDWKTTKAVIDHMKGIL--ERDTKLSIQQCDSVNNCLLLLRNILHVPEMGTGA 177

Query: 178 ----------GGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYK 227
                      G  TS  NQI+WNLFT   DK+L  L+S   R   W +++ QL+ALMYK
Sbjct: 178 GGHGGSCYPTAGHNTSFQNQIIWNLFTQSIDKLLIYLMSCPQR-AYWGVTMAQLVALMYK 236

Query: 228 DQHVNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
           DQH++TLQKLLNLWFE++ SE  SSEDNESNTSPP
Sbjct: 237 DQHISTLQKLLNLWFESTLSE--SSEDNESNTSPP 269

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170041740|ref|XP_001848611.1| timeless protein [Culex quinquefasciatus] gi|167865271|gb|EDS28654.1| timeless protein [Culex quinquefasciatus]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/268 (52%), Positives = 188/268 (70%), Gaps = 12/268 (4%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           MEW+  NP I STFGSL    DE  +   D +  L++I  KL  ED T R FRRAIGF Q
Sbjct: 1   MEWLLANPQINSTFGSLGAVVDEVYLVSEDCLVNLEEIIGKLAVEDTTLRTFRRAIGFGQ 60

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
            VK D++PLL+  KD S   D  I++L+NLT+P ECLLP+D + K++ GR+TI+ELN LL
Sbjct: 61  NVKNDIVPLLVHAKD-SKILDPTIRLLVNLTVPAECLLPVDLVSKSEIGRHTIFELNKLL 119

Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEV---- 176
            + KEAF++ K T+ +I+++K   + +S+  ++ + CD INNCL+LLRNILH+PEV    
Sbjct: 120 ITSKEAFVDWKTTKAVIDYMKSILEKDSK--LSIQNCDSINNCLLLLRNILHVPEVNTPG 177

Query: 177 --RGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
             +   +TS  NQILWNLFT   DK+L  L+S   R   W++++ QL+ALMYKDQH++TL
Sbjct: 178 ETKPAHSTSLQNQILWNLFTQSVDKLLIYLMSCPQR-AFWAVTMAQLVALMYKDQHISTL 236

Query: 235 QKLLNLWFETSPSEEDSSEDNESNTSPP 262
           QKLL+ WFE++ SE  SSEDNESNTSPP
Sbjct: 237 QKLLSFWFESTLSE--SSEDNESNTSPP 262

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|63365252|gb|AAY40757.1| TIMELESS [Aedes aegypti]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/275 (51%), Positives = 188/275 (68%), Gaps = 21/275 (7%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           MEW+  NP I STFGSL    D+  +  +D +  L++I  KL  ED + R FRRAIGF Q
Sbjct: 1   MEWLLANPQINSTFGSLGSFVDDIYLVNDDALRTLEEIICKLALEDTSLRTFRRAIGFGQ 60

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
            VK D+LPLL++TK D+   D  I++L+NLT+P+ECLLP++   K++ G +TI+ELN LL
Sbjct: 61  NVKNDILPLLVNTK-DAEIIDTTIRLLVNLTVPIECLLPVELFSKSEIGCHTIFELNKLL 119

Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGV 180
            + KEAF+E K T+ +++H+K   + +S+  +    CD INNCL+LLRNILHIPE  G  
Sbjct: 120 VTSKEAFIEWKTTKAVVDHMKTILEKDSKLSIDN--CDSINNCLLLLRNILHIPE--GNA 175

Query: 181 T-------------TSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYK 227
           T             TS  NQI+WNLFT   DK+L  L+S   R   W++++ QLIALMYK
Sbjct: 176 TSGPGPHHQNSNHNTSFQNQIIWNLFTQSVDKLLIHLMSCPQR-AYWAVTMAQLIALMYK 234

Query: 228 DQHVNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
           DQH++TLQKLLNLWFE++ SE  SSEDNESNTSPP
Sbjct: 235 DQHISTLQKLLNLWFESTLSE--SSEDNESNTSPP 267

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113339|ref|XP_001657784.1| timeless protein [Aedes aegypti] gi|108877774|gb|EAT41999.1| AAEL006411-PB [Aedes aegypti]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/275 (51%), Positives = 188/275 (68%), Gaps = 21/275 (7%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           MEW+  NP I STFGSL    D+  +  +D +  L++I  KL  ED + R FRRAIGF Q
Sbjct: 1   MEWLLANPQINSTFGSLGSFVDDIYLVNDDALRTLEEIICKLALEDTSLRTFRRAIGFGQ 60

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
            VK D+LPLL++TK D+   D  I++L+NLT+P+ECLLP++   K++ G +TI+ELN LL
Sbjct: 61  NVKNDILPLLVNTK-DAEIIDTTIRLLVNLTVPIECLLPVELFSKSEIGCHTIFELNKLL 119

Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGV 180
            + KEAF+E K T+ +++H+K   + +S+  +    CD INNCL+LLRNILHIPE  G  
Sbjct: 120 VTSKEAFIEWKTTKAVVDHMKTILEKDSKLSIDN--CDSINNCLLLLRNILHIPE--GNA 175

Query: 181 T-------------TSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYK 227
           T             TS  NQI+WNLFT   DK+L  L+S   R   W++++ QLIALMYK
Sbjct: 176 TSGPGPHHQNSNHNTSFQNQIIWNLFTQSVDKLLIHLMSCPQR-AYWAVTMAQLIALMYK 234

Query: 228 DQHVNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
           DQH++TLQKLLNLWFE++ SE  SSEDNESNTSPP
Sbjct: 235 DQHMSTLQKLLNLWFESTLSE--SSEDNESNTSPP 267

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113337|ref|XP_001657783.1| timeless protein [Aedes aegypti] gi|108877773|gb|EAT41998.1| AAEL006411-PA [Aedes aegypti]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/275 (51%), Positives = 188/275 (68%), Gaps = 21/275 (7%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           MEW+  NP I STFGSL    D+  +  +D +  L++I  KL  ED + R FRRAIGF Q
Sbjct: 1   MEWLLANPQINSTFGSLGSFVDDIYLVNDDALRTLEEIICKLALEDTSLRTFRRAIGFGQ 60

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
            VK D+LPLL++TK D+   D  I++L+NLT+P+ECLLP++   K++ G +TI+ELN LL
Sbjct: 61  NVKNDILPLLVNTK-DAEIIDTTIRLLVNLTVPIECLLPVELFSKSEIGCHTIFELNKLL 119

Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGV 180
            + KEAF+E K T+ +++H+K   + +S+  +    CD INNCL+LLRNILHIPE  G  
Sbjct: 120 VTSKEAFIEWKTTKAVVDHMKTILEKDSKLSIDN--CDSINNCLLLLRNILHIPE--GNA 175

Query: 181 T-------------TSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYK 227
           T             TS  NQI+WNLFT   DK+L  L+S   R   W++++ QLIALMYK
Sbjct: 176 TSGPGPHHQNSNHNTSFQNQIIWNLFTQSVDKLLIHLMSCPQR-AYWAVTMAQLIALMYK 234

Query: 228 DQHVNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
           DQH++TLQKLLNLWFE++ SE  SSEDNESNTSPP
Sbjct: 235 DQHMSTLQKLLNLWFESTLSE--SSEDNESNTSPP 267

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|367461163|gb|AEX14536.1| timeless [Aedes albopictus]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 22/276 (7%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           MEW+  NP I STFGSL  H D+  +  +D +  L++I  KL  ED + R FRRAIGF Q
Sbjct: 1   MEWLLANPQINSTFGSLGSHVDDVYLVNDDALRTLEEIICKLALEDTSLRTFRRAIGFGQ 60

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
            VK D+LPLL++ K D+   D  I++L+NLT+P+ECLLP++   K++ G +TI+ELN LL
Sbjct: 61  NVKNDILPLLVNAK-DTEIIDTTIRLLVNLTVPIECLLPVELFSKSEIGCHTIFELNKLL 119

Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGV 180
            + KEAF+E K T+ +++++K   + +S+  +    CD INNCL+LLRNILHIPE  G  
Sbjct: 120 ITSKEAFVEWKTTKAVVDYMKTILEKDSKLSIDN--CDSINNCLLLLRNILHIPE--GNS 175

Query: 181 T--------------TSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMY 226
           T              TS  NQI+WNLFT   DK+L  L+S   R   W++++ QLIALMY
Sbjct: 176 TSGPGPHLHHNSNHNTSFQNQIIWNLFTQSIDKLLIHLMSCPQR-AYWAVTMAQLIALMY 234

Query: 227 KDQHVNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
           KDQH++TLQKLLNLWFE++ SE  SSEDNESNTSPP
Sbjct: 235 KDQHISTLQKLLNLWFESTLSE--SSEDNESNTSPP 268

Source: Aedes albopictus

Species: Aedes albopictus

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|305682544|dbj|BAJ16356.1| TIMELESS [Gryllus bimaculatus]

 Score =  259 bits (662), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 136/270 (50%), Positives = 185/270 (68%), Gaps = 7/270 (2%)

Query: 1   MEWVNLNPM-ILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFT 59
           MEW+ +NP+ +  TF S+ V   ++     D + +L ++ +KL  EDR    FRR +GF+
Sbjct: 1   MEWLVVNPLHVHGTFASVGVQVGDSYHVNKDCLSILGEVLDKLRLEDRNLWTFRRTLGFS 60

Query: 60  QVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWL 119
           QV+KKDLLPLLI+ K+D    D  I+IL+NLTIPVECL+P++ +  TD GR+T  ELN L
Sbjct: 61  QVIKKDLLPLLINVKNDFKIIDATIRILVNLTIPVECLVPMEVMLNTDVGRHTTVELNKL 120

Query: 120 LTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGG 179
           L S KEAF++++ TR ++ H+K+    E    ++   C+ INNCL+LLRN+LHIPE +  
Sbjct: 121 LISGKEAFVDARSTRALVNHMKRVL--EKGEKLSEEECESINNCLLLLRNVLHIPETKNN 178

Query: 180 VTT-SHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLL 238
            +T S  NQILWNLF+   DK+L  L++   +   W +++VQLIA+MYKDQHV TLQKLL
Sbjct: 179 QSTCSLQNQILWNLFSQSIDKILIHLMTCAQK-AYWGVTMVQLIAIMYKDQHVGTLQKLL 237

Query: 239 NLWFETSPSEEDSSEDNESNTSPPGPSPTG 268
           N+WFE S SE  SSEDNESNTSPP     G
Sbjct: 238 NVWFEASLSE--SSEDNESNTSPPDQGSGG 265

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195434885|ref|XP_002065432.1| GK14675 [Drosophila willistoni] gi|194161517|gb|EDW76418.1| GK14675 [Drosophila willistoni]

 Score =  259 bits (662), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 138/272 (50%), Positives = 185/272 (68%), Gaps = 16/272 (5%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           M+W+   P + S F SL   E +T +   + + +L++I  KL +ED+T R FRRAIGF Q
Sbjct: 1   MDWLLTTPQLHSAFASLGSLEGDTYVVSPNALAILEEINYKLTYEDQTLRTFRRAIGFGQ 60

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
            V+ DL+PLL + KDD+   +  I+IL+NLT+PVECL  +D + +T+ GR+TI+ELN LL
Sbjct: 61  NVRSDLIPLLENAKDDAV-LESVIRILVNLTVPVECLFSVDVMYRTEVGRHTIFELNKLL 119

Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRG-- 178
            + KEAF + K T+ ++E++K     ESET ++ + CD INNCL+LLRNILHIPE  G  
Sbjct: 120 FTSKEAFTDPKSTKSVVEYMKHIL--ESETKLSPQKCDQINNCLLLLRNILHIPETHGHC 177

Query: 179 --------GVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQH 230
                   G   S  N ILWNLF    DK++  L++   R  +W +++VQLIAL+YKDQH
Sbjct: 178 VMAMMQSSGAQMSMQNTILWNLFIQSIDKLMLYLMTCPQR-AIWGVTMVQLIALIYKDQH 236

Query: 231 VNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
           V+TLQKLLNLWFE S SE  SSEDNESNTSPP
Sbjct: 237 VSTLQKLLNLWFEASLSE--SSEDNESNTSPP 266

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759478|ref|XP_001961974.1| GF14670 [Drosophila ananassae] gi|190615671|gb|EDV31195.1| GF14670 [Drosophila ananassae]

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 138/273 (50%), Positives = 181/273 (66%), Gaps = 17/273 (6%)

Query: 1   MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
           M+W+   P + S F SL   E +T +   + + +L++I  KL +ED+T R FRRAIGF Q
Sbjct: 1   MDWLLATPQLHSAFSSLGYLEGDTYVVNPNALAILEEINYKLTYEDQTLRTFRRAIGFGQ 60

Query: 61  VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
            V+ DL+PLL + KDD+   +  I+IL+NLT+PVECL  +D + +TD GR+TI+ELN LL
Sbjct: 61  NVRSDLIPLLENAKDDAV-LESVIRILVNLTVPVECLFSVDVMYRTDVGRHTIFELNKLL 119

Query: 121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVR--- 177
            + KEAF + K T+ ++E++K     ESE  ++   CD INNCL+LLRNILHIPE     
Sbjct: 120 YTSKEAFTDPKSTKSVVEYMKHIL--ESEPKLSPHKCDQINNCLLLLRNILHIPETHAHC 177

Query: 178 --------GGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229
                   G    S  N ILWNLF    DK+L  L++   R   W +++VQLIAL+YKDQ
Sbjct: 178 VMPMMQSNGPHGISMQNTILWNLFIQSIDKLLLYLMTCPQR-AFWGVTMVQLIALIYKDQ 236

Query: 230 HVNTLQKLLNLWFETSPSEEDSSEDNESNTSPP 262
           HV+TLQKLLNLWFE S SE  SSEDNESNTSPP
Sbjct: 237 HVSTLQKLLNLWFEASLSE--SSEDNESNTSPP 267

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
FB|FBgn0014396	1421	tim "timeless" [Drosophila mel	0.884	0.167	0.472	1.2e-53
UNIPROTKB|Q9UNS1	1208	TIMELESS "Protein timeless hom	0.828	0.184	0.306	6.2e-20
RGD|620939	1205	Timeless "timeless circadian c	0.814	0.181	0.305	7.9e-20
UNIPROTKB|F1SLB6	1208	TIMELESS "Uncharacterized prot	0.828	0.184	0.310	7.9e-20
UNIPROTKB|F1MQI4	1216	TIMELESS "Uncharacterized prot	0.828	0.183	0.306	8e-20
MGI|MGI:1321393	1197	Timeless "timeless circadian c	0.814	0.182	0.301	1e-19
ZFIN|ZDB-GENE-030131-4580	1278	wu:fd23d07 "wu:fd23d07" [Danio	0.851	0.179	0.276	3.4e-18
FB|FBgn0038118	1384	timeout "timeout" [Drosophila	0.814	0.158	0.245	3e-09
WB|WBGene00006571	1353	tim-1 [Caenorhabditis elegans	0.836	0.166	0.238	1.3e-07

FB|FBgn0014396 tim "timeless" [Drosophila melanogaster (taxid:7227)]

 Score = 567 (204.7 bits), Expect = 1.2e-53, P = 1.2e-53
 Identities = 119/252 (47%), Positives = 165/252 (65%)

Query:     1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
             M+W+   P + S F SL   E +T +   + + +L++I  KL +ED+T R FRRAIGF Q
Sbjct:    24 MDWLLATPQLYSAFSSLGCLEGDTYVVNPNALAILEEINYKLTYEDQTLRTFRRAIGFGQ 83

Query:    61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
              V+ DL+PLL + KDD+   +  I+IL+NLT+PVECL  +D + +TD GR+TI+ELN LL
Sbjct:    84 NVRSDLIPLLENAKDDAV-LESVIRILVNLTVPVECLFSVDVMYRTDVGRHTIFELNKLL 142

Query:   121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGV 180
              + KEAF E++ T+ ++E++K     ES+  ++   CD INNCL+LLRNILHIPE     
Sbjct:   143 YTSKEAFTEARSTKSVVEYMKHIL--ESDPKLSPHKCDQINNCLLLLRNILHIPETHAHC 200

Query:   181 TT----------SHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQH 230
                         S  N ILWNLF    DK+L  L++   R   W +++VQLIAL+YKDQH
Sbjct:   201 VMPMMQSMPHGISMQNTILWNLFIQSIDKLLLYLMTCPQR-AFWGVTMVQLIALIYKDQH 259

Query:   231 VNTLQKLLNLWF 242
             V+TLQKLL+LWF
Sbjct:   260 VSTLQKLLSLWF 271

GO:0071482 "cellular response to light stimulus" evidence=IMP

GO:0007623 "circadian rhythm" evidence=NAS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0005737 "cytoplasm" evidence=NAS;IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS;IDA;TAS

GO:0046982 "protein heterodimerization activity" evidence=NAS;TAS;IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:2000678 "negative regulation of transcription regulatory region DNA binding" evidence=IDA

GO:0048512 "circadian behavior" evidence=IMP

GO:0007617 "mating behavior" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;NAS;TAS

GO:0045475 "locomotor rhythm" evidence=IGI;NAS

GO:0008062 "eclosion rhythm" evidence=NAS;TAS

GO:0030431 "sleep" evidence=NAS

GO:0045187 "regulation of circadian sleep/wake cycle, sleep" evidence=IMP;TAS

GO:0006606 "protein import into nucleus" evidence=NAS

GO:0007622 "rhythmic behavior" evidence=TAS

GO:0007620 "copulation" evidence=IMP

GO:0009649 "entrainment of circadian clock" evidence=TAS

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

GO:0042749 "regulation of circadian sleep/wake cycle" evidence=IMP

GO:0009648 "photoperiodism" evidence=IMP

GO:0046957 "negative phototaxis" evidence=IMP

GO:0060086 "circadian temperature homeostasis" evidence=IMP

UNIPROTKB|Q9UNS1 TIMELESS "Protein timeless homolog" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 6.2e-20, P = 6.2e-20
 Identities = 72/235 (30%), Positives = 118/235 (50%)

Query:     6 LNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKD 65
             +N  +L+T  +L   E +T   E D +E ++D+   L  ED T R  R+ +G  Q+++ D
Sbjct:     6 MNCELLATCSALGYLEGDTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQILQSD 64

Query:    66 LLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKE 125
             LLP+L     D   FD  I++++NLT P   LL   +L K    R+   ++   L + KE
Sbjct:    65 LLPILTQHHQDKPLFDAVIRLMVNLTQPA--LLCFGNLPKEPSFRHHFLQVLTYLQAYKE 122

Query:   126 AFLESKITRCIIEHIKKFTD-NESETHVTARICDCINNCLVLLRNILHIP-----EVRGG 179
             AF   K    + E + +       E      +   I   L+L+RNILH+P     E +  
Sbjct:   123 AFASEKAFGVLSETLYELLQLGWEERQEEDNLL--IERILLLVRNILHVPADLDQEKKID 180

Query:   180 VTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
                S H+Q+LW +   G D +L  L S     + WS+ V+++++LM++DQ+   L
Sbjct:   181 DDASAHDQLLWAIHLSGLDDLLLFLASSSAEEQ-WSLHVLEIVSLMFRDQNPEQL 234

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA

GO:0002009 "morphogenesis of an epithelium" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=IC;IDA

GO:0007623 "circadian rhythm" evidence=ISS

GO:0009582 "detection of abiotic stimulus" evidence=TAS

GO:0009628 "response to abiotic stimulus" evidence=TAS

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0033261 "regulation of S phase" evidence=IMP

RGD|620939 Timeless "timeless circadian clock" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 7.9e-20, P = 7.9e-20
 Identities = 73/239 (30%), Positives = 124/239 (51%)

Query:     1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
             M+   +N  +L+T  +L   E  T   E D +E ++D+   L  ED T R  R+ +G  Q
Sbjct:     1 MDLYMMNCELLATCSALGYLEGGTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQ 59

Query:    61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
             +++ DLLP+L   + D   FD  I++++NLT P   LL   S+ K    R+   ++   L
Sbjct:    60 ILQSDLLPILTQHRQDKPLFDAVIRLMVNLTQPA--LLCFGSVPKDPTVRHHFLQVLTYL 117

Query:   121 TSCKEAFLESK----ITRCIIEHIKK-FTDNESETHVTARICDCINNCLVLLRNILHIP- 174
              + KEAF   K    ++  + E ++  + D + E ++       I   L+L+RNILH+P 
Sbjct:   118 QAYKEAFASEKAFGVLSETLYELLQLGWEDRQEEDNLL------IERILLLVRNILHVPA 171

Query:   175 ----EVRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229
                 E R     S H+++LW +   G D +L   +S     + WS+ V+++I+LM++DQ
Sbjct:   172 NLEQEKRIDDDASIHDRLLWAIHLSGMDDLLL-FLSSSSAEQQWSLHVLEIISLMFRDQ 229

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IMP

GO:0001822 "kidney development" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007623 "circadian rhythm" evidence=ISS

GO:0009790 "embryo development" evidence=ISO

GO:0030324 "lung development" evidence=ISO

GO:0033261 "regulation of S phase" evidence=ISO

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=ISO

UNIPROTKB|F1SLB6 TIMELESS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 249 (92.7 bits), Expect = 7.9e-20, P = 7.9e-20
 Identities = 73/235 (31%), Positives = 119/235 (50%)

Query:     6 LNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKD 65
             +N  +L+T  +L   E +T   E D +E ++D+   L  ED T R  R+ +G  Q+++ D
Sbjct:     4 MNCELLATCSALGYLEGDTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQILQSD 62

Query:    66 LLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKE 125
             LLP+LI  + D   FD  I++++NLT P   LL    + K    R+   ++   L + KE
Sbjct:    63 LLPILIQHRRDKPLFDAVIRLMVNLTQPA--LLCFGGVPKEPNFRHHFLQVLVYLQAYKE 120

Query:   126 AFLESKITRCIIEHIKKFTD-NESETHVTARICDCINNCLVLLRNILHIP-----EVRGG 179
             AF   K    + E + +       E      +   I   L+L+RNILH+P     E R  
Sbjct:   121 AFASEKAFGVLSETLYELLQLGWEERQEEDNLL--IERILLLVRNILHVPADLDQEKRID 178

Query:   180 VTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
                S H+++LW +   G D +L  L S     + WS+ V+++I+LM++DQ+   L
Sbjct:   179 DDASVHDRLLWAIHLSGLDDLLLFLASSPAEQQ-WSLHVLEIISLMFRDQNPEQL 232

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033261 "regulation of S phase" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1MQI4 TIMELESS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 8.0e-20, P = 8.0e-20
 Identities = 72/235 (30%), Positives = 119/235 (50%)

Query:     6 LNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKD 65
             +N  +L+T  +L   E +T   E D +E ++D+   L  ED T R  R+ +G  Q+++ D
Sbjct:     6 MNCELLATCSALGYLEGDTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGSAQILQSD 64

Query:    66 LLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKE 125
             LLP+L   + D   FD  I++++NLT P   LL   S+ K    R+   ++   L + KE
Sbjct:    65 LLPILTQHRQDKPLFDAVIRLMVNLTQPA--LLCFGSVPKEPSFRHHFLQVLAYLQAYKE 122

Query:   126 AFLESKITRCIIEHIKKFTD-NESETHVTARICDCINNCLVLLRNILHIP-----EVRGG 179
             AF   K    + E + +       E      +   I   L+L+RN+LH+P     E R  
Sbjct:   123 AFASEKAFGVLSETLYELLQLGWEERQEEDNLL--IERILLLVRNVLHVPADLEQEKRID 180

Query:   180 VTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
                S H+++LW +   G D +L  L S     + WS+ V+++I+LM++DQ+   L
Sbjct:   181 DDASVHDRLLWAIHLSGLDDLLLFLASSPAEQQ-WSLHVLEIISLMFRDQNPEQL 234

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033261 "regulation of S phase" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:1321393 Timeless "timeless circadian clock 1" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 72/239 (30%), Positives = 124/239 (51%)

Query:     1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
             M+   +N  +L+T  +L   E  T   E D +E ++D+   L  ED T R  R+ +G  Q
Sbjct:     1 MDLYMMNCELLATCSALGYLEGGTYHKEPDCLESVKDLIRYLRHEDET-RDVRQQLGAAQ 59

Query:    61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
             +++ DLLP+L   + D   FD  I++++NLT P   LL   S+ K    R+   ++   L
Sbjct:    60 ILQSDLLPILTQHRQDKPLFDAVIRLMVNLTQPA--LLCFGSVPKDSSVRHHFLQVLTYL 117

Query:   121 TSCKEAFLESK----ITRCIIEHIKK-FTDNESETHVTARICDCINNCLVLLRNILHIP- 174
              + KEAF   K    ++  + E ++  + D + E ++       I   L+L+RNILH+P 
Sbjct:   118 QAYKEAFASEKAFGVLSETLYELLQLGWEDRQEEDNLL------IERILLLVRNILHVPA 171

Query:   175 --EVRGGVT--TSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQ 229
               E    +    S H+++LW +   G D +L   +S     + WS+ V+++I+LM++DQ
Sbjct:   172 NLEQEKSIDDDASIHDRLLWAIHLSGMDDLLL-FLSSSSAEQQWSLHVLEIISLMFRDQ 229

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=ISO

GO:0001822 "kidney development" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

GO:0030324 "lung development" evidence=IMP

GO:0033261 "regulation of S phase" evidence=ISO

GO:0042753 "positive regulation of circadian rhythm" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0048511 "rhythmic process" evidence=IEA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IMP

GO:0051301 "cell division" evidence=IEA

ZFIN|ZDB-GENE-030131-4580 wu:fd23d07 "wu:fd23d07" [Danio rerio (taxid:7955)]

 Score = 234 (87.4 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 66/239 (27%), Positives = 114/239 (47%)

Query:     1 MEWVNLNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQ 60
             M+   +N  +L+T  +L   E +    E D +E ++D+   L  ED   R  R+ +G  Q
Sbjct:     1 MDLYMMNCELLATCSALGYLEGDVYHKEPDCLESVKDLIRYLRHED-DARDIRQQLGAGQ 59

Query:    61 VVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLL 120
             +++ DLLP++     D   FD CI++++NLT P   LL    +      R+   ++   L
Sbjct:    60 ILQNDLLPIITQHTQDKPLFDACIRLMVNLTQPA--LLCFGKIPDDPAFRHHFLQVTSYL 117

Query:   121 TSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIP-----E 175
              + KEAF + K+   + E +      + E          I   L+L+RN+LH+P     E
Sbjct:   118 QAYKEAFADEKVFTVLSETLYNLLQLDWEQRDEEDNL-LIERILLLVRNVLHVPADPYEE 176

Query:   176 VRGGVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
                    S H+++LW +   G D +L  L       + WS  ++++I+LM++DQ    L
Sbjct:   177 KNVDDDASVHDKLLWAIHISGLDDLLKFLACAQSEQQ-WSFHILEIISLMFRDQTAELL 234

GO:0003682 "chromatin binding" evidence=IEA

FB|FBgn0038118 timeout "timeout" [Drosophila melanogaster (taxid:7227)]

 Score = 163 (62.4 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 56/228 (24%), Positives = 105/228 (46%)

Query:    12 STFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLI 71
             +T  +L   + +    E D  E L+ +   +   D     +RR +G ++V++ DL+ +L 
Sbjct:    10 ATCAALGYSDGQKYQAEPDAAEGLKHLI-WILRRDLDNHEYRRHLGRSKVLQTDLVYMLP 68

Query:    72 STKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESK 131
                      DL I++L+ LT P   LL  +   K + GR    EL  +L   K AF + K
Sbjct:    69 DYVHHEELSDLLIRLLVILTNPT-LLLYREGAPKDNHGRKVFMELIDILQGYKAAFAKDK 127

Query:   132 ITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIP-----EVRGGVTTSHHN 186
             +   + E +K+  +         +    I   LVL+RN+L +P     E R     S H+
Sbjct:   128 VWSALFEKLKQALEIAFAIRSEEQNL-LIERILVLVRNVLQVPANPEAECRADNDASLHD 186

Query:   187 QILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
             Q++W L   G   ++  +IS     + + +  ++++ L++++Q   +L
Sbjct:   187 QVIWALHQTGMLDLVLFVISSPDEEQ-FHLHGLEIVCLLFREQSAESL 233

GO:0000077 "DNA damage checkpoint" evidence=IMP

GO:0009649 "entrainment of circadian clock" evidence=IMP

WB|WBGene00006571 tim-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 150 (57.9 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 56/235 (23%), Positives = 104/235 (44%)

Query:     6 LNPMILSTFGSLRVHEDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKD 65
             +N ++     +L  +ED     E D  E ++D+   L  ED      R   G   +V++D
Sbjct:     1 MNVLVQGAVHALGYYEDGKYSREPDCYESIRDLIRYLR-EDGDDHTARIECGRHNLVEQD 59

Query:    66 LLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKE 125
             L+P++         FD+ I++++NL  P    +        D+ +   +EL   L   K 
Sbjct:    60 LVPMVKCEDLTDDEFDIAIRLMVNLCQPAISTMRGKPPADRDQWK-MYWELEENLRRAKT 118

Query:   126 AFLESKITRCIIEHIKK-FTDNESETHVTARICDCINNCLVLLRNILHI-PEVRGGVTT- 182
             AF ++     I + I   F D E E     R+   +   ++L++ +  I P+   G  T 
Sbjct:   119 AFSDAHFFTAIKKRIDNYFIDTEYEDR-DERLRLVVERIVLLIKYVFSINPDTSEGRRTR 177

Query:   183 ---SHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTL 234
                S H++++      G DK L  + +Q  R K + ++++ + AL+ K+Q    L
Sbjct:   178 IEDSSHDRVIIAFLESGIDKTLMHIANQP-REKEFHVTILDIFALILKEQTAEDL 231


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      269       243   0.00097  113 3  11 22  0.37    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  217 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.18u 0.09s 21.27t   Elapsed:  00:00:03
  Total cpu time:  21.18u 0.09s 21.27t   Elapsed:  00:00:04
  Start:  Thu Aug 15 15:38:57 2013   End:  Thu Aug 15 15:39:01 2013

GO:0007063 "regulation of sister chromatid cohesion" evidence=IGI;IMP

GO:0007064 "mitotic sister chromatid cohesion" evidence=IGI;IMP

GO:0051177 "meiotic sister chromatid cohesion" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0030892 "mitotic cohesin complex" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	269
pfam04821	266	pfam04821, TIMELESS, Timeless protein	2e-64

>gnl|CDD|191103 pfam04821, TIMELESS, Timeless protein

 Score =  202 bits (515), Expect = 2e-64
 Identities = 82/247 (33%), Positives = 119/247 (48%), Gaps = 14/247 (5%)

Query: 21  EDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTF 80
           + +  +   D +E L+D+   L F+D      RR +G  Q+V+ DL+P+L     D    
Sbjct: 1   DGDKYVLGPDALECLKDLIRWLRFDDEKLNDVRRCLGEAQLVQGDLIPILSCWPQDDRIA 60

Query: 81  DLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHI 140
           D CI++L+NLT PVE L+      KT  GR  I EL   L   KEAFL++K+ + ++  +
Sbjct: 61  DACIRLLVNLTWPVELLV--GKEPKTVNGRRHIPELQEALQGYKEAFLDAKVLKALVRIL 118

Query: 141 KKFTDNESETHVTARICDCINNCLVLLRNILHIP-----EVRGGVTTSHHNQILWNLFTH 195
                       + R    I   L+LLRNILHIP     E RG    S H+  +W     
Sbjct: 119 LPSLA-VPWEDRSERDNLIIELILLLLRNILHIPPNPEAEKRGDEDASSHDATIWAFHQQ 177

Query: 196 GFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFETSPSEEDSSEDN 255
           G D +L  L S       + + ++++I L+YK Q     +KL N   + S SE   SED 
Sbjct: 178 GIDDLLLTLASSPDEED-FGVHILEIIFLLYKGQ---DPEKLFNDSEQRSLSE--KSEDE 231

Query: 256 ESNTSPP 262
           E  TS  
Sbjct: 232 EELTSLR 238

The timeless gene in Drosophila melanogaster and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control. This family includes a related proteins from a number of fungal species. Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
PF04821	266	TIMELESS: Timeless protein; InterPro: IPR006906 Th	100.0
KOG1974|consensus	1229		100.0

>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []

Probab=100.00  E-value=7.9e-68  Score=483.00  Aligned_cols=221  Identities=33%  Similarity=0.504  Sum_probs=209.3

Q ss_pred             cCCcccCCchHHHHHHHHHHHHhhcCCCChHHHHHhhhhcccccCchhhhccccCChhHHHHHHHHHHhccccccccCCC
Q psy5527          21 EDETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTTFDLCIKILMNLTIPVECLLPI  100 (269)
Q Consensus        21 e~~~Y~~g~dcl~~LkDL~R~Lr~dd~~~r~vrr~lg~~~iv~~DLiPIL~~~~~d~~l~~~~lrLLV~LT~P~~~~~~~  100 (269)
                      |+++|++||||++|||||+||||+||++.|+|||+||+||||++||||||++|.+++++|++|+||||+||||++++  .
T Consensus         1 e~~~Y~~g~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~--~   78 (266)
T PF04821_consen    1 EDGVYVKGDDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELL--V   78 (266)
T ss_pred             CCCceecCHhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHh--c
Confidence            68899999999999999999999999998899999999999999999999999999999999999999999999997  3


Q ss_pred             CCccccccchhhHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCccccCCChhhhhHHHHHHHHHHHhccccCCCC--
Q psy5527         101 DSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRG--  178 (269)
Q Consensus       101 ~~~~~~~~~r~~~~el~~~l~~yK~afl~~~~~~~l~~~l~~~L~~~~~~~Rt~~d~~iI~liL~LiRNiL~Ip~~~~--  178 (269)
                      +..|++.+++++|.++.++|+.||+||+++++|+++++++.++|++++ .+||++|+.+|++||+|||||||||+++.  
T Consensus        79 ~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~-~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~  157 (266)
T PF04821_consen   79 ESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDW-EDRTERDNLIIELVLTLIRNLLAIPDPPSAS  157 (266)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhccc-ccCCHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence            777788899999999999999999999999999999999999999999 79999999999999999999999998864  


Q ss_pred             ---CCCcchHHHHHHHHHhcChHHHHHHHHhccccccchhhhHHHHHHHHHcCCChHHHHHHhhhhccCCCCc
Q psy5527         179 ---GVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFETSPSE  248 (269)
Q Consensus       179 ---~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e~~~~~~~ilEIi~ll~k~~~~~~L~~~~~~~~~~s~se  248 (269)
                         +.++++||++||+|+++||+++|++|++++++ ++|+++++||||+|||||+|++|++   ++.+++++|
T Consensus       158 ~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~-~~f~~~lLEIi~ll~k~~~p~~L~~---~~~~~~~~e  226 (266)
T PF04821_consen  158 KRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQE-SDFNLLLLEIIYLLFKGQDPESLAS---AQPQRSTSE  226 (266)
T ss_pred             cccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccc-cchhhHHHHHHHHHHcCCCHHHHhh---ccccccccc
Confidence               46788999999999999999999999999998 8999999999999999999999998   555666666

This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.

>KOG1974|consensus

Probab=100.00  E-value=1.9e-54  Score=444.62  Aligned_cols=234  Identities=34%  Similarity=0.491  Sum_probs=224.0

Q ss_pred             CcccccchhhHhHhhccCcccCCcccCCch-HHHHHHHHHHHHhhcCCCChHHHHHhhhhcccccCchhhhccccCChhH
Q psy5527           1 MEWVNLNPMILSTFGSLRVHEDETNITEND-RVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDSTT   79 (269)
Q Consensus         1 m~~~~l~~~i~~~~saLG~~e~~~Y~~g~d-cl~~LkDL~R~Lr~dd~~~r~vrr~lg~~~iv~~DLiPIL~~~~~d~~l   79 (269)
                      |+|..|+++|.++|+||||+|+++|+..|| ||+|||||+||||.||++.|+||+++|.|+||++||||||++|.+|..+
T Consensus         1 m~l~~~~~~l~~a~saLGy~E~d~y~~~pdycLa~LKDL~RyLr~~Dd~~r~vr~~vg~~qiVt~DLiPIL~~~~~d~~l   80 (1229)
T KOG1974|consen    1 MDLLLMNPGLYSACSALGYPEGDTYVVEPDYCLACLKDLKRYLRYVDDTLRTVRRAVGAGQIVTSDLIPILIDWDKDDAL   80 (1229)
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCCeeecCchHHHHHHHHHHHHHHhcCchHHHHHHHHhhHhhhhhhhhhhhhhhccccHH
Confidence            899999999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccccccCCCCCccccccchhhHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCccccCCChhhhhH
Q psy5527          80 FDLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCIIEHIKKFTDNESETHVTARICDC  159 (269)
Q Consensus        80 ~~~~lrLLV~LT~P~~~~~~~~~~~~~~~~r~~~~el~~~l~~yK~afl~~~~~~~l~~~l~~~L~~~~~~~Rt~~d~~i  159 (269)
                      |++++|+|||||+|+++++..+.++.+..++++|++|.++|++||.||+..+.++++...+..+|..-+ +.|+++|+.+
T Consensus        81 ~~~~ir~lvnlt~pv~~t~~~k~~~~~~~~v~~~~~L~~~l~~~K~Ait~~~~~~vi~~~l~~~l~~~~-e~r~erd~~~  159 (1229)
T KOG1974|consen   81 FDNVIRLLVNLTQPVELTFSDKVMPRTRVGVHMIWELLEYLQTSKNAITSAKSFKVIVEYLKHLLESLD-EKRSERDCLL  159 (1229)
T ss_pred             HHHHHHHhcccccccccccCCcccccchhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc-cccCHHHHHH
Confidence            999999999999999999986668888899999999999999999999999999999999999887546 7999999999


Q ss_pred             HHHHHHHHHHhccccCCCC--------CCCcchHHHHHHHHHhcChHHHHHHHHhccccccchhhhHHHHHHHHHcCCCh
Q psy5527         160 INNCLVLLRNILHIPEVRG--------GVTTSHHNQILWNLFTHGFDKVLTQLISQHHRHKLWSISVVQLIALMYKDQHV  231 (269)
Q Consensus       160 I~liL~LiRNiL~Ip~~~~--------~~~~s~~~~ii~~l~~~~i~~lLl~l~s~~~e~~~~~~~ilEIi~ll~k~~~~  231 (269)
                      |++||+|||||||||+...        +..+|+|+++||+++.+|++++|++|++++.+ .+|+++++|||++|+|||+|
T Consensus       160 I~~vlLLirnil~Ip~d~~~~k~~~~~~~~~s~~d~il~~~~~s~idk~ll~I~t~p~~-~~~~v~lleIiali~k~q~~  238 (1229)
T KOG1974|consen  160 IELVLLLIRNILHIPEDHAHCKMPQSTPHGASMHDQILINLKISGIDKILLYIATLPEE-EHDDVTLLEIIALILKGQHP  238 (1229)
T ss_pred             HHHHHHHHHHHHhCCCcchhhhcccccccccccchHHHHHHHHhhhHhHhhhhccCChh-hhcceeHHHHHHHHHccCCH
Confidence            9999999999999999843        56789999999999999999999999999998 99999999999999999999


Q ss_pred             HHHHH
Q psy5527         232 NTLQK  236 (269)
Q Consensus       232 ~~L~~  236 (269)
                      +.++.
T Consensus       239 e~la~  243 (1229)
T KOG1974|consen  239 ELLAG  243 (1229)
T ss_pred             HHhcC
Confidence            98886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 76/269 (28%)

Query: 20  HED-ETNITENDRVEVLQDIYNKLCFEDRTTRPFRRAIGFTQVVKKDLLPLLISTKDDST 78
           H D ET   +    ++L        FED     F        V  +D+   ++S ++   
Sbjct: 6   HMDFETGEHQYQYKDILSV------FED----AFVDNFDCKDV--QDMPKSILSKEE--- 50

Query: 79  TFDLCIKILMNLTIPVE-CLLPIDSLCKTDEGRNTIYEL---------NWLLTSCKEAFL 128
                I  ++     V   L    +L    +    + +           +L++  K    
Sbjct: 51  -----IDHIIMSKDAVSGTLRLFWTLL--SKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 129 E-SKITRCIIEHIKK-FTDNE--SETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSH 184
           + S +TR  IE   + + DN+  ++ +V+ R+          LR  L   E+R       
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RL-QPYLK----LRQALL--ELR------- 148

Query: 185 HNQILWNLFTHG---FDK-VLTQLISQHHRHKL-------WSISVVQLIALMYKDQHVNT 233
             +   N+   G     K  +   +   ++ +        W       + L   +     
Sbjct: 149 PAK---NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNLKNCNSPETV 198

Query: 234 LQKLLNLWFETSP---SEEDSSEDNESNT 259
           L+ L  L ++  P   S  D S + +   
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 60/177 (33%)

Query: 81  DLCIKILMNLTIPVECLLPIDSLCKTDEGRNTIYELNWLLTSCKEAFLESKITRCII--- 137
           +  +++L  L   ++     +   ++D   N    ++ +    +          C++   
Sbjct: 196 ETVLEMLQKLLYQIDP----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 138 -----EHIKKFTDNESETHVTARICDCINNCLVLLRNILHIPEVRGGVTTSHHNQILWNL 192
                +    F                  +C +L             +TT          
Sbjct: 252 NVQNAKAWNAFN----------------LSCKIL-------------LTTR--------- 273

Query: 193 FTHGFDK-VLTQLISQHHRHKLWSISVVQLIALMYKDQHVNTLQKLLNLWFETSPSE 248
                 K V   L +    H    IS+      +  D+  + L K L+   +  P E
Sbjct: 274 -----FKQVTDFLSAATTTH----ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00