Psyllid ID: psy5765

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
TFGTCVVEKALNLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGLSDGLRVSGLH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccEccccc
Coil and Loop (DISEMBL)
TFGTCVVEKalnlgpsgrlrylgpsgslrylgpsgslrylgpsgrlrylgpsgslrylgpsgrlrylgpsgrlrylgpsgslrylgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlnsdgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlrylglsdglrvsglh
Flexible Loop (DISEMBL)
tfgtcvvekalnlgpsgrlryLGPSGSLRYLGPSGSLRYLGPSGRLRYLgpsgslrylgpsgrlrylgpsgrlrylgpsgslrylgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlnsdgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlrylgpsgrlrylglsdglrvsglh
Low Complexity Region (SEG)
TFGTCVVEKALNLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGLSDGLRVSGLH
Disordered region (IsUnstruct)
***TCVVEKALNLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL***************RYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGLS*********
Disordered Region (DISOPRED)
TFGTCVVEKALNLGPSG**************************************************************************************************************************************************************GPSG*LR***********************
Disordered Region (DISEMBL)
TFGTCVVEKALNLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGLSDGLRVSGLH
Disordered Region (DISPRO)
****************************************************************************************************************************************************************************************GPSGRLRYLGLSDGLRV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TFGTCVVEKALNLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGLSDGLRVSGLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
O42350	1355	Collagen alpha-2(I) chain	N/A	N/A	0.746	0.112	0.339	2e-07
O94913	1555	Pre-mRNA cleavage complex	yes	N/A	0.829	0.109	0.354	5e-07

>sp|O42350|CO1A2_LITCT Collagen alpha-2(I) chain OS=Lithobates catesbeiana GN=COL1A2 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 63/159 (39%), Gaps = 6/159 (3%)

Query: 13  LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
            GPSG     G  G     GP+G   + GP G   + G  G     GP G     GP G 
Sbjct: 690 AGPSGVAGPRGAPGERGEAGPAGPTGFAGPPGAAGHTGAKGDRGAKGPKGEAGSPGPLGA 749

Query: 73  LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
               GP+G     G +G     GPSG   + GP+GR    GP G +   GP+G    DG 
Sbjct: 750 HGSAGPAGPNGPAGSTGARGDAGPSGATGFPGPAGRAGAPGPPGNVGPSGPTGHPGKDGS 809

Query: 133 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 171
            G     GP GR       G     GP G     GPSG 
Sbjct: 810 RGPRGDSGPVGR------PGEQGQHGPVGLAGDKGPSGE 842

Type I collagen is a member of group I collagen (fibrillar forming collagen).
Lithobates catesbeiana (taxid: 8400)

>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens GN=PCF11 PE=1 SV=3

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 110/223 (49%), Gaps = 53/223 (23%)

Query: 19   LRYLGPSGSLRYLGPSGSLRYLGPSGR----LRYLG----PSGSLRYLGPSGR----LRY 66
             R+ G  G LR+ G  G LR+ GP G+    LR+ G    P G LR+ GP G+    LR+
Sbjct: 846  FRFEGSPG-LRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRF 904

Query: 67   LGPSGRLRYLGPSGSLRYL---GPSG-RLRYLGPSGR----LRYLGPSGR----LRYLGP 114
              P G+     P G LR+    GPSG  +R+ GP G+    +R+ GP  +    +R+ GP
Sbjct: 905  DNPRGQ-----PVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGP 959

Query: 115  SGR----LRYLGPSGRLNSDGPSGRLRYLGPSGR----LRYLGP----SGRLRYLGPS-- 160
             G+    LR+ G   +L      G LR+ GP G+    +R+ GP     G +R+ GPS  
Sbjct: 960  HGQSVAGLRFEGQHNQL-----GGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVP 1014

Query: 161  -GRLRYLGPSGR--LRYLGPSGRLRYLGPSGRLRYLGLSDGLR 200
             G LR  GP G+   R+ G    LR+ G  G+   L   DGL 
Sbjct: 1015 GGGLRIEGPLGQGGPRFEG-CHALRFDGQPGQPSLLPRFDGLH 1056

Component of pre-mRNA cleavage complex II.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
150017445	914	triple helix repeat-containing collagen	0.882	0.198	0.331	3e-28
291235606	277	PREDICTED: hypothetical protein [Saccogl	0.917	0.678	0.287	3e-25
288870437	474	hypothetical Membrane Spanning Protein [	0.858	0.371	0.340	8e-24
359411481	701	Collagen triple helix repeat-containing	0.897	0.262	0.326	2e-23
150017446	2411	triple helix repeat-containing collagen	0.873	0.074	0.291	4e-22
325289692	764	collagen triple helix repeat-containing	0.892	0.239	0.333	8e-22
294931678	347	spliceosome-associated protein, putative	0.858	0.507	0.529	1e-21
168333610	2187	hypothetical protein Epulo_01906 [Epulop	0.843	0.079	0.340	1e-20
325290147	559	collagen triple helix repeat-containing	0.917	0.336	0.335	2e-20
190694321	1129	polymorphic mucin truncated splice varia	0.858	0.155	0.352	1e-19

>gi|150017445|ref|YP_001309699.1| triple helix repeat-containing collagen [Clostridium beijerinckii NCIMB 8052] gi|149903910|gb|ABR34743.1| Collagen triple helix repeat [Clostridium beijerinckii NCIMB 8052]

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 84/184 (45%)

Query: 13  LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
            GP+G     GP+G     GP+G     GP+G     GP+G     GP+G     GP+G 
Sbjct: 283 TGPTGDTGATGPTGDTGVTGPTGDTGATGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGD 342

Query: 73  LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
               GP+G     GP+G     GP+G     GP+G     GP+G     GP+G   + GP
Sbjct: 343 TGVTGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGATGP 402

Query: 133 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY 192
           +G     GP+G     GP+G     GP+G     GP+G     GP+G     GP+G    
Sbjct: 403 TGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGATGPTGDTGVTGPTGDTGVTGPTGDTGD 462

Query: 193 LGLS 196
            G++
Sbjct: 463 TGVT 466

Source: Clostridium beijerinckii NCIMB 8052

Species: Clostridium beijerinckii

Genus: Clostridium

Family: Clostridiaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|291235606|ref|XP_002737736.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 81/205 (39%), Gaps = 17/205 (8%)

Query: 7   VEKALNLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPS----GSLRYLGPSG 62
           +   +   PS  + Y  PS  + Y  PS  ++Y  PS  + Y  PS      + Y  PS 
Sbjct: 51  IVDVMYTSPSVDVMYTSPSVDVMYTSPSVEVKYTSPSVDVMYTSPSVDVIVDVMYTSPSV 110

Query: 63  RLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLG 122
            + Y  PS  + Y  PS  + Y  PS  + Y  PS  + Y+ PS  + Y  PS  + Y  
Sbjct: 111 DVMYTSPSVDVMYTSPSVDVMYTSPSVDVMYTSPSVDVMYISPSVDVMYTSPSVDVMYTS 170

Query: 123 PSGRL-------------NSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPS 169
           PS  +                 PS    Y  PS  + Y  PS  + Y  PS    Y  PS
Sbjct: 171 PSVDVVYTSASVDVVVDVVYTSPSVDAMYTSPSVDVMYTSPSVDVMYTSPSVDAMYTSPS 230

Query: 170 GRLRYLGPSGRLRYLGPSGRLRYLG 194
             + Y  PS  + Y  PS  + Y  
Sbjct: 231 VDVMYTSPSVEVMYTSPSVDVMYTS 255

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|288870437|ref|ZP_06114100.2| hypothetical Membrane Spanning Protein [Clostridium hathewayi DSM 13479] gi|288867183|gb|EFC99481.1| hypothetical Membrane Spanning Protein [Clostridium hathewayi DSM 13479]

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 85/176 (48%)

Query: 13  LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
            GP+G     GP+G+    GP+G+    GP+G     GP+G+    GP+G     GP+G 
Sbjct: 259 TGPTGAAGATGPTGAAGATGPTGAAGATGPTGADGVTGPTGADGVTGPTGAAGATGPTGA 318

Query: 73  LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
               GP+G+    GP+G     GP+G     GP+G     GP+G     GP+G   + GP
Sbjct: 319 AGATGPTGAAGATGPTGAAGVTGPTGADGVTGPTGADGVTGPTGAAGATGPTGADGATGP 378

Query: 133 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
           +G     GP+G     GP+G     GP+G     GP+G     GP+G     GP+G
Sbjct: 379 TGAAGATGPTGAAGATGPTGADGATGPTGAAGATGPTGADGATGPTGAAGATGPTG 434

Source: Clostridium hathewayi DSM 13479

Species: Clostridium hathewayi

Genus: Clostridium

Family: Clostridiaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|359411481|ref|ZP_09203946.1| Collagen triple helix repeat-containing protein [Clostridium sp. DL-VIII] gi|357170365|gb|EHI98539.1| Collagen triple helix repeat-containing protein [Clostridium sp. DL-VIII]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 83/190 (43%), Gaps = 6/190 (3%)

Query: 13  LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLR---YLGP 69
            GP+G     GP+G     GP+G     GP+G     GP+G     GP+G        GP
Sbjct: 358 TGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGDTGVTGP 417

Query: 70  SGRLRYLGPSGSLR---YLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGR 126
           +G     GP+G        GP+G     GP+G     GP+G     GP+G     GP+G 
Sbjct: 418 TGDTGVTGPTGDTGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGD 477

Query: 127 LNSDGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGP 186
               GP+G     GP+G     GP+G     GP+G     GP+G     GP+G     GP
Sbjct: 478 TGVTGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGVTGPTGDTGVTGP 537

Query: 187 SGRLRYLGLS 196
           +G     GL+
Sbjct: 538 TGDTGATGLT 547

Source: Clostridium sp. DL-VIII

Species: Clostridium sp. DL-VIII

Genus: Clostridium

Family: Clostridiaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|150017446|ref|YP_001309700.1| triple helix repeat-containing collagen [Clostridium beijerinckii NCIMB 8052] gi|149903911|gb|ABR34744.1| Collagen triple helix repeat [Clostridium beijerinckii NCIMB 8052]

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 74/182 (40%)

Query: 13  LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
            G +G     GP+G     GP+G     G +G     GP+G     G +G     GP+G 
Sbjct: 680 TGATGDTGVTGPTGDTGVTGPTGDTGVTGATGDTGVTGPTGDTGATGSTGDTGATGPTGD 739

Query: 73  LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
               GP+G     GP+G     G +G     GP+G     G +G     GP+G   + G 
Sbjct: 740 TGVTGPTGDAGITGPTGNTGVTGATGDTGITGPTGDTGVTGATGDTGVTGPTGDTGATGS 799

Query: 133 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY 192
           +G     GP+G     G +G     GP+G     GP+G     GP+G     G +G    
Sbjct: 800 TGDTGATGPTGDTGVTGATGDTGVTGPTGDTGITGPTGDTGVTGPTGDTGATGSTGDTGV 859

Query: 193 LG 194
            G
Sbjct: 860 TG 861

Source: Clostridium beijerinckii NCIMB 8052

Species: Clostridium beijerinckii

Genus: Clostridium

Family: Clostridiaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|325289692|ref|YP_004265873.1| collagen triple helix repeat-containing protein [Syntrophobotulus glycolicus DSM 8271] gi|324965093|gb|ADY55872.1| Collagen triple helix repeat-containing protein [Syntrophobotulus glycolicus DSM 8271]

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 82/183 (44%)

Query: 12  NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
             GP+G     GP+G+    GP+G     GP+G     GP+G     GP+G     GP+G
Sbjct: 381 ETGPTGVTGETGPTGATGETGPTGVTGETGPTGVTGETGPTGVTGETGPTGATGETGPTG 440

Query: 72  RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
                GP+G     GP+G     GP+G     GP+G     GP+G     GP+G     G
Sbjct: 441 VTGETGPTGVTGEAGPTGVTGETGPTGATGETGPTGVTGETGPTGVTGEAGPTGVTGETG 500

Query: 132 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLR 191
           P+G     GP+G     GP+G     GP+G     GP+G     GP+G     GP+G   
Sbjct: 501 PTGVTGETGPTGVTGETGPTGATGETGPTGATGETGPTGVTGEAGPTGVTGETGPTGATG 560

Query: 192 YLG 194
             G
Sbjct: 561 ETG 563

Source: Syntrophobotulus glycolicus DSM 8271

Species: Syntrophobotulus glycolicus

Genus: Syntrophobotulus

Family: Peptococcaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|294931678|ref|XP_002779967.1| spliceosome-associated protein, putative [Perkinsus marinus ATCC 50983] gi|239889740|gb|EER11762.1| spliceosome-associated protein, putative [Perkinsus marinus ATCC 50983]

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/185 (52%), Positives = 109/185 (58%)

Query: 12  NLGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSG 71
            LGPS RL  LGPS  +  LGPS  +  LGPS R   LGPS  +  LG S RL     S 
Sbjct: 161 PLGPSLRLPPLGPSRRVPLLGPSRRVPLLGPSLRPPPLGPSHRVPLLGLSLRLPVQKLSL 220

Query: 72  RLRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDG 131
           RL  LGPS     LGPS R   LGPS RL  LGPS R+  LGPS R+  LGPS R    G
Sbjct: 221 RLPLLGPSLRPPPLGPSLRPPPLGPSLRLPPLGPSRRVPLLGPSRRVPLLGPSLRPPPLG 280

Query: 132 PSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLR 191
           PS R+  LGPS R+  LGP  R+  LGPS R+  LGPS R+  LGPS RL  LGPS R+ 
Sbjct: 281 PSRRVPLLGPSRRVPLLGPLPRVPLLGPSRRVPLLGPSRRVPLLGPSHRLPPLGPSHRVP 340

Query: 192 YLGLS 196
            LG S
Sbjct: 341 LLGPS 345

Source: Perkinsus marinus ATCC 50983

Species: Perkinsus marinus

Genus: Perkinsus

Family: Perkinsidae

Order: Perkinsida

Superkingdom: Eukaryota

>gi|168333610|ref|ZP_02691870.1| hypothetical protein Epulo_01906 [Epulopiscium sp. 'N.t. morphotype B']

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 86/176 (48%)

Query: 13  LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
            GP G +   GP G +   GP G +  +GP G +  +GP G +   GP G +   GP G 
Sbjct: 362 AGPQGEIGQAGPQGEVGPAGPQGEVGSVGPQGEVGPVGPQGEVGPAGPQGEVGPAGPQGE 421

Query: 73  LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
           +   GP G +  +GP G +  +GP G +   GP G +  +GP G +  +GP G + S GP
Sbjct: 422 VGPAGPQGEVGPVGPQGEIGPVGPQGEVGPAGPQGEVGPVGPQGEIGPVGPQGEVGSVGP 481

Query: 133 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
            G +  +GP G +   GP G +  +GP G +   GP G +   GP G     G  G
Sbjct: 482 QGEVGSVGPQGEVGPAGPQGEVGPVGPQGEVGPAGPQGEVGTQGPKGESGAKGDQG 537

Source: Epulopiscium sp. 'N.t. morphotype B'

Species: Epulopiscium sp. 'N.t. morphotype B'

Genus: Epulopiscium

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|325290147|ref|YP_004266328.1| collagen triple helix repeat-containing protein [Syntrophobotulus glycolicus DSM 8271] gi|324965548|gb|ADY56327.1| Collagen triple helix repeat-containing protein [Syntrophobotulus glycolicus DSM 8271]

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 88/188 (46%)

Query: 13  LGPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGR 72
            GP+G     GP+G+    GP+G+    GP+G     GP+G+    GP+G     GP+G 
Sbjct: 239 TGPTGNTGPTGPTGNTGPTGPTGNTGPTGPTGNTGPTGPTGNTGPTGPTGNTGPTGPTGN 298

Query: 73  LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP 132
               GP+G+    GP+G     GP+G     GP+G     GP+G     GP+G     GP
Sbjct: 299 TGPTGPTGNTGPTGPTGNTGPTGPTGNTGPTGPTGNTGPTGPTGNTGPTGPTGNTGPTGP 358

Query: 133 SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY 192
           +G     GP+G     GP+G     GP+G     GP+G     GP+G     GP+G    
Sbjct: 359 TGNTGPTGPTGNTGPTGPTGNTGPTGPTGNTGPTGPTGNTGPTGPTGNTGPTGPTGNTGP 418

Query: 193 LGLSDGLR 200
            G +  LR
Sbjct: 419 TGPTSVLR 426

Source: Syntrophobotulus glycolicus DSM 8271

Species: Syntrophobotulus glycolicus

Genus: Syntrophobotulus

Family: Peptococcaceae

Order: Clostridiales

Class: Clostridia

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|190694321|gb|ACE88727.1| polymorphic mucin truncated splice variant C4/2/100r2.1 [Schistosoma mansoni]

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 82/176 (46%)

Query: 15  PSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRLR 74
           P+G L    P+G L    P+G L    P+G L    P+G L    P+G L    P+G L 
Sbjct: 26  PTGDLASDKPTGDLASDKPTGDLASDKPTGDLASDKPTGDLASDKPTGDLASDKPTGDLA 85

Query: 75  YLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPSG 134
              P+G L    P+G L    P+G L    P+G L    P+G L    P+G L SD P+G
Sbjct: 86  SDKPTGDLASDKPTGDLASDKPTGDLASDKPTGDLASDKPTGDLASDKPTGDLASDKPTG 145

Query: 135 RLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
            L    P+G L    P+G L    P+G L    P+G L    P+G L    P+G L
Sbjct: 146 DLASDKPTGDLASDKPTGDLASDKPTGDLASDKPTGDLASDKPTGDLASDKPTGDL 201

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
UNIPROTKB|Q81JD7	382	bclA "Uncharacterized protein"	0.892	0.479	0.322	1.2e-17
TIGR_CMR|BA_1222	382	BA_1222 "conserved hypothetica	0.892	0.479	0.322	1.2e-17
UNIPROTKB|F1LS40	1372	Col1a2 "Collagen alpha-2(I) ch	0.873	0.130	0.340	1.3e-15
RGD|621351	1372	Col1a2 "collagen, type I, alph	0.873	0.130	0.340	1.3e-15
ZFIN|ZDB-GENE-030131-4400	1449	col1a1b "collagen, type I, alp	0.878	0.124	0.344	3e-15
UNIPROTKB|P02465	1364	COL1A2 "Collagen alpha-2(I) ch	0.902	0.135	0.340	4.5e-15
UNIPROTKB|P08123	1366	COL1A2 "Collagen alpha-2(I) ch	0.902	0.135	0.319	4.6e-15
MGI|MGI:88468	1372	Col1a2 "collagen, type I, alph	0.887	0.132	0.335	9.5e-15
UNIPROTKB|O94913	1555	PCF11 "Pre-mRNA cleavage compl	0.780	0.102	0.370	1.4e-14
ZFIN|ZDB-GENE-030131-8415	1352	col1a2 "collagen, type I, alph	0.780	0.118	0.342	1.5e-14

UNIPROTKB|Q81JD7 bclA "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 219 (82.2 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 60/186 (32%), Positives = 82/186 (44%)

Query:    14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
             GP+G     GP+G     G +G+    GP+G     GP+G     GP+G     GP+G  
Sbjct:    53 GPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPT 112

Query:    74 RYLGPSGSLRYLGPSGRLRYLGPSGRLR---YLGPSGRLRYLGPSGRLRYLGPSGRLNSD 130
                GP+G     GP+G     GP+G        GP+G     GP+G     GP+G     
Sbjct:   113 GPTGPTGDTGTTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGPTGPTGPTGPT 172

Query:   131 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
             GP+G     GP+G     GP+G     GP+G     G +G     GP+G     GP+G  
Sbjct:   173 GPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGPTGPT 232

Query:   191 RYLGLS 196
                GL+
Sbjct:   233 GATGLT 238

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_1222 BA_1222 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 219 (82.2 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 60/186 (32%), Positives = 82/186 (44%)

Query:    14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
             GP+G     GP+G     G +G+    GP+G     GP+G     GP+G     GP+G  
Sbjct:    53 GPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPT 112

Query:    74 RYLGPSGSLRYLGPSGRLRYLGPSGRLR---YLGPSGRLRYLGPSGRLRYLGPSGRLNSD 130
                GP+G     GP+G     GP+G        GP+G     GP+G     GP+G     
Sbjct:   113 GPTGPTGDTGTTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGPTGPTGPTGPT 172

Query:   131 GPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
             GP+G     GP+G     GP+G     GP+G     G +G     GP+G     GP+G  
Sbjct:   173 GPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGDTGTTGPTGPTGPTGPTGPTGPTGPT 232

Query:   191 RYLGLS 196
                GL+
Sbjct:   233 GATGLT 238

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1LS40 Col1a2 "Collagen alpha-2(I) chain" [Rattus norvegicus (taxid:10116)]

 Score = 210 (79.0 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 63/185 (34%), Positives = 79/185 (42%)

Query:    14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
             G  G     GPSG     G  G    +GP+G   + GP+GS    G  G     GP G  
Sbjct:   697 GDRGEAGAAGPSGPAGPRGSPGERGEVGPAGPNGFAGPAGSAGQPGAKGEKGTKGPKGEN 756

Query:    74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP- 132
               +GP+G +   GPSG     GP+G     GP G   + G +GR    GPSG     GP 
Sbjct:   757 GIVGPTGPVGAAGPSGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGITGPPGPP 816

Query:   133 --SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
               +G+    GP G    +G +G +   GP G     GPSG     GP G     GP G L
Sbjct:   817 GAAGKEGIRGPRGDQGPVGRTGEIGASGPPGFAGEKGPSGEPGTTGPPGTA---GPQGLL 873

Query:   191 RYLGL 195
                G+
Sbjct:   874 GAPGI 878

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005581 "collagen" evidence=IEA

RGD|621351 Col1a2 "collagen, type I, alpha 2" [Rattus norvegicus (taxid:10116)]

 Score = 210 (79.0 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 63/185 (34%), Positives = 79/185 (42%)

Query:    14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
             G  G     GPSG     G  G    +GP+G   + GP+GS    G  G     GP G  
Sbjct:   697 GDRGEAGAAGPSGPAGPRGSPGERGEVGPAGPNGFAGPAGSAGQPGAKGEKGTKGPKGEN 756

Query:    74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGP- 132
               +GP+G +   GPSG     GP+G     GP G   + G +GR    GPSG     GP 
Sbjct:   757 GIVGPTGPVGAAGPSGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGITGPPGPP 816

Query:   133 --SGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRL 190
               +G+    GP G    +G +G +   GP G     GPSG     GP G     GP G L
Sbjct:   817 GAAGKEGIRGPRGDQGPVGRTGEIGASGPPGFAGEKGPSGEPGTTGPPGTA---GPQGLL 873

Query:   191 RYLGL 195
                G+
Sbjct:   874 GAPGI 878

GO:0001501 "skeletal system development" evidence=ISO

GO:0001568 "blood vessel development" evidence=ISO

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005581 "collagen" evidence=IEA;ISO

GO:0005584 "collagen type I" evidence=ISO

GO:0005615 "extracellular space" evidence=ISO

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=ISO

GO:0007266 "Rho protein signal transduction" evidence=ISO

GO:0008217 "regulation of blood pressure" evidence=ISO

GO:0030199 "collagen fibril organization" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043589 "skin morphogenesis" evidence=ISO

GO:0046332 "SMAD binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048407 "platelet-derived growth factor binding" evidence=ISO

GO:0070062 "extracellular vesicular exosome" evidence=ISO

GO:0070208 "protein heterotrimerization" evidence=ISO

GO:0071230 "cellular response to amino acid stimulus" evidence=ISO

GO:0031012 "extracellular matrix" evidence=ISO

ZFIN|ZDB-GENE-030131-4400 col1a1b "collagen, type I, alpha 1b" [Danio rerio (taxid:7955)]

 Score = 207 (77.9 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 64/186 (34%), Positives = 79/186 (42%)

Query:    14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
             G  G     GP G     GP+G +   GP G     GP G+    GP G   + G +GR+
Sbjct:   811 GAKGETGDSGPKGDAGAPGPAGPVGASGPQGPAGATGPKGARGGAGPPGATGFPGAAGRV 870

Query:    74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
                GPSG+    GP+G     G  G     GP+GR    G +G     GPSG   S GP 
Sbjct:   871 GPPGPSGASGPPGPTGPAGKEGQRGARGEKGPAGRPGEAGAAGPP---GPSGERGSPGPD 927

Query:   134 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRY---LGPSGRLRYLGPSGRLRYLGPSGRL 190
             G L   G  G    +G  G +   G  G   +    GPSG     GPSG +   GP G +
Sbjct:   928 GPLGLAGAPGPPGVIGSRGIVGLPGQRGERGFGGLAGPSGEPGKQGPSGPVGERGPPGPM 987

Query:   191 RYLGLS 196
                GLS
Sbjct:   988 GPPGLS 993

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005581 "collagen" evidence=IEA

UNIPROTKB|P02465 COL1A2 "Collagen alpha-2(I) chain" [Bos taurus (taxid:9913)]

 Score = 205 (77.2 bits), Expect = 4.5e-15, P = 4.5e-15
 Identities = 65/191 (34%), Positives = 81/191 (42%)

Query:    14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
             GP+G     G  G    +GP+G   + GP+G     G  G     GP G    +GP+G +
Sbjct:   698 GPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPV 757

Query:    74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
                GPSG     GP+G     GP G   + G +GR    GPSG     GP G     GP+
Sbjct:   758 GAAGPSGPNGPPGPAGSRGDGGPPGATGFPGAAGRTGPPGPSG---ISGPPG---PPGPA 811

Query:   134 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL 193
             G+    GP G    +G SG     GP G +   GPSG     GP G     G  G   +L
Sbjct:   812 GKEGLRGPRGDQGPVGRSGETGASGPPGFVGEKGPSGEPGTAGPPGTPGPQGLLGAPGFL 871

Query:   194 GLSDGLRVSGL 204
             GL       GL
Sbjct:   872 GLPGSRGERGL 882

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA

GO:0070208 "protein heterotrimerization" evidence=IEA

GO:0048407 "platelet-derived growth factor binding" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0043589 "skin morphogenesis" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0030199 "collagen fibril organization" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005584 "collagen type I" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

UNIPROTKB|P08123 COL1A2 "Collagen alpha-2(I) chain" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 4.6e-15, P = 4.6e-15
 Identities = 61/191 (31%), Positives = 81/191 (42%)

Query:    14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
             G  G     GP+G     G  G    +GP+G   + GP+G+    G  G     GP G  
Sbjct:   691 GDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGEN 750

Query:    74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
               +GP+G +   GP+G     GP+G     GP G   + G +GR    GPSG     GP 
Sbjct:   751 GVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPP 810

Query:   134 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL 193
             G      P+G+    GP G    +G +G +  +GP G     GPSG     GP G     
Sbjct:   811 G------PAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQ 864

Query:   194 GLSDGLRVSGL 204
             GL     + GL
Sbjct:   865 GLLGAPGILGL 875

GO:0046872 "metal ion binding" evidence=IEA

GO:0046332 "SMAD binding" evidence=IEA

GO:0070208 "protein heterotrimerization" evidence=IEA

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA

GO:0005584 "collagen type I" evidence=IDA;IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0001501 "skeletal system development" evidence=IMP

GO:0042476 "odontogenesis" evidence=NAS

GO:0008217 "regulation of blood pressure" evidence=IMP

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IDA

GO:0005201 "extracellular matrix structural constituent" evidence=NAS

GO:0042802 "identical protein binding" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IMP

GO:0030199 "collagen fibril organization" evidence=IMP

GO:0007266 "Rho protein signal transduction" evidence=IDA

GO:0043589 "skin morphogenesis" evidence=IMP

GO:0001568 "blood vessel development" evidence=IMP

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0048407 "platelet-derived growth factor binding" evidence=IDA

GO:0005576 "extracellular region" evidence=TAS

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0030198 "extracellular matrix organization" evidence=TAS

GO:0050900 "leukocyte migration" evidence=TAS

GO:0031012 "extracellular matrix" evidence=IDA

MGI|MGI:88468 Col1a2 "collagen, type I, alpha 2" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 9.5e-15, P = 9.5e-15
 Identities = 61/182 (33%), Positives = 75/182 (41%)

Query:    14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
             G  G     GPSG     G  G    +GP+G   + GP+G+    G  G     GP G  
Sbjct:   697 GDRGEAGAAGPSGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGEKGTKGPKGEN 756

Query:    74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
               +GP+GS+   GPSG     GP G     GP G   + G +GR    GPSG     GP 
Sbjct:   757 GIVGPTGSVGAAGPSGPNGPPGPVGSRGDGGPPGMTGFPGAAGRTGPPGPSGIAGPPGPP 816

Query:   134 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYL 193
             G     G  G     GP GR    G SG   ++G  G     G +G     GP G L   
Sbjct:   817 GAAGKEGIRGPRGDQGPVGRTGETGASGPPGFVGEKGPSGEPGTAGAPGTAGPQGLLGAP 876

Query:   194 GL 195
             G+
Sbjct:   877 GI 878

GO:0001501 "skeletal system development" evidence=ISO

GO:0001568 "blood vessel development" evidence=ISO

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005581 "collagen" evidence=IDA

GO:0005584 "collagen type I" evidence=ISO;IDA

GO:0005615 "extracellular space" evidence=ISO

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=ISO

GO:0007266 "Rho protein signal transduction" evidence=ISO

GO:0008217 "regulation of blood pressure" evidence=ISO

GO:0030199 "collagen fibril organization" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043589 "skin morphogenesis" evidence=ISO

GO:0046332 "SMAD binding" evidence=IPI

GO:0046872 "metal ion binding" evidence=IEA

GO:0048407 "platelet-derived growth factor binding" evidence=ISO

GO:0070062 "extracellular vesicular exosome" evidence=ISO

GO:0070208 "protein heterotrimerization" evidence=IDA

GO:0071230 "cellular response to amino acid stimulus" evidence=IDA

UNIPROTKB|O94913 PCF11 "Pre-mRNA cleavage complex 2 protein Pcf11" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 79/213 (37%), Positives = 102/213 (47%)

Query:    22 LGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGS----LRYLGPSGR-----LRYLGPSGR 72
             +G  G LR+ GP G L   G    LR+ GP G     LR+ GP G+      R+ G  G 
Sbjct:   798 MGGGGPLRFEGPQGQL---GGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPG- 853

Query:    73 LRYLGPSGSLRYLGPSGRLRYLGPSGRLRYLG----PSGRLRYLGPSGRLRYLGPSGRLN 128
             LR+ G  G LR+ GP G+     P G LR+ G    P G LR+ GP G+     P G L 
Sbjct:   854 LRFEGSPGGLRFEGPGGQ-----PVGGLRFEGHRGQPVGGLRFEGPHGQ-----PVGGLR 903

Query:   129 SDGPSGRLRYLGPSGRLRYLG---PSGR-LRYLGPSGRLRYLGPSGRLRYLGP---SG-R 180
              D P G+     P G LR+ G   PSG  +R+ GP G+     P G +R+ GP    G  
Sbjct:   904 FDNPRGQ-----PVGGLRFEGGHGPSGAAIRFDGPHGQ-----PGGGIRFEGPLLQQGVG 953

Query:   181 LRYLGPSGR----LRYLG----LSDGLRVSGLH 205
             +R+ GP G+    LR+ G    L   LR  G H
Sbjct:   954 MRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPH 986

GO:0005849 "mRNA cleavage factor complex" evidence=NAS

GO:0006379 "mRNA cleavage" evidence=NAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006369 "termination of RNA polymerase II transcription" evidence=TAS

GO:0006397 "mRNA processing" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0031124 "mRNA 3'-end processing" evidence=TAS

ZFIN|ZDB-GENE-030131-8415 col1a2 "collagen, type I, alpha 2" [Danio rerio (taxid:7955)]

 Score = 200 (75.5 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 60/175 (34%), Positives = 77/175 (44%)

Query:    14 GPSGRLRYLGPSGSLRYLGPSGSLRYLGPSGRLRYLGPSGSLRYLGPSGRLRYLGPSGRL 73
             G  G     GP G     G  G     GP+G   + GP G+    GP G     GP+G  
Sbjct:   681 GDKGETGSFGPPGPAGPRGAPGERGESGPAGPSGFAGPPGADGQTGPRGEK---GPAGGK 737

Query:    74 RYLGPSGSLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLNSDGPS 133
                GP+G     GP+G    LGPSG +   GP G     GP+G   + G  GR+   GP+
Sbjct:   738 GDAGPAGPA---GPAGNTGPLGPSGPV---GPPGARGDSGPTGLTGFPGAPGRVGPPGPA 791

Query:   134 GRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSGRLRYLGPSG 188
             G    +GP+G     GP+G+    GP G +   GP G    +GP G     GP G
Sbjct:   792 G---IVGPAG---LTGPAGKDGPRGPRGDVGPAGPPGENGMIGPLGLAGEKGPPG 840

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005581 "collagen" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF11259	61	DUF3060: Protein of unknown function (DUF3060); In	93.05
PF11259	61	DUF3060: Protein of unknown function (DUF3060); In	91.42

>PF11259 DUF3060: Protein of unknown function (DUF3060); InterPro: IPR021417 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed

Probab=93.05  E-value=0.18  Score=36.13  Aligned_cols=49  Identities=12%  Similarity=0.279  Sum_probs=19.4

Q ss_pred             CCCeeEeeCCCCceEEeCCCCcccCCCCCCceEEecCCCceEeecCCCce
Q psy5765         105 PSGRLRYLGPSGRLRYLGPSGRLNSDGPSGRLRYLGPSGRLRYLGPSGRL  154 (205)
Q Consensus       105 ~s~~v~~~Gps~~v~~~Gps~~i~~~G~S~~l~~~G~s~~l~~~G~s~~l  154 (205)
                      ..++|++.|.-.+|+..|..+++..+-.. +|+..|.++++.|+.-+..|
T Consensus         5 ~~N~vt~~G~c~~vtV~G~~n~V~~~~v~-~i~v~G~~N~V~~~~G~P~v   53 (61)
T PF11259_consen    5 SGNTVTVTGDCGSVTVSGSDNTVTVDSVD-NISVSGSDNTVTYKSGDPKV   53 (61)
T ss_pred             cCCEEEEEeEEeEEEEEcccCEEEEeeee-EEEEEecCCEEEecCCCceE
Confidence            33333333333334444433333333222 24444444444444333333

>PF11259 DUF3060: Protein of unknown function (DUF3060); InterPro: IPR021417 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed

Probab=91.42  E-value=0.56  Score=33.60  Aligned_cols=24  Identities=13%  Similarity=0.202  Sum_probs=9.0

Q ss_pred             CceEEecCCCceEeecCCCceeee
Q psy5765         134 GRLRYLGPSGRLRYLGPSGRLRYL  157 (205)
Q Consensus       134 ~~l~~~G~s~~l~~~G~s~~l~~~  157 (205)
                      ++|..+|.-..|.-.|.+++|.+.
T Consensus         7 N~vt~~G~c~~vtV~G~~n~V~~~   30 (61)
T PF11259_consen    7 NTVTVTGDCGSVTVSGSDNTVTVD   30 (61)
T ss_pred             CEEEEEeEEeEEEEEcccCEEEEe
Confidence            333333333333333333333333

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00