Psyllid ID: psy5948

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
MTLESQMNSLNMTSPSLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIYWVPTLHFELWENFNENKSDNDTKLEDISGFSK
ccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHcccccEEEEEccccccccccccHHHHHHHHHHcccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccHHHccccccHHccEEEEcccccHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccEEccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccEEEEccccccccccccccEEEEEEcccccccccccccEEEEEEEEccccccEEEEEccccccccccEEEEcccccccccccccccHHHHHHHccccEEcccEEEEEcccccccccccccccccccccccccccccEEEcccccc
ccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccEEEEcccccccccEEEEEHHHHHHHHHHcccEEEEEEEHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccEHEccccHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccEEccccHHHHHHHHHHHcccccccccccHHHHHHHEEEEccccccEEEEEcccHccccEEEccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHccEEEEEEEEEEEcccccccEEEEEEccccccEEEEEcccccccHHHccccEEEEEcccccEEEccEEEccEEcEEEEccccccEEEEcEcccccccccEEEEcccccccccccccHHHcHHHHHHccEEEccccEEEEccEEcEEEccEHHHHHHHcccccccccccHHccccccc
mtlesqmnslnmtspslsfdekKQLITRNLQEFLGEDRLNVILKErdlkiywgtattgrphiayfvpmsKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIdvpisklkfvkgtdyqlskeytldvyrlssvitehdaKKAGAEVVKQVEHpllsgllypglqaldEEYLKVdaqfggvdqRKIFTLAEKYlpqlgyakrihfmnpmvpglaggkmssseedskidlldapALVKKKLKKAfcepgnvednGVLSFLKHVVFSllkpgenlvitrdennggnlnfsdYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESkelkdltskayppkkpvvesdiiaphrldiRVGKIvevsrhpdaeaLYVEkidlgeenprTIVSGLVNYVKEGDMANRLVVVLCNlkpakmrgieSAGMVLCASVeeegnkkveplfvppsskagdkIVVEGyetgapdeilnpKKKVWEKLQVDLKTSSEGIAQWQGFNIYWVPTLHFELWENfnenksdndtkledisgfsk
mtlesqmnslnmtspslsfdeKKQLITRNLQeflgedrlnviLKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLEsidvpisklkfvkgtdyqlskeytldvyRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKkfeskelkdltskayppkkpvvesdiiaphrldIRVGKIVEVSRHPDAEALYVekidlgeenprTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVEEEgnkkveplfvppsskagDKIVVEGYEtgapdeilnpkKKVWEKLQVDLKTSSEGIAQWQGFNIYWVPTLHFELWENFnenksdndtkledisgfsk
MTLESQMNSLNMTSPSLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDlldapalvkkklkkaFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIYWVPTLHFELWENFNENKSDNDTKLEDISGFSK
************************LITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPG****************LLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKK*******************VVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASV*********************KIVVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIYWVPTLHFELWENF*******************
*********************KKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDA*************PLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVP****************DLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAK*EL*PADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDIIAPHRLDI***************ALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETG*******P*KKVWEKLQVDLKTSSEGIAQWQGFNIYWVPTLH***************TKLEDISG***
************TSPSLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLA**********SKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIYWVPTLHFELWENFNENKSDNDTKLEDISGFSK
***************SLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLA****SS***DSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIYWVPTLHFELWENFNEN****************
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MTLESQMNSLNMTSPSLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIYWVPTLHFELWENFNENKSDNDTKLEDISGFSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query549 2.2.26 [Sep-21-2011]
Q6TGS6529 Tyrosine--tRNA ligase, cy yes N/A 0.903 0.937 0.715 0.0
Q7ZX51528 Tyrosine--tRNA ligase, cy N/A N/A 0.905 0.941 0.681 0.0
Q6DIJ1528 Tyrosine--tRNA ligase, cy yes N/A 0.905 0.941 0.677 0.0
Q5ZJ08527 Tyrosine--tRNA ligase, cy yes N/A 0.896 0.933 0.706 0.0
Q29465528 Tyrosine--tRNA ligase, cy yes N/A 0.905 0.941 0.692 0.0
Q4KM49528 Tyrosine--tRNA ligase, cy yes N/A 0.901 0.937 0.691 0.0
P54577528 Tyrosine--tRNA ligase, cy yes N/A 0.901 0.937 0.693 0.0
Q91WQ3528 Tyrosine--tRNA ligase, cy yes N/A 0.901 0.937 0.695 0.0
Q5R8T5528 Tyrosine--tRNA ligase, cy yes N/A 0.901 0.937 0.691 0.0
P36421394 Tyrosine--tRNA ligase, cy yes N/A 0.639 0.890 0.560 1e-113
>sp|Q6TGS6|SYYC_DANRE Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2 Back     alignment and function desciption
 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/513 (71%), Positives = 421/513 (82%), Gaps = 17/513 (3%)

Query: 16  SLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFL 75
            LS DEK QLITRNLQE LGE+RL  ILKER+LK+YWGTATTG+PH+AYFVPMSKIADFL
Sbjct: 4   QLSPDEKFQLITRNLQEVLGEERLKEILKERELKVYWGTATTGKPHVAYFVPMSKIADFL 63

Query: 76  RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDY 135
           +AGCEVTILFADLHAYLDNMKAPWELL LR KYYE+ IKAMLESI VP+ KLKFVKGTDY
Sbjct: 64  KAGCEVTILFADLHAYLDNMKAPWELLELRVKYYEQVIKAMLESIGVPLDKLKFVKGTDY 123

Query: 136 QLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF 195
           QLS+EYTLDVYRLSS++TEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF
Sbjct: 124 QLSREYTLDVYRLSSMVTEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF 183

Query: 196 GGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKK 255
           GGVDQRKIFTLAEKYLP LGY KR H MNPMVPGL G KMSSSEE+SKIDLLD    VKK
Sbjct: 184 GGVDQRKIFTLAEKYLPSLGYTKRSHLMNPMVPGLTGSKMSSSEEESKIDLLDKNQDVKK 243

Query: 256 KLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFA 315
           KLKKAFCEPGNVE+NGVLSF+KHV+F L       VI RD   GG+  ++D++ +E+ FA
Sbjct: 244 KLKKAFCEPGNVENNGVLSFVKHVLFPL---HSEFVIKRDPKFGGDKVYTDFEEVEKDFA 300

Query: 316 KQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYP------------PKKPVV 363
            +++HP DLKA+ E  +N+LL+PIRKKFES ELK LTS AYP            PK+   
Sbjct: 301 AEQIHPGDLKASVELALNKLLDPIRKKFESPELKKLTSSAYPEPSKNKGGVKGNPKQ-TT 359

Query: 364 ESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANR 423
           + D + P RLDIRVGK++ V +HPDA++LY+EKID+GEE PRT+VSGLV Y+ E  + +R
Sbjct: 360 DDDEVIPSRLDIRVGKVISVEKHPDADSLYLEKIDVGEEQPRTVVSGLVAYITEEQLQDR 419

Query: 424 LVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAP 483
           LVV+LCNLKP KMRGIES  MVLCAS+E E  +KVEPL  P  S AGD++ VEGYE+G P
Sbjct: 420 LVVLLCNLKPQKMRGIESQAMVLCASIEGE-PRKVEPLDPPEGSAAGDRVYVEGYESGKP 478

Query: 484 DEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNI 516
           D+ L PKKKV+EKLQVDLK S E +AQW+  N+
Sbjct: 479 DDELKPKKKVFEKLQVDLKISGEFVAQWKEQNL 511
Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1
>sp|Q7ZX51|SYYC_XENLA Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1 Back     alignment and function description
>sp|Q6DIJ1|SYYC_XENTR Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJ08|SYYC_CHICK Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2 SV=1 Back     alignment and function description
>sp|Q29465|SYYC_BOVIN Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4 Back     alignment and function description
>sp|Q4KM49|SYYC_RAT Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars PE=2 SV=3 Back     alignment and function description
>sp|P54577|SYYC_HUMAN Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4 Back     alignment and function description
>sp|Q91WQ3|SYYC_MOUSE Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2 SV=3 Back     alignment and function description
>sp|Q5R8T5|SYYC_PONAB Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3 Back     alignment and function description
>sp|P36421|SYYC_YEAST Tyrosine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYS1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query549
193641272527 PREDICTED: tyrosyl-tRNA synthetase, cyto 0.903 0.941 0.744 0.0
91083743521 PREDICTED: similar to tyrosyl-tRNA synth 0.903 0.952 0.722 0.0
195374916528 Aats-tyr [Drosophila virilis] gi|1941534 0.907 0.943 0.719 0.0
195135639528 GI16545 [Drosophila mojavensis] gi|19391 0.903 0.939 0.716 0.0
125977094525 GA18259 [Drosophila pseudoobscura pseudo 0.897 0.939 0.719 0.0
195168165525 GL17993 [Drosophila persimilis] gi|19410 0.897 0.939 0.717 0.0
242024038531 tyrosyl-tRNA synthetase, cytoplasmic, pu 0.896 0.926 0.707 0.0
307181468522 Tyrosyl-tRNA synthetase, cytoplasmic [Ca 0.905 0.952 0.716 0.0
380021891522 PREDICTED: tyrosine--tRNA ligase, cytopl 0.912 0.959 0.710 0.0
21357223525 Tyrosyl-tRNA synthetase [Drosophila mela 0.890 0.931 0.719 0.0
>gi|193641272|ref|XP_001945437.1| PREDICTED: tyrosyl-tRNA synthetase, cytoplasmic [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/504 (74%), Positives = 429/504 (85%), Gaps = 8/504 (1%)

Query: 21  EKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCE 80
           EKK LI RNLQE LGED+L+VILKERDLKIYWGTATTGRPHIAYFVP+SKIAD+L+AGCE
Sbjct: 6   EKKNLILRNLQEVLGEDKLDVILKERDLKIYWGTATTGRPHIAYFVPISKIADYLKAGCE 65

Query: 81  VTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKE 140
           VTILFADLHAYLDNMKAPWELL LR +YYE SIKAML SI V + KLKFV+GT+YQLSKE
Sbjct: 66  VTILFADLHAYLDNMKAPWELLELRVQYYEHSIKAMLSSIGVSLEKLKFVRGTEYQLSKE 125

Query: 141 YTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQ 200
           YT+D+YRLSS I+ HDAKKAGAEVVKQV++PLLSGLLYPGLQALDEEYLKVDAQFGGVDQ
Sbjct: 126 YTMDMYRLSSSISVHDAKKAGAEVVKQVDNPLLSGLLYPGLQALDEEYLKVDAQFGGVDQ 185

Query: 201 RKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKA 260
           RKIFT++EKYLPQLGY KRIH MNPMVPGLAGGKMSSSE DSKIDLLD+PA VKKKLKKA
Sbjct: 186 RKIFTMSEKYLPQLGYEKRIHLMNPMVPGLAGGKMSSSEVDSKIDLLDSPATVKKKLKKA 245

Query: 261 FCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELH 320
           FCEPGN+ +NG+L+F KHV+F L +P E   I+R+E NGG+LNFS Y+ LE  F++Q+LH
Sbjct: 246 FCEPGNIAENGLLAFAKHVIFGLFEPNEKFKISRNEANGGDLNFSAYEDLEICFSEQKLH 305

Query: 321 PADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYP-PKKP-------VVESDIIAPHR 372
           PADLKA+ EFYINRLL+PIR+ F+  EL+ L + AYP P KP         + + I+P R
Sbjct: 306 PADLKASIEFYINRLLDPIRQIFDKPELQKLVANAYPAPVKPKKTEKNNSNQQEEISPSR 365

Query: 373 LDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLK 432
           LDIRVGKIVEVS+HP+A+ALYVEKIDLGEE PRTIVSGLVNYV   +M +RLV+VLCNLK
Sbjct: 366 LDIRVGKIVEVSKHPEADALYVEKIDLGEEQPRTIVSGLVNYVPINEMQDRLVIVLCNLK 425

Query: 433 PAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKK 492
           PAKMRGIES+GMVLCAS+E  G K VEPL     SK GDK+ +E YE G PD+ILNPKKK
Sbjct: 426 PAKMRGIESSGMVLCASIENNGVKSVEPLEPAEGSKPGDKVFIESYEQGEPDKILNPKKK 485

Query: 493 VWEKLQVDLKTSSEGIAQWQGFNI 516
           +WE+LQVDLK S+   AQWQ  N+
Sbjct: 486 IWEQLQVDLKVSNLCEAQWQSNNL 509

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91083743|ref|XP_971153.1| PREDICTED: similar to tyrosyl-tRNA synthetase [Tribolium castaneum] gi|270006799|gb|EFA03247.1| hypothetical protein TcasGA2_TC013181 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195374916|ref|XP_002046249.1| Aats-tyr [Drosophila virilis] gi|194153407|gb|EDW68591.1| Aats-tyr [Drosophila virilis] Back     alignment and taxonomy information
>gi|195135639|ref|XP_002012240.1| GI16545 [Drosophila mojavensis] gi|193918504|gb|EDW17371.1| GI16545 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|125977094|ref|XP_001352580.1| GA18259 [Drosophila pseudoobscura pseudoobscura] gi|54641328|gb|EAL30078.1| GA18259 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195168165|ref|XP_002024902.1| GL17993 [Drosophila persimilis] gi|194108332|gb|EDW30375.1| GL17993 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|242024038|ref|XP_002432437.1| tyrosyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus corporis] gi|212517870|gb|EEB19699.1| tyrosyl-tRNA synthetase, cytoplasmic, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307181468|gb|EFN69060.1| Tyrosyl-tRNA synthetase, cytoplasmic [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380021891|ref|XP_003694790.1| PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Apis florea] Back     alignment and taxonomy information
>gi|21357223|ref|NP_648895.1| Tyrosyl-tRNA synthetase [Drosophila melanogaster] gi|7294108|gb|AAF49462.1| Tyrosyl-tRNA synthetase [Drosophila melanogaster] gi|15291635|gb|AAK93086.1| LD21116p [Drosophila melanogaster] gi|220954646|gb|ACL89866.1| Aats-tyr-PA [synthetic construct] gi|220960052|gb|ACL92562.1| Aats-tyr-PA [synthetic construct] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query549
ZFIN|ZDB-GENE-030425-2529 yars "tyrosyl-tRNA synthetase" 0.903 0.937 0.698 3.1e-186
FB|FBgn0027080525 Aats-tyr "Tyrosyl-tRNA synthet 0.890 0.931 0.693 2.5e-184
UNIPROTKB|E2RHR7564 YARS "Uncharacterized protein" 0.896 0.872 0.687 2.3e-181
UNIPROTKB|F1MHM5528 YARS "Tyrosine--tRNA ligase, c 0.903 0.939 0.680 1.6e-180
UNIPROTKB|I3L5T8528 YARS "Uncharacterized protein" 0.903 0.939 0.678 1.6e-180
UNIPROTKB|Q5ZJ08527 YARS "Tyrosine--tRNA ligase, c 0.894 0.931 0.688 2.1e-180
UNIPROTKB|Q29465528 YARS "Tyrosine--tRNA ligase, c 0.903 0.939 0.674 1.9e-179
UNIPROTKB|F1NJU7526 YARS "Tyrosine--tRNA ligase, c 0.892 0.931 0.686 3.9e-179
MGI|MGI:2147627528 Yars "tyrosyl-tRNA synthetase" 0.896 0.931 0.677 2.1e-178
UNIPROTKB|P54577528 YARS "Tyrosine--tRNA ligase, c 0.896 0.931 0.675 2.7e-178
ZFIN|ZDB-GENE-030425-2 yars "tyrosyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 1806 (640.8 bits), Expect = 3.1e-186, P = 3.1e-186
 Identities = 357/511 (69%), Positives = 410/511 (80%)

Query:    17 LSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLR 76
             LS DEK QLITRNLQE LGE+RL  ILKER+LK+YWGTATTG+PH+AYFVPMSKIADFL+
Sbjct:     5 LSPDEKFQLITRNLQEVLGEERLKEILKERELKVYWGTATTGKPHVAYFVPMSKIADFLK 64

Query:    77 AGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQ 136
             AGCEVTILFADLHAYLDNMKAPWELL LR KYYE+ IKAMLESI VP+ KLKFVKGTDYQ
Sbjct:    65 AGCEVTILFADLHAYLDNMKAPWELLELRVKYYEQVIKAMLESIGVPLDKLKFVKGTDYQ 124

Query:   137 LSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFG 196
             LS+EYTLDVYRLSS++TEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFG
Sbjct:   125 LSREYTLDVYRLSSMVTEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFG 184

Query:   197 GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDXXXXXXXXXXX 256
             GVDQRKIFTLAEKYLP LGY KR H MNPMVPGL G KMSSSEE+SKID           
Sbjct:   185 GVDQRKIFTLAEKYLPSLGYTKRSHLMNPMVPGLTGSKMSSSEEESKIDLLDKNQDVKKK 244

Query:   257 XXXXFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAK 316
                 FCEPGNVE+NGVLSF+KHV+F L       VI RD   GG+  ++D++ +E+ FA 
Sbjct:   245 LKKAFCEPGNVENNGVLSFVKHVLFPL---HSEFVIKRDPKFGGDKVYTDFEEVEKDFAA 301

Query:   317 QELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYP-PKK--------P--VVES 365
             +++HP DLKA+ E  +N+LL+PIRKKFES ELK LTS AYP P K        P    + 
Sbjct:   302 EQIHPGDLKASVELALNKLLDPIRKKFESPELKKLTSSAYPEPSKNKGGVKGNPKQTTDD 361

Query:   366 DIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLV 425
             D + P RLDIRVGK++ V +HPDA++LY+EKID+GEE PRT+VSGLV Y+ E  + +RLV
Sbjct:   362 DEVIPSRLDIRVGKVISVEKHPDADSLYLEKIDVGEEQPRTVVSGLVAYITEEQLQDRLV 421

Query:   426 VVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDE 485
             V+LCNLKP KMRGIES  MVLCAS+E E  +KVEPL  P  S AGD++ VEGYE+G PD+
Sbjct:   422 VLLCNLKPQKMRGIESQAMVLCASIEGEP-RKVEPLDPPEGSAAGDRVYVEGYESGKPDD 480

Query:   486 ILNPKKKVWEKLQVDLKTSSEGIAQWQGFNI 516
              L PKKKV+EKLQVDLK S E +AQW+  N+
Sbjct:   481 ELKPKKKVFEKLQVDLKISGEFVAQWKEQNL 511
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004831 "tyrosine-tRNA ligase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA
GO:0000049 "tRNA binding" evidence=IEA
GO:0016874 "ligase activity" evidence=IEA
GO:0006412 "translation" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
FB|FBgn0027080 Aats-tyr "Tyrosyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHR7 YARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MHM5 YARS "Tyrosine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3L5T8 YARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ08 YARS "Tyrosine--tRNA ligase, cytoplasmic" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q29465 YARS "Tyrosine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJU7 YARS "Tyrosine--tRNA ligase, cytoplasmic" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2147627 Yars "tyrosyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P54577 YARS "Tyrosine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P54577SYYC_HUMAN6, ., 1, ., 1, ., 10.69350.90160.9375yesN/A
Q6TGS6SYYC_DANRE6, ., 1, ., 1, ., 10.71530.90340.9376yesN/A
Q5R8T5SYYC_PONAB6, ., 1, ., 1, ., 10.69150.90160.9375yesN/A
P36421SYYC_YEAST6, ., 1, ., 1, ., 10.56040.63930.8908yesN/A
Q29465SYYC_BOVIN6, ., 1, ., 1, ., 10.69270.90520.9412yesN/A
C3MJP1SYY_SULIL6, ., 1, ., 1, ., 10.32590.60100.9141yesN/A
Q6DIJ1SYYC_XENTR6, ., 1, ., 1, ., 10.67710.90520.9412yesN/A
Q4JCH6SYY_SULAC6, ., 1, ., 1, ., 10.34260.60290.9168yesN/A
Q91WQ3SYYC_MOUSE6, ., 1, ., 1, ., 10.69540.90160.9375yesN/A
Q5ZJ08SYYC_CHICK6, ., 1, ., 1, ., 10.70690.89610.9335yesN/A
C3NMQ6SYY_SULIN6, ., 1, ., 1, ., 10.32590.60100.9141yesN/A
C3N048SYY_SULIA6, ., 1, ., 1, ., 10.32590.60100.9141yesN/A
Q7ZX51SYYC_XENLA6, ., 1, ., 1, ., 10.68100.90520.9412N/AN/A
Q5V4J1SYY_HALMA6, ., 1, ., 1, ., 10.43820.61380.9739yesN/A
P95982SYY_SULSO6, ., 1, ., 1, ., 10.31760.60100.9016yesN/A
Q4KM49SYYC_RAT6, ., 1, ., 1, ., 10.69150.90160.9375yesN/A
C3N8R2SYY_SULIY6, ., 1, ., 1, ., 10.32590.60100.9141yesN/A
O14055SYYC_SCHPO6, ., 1, ., 1, ., 10.56160.62840.8603yesN/A
Q8SRV7SYYC_ENCCU6, ., 1, ., 1, ., 10.53070.61020.9940yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.10.991
3rd Layer6.1.10.976

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
PRK08560329 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid 1e-100
cd00805269 cd00805, TyrRS_core, catalytic core domain of tyro 3e-91
COG0162401 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translatio 3e-68
pfam00579291 pfam00579, tRNA-synt_1b, tRNA synthetases class I 4e-66
PLN02610801 PLN02610, PLN02610, probable methionyl-tRNA synthe 1e-55
TIGR00234377 TIGR00234, tyrS, tyrosyl-tRNA synthetase 6e-51
cd02799105 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-doma 8e-51
PTZ00126383 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provi 5e-47
cd0215399 cd02153, tRNA_bindingDomain, The tRNA binding doma 2e-36
pfam0158895 pfam01588, tRNA_bind, Putative tRNA binding domain 1e-34
COG0073123 COG0073, ARC1, EMAP domain [General function predi 4e-25
PRK12267648 PRK12267, PRK12267, methionyl-tRNA synthetase; Rev 1e-24
cd02798107 cd02798, tRNA_bind_CsaA, tRNA-binding-domain-conta 4e-23
PRK00133673 PRK00133, metG, methionyl-tRNA synthetase; Reviewe 1e-22
cd02800105 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-doma 2e-22
PTZ00348 682 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provi 1e-21
TIGR00399137 TIGR00399, metG_C_term, methionyl-tRNA synthetase 7e-20
PRK10089112 PRK10089, PRK10089, tRNA-binding protein; Provisio 6e-16
cd02796103 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain- 2e-14
TIGR00472 797 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase 2e-12
TIGR00233327 TIGR00233, trpS, tryptophanyl-tRNA synthetase 6e-12
PRK00629 791 PRK00629, pheT, phenylalanyl-tRNA synthetase subun 1e-11
PRK12285368 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; 5e-11
COG0180314 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans 2e-10
cd00806280 cd00806, TrpRS_core, catalytic core domain of tryp 1e-08
TIGR02222107 TIGR02222, chap_CsaA, export-related chaperone pro 4e-08
PTZ00348682 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provi 3e-07
PRK00927333 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; 3e-05
COG2517219 COG2517, COG2517, Predicted RNA-binding protein co 0.003
PLN02486383 PLN02486, PLN02486, aminoacyl-tRNA ligase 0.003
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated Back     alignment and domain information 
 Score =  305 bits (784), Expect = e-100
 Identities = 127/333 (38%), Positives = 199/333 (59%), Gaps = 11/333 (3%)

Query: 20  DEKKQLITRNLQEFLGEDRLNVILKERD-LKIYWGTATTGRPHIAYFVPMSKIADFLRAG 78
           +E+ +LITRN +E + E+ L  +L+ ++  K Y G   +G+ H+ + + M+K+AD  +AG
Sbjct: 2   EERLELITRNTEEVVTEEELRELLESKEEPKAYIGFEPSGKIHLGHLLTMNKLADLQKAG 61

Query: 79  CEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLS 138
            +VT+L AD HAYL++ K   E +    +Y ++  +A+     +   K +FV G+++QL 
Sbjct: 62  FKVTVLLADWHAYLND-KGDLEEIRKVAEYNKKVFEAL----GLDPDKTEFVLGSEFQLD 116

Query: 139 KEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGV 198
           KEY L V +L+   T   A+++   + +++E P +S L+YP +Q  D  YL VD   GG+
Sbjct: 117 KEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQVADIFYLDVDIAVGGM 176

Query: 199 DQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKIDLLDAPALVKKK 256
           DQRKI  LA + LP+LGY K +    P++ GL GG  KMS S+  S I + D+P  +++K
Sbjct: 177 DQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRK 236

Query: 257 LKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAK 316
           +KKA+C PG VE N VL   K+ +F    P    VI R E  GG+L +  Y+ LE+ +A+
Sbjct: 237 IKKAYCPPGEVEGNPVLEIAKYHIFPRYDP---FVIERPEKYGGDLEYESYEELERDYAE 293

Query: 317 QELHPADLKAAAEFYINRLLEPIRKKFESKELK 349
            +LHP DLK A   Y+  +LEP+R+  E     
Sbjct: 294 GKLHPMDLKNAVAEYLIEILEPVREYLEEGPEL 326

Length = 329
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y) Back     alignment and domain information
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|239198 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-domain-containing EMAP2-like proteins Back     alignment and domain information
>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|239066 cd02153, tRNA_bindingDomain, The tRNA binding domain is also known as the Myf domain in literature Back     alignment and domain information
>gnl|CDD|216589 pfam01588, tRNA_bind, Putative tRNA binding domain Back     alignment and domain information
>gnl|CDD|223151 COG0073, ARC1, EMAP domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|239197 cd02798, tRNA_bind_CsaA, tRNA-binding-domain-containing CsaA-like proteins Back     alignment and domain information
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|239199 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins Back     alignment and domain information
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal region/beta chain Back     alignment and domain information
>gnl|CDD|182232 PRK10089, PRK10089, tRNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|239196 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain Back     alignment and domain information
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|131277 TIGR02222, chap_CsaA, export-related chaperone protein CsaA Back     alignment and domain information
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|225315 COG2517, COG2517, Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 549
PRK08560329 tyrosyl-tRNA synthetase; Validated 100.0
KOG2144|consensus360 100.0
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 100.0
PTZ00348 682 tyrosyl-tRNA synthetase; Provisional 100.0
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 100.0
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 100.0
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 100.0
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 100.0
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 100.0
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 100.0
PLN02886389 aminoacyl-tRNA ligase 100.0
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 100.0
PRK05912408 tyrosyl-tRNA synthetase; Validated 100.0
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 100.0
PLN02486383 aminoacyl-tRNA ligase 100.0
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 100.0
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 100.0
PRK13354410 tyrosyl-tRNA synthetase; Provisional 100.0
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 100.0
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 100.0
KOG2713|consensus347 100.0
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 100.0
KOG2241|consensus255 100.0
PTZ00348682 tyrosyl-tRNA synthetase; Provisional 100.0
KOG2623|consensus467 100.0
KOG2145|consensus397 100.0
PLN02610801 probable methionyl-tRNA synthetase 100.0
cd02798107 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA 99.93
TIGR02222107 chap_CsaA export-related chaperone CsaA. This mode 99.93
PRK10089112 tRNA-binding protein; Provisional 99.92
cd02799105 tRNA_bind_EMAP-II_like tRNA-binding-domain-contain 99.92
PF0158895 tRNA_bind: Putative tRNA binding domain; InterPro: 99.91
COG0073123 ARC1 EMAP domain [General function prediction only 99.9
cd0215399 tRNA_bindingDomain The tRNA binding domain is also 99.89
cd02800105 tRNA_bind_EcMetRS_like tRNA-binding-domain-contain 99.89
TIGR00399137 metG_C_term methionyl-tRNA synthetase C-terminal r 99.88
cd02796103 tRNA_bind_bactPheRS tRNA-binding-domain-containing 99.82
PRK12267648 methionyl-tRNA synthetase; Reviewed 99.78
PRK00133673 metG methionyl-tRNA synthetase; Reviewed 99.76
TIGR00472 798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 99.71
PRK00629 791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 99.68
cd00808239 GluRS_core catalytic core domain of discriminating 99.59
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 99.57
cd00674353 LysRS_core_class_I catalytic core domain of class 99.48
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.48
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 99.48
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 99.43
COG1384521 LysS Lysyl-tRNA synthetase (class I) [Translation, 99.38
TIGR00467515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.34
COG2517219 Predicted RNA-binding protein containing a C-termi 99.19
TIGR02306 341 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me 99.06
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 99.0
PRK14895513 gltX glutamyl-tRNA synthetase; Provisional 99.0
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 98.99
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 98.94
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 98.89
PLN02627535 glutamyl-tRNA synthetase 98.89
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 98.89
cd09287240 GluRS_non_core catalytic core domain of non-discri 98.87
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 98.86
PRK12558445 glutamyl-tRNA synthetase; Provisional 98.82
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 98.8
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 98.79
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 98.65
PTZ00402601 glutamyl-tRNA synthetase; Provisional 98.52
PLN03233523 putative glutamate-tRNA ligase; Provisional 98.44
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 98.36
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 98.26
PLN02859788 glutamine-tRNA ligase 98.22
PRK05347554 glutaminyl-tRNA synthetase; Provisional 98.14
TIGR00463560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 98.12
TIGR00440522 glnS glutaminyl-tRNA synthetase. This protein is a 98.1
PLN02907722 glutamate-tRNA ligase 98.08
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 98.0
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 97.91
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 97.9
PTZ00437574 glutaminyl-tRNA synthetase; Provisional 97.87
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 97.79
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 97.61
PRK12418384 cysteinyl-tRNA synthetase; Provisional 97.58
KOG1149|consensus524 97.47
PLN02946557 cysteine-tRNA ligase 97.45
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 97.41
COG0215464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 97.22
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 97.2
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 97.14
PRK14535699 cysS cysteinyl-tRNA synthetase; Provisional 96.94
PRK14534481 cysS cysteinyl-tRNA synthetase; Provisional 96.91
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 96.9
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 96.21
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 95.31
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 94.8
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 94.72
PHA02142 366 putative RNA ligase 94.66
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 93.75
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 93.25
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 93.16
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 92.9
PLN02843974 isoleucyl-tRNA synthetase 92.83
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 92.52
PRK05743912 ileS isoleucyl-tRNA synthetase; Reviewed 92.47
PRK11893511 methionyl-tRNA synthetase; Reviewed 92.43
PRK13208800 valS valyl-tRNA synthetase; Reviewed 91.66
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 91.44
PLN029591084 aminoacyl-tRNA ligase 91.02
COG0060933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 90.92
PRK13804961 ileS isoleucyl-tRNA synthetase; Provisional 90.86
PLN02224616 methionine-tRNA ligase 90.81
KOG0432|consensus995 90.53
PRK06039975 ileS isoleucyl-tRNA synthetase; Reviewed 90.3
TIGR00395938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 90.1
TIGR00422861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 89.95
KOG1147|consensus712 89.47
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 89.4
PRK12300897 leuS leucyl-tRNA synthetase; Reviewed 89.37
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 89.3
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 89.29
KOG1148|consensus764 89.0
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 88.8
PRK05729874 valS valyl-tRNA synthetase; Reviewed 88.61
PTZ00419995 valyl-tRNA synthetase-like protein; Provisional 87.7
PTZ00399651 cysteinyl-tRNA-synthetase; Provisional 87.53
PLN023811066 valyl-tRNA synthetase 87.35
PLN02882 1159 aminoacyl-tRNA ligase 87.16
PRK12267648 methionyl-tRNA synthetase; Reviewed 87.06
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 86.94
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 86.74
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 86.58
PLN02286576 arginine-tRNA ligase 86.35
PLN02660284 pantoate--beta-alanine ligase 85.54
PLN02943958 aminoacyl-tRNA ligase 85.4
PRK12268556 methionyl-tRNA synthetase; Reviewed 85.3
COG0495814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 85.22
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 85.19
PLN02610 801 probable methionyl-tRNA synthetase 84.89
PLN02224616 methionine-tRNA ligase 84.01
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 83.25
PRK11893511 methionyl-tRNA synthetase; Reviewed 83.12
TIGR00396842 leuS_bact leucyl-tRNA synthetase, eubacterial and 82.08
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 81.83
PLN02563963 aminoacyl-tRNA ligase 81.28
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 81.24
PRK12268556 methionyl-tRNA synthetase; Reviewed 80.99
PRK12451562 arginyl-tRNA synthetase; Reviewed 80.49
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information 
Probab=100.00  E-value=2.2e-68  Score=553.35  Aligned_cols=322  Identities=40%  Similarity=0.654  Sum_probs=289.6

Q ss_pred             HHHHHHHHcccccccCHHHHHHHHh-cCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCCh
Q psy5948          20 DEKKQLITRNLQEFLGEDRLNVILK-ERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAP   98 (549)
Q Consensus        20 ~~~~~li~R~~~ei~~~~~L~~~l~-~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~   98 (549)
                      ++++++|+|++.|++++++|+++++ ++++++|+||+|||.+||||+++++.+++||++|++++|+|||+||+++++.++
T Consensus         2 ~~~~~~~~~~~~e~~~~~el~~~l~~~~~~~v~~G~~PTG~lHLG~~~~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~   81 (329)
T PRK08560          2 EERLELITRNTEEVVTEEELRELLESKEEPKAYIGFEPSGKIHLGHLLTMNKLADLQKAGFKVTVLLADWHAYLNDKGDL   81 (329)
T ss_pred             hHHHHHHHhCceeecCHHHHHHHHhCCCCCEEEEccCCCCcchhhhhHHHHHHHHHHHCCCeEEEEEccchhhcCCCCCH
Confidence            5799999999999999999999998 578899999999999999999999999999999999999999999999873232


Q ss_pred             hHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchh
Q psy5948          99 WELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLY  178 (549)
Q Consensus        99 ~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~Y  178 (549)
                         .+.+.+...  +.+.|+|+|+||++++||+||+|+.+.+||..++.+++.++..++.+......+..++.++|+|+|
T Consensus        82 ---~~i~~~~~~--~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~Y  156 (329)
T PRK08560         82 ---EEIRKVAEY--NKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVY  156 (329)
T ss_pred             ---HHHHHHHHH--HHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccCCCCCHHHHHH
Confidence               334444333  246788999999999999999999888888888889999998887763222112223458999999


Q ss_pred             hHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCC--CccCCCCCCeeeccCCHHHHHHH
Q psy5948         179 PGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKIDLLDAPALVKKK  256 (549)
Q Consensus       179 P~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~--KMSKS~~~s~I~L~Dsp~~i~kK  256 (549)
                      |+|||||++++++|++|||.||++|++++|++++++|+.+|+.+++|+||||+|+  |||||+++|+|||+|+|++|++|
T Consensus       157 P~lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~~K  236 (329)
T PRK08560        157 PLMQVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRK  236 (329)
T ss_pred             HHHHHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999996  99999988899999999999999


Q ss_pred             HHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Q psy5948         257 LKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLL  336 (549)
Q Consensus       257 I~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l  336 (549)
                      |++|+|+|++++.|++++|+++++++.+..   |+++|++.+||+.+++++++++++|.+|+++|++||++|++.|+++|
T Consensus       237 I~kA~t~~~~~~~n~v~~~~~~~~~~~~~~---~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l  313 (329)
T PRK08560        237 IKKAYCPPGEVEGNPVLEIAKYHIFPRYDP---FVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIEIL  313 (329)
T ss_pred             HHhccCCCCCcCCCcHHHHHHHHhhccccc---eEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999886   99999999999999999999999999999999999999999999999


Q ss_pred             Cchhhhhcc-hHHH
Q psy5948         337 EPIRKKFES-KELK  349 (549)
Q Consensus       337 ~pir~~~~~-~e~~  349 (549)
                      +|+|++|++ +|++
T Consensus       314 ~pir~~~~~~~~~~  327 (329)
T PRK08560        314 EPVREYLEEGPELL  327 (329)
T ss_pred             HHHHHHHhCChhhh
Confidence            999999995 4443

>KOG2144|consensus Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02886 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>KOG2713|consensus Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>KOG2241|consensus Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2623|consensus Back     alignment and domain information
>KOG2145|consensus Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins Back     alignment and domain information
>TIGR02222 chap_CsaA export-related chaperone CsaA Back     alignment and domain information
>PRK10089 tRNA-binding protein; Provisional Back     alignment and domain information
>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins Back     alignment and domain information
>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II Back     alignment and domain information
>COG0073 ARC1 EMAP domain [General function prediction only] Back     alignment and domain information
>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature Back     alignment and domain information
>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins Back     alignment and domain information
>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain Back     alignment and domain information
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only] Back     alignment and domain information
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1149|consensus Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PHA02142 putative RNA ligase Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>KOG0432|consensus Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>KOG1147|consensus Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1148|consensus Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>PLN02660 pantoate--beta-alanine ligase Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
1n3l_A372 Crystal Structure Of A Human Aminoacyl-Trna Synthet 1e-139
2dlc_X394 Crystal Structure Of The Ternary Complex Of Yeast T 1e-108
2cyb_A323 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 4e-50
1ntg_A172 Crystal Structure Of The Emap Ii-Like Cytokine Rele 4e-48
1j1u_A306 Crystal Structure Of Archaeal Tyrosyl-Trna Syntheta 8e-43
1zh6_A314 Crystal Structure Of P-Acetylphenylalanine-Trna Syn 2e-40
1zh0_A314 Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Sy 3e-40
3qe4_A312 An Evolved Aminoacyl-Trna Synthetase With Atypical 4e-40
2zp1_A314 Structual Basis Of Iodo-Tyrosine Recognition By Eng 4e-40
2hgz_A306 Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trn 6e-40
2ag6_A314 Crystal Structure Of P-Bromo-L-Phenylalanine-Trna S 6e-40
1u7x_A312 Crystal Structure Of A Mutant M. Jannashii Tyrosyl- 7e-40
3n2y_A314 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 7e-39
3d6u_A314 Crystal Structure Of 4-(Trifluoromethyldiazirinyl) 4e-38
2pxh_A314 Crystal Structure Of A Bipyridylalanyl-Trna Synthet 8e-38
1e7z_A174 Crystal Structure Of The Emap2RNA BINDING DOMAIN OF 1e-37
1fl0_A171 Crystal Structure Of The Emap2RNA-Binding Domain Of 1e-37
1euj_A166 A Novel Anti-Tumor Cytokine Contains A Rna-Binding 1e-37
2cya_A364 Crystal Structure Of Tyrosyl-Trna Synthetase From A 1e-27
3vgj_A373 Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synth 5e-24
2cyc_A375 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 2e-19
1rqg_A722 Methionyl-Trna Synthetase From Pyrococcus Abyssi Le 1e-17
1mkh_A107 C-Terminal Domain Of Methionyl-Trna Synthetase From 2e-17
3p0j_A 690 Leishmania Major Tyrosyl-Trna Synthetase In Complex 3e-17
3p0j_A690 Leishmania Major Tyrosyl-Trna Synthetase In Complex 8e-04
3ers_X118 Crystal Structure Of E. Coli Trbp111 Length = 118 1e-15
3p0h_A 690 Leishmania Major Tyrosyl-Trna Synthetase In Complex 4e-15
3p0h_A690 Leishmania Major Tyrosyl-Trna Synthetase In Complex 8e-04
2j5b_A348 Structure Of The Tyrosyl Trna Synthetase From Acant 3e-11
1pyb_A111 Crystal Structure Of Aquifex Aeolicus Trbp111: A St 5e-09
1h3f_A432 Tyrosyl-Trna Synthetase From Thermus Thermophilus C 1e-05
2cwp_A112 Crystal Structure Of Metrs Related Protein From Pyr 8e-05
2e8g_A241 The Structure Of Protein From P. Horikoshii At 1.7 1e-04
2rhs_B 800 Phers From Staphylococcus Haemolyticus- Rational Pr 2e-04
>pdb|1N3L|A Chain A, Crystal Structure Of A Human Aminoacyl-Trna Synthetase Cytokine Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  493 bits (1268), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/340 (72%), Positives = 277/340 (81%), Gaps = 3/340 (0%)
Query: 18  SFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRA 77
           S +EK  LITRNLQE LGE++L  ILKER+LKIYWGTATTG+PH+AYFVPMSKIADFL+A
Sbjct: 6   SPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLKA 65
Query: 78  GCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQL 137
           GCEVTILFADLHAYLDNMKAPWELL LR  YYE  IKAMLESI VP+ KLKF+KGTDYQL
Sbjct: 66  GCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQL 125
Query: 138 SKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGG 197
           SKEYTLDVYRLSSV+T+HD+KKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGG
Sbjct: 126 SKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGG 185
Query: 198 VDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDXXXXXXXXXXXX 257
           +DQRKIFT AEKYLP LGY+KR+H MNPMVPGL G KMSSSEE+SKID            
Sbjct: 186 IDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKL 245
Query: 258 XXXFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQ 317
              FCEPGNVE+NGVLSF+KHV+F L       VI RDE  GGN  ++ Y  LE+ FA +
Sbjct: 246 KKAFCEPGNVENNGVLSFIKHVLFPL---KSEFVILRDEKWGGNKTYTAYVDLEKDFAAE 302
Query: 318 ELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYP 357
            +HP DLK + E  +N+LL+PIR+KF +  LK L S AYP
Sbjct: 303 VVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYP 342
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast Tyrosyl-Trna Synthetase Length = 394 Back     alignment and structure
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Archaeoglobus Fulgidus Length = 323 Back     alignment and structure
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released From Human Tyrosyl-Trna Synthetase Length = 172 Back     alignment and structure
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase Complexed With Trna(Tyr) And L-Tyrosine Length = 306 Back     alignment and structure
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase In Complex With P-Acetylphenylalanine Length = 314 Back     alignment and structure
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Synthetase In Complex With L-3-(2-Napthyl)alanine Length = 314 Back     alignment and structure
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical Polysubstrate Specificity Length = 312 Back     alignment and structure
>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered Archeal Tyrosyl-Trna Synthetase Length = 314 Back     alignment and structure
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna Synthetase Length = 306 Back     alignment and structure
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna Sythetase In Complex With P-Bromo-L-Phenylalanine Length = 314 Back     alignment and structure
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna Synthetase Specific For O-Methyl-Tyrosine Length = 312 Back     alignment and structure
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With P-(2- Tetrazolyl)-Phenylalanine Length = 314 Back     alignment and structure
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl) Phenylalanyl-Trna Synthetase Length = 314 Back     alignment and structure
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase Length = 314 Back     alignment and structure
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 174 Back     alignment and structure
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 171 Back     alignment and structure
>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif Present In Aminoacyl-Trna Synthetases Length = 166 Back     alignment and structure
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From Aeropyrum Pernix Length = 364 Back     alignment and structure
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase (Pftyrrs)in Complex With Adenylate Analog Length = 373 Back     alignment and structure
>pdb|2CYC|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Pyrococcus Horikoshii Length = 375 Back     alignment and structure
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722 Back     alignment and structure
>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 107 Back     alignment and structure
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With Tyrosinol, Triclinic Crystal Form 1 Length = 690 Back     alignment and structure
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With Tyrosinol, Triclinic Crystal Form 1 Length = 690 Back     alignment and structure
>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111 Length = 118 Back     alignment and structure
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With Fisetin, Cubic Crystal Form Length = 690 Back     alignment and structure
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With Fisetin, Cubic Crystal Form Length = 690 Back     alignment and structure
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba Polyphaga Mimivirus Complexed With Tyrosynol Length = 348 Back     alignment and structure
>pdb|1PYB|A Chain A, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture- Specific Trna Binding Protein Length = 111 Back     alignment and structure
>pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus Complexed With Tyrosinol Length = 432 Back     alignment and structure
>pdb|2CWP|A Chain A, Crystal Structure Of Metrs Related Protein From Pyrococcus Horikoshii Length = 112 Back     alignment and structure
>pdb|2E8G|A Chain A, The Structure Of Protein From P. Horikoshii At 1.7 Angstrom Resolution Length = 241 Back     alignment and structure
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 800 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 1e-154
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 1e-149
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 1e-139
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 1e-132
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 1e-131
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 1e-117
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 1e-114
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 1e-112
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 7e-92
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 1e-112
1ntg_A172 Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas 1e-67
1fl0_A171 Endothelial-monocyte activating polypeptide II; RN 3e-64
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 5e-57
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 9e-37
1pxf_A111 Hypothetical protein YGJH; oligonucleotide-oligosa 9e-37
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 2e-34
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 4e-34
1mkh_A107 Metrs;, C-terminal domain of methionyl-tRNA synthe 1e-33
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 3e-32
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 3e-28
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 5e-27
2cwp_A112 Metrs related protein; structural GEN riken struct 1e-26
1pyb_A111 Methionyl-tRNA synthetase beta subunit; oligonucle 3e-26
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 7e-25
2e8g_A241 Hypothetical protein PH0536; oligonucleotide/oligo 2e-24
1gd7_A109 CSAA protein; oligonucleotide-binding fold, functi 2e-22
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 3e-22
2q2i_A116 AGR_C_4014P, secretion chaperone; beta barrel, OB 2e-21
3g48_A112 Chaperone CSAA; structural genomics, niaid structu 2e-21
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 2e-21
2q2h_A131 AGR_C_4014P, secretion chaperone, phage-display de 7e-21
2nzh_A113 Protein CSAA; beta barrel, oligonucleotide/oligosa 1e-20
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 9e-13
3bu2_A199 Putative tRNA-binding protein; structural genomics 2e-12
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 3e-09
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 4e-09
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 2e-08
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 1e-07
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 3e-07
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 3e-06
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 3e-05
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 5e-04
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 9e-04
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372 Back     alignment and structure
 Score =  445 bits (1146), Expect = e-154
 Identities = 259/375 (69%), Positives = 294/375 (78%), Gaps = 5/375 (1%)

Query: 14  SPSLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIAD 73
             + S +EK  LITRNLQE LGE++L  ILKER+LKIYWGTATTG+PH+AYFVPMSKIAD
Sbjct: 2   GDAPSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIAD 61

Query: 74  FLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGT 133
           FL+AGCEVTILFADLHAYLDNMKAPWELL LR  YYE  IKAMLESI VP+ KLKF+KGT
Sbjct: 62  FLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGT 121

Query: 134 DYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDA 193
           DYQLSKEYTLDVYRLSSV+T+HD+KKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDA
Sbjct: 122 DYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDA 181

Query: 194 QFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALV 253
           QFGG+DQRKIFT AEKYLP LGY+KR+H MNPMVPGL G KMSSSEE+SKIDLLD    V
Sbjct: 182 QFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDV 241

Query: 254 KKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQV 313
           KKKLKKAFCEPGNVE+NGVLSF+KHV+F L       VI RDE  GGN  ++ Y  LE+ 
Sbjct: 242 KKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSE---FVILRDEKWGGNKTYTAYVDLEKD 298

Query: 314 FAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDIIAPHRL 373
           FA + +HP DLK + E  +N+LL+PIR+KF +  LK L S AYP                
Sbjct: 299 FAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAK--GPAK 356

Query: 374 DIRVGKIVEVSRHPD 388
           +    +++    H  
Sbjct: 357 NSEPEEVILEHHHHH 371
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394 Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323 Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364 Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314 Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375 Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348 Back     alignment and structure
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4 Length = 172 Back     alignment and structure
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A Length = 171 Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451 Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406 Back     alignment and structure
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} SCOP: b.40.4.4 PDB: 3ers_X Length = 111 Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393 Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 Back     alignment and structure
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4 Length = 107 Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386 Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Back     alignment and structure
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii} Length = 112 Back     alignment and structure
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4 Length = 111 Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432 Back     alignment and structure
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} Length = 241 Back     alignment and structure
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4 Length = 109 Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395 Back     alignment and structure
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str} Length = 116 Back     alignment and structure
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} Length = 112 Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392 Back     alignment and structure
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str} Length = 131 Back     alignment and structure
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A Length = 113 Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795 Back     alignment and structure
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} Length = 199 Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795 Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Length = 785 Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322 Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337 Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351 Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Length = 432 Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348 Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346 Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query549
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 100.0
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 100.0
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 100.0
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 100.0
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 100.0
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 100.0
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 100.0
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 100.0
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 100.0
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 100.0
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 100.0
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 100.0
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 100.0
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 100.0
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 100.0
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 100.0
2jan_A432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 100.0
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 100.0
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 100.0
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 100.0
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 100.0
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 100.0
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 100.0
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 100.0
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 100.0
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1ntg_A172 Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas 100.0
1fl0_A171 Endothelial-monocyte activating polypeptide II; RN 100.0
3ers_X118 TRNA-binding protein YGJH; oligonucleotide-oligosa 99.96
3g48_A112 Chaperone CSAA; structural genomics, niaid structu 99.96
2cwp_A112 Metrs related protein; structural GEN riken struct 99.96
1gd7_A109 CSAA protein; oligonucleotide-binding fold, functi 99.96
2nzh_A113 Protein CSAA; beta barrel, oligonucleotide/oligosa 99.95
2q2i_A116 AGR_C_4014P, secretion chaperone; beta barrel, OB 99.95
1pyb_A111 Methionyl-tRNA synthetase beta subunit; oligonucle 99.95
1mkh_A107 Metrs;, C-terminal domain of methionyl-tRNA synthe 99.95
2q2h_A131 AGR_C_4014P, secretion chaperone, phage-display de 99.95
1pxf_A111 Hypothetical protein YGJH; oligonucleotide-oligosa 99.95
3bu2_A199 Putative tRNA-binding protein; structural genomics 99.9
2e8g_A241 Hypothetical protein PH0536; oligonucleotide/oligo 99.89
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 99.82
1rqg_A722 Methionyl-tRNA synthetase; translation, dimerizati 99.81
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 99.76
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 99.73
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 99.12
2cfo_A492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 99.06
2ja2_A498 Glutamyl-tRNA synthetase; non-discriminating gluta 98.98
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 98.98
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 98.96
4g6z_A490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 98.88
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 98.83
4gri_A512 Glutamate--tRNA ligase; structural genomics, seatt 98.82
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 98.68
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 98.61
1irx_A523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 98.44
1qtq_A553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 98.13
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 97.98
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 97.83
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 97.81
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 97.68
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 97.54
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 97.49
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 97.47
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 97.41
3sp1_A501 Cysteinyl-tRNA synthetase; structural genomics, se 97.36
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 97.36
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 97.36
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 97.3
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 97.07
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 96.29
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 93.38
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 92.35
1ffy_A917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 92.24
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 92.22
1gax_A862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 92.19
1wz2_A967 Leucyl-tRNA synthetase; ligase, riken structural g 91.25
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 91.16
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 89.9
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 86.96
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 84.8
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 83.92
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 80.44
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-71  Score=582.98  Aligned_cols=340  Identities=76%  Similarity=1.189  Sum_probs=308.6

Q ss_pred             CCCHHHHHHHHHcccccccCHHHHHHHHhcCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCC
Q psy5948          16 SLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNM   95 (549)
Q Consensus        16 ~~~~~~~~~li~R~~~ei~~~~~L~~~l~~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~   95 (549)
                      .|+++++++|++||+.|++++++|+++|+.++++||+||+|||.||||||++++.+++++++|++++++|||+||+++++
T Consensus         4 ~~~~~~~~~l~~Rg~~e~~~~~~L~~~L~~~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~   83 (372)
T 1n3l_A            4 APSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNM   83 (372)
T ss_dssp             CCCHHHHHHHHHTTCSEEECHHHHHHHHTTSCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTT
T ss_pred             cCCHHHHHHHHHcCCeeecCHHHHHHHHhcCCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCC
Confidence            47899999999999999999999999998888899999999999999999999999999999999999999999999988


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCccc
Q psy5948          96 KAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSG  175 (549)
Q Consensus        96 ~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~  175 (549)
                      .++++..+++.+++++++.+.|+|+|+||+++.||+||+|+.+.+++.+++++++.+|+.++++......+..++.++++
T Consensus        84 ~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~v~~~~~~~~~g~  163 (372)
T 1n3l_A           84 KAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSG  163 (372)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhhhhcccCCCccee
Confidence            88888888888888876667789999999999999999997677888888889999999998764221223335678999


Q ss_pred             chhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccCCHHHHHH
Q psy5948         176 LLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKK  255 (549)
Q Consensus       176 ~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~k  255 (549)
                      |+||+|||+|++++++++||||.||++|++++|++++++++.+|+.+++|+|++++|+|||||.++++|||+|+|+++++
T Consensus       164 ~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gldG~KMSKS~~ns~I~L~d~p~~i~k  243 (372)
T 1n3l_A          164 LLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKK  243 (372)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSCC-------CCSCBTTCCHHHHHH
T ss_pred             eecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHHHcCCCCCEEEecCccCCCCcccccCCCCCCeEeccCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999878999999999999


Q ss_pred             HHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Q psy5948         256 KLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRL  335 (549)
Q Consensus       256 KI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~  335 (549)
                      |||+|+|||+++++|+|.+|++++||++++.   |+++|++++||+.+++++++|+++|.+|+++|++||++||++|+++
T Consensus       244 Ki~~A~td~~~~~d~~v~~~lk~~l~~~~~~---f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~  320 (372)
T 1n3l_A          244 KLKKAFCEPGNVENNGVLSFIKHVLFPLKSE---FVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKL  320 (372)
T ss_dssp             HHHTCCCCTTCCSSCHHHHHHHHTTGGGTTC---EEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCCCCCcccHHHHHHHhhhhhhcc---eeecccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999997   9999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhhcchHHHHHhhhcCCC
Q psy5948         336 LEPIRKKFESKELKDLTSKAYPP  358 (549)
Q Consensus       336 l~pir~~~~~~e~~~~~~~~~~~  358 (549)
                      ++|+|++++.++++++...+||.
T Consensus       321 l~p~r~~~~~~~~~~lf~~~~p~  343 (372)
T 1n3l_A          321 LDPIREKFNTPALKKLASAAYPD  343 (372)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHCC-
T ss_pred             HhHHHHHhcCHHHHHHHhccCCC
Confidence            99999999977888999999995
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4 Back     alignment and structure
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A Back     alignment and structure
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4 Back     alignment and structure
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii} Back     alignment and structure
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4 Back     alignment and structure
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A Back     alignment and structure
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str} Back     alignment and structure
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4 Back     alignment and structure
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4 Back     alignment and structure
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str} Back     alignment and structure
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X Back     alignment and structure
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 549
d1n3la_339 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum 3e-77
d1j1ua_306 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc 3e-44
d1ntga_171 b.40.4.4 (A:) C-terminal domain of metazoan tyrosy 1e-40
d1fl0a_164 b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId 3e-36
d1r6ta2386 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase ( 8e-34
d1h3fa1343 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) 2e-23
d1pxfa_111 b.40.4.4 (A:) Structure-specific tRNA-binding prot 6e-23
d1mkha_107 b.40.4.4 (A:) C-terminal domain of methionyl-tRNA 3e-20
d1pyba_107 b.40.4.4 (A:) Structure-specific tRNA-binding prot 2e-19
d1i6la_326 c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) 8e-19
d1gd7a_109 b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermo 9e-18
d2ts1a_319 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bac 4e-11
d1jila_323 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Sta 1e-10
d1jjcb3113 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT 4e-06
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  245 bits (625), Expect = 3e-77
 Identities = 258/342 (75%), Positives = 289/342 (84%), Gaps = 3/342 (0%)

Query: 16  SLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFL 75
           + S +EK  LITRNLQE LGE++L  ILKER+LKIYWGTATTG+PH+AYFVPMSKIADFL
Sbjct: 1   APSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFL 60

Query: 76  RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDY 135
           +AGCEVTILFADLHAYLDNMKAPWELL LR  YYE  IKAMLESI VP+ KLKF+KGTDY
Sbjct: 61  KAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDY 120

Query: 136 QLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF 195
           QLSKEYTLDVYRLSSV+T+HD+KKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF
Sbjct: 121 QLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF 180

Query: 196 GGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKK 255
           GG+DQRKIFT AEKYLP LGY+KR+H MNPMVPGL G KMSSSEE+SKIDLLD    VKK
Sbjct: 181 GGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKK 240

Query: 256 KLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFA 315
           KLKKAFCEPGNVE+NGVLSF+KHV+F L       VI RDE  GGN  ++ Y  LE+ FA
Sbjct: 241 KLKKAFCEPGNVENNGVLSFIKHVLFPLK---SEFVILRDEKWGGNKTYTAYVDLEKDFA 297

Query: 316 KQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYP 357
            + +HP DLK + E  +N+LL+PIR+KF +  LK L S AYP
Sbjct: 298 AEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYP 339
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306 Back     information, alignment and structure
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Length = 343 Back     information, alignment and structure
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} Length = 111 Back     information, alignment and structure
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 107 Back     information, alignment and structure
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} Length = 107 Back     information, alignment and structure
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Length = 326 Back     information, alignment and structure
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]} Length = 109 Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 319 Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 323 Back     information, alignment and structure
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query549
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 100.0
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 100.0
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 100.0
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 100.0
d1i6la_326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 100.0
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 100.0
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 100.0
d1ntga_171 C-terminal domain of metazoan tyrosyl-tRNA synthet 100.0
d1fl0a_164 EMAP II {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1pyba_107 Structure-specific tRNA-binding protein TRBP111 {A 99.96
d1mkha_107 C-terminal domain of methionyl-tRNA synthetase, Me 99.95
d1pxfa_111 Structure-specific tRNA-binding protein TRBP111 {E 99.95
d1gd7a_109 TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 99.93
d1jjcb3113 Domain B2 of PheRS-beta, PheT {Thermus thermophilu 99.84
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 99.1
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 98.94
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 98.44
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 97.79
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 97.7
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 96.16
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 95.12
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 94.42
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 94.39
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 94.26
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 92.18
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 90.26
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 89.89
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 87.09
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 86.79
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 84.88
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 83.1
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 82.62
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-71  Score=575.08  Aligned_cols=337  Identities=77%  Similarity=1.201  Sum_probs=311.0

Q ss_pred             CHHHHHHHHHcccccccCHHHHHHHHhcCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCC
Q psy5948          18 SFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKA   97 (549)
Q Consensus        18 ~~~~~~~li~R~~~ei~~~~~L~~~l~~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~   97 (549)
                      |++|+++||+|++.|++++++|+++|++++++||+||+|||++|||||++++.++++|++|++++|+|||+||++++++.
T Consensus         3 s~~e~~~li~r~~~ei~~~~eL~~~l~~~~~~vy~G~~PTg~lHlG~~l~~~~l~~~q~~g~~~~~~IaD~~a~~~~~~~   82 (339)
T d1n3la_           3 SPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKA   82 (339)
T ss_dssp             CHHHHHHHHHTTCSEEECHHHHHHHHTTSCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTS
T ss_pred             CHHHHHHHHHcCCceeCCHHHHHHHHccCCCEEEEeeCCCCccHHHHHHHHHHHHHHHHCCCcEEEEecchhhhccCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccch
Q psy5948          98 PWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLL  177 (549)
Q Consensus        98 ~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~  177 (549)
                      +....+.+..++...+.+.+.|+|+||+++.|++||+|+.+.+||+.++++.+.+++.+.........+..++.++|+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~a~g~d~~k~~i~~~sd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~f~  162 (339)
T d1n3la_          83 PWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLL  162 (339)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhccChHHheeeecChHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHhccCCCCcccccc
Confidence            88777777777777777889999999999999999999888899999999999998887766555445555677899999


Q ss_pred             hhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccCCHHHHHHHH
Q psy5948         178 YPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKL  257 (549)
Q Consensus       178 YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kKI  257 (549)
                      ||+|||||++++++|+||||.||++|++++|++++++|..+++.+++|++++++|.|||||+++++|||+|+|++|++||
T Consensus       163 YP~lQaaDil~~~ad~v~~G~DQ~~~i~l~rd~a~r~~~~~~~~l~~pll~~l~g~kmsks~~~~~I~l~D~~~~I~kKI  242 (339)
T d1n3la_         163 YPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKL  242 (339)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSCC-------CCSCBTTCCHHHHHHHH
T ss_pred             ccHHHHHHHHhccCCccccchhHHHHHHHHHHHHhhhccCcceeeeeccccccccccccccchhhcccccCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             HhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Q psy5948         258 KKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLE  337 (549)
Q Consensus       258 ~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~  337 (549)
                      ++|+||+++++.|++.++.++++|+.+..   +.+.+.+++||+.++.++++|+++|.+|+++++|||++|+++|+++|+
T Consensus       243 ~~a~td~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~el~~~y~~g~l~~~dlK~~la~~i~~~l~  319 (339)
T d1n3la_         243 KKAFCEPGNVENNGVLSFIKHVLFPLKSE---FVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLD  319 (339)
T ss_dssp             HTCCCCTTCCSSCHHHHHHHHTTGGGTTC---EEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             hhccCCCCCcccCccccchhhhccchhhc---cccccHHHhcCCCCcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999886   999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhcchHHHHHhhhcCC
Q psy5948         338 PIRKKFESKELKDLTSKAYP  357 (549)
Q Consensus       338 pir~~~~~~e~~~~~~~~~~  357 (549)
                      |||++|+.+|+++++.++||
T Consensus       320 pire~~~~~e~~~l~~~~y~  339 (339)
T d1n3la_         320 PIREKFNTPALKKLASAAYP  339 (339)
T ss_dssp             HHHHHTTSHHHHHHHHHHCC
T ss_pred             HHHHHhCCHHHHHHHhccCC
Confidence            99999999999999999997
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure