Psyllid ID: psy5647

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-----
RRSLAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHSTKAEKSKVVTEEEEKEEEE
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccEEEEEccccccccccHHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHcccccccEEEEEHHHHHHcHHccccccEEEEEEcccccccccccHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHcccccccccHHHcccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccccEEEEEcccccccccccccccEEEEEcccccccHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHcHHHHHcccHHHHccccHHHHHHHHcccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHccccEEEEEEccHHHHccccHHHHHHHHHcc
cccccccHcccccccccccccccccccccccccHcccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHccccccccccEEEcHHHHHHccHHHHHHHHEEEHHHcccccccccccEEEcccccHHHHHHHHHHHHHHHccccccccEcEEEEEccHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHcccccccEEEEEEHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHcccccEEEEcccHcHccHHHHHHHHHHHcccccccHHHHHHHHccccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHcccHHcccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHcccccccEEEEEEcccccccEEEccccEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHcccHHEEcccccccccccHHHHHHHHcccccccccccccccccccccccEEcccccccHcccccHcccccccccccccHHHHHHHcccEEEEEEEcccHHcccccccccccccccc
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
rrslapsqlskrspedspgiktfpppvkkekrsctsrkplgsvdnedepnsklpMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKAlhdptapnalvlYTPPQLSAHDLLKIDKDKIQVHVVVDPVlsnilrphqregVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSallskylpvktEQVVCIKMTDLQKELYtnliksdavrrtmkggentKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLferlsklrgykyvrldgsmtikkrAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTIsdthdkikcsrcVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHStkaekskvvteeeekeeee
RRSLAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHStkaekskvvteeeekeeee
*****************************************************************LIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILR****************RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTM*****TKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIE**********KALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQH********************
**********************************************************************************************************************************DKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID*************FMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAV*************MTALSSITSLKKLCNHPDLVMDKIQTG************TGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALS******************LRSLFQLEENTISDTHDKI***************************HHVTEKRWLVDPILKHCWGAGVSFVFY**********************
******************GIKTFPP**************LGSVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKM************CVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHSTK*****************
************************************************PNSKLPMTKEEMSEHENLIRQILAKPFKVPILNY*******************ALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQT**DGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHST******************
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RRSLAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHSTKAEKSKVVTEEEEKEEEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query755 2.2.26 [Sep-21-2011]
P70270747 DNA repair and recombinat yes N/A 0.956 0.966 0.615 0.0
Q92698747 DNA repair and recombinat yes N/A 0.956 0.966 0.612 0.0
O12944733 DNA repair and recombinat yes N/A 0.912 0.939 0.652 0.0
B4KHL5783 DNA repair and recombinat N/A N/A 0.988 0.952 0.568 0.0
B4M9A8786 DNA repair and recombinat N/A N/A 0.988 0.949 0.562 0.0
B4JCS7786 DNA repair and recombinat N/A N/A 0.985 0.946 0.567 0.0
B4MX21784 DNA repair and recombinat N/A N/A 0.980 0.943 0.569 0.0
O76460784 DNA repair and recombinat yes N/A 0.986 0.950 0.561 0.0
B4NXB8784 DNA repair and recombinat N/A N/A 0.986 0.950 0.557 0.0
B3NAN8784 DNA repair and recombinat N/A N/A 0.986 0.950 0.558 0.0
>sp|P70270|RAD54_MOUSE DNA repair and recombination protein RAD54-like OS=Mus musculus GN=Rad54l PE=1 SV=2 Back     alignment and function desciption
 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/762 (61%), Positives = 566/762 (74%), Gaps = 40/762 (5%)

Query: 1   RRSLAPSQLSKRSPED--------SPGIKTFPPPVKKEKRSCTS---------RKPLGSV 43
           RRSLAPSQL++R PED         PG  T   P K++  S T          RKPL  +
Sbjct: 2   RRSLAPSQLARRKPEDRSSDDEDWQPGTVT---PKKRKSSSETQVQECFLSPFRKPLTQL 58

Query: 44  DNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKAL 103
            N      + P    + S+HE  IR IL+KPFKVPI NY G    ++ALG++R G R+AL
Sbjct: 59  LN------RPPCL--DSSQHEAFIRSILSKPFKVPIPNYQGP-LGSRALGLKRAGVRRAL 109

Query: 104 HDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVT 163
           HDP    ALVLY PP LSAHD LK+DK+K+ VHVVVDP+LS +LRPHQREGVKF++ECVT
Sbjct: 110 HDPLEEGALVLYEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVT 169

Query: 164 GVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223
             RI  ++GCIMADEMGLGKTLQCITLMWTLLRQ P  KP I+KA++V+PSSLVKNW NE
Sbjct: 170 SRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEIEKAVVVSPSSLVKNWYNE 229

Query: 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNE 283
           + KWLGGR+  L IDGGSK EID KL  FM   G R  +PIL+ISYETFR H  VL K  
Sbjct: 230 VEKWLGGRIQPLAIDGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGN 289

Query: 284 VGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGT 343
           VGLV+CDEGHRLKN E+QTYQAL  L   RRVL+SGTPIQNDLLEYFSLVHFVN GILGT
Sbjct: 290 VGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGT 349

Query: 344 AQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
           A EF+K +E PIL+ +D+ AS+A+R +  ERL +LIGIVNRCLIRRTS +LSKYLPVK E
Sbjct: 350 AHEFKKHFELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIE 409

Query: 404 QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK 463
           QVVC ++T LQ ELY   ++       ++ G   K+ +++LSSITSLKKLCNHP L+ DK
Sbjct: 410 QVVCCRLTPLQTELYKRFLRQAKPEEELREG---KMSVSSLSSITSLKKLCNHPALIYDK 466

Query: 464 IQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNY 523
                DGFE  + I P G    Y S  +  +LS K++VLD +LAV +  + DK+VLVSNY
Sbjct: 467 CVAEEDGFEGTLGIFPPG----YNSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNY 522

Query: 524 TQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNL 582
           TQTLDLFE+L ++R Y YVRLDG+M+IKKRAKVVE FN  S+ +F+FMLSSKAGGCGLNL
Sbjct: 523 TQTLDLFEKLCRVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNL 582

Query: 583 IGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALS 642
           IGANRLVMFDPDWNPAND+QAMARVWRDGQKK C++YR LS G+IEEK+ QRQ+HKKALS
Sbjct: 583 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALS 642

Query: 643 SCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDD 702
           SCVVD E+DV RHFS+ EL+ LF L+E ++SDTHD++ C RCVN  QV PPP  SDCT D
Sbjct: 643 SCVVDEEQDVERHFSLGELKELFTLDEASLSDTHDRLHCRRCVNNRQVWPPPDGSDCTSD 702

Query: 703 LSCWHHVTEKRWLVDPILKHCWGA---GVSFVFYQHSTKAEK 741
           L+ W+H T+KR L D +L+  W A    ++FVF+Q S + ++
Sbjct: 703 LAQWNHSTDKRGLQDEVLQAAWDASSTAITFVFHQRSHEEQR 744
Involved in DNA repair and mitotic recombination. Functions in the recombinational DNA repair (RAD52) pathway. Dissociates RAD51 from nucleoprotein filaments formed on dsDNA. Could be involved in the turnover of RAD51 protein-dsDNA filaments (By similarity). Deficient mice also show significantly shorter telomeres than wild-type controls, indicating that the protein activity plays an essential role in telomere length maintenance in mammals. Deficiency also resulted in an increased frequency of end-to-end chromosome fusions involving telomeres compared to the controls, suggesting a putative role in telomere capping. Non-homologous end joining (NHEJ) and homologous recombination (HR) represent the two major pathways of DNA double-strand break (DSB) repair in eukaryotic cells. LIG4 and RAD54L cooperate to support cellular proliferation, repair spontaneous DSBs, and prevent chromosome and single chromatid aberrations.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|Q92698|RAD54_HUMAN DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2 Back     alignment and function description
>sp|O12944|RAD54_CHICK DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1 Back     alignment and function description
>sp|B4KHL5|RAD54_DROMO DNA repair and recombination protein RAD54-like OS=Drosophila mojavensis GN=okr PE=3 SV=1 Back     alignment and function description
>sp|B4M9A8|RAD54_DROVI DNA repair and recombination protein RAD54-like OS=Drosophila virilis GN=okr PE=3 SV=1 Back     alignment and function description
>sp|B4JCS7|RAD54_DROGR DNA repair and recombination protein RAD54-like OS=Drosophila grimshawi GN=okr PE=3 SV=1 Back     alignment and function description
>sp|B4MX21|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila willistoni GN=okr PE=3 SV=1 Back     alignment and function description
>sp|O76460|RAD54_DROME DNA repair and recombination protein RAD54-like OS=Drosophila melanogaster GN=okr PE=1 SV=1 Back     alignment and function description
>sp|B4NXB8|RAD54_DROYA DNA repair and recombination protein RAD54-like OS=Drosophila yakuba GN=okr PE=3 SV=2 Back     alignment and function description
>sp|B3NAN8|RAD54_DROER DNA repair and recombination protein RAD54-like OS=Drosophila erecta GN=okr PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query755
328705070751 PREDICTED: DNA repair and recombination 0.980 0.985 0.711 0.0
242021397745 conserved hypothetical protein [Pediculu 0.968 0.981 0.687 0.0
238814383749 RAD54-like [Nasonia vitripennis] 0.972 0.979 0.661 0.0
307174075682 DNA repair and recombination protein RAD 0.887 0.982 0.711 0.0
332024911681 DNA repair and recombination protein RAD 0.886 0.982 0.710 0.0
340726376746 PREDICTED: DNA repair and recombination 0.957 0.969 0.667 0.0
350424065748 PREDICTED: DNA repair and recombination 0.957 0.966 0.664 0.0
307203835679 DNA repair and recombination protein RAD 0.887 0.986 0.702 0.0
383848072760 PREDICTED: DNA repair and recombination 0.947 0.940 0.664 0.0
328779113741 PREDICTED: Rad54 protein isoform 1 [Apis 0.952 0.970 0.668 0.0
>gi|328705070|ref|XP_001948023.2| PREDICTED: DNA repair and recombination protein RAD54-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score = 1124 bits (2906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/760 (71%), Positives = 632/760 (83%), Gaps = 20/760 (2%)

Query: 1   RRSLAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEM 60
           RRSLAPSQ++KR   DS           + KR+C           + E NSKL      +
Sbjct: 2   RRSLAPSQVNKRPLSDS----------NQSKRACVKYNDQA---QKTEQNSKLDDKSITL 48

Query: 61  SEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQL 120
           S +E  IR IL+KPFKVPI N++G  +S +ALGVRR+G R+ LHDPTAP+AL+LY PPQ+
Sbjct: 49  SLYEQNIRNILSKPFKVPIANWSGSSFS-RALGVRRDGIRRPLHDPTAPDALILYIPPQI 107

Query: 121 SAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMG 180
           SAHD+LK+DKDKI V+VVVDP LS ILRPHQREGVKFMYECVTGVRIE AYGCIMADEMG
Sbjct: 108 SAHDILKMDKDKILVNVVVDPALSKILRPHQREGVKFMYECVTGVRIEGAYGCIMADEMG 167

Query: 181 LGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGG 240
           LGKTLQCITLMWTLL+QGP A P I KAIIV PSSLVKNWCNEI KWLGGR+ ALP+DGG
Sbjct: 168 LGKTLQCITLMWTLLKQGPDASPTIHKAIIVTPSSLVKNWCNEIKKWLGGRIGALPVDGG 227

Query: 241 SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNE-VGLVLCDEGHRLKNCE 299
            K ++D  +  F+Q  GRR V+PILVISYETFRSHAS+L   E +GLVLCDEGHRLKNCE
Sbjct: 228 GKEQVDKVITGFVQARGRRTVDPILVISYETFRSHASLLQNAEDIGLVLCDEGHRLKNCE 287

Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
           +QTY++LM LKAKRRVLLSGTPIQNDLLEYFSLVHFVN+GILGTAQEFR+QYETPI+RGQ
Sbjct: 288 NQTYRSLMALKAKRRVLLSGTPIQNDLLEYFSLVHFVNEGILGTAQEFRRQYETPIVRGQ 347

Query: 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419
           DSCA+D+ER KA ERLEQLI +VNRCLIRRTSALLSKYLPVKTE VVCIK+T LQ +LY 
Sbjct: 348 DSCATDSERKKAAERLEQLISLVNRCLIRRTSALLSKYLPVKTEHVVCIKLTPLQTDLYL 407

Query: 420 NLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILP 479
           +L+KSD V +++KG +  K+   AL++IT LKKLC HPDL++DKI  G+DGFEN+ ++LP
Sbjct: 408 HLLKSDMVTKSIKGNDG-KVTSNALAAITLLKKLCAHPDLIIDKIMNGSDGFENSKHLLP 466

Query: 480 TGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGY 539
             Y A++   KL+IELS+KLMVLDTMLAVIK TT D++VL+SNYTQTL+LFERL+KLR Y
Sbjct: 467 PTYIAAHSKKKLMIELSSKLMVLDTMLAVIKTTTTDRVVLISNYTQTLELFERLAKLRNY 526

Query: 540 KYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA 598
            +VRLDGSMT KKRAK V+  N  TS  F+FMLSSKAGGCGLNLIGANRLVMFDPDWNPA
Sbjct: 527 TFVRLDGSMTAKKRAKAVDDINSPTSGVFLFMLSSKAGGCGLNLIGANRLVMFDPDWNPA 586

Query: 599 NDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSM 658
           NDDQAMARVWRDGQKKPCFVYRFL+TGSIEEKMMQRQAHKKALSS VVDCEEDVARHF++
Sbjct: 587 NDDQAMARVWRDGQKKPCFVYRFLATGSIEEKMMQRQAHKKALSSSVVDCEEDVARHFTV 646

Query: 659 SELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDP 718
           SELR+LF L ++TISDTH+KIKC+RC+N IQ K PP++SDCT+DLSCWHH  +KRWLVDP
Sbjct: 647 SELRTLFNLRQDTISDTHEKIKCTRCINNIQTKLPPVDSDCTNDLSCWHHCADKRWLVDP 706

Query: 719 ILKHCWGAGVSFVFYQHSTKAEKSKVVTEEE---EKEEEE 755
           +LK CW AG+S VFYQ+ST  ++  ++ E+    +K+EEE
Sbjct: 707 VLKQCWHAGISMVFYQNSTIHKEKPIIEEDNDNIDKKEEE 746

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242021397|ref|XP_002431131.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516380|gb|EEB18393.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|238814383|ref|NP_001154953.1| RAD54-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307174075|gb|EFN64762.1| DNA repair and recombination protein RAD54-like [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332024911|gb|EGI65099.1| DNA repair and recombination protein RAD54-like protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340726376|ref|XP_003401535.1| PREDICTED: DNA repair and recombination protein RAD54-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350424065|ref|XP_003493677.1| PREDICTED: DNA repair and recombination protein RAD54-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307203835|gb|EFN82771.1| DNA repair and recombination protein RAD54-like [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383848072|ref|XP_003699676.1| PREDICTED: DNA repair and recombination protein RAD54 [Megachile rotundata] Back     alignment and taxonomy information
>gi|328779113|ref|XP_392959.4| PREDICTED: Rad54 protein isoform 1 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query755
ZFIN|ZDB-GENE-040426-968738 rad54l "RAD54-like (S. cerevis 0.961 0.983 0.641 6.2e-252
UNIPROTKB|F1NX31742 RAD54L "DNA repair and recombi 0.957 0.974 0.644 7.3e-249
UNIPROTKB|F1NBD4733 RAD54L "DNA repair and recombi 0.947 0.975 0.640 7.8e-245
UNIPROTKB|O12944733 RAD54L "DNA repair and recombi 0.947 0.975 0.639 5.5e-244
UNIPROTKB|A1L4Z4749 RAD54L "Uncharacterized protei 0.964 0.971 0.622 8.9e-244
MGI|MGI:894697747 Rad54l "RAD54 like (S. cerevis 0.964 0.974 0.621 1.8e-243
UNIPROTKB|F1PJC9747 RAD54L "Uncharacterized protei 0.962 0.973 0.618 1.2e-241
UNIPROTKB|Q92698747 RAD54L "DNA repair and recombi 0.964 0.974 0.620 1.5e-241
UNIPROTKB|F1S3V8747 RAD54L "Uncharacterized protei 0.964 0.974 0.613 4e-241
UNIPROTKB|B4MX21784 okr "DNA repair and recombinat 0.962 0.927 0.576 9.2e-226
ZFIN|ZDB-GENE-040426-968 rad54l "RAD54-like (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 2426 (859.1 bits), Expect = 6.2e-252, P = 6.2e-252
 Identities = 474/739 (64%), Positives = 579/739 (78%)

Query:     1 RRSLAPSQLSKRSP-EDSPGIKTFPPPVKKE-KRSCTSRKPLGSVDNEDEPNSKLPMTKE 58
             RRSLAPSQ++KR    DS   + + P ++ + KR C   K +        P +  P+  +
Sbjct:     2 RRSLAPSQVAKRKQGPDSDDEEDWEPDMEPQSKRDCRE-KYISPYRKPLTPLTNRPVCAD 60

Query:    59 EMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPP 118
               +EHE  IR+IL+KPFK+PI NYTG     +ALG+RR G RKALHDP    ALVLY PP
Sbjct:    61 G-NEHEAFIRKILSKPFKIPIPNYTGV-LGLRALGLRRAGVRKALHDPFEDGALVLYEPP 118

Query:   119 QLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADE 178
              +SAHDL+K DK+K+ VHVVVDPVLS +LRPHQREGVKF+++CVTG RIE++YGCIMADE
Sbjct:   119 AISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADE 178

Query:   179 MGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID 238
             MGLGKTLQCITL+WTLL+Q P  KP IDK I+V+PSSLV+NW NE+ KWLGGRV  + ID
Sbjct:   179 MGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAID 238

Query:   239 GGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNC 298
             GGSK EID+KL +F+   G R   PIL+ISYETFR HA VLHK +VGLV+CDEGHRLKN 
Sbjct:   239 GGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNS 298

Query:   299 ESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRG 358
             ++QTY AL  + A+RRVL+SGTPIQNDLLEYFSLVHFVN GILGTAQEF+K++E PIL+G
Sbjct:   299 DNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKG 358

Query:   359 QDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
             +D+ ASD +R    ++L++LI IVNRCLIRRTS +LSKYLPVK EQVVC  +T LQKELY
Sbjct:   359 RDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELY 418

Query:   419 TNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNIL 478
                +K      +++ G   K+ +++LSSITSLKKLCNHP L+ +K  TG +GF+ A+++ 
Sbjct:   419 KLFLKQAKPVESLQTG---KISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLF 475

Query:   479 PTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRG 538
             P  Y  S K+ +   +LS K++VLD +LA+ + TT DK+VLVSNYTQTLDLFE+L + R 
Sbjct:   476 PQNY--STKAVEP--QLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 531

Query:   539 YKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597
             Y YVRLDG+M+IKKRAK+VE FN  S+ EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP
Sbjct:   532 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP 591

Query:   598 ANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFS 657
             AND+QAMARVWRDGQKK C++YR LSTG+IEEK++QRQAHKKALSSCVVD E+DV RHFS
Sbjct:   592 ANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFS 651

Query:   658 MSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVD 717
             + ELR LF L E T+SDTHD+ +C RCVNG QV+PPP +SDCT DLS WHH  +KR L D
Sbjct:   652 LGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHHCADKRGLRD 711

Query:   718 PILKHCWGAGVSFVFYQHS 736
             P+L+  W A VSFVF+Q S
Sbjct:   712 PVLQASWDAAVSFVFHQRS 730
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0008094 "DNA-dependent ATPase activity" evidence=IDA
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|F1NX31 RAD54L "DNA repair and recombination protein RAD54-like" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBD4 RAD54L "DNA repair and recombination protein RAD54-like" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O12944 RAD54L "DNA repair and recombination protein RAD54-like" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A1L4Z4 RAD54L "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:894697 Rad54l "RAD54 like (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJC9 RAD54L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q92698 RAD54L "DNA repair and recombination protein RAD54-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S3V8 RAD54L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B4MX21 okr "DNA repair and recombination protein RAD54-like" [Drosophila willistoni (taxid:7260)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B4MX21RAD54_DROWI3, ., 6, ., 4, ., -0.56910.98010.9438N/AN/A
O12944RAD54_CHICK3, ., 6, ., 4, ., -0.65290.91250.9399yesN/A
B3MMA5RAD54_DROAN3, ., 6, ., 4, ., -0.55210.96680.9228N/AN/A
B4JCS7RAD54_DROGR3, ., 6, ., 4, ., -0.56780.98540.9465N/AN/A
B4KHL5RAD54_DROMO3, ., 6, ., 4, ., -0.56820.98800.9527N/AN/A
Q29KH2RAD54_DROPS3, ., 6, ., 4, ., -0.54650.98540.9514yesN/A
O76460RAD54_DROME3, ., 6, ., 4, ., -0.56110.98670.9502yesN/A
B4M9A8RAD54_DROVI3, ., 6, ., 4, ., -0.56220.98800.9491N/AN/A
P70270RAD54_MOUSE3, ., 6, ., 4, ., -0.61540.95620.9665yesN/A
P41410RAD54_SCHPO3, ., 6, ., 4, ., -0.53310.76820.6807yesN/A
A4PBL4RAD54_ORYSJ3, ., 6, ., 4, ., -0.42600.86490.6663yesN/A
B4NXB8RAD54_DROYA3, ., 6, ., 4, ., -0.55720.98670.9502N/AN/A
P32863RAD54_YEAST3, ., 6, ., 4, ., -0.50240.74830.6291yesN/A
Q92698RAD54_HUMAN3, ., 6, ., 4, ., -0.61280.95620.9665yesN/A
B4GS98RAD54_DROPE3, ., 6, ., 4, ., -0.54650.98540.9514N/AN/A
B3NAN8RAD54_DROER3, ., 6, ., 4, ., -0.55850.98670.9502N/AN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.12LOW CONFIDENCE prediction!
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query755
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 1e-106
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 1e-90
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 1e-66
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 3e-24
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 3e-24
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 4e-21
smart0049082 smart00490, HELICc, helicase superfamily c-termina 2e-19
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 1e-16
pfam11496279 pfam11496, HDA2-3, Class II histone deacetylase co 2e-09
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 1e-05
pfam08658191 pfam08658, Rad54_N, Rad54 N terminal 2e-05
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  345 bits (885), Expect = e-106
 Identities = 200/644 (31%), Positives = 311/644 (48%), Gaps = 56/644 (8%)

Query: 47  DEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDP 106
           D     L  T E++ E +   R  L  P ++  L+     +  + L +     +  L + 
Sbjct: 257 DLKVLLLSATPEQLKEEDLFARLRLLDPLRLADLSQILEKFVRETLKLSARDLKDELKEL 316

Query: 107 TAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVR 166
            A   L           DL                     LRP+Q EGV ++ E    + 
Sbjct: 317 LAELRLSEDLLNAPEPVDLSAE------------------LRPYQLEGVNWLSE----LL 354

Query: 167 IEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITK 226
             +  G I+AD+MGLGKT+Q I L+ +LL    +       A+IV P+SL+ NW  E  K
Sbjct: 355 RSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLG---PALIVVPASLLSNWKREFEK 411

Query: 227 WLGGRVAALPIDGGSKAEIDNKLNSFMQ--TYGRRPVNPILVISYETFRSHA---SVLHK 281
           +       L   G  K+E+D K  +           +  +++ +YE  R        L K
Sbjct: 412 FAPDLRLVLVYHG-EKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKK 470

Query: 282 NEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLV-HFVNQGI 340
            E   V+ DE HR+KN +S   +AL  LKA  R+ L+GTP++N L E +SL+  F+N G+
Sbjct: 471 IEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGL 530

Query: 341 LGTA-QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSA--LLSKY 397
           LGT+   F + +E PI   +D    +A        +E L  +++  ++RRT     + K 
Sbjct: 531 LGTSFAIFTRLFEKPIQAEEDIGPLEAR----ELGIELLRKLLSPFILRRTKEDVEVLKE 586

Query: 398 LPVKTEQVVCIKMTDLQKELYTNLIKS-----DAVRRTMKGGENTK----LGMTALSSIT 448
           LP K E+V+  ++++ Q+ELY  L++        +    K   +        +  L+ +T
Sbjct: 587 LPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLT 646

Query: 449 SLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELS-AKLMVLDTML- 506
            L+++CNHP LV + ++   D     +              K LI+LS  KL  LD +L 
Sbjct: 647 RLRQICNHPALVDEGLEATFDRIVLLLRED----KDFDYLKKPLIQLSKGKLQALDELLL 702

Query: 507 AVIKMT-TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSN 565
             +       K+++ S +T  LDL E   K  G KYVRLDGS   K+R ++++ FN    
Sbjct: 703 DKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEE 762

Query: 566 EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTG 625
           E +F+LS KAGG GLNL GA+ +++FDP WNPA + QA+ R  R GQK+P  VYR ++ G
Sbjct: 763 EKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822

Query: 626 SIEEKMMQRQAHKKALSSCVVD-CEEDVARHFSMSELRSLFQLE 668
           +IEEK+++ Q  K+ L   ++D   E      S+ +L  LF L 
Sbjct: 823 TIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFSLG 866

Length = 866
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 755
KOG0390|consensus776 100.0
KOG0387|consensus 923 100.0
KOG0385|consensus 971 100.0
KOG0384|consensus 1373 100.0
KOG1015|consensus 1567 100.0
KOG0392|consensus1549 100.0
KOG0389|consensus941 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0391|consensus 1958 100.0
KOG0388|consensus1185 100.0
KOG0386|consensus 1157 100.0
KOG1016|consensus 1387 100.0
KOG1002|consensus791 100.0
KOG4439|consensus901 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1000|consensus689 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
KOG1001|consensus674 100.0
KOG0383|consensus696 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PRK13766 773 Hef nuclease; Provisional 100.0
KOG0298|consensus 1394 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.98
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.97
PHA02558501 uvsW UvsW helicase; Provisional 99.96
KOG0354|consensus746 99.94
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.93
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.93
PTZ00110545 helicase; Provisional 99.93
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.93
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.93
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.93
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.93
KOG1123|consensus776 99.93
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.93
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.92
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 99.92
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.92
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.92
PTZ00424401 helicase 45; Provisional 99.91
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 99.9
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.9
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.9
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.89
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.89
KOG0331|consensus519 99.88
PRK106891147 transcription-repair coupling factor; Provisional 99.88
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.87
KOG0330|consensus476 99.87
PRK13767 876 ATP-dependent helicase; Provisional 99.86
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.84
PRK02362 737 ski2-like helicase; Provisional 99.84
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.83
COG4096 875 HsdR Type I site-specific restriction-modification 99.83
PRK01172674 ski2-like helicase; Provisional 99.81
PRK00254 720 ski2-like helicase; Provisional 99.81
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.8
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.79
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 99.78
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.77
KOG0350|consensus620 99.75
KOG0345|consensus567 99.75
COG4889 1518 Predicted helicase [General function prediction on 99.75
KOG0333|consensus673 99.74
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.74
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.74
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.73
KOG0328|consensus400 99.72
KOG0348|consensus708 99.72
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.72
KOG0342|consensus543 99.71
PRK09200 790 preprotein translocase subunit SecA; Reviewed 99.7
KOG0340|consensus442 99.7
PHA02653675 RNA helicase NPH-II; Provisional 99.69
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.69
KOG0335|consensus482 99.68
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.68
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.68
PRK09401 1176 reverse gyrase; Reviewed 99.68
KOG0343|consensus 758 99.67
COG1204 766 Superfamily II helicase [General function predicti 99.67
COG1205 851 Distinct helicase family with a unique C-terminal 99.67
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.66
PRK05580679 primosome assembly protein PriA; Validated 99.65
COG1202 830 Superfamily II helicase, archaea-specific [General 99.64
KOG0339|consensus731 99.63
KOG0338|consensus691 99.62
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.6
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.6
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.59
smart00487201 DEXDc DEAD-like helicases superfamily. 99.59
PRK14701 1638 reverse gyrase; Provisional 99.58
PRK09694878 helicase Cas3; Provisional 99.56
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.56
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.55
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.55
KOG4284|consensus 980 99.54
KOG0326|consensus459 99.54
KOG0336|consensus629 99.53
KOG0341|consensus610 99.53
KOG0347|consensus731 99.53
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.53
KOG0332|consensus477 99.52
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.52
KOG0351|consensus 941 99.48
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 99.47
KOG0344|consensus593 99.45
KOG0334|consensus 997 99.44
smart0049082 HELICc helicase superfamily c-terminal domain. 99.43
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.42
PRK12904 830 preprotein translocase subunit SecA; Reviewed 99.41
KOG0346|consensus569 99.41
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.41
PRK13107 908 preprotein translocase subunit SecA; Reviewed 99.41
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.38
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.38
KOG0952|consensus 1230 99.37
KOG0352|consensus 641 99.36
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.34
PRK05298652 excinuclease ABC subunit B; Provisional 99.31
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.31
KOG0951|consensus 1674 99.26
PF11496297 HDA2-3: Class II histone deacetylase complex subun 99.25
KOG0327|consensus397 99.24
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 99.23
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.23
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 99.23
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.21
KOG0353|consensus695 99.16
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.12
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.12
KOG0337|consensus529 99.09
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.04
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 98.96
COG0610 962 Type I site-specific restriction-modification syst 98.92
KOG0947|consensus 1248 98.92
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.81
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 98.81
PRK15483 986 type III restriction-modification system StyLTI en 98.76
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 98.73
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.71
KOG1513|consensus 1300 98.71
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.68
KOG0948|consensus 1041 98.68
KOG0949|consensus 1330 98.61
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.61
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.61
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.59
CHL00122 870 secA preprotein translocase subunit SecA; Validate 98.5
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.47
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 98.46
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 98.42
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 98.4
KOG0950|consensus 1008 98.38
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 98.37
KOG0922|consensus 674 98.35
KOG0329|consensus387 98.34
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 98.34
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 98.28
PF13871278 Helicase_C_4: Helicase_C-like 98.27
KOG0349|consensus725 98.22
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 98.19
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 98.09
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.07
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.07
PF08658196 Rad54_N: Rad54 N terminal; InterPro: IPR013967 Thi 97.94
KOG0953|consensus700 97.89
KOG0920|consensus 924 97.8
KOG0924|consensus 1042 97.78
COG3587 985 Restriction endonuclease [Defense mechanisms] 97.75
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.74
PRK10536262 hypothetical protein; Provisional 97.52
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 97.48
KOG0926|consensus 1172 97.48
COG0653 822 SecA Preprotein translocase subunit SecA (ATPase, 97.44
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.4
KOG0923|consensus 902 97.36
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 97.22
KOG1803|consensus649 97.18
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 97.14
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.12
PRK14873665 primosome assembly protein PriA; Provisional 96.89
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 96.86
TIGR00376637 DNA helicase, putative. The gene product may repre 96.83
KOG0925|consensus 699 96.71
KOG1131|consensus 755 96.71
PRK04296190 thymidine kinase; Provisional 96.6
KOG1802|consensus935 96.49
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.39
COG0553 866 HepA Superfamily II DNA/RNA helicases, SNF2 family 96.35
KOG1805|consensus1100 96.0
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 95.92
KOG4150|consensus 1034 95.82
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 95.7
PRK10875615 recD exonuclease V subunit alpha; Provisional 95.54
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 95.5
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 95.3
smart00382148 AAA ATPases associated with a variety of cellular 95.13
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 94.7
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 94.68
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 94.59
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 94.25
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 94.21
PRK06526254 transposase; Provisional 94.1
PRK07952244 DNA replication protein DnaC; Validated 94.03
PTZ001121164 origin recognition complex 1 protein; Provisional 94.02
KOG0951|consensus1674 93.93
PLN03025319 replication factor C subunit; Provisional 93.9
PRK08084235 DNA replication initiation factor; Provisional 93.88
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 93.66
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 93.52
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 93.43
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 93.41
PRK08116268 hypothetical protein; Validated 93.38
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 93.32
TIGR02928365 orc1/cdc6 family replication initiation protein. M 93.12
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 93.01
PRK14974336 cell division protein FtsY; Provisional 92.97
COG1484254 DnaC DNA replication protein [DNA replication, rec 92.91
PRK08727233 hypothetical protein; Validated 92.78
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 92.75
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 92.69
COG3421 812 Uncharacterized protein conserved in bacteria [Fun 92.67
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 92.67
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 92.63
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 92.43
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 92.33
KOG1132|consensus 945 92.32
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 92.3
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 92.15
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 91.86
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 91.7
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 91.7
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 91.67
CHL00181287 cbbX CbbX; Provisional 91.65
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 91.48
PF1324576 AAA_19: Part of AAA domain 91.41
smart00491142 HELICc2 helicase superfamily c-terminal domain. 91.39
PRK06835329 DNA replication protein DnaC; Validated 91.33
PRK12377248 putative replication protein; Provisional 91.21
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 91.2
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 91.09
PRK09112351 DNA polymerase III subunit delta'; Validated 91.08
PRK14087450 dnaA chromosomal replication initiation protein; P 91.07
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 90.75
PHA02533534 17 large terminase protein; Provisional 90.69
PRK06871325 DNA polymerase III subunit delta'; Validated 90.63
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 90.47
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 90.46
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 90.32
PRK05642234 DNA replication initiation factor; Validated 90.25
PRK00149450 dnaA chromosomal replication initiation protein; R 90.24
PRK12402337 replication factor C small subunit 2; Reviewed 90.19
PRK07471365 DNA polymerase III subunit delta'; Validated 90.11
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 90.02
PRK00411394 cdc6 cell division control protein 6; Reviewed 89.98
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 89.87
PRK05707328 DNA polymerase III subunit delta'; Validated 89.84
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 89.79
KOG0989|consensus346 89.75
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 89.63
TIGR00362405 DnaA chromosomal replication initiator protein Dna 89.49
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 89.49
COG0552340 FtsY Signal recognition particle GTPase [Intracell 89.42
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 89.34
PRK06921266 hypothetical protein; Provisional 89.22
PRK13889988 conjugal transfer relaxase TraA; Provisional 89.14
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 89.03
PRK06893229 DNA replication initiation factor; Validated 88.96
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 88.9
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 88.8
PRK12422445 chromosomal replication initiation protein; Provis 88.66
PRK08769319 DNA polymerase III subunit delta'; Validated 88.52
PRK07993334 DNA polymerase III subunit delta'; Validated 88.48
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 88.27
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 88.26
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 88.21
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 88.19
PRK13826 1102 Dtr system oriT relaxase; Provisional 88.05
PTZ00293211 thymidine kinase; Provisional 88.0
PRK08903227 DnaA regulatory inactivator Hda; Validated 87.99
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 87.98
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 87.71
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 87.24
PHA02544316 44 clamp loader, small subunit; Provisional 87.23
KOG0740|consensus428 86.94
PRK14088440 dnaA chromosomal replication initiation protein; P 86.87
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 86.76
CHL00095821 clpC Clp protease ATP binding subunit 86.68
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 86.66
PHA03372668 DNA packaging terminase subunit 1; Provisional 86.64
COG0470325 HolB ATPase involved in DNA replication [DNA repli 86.64
PRK09183259 transposase/IS protein; Provisional 86.59
PRK00440319 rfc replication factor C small subunit; Reviewed 86.35
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 86.29
PRK00771437 signal recognition particle protein Srp54; Provisi 86.03
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 86.0
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 85.92
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 85.9
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 85.83
PF00265176 TK: Thymidine kinase; InterPro: IPR001267 Thymidin 85.78
PRK11823446 DNA repair protein RadA; Provisional 85.78
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 85.69
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 85.58
KOG0738|consensus491 85.2
PRK07940394 DNA polymerase III subunit delta'; Validated 85.13
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 85.1
cd03115173 SRP The signal recognition particle (SRP) mediates 84.6
KOG0952|consensus1230 84.52
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 84.44
PHA03368738 DNA packaging terminase subunit 1; Provisional 84.26
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 84.24
PRK10865857 protein disaggregation chaperone; Provisional 84.2
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 83.99
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 83.99
PRK14086617 dnaA chromosomal replication initiation protein; P 83.92
KOG0442|consensus 892 83.81
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 83.27
PF13173128 AAA_14: AAA domain 83.17
PRK08181269 transposase; Validated 82.75
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 82.1
KOG0780|consensus483 81.59
PRK06067234 flagellar accessory protein FlaH; Validated 81.58
COG2256436 MGS1 ATPase related to the helicase subunit of the 81.53
PRK06090319 DNA polymerase III subunit delta'; Validated 81.39
PRK13342413 recombination factor protein RarA; Reviewed 81.32
PRK08533230 flagellar accessory protein FlaH; Reviewed 81.0
KOG0991|consensus333 80.97
PRK06964342 DNA polymerase III subunit delta'; Validated 80.68
PRK11054684 helD DNA helicase IV; Provisional 80.54
PF07015231 VirC1: VirC1 protein; InterPro: IPR009744 This fam 80.5
PRK10416318 signal recognition particle-docking protein FtsY; 80.15
COG1702348 PhoH Phosphate starvation-inducible protein PhoH, 80.1
>KOG0390|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.2e-111  Score=946.59  Aligned_cols=611  Identities=50%  Similarity=0.776  Sum_probs=534.5

Q ss_pred             hhHHHHHHHHhcCCCCCCcCCCCCCCCCccccccccccc--cccCCCCCCCCcccccCCCC-------------------
Q psy5647          61 SEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGA--RKALHDPTAPNALVLYTPPQ-------------------  119 (755)
Q Consensus        61 ~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~dp~~~~~lv~~~p~~-------------------  119 (755)
                      ..+...+....++.|.+|...|....+....+|++....  .++++||.+..+.+.+.|-.                   
T Consensus        94 ~~~~~~~~~~~s~~~~~~~~~~~~~~~n~~~lg~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~h~~~~  173 (776)
T KOG0390|consen   94 HVIIGGISGGLSSGKGIPEDLYVDTEGNLVELGVREDDEILGRALFDPLESIAIVDYEPVSNTFEKVHKTKEDCEHSFIW  173 (776)
T ss_pred             hhhhcccccccccccccCccccccccccceecccccccchhhhhhhcchhhcccccCCcccchhhcccchhcccchhhhh
Confidence            566778888999999999998766332234566665543  68899999988888877611                   


Q ss_pred             -------------------------------------CChhhhhcccccccc-eeeeeCchhhcCCcHHHHHHHHHHHHH
Q psy5647         120 -------------------------------------LSAHDLLKIDKDKIQ-VHVVVDPVLSNILRPHQREGVKFMYEC  161 (755)
Q Consensus       120 -------------------------------------~~~~~~~~~~~~~~~-~~v~v~p~l~~~LrphQ~egv~~l~~~  161 (755)
                                                           ...+..+..+.+... ++++++|.+...|||||+||++|||+|
T Consensus       174 ~~~ig~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~v~v~~dP~l~~~LrPHQ~EG~~FL~kn  253 (776)
T KOG0390|consen  174 KQDIGLVCRVCGCVLKEITKSSSDDSTYPLPPGFRSNLCDDSPMVASKDKFSGVHVVIDPLLKKILRPHQREGFEFLYKN  253 (776)
T ss_pred             hhcccceeeeecccccccccccccccCCCCCCcccccccccccccCCCCcCccceEEecccHhhhcCchHHHHHHHHHhh
Confidence                                                 111223333444443 889999999999999999999999999


Q ss_pred             hhccccc-CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCC-CceEEEecC
Q psy5647         162 VTGVRIE-DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDG  239 (755)
Q Consensus       162 ~~g~~~~-~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~-~~~~~~~~~  239 (755)
                      ++|.... +.+|||+||+||+|||+|+|+++|+++++.|.++|++++.|||||++|+.||++||.||.+. ++..+.+++
T Consensus       254 l~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~  333 (776)
T KOG0390|consen  254 LAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYS  333 (776)
T ss_pred             hhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHHHHHhccccccceeeeec
Confidence            9997654 88999999999999999999999999999999999999999999999999999999999995 888888888


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeec
Q psy5647         240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSG  319 (755)
Q Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTG  319 (755)
                      ..+. ...+...+.......-...|+|+||++++.+...+....++++||||||++||.+|.++++|.++++++||+|||
T Consensus       334 ~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSG  412 (776)
T KOG0390|consen  334 TKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTG  412 (776)
T ss_pred             ccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeC
Confidence            7665 445556666555556667899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCC
Q psy5647         320 TPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLP  399 (755)
Q Consensus       320 TPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP  399 (755)
                      ||+||++.|||++++|++|++||+...|++.|+.|+.++++.+++..+... .+++++|..++++|++||+.+++.++||
T Consensus       413 Tp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~-~~rl~eL~~~t~~fi~rrt~~il~k~LP  491 (776)
T KOG0390|consen  413 TPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER-EERLQELRELTNKFILRRTGDILLKYLP  491 (776)
T ss_pred             CcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh-HHHHHHHHHHHHhheeecccchhhhhCC
Confidence            999999999999999999999999999999999999999999999998888 7779999999999999999999999999


Q ss_pred             CceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhh-hhhhcCccchhhh-hhh
Q psy5647         400 VKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVM-DKIQTGADGFENA-MNI  477 (755)
Q Consensus       400 ~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~-~~~~~~~~~~~~~-~~~  477 (755)
                      ++.+++|+|.+|+.|..+|..+++.. ....+.+        ..|..++.|+++||||.|+. .........+... ...
T Consensus       492 ~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~--------~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~  562 (776)
T KOG0390|consen  492 GKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKG--------YALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLL  562 (776)
T ss_pred             CceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhc--------chhhHHHHHHHHhcCHHhhcccccccccccccChHhhh
Confidence            99999999999999999999998875 4333332        27889999999999999994 3333332223221 111


Q ss_pred             CCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHH
Q psy5647         478 LPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVV  557 (755)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v  557 (755)
                      .+..+    .........|+|+.+|..++..+++....+++++++|++++|+++.+|+-+|+.++++||+|+.++|+++|
T Consensus       563 ~~~~~----~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~v  638 (776)
T KOG0390|consen  563 DPGKL----KLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLV  638 (776)
T ss_pred             ccccc----ccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHH
Confidence            11111    22233445799999999999999888889999999999999999999999999999999999999999999


Q ss_pred             HHHcc-CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q psy5647         558 ETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQA  636 (755)
Q Consensus       558 ~~Fn~-~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~  636 (755)
                      +.||+ .+..+|||+|++|||+||||+||+|||+||++|||+++.|||+||||+||+|+|+||||+++||+||+||+||.
T Consensus       639 d~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~  718 (776)
T KOG0390|consen  639 DTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQT  718 (776)
T ss_pred             HhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHH
Confidence            99999 44459999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHhhhhCCchhhhccCCHHHHHhccccCCCCccccccccccccccC
Q psy5647         637 HKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVN  686 (755)
Q Consensus       637 ~K~~l~~~vv~~~~~~~~~~s~~el~~Lf~~~~~~~~~t~d~~~~~~~~~  686 (755)
                      +|+.|++.|++..+...++|+.++++.+|.+..+++++||+...|.+|..
T Consensus       719 ~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~~~~~~~~e~~~~~~~~~~~~  768 (776)
T KOG0390|consen  719 HKEGLSSMVFDEEEDVEKHFFTEDLKTLFDLELDTIVETHKLKKSKDCLL  768 (776)
T ss_pred             HhhhhhheEEecccccccccchHHHHHHHhhhccccccchhhhhhHHHhh
Confidence            99999999999999999999999999999999999999999999999976

>KOG0387|consensus Back     alignment and domain information
>KOG0385|consensus Back     alignment and domain information
>KOG0384|consensus Back     alignment and domain information
>KOG1015|consensus Back     alignment and domain information
>KOG0392|consensus Back     alignment and domain information
>KOG0389|consensus Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0391|consensus Back     alignment and domain information
>KOG0388|consensus Back     alignment and domain information
>KOG0386|consensus Back     alignment and domain information
>KOG1016|consensus Back     alignment and domain information
>KOG1002|consensus Back     alignment and domain information
>KOG4439|consensus Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1000|consensus Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG1001|consensus Back     alignment and domain information
>KOG0383|consensus Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0298|consensus Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG0354|consensus Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>KOG1123|consensus Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG0331|consensus Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0330|consensus Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0350|consensus Back     alignment and domain information
>KOG0345|consensus Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0333|consensus Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG0328|consensus Back     alignment and domain information
>KOG0348|consensus Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG0342|consensus Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0340|consensus Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0335|consensus Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>KOG0343|consensus Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>KOG0339|consensus Back     alignment and domain information
>KOG0338|consensus Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG4284|consensus Back     alignment and domain information
>KOG0326|consensus Back     alignment and domain information
>KOG0336|consensus Back     alignment and domain information
>KOG0341|consensus Back     alignment and domain information
>KOG0347|consensus Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0332|consensus Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0351|consensus Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0344|consensus Back     alignment and domain information
>KOG0334|consensus Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0346|consensus Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0952|consensus Back     alignment and domain information
>KOG0352|consensus Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>KOG0327|consensus Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG0353|consensus Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0337|consensus Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0947|consensus Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1513|consensus Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG0948|consensus Back     alignment and domain information
>KOG0949|consensus Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0950|consensus Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG0922|consensus Back     alignment and domain information
>KOG0329|consensus Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>KOG0349|consensus Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>PF08658 Rad54_N: Rad54 N terminal; InterPro: IPR013967 This is the N-terminal of the DNA repair protein Rad54 [] Back     alignment and domain information
>KOG0953|consensus Back     alignment and domain information
>KOG0920|consensus Back     alignment and domain information
>KOG0924|consensus Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG0926|consensus Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>KOG0923|consensus Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG1803|consensus Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG0925|consensus Back     alignment and domain information
>KOG1131|consensus Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>KOG1802|consensus Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1805|consensus Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG4150|consensus Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1132|consensus Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>KOG0989|consensus Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>KOG0740|consensus Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0738|consensus Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>KOG0952|consensus Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG0442|consensus Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0780|consensus Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>KOG0991|consensus Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query755
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 0.0
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 1e-54
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 1e-46
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 3e-44
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 3e-20
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure 
Iteration: 1

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/646 (67%), Positives = 525/646 (81%), Gaps = 8/646 (1%)
Query: 92  LGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQ 151
           LG+RR G RKALHDP    ALVLY PP +SAHDL+K DK+K+ VHVVVDPVLS +LRPHQ
Sbjct: 1   LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQ 60
Query: 152 REGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211
           REGVKF+++CVTG RIE++YGCIMADEMGLGKTLQCITL+WTLL+Q P  KP IDK I+V
Sbjct: 61  REGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVV 120
Query: 212 APSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYET 271
           +PSSLV+NW NE+ KWLGGRV  + IDGGSK EID+KL +F+   G R   PIL+ISYET
Sbjct: 121 SPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYET 180
Query: 272 FRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFS 331
           FR HA VLHK +VGLV+CDEGHRLKN ++QTY AL  + A+RRVL+SGTPIQNDLLEYFS
Sbjct: 181 FRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFS 240
Query: 332 LVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTS 391
           LVHFVN GILGTAQEF+K++E PIL+G+D+ ASD +R    ++L++LI IVNRCLIRRTS
Sbjct: 241 LVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTS 300
Query: 392 ALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLK 451
            +LSKYLPVK EQVVC  +T LQKELY   +K      +++ G   K+ +++LSSITSLK
Sbjct: 301 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTG---KISVSSLSSITSLK 357
Query: 452 KLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKM 511
           KLCNHP L+ +K  TG +GF+ A+++ P  Y+    +  +  +LS K++VLD +LA+ + 
Sbjct: 358 KLCNHPALIYEKCLTGEEGFDGALDLFPQNYS----TKAVEPQLSGKMLVLDYILAMTRT 413
Query: 512 TTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFM 570
           TT DK+VLVSNYTQTLDLFE+L + R Y YVRLDG+M+IKKRAK+VE FN  S+ EFIFM
Sbjct: 414 TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFM 473
Query: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630
           LSSKAGGCGLNLIGANRLVMFDPDWNPAND+QAMARVWRDGQKK C++YR LSTG+IEEK
Sbjct: 474 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEK 533
Query: 631 MMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQV 690
           ++QRQAHKKALSSCVVD E+DV RHFS+ ELR LF L E T+SDTHD+ +C RCVNG QV
Sbjct: 534 ILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQV 593
Query: 691 KPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHS 736
           +PPP +SDCT DLS WHH  +KR L DP+L+  W A VSFVF+Q S
Sbjct: 594 RPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRS 639
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query755
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 0.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-118
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-110
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 8e-96
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 1e-62
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 6e-56
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 2e-21
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 3e-15
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 7e-10
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 3e-09
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 5e-09
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 9e-07
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 2e-05
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
 Score =  972 bits (2514), Expect = 0.0
 Identities = 435/651 (66%), Positives = 527/651 (80%), Gaps = 8/651 (1%)

Query: 92  LGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQ 151
           LG+RR G RKALHDP    ALVLY PP +SAHDL+K DK+K+ VHVVVDPVLS +LRPHQ
Sbjct: 1   LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQ 60

Query: 152 REGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211
           REGVKF+++CVTG RIE++YGCIMADEMGLGKTLQCITL+WTLL+Q P  KP IDK I+V
Sbjct: 61  REGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVV 120

Query: 212 APSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYET 271
           +PSSLV+NW NE+ KWLGGRV  + IDGGSK EID+KL +F+   G R   PIL+ISYET
Sbjct: 121 SPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYET 180

Query: 272 FRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFS 331
           FR HA VLHK +VGLV+CDEGHRLKN ++QTY AL  + A+RRVL+SGTPIQNDLLEYFS
Sbjct: 181 FRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFS 240

Query: 332 LVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTS 391
           LVHFVN GILGTAQEF+K++E PIL+G+D+ ASD +R    ++L++LI IVNRCLIRRTS
Sbjct: 241 LVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTS 300

Query: 392 ALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLK 451
            +LSKYLPVK EQVVC  +T LQKELY   +K      +++ G   K+ +++LSSITSLK
Sbjct: 301 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTG---KISVSSLSSITSLK 357

Query: 452 KLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKM 511
           KLCNHP L+ +K  TG +GF+ A+++ P      Y +  +  +LS K++VLD +LA+ + 
Sbjct: 358 KLCNHPALIYEKCLTGEEGFDGALDLFPQN----YSTKAVEPQLSGKMLVLDYILAMTRT 413

Query: 512 TTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFM 570
           TT DK+VLVSNYTQTLDLFE+L + R Y YVRLDG+M+IKKRAK+VE FN  +S EFIFM
Sbjct: 414 TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFM 473

Query: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630
           LSSKAGGCGLNLIGANRLVMFDPDWNPAND+QAMARVWRDGQKK C++YR LSTG+IEEK
Sbjct: 474 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEK 533

Query: 631 MMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQV 690
           ++QRQAHKKALSSCVVD E+DV RHFS+ ELR LF L E T+SDTHD+ +C RCVNG QV
Sbjct: 534 ILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQV 593

Query: 691 KPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHSTKAEK 741
           +PPP +SDCT DLS WHH  +KR L DP+L+  W A VSFVF+Q S + ++
Sbjct: 594 RPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRSHEDQR 644
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query755
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 100.0
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 100.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 100.0
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 100.0
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
3h1t_A590 Type I site-specific restriction-modification syst 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 99.97
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 99.97
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 99.97
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 99.97
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 99.97
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.96
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.96
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.96
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.96
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.95
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.95
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.95
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 99.95
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.95
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.94
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.94
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 99.94
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.93
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.92
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.92
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.91
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.91
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.89
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.89
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.89
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 99.89
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.88
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.85
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.8
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.79
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.75
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.72
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.72
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.72
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.72
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.71
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.71
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.69
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.69
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.69
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.68
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.67
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 99.67
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.65
3rc3_A 677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.64
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.64
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.64
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.64
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.64
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.64
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 99.64
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.63
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.43
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.63
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.63
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.61
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.61
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.58
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.57
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.57
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.56
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.55
3jux_A 822 Protein translocase subunit SECA; protein transloc 99.55
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.54
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.54
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.53
3bor_A237 Human initiation factor 4A-II; translation initiat 99.52
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.5
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.46
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.45
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.43
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.41
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.23
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.19
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.05
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 98.75
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 98.63
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 98.21
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 97.63
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.25
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 97.12
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 97.06
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.04
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 96.95
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 96.53
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 96.35
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 96.31
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 96.3
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 96.2
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 95.59
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 95.58
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 95.41
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 95.41
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 95.26
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 94.42
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 94.39
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 94.02
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 93.87
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 93.71
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 93.69
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 93.56
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 93.05
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 92.87
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 92.84
3bos_A242 Putative DNA replication factor; P-loop containing 92.23
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 90.94
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 90.91
2chg_A226 Replication factor C small subunit; DNA-binding pr 90.58
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 89.94
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 89.82
2v1u_A387 Cell division control protein 6 homolog; DNA repli 89.14
2r2a_A199 Uncharacterized protein; zonular occludens toxin, 89.13
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 88.7
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 88.05
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 87.75
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 87.56
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 87.39
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 87.35
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 87.18
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 86.68
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 86.48
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 86.09
2gno_A305 DNA polymerase III, gamma subunit-related protein; 84.97
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 84.96
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 83.68
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 83.59
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 83.25
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 83.14
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 82.56
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 82.35
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 82.26
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 82.18
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 82.14
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 81.49
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 81.28
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 80.94
4dzz_A206 Plasmid partitioning protein PARF; deviant walker 80.5
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
Probab=100.00  E-value=7.8e-114  Score=1011.26  Aligned_cols=643  Identities=68%  Similarity=1.127  Sum_probs=588.8

Q ss_pred             cccccccccccCCCCCCCCcccccCCCCCChhhhhcccccccceeeeeCchhhcCCcHHHHHHHHHHHHHhhcccccCCc
Q psy5647          92 LGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAY  171 (755)
Q Consensus        92 ~~~~~~~~~~~~~dp~~~~~lv~~~p~~~~~~~~~~~~~~~~~~~v~v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~  171 (755)
                      ||+|+...++++|||..++++++|.||+++.++.++.+.+..++++++||.+...|||||++||+||++++.|.+..++.
T Consensus         1 ~~~~~~~~~~~l~dp~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~   80 (644)
T 1z3i_X            1 LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSY   80 (644)
T ss_dssp             CCSSCSSSCCCSSCTTSTTCCEEECCCCCCHHHHHHSCGGGSCCCEECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCC
T ss_pred             CCCCCCCCCCCCCCCCccCceecCCCCCCCHHHHhhhccccCCceEeeChhhhhcccHHHHHHHHHHHHhhhcccccCCC
Confidence            68888888999999999999999999999999988888888888999999999999999999999999999887666788


Q ss_pred             CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHHHH
Q psy5647         172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNS  251 (755)
Q Consensus       172 g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~  251 (755)
                      ||||||+||+|||+|+|++++.++..++..+|..+++|||||.+++.||.+||.+|++..+.++.++++.+......+..
T Consensus        81 g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~  160 (644)
T 1z3i_X           81 GCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVN  160 (644)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHH
T ss_pred             CeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHH
Confidence            99999999999999999999999999888888888999999999999999999999987777888888887777777777


Q ss_pred             HHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHH
Q psy5647         252 FMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFS  331 (755)
Q Consensus       252 ~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~s  331 (755)
                      +....+.....+|+|+||++++.+...+....|++|||||||++||..+++++++..+++++||+|||||++|++.|||+
T Consensus       161 ~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~s  240 (644)
T 1z3i_X          161 FISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFS  240 (644)
T ss_dssp             HHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHH
T ss_pred             HHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHH
Confidence            76655544567899999999999999898899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCC
Q psy5647         332 LVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMT  411 (755)
Q Consensus       332 ll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls  411 (755)
                      +++|++|+.+++..+|.+.|..||..+++.+++..+...+.+++.+|+.++.+|++||+++++..+||++.+.+++|+||
T Consensus       241 ll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls  320 (644)
T 1z3i_X          241 LVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLT  320 (644)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCC
T ss_pred             HHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhh
Q psy5647         412 DLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL  491 (755)
Q Consensus       412 ~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (755)
                      +.|+++|+.++........+..+   ......+..++.||++||||.++........++++.....+|..+.    ....
T Consensus       321 ~~q~~lY~~~~~~~~~~~~~~~g---~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  393 (644)
T 1z3i_X          321 PLQKELYKLFLKQAKPVESLQTG---KISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYS----TKAV  393 (644)
T ss_dssp             HHHHHHHHHHHHHHCGGGSSCTT---CCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCC----SSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC---ccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhcccccc----cccc
Confidence            99999999997654322112222   2345678999999999999999988776666666666666666552    2334


Q ss_pred             hHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCC-ceEEE
Q psy5647         492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFM  570 (755)
Q Consensus       492 ~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~-~~v~L  570 (755)
                      ....|+|+.+|..++..++...++|+||||+++.+++.|+.+|...|+.+.+++|+++.++|++++++|+++.. .++||
T Consensus       394 ~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L  473 (644)
T 1z3i_X          394 EPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFM  473 (644)
T ss_dssp             CGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEE
T ss_pred             CcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Confidence            45679999999999999876678999999999999999999999999999999999999999999999999544 56899


Q ss_pred             eecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCch
Q psy5647         571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEE  650 (755)
Q Consensus       571 lSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~  650 (755)
                      +|+++||+||||++|++||+||++|||+.+.||+||+||+||+++|+||+|++.||+||+|+++|..|+.+++.++++++
T Consensus       474 ~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~  553 (644)
T 1z3i_X          474 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQ  553 (644)
T ss_dssp             EEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSS
T ss_pred             EecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hhhccCCHHHHHhccccCCCCccccccccccccccCCcccCCCCCCCCCcccccccccccCCCCCCchHHHhhhcccccE
Q psy5647         651 DVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSF  730 (755)
Q Consensus       651 ~~~~~~s~~el~~Lf~~~~~~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~  730 (755)
                      ...+.|+.+||++||++++++.|+|||.++|.+|.++.+..+|+++.++++|+++|+|+.+.++++|++|+++|+..|||
T Consensus       554 ~~~~~~~~~~l~~Lf~~~~~~~~~t~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  633 (644)
T 1z3i_X          554 DVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSF  633 (644)
T ss_dssp             SCCCSSCHHHHHHHTCCCSSCSCHHHHHHTCSSEETTEECSCCCTTCCTTSCGGGSEEESSSTTCSCHHHHHHCSTTEEE
T ss_pred             hhhcCCCHHHHHHHhCCCCCccchhhhhhhCccCCCCcccCCChhcccchhhhhhceeccccCCCCcHHHHHhhcCCeEE
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeccchhhh
Q psy5647         731 VFYQHSTKAEK  741 (755)
Q Consensus       731 ~~~~~~~~~~~  741 (755)
                      ||+++||++|+
T Consensus       634 ~~~~~~~~~~~  644 (644)
T 1z3i_X          634 VFHQRSHEDQR  644 (644)
T ss_dssp             EEEEESSCTTC
T ss_pred             EEecccccccC
Confidence            99999999874
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 755
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 1e-92
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 3e-87
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 6e-36
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 2e-34
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 4e-16
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 1e-14
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 5e-08
d1rifa_282 c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 6e-04
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score =  291 bits (744), Expect = 1e-92
 Identities = 225/353 (63%), Positives = 278/353 (78%), Gaps = 8/353 (2%)

Query: 390 TSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITS 449
           TS +LSKYLPVK EQVVC  +T LQKELY   +K      +++ G   K+ +++LSSITS
Sbjct: 1   TSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTG---KISVSSLSSITS 57

Query: 450 LKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVI 509
           LKKLCNHP L+ +K  TG +GF+ A+++ P     +Y +  +  +LS K++VLD +LA+ 
Sbjct: 58  LKKLCNHPALIYEKCLTGEEGFDGALDLFPQ----NYSTKAVEPQLSGKMLVLDYILAMT 113

Query: 510 KMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF-NKTSNEFI 568
           + TT DK+VLVSNYTQTLDLFE+L + R Y YVRLDG+M+IKKRAK+VE F N +S EFI
Sbjct: 114 RTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFI 173

Query: 569 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIE 628
           FMLSSKAGGCGLNLIGANRLVMFDPDWNPAND+QAMARVWRDGQKK C++YR LSTG+IE
Sbjct: 174 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIE 233

Query: 629 EKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGI 688
           EK++QRQAHKKALSSCVVD E+DV RHFS+ ELR LF L E T+SDTHD+ +C RCVNG 
Sbjct: 234 EKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGR 293

Query: 689 QVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHSTKAEK 741
           QV+PPP +SDCT DLS WHH  +KR L DP+L+  W A VSFVF+Q S + ++
Sbjct: 294 QVRPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRSHEDQR 346
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query755
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.87
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.84
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.8
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.79
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.77
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.77
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.75
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.75
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.73
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.71
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.69
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.67
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.62
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.59
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.52
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.51
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.45
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.41
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.39
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.38
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.37
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.25
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.18
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.15
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.05
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.02
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.01
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 98.96
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 98.93
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 98.87
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.83
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.82
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.78
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.77
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.76
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.73
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.72
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.07
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 97.78
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 97.22
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 96.68
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 96.62
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 96.25
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.17
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 95.89
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 93.34
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 92.81
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 92.54
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 91.9
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 90.95
d1okkd2207 GTPase domain of the signal recognition particle r 90.63
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 90.07
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 90.01
d2qy9a2211 GTPase domain of the signal recognition particle r 89.44
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 89.14
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 89.03
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 88.8
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 88.17
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 88.12
d1vmaa2213 GTPase domain of the signal recognition particle r 87.88
d1ls1a2207 GTPase domain of the signal sequence recognition p 86.78
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 85.31
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 85.07
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 84.06
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 83.94
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 82.06
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 81.91
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 81.53
d1j8yf2211 GTPase domain of the signal sequence recognition p 80.67
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 80.52
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 80.49
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=5.4e-66  Score=554.24  Aligned_cols=345  Identities=65%  Similarity=1.070  Sum_probs=311.3

Q ss_pred             chhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCcc
Q psy5647         390 TSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGAD  469 (755)
Q Consensus       390 t~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~  469 (755)
                      |++.+.++||||.+++++|+||+.|+++|+.+++....   .............|..++.|||+||||.|+.........
T Consensus         1 t~~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~---~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~   77 (346)
T d1z3ix1           1 TSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKP---VESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEE   77 (346)
T ss_dssp             CGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCG---GGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCT
T ss_pred             ChhhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHH---HHhhhcCCchHHHHHHHHHHHHHhCCHHHhhhhhccccc
Confidence            45667789999999999999999999999999765421   122222234456899999999999999999988877777


Q ss_pred             chhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCC
Q psy5647         470 GFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT  549 (755)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~  549 (755)
                      +++......+..+    ......+..|+|+.+|..+|..++...++||||||+|+.++++|+.+|...|++|.+++|+++
T Consensus        78 ~~~~~~~~~~~~~----~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~  153 (346)
T d1z3ix1          78 GFDGALDLFPQNY----STKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMS  153 (346)
T ss_dssp             TCTTGGGTSCSSC----CSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCC
T ss_pred             cccchhhhccccc----cccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchh
Confidence            7777777666655    333445678999999999999987777899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCC-CceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHH
Q psy5647         550 IKKRAKVVETFNKTS-NEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIE  628 (755)
Q Consensus       550 ~~~R~~~v~~Fn~~~-~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiE  628 (755)
                      .++|++++++||++. ..+|||+|++|||+||||++|++||+||++|||+.+.||+||+||+||+++|+||||++.||||
T Consensus       154 ~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiE  233 (346)
T d1z3ix1         154 IKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIE  233 (346)
T ss_dssp             HHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHH
T ss_pred             HHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHH
Confidence            999999999999854 4579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHhhhhCCchhhhccCCHHHHHhccccCCCCccccccccccccccCCcccCCCCCCCCCccccccccc
Q psy5647         629 EKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHH  708 (755)
Q Consensus       629 EkI~~r~~~K~~l~~~vv~~~~~~~~~~s~~el~~Lf~~~~~~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (755)
                      |+||++|..|+.+++.|++++++..+.||.+||++||++++++.|+|||.+.|.+|..+.+..++++..+.++++.+|.|
T Consensus       234 e~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~lf~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  313 (346)
T d1z3ix1         234 EKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHH  313 (346)
T ss_dssp             HHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCSSCSCHHHHHHTCSSEETTEECSCCCTTCCTTSCGGGSEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCchhhhhcCCHHHHHHHhcCCCcccccchhhhccccccccccccCCcccccchhhHHHHHh
Confidence            99999999999999999999888889999999999999999999999999999999999999888888889999999999


Q ss_pred             ccCCCCCCchHHHhhhcccccEEEeeccchhhh
Q psy5647         709 VTEKRWLVDPILKHCWGAGVSFVFYQHSTKAEK  741 (755)
Q Consensus       709 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~  741 (755)
                      +.+..+++|++|.++|+..|||||++.||++|+
T Consensus       314 ~~~~~~~~d~~l~~~~~~~~sfv~~~~~~~~~~  346 (346)
T d1z3ix1         314 CADKRGLRDPVLQASWDAAVSFVFHQRSHEDQR  346 (346)
T ss_dssp             ESSSTTCSCHHHHHHCSTTEEEEEEEESSCTTC
T ss_pred             hcCcccCCCHHHHhcccCCceEEEeccCccccC
Confidence            999999999999999999999999999999874
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure