Psyllid ID: psy6110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHSHSTTSSYQKPLSPLDIS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHccHHHHHHccccccEEEEcccccccccccEEEcHHHHHHHHHcccccccEEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHcccHHHHEEEccccEEEEcccccccccccEEEcHHHHHHHHHHccccccEEEEEEEEccccccEEEEEEEEEcccccccccccccccccccccccEEcccccccccccccccccccccccccccccccEEccccccEEEcccccccccc
Coil and Loop (DISEMBL)
mvmevtpspqcvgreFVRQYYTLLNqapahlhrfysenslfihggldapnretkqvVGQEQIHEHIQQLnfrdchakirqvpvtqqfptvkqveeslppvtqppsppadptppsppkedewkwneqtpveaprspspppppsnepktyanllkgshshsttssyqkplspldis
Flexible Loop (DISEMBL)
mvmevtpspqcvgREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAprspspppppsnEPKTYANLLKGShshsttssyqkplspldis
Low Complexity Region (SEG)
MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLppvtqppsppadptppsppKEDEWKWNEQTPVEAprspspppppsNEPKTYANLLKGSHSHSTTSSYQKPLSPLDIS
Disordered region (IsUnstruct)
**********CVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF***************************************************************************************
Disordered Region (DISOPRED)
******P***CVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGG*****RETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNE*************************************************
Disordered Region (DISEMBL)
********PQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQ****************************WKWNE******************EPKTYANLLK*********************
Disordered Region (DISPRO)
*****TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTP************************K*S******SSYQ**LS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLLKGSHSHSTTSSYQKPLSPLDIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
P97379	482	Ras GTPase-activating pro	yes	N/A	0.459	0.165	0.604	2e-23
Q5R9L3	482	Ras GTPase-activating pro	yes	N/A	0.459	0.165	0.604	3e-23
Q9UN86	482	Ras GTPase-activating pro	yes	N/A	0.459	0.165	0.604	3e-23
Q32LC7	465	Ras GTPase-activating pro	no	N/A	0.459	0.172	0.604	5e-23
Q13283	466	Ras GTPase-activating pro	no	N/A	0.459	0.171	0.604	6e-23
Q5RB87	466	Ras GTPase-activating pro	no	N/A	0.459	0.171	0.604	6e-23
P97855	465	Ras GTPase-activating pro	no	N/A	0.459	0.172	0.604	1e-22
O94260	434	Putative G3BP-like protei	yes	N/A	0.385	0.154	0.385	1e-07

>sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus GN=G3bp2 PE=1 SV=2

 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)

Query: 1  MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
          MVME  PSP  VGREFVRQYYTLLN+AP +LHRFY  NS ++HGG+DA  +  + V GQ 
Sbjct: 1  MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59

Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
           IH  +  LNF +CH KIR V
Sbjct: 60 DIHHKVLSLNFSECHTKIRHV 80

Probable scaffold protein that may be involved in mRNA transport.
Mus musculus (taxid: 10090)

>sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii GN=G3BP2 PE=2 SV=1

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)

Query: 1  MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
          MVME  PSP  VGREFVRQYYTLLN+AP +LHRFY  NS ++HGG+DA  +  + V GQ 
Sbjct: 1  MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59

Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
           IH  +  LNF +CH KIR V
Sbjct: 60 DIHHKVLSLNFSECHTKIRHV 80

Probable scaffold protein that may be involved in mRNA transport.

Pongo abelii (taxid: 9601)

>sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens GN=G3BP2 PE=1 SV=2

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)

Query: 1  MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
          MVME  PSP  VGREFVRQYYTLLN+AP +LHRFY  NS ++HGG+DA  +  + V GQ 
Sbjct: 1  MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59

Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
           IH  +  LNF +CH KIR V
Sbjct: 60 DIHHKVLSLNFSECHTKIRHV 80

Probable scaffold protein that may be involved in mRNA transport.

Homo sapiens (taxid: 9606)

>sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus GN=G3BP PE=2 SV=1

 Score =  107 bits (266), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)

Query: 1  MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
          MVME  PSP  VGREFVRQYYTLLNQAP  LHRFY +NS ++HGGLD+  +    V GQ+
Sbjct: 1  MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK 59

Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
          +IH  +   NF +CH KIR V
Sbjct: 60 EIHRKVMSQNFTNCHTKIRHV 80

May be a regulated effector of stress granule assembly. Phosphorylation-dependent sequence-specific endoribonuclease in vitro. Cleaves exclusively between cytosine and adenine and cleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-dependent helicase. Unwinds preferentially partial DNA and RNA duplexes having a 17 bp annealed portion and either a hanging 3' tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA, RNA/DNA, and RNA/RNA substrates with comparable efficiency. Acts unidirectionally by moving in the 5' to 3' direction along the bound single-stranded DNA.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)

Query: 1  MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
          MVME  PSP  VGREFVRQYYTLLNQAP  LHRFY +NS ++HGGLD+  +    V GQ+
Sbjct: 1  MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK 59

Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
          +IH  +   NF +CH KIR V
Sbjct: 60 EIHRKVMSQNFTNCHTKIRHV 80

May be a regulated effector of stress granule assembly. Phosphorylation-dependent sequence-specific endoribonuclease in vitro. Cleaves exclusively between cytosine and adenine and cleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-dependent helicase. Unwinds preferentially partial DNA and RNA duplexes having a 17 bp annealed portion and either a hanging 3' tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA, RNA/DNA, and RNA/RNA substrates with comparable efficiency. Acts unidirectionally by moving in the 5' to 3' direction along the bound single-stranded DNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii GN=G3BP1 PE=2 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)

Query: 1  MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
          MVME  PSP  VGREFVRQYYTLLNQAP  LHRFY +NS ++HGGLD+  +    V GQ+
Sbjct: 1  MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK 59

Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
          +IH  +   NF +CH KIR V
Sbjct: 60 EIHRKVMSQNFTNCHTKIRHV 80

May be a regulated effector of stress granule assembly. Phosphorylation-dependent sequence-specific endoribonuclease in vitro. Cleaves exclusively between cytosine and adenine and cleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-dependent helicase. Unwinds preferentially partial DNA and RNA duplexes having a 17 bp annealed portion and either a hanging 3' tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA, RNA/DNA, and RNA/RNA substrates with comparable efficiency. Acts unidirectionally by moving in the 5' to 3' direction along the bound single-stranded DNA.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus GN=G3bp1 PE=1 SV=1

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 57/81 (70%), Gaps = 1/81 (1%)

Query: 1  MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
          MVME  PSP  VGREFVRQYYTLLNQAP  LHRFY +NS + HGGLD+  +    V GQ+
Sbjct: 1  MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQK 59

Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
          +IH  +   NF +CH KIR V
Sbjct: 60 EIHRKVMSQNFTNCHTKIRHV 80

May be a regulated effector of stress granule assembly. Phosphorylation-dependent sequence-specific endoribonuclease in vitro. Cleaves exclusively between cytosine and adenine and cleaves MYC mRNA preferentially at the 3'-UTR. ATP- and magnesium-dependent helicase. Unwinds preferentially partial DNA and RNA duplexes having a 17 bp annealed portion and either a hanging 3' tail or hanging tails at both 5'- and 3'-ends. Unwinds DNA/DNA, RNA/DNA, and RNA/RNA substrates with comparable efficiency. Acts unidirectionally by moving in the 5' to 3' direction along the bound single-stranded DNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 12 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
          +G  FV++YYT LN+ P  LH FY++ S  IHG             GQ++IH  I  L+F
Sbjct: 18 IGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGD---EGESISLCHGQQEIHNKILDLDF 74

Query: 72 RDCHAKIRQV 81
          ++C   I  V
Sbjct: 75 QNCKVLISNV 84


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.130    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,401,915
Number of Sequences: 539616
Number of extensions: 3745495
Number of successful extensions: 56415
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 1551
Number of HSP's that attempted gapping in prelim test: 29497
Number of HSP's gapped (non-prelim): 14456
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)

Probable scaffold protein that may be involved in mRNA transport.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
357602466	465	hypothetical protein KGM_21411 [Danaus p	0.465	0.174	0.795	9e-32
157110308	757	hypothetical protein AaeL_AAEL005528 [Ae	0.591	0.136	0.638	5e-31
170051648	687	rasputin [Culex quinquefasciatus] gi|167	0.591	0.149	0.638	1e-30
312383845	909	hypothetical protein AND_02863 [Anophele	0.591	0.113	0.619	3e-30
405961406	496	Ras GTPase-activating protein-binding pr	0.459	0.161	0.740	1e-28
91076984	544	PREDICTED: similar to rasputin CG9412-PB	0.591	0.189	0.685	3e-27
345494268	628	PREDICTED: LOW QUALITY PROTEIN: ras GTPa	0.459	0.127	0.703	5e-27
443685184	504	hypothetical protein CAPTEDRAFT_179128 [	0.586	0.202	0.609	2e-26
383851131	614	PREDICTED: uncharacterized protein LOC10	0.586	0.166	0.657	4e-26
350396369	621	PREDICTED: hypothetical protein LOC10074	0.586	0.164	0.657	4e-26

>gi|357602466|gb|EHJ63410.1| hypothetical protein KGM_21411 [Danaus plexippus]

 Score =  141 bits (356), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 71/83 (85%), Gaps = 2/83 (2%)

Query: 1  MVMEVTPSP--QCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVG 58
          MVME +PSP  Q VGREFVRQYYTLLN+APAHLHRFY+  S F+HGGLDAPNRET  VVG
Sbjct: 1  MVMEASPSPSPQSVGREFVRQYYTLLNKAPAHLHRFYNNYSSFVHGGLDAPNRETLPVVG 60

Query: 59 QEQIHEHIQQLNFRDCHAKIRQV 81
          Q+QIH  IQQLNFRDCHAKI QV
Sbjct: 61 QKQIHNRIQQLNFRDCHAKISQV 83

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157110308|ref|XP_001651045.1| hypothetical protein AaeL_AAEL005528 [Aedes aegypti] gi|108878769|gb|EAT42994.1| AAEL005528-PA [Aedes aegypti]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 74/105 (70%), Gaps = 2/105 (1%)

Query: 1   MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
           MVME  PSPQ VGREFVRQYYTLLN+AP HLHRFY+ +S F+HGGLD  N+E   V+GQ+
Sbjct: 1   MVMEAQPSPQSVGREFVRQYYTLLNKAPDHLHRFYNNSSSFVHGGLDTKNQEATLVIGQK 60

Query: 61  QIHEHIQQLNFRDCHAKIRQVP--VTQQFPTVKQVEESLPPVTQP 103
           QIH  IQQLNFRDCHAKI QV    T     V QV   L    QP
Sbjct: 61  QIHNKIQQLNFRDCHAKISQVDSQATLGNGVVVQVTGELSNDGQP 105

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170051648|ref|XP_001861860.1| rasputin [Culex quinquefasciatus] gi|167872816|gb|EDS36199.1| rasputin [Culex quinquefasciatus]

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 74/105 (70%), Gaps = 2/105 (1%)

Query: 1   MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
           MVME  PSPQ VGREFVRQYYTLLN+AP HLHRFY+ +S F+HGGLD  N+E   V+GQ+
Sbjct: 1   MVMEAQPSPQSVGREFVRQYYTLLNKAPDHLHRFYNNSSSFVHGGLDTKNQEATLVIGQK 60

Query: 61  QIHEHIQQLNFRDCHAKIRQVP--VTQQFPTVKQVEESLPPVTQP 103
           QIH  IQQLNFRDCHAKI QV    T     V QV   L    QP
Sbjct: 61  QIHSKIQQLNFRDCHAKISQVDSQATLGNGVVVQVTGELSNDGQP 105

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383845|gb|EFR28759.1| hypothetical protein AND_02863 [Anopheles darlingi]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 1   MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
           MVM+  PSPQ VGREFVRQYYTLLN+AP HLHRFY+ +S F+HGGLD+ +++T  V+GQ+
Sbjct: 12  MVMDAQPSPQNVGREFVRQYYTLLNKAPDHLHRFYNNSSSFVHGGLDSKHQDTALVIGQK 71

Query: 61  QIHEHIQQLNFRDCHAKIRQVP--VTQQFPTVKQVEESLPPVTQP 103
           QIH  IQQLNFRDCHAKI QV    T     V QV   L    QP
Sbjct: 72  QIHSKIQQLNFRDCHAKISQVDAQATLGNGVVVQVTGELSNDGQP 116

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405961406|gb|EKC27215.1| Ras GTPase-activating protein-binding protein 2 [Crassostrea gigas]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 66/81 (81%), Gaps = 1/81 (1%)

Query: 1   MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
           MVME TPSPQCVGREFVRQYYTLLN+ P HLHRFYS NS F+HGG++ P  E   VVGQ 
Sbjct: 27  MVME-TPSPQCVGREFVRQYYTLLNEVPLHLHRFYSHNSSFVHGGVEKPGEEQPPVVGQA 85

Query: 61  QIHEHIQQLNFRDCHAKIRQV 81
           +IH+ I  LNFRDCHAKIRQV
Sbjct: 86  EIHKKIMSLNFRDCHAKIRQV 106

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|91076984|ref|XP_975463.1| PREDICTED: similar to rasputin CG9412-PB [Tribolium castaneum] gi|270001993|gb|EEZ98440.1| hypothetical protein TcasGA2_TC000929 [Tribolium castaneum]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 1   MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
           MVME  PSPQ VGREFVRQYYTLLN+APAHLHRFY++NS FIHGGLD PNRET  V+GQ+
Sbjct: 1   MVMEAPPSPQSVGREFVRQYYTLLNKAPAHLHRFYNQNSSFIHGGLDPPNRETSPVIGQK 60

Query: 61  QIHEHIQQLNFRDCHAKIRQVP--VTQQFPTVKQVEESLPPVTQP 103
           QIH+ IQQLNF DCHAKI QV    T     V QV   L    QP
Sbjct: 61  QIHQKIQQLNFHDCHAKITQVDSQATLGSGVVVQVTGELSNAGQP 105

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494268|ref|XP_001605102.2| PREDICTED: LOW QUALITY PROTEIN: ras GTPase-activating protein-binding protein 1-like [Nasonia vitripennis]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 66/81 (81%), Gaps = 1/81 (1%)

Query: 1  MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
          MVME   SPQ VGREFVRQYYTLLN+APAHLHRFY+  S F+HGGL+  NRE+   +GQ+
Sbjct: 1  MVMEAPHSPQSVGREFVRQYYTLLNKAPAHLHRFYNNYSSFVHGGLET-NRESNSAIGQK 59

Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
          QIH+ IQ LNF+DCHAKI QV
Sbjct: 60 QIHQKIQALNFQDCHAKINQV 80

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443685184|gb|ELT88883.1| hypothetical protein CAPTEDRAFT_179128 [Capitella teleta]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 73/105 (69%), Gaps = 3/105 (2%)

Query: 1   MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
           MVME TPSPQCVGREFVRQYYTLL++AP++LHRFYS NS F+HGG++ P  E   V+GQ 
Sbjct: 1   MVME-TPSPQCVGREFVRQYYTLLHEAPSYLHRFYSHNSSFVHGGVEKPGEEHPPVMGQA 59

Query: 61  QIHEHIQQLNFRDCHAKIRQVP--VTQQFPTVKQVEESLPPVTQP 103
            IH+ I  LNF DCHAKIRQV    T     V QV   L    QP
Sbjct: 60  NIHKKILSLNFNDCHAKIRQVDSQATVGSAVVVQVTGELSNNGQP 104

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|383851131|ref|XP_003701093.1| PREDICTED: uncharacterized protein LOC100876463 [Megachile rotundata]

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 81/105 (77%), Gaps = 3/105 (2%)

Query: 1   MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
           MVME +PSPQ VGREFVRQYYTLLNQAPAHLHRFY+++S F+HGGLD+ NRE+   +GQ+
Sbjct: 1   MVMEASPSPQNVGREFVRQYYTLLNQAPAHLHRFYNQHSSFVHGGLDS-NRESTPAIGQK 59

Query: 61  QIHEHIQQLNFRDCHAKIRQVP--VTQQFPTVKQVEESLPPVTQP 103
           QIH+ IQQLNFRDCHAKI QV   +T +   V QV   L    QP
Sbjct: 60  QIHQKIQQLNFRDCHAKISQVDSQLTLENGVVVQVSGELSNAGQP 104

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396369|ref|XP_003484531.1| PREDICTED: hypothetical protein LOC100747231 [Bombus impatiens]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 81/105 (77%), Gaps = 3/105 (2%)

Query: 1   MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
           MVME +PSPQ VGREFVRQYYTLLNQAPAHLHRFY+++S F+HGGLD+ NRE+   +GQ+
Sbjct: 1   MVMEASPSPQNVGREFVRQYYTLLNQAPAHLHRFYNQHSSFVHGGLDS-NRESTPAIGQK 59

Query: 61  QIHEHIQQLNFRDCHAKIRQVP--VTQQFPTVKQVEESLPPVTQP 103
           QIH+ IQQLNFRDCHAKI QV   +T +   V QV   L    QP
Sbjct: 60  QIHQKIQQLNFRDCHAKISQVDSQLTLENGVVVQVSGELSNAGQP 104

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
FB|FBgn0015778	690	rin "rasputin" [Drosophila mel	0.425	0.107	0.670	1.7e-26
UNIPROTKB|Q5ZMN1	472	G3BP1 "Uncharacterized protein	0.459	0.169	0.629	3.4e-23
ZFIN|ZDB-GENE-030131-7452	477	g3bp1 "GTPase activating prote	0.459	0.167	0.629	4.6e-23
UNIPROTKB|D6RAC7	141	G3BP2 "Ras GTPase-activating p	0.459	0.567	0.604	1.3e-22
UNIPROTKB|D6RB17	198	G3BP2 "Ras GTPase-activating p	0.459	0.404	0.604	1.3e-22
UNIPROTKB|D6RBR0	102	G3BP2 "Ras GTPase-activating p	0.459	0.784	0.604	1.3e-22
UNIPROTKB|D6RBW8	116	G3BP2 "Ras GTPase-activating p	0.459	0.689	0.604	1.3e-22
UNIPROTKB|D6RE13	111	G3BP2 "Ras GTPase-activating p	0.459	0.720	0.604	1.3e-22
UNIPROTKB|D6REX8	99	G3BP2 "Ras GTPase-activating p	0.459	0.808	0.604	1.3e-22
UNIPROTKB|D6RGJ4	125	G3BP2 "Ras GTPase-activating p	0.459	0.64	0.604	1.3e-22

FB|FBgn0015778 rin "rasputin" [Drosophila melanogaster (taxid:7227)]

 Score = 274 (101.5 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
 Identities = 57/85 (67%), Positives = 63/85 (74%)

Query:     1 MVMEVT----PSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQV 56
             MVM+ T    PSPQ VGREFVRQYYTLLN+AP HLHRFY+ NS +IHG       E+K V
Sbjct:     1 MVMDATQSQQPSPQSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHG-------ESKLV 53

Query:    57 VGQEQIHEHIQQLNFRDCHAKIRQV 81
             VGQ +IH  IQQLNF DCHAKI QV
Sbjct:    54 VGQREIHNRIQQLNFNDCHAKISQV 78

GO:0017124 "SH3 domain binding" evidence=ISS

GO:0001752 "compound eye photoreceptor fate commitment" evidence=IMP

GO:0007265 "Ras protein signal transduction" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0016318 "ommatidial rotation" evidence=IMP

GO:0003729 "mRNA binding" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

UNIPROTKB|Q5ZMN1 G3BP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 3.4e-23, P = 3.4e-23
 Identities = 51/81 (62%), Positives = 60/81 (74%)

Query:     1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
             MVME  PSP  VGREFVRQYYTLLNQAP +LHRFY +NS ++HGGLD+  +    V GQ 
Sbjct:     1 MVME-KPSPLLVGREFVRQYYTLLNQAPDYLHRFYGKNSSYVHGGLDSNGKPADAVYGQS 59

Query:    61 QIHEHIQQLNFRDCHAKIRQV 81
              IH+ +  LNF+DCH KIR V
Sbjct:    60 DIHKKVLSLNFKDCHTKIRHV 80

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-030131-7452 g3bp1 "GTPase activating protein (SH3 domain) binding protein 1" [Danio rerio (taxid:7955)]

 Score = 271 (100.5 bits), Expect = 4.6e-23, P = 4.6e-23
 Identities = 51/81 (62%), Positives = 61/81 (75%)

Query:     1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
             MVME  PS Q VGREFVRQYYTLLNQAP +LHRFY +NS ++HGGLD   +  + V GQ 
Sbjct:     1 MVME-KPSAQLVGREFVRQYYTLLNQAPDYLHRFYGKNSSYVHGGLDNNGKPAEAVYGQS 59

Query:    61 QIHEHIQQLNFRDCHAKIRQV 81
             +IH+ +  L+FRDCH KIR V
Sbjct:    60 EIHKKVMALSFRDCHTKIRHV 80

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|D6RAC7 G3BP2 "Ras GTPase-activating protein-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/81 (60%), Positives = 58/81 (71%)

Query:     1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
             MVME  PSP  VGREFVRQYYTLLN+AP +LHRFY  NS ++HGG+DA  +  + V GQ 
Sbjct:     1 MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59

Query:    61 QIHEHIQQLNFRDCHAKIRQV 81
              IH  +  LNF +CH KIR V
Sbjct:    60 DIHHKVLSLNFSECHTKIRHV 80

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|D6RB17 G3BP2 "Ras GTPase-activating protein-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/81 (60%), Positives = 58/81 (71%)

Query:     1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
             MVME  PSP  VGREFVRQYYTLLN+AP +LHRFY  NS ++HGG+DA  +  + V GQ 
Sbjct:     1 MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59

Query:    61 QIHEHIQQLNFRDCHAKIRQV 81
              IH  +  LNF +CH KIR V
Sbjct:    60 DIHHKVLSLNFSECHTKIRHV 80

GO:0006810 "transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|D6RBR0 G3BP2 "Ras GTPase-activating protein-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/81 (60%), Positives = 58/81 (71%)

Query:     1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
             MVME  PSP  VGREFVRQYYTLLN+AP +LHRFY  NS ++HGG+DA  +  + V GQ 
Sbjct:     1 MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59

Query:    61 QIHEHIQQLNFRDCHAKIRQV 81
              IH  +  LNF +CH KIR V
Sbjct:    60 DIHHKVLSLNFSECHTKIRHV 80

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|D6RBW8 G3BP2 "Ras GTPase-activating protein-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/81 (60%), Positives = 58/81 (71%)

Query:     1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
             MVME  PSP  VGREFVRQYYTLLN+AP +LHRFY  NS ++HGG+DA  +  + V GQ 
Sbjct:     1 MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59

Query:    61 QIHEHIQQLNFRDCHAKIRQV 81
              IH  +  LNF +CH KIR V
Sbjct:    60 DIHHKVLSLNFSECHTKIRHV 80

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|D6RE13 G3BP2 "Ras GTPase-activating protein-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/81 (60%), Positives = 58/81 (71%)

Query:     1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
             MVME  PSP  VGREFVRQYYTLLN+AP +LHRFY  NS ++HGG+DA  +  + V GQ 
Sbjct:     1 MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59

Query:    61 QIHEHIQQLNFRDCHAKIRQV 81
              IH  +  LNF +CH KIR V
Sbjct:    60 DIHHKVLSLNFSECHTKIRHV 80

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|D6REX8 G3BP2 "Ras GTPase-activating protein-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/81 (60%), Positives = 58/81 (71%)

Query:     1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
             MVME  PSP  VGREFVRQYYTLLN+AP +LHRFY  NS ++HGG+DA  +  + V GQ 
Sbjct:     1 MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59

Query:    61 QIHEHIQQLNFRDCHAKIRQV 81
              IH  +  LNF +CH KIR V
Sbjct:    60 DIHHKVLSLNFSECHTKIRHV 80

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|D6RGJ4 G3BP2 "Ras GTPase-activating protein-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/81 (60%), Positives = 58/81 (71%)

Query:     1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
             MVME  PSP  VGREFVRQYYTLLN+AP +LHRFY  NS ++HGG+DA  +  + V GQ 
Sbjct:     1 MVME-KPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQN 59

Query:    61 QIHEHIQQLNFRDCHAKIRQV 81
              IH  +  LNF +CH KIR V
Sbjct:    60 DIHHKVLSLNFSECHTKIRHV 80

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R9L3	G3BP2_PONAB	No assigned EC number	0.6049	0.4597	0.1659	yes	N/A
P97379	G3BP2_MOUSE	No assigned EC number	0.6049	0.4597	0.1659	yes	N/A
Q9UN86	G3BP2_HUMAN	No assigned EC number	0.6049	0.4597	0.1659	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.3.1	LOW CONFIDENCE prediction!
3rd Layer	5.3.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	174
cd00780	119	cd00780, NTF2, Nuclear transport factor 2 (NTF2) d	6e-22
pfam02136	116	pfam02136, NTF2, Nuclear transport factor 2 (NTF2)	5e-14
cd00531	124	cd00531, NTF2_like, Nuclear transport factor 2 (NT	5e-10
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	2e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	0.003

>gnl|CDD|238403 cd00780, NTF2, Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus

 Score = 85.0 bits (211), Expect = 6e-22
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 8  SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ 67
          S + V + FV+QYY++ +     LHR Y + S+    G        KQV G++ I E + 
Sbjct: 1  SAEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREG-------MKQVTGRDAIVEKLS 53

Query: 68 QLNFRDCHAKIRQV 81
           L F+    KI  V
Sbjct: 54 SLPFQKTKHKITTV 67

This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. Length = 119

>gnl|CDD|216894 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain

 Score = 64.7 bits (158), Expect = 5e-14
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 12 VGREFVRQYYTLLNQ-APAHLHRFYS-ENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL 69
          V   FV++YY  L+   P  L   Y  + S+    G          V G+E I+E    L
Sbjct: 1  VALAFVQRYYAALDAGDPEGLAALYYDDASVEDPPGQS-------PVTGREAINEFFDSL 53

Query: 70 NFRDCHAKIRQV 81
           F      I  V
Sbjct: 54 PFTRIQHLITSV 65

This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins. Length = 116

>gnl|CDD|238296 cd00531, NTF2_like, Nuclear transport factor 2 (NTF2-like) superfamily

 Score = 54.4 bits (131), Expect = 5e-10
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 13 GREFVRQYYTLLNQA-PAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
            +F+ +Y  LL+      L   Y++++ F   G    +       G+E I + +++L F
Sbjct: 1  AEQFLYRYARLLDAGDREWLALLYADDAYFEPPG---GDGLIYPDDGREAIEDRVRRLPF 57

Query: 72 ---RDCH 75
             R  H
Sbjct: 58 GPSRTRH 64

This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea and eukaryotes. Length = 124

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 90  VKQVEESLPPVTQPPSPPADPTP-PSPPKEDEWKWN-EQTPV-EAPRSPSPPPPPSNEPK 146
           + + E++   VT     P    P PSPP ED+ K   E  PV E P++PS PPPP    K
Sbjct: 165 ISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPPPKQSAK 224

Length = 463

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 81  VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
                  P  + V E+  P   PP P A P P +P            PV+     +PP P
Sbjct: 391 AAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESA-PKLTRAAIPVDEKPKYTPPAP 449

Query: 141 PSNEPK 146
           P  E K
Sbjct: 450 PKEEEK 455

Length = 585

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 88   PTVKQVEESL---PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNE 144
            P V +  ES    P   + P  P  P PP P  +       Q P   P  P PP  P+ +
Sbjct: 2889 PAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD 2948

Query: 145  P 145
            P
Sbjct: 2949 P 2949

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 15/67 (22%), Positives = 19/67 (28%), Gaps = 1/67 (1%)

Query: 81  VPVTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPP 140
            P          V  +  P T+P +  A   PP  P  +        P      P P  P
Sbjct: 367 QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRET-ATPPPVPPRPVAPPVPHTP 425

Query: 141 PSNEPKT 147
            S    T
Sbjct: 426 ESAPKLT 432

Length = 585

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 98  PPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSPSPPPPPSNEPKTYANLL 152
           P  +  P+ P     P PPKE+E +  +      P++  P  PPS+  + +A+ L
Sbjct: 202 PSSSAAPAAPKAKPSPPPPKEEEVE--KPASSPEPKASKPSAPPSSGDRIFASPL 254

Length = 539

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG2104|consensus	126		99.93
KOG0116|consensus	419		99.92
cd00780	119	NTF2 Nuclear transport factor 2 (NTF2) domain play	99.92
PF02136	118	NTF2: Nuclear transport factor 2 (NTF2) domain; In	99.79
KOG4353|consensus	139		99.78
PF10429	166	Mtr2: Nuclear pore RNA shuttling protein Mtr2; Int	98.34
cd00531	124	NTF2_like Nuclear transport factor 2 (NTF2-like) s	97.78
KOG3763|consensus	585		96.13
PF13474	121	SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE	96.07
PF15008	262	DUF4518: Domain of unknown function (DUF4518)	95.74
TIGR02246	128	conserved hypothetical protein. This family consis	94.42
PF12680	102	SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8	93.99
TIGR02096	129	conserved hypothetical protein, steroid delta-isom	90.87
cd00781	122	ketosteroid_isomerase ketosteroid isomerase: Many	90.79
PF14534	107	DUF4440: Domain of unknown function (DUF4440); PDB	88.43

>KOG2104|consensus

Probab=99.93  E-value=5.5e-26  Score=175.71  Aligned_cols=90  Identities=24%  Similarity=0.429  Sum_probs=85.0

Q ss_pred             CCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeecccc
Q psy6110           6 TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQ   85 (174)
Q Consensus         6 ~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQp   85 (174)
                      ++.++.||.+||++||.+||.+|.+|..||.+.|+|        ||||++++|.++|.||+.+|||++|++.|+++||||
T Consensus         3 d~~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~S~L--------TfEGqq~qG~~~IveKl~sLpFqkiqh~IttvD~QP   74 (126)
T KOG2104|consen    3 DPVYEAVAKAFVQHYYSLFDNDRSQLGALYIDTSML--------TFEGQQIQGKDAIVEKLTSLPFQKIQHSITTVDSQP   74 (126)
T ss_pred             CccHHHHHHHHHHHHHHHhcCchhHhhhhhccccee--------eEcchhhcchHHHHHHHhcCChhhhhceeeeccccc
Confidence            347799999999999999999999999999999997        569999999999999999999999999999999999


Q ss_pred             CC--CcEEEEEeeecCCCCC
Q psy6110          86 QF--PTVKQVEESLPPVTQP  103 (174)
Q Consensus        86 S~--GILI~VtG~ls~~~~p  103 (174)
                      +.  ||||+|+|+|+.++++
T Consensus        75 t~~g~ilv~V~G~Lk~dEd~   94 (126)
T KOG2104|consen   75 TPDGGILVMVVGQLKLDEDP   94 (126)
T ss_pred             CCCCcEEEEEeeeeeeccCC
Confidence            99  7999999999999664

>KOG0116|consensus

Probab=99.92  E-value=1.2e-25  Score=204.15  Aligned_cols=115  Identities=36%  Similarity=0.596  Sum_probs=101.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeee
Q psy6110           2 VMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQV   81 (174)
Q Consensus         2 ~m~~~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~Si   81 (174)
                      ++. .++++.||++||+|||++|++.|+.||+||.++|.++|+++|   ..+..++|+++|+++|++|+|+.|+++|.++
T Consensus         7 ~~~-~~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~d---g~m~s~t~~~~I~~~i~sld~~~~s~eI~tv   82 (419)
T KOG0116|consen    7 LSP-VPTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLD---GKMVSVTGLEAIHEKIMSLDYEVCSVEISTV   82 (419)
T ss_pred             ccC-CCCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCC---CceEEEecHHHhhhheeecCCCceeEEEEEE
Confidence            344 689999999999999999999999999999999999999876   3567899999999999999999999999999


Q ss_pred             ccccCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCcccc
Q psy6110          82 PVTQQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEW  121 (174)
Q Consensus        82 DaQpS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~  121 (174)
                      |+|.|+  ||+|+|+|.|++++.+ +-+|.|+=-++|-+.+|
T Consensus        83 dsQ~S~~~GvvI~VtG~lt~~~~~-rRkF~QtFfLapq~~~y  123 (419)
T KOG0116|consen   83 DSQASLEKGVVIMVTGYLTNKDGP-RRKFSQTFFLAPQEKGY  123 (419)
T ss_pred             ehhhhccCCeEEEEEEEEEeCCCc-ceEEEEEEEEeecCCce
Confidence            999999  9999999999999997 54555555555555544

>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus

Probab=99.92  E-value=6.3e-25  Score=165.16  Aligned_cols=102  Identities=31%  Similarity=0.439  Sum_probs=92.1

Q ss_pred             CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCc-cccccHHHHHHHHHhCCCCcccEEEeeeccccC
Q psy6110           8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRET-KQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQ   86 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg-~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS   86 (174)
                      ++++||++||++||++|+++|+.|++||.++|.|+|        ++ +.+.|+++|.++|++|+++.++|+|.++|||++
T Consensus         1 ~~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~--------~~~~~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~   72 (119)
T cd00780           1 SAEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSR--------EGMKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPT   72 (119)
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEE--------CCceEecCHHHHHHHHHhCCCcceEEEEEEEeeeEc
Confidence            478999999999999999999999999999999988        44 688999999999999999889999999999999


Q ss_pred             C--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110          87 F--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS  134 (174)
Q Consensus        87 ~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (174)
                      .  +|+|+|+|.++.++                 +.++-|.|+|+|.|..
T Consensus        73 ~~~~ili~V~G~~~~~~-----------------~~~~~F~q~F~L~~~~  105 (119)
T cd00780          73 PSGGVIVMVTGSLKLDE-----------------QPPRKFSQTFVLAPQN  105 (119)
T ss_pred             CCCCEEEEEEEEEEECC-----------------CCceeEeEEEEEEecC
Confidence            8  89999999999876                 4466778888887764

This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.

>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein

Probab=99.79  E-value=6.8e-20  Score=135.32  Aligned_cols=99  Identities=27%  Similarity=0.429  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhcc-ccCCceeecCCCCCCcCcc-ccccHHHHHHHHHhCCCCcccEEEeeecccc--C
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFY-SENSLFIHGGLDAPNRETK-QVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQ--Q   86 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY-~~~S~lv~gg~d~~t~eg~-~~~G~e~I~eki~sL~f~~~k~~I~SiDaQp--S   86 (174)
                      ||+.||++||+.|++ +|+.|++|| .+.|.+.        +.++ .+.|.++|.+++.+|+...++++|.++||||  +
T Consensus         1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~--------~~~~~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~   72 (118)
T PF02136_consen    1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLT--------WNGNRPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPS   72 (118)
T ss_dssp             HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEE--------ETTECEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeec--------CCCchhhhhHHHHHHHHhcCCCcccEEEecccccccccc
Confidence            799999999999999 999999999 5555554        4666 8999999999999999987899999999995  3


Q ss_pred             C--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110          87 F--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS  134 (174)
Q Consensus        87 ~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (174)
                      .  +|+|.|+|.++.++.+..                +.|.|+|+|.|..
T Consensus        73 ~~~~i~i~v~G~~~~~~~~~~----------------~~F~q~FvL~~~~  106 (118)
T PF02136_consen   73 SDGSILITVTGQFKEDDNPNP----------------RRFSQTFVLVPQN  106 (118)
T ss_dssp             CCSEEEEEEEEEEEETTSEEE----------------EEEEEEEEEEEET
T ss_pred             cCCcEEEEEEeEEEecCCCcc----------------cEEEEEEEEEEcC
Confidence            3  799999999999887411                8899999998764

NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....

>KOG4353|consensus

Probab=99.78  E-value=3.2e-19  Score=140.03  Aligned_cols=104  Identities=17%  Similarity=0.243  Sum_probs=87.8

Q ss_pred             CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC
Q psy6110           8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF   87 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~   87 (174)
                      ++...+++||+.||..||++|..|.+||.++|.++|        +|+++.|++.|.+.+..||.  .+|+|..+||||.+
T Consensus        11 s~cr~A~eFv~~YY~smD~rR~~i~rlY~~~atlvW--------NGn~v~g~esls~ff~~LPs--S~~qi~~lD~Qpv~   80 (139)
T KOG4353|consen   11 SACRAAEEFVNVYYSSMDKRRRGIGRLYLDNATLVW--------NGNPVSGTESLSEFFNMLPS--SEFQINDLDCQPVH   80 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHhhccceEEE--------cCCcchhHHHHHHHHHhCCC--ccccccccccccch
Confidence            345689999999999999999999999999999987        88999999999999999994  59999999999876


Q ss_pred             --------CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccc
Q psy6110          88 --------PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWK  122 (174)
Q Consensus        88 --------GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~  122 (174)
                              +|||+|+|.++++|+..+.+ .++.-+-+.++.||
T Consensus        81 dqat~~q~~vLvvvsGtVkFdG~k~r~F-~qt~ll~~e~~~~k  122 (139)
T KOG4353|consen   81 DQATGSQTTVLVVVSGTVKFDGNKQRVF-NQTFLLTAEDPPFK  122 (139)
T ss_pred             hhcccccceEEEEEeeeEEEcCCccccc-cceeEEeecCCccc
Confidence                    79999999999999864433 44444444444444

>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts

Probab=98.34  E-value=4e-07  Score=74.39  Aligned_cols=92  Identities=11%  Similarity=0.100  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHhhc-----cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeecccc
Q psy6110          11 CVGREFVRQYYTLLN-----QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQ   85 (174)
Q Consensus        11 ~VG~~FV~qYYt~L~-----~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQp   85 (174)
                      ++.+.||+.||..||     +-...|..||..+|.++|        +|+++.+..+..+.+.+.+- .++|+++++||+.
T Consensus         5 q~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II~--------Ng~Pi~~~~~F~~~w~~~pv-~TqH~L~s~D~H~   75 (166)
T PF10429_consen    5 QIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKIIW--------NGTPIAQPTAFQQTWQQQPV-QTQHQLTSFDCHV   75 (166)
T ss_dssp             CCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEEE--------TTEEES-HHHHHHHHHCCS---EEEEEEEEEEEE
T ss_pred             hhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEEE--------CCccCCCHHHHHHHHHhCcc-ceeeeeeeeeeeE
Confidence            357899999999999     336788899999999986        88999999999999999984 4699999999999


Q ss_pred             CC---CcEEEEEeeecCCCCCCCCCCCCCC
Q psy6110          86 QF---PTVKQVEESLPPVTQPPSPPADPTP  112 (174)
Q Consensus        86 S~---GILI~VtG~ls~~~~p~~~~~~~~~  112 (174)
                      .+   +++|.|.|.+.+|+. -+.++-.+.
T Consensus        76 IPGsgt~i~N~n~KVRFDEs-Grdk~G~~a  104 (166)
T PF10429_consen   76 IPGSGTFIINVNCKVRFDES-GRDKLGEDA  104 (166)
T ss_dssp             ETTTTEEEEEEEEEEEEB-S-SB-TTS-B-
T ss_pred             eCCCCeEEEeeeEEEEecCC-CCCCCCCce
Confidence            98   499999999999654 355554443

Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.

>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily

Probab=97.78  E-value=3.2e-05  Score=54.07  Aligned_cols=110  Identities=20%  Similarity=0.209  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCC--CcccEEEeeeccccCC---
Q psy6110          14 REFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF--RDCHAKIRQVPVTQQF---   87 (174)
Q Consensus        14 ~~FV~qYYt~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f--~~~k~~I~SiDaQpS~---   87 (174)
                      ++|+.+||..|+ .+++.|..||.+++.+.+++.+   .......|.++|.+.+..+.-  ....|-+..++++...   
T Consensus         2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~---~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~   78 (124)
T cd00531           2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGD---GLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGE   78 (124)
T ss_pred             HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCC---EEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCE
Confidence            579999999999 6799999999999999874311   012456899999999998763  3445667888888765   


Q ss_pred             CcEEEEEeeecCCCC--CCCCCCCCCCCCCCCccccccccc
Q psy6110          88 PTVKQVEESLPPVTQ--PPSPPADPTPPSPPKEDEWKWNEQ  126 (174)
Q Consensus        88 GILI~VtG~ls~~~~--p~~~~~~~~~~~~~~~~~~~~~~~  126 (174)
                      ...+.+.+.+...+.  +..--..........+|+||..+-
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~  119 (124)
T cd00531          79 GVVVSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANR  119 (124)
T ss_pred             EEEEEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEE
Confidence            366677777766553  111112222233344566665443

This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea

>KOG3763|consensus

Probab=96.13  E-value=0.024  Score=54.31  Aligned_cols=116  Identities=17%  Similarity=0.161  Sum_probs=75.2

Q ss_pred             CCHHHHHHHHHHHHHHhhccCc-hhHhhccccCCceeecC----CC------------CCCcC-----------cccccc
Q psy6110           7 PSPQCVGREFVRQYYTLLNQAP-AHLHRFYSENSLFIHGG----LD------------APNRE-----------TKQVVG   58 (174)
Q Consensus         7 ps~~~VG~~FV~qYYt~L~~~p-~~L~rFY~~~S~lv~gg----~d------------~~t~e-----------g~~~~G   58 (174)
                      ....++-.+|+++||..+|+++ ..|-..|.++|.|++.=    .+            +..++           ..-..|
T Consensus       335 ~~l~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g  414 (585)
T KOG3763|consen  335 EELKQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHG  414 (585)
T ss_pred             hHHHHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhcc
Confidence            3455688999999999999874 55566688999998630    00            00011           112458


Q ss_pred             HHHHHHHHHhCCCCcccEEEee--ec--cccCCCcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110          59 QEQIHEHIQQLNFRDCHAKIRQ--VP--VTQQFPTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS  134 (174)
Q Consensus        59 ~e~I~eki~sL~f~~~k~~I~S--iD--aQpS~GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (174)
                      ...|.+.|.+||  .++|...+  +|  .|-..++.+.|.|.+.-. +...         .+..-+.+-|.-||+-+|++
T Consensus       415 ~~~Iv~aLs~LP--kT~Hdl~s~vvDv~~~~~~~l~ftv~G~f~d~-~g~~---------~~s~~~~~~FtRtfvv~P~~  482 (585)
T KOG3763|consen  415 ACDIVVALSALP--KTQHDLDSFVVDVWYQTGNLLGFTVAGVFRDG-EGQN---------SPSNRALLGFTRTFVVTPRE  482 (585)
T ss_pred             chHHHHHHHhCc--cchhhhhhhheeeeecccceEEEEEEEEeecC-CccC---------CcccccccccceEEEEeeCC
Confidence            889999999999  66777665  22  222227888899987543 1111         22222256788888888886

>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B

Probab=96.07  E-value=0.0018  Score=46.44  Aligned_cols=105  Identities=15%  Similarity=0.153  Sum_probs=66.6

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccccCC-Cc
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVTQQF-PT   89 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQpS~-GI   89 (174)
                      ++++++|++.+.+ +.+.|..+|.++..++..      ..+....|.++|.+.+...  .+..+.+++..+..+... .+
T Consensus         2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a   75 (121)
T PF13474_consen    2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGT------GPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSGDVA   75 (121)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEET------TSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEETTEE
T ss_pred             HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcC------CCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECCCEE
Confidence            4688999999885 579999999999998763      3555678999998888641  124666777766666543 34


Q ss_pred             EEEEEeeecC--CCCCCCCCCCCCCCCCCCccccccc
Q psy6110          90 VKQVEESLPP--VTQPPSPPADPTPPSPPKEDEWKWN  124 (174)
Q Consensus        90 LI~VtG~ls~--~~~p~~~~~~~~~~~~~~~~~~~~~  124 (174)
                      ++...+.+..  ++++.....-.+-..+=++++||+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~  112 (121)
T PF13474_consen   76 VVTGEFRLRFRNDGEEIEMRGRATFVFRKEDGGWKIV  112 (121)
T ss_dssp             EEEEEEEEEEECTTCEEEEEEEEEEEEEEETTEEEEE
T ss_pred             EEEEEEEEEEecCCccceeeEEEEEEEEEECCEEEEE
Confidence            4444444432  3333222223344445566777764

>PF15008 DUF4518: Domain of unknown function (DUF4518)

Probab=95.74  E-value=0.054  Score=47.44  Aligned_cols=92  Identities=13%  Similarity=0.126  Sum_probs=61.3

Q ss_pred             CCCHHHHHHHHHHHHHHhhcc--CchhHhhccccCCceee--cCCCCCCcCcccc-ccHHHHHHHHHhCCCCcccEE---
Q psy6110           6 TPSPQCVGREFVRQYYTLLNQ--APAHLHRFYSENSLFIH--GGLDAPNRETKQV-VGQEQIHEHIQQLNFRDCHAK---   77 (174)
Q Consensus         6 ~ps~~~VG~~FV~qYYt~L~~--~p~~L~rFY~~~S~lv~--gg~d~~t~eg~~~-~G~e~I~eki~sL~f~~~k~~---   77 (174)
                      ..+.+.+|++|.++||..||.  +-=..--|+.|-+.-+.  .+.    ...... .|.+.+..+|.+|..+..-+=   
T Consensus       124 ~~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~----~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPN  199 (262)
T PF15008_consen  124 QYPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSE----QNVEEYCEGAEEVSLRLLSLVKEERLFFNPN  199 (262)
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCC----CceeEEecCHHHHHHHHHHHhhcccEEECCC
Confidence            456789999999999999999  44455667776443321  111    122333 899999999999875422211   


Q ss_pred             Eee--eccccCC-C-cEEEEEeeecCCC
Q psy6110          78 IRQ--VPVTQQF-P-TVKQVEESLPPVT  101 (174)
Q Consensus        78 I~S--iDaQpS~-G-ILI~VtG~ls~~~  101 (174)
                      +.+  +.|--+. | |+|.|.|+|=.++
T Consensus       200 l~~~G~k~~~~phGlV~V~v~GTvH~~~  227 (262)
T PF15008_consen  200 LDSDGVKGRISPHGLVLVAVCGTVHRDN  227 (262)
T ss_pred             CCCCCcceEEcCCCcEEEEEeeeEecCC
Confidence            223  4444455 7 9999999997754

>TIGR02246 conserved hypothetical protein

Probab=94.42  E-value=0.41  Score=34.54  Aligned_cols=50  Identities=12%  Similarity=0.226  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      =++.+++|+..+++ +++.|..+|.+++.+..       ..+....|.++|.+.+..+
T Consensus         6 i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~-------~~g~~~~G~~~i~~~~~~~   56 (128)
T TIGR02246         6 IRALVATWEAAWAAGDAEGFADLFTPDGVFVT-------VPGQVWKGREAIAAAHEAF   56 (128)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhCCCceEEC-------CCCCeecCHHHHHHHHHHH
Confidence            46778899999986 79999999999998752       2344789999999988753

This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.

>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A

Probab=93.99  E-value=0.12  Score=35.08  Aligned_cols=57  Identities=19%  Similarity=0.444  Sum_probs=44.3

Q ss_pred             HHHHHHhhccC-chhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeee
Q psy6110          17 VRQYYTLLNQA-PAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQV   81 (174)
Q Consensus        17 V~qYYt~L~~~-p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~Si   81 (174)
                      |++||..+++. .+.|..||.++..+..        .+....|.++|.+.+..+-  +...+++|..+
T Consensus         1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   60 (102)
T PF12680_consen    1 VRRFFEAWNAGDLDAIAALFAPDAVFHD--------PGGTLRGREAIREFFEEFFESFPDIRFEIHDI   60 (102)
T ss_dssp             HHHHHHHHHTTHHHHHHHTEEEEEEEEE--------TTSEEESHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CHHHHHHHHcCCHHHHHHHcCCCEEEEe--------CCCcccCHHHHHHHHHHHHhcCCceEEEEEEE
Confidence            78999999864 7999999999988764        2345899999999888653  44566666665

...

>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related

Probab=90.87  E-value=0.96  Score=32.91  Aligned_cols=77  Identities=10%  Similarity=0.172  Sum_probs=48.3

Q ss_pred             HHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccccC-C-CcE
Q psy6110          16 FVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVTQQ-F-PTV   90 (174)
Q Consensus        16 FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQpS-~-GIL   90 (174)
                      =|++||+.+++ +.+.|..||.++..+...      ..+....|.++|.+.+..+  .+.+.+++|..+=.... . .+.
T Consensus         3 iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~   76 (129)
T TIGR02096         3 LAQHWIEAFNRGDMDAVLALLAEDVLYDDN------QGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRNDEGVRVAAE   76 (129)
T ss_pred             HHHHHHHHHHCCCHHHHHHhcCCCeEEEcC------CCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEecCCcEEEEE
Confidence            36789998886 689999999999876431      1223456799998877643  13466667665433332 1 233


Q ss_pred             EEEEeeec
Q psy6110          91 KQVEESLP   98 (174)
Q Consensus        91 I~VtG~ls   98 (174)
                      ..++|...
T Consensus        77 ~~~~g~~~   84 (129)
T TIGR02096        77 WTVHGTYR   84 (129)
T ss_pred             EEEeeeec
Confidence            44445543

This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.

>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon

Probab=90.79  E-value=1.8  Score=31.35  Aligned_cols=51  Identities=14%  Similarity=0.233  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN   70 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~   70 (174)
                      +..|++||..+++ +.+.|..+|.++..+.+.      .....+.|.++|.+.+..+.
T Consensus         6 ~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p------~~~~~~~G~~~i~~~~~~~~   57 (122)
T cd00781           6 KAAVQRYVEAVNAGDPEGIVALFADDATVEDP------VGSPPRSGRAAIAAFYAQSL   57 (122)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCC------CCCCCccCHHHHHHHHHHHh
Confidence            5679999999986 699999999999998531      12346899999999998764

Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.

>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A

Probab=88.43  E-value=1.5  Score=30.13  Aligned_cols=64  Identities=20%  Similarity=0.263  Sum_probs=43.9

Q ss_pred             HHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccC
Q psy6110          15 EFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQ   86 (174)
Q Consensus        15 ~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS   86 (174)
                      +..++|...+++ +.+.|.++|.++..+++.       .| ...|.+++.+.+..-.......++.....+..
T Consensus         3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~-------~g-~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~   67 (107)
T PF14534_consen    3 ALEEQYEDAFNAGDIDALASLYADDFVFVGP-------GG-TILGKEAILAAFKSGFARFSSIKFEDVEVRVL   67 (107)
T ss_dssp             HHHHHHHHHHHTTHHHHHHTTEEEEEEEEET-------TS-EEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCHHHHHhhhCCCEEEECC-------CC-CEeCHHHHHHHHhhccCCCceEEEEEEEEEEE
Confidence            567888888775 499999999999998863       23 34599999999987433333444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
3q90_A	140	Crystal Structure Of The Ntf2 Domain Of Ras Gtpase-		9e-24
3ujm_A	120	Crystal Structure Of The Ntf2-Like Domain Of The Dr		2e-22

>pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras Gtpase-Activating Protein- Binding Protein 1 Length = 140

Iteration: 1
 Score =  105 bits (263), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 1  MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
          MVME  PSP  VGREFVRQYYTLLNQAP  LHRFY +NS ++HGGLD+  +    V GQ+
Sbjct: 2  MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK 60
Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
          +IH  +   NF +CH KIR V
Sbjct: 61 EIHRKVMSQNFTNCHTKIRHV 81

>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The Drosophila Melanogaster Rasputin Protein Length = 120

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 55/74 (74%), Gaps = 7/74 (9%)
Query: 8  SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ 67
          S   VGREFVRQYYTLLN+AP HLHRFY+ NS +IHG       E+K VVGQ +IH  IQ
Sbjct: 2  SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHG-------ESKLVVGQREIHNRIQ 54
Query: 68 QLNFRDCHAKIRQV 81
          QLNF DCHAKI QV
Sbjct: 55 QLNFNDCHAKISQV 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
3q90_A	140	RAS GTPase-activating protein-binding protein 1; s	1e-28
3ujm_A	120	Rasputin; NTF2-like fold, RAS signaling, signaling	6e-22
1gy7_A	125	Nuclear transport factor 2; protein transport; 1.6	1e-21
1zo2_A	129	NTF2, nuclear transport factor 2; structural genom	1e-21
2qiy_A	154	UBP3-associated protein BRE5; deubiquitylation, ub	2e-21
1gy6_A	127	Nuclear transport factor 2; 1.6A {Rattus norvegicu	2e-21
1jkg_A	140	P15; NTF2-like domain, transport protein; 1.90A {H	4e-18
3nv0_B	154	NTF2-related export protein; NTF2-like domain, bet	7e-14

>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} Length = 140

 Score =  102 bits (256), Expect = 1e-28
 Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)

Query: 1  MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
          MVME  PSP  VGREFVRQYYTLLNQAP  LHRFY +NS ++HGGLD+  +    V GQ+
Sbjct: 2  MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQK 60

Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
          +IH  +   NF +CH KIR V
Sbjct: 61 EIHRKVMSQNFTNCHTKIRHV 81

>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster} Length = 120

 Score = 84.5 bits (209), Expect = 6e-22
 Identities = 50/74 (67%), Positives = 55/74 (74%), Gaps = 7/74 (9%)

Query: 8  SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ 67
          S   VGREFVRQYYTLLN+AP HLHRFY+ NS +IHG       E+K VVGQ +IH  IQ
Sbjct: 2  SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHG-------ESKLVVGQREIHNRIQ 54

Query: 68 QLNFRDCHAKIRQV 81
          QLNF DCHAKI QV
Sbjct: 55 QLNFNDCHAKISQV 68

>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A Length = 125

 Score = 84.1 bits (208), Expect = 1e-21
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 5  VTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHE 64
          ++     + + F + YY   +   + L   Y   S+              Q+ G + I E
Sbjct: 1  MSLDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFET--------SQLQGAKDIVE 52

Query: 65 HIQQLNFRDCHAKIRQV 81
           +  L F+    +I  +
Sbjct: 53 KLVSLPFQKVQHRITTL 69

>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2 Length = 129

 Score = 84.2 bits (208), Expect = 1e-21
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 1  MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQE 60
            + + P    +G++FV+ YY         L   Y   S+              Q  GQ 
Sbjct: 3  QSINLNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED--------TQFQGQA 54

Query: 61 QIHEHIQQLNFRDCHAKIRQV 81
           I      LNF+    +I +V
Sbjct: 55 NIVNKFNSLNFQRVQFEITRV 75

>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A Length = 154

 Score = 84.4 bits (208), Expect = 2e-21
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 4  EVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNR-------ETKQV 56
           +  + Q +   F++ YY  +   P+ L  FY+  +   H    + +         T +V
Sbjct: 6  SMGVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKV 65

Query: 57 VGQEQIHEHIQQLN--FRDCHAKIRQV 81
           G+E I++   + +   R    K+  +
Sbjct: 66 TGRENINKFFSRNDAKVRSLKLKLDTI 92

>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A Length = 127

 Score = 83.4 bits (206), Expect = 2e-21
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 3  MEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQI 62
          M   P  + +G  F++ YY L +     L   Y + S     G        +Q  G+  I
Sbjct: 1  MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEG--------QQFQGKAAI 52

Query: 63 HEHIQQLNFRDCHAKIRQV 81
           E +  L F+     I   
Sbjct: 53 VEKLSSLPFQKIQHSITAQ 71

>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A Length = 140

 Score = 75.4 bits (185), Expect = 4e-18
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 12 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
             EFV  YYT +++    L R Y   +  +  G          V GQE + E  + L  
Sbjct: 16 AAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNA--------VSGQESLSEFFEMLPS 67

Query: 72 R-------DCHAKIRQVPVTQ 85
                  DC     +   +Q
Sbjct: 68 SEFQISVVDCQPVHDEATPSQ 88

>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans} Length = 154

 Score = 64.7 bits (157), Expect = 7e-14
 Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 15/82 (18%)

Query: 12  VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
             ++F+  YY ++++    +   Y++ S  +  G          + G + I E ++ L  
Sbjct: 36  ESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNG--------NPINGYDSICEFMKALPS 87

Query: 72  R-------DCHAKIRQVPVTQQ 86
                   D       V     
Sbjct: 88  TQHDIQSLDAQRLPEGVTGDMS 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
3q90_A	140	RAS GTPase-activating protein-binding protein 1; s	99.97
3ujm_A	120	Rasputin; NTF2-like fold, RAS signaling, signaling	99.96
1gy6_A	127	Nuclear transport factor 2; 1.6A {Rattus norvegicu	99.96
1zo2_A	129	NTF2, nuclear transport factor 2; structural genom	99.95
1gy7_A	125	Nuclear transport factor 2; protein transport; 1.6	99.95
2qiy_A	154	UBP3-associated protein BRE5; deubiquitylation, ub	99.93
1jkg_A	140	P15; NTF2-like domain, transport protein; 1.90A {H	99.92
3nv0_B	154	NTF2-related export protein; NTF2-like domain, bet	99.9
1jkg_B	250	TAP; NTF2-like domain, transport protein; 1.90A {H	99.67
1q40_B	219	MEX67, mRNA export factor MEX67; NTF2-fold, nuclea	99.67
1of5_A	221	MRNA export factor MEX67; nuclear protein, repeat,	99.67
1q42_A	201	MTR2, mRNA transport regulator MTR2; NTF2-fold, nu	99.43
3nv0_A	205	Nuclear RNA export factor 2; NTF2-like domain, bet	99.22
1of5_B	184	MTR2, YKL186C, mRNA transport regulator MTR2; nucl	99.07
3gwr_A	144	Putative calcium/calmodulin-dependent protein KIN	94.52
3dm8_A	143	Uncharacterized protein RPA4348; siras, putative i	93.42
4h3u_A	158	Hypothetical protein; structural genomics, PSI-bio	92.95
3cu3_A	172	Domain of unknown function with A cystatin-like F;	92.75
3dxo_A	121	Uncharacterized snoal-like protein; putative isome	92.27
3gzb_A	154	Putative snoal-like polyketide cyclase; YP_0011826	92.0
2gxf_A	142	Hypothetical protein YYBH; alpha-beta protein., st	91.51
3h51_A	156	Putative calcium/calmodulin dependent protein KIN	91.41
3hx8_A	129	MLR2180 protein, putative ketosteroid isomerase; s	91.1
3h3h_A	122	Uncharacterized snoal-like protein; structural gen	91.09
3er7_A	131	Uncharacterized NTF2-like protein; YP_001812677.1,	89.84
2rcd_A	129	Uncharacterized protein; structural genomics, join	89.46
4i4k_A	143	Uncharacterized protein SGCJ; structural genomics,	88.04
3ehc_A	128	Snoal-like polyketide cyclase; structural genomics	87.84
3k0z_A	159	Putative polyketide cyclase; structural genomics,	87.66
1ohp_A	125	Steroid delta-isomerase; inhibitor; HET: ESR; 1.53	87.35
1nww_A	149	Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {R	86.46
3en8_A	128	Uncharacterized NTF-2 like protein; YP_553245.1, N	86.26
3d9r_A	135	Ketosteroid isomerase-like protein; YP_049581.1, s	86.06
3fh1_A	129	Uncharacterized NTF2-like protein; structural geno	86.06
3f9s_A	146	Putative polyketide cyclase; structural genomics,	85.92
1oh0_A	131	Steroid delta-isomerase; ketosteroid isomerase, KS	85.44
2owp_A	129	Hypothetical protein BXE_B1374; cystatin-like fold	85.32
3mg1_A	323	OCP, orange carotenoid protein; carotenoid binding	85.02
2gey_A	158	ACLR protein; alpha+beta barrel, oxidoreductase; H	84.69
2gex_A	152	SNOL; alpha+beta barrel, oxidoreductase; 2.50A {St	83.6
3bb9_A	148	Putative orphan protein; structural genomics, join	82.98
1sjw_A	144	Nogalonic acid methyl ester cyclase; anthracycline	82.79
3g16_A	156	Uncharacterized protein with cystatin-like fold; Y	82.76
3ff2_A	117	Uncharacterized cystatin fold protein (YP_497570.	82.4
3soy_A	145	NTF2-like superfamily protein; structural genomics	82.35
3ec9_A	140	Uncharacterized NTF2-like protein; structural geno	82.22
2f99_A	153	Aklanonic acid methyl ester cyclase, AKNH; anthrac	82.21
2a15_A	139	Hypothetical protein RV0760C; beta-alpha-barrel, s	81.64
3fgy_A	135	Uncharacterized NTF2-like protein; structural geno	81.37
2bng_A	149	MB2760; epoxide hydrolase, limonene, hydrolase, st	81.36
3jum_A	185	Phenazine biosynthesis protein A/B; chirality, dru	80.66

>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0

Probab=99.97  E-value=8.7e-33  Score=215.11  Aligned_cols=115  Identities=51%  Similarity=0.782  Sum_probs=92.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEee
Q psy6110           1 MVMEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQ   80 (174)
Q Consensus         1 ~~m~~~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~S   80 (174)
                      |||| +|++++||++||+|||++|+++|+.|++||+++|+|+|++.|+++.....+.|+++|.++|++|||++|+|+|.+
T Consensus         2 ~~~~-~p~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~t   80 (140)
T 3q90_A            2 MVME-KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRH   80 (140)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEE
T ss_pred             Cccc-CCCHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEe
Confidence            9999 999999999999999999999999999999999999997654221122378999999999999999999999999


Q ss_pred             eccccCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110          81 VPVTQQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR  133 (174)
Q Consensus        81 iDaQpS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (174)
                      +|||++.  ||||+|+|+|+.+++                 ..|-|.|||+|+|.
T Consensus        81 vD~Qps~~~gilI~V~G~l~~~~~-----------------~~~~F~QtF~L~p~  118 (140)
T 3q90_A           81 VDAHATLNDGVVVQVMGLLSNNNQ-----------------ALRRFMQTFVLAPE  118 (140)
T ss_dssp             EEEEECGGGCEEEEEEEEEECTTC-----------------CCEEEEEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEEEEEecCCC-----------------CccEEEEEEEEeec
Confidence            9999998  899999999998653                 36889999999987

>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}

Probab=99.96  E-value=4.7e-30  Score=194.90  Aligned_cols=103  Identities=57%  Similarity=0.791  Sum_probs=93.6

Q ss_pred             CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC
Q psy6110           8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF   87 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~   87 (174)
                      ||++||++||++||++|+++|+.|++||+++|+++|       ++++.+.|+++|.++|++|||.+|+|+|.++||||+.
T Consensus         2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~-------~~~~~~~G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~   74 (120)
T 3ujm_A            2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIH-------GESKLVVGQREIHNRIQQLNFNDCHAKISQVDAQATL   74 (120)
T ss_dssp             --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEE-------TTCCCEESHHHHHHHHHHHCCCSCEEEEEEEEEEEEG
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEE-------cCCcEecCHHHHHHHHHcCCCcceEEEEecccceEcC
Confidence            688999999999999999999999999999999987       4778999999999999999999999999999999998


Q ss_pred             --CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110          88 --PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS  134 (174)
Q Consensus        88 --GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (174)
                        ||||+|+|+|+.+++                 ..|-|.|||+|+|..
T Consensus        75 ~~gili~V~G~l~~~~~-----------------~~r~F~QtF~L~p~~  106 (120)
T 3ujm_A           75 GNGVVVQVTGELSNDGQ-----------------PMRRFTQTFVLAAQS  106 (120)
T ss_dssp             GGEEEEEEEEEEESTTC-----------------CCEEEEEEEEEEECS
T ss_pred             CCCEEEEEEEEEEeCCC-----------------CCceEEEEEEEEEcC
Confidence              799999999998764                 147899999999863

>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A

Probab=99.96  E-value=2.4e-29  Score=192.60  Aligned_cols=106  Identities=20%  Similarity=0.237  Sum_probs=97.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeec
Q psy6110           3 MEVTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVP   82 (174)
Q Consensus         3 m~~~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiD   82 (174)
                      |+.+|++++||++||++||++|+++|+.|++||+++|+|+|        +|+.+.|+++|.++|++|||++++|+|.++|
T Consensus         1 m~~~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~--------~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~d   72 (127)
T 1gy6_A            1 MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTW--------EGQQFQGKAAIVEKLSSLPFQKIQHSITAQD   72 (127)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHCSCSCEEEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEE--------CCccccCHHHHHHHHHhCCCcceEEEEEEEE
Confidence            66789999999999999999999999999999999999986        6789999999999999999999999999999


Q ss_pred             cccCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110          83 VTQQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR  133 (174)
Q Consensus        83 aQpS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (174)
                      ||++.  ||||+|+|.++.+++                 ..|-|.|||+|+|.
T Consensus        73 ~qp~~~~~ili~V~G~~~~~~~-----------------~~~~F~qtF~L~p~  108 (127)
T 1gy6_A           73 HQPTPDSCIISMVVGQLKADED-----------------PIMGFHQMFLLKNI  108 (127)
T ss_dssp             EEECTTSCEEEEEEEEEEETTS-----------------CCEEEEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEEEEEECCC-----------------CcceEeEEEEEEEe
Confidence            99998  899999999998642                 57889999999985

>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2

Probab=99.95  E-value=1.1e-28  Score=189.59  Aligned_cols=105  Identities=21%  Similarity=0.294  Sum_probs=97.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccc
Q psy6110           5 VTPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVT   84 (174)
Q Consensus         5 ~~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQ   84 (174)
                      .+|++++||++||++||++|+++|+.|++||+++|+|+|        +|+.+.|+++|.++|++|||++++|+|.++|||
T Consensus         7 ~~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~--------~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~q   78 (129)
T 1zo2_A            7 LNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTW--------EDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQ   78 (129)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHHCCSCEEEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEE--------CCceeccHHHHHHHHHhCCCcceEEEEEEEEEE
Confidence            379999999999999999999999999999999999986        678999999999999999999999999999999


Q ss_pred             cCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110          85 QQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS  134 (174)
Q Consensus        85 pS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (174)
                      ++.  ||||+|+|.++.++                 +..|-|.|||+|+|..
T Consensus        79 p~~~~gilI~V~G~~~~~~-----------------~~~~~F~qtF~L~p~~  113 (129)
T 1zo2_A           79 PSPNNGSIVFVTGDVRIDD-----------------GQPLKFSQVFNLMPSG  113 (129)
T ss_dssp             ECTBSSEEEEEEEEEEETT-----------------CCCEEEEEEEEEEECS
T ss_pred             EeCCCcEEEEEEEEEEECC-----------------CCcceEEEEEEEEEcC
Confidence            998  89999999999864                 2578999999999964

>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A

Probab=99.95  E-value=3.2e-28  Score=185.96  Aligned_cols=102  Identities=18%  Similarity=0.275  Sum_probs=94.6

Q ss_pred             CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC
Q psy6110           8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF   87 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~   87 (174)
                      ++++||++||++||++|+++|+.|++||+++|.|+|        +|+.+.|+++|.++|.+|||++++|+|.++||||+.
T Consensus         4 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~--------~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~   75 (125)
T 1gy7_A            4 DFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTF--------ETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPAS   75 (125)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESS
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEEEE--------CCcEecCHHHHHHHHHhCCCcceEEEEEEEEEEEec
Confidence            699999999999999999999999999999999986        678999999999999999999999999999999994


Q ss_pred             ---CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110          88 ---PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR  133 (174)
Q Consensus        88 ---GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (174)
                         ||||+|+|.++.+++                ...|-|.|||+|+|.
T Consensus        76 ~~~gili~V~G~~~~~~~----------------~~~~~F~qtF~L~p~  108 (125)
T 1gy7_A           76 PYGDVLVMITGDLLIDEE----------------QNPQRFSQVFHLIPD  108 (125)
T ss_dssp             TTSCEEEEEEEEEEETTC----------------SSCEEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEEECCC----------------CCCccEeEEEEEEEe
Confidence               899999999998653                257899999999986

>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A

Probab=99.93  E-value=5.2e-27  Score=184.65  Aligned_cols=112  Identities=18%  Similarity=0.197  Sum_probs=98.0

Q ss_pred             CCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCC-------CCcCccccccHHHHHHHHHhC--CCCcccE
Q psy6110           6 TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDA-------PNRETKQVVGQEQIHEHIQQL--NFRDCHA   76 (174)
Q Consensus         6 ~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~-------~t~eg~~~~G~e~I~eki~sL--~f~~~k~   76 (174)
                      .|++++||++||+|||++|+++|+.|++||+++|.|+|....+       +...+..+.|+++|.++|++|  ||++++|
T Consensus         8 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h   87 (154)
T 2qiy_A            8 GVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKL   87 (154)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEE
Confidence            3789999999999999999999999999999999999974211       112378999999999999999  9999999


Q ss_pred             EEeeeccccCC----CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110          77 KIRQVPVTQQF----PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS  134 (174)
Q Consensus        77 ~I~SiDaQpS~----GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (174)
                      +|.++|||++.    ||||+|+|.++.++                 +..|.|.|||+|+|..
T Consensus        88 ~I~s~D~q~~~~~~~~ilI~V~G~~~~~~-----------------~~~r~F~qtFvL~p~~  132 (154)
T 2qiy_A           88 KLDTIDFQYTGHLHKSILIMATGEMFWTG-----------------TPVYKFCQTFILLPSS  132 (154)
T ss_dssp             EEEEEEEEEESGGGCEEEEEEEEEEEETT-----------------CCCEEEEEEEEEEECC
T ss_pred             EEEEEEEEEccCCCCEEEEEEEEEEEECC-----------------CCCceEEEEEEEEEeC
Confidence            99999999985    69999999999753                 2578999999999963

>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A

Probab=99.92  E-value=2.9e-25  Score=172.27  Aligned_cols=100  Identities=19%  Similarity=0.222  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccC-
Q psy6110           8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQ-   86 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS-   86 (174)
                      .+.+||++||++||++|+++|+.|++||+++|+|+|        +|+.+.|+++|.++|.+||++  +|+|.++|||++ 
T Consensus        12 ~a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~--------~g~~~~G~~~I~~~l~~Lp~~--~h~i~s~d~q~~~   81 (140)
T 1jkg_A           12 QACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVW--------NGNAVSGQESLSEFFEMLPSS--EFQISVVDCQPVH   81 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHSCCE--EEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcEEEE--------CCeeecCHHHHHHHHHhCCCc--eeEEEEEEEEEcC
Confidence            567899999999999999999999999999999976        678999999999999999987  699999999998 


Q ss_pred             ------C-CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110          87 ------F-PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS  134 (174)
Q Consensus        87 ------~-GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (174)
                            . ||+|+|+|.++.+++                 ..|-|.|||+|+|..
T Consensus        82 ~~~~~~~~~ilI~V~G~~~~~~~-----------------~~r~F~qtF~L~p~~  119 (140)
T 1jkg_A           82 DEATPSQTTVLVVICGSVKFEGN-----------------KQRDFNQNFILTAQA  119 (140)
T ss_dssp             TTTSTTCCEEEEEEEEEEEETTS-----------------CCEEEEEEEEEEEEC
T ss_pred             CcccCCCCeEEEEEEEEEEECCC-----------------CceeeeEEEEEEecC
Confidence                  2 799999999997654                 578999999999965

>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}

Probab=99.90  E-value=7.1e-25  Score=174.10  Aligned_cols=99  Identities=13%  Similarity=0.170  Sum_probs=90.1

Q ss_pred             CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC
Q psy6110           8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF   87 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~   87 (174)
                      .+.+||++||++||++|+++|+.|++||.++|.|+|        +|+.+.|+++|.++|++||+  ++|+|.++|||++.
T Consensus        32 ~a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~ls~--------~g~~~~G~~~I~~~l~~Lp~--~~h~I~s~D~qp~~  101 (154)
T 3nv0_B           32 ELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVW--------NGNPINGYDSICEFMKALPS--TQHDIQSLDAQRLP  101 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHSCC--EEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEEEE--------CCeecccHHHHHHHHHhCCC--eEEEEEEEEEEEcC
Confidence            456799999999999999999999999999999976        77889999999999999996  79999999999986


Q ss_pred             ---------CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110          88 ---------PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR  133 (174)
Q Consensus        88 ---------GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (174)
                               ||||+|+|.++.++++                 .|.|.|||+|+|.
T Consensus       102 ~~~~~q~~~~ilI~V~G~l~~~~~~-----------------~r~F~QtFvL~p~  139 (154)
T 3nv0_B          102 EGVTGDMSGGMLLNVAGAVTVDGDS-----------------KRAFTQTLLLGVE  139 (154)
T ss_dssp             TTCCGGGTTCEEEEEEEEEEETTSC-----------------CEEEEEEEEEEEE
T ss_pred             ccccCCCCCeEEEEEEEEEEECCCC-----------------ceeEEEEEEEEEe
Confidence                     7999999999987551                 5889999999986

>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A

Probab=99.67  E-value=2.9e-17  Score=138.45  Aligned_cols=111  Identities=14%  Similarity=0.149  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHHHHHHHhhccC-chhHhhccccCCceeecCCCCCC---------------cC-----------ccccccH
Q psy6110           7 PSPQCVGREFVRQYYTLLNQA-PAHLHRFYSENSLFIHGGLDAPN---------------RE-----------TKQVVGQ   59 (174)
Q Consensus         7 ps~~~VG~~FV~qYYt~L~~~-p~~L~rFY~~~S~lv~gg~d~~t---------------~e-----------g~~~~G~   59 (174)
                      ..++.+|++||++||++||++ |..|.++|+++|+|++.. +...               ++           ...+.|.
T Consensus        12 ~~~~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~-~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~   90 (250)
T 1jkg_B           12 ENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSI-PFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTR   90 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEEC-CCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESH
T ss_pred             HHHHHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEe-CCCCCCccccchhhhhhhccchhcccchhhhhhhhccCH
Confidence            456789999999999999998 999999999999999852 1000               00           0367999


Q ss_pred             HHHHHHHHhCCCCcccEEEe--eeccccCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110          60 EQIHEHIQQLNFRDCHAKIR--QVPVTQQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR  133 (174)
Q Consensus        60 e~I~eki~sL~f~~~k~~I~--SiDaQpS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (174)
                      ++|.++|.+||  .++|.+.  ++|+|+..  +|+|+|+|.++.++..             .++..|.|.|||++.|.
T Consensus        91 ~~I~~~l~~LP--~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~-------------~~~~~r~F~rtFvL~p~  153 (250)
T 1jkg_B           91 LNVVAFLNELP--KTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGK-------------SRDSLRAFTRTFIAVPA  153 (250)
T ss_dssp             HHHHHHHTTSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEECSST-------------TTTCEEEEEEEEEEEEC
T ss_pred             HHHHHHHHhCC--CeeEeccceEEeeeecCCCEEEEEEEEEEEECCCC-------------CCCCceeeEEEEEEEEC
Confidence            99999999999  6688888  79999976  7999999999976521             13468899999999885

>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2

Probab=99.67  E-value=6.7e-17  Score=134.87  Aligned_cols=125  Identities=22%  Similarity=0.213  Sum_probs=91.9

Q ss_pred             CCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCC---CCCC-cCc-----------------------------
Q psy6110           7 PSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGL---DAPN-RET-----------------------------   53 (174)
Q Consensus         7 ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~---d~~t-~eg-----------------------------   53 (174)
                      ...+.++.+||++||++||++|..|..||+++|+|++..-   +... .++                             
T Consensus        11 ~~~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~   90 (219)
T 1q40_B           11 EDSRNLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARM   90 (219)
T ss_dssp             --CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHhhccccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhhh
Confidence            4577899999999999999999999999999999998521   0000 001                             


Q ss_pred             -cccccHHHHHHHHHhCCCCcccEEE------eeeccc--cCC-CcEEEEEeeecCCCCCCC--------------CCCC
Q psy6110          54 -KQVVGQEQIHEHIQQLNFRDCHAKI------RQVPVT--QQF-PTVKQVEESLPPVTQPPS--------------PPAD  109 (174)
Q Consensus        54 -~~~~G~e~I~eki~sL~f~~~k~~I------~SiDaQ--pS~-GILI~VtG~ls~~~~p~~--------------~~~~  109 (174)
                       ..+.|.++|.++|.+||  .++|.|      .++|||  |+. ||+|+|.|.+...+.+.-              .+..
T Consensus        91 ~~l~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~  168 (219)
T 1q40_B           91 AKLSIGQEQIYKSFQQLP--KTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYH  168 (219)
T ss_dssp             HTCEEHHHHHHHHHHTSC--EEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSS
T ss_pred             hhhccCHHHHHHHHHHCC--CeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCccccccccccccccccccccc
Confidence             15779999999999999  679999      599999  445 899999999987554321              1111


Q ss_pred             CCCCCCCCccccccccccceecCC
Q psy6110         110 PTPPSPPKEDEWKWNEQTPVEAPR  133 (174)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~  133 (174)
                      -...........|.|.|||+++|.
T Consensus       169 ~~~~~~~~~~~~rsF~RtFvL~P~  192 (219)
T 1q40_B          169 SGPKHKRIPLSKKSFDRTFVVIPG  192 (219)
T ss_dssp             SSSCCCCCCCCCEEEEEEEEEECC
T ss_pred             cccccccccCCccceEEEEEEEEC
Confidence            111111223579999999999996

>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2

Probab=99.67  E-value=2.8e-17  Score=137.34  Aligned_cols=126  Identities=16%  Similarity=0.146  Sum_probs=89.9

Q ss_pred             CCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCC------------CCcC-------------------cc
Q psy6110           6 TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDA------------PNRE-------------------TK   54 (174)
Q Consensus         6 ~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~------------~t~e-------------------g~   54 (174)
                      ....+.++.+||++||++||++|..|..||+++|+|++..-..            ..|.                   ..
T Consensus         7 d~~~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~   86 (221)
T 1of5_A            7 NDALGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQR   86 (221)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC-------------------------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhh
Confidence            4567889999999999999999999999999999998743100            0011                   14


Q ss_pred             ccccHHHHHHHHHhCCCCcccEEE------eeeccccCC---CcEEEEEeeecCCCCCC--------------CCCCCCC
Q psy6110          55 QVVGQEQIHEHIQQLNFRDCHAKI------RQVPVTQQF---PTVKQVEESLPPVTQPP--------------SPPADPT  111 (174)
Q Consensus        55 ~~~G~e~I~eki~sL~f~~~k~~I------~SiDaQpS~---GILI~VtG~ls~~~~p~--------------~~~~~~~  111 (174)
                      .+.|.++|.++|.+||  .++|.|      .++|||+..   ||+|+|.|.+...+.+.              ..+....
T Consensus        87 l~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (221)
T 1of5_A           87 LSIGQESINSIFKTLP--KTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHG  164 (221)
T ss_dssp             -CBHHHHHHHHHHHSC--CEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-------------------------
T ss_pred             hccCHHHHHHHHHhCC--CeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCccccccccccccccccccccccc
Confidence            6789999999999999  669999      599999985   79999999998766541              1122222


Q ss_pred             CCCCC-CccccccccccceecCC
Q psy6110         112 PPSPP-KEDEWKWNEQTPVEAPR  133 (174)
Q Consensus       112 ~~~~~-~~~~~~~~~~~~~~~~~  133 (174)
                      ....| .....|.|.+||+++|.
T Consensus       165 ~~~~~~~~~~~rsF~RTFvL~P~  187 (221)
T 1of5_A          165 YNSTSNNKLSKKSFDRTWVIVPM  187 (221)
T ss_dssp             ----CCSCCEEEEEEEEEEEEEE
T ss_pred             ccccccccCCccceEEEEEEEec
Confidence            21121 13468999999999996

>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A

Probab=99.43  E-value=9.9e-14  Score=114.30  Aligned_cols=98  Identities=9%  Similarity=0.008  Sum_probs=81.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhhccCch-----hHh------hcc----ccCCceeecCCCCCCcCcccc------ccH
Q psy6110           1 MVMEVTPSPQCVGREFVRQYYTLLNQAPA-----HLH------RFY----SENSLFIHGGLDAPNRETKQV------VGQ   59 (174)
Q Consensus         1 ~~m~~~ps~~~VG~~FV~qYYt~L~~~p~-----~L~------rFY----~~~S~lv~gg~d~~t~eg~~~------~G~   59 (174)
                      |+|+  -++...++.|++.||..||+.+.     .|.      ++|    .++|.++|        +|+.+      .|+
T Consensus        19 ~~mn--~~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liw--------NGnp~~~~~~~~gr   88 (201)
T 1q42_A           19 SHMN--QDPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIV--------NGQPIIPSPQEDCK   88 (201)
T ss_dssp             ------CCGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEE--------TTEECCCCSSCCHH
T ss_pred             cccC--CCcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEE--------cCcccccccccccH
Confidence            4565  56778899999999999999887     777      888    78899987        77788      999


Q ss_pred             HHHHHHHHhCCCCcccEEEeeeccccCC---CcEEEEEeeecCCCCCCCCCCCCC
Q psy6110          60 EQIHEHIQQLNFRDCHAKIRQVPVTQQF---PTVKQVEESLPPVTQPPSPPADPT  111 (174)
Q Consensus        60 e~I~eki~sL~f~~~k~~I~SiDaQpS~---GILI~VtG~ls~~~~p~~~~~~~~  111 (174)
                      ++|.+++..||  .++|.|.++|||+.+   .+||.|.|+|+++++. +.++.++
T Consensus        89 ~~fqk~w~~lP--~SqHqL~SlDahpIpGq~T~lI~asGkVrFDesg-r~~fgQs  140 (201)
T 1q42_A           89 LQFQKKWLQTP--LSSHQLTSYDGHLIPGTGTFVVHFSAKVRFDQSG-RNRLGES  140 (201)
T ss_dssp             HHHHHHHHTSC--CEEEEEEEEEEEEETTTTEEEEEEEEEEEEBCSS-CCTTSCC
T ss_pred             HHHHHHHHhCC--CcceeeeeeecceeCCCcEEEEEEeEEEEECCCC-cCcCCCc
Confidence            99999999999  669999999999997   5999999999998876 4444443

>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}

Probab=99.22  E-value=2.3e-11  Score=100.32  Aligned_cols=118  Identities=20%  Similarity=0.222  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHHHHHhhccC-----chhHhhccc-cCCceeec---CC-C------------------C----------
Q psy6110           7 PSPQCVGREFVRQYYTLLNQA-----PAHLHRFYS-ENSLFIHG---GL-D------------------A----------   48 (174)
Q Consensus         7 ps~~~VG~~FV~qYYt~L~~~-----p~~L~rFY~-~~S~lv~g---g~-d------------------~----------   48 (174)
                      .....++..|+++||..+|++     |..|..+|+ ++|.|+-.   .. +                  +          
T Consensus        10 ~~~~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~   89 (205)
T 3nv0_A           10 DEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFA   89 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccH
Confidence            345679999999999999997     999999999 68888621   00 0                  0          


Q ss_pred             CCcCccccccHHHHHHHHHhCCCCcccEEEee--eccccCC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccc
Q psy6110          49 PNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQ--VPVTQQF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWN  124 (174)
Q Consensus        49 ~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~S--iDaQpS~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~  124 (174)
                      .........|.++|.++|.+||  .++|.+.+  +|||+..  +|+|.|+|.++...+...+        .-.++..|.|
T Consensus        90 ~~r~~~L~~G~~~I~~~L~~LP--~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~--------~~~~~~~r~F  159 (205)
T 3nv0_A           90 ANRASRISHGAMDIVVALSRLP--ATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKP--------ENTEEHDNYF  159 (205)
T ss_dssp             TSSCCSCEEHHHHHHHHHHHSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSC--------CSCSTTCEEE
T ss_pred             HHHHHHHhhCHHHHHHHHHhCC--CeEEecCceEEEEEEeCCCeEEEEEEEEEEEccccccc--------ccCCCCCcee
Confidence            0112224479999999999999  56899986  8999987  6999999999865100000        0124567999


Q ss_pred             cccceecCCC
Q psy6110         125 EQTPVEAPRS  134 (174)
Q Consensus       125 ~~~~~~~~~~  134 (174)
                      .|||+++|..
T Consensus       160 sRtFiL~P~~  169 (205)
T 3nv0_A          160 TRTFMVAPRG  169 (205)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEEEECC
Confidence            9999999964

>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2

Probab=99.07  E-value=4.6e-10  Score=91.50  Aligned_cols=106  Identities=13%  Similarity=0.109  Sum_probs=72.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhhccCc-----hhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHH-hCCCCcc
Q psy6110           1 MVMEVTPSPQCVGREFVRQYYTLLNQAP-----AHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ-QLNFRDC   74 (174)
Q Consensus         1 ~~m~~~ps~~~VG~~FV~qYYt~L~~~p-----~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~-sL~f~~~   74 (174)
                      |||. .-.--+.++.||++||..|+..+     .-|..|+...+.++.        +|+.+-+..+..+.+. +++  .+
T Consensus         8 ~~~~-~~~~~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~~Ii~--------NG~p~a~p~~fqeiw~~Q~p--~T   76 (184)
T 1of5_B            8 MVMN-DANQAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIF--------NATPFAQATVFLQMWQNQVV--QT   76 (184)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEE--------TTEEESCHHHHHHHHHHHSC--CC
T ss_pred             cccC-CccchhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCceEEE--------CCeEcCCHHHHHHHHHhcCC--Cc
Confidence            6777 44455689999999999999988     889999887778764        8888988999999998 888  56


Q ss_pred             cEEEeeeccccCC---CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110          75 HAKIRQVPVTQQF---PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS  134 (174)
Q Consensus        75 k~~I~SiDaQpS~---GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (174)
                      +|+|+++|||-+.   +|+|+|.|++.+++.. +   +             -+.++++|+|..
T Consensus        77 ~hel~S~D~HVIngsgsivv~VsgkVRFdEsg-r---d-------------~fgEtfvLvpn~  122 (184)
T 1of5_B           77 QHALTGVDYHAIPGSGTLICNVNCKVRFDESG-R---D-------------KMGQDATVPIQP  122 (184)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEECC----------------------------------
T ss_pred             eEEEEeEEEEEECCCCeEEEEEEEEEEECCCC-C---C-------------CCCCeEEECCCC
Confidence            9999999999987   5999999999997653 1   1             478899999874

>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}

Probab=94.52  E-value=0.034  Score=41.90  Aligned_cols=114  Identities=14%  Similarity=0.225  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCC--ceeecCCCCCCcCccccccHHHHHHHHHhCCCC---cccEEEeeeccccCC
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENS--LFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFR---DCHAKIRQVPVTQQF   87 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S--~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~---~~k~~I~SiDaQpS~   87 (174)
                      .+-.+.||.-|++ +.+.|..+|.++.  .++|.       .+....|.++|.+.+..+ |.   ..++++..+......
T Consensus        11 ~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p-------~g~~l~G~~ai~~~w~~~-f~~~~~~~i~~~~v~v~~~g   82 (144)
T 3gwr_A           11 EAAEDAFYAAFEARSLDDMMAVWARDDHVACIHP-------LAAPLNGRAAVAAGWRSM-FGAAGRFRLQVKAVHEIRQA   82 (144)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECT-------TCCCEESHHHHHHHHHHH-HHHHCCEEEEEEEEEEEECS
T ss_pred             HHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECC-------CCCCcccHHHHHHHHHHH-HcCCCcEEEEEEEEEEEecC
Confidence            3456778888884 7999999999884  44442       234689999999887643 21   234444444444333


Q ss_pred             -CcEEEEEeeecCC--CCCCCCCCCCCCCCCCCccccccccccceec--CCCCC
Q psy6110          88 -PTVKQVEESLPPV--TQPPSPPADPTPPSPPKEDEWKWNEQTPVEA--PRSPS  136 (174)
Q Consensus        88 -GILI~VtG~ls~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  136 (174)
                       ..++.+...+...  +.+. ...-.+++.+=.+|+||.-.--.-.+  |+++.
T Consensus        83 d~A~v~~~e~~~~~~~~g~~-~~~r~T~V~~r~~g~WrivhhH~S~~~~~~~~~  135 (144)
T 3gwr_A           83 DHVIRIVDEFLTIGDETAPR-PAILATNVYRREADGWRMVLHHASPLQVGAKAG  135 (144)
T ss_dssp             SEEEEEEEEEEEETTCSSCC-CCEEEEEEEEECSSSEEEEEEEEEECC------
T ss_pred             CEEEEEEEEEEEecCCCCce-eeEEEEEEEEEECCEEEEEEEecCCCCCCCccc
Confidence             2444455555542  2222 34455677777889999765433334  66543

>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20

Probab=93.42  E-value=0.16  Score=37.23  Aligned_cols=69  Identities=17%  Similarity=0.079  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCC-CCCcCccccccHHHHHHHHHhCC--CCcccEEEeeecc
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLD-APNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPV   83 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d-~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDa   83 (174)
                      +.||+.||..|++ +.+.|..+|.++..+.-.+.. ...+.| ...|.++|.+.+..+.  |..+++++..+-+
T Consensus         7 ~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~~~~p~~g-~~~G~~av~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
T 3dm8_A            7 WRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFG-ARQGKAAVLEVCRQIADSVRIYRYHRESVML   79 (143)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCE-EEESHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCCCcCCCCc-cccCHHHHHHHHHHHHHhcCcceEEEEEEEE
Confidence            7899999999995 689999999998766432210 001222 5789999999888663  3345666665543

>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}

Probab=92.95  E-value=0.17  Score=37.54  Aligned_cols=61  Identities=16%  Similarity=0.353  Sum_probs=46.0

Q ss_pred             HHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeee
Q psy6110          15 EFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQV   81 (174)
Q Consensus        15 ~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~Si   81 (174)
                      +.|+.||..+++ +.+.|..||.++..+.-      -..+....|.++|.+.+..+.  |.+.+++|..+
T Consensus        29 eiv~~y~~A~n~~D~d~~~~l~a~D~v~~d------~~~g~~~~Greai~~~~~~~~~~~~d~~~~v~~~   92 (158)
T 4h3u_A           29 EIVTAWAAAWTGTNPNALGTLFAADGTYVD------HAIGATMTGREQISGWKARTDAMIENVHVTITKA   92 (158)
T ss_dssp             HHHHHHHHHHHSSCHHHHHTTEEEEEEEEE------TTTTEEEESHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhcccceEec------cCCCceEecchhhhhhhhhhhccCCccceeEeEE
Confidence            578999999985 69999999999988742      124557899999999887652  44556666544

>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28

Probab=92.75  E-value=0.083  Score=39.79  Aligned_cols=110  Identities=17%  Similarity=0.155  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC---CCCcccEE--Eeeecccc
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL---NFRDCHAK--IRQVPVTQ   85 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL---~f~~~k~~--I~SiDaQp   85 (174)
                      --.+++..|+..++. +.+.+..+|.+++.++.       ..|....|.++|.+.+..+   .+....+.  +..+....
T Consensus        17 aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~-------~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~   89 (172)
T 3cu3_A           17 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFIT-------FEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVN   89 (172)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC-------TTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEe-------CCCCeEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeC
Confidence            446789999999985 69999999999999863       2456789999999987653   23333332  33332211


Q ss_pred             CCCcEEEEEeeecCCCCCCC---CCCCCCCCCCCCccccccccccc
Q psy6110          86 QFPTVKQVEESLPPVTQPPS---PPADPTPPSPPKEDEWKWNEQTP  128 (174)
Q Consensus        86 S~GILI~VtG~ls~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~  128 (174)
                      .-..++.+.+.+...+....   .....+.+..=.+|+||.-.-..
T Consensus        90 ~d~A~v~~~~~~~~~g~~~~~~~~~~~~t~v~~r~dG~WrI~~~~~  135 (172)
T 3cu3_A           90 SQLALMLVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLN  135 (172)
T ss_dssp             TTEEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEeCCCCCcCCccceEEEEEEEEeCCeEEEEEEEc
Confidence            00133333444655443111   11222333334578888765433

>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19

Probab=92.27  E-value=0.12  Score=37.28  Aligned_cols=65  Identities=15%  Similarity=0.198  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhhccC-c----hhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEe-eecccc
Q psy6110          14 REFVRQYYTLLNQA-P----AHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIR-QVPVTQ   85 (174)
Q Consensus        14 ~~FV~qYYt~L~~~-p----~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~-SiDaQp   85 (174)
                      ++++++|+..+++. +    +.|..+|.++..+.-        ....+.|.++|.+.|..+  .|.++++.+. .++.+.
T Consensus         6 ~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~d--------P~~~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~~~~   77 (121)
T 3dxo_A            6 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVD--------PLMQGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHG   77 (121)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEEC--------SSCEEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEEC--------CCCCcCCHHHHHHHHHHHHHHCCCcEEEEccCcceeC
Confidence            56788888888753 2    579999999999852        223599999999988654  2557899887 788876


Q ss_pred             C
Q psy6110          86 Q   86 (174)
Q Consensus        86 S   86 (174)
                      .
T Consensus        78 ~   78 (121)
T 3dxo_A           78 N   78 (121)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*

Probab=92.00  E-value=0.97  Score=35.47  Aligned_cols=77  Identities=13%  Similarity=0.264  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccccCCC
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVTQQFP   88 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQpS~G   88 (174)
                      ...+|...|-..|.. +...|.+||..+|.|.-      --.+...+|.+.|.++|.+-  ..-...+.|...=+-   |
T Consensus        21 ~EqqlA~~Yi~AlT~hDy~~L~~FynrdsVf~D------~ta~~~YtG~r~Ii~Fl~RaH~gvLey~fnieHmfns---G   91 (154)
T 3gzb_A           21 QEQQLAVKYMDALTEHDYKTLITFYNRDSIFFD------KTANRKYTGGRFIIDFLERAHQGVLEYDFNIEHMYNA---G   91 (154)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTCCTTCEEEE------TTTTEEEESHHHHHHHHHHHTTTCCCCEEEEEEEEEE---T
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHhCccceeee------eccCcceeCcHHHHHHHHHHhhhheeeccChhhhccC---C
Confidence            345778888888887 89999999999999963      23567899999999999852  112234556654221   6


Q ss_pred             cEEEEEeee
Q psy6110          89 TVKQVEESL   97 (174)
Q Consensus        89 ILI~VtG~l   97 (174)
                      =||+.+|.-
T Consensus        92 sLVVmiGnY  100 (154)
T 3gzb_A           92 SLVVMIGNY  100 (154)
T ss_dssp             TEEEEEEEE
T ss_pred             cEEEEEcce
Confidence            677777763

>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22

Probab=91.51  E-value=0.4  Score=34.71  Aligned_cols=49  Identities=14%  Similarity=0.334  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      ++.++.|+..++. +.+.|..+|.+++.++.       ..|....|.++|.+.+..+
T Consensus         6 ~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~-------~~g~~~~G~~aI~~~~~~~   55 (142)
T 2gxf_A            6 KDIISACDLAIQNEDFDTLMNYYSEDAVLVV-------KPGMIARGKEEIKKAFITI   55 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHTTSEEEEEEEEC-------SSSCEEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHhcCCCEEEEc-------CCCCcccCHHHHHHHHHHH
Confidence            4668899999985 68999999999998863       2366799999999998854

>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}

Probab=91.41  E-value=0.093  Score=38.91  Aligned_cols=117  Identities=10%  Similarity=0.082  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeeccccCC
Q psy6110          11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPVTQQF   87 (174)
Q Consensus        11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDaQpS~   87 (174)
                      +--++.+++|+..++. +.+.|..+|.++..+..      ...+....|.++|.+.+..+-  +....+.+..+...  .
T Consensus        20 ~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~------~~~~~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~~--~   91 (156)
T 3h51_A           20 REVAALFDTWNAALATGNPHKVADLYAPDGVLLP------TVSNEVRASREQIENYFEMFLTKKPKGVINYRTVRLL--D   91 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEC------SSCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEEC--S
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEec------CCCCccccCHHHHHHHHHHHHhhCCCCcccceEEEEe--c
Confidence            3456778889988884 69999999999987752      123456789999998887541  11223333333321  1


Q ss_pred             CcEEEEEeeecC-----CCCCCCCCCCCCCCCCCCccccccccccceecCCCC
Q psy6110          88 PTVKQVEESLPP-----VTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRSP  135 (174)
Q Consensus        88 GILI~VtG~ls~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (174)
                      +=+..|.|....     ++.+..-..--+.+..=.+|+||.-..-.-.+|+.+
T Consensus        92 gd~A~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG~WkIv~~H~S~~p~~~  144 (156)
T 3h51_A           92 DDSAVDAGVYTFTLTDKNGKKSDVQARYTFVYEKRDGKWLIINHHSSAMPEVD  144 (156)
T ss_dssp             SSEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECSCCC
T ss_pred             CCeEEEEEEEEEEEEcCCCCeEEEEeEEEEEEEEECCEEEEEEEeecCCCccc
Confidence            222333444322     222111111223444456889999888777777644

>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}

Probab=91.10  E-value=0.66  Score=31.95  Aligned_cols=54  Identities=15%  Similarity=0.150  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHh
Q psy6110           8 SPQCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ   68 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~s   68 (174)
                      +..+.=++.+++|+..++. +.+.|..+|.++..+..+       .+..+.|.++|.+.+..
T Consensus         3 ~~~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~-------~~~~~~G~~~i~~~~~~   57 (129)
T 3hx8_A            3 SAKEAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPP-------DMARVDGRQNIQKLWQG   57 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECT-------TSCCEESHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCC-------CCCcccCHHHHHHHHHH
Confidence            3445557889999999985 689999999999998532       34468899999988764

>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}

Probab=91.09  E-value=0.22  Score=35.21  Aligned_cols=83  Identities=11%  Similarity=0.106  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCC-CCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccccC
Q psy6110          11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDA-PNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVTQQ   86 (174)
Q Consensus        11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~-~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQpS   86 (174)
                      +-.+++++.||..+++ +.+.|..+|.++..+.-..... ...++....|.++|.+.+..+  .|.++++++..+.+   
T Consensus         8 ~~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~~p~~~~~~g~~~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~~~---   84 (122)
T 3h3h_A            8 AFAQQFSREWIDAWNAHDLDAILSHYADGFEMSSPMIVQIAGEPSGRLRGKEQVGAYWREALRMIPDLHFEWIATLA---   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECHHHHHHHC-CCCEEEHHHHHHHHHHHHHHHCTTCCCEEEEEEE---
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHhcCCCEEEECCCcccccCCCCCcEEcHHHHHHHHHHHHHHCCCcEEEEEEEEe---
Confidence            3457899999999985 6999999999999875210000 001235789999999988753  24466677655432   


Q ss_pred             CCcEEEEEee
Q psy6110          87 FPTVKQVEES   96 (174)
Q Consensus        87 ~GILI~VtG~   96 (174)
                      .+..+.+.+.
T Consensus        85 ~~~~~~~~~~   94 (122)
T 3h3h_A           85 GVDSVAIHYR   94 (122)
T ss_dssp             CSSEEEEEEE
T ss_pred             cCcEEEEEEE
Confidence            1334445554

>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24

Probab=89.84  E-value=0.27  Score=36.83  Aligned_cols=59  Identities=14%  Similarity=0.271  Sum_probs=44.6

Q ss_pred             HHHHHHHHhhcc------CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeee
Q psy6110          15 EFVRQYYTLLNQ------APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQV   81 (174)
Q Consensus        15 ~FV~qYYt~L~~------~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~Si   81 (174)
                      .=|++||..++.      +.+.|..||.+++.+..        .+....|.++|.+.+..+  .|..++|.+...
T Consensus         6 ~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~~~--------~~~~~~G~~ai~~F~~~~~~a~~~~~~~~~~~   72 (131)
T 3er7_A            6 TTLDRYFDLFDASRTDEKAFDDLISLFSDEITFVL--------NGQEQHGIDAWKQFVRMVFTANQDIKHMYAGW   72 (131)
T ss_dssp             CHHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEEEE--------TTEEEESHHHHHHHHHHHHHHEEEEEEEECCC
T ss_pred             HHHHHHHHHHhhccCCccCHHHHHHHhCCCeEecC--------CCCCcCChHHHHHHHHHHHhhCcCceEEEEEE
Confidence            348999999983      37889999999999821        344678999999999865  355677766654

>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18

Probab=89.46  E-value=0.44  Score=34.11  Aligned_cols=51  Identities=18%  Similarity=0.195  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHH
Q psy6110          10 QCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQ   67 (174)
Q Consensus        10 ~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~   67 (174)
                      ++|-..|-++---+-..+.+.|..+|.++..+++-      ..+....|.++|.+ +.
T Consensus        14 ~ei~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~------~~~~~~~G~~~i~~-~~   64 (129)
T 2rcd_A           14 ADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRY------GAGENLYGIEEIRA-FR   64 (129)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEE------ETTEEEESHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEE------CCCCccCCHHHHHH-HH
Confidence            34555554433344446799999999999876542      13456789999999 55

>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}

Probab=88.04  E-value=1.4  Score=32.34  Aligned_cols=48  Identities=13%  Similarity=0.181  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHh
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ   68 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~s   68 (174)
                      -++++..|+..++. +.+.|..+|.++..++.        .|....|.++|.+.+..
T Consensus        21 i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~~--------~g~~~~Gr~aI~~~~~~   69 (143)
T 4i4k_A           21 VAALPARIVAAWADHDADRFADVFAEDGTMIL--------PGLFRKGRENIRTHMAA   69 (143)
T ss_dssp             HHTHHHHHHHHHHTTCHHHHHTTEEEEEEEEE--------TTEEEESHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhcCceEEe--------CCCeecCHHHHHHHHHH
Confidence            46788999999985 68999999999999864        34568999999988764

>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}

Probab=87.84  E-value=0.55  Score=33.19  Aligned_cols=59  Identities=15%  Similarity=0.178  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeecc
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPV   83 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDa   83 (174)
                      ++.|+.||..+++ +.+.|..||.++..+ |         + ...|.+++.+.+..+  .|.+.+++|..+=+
T Consensus         6 ~~~v~~~~~~~~~~d~~~~~~~~a~d~~~-~---------~-~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~   67 (128)
T 3ehc_A            6 NDIYLAYLDSLNHQAFDELGTFVDDNVEH-N---------G-RPFGLSGYRDMLVKDFADIPDLRFEAEILVS   67 (128)
T ss_dssp             HHHHHHHHHHHHTTCGGGGGGTEEEEEEE-T---------T-BCCHHHHHHHHHHHHHHHCTTCCCCEEEEEE
T ss_pred             HHHHHHHHHHHhcCCHHHHHHhcCcceEe-C---------C-CCCCHHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence            5778999998885 578999999998654 2         2 468899988877654  24466677665444

>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}

Probab=87.66  E-value=1.3  Score=33.05  Aligned_cols=65  Identities=14%  Similarity=0.151  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccc
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVT   84 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQ   84 (174)
                      -++.|+.||..+++ +.+.|..+|.++..+...       ......|.++|.+.+..+  .|.+.+++|..+=+.
T Consensus        36 n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p-------~~g~~~G~e~~~~~~~~~~~~~pd~~~~i~~~~~~  103 (159)
T 3k0z_A           36 MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTL-------PKGRPQGTEGLKFAAQNFRKIVPNIHCEIEDLLVV  103 (159)
T ss_dssp             HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSC-------CTTCCSSHHHHHHHHHHHHTTCCSEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecC-------CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEEE
Confidence            47789999999986 689999999998665211       112578999999888754  355777777665443

>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A

Probab=87.35  E-value=0.53  Score=31.87  Aligned_cols=52  Identities=13%  Similarity=0.189  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      --++.|++||..+++ +.+.|..+|.++..+...      ..+....|.++|.+.+..+
T Consensus         6 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~------~~~~~~~G~~~i~~~~~~~   58 (125)
T 1ohp_A            6 HMTAVVQRYVAALNAGDLDGIVALFADDATVENP------VGSEPRSGTAAIREFYANS   58 (125)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESS------TTSCCEESHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHcCCCeEEECC------CCCCCccCHHHHHHHHHHh
Confidence            457789999999985 689999999999876531      1234789999999998865

>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*

Probab=86.46  E-value=1.1  Score=32.21  Aligned_cols=51  Identities=14%  Similarity=0.368  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      --++.|+.||..+++ +.+.|..+|.++..+...+       .....|.++|.+.+..+
T Consensus        23 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~~~-------~~~~~G~~~i~~~~~~~   74 (149)
T 1nww_A           23 PDEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMP-------LPPAYGRDAVEQTLAGL   74 (149)
T ss_dssp             HHHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETT-------SCCEESHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHhCCCEEEEcCC-------CCCccCHHHHHHHHHHH
Confidence            346789999999886 6899999999999875421       13578999999988765

>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20

Probab=86.26  E-value=3.8  Score=29.48  Aligned_cols=53  Identities=9%  Similarity=0.131  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN   70 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~   70 (174)
                      --++-|++||..|++ +.+.|..||.++..+.+.      ..+....|.++|.+.+...+
T Consensus         6 ~~~~~v~~~~~a~~~~D~~~l~~llaeD~v~~~P------~~~~~~~Gr~~~~~~~~~~~   59 (128)
T 3en8_A            6 KIREALNAHWQASAAGDFDAEHDIYDDDAICDYP------QSGERILGRMNLQALRSHHP   59 (128)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEET------TTTEEEESHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECC------CCCCEEECHHHHHHHHHHCC
Confidence            346789999998885 689999999999987652      12446889999999887765

>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27

Probab=86.06  E-value=0.65  Score=32.35  Aligned_cols=65  Identities=17%  Similarity=0.249  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CC-cccEEEeeec
Q psy6110          11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FR-DCHAKIRQVP   82 (174)
Q Consensus        11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~-~~k~~I~SiD   82 (174)
                      .--++.++.||..++. +.+.+..+|.++..+...       .+....|.++|.+.+..+-  +. ...+++..+.
T Consensus        11 ~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~-------~~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i~   79 (135)
T 3d9r_A           11 AVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGP-------GRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVV   79 (135)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECT-------TSCCEESHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECC-------CCCcccCHHHHHHHHHHHHhhcCCceeEEEEEEE
Confidence            3456789999999995 689999999999987642       1234679999998887642  21 3344555544

>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=86.06  E-value=1.8  Score=30.68  Aligned_cols=69  Identities=12%  Similarity=0.214  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC-CCCcccEEEeee
Q psy6110          10 QCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL-NFRDCHAKIRQV   81 (174)
Q Consensus        10 ~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL-~f~~~k~~I~Si   81 (174)
                      .+-.++.|++||..+++ +.+.|..+|.++..+...+   ....+..+.|.++|.+.+..+ .|.+.+++|..+
T Consensus        16 ~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~p~---~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~i~~~   86 (129)
T 3fh1_A           16 SEQTAEIMRRFNDVFQLHDPAALPELIAEECVIENTV---PAPDGARHAGRQACVQLWSAIATQPGTRFDLEET   86 (129)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEECSC---STTTCCEEESHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHhcCCCEEEECCC---CCCCCCcccCHHHHHHHHHHHhcCCCceEEEeEE
Confidence            34567899999999985 6899999999988875321   112455679999999988752 133556666543

>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}

Probab=85.92  E-value=1.7  Score=31.25  Aligned_cols=69  Identities=12%  Similarity=0.166  Sum_probs=46.8

Q ss_pred             HHHHHHHHHH-hhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeeccc
Q psy6110          13 GREFVRQYYT-LLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVT   84 (174)
Q Consensus        13 G~~FV~qYYt-~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQ   84 (174)
                      -++.|++||. .++ .+.+.+..+|.++..+.|.-.  ..+ .....|.++|.+.+..+  .|.+.+++|..+-+.
T Consensus         8 ~~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~~~~p~--~~~-~g~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~~   80 (146)
T 3f9s_A            8 AKEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPG--DPW-EGRELDVAGYKERVKTLRAAFPDQCFDIQGLFAD   80 (146)
T ss_dssp             HHHHHHHHHHHHTTTCCGGGHHHHEEEEEEEEECTT--CTT-TTCEECHHHHHHHHHHHHHHSTTCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHcCCCeeeccCCC--CCC-CCCcCCHHHHHHHHHHHHhhCCCcEEEEEEEEEe
Confidence            4567888996 776 468999999999887455210  001 12578999999887754  255677877765443

>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...

Probab=85.44  E-value=0.69  Score=32.15  Aligned_cols=53  Identities=15%  Similarity=0.216  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110          11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      +--++.+++||..+++ +.+.|..+|.++..+...      ..+....|.++|.+.+..+
T Consensus         7 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p------~~~~~~~G~~~i~~~~~~~   60 (131)
T 1oh0_A            7 QEVQGLMARYIELVDVGDIEAIVQMYADDATVEDP------FGQPPIHGREQIAAFYRQG   60 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESS------TTSCCEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHcCCCEEEEcC------CCCCCcccHHHHHHHHHHH
Confidence            3457789999999986 689999999999887531      1234789999999988765

>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18

Probab=85.32  E-value=2.1  Score=31.43  Aligned_cols=55  Identities=13%  Similarity=0.108  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110          10 QCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN   70 (174)
Q Consensus        10 ~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~   70 (174)
                      ++|-..|.+.|--+...+.+.|..+|.++..+++-      ..+....|.++|..+...+.
T Consensus        11 ~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~------~~g~~l~G~~~I~a~r~~~~   65 (129)
T 2owp_A           11 AQVQAAFVEYERALVENDIEAMNALFWHTPETVRY------GIAEVQHGGEAIRAWRERCE   65 (129)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEE------CSSCEEESHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHhhccCCCcEEEe------CCCCccCCHHHHHHHHHhcC
Confidence            45666665555555557899999999999875542      13567899999999666553

>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*

Probab=85.02  E-value=2.5  Score=37.00  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHh-CCCCcccEEEeeeccccCC--
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ-LNFRDCHAKIRQVPVTQQF--   87 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~s-L~f~~~k~~I~SiDaQpS~--   87 (174)
                      |-+.=|.+|+..||. +-+.+..+|.++..+.=      -++ .+..|+++|...+.. +.  +.+.+...-=+.+..  
T Consensus       193 i~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~Lep------Pf~-~PIvGreAI~~y~~~eaq--~~~l~P~~g~~ep~e~g  263 (323)
T 3mg1_A          193 VTNATVLNYMDNLNANDFDTLIELFTSDGALQP------PFQ-RPIVGKENVLRFFREECQ--NLKLIPERGVTEPAEDG  263 (323)
T ss_dssp             BCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC------TTS-CCEESHHHHHHHHHHHCT--TCEEEEEEEEEEECGGG
T ss_pred             cchHHHHHHHHHhcccCHHHHHHHccCCCeeCC------CCC-CCccCHHHHHHHHHHHhc--cCEEeeccCccccccCC
Confidence            335668999999996 58999999999999842      355 789999999999974 33  345555554444544  


Q ss_pred             CcEEEEEeeecC
Q psy6110          88 PTVKQVEESLPP   99 (174)
Q Consensus        88 GILI~VtG~ls~   99 (174)
                      +.-+.|+|+++.
T Consensus       264 ~~qi~vtGkVqT  275 (323)
T 3mg1_A          264 FTQIKVTGKVQT  275 (323)
T ss_dssp             CEEEEEEEEEEC
T ss_pred             CceEEEEEEEEc
Confidence            588999999965

>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9

Probab=84.69  E-value=1.6  Score=32.14  Aligned_cols=63  Identities=8%  Similarity=0.166  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeecc
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPV   83 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDa   83 (174)
                      -.++.|+.||..++. +.+.+..+|.++..+..         +....|.++|.+.+..+  .|.+.+++|..+-+
T Consensus         5 ~~~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~~---------p~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~   70 (158)
T 2gey_A            5 ERKALCLEMVAAWNRWDLSGIIKHWSPDIVHYS---------EDNEVSSADMVKLMEGGLKAFPDLQLEVKSIMA   70 (158)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHTTEEEEEEEEE---------TTEEECHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHcCCCeEEeC---------CCCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEE
Confidence            346788999998885 68899999999876542         23578999998887754  24466777766544

>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9

Probab=83.60  E-value=2.1  Score=31.10  Aligned_cols=64  Identities=11%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeecc
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPV   83 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDa   83 (174)
                      -.++.|++||..++. +.+.+..+|.++..+..      .  .....|.++|.+.+..+  .|.+.+++|..+=+
T Consensus         5 ~~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~------~--~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~   71 (152)
T 2gex_A            5 ANKERCLEMVAAWNRWDVSGVVAHWAPDVVHYD------D--EDKPVSAEEVVRRMNSAVEAFPDLRLDVRSIVG   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC------T--TSCEECHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHcCCCeEEeC------C--CCCCCCHHHHHHHHHHHHHhCCCcEEEEEEEEE
Confidence            346788999988875 57899999999876531      1  33678999998887654  24466777766543

>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16

Probab=82.98  E-value=0.39  Score=35.10  Aligned_cols=48  Identities=15%  Similarity=0.183  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHhhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHH-HHH
Q psy6110          12 VGREFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHE-HIQ   67 (174)
Q Consensus        12 VG~~FV~qYYt~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~e-ki~   67 (174)
                      --++.+++|+.-++ .+.+.|..+|.++..+.++       .+ ...|.++|.+ .+.
T Consensus        31 ~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~~~~-------~g-~~~g~~~~~~~~~~   80 (148)
T 3bb9_A           31 AAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEG-------GK-VERSLTEYANHHML   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEET-------TE-EECSHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHhhCCCeEEEeC-------CC-ccCCHHHHHHHhHH
Confidence            34567888888887 5799999999999887652       12 2789999988 443

>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9

Probab=82.79  E-value=0.98  Score=32.14  Aligned_cols=65  Identities=12%  Similarity=0.175  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCC-cccEEEeeecc
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFR-DCHAKIRQVPV   83 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~-~~k~~I~SiDa   83 (174)
                      .++.|++||..+++ +.+.+..+|.++..+...      ..+....|.++|.+.+..+  .|. +.+++|..+=+
T Consensus         4 ~~~~v~~~~~a~~~~d~~~~~~~~a~d~~~~~~------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~   72 (144)
T 1sjw_A            4 QTEIVRRMVSAFNTGRTDDVDEYIHPDYLNPAT------LEHGIHTGPKAFAQLVGWVRATFSEEARLEEVRIEE   72 (144)
T ss_dssp             HHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGG------GGGTCCSHHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHcCcCeEEccC------CCCCCCCCHHHHHHHHHHHHHhCCCCcEEEEEEEEE
Confidence            46788999998875 678999999998664211      1111238999998887755  244 56777765443

>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}

Probab=82.76  E-value=1.8  Score=33.58  Aligned_cols=61  Identities=13%  Similarity=0.178  Sum_probs=46.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110           5 VTPSPQCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus         5 ~~ps~~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      ......+.-++.|++||..++. +.+.|..|+.++..+..+.    ...+....|.++|.+.+..+
T Consensus         4 ~~~Ms~~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~p~----~~p~~~~~Greai~~~f~~~   65 (156)
T 3g16_A            4 APTLSRAAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYFPA----GMYGGAFRGAAQIAHRWRTA   65 (156)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECBT----TSTTSCEESHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEecCC----CCCCCCccCHHHHHHHHHHH
Confidence            3445567889999999999996 5899999999988864321    12255678999999988754

>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=82.40  E-value=1.7  Score=30.10  Aligned_cols=64  Identities=13%  Similarity=0.145  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeecc
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPV   83 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDa   83 (174)
                      .+.|+.||..|+. +.+.+..||.++... |. .    ..+....|.++|.+.+..+-  |.+.+++|..+=+
T Consensus         5 ~~~v~~~~~a~n~~D~~~~~~~~a~D~v~-h~-~----~~~~~~~G~~~~~~~~~~~~~~~p~~~~~i~~~~~   71 (117)
T 3ff2_A            5 LETAKAMIAAYNAQDVDTYVSYMTDDACE-AN-Y----RGDVVREGKEGTRSGLAAAFARWPQNHAEIKDAQQ   71 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTEEEEEEE-EE-T----TSCEEECHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred             HHHHHHHHHHHcccCHHHHHHhcCCcEEE-Ee-C----CCCccccCHHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence            4679999999985 689999999987553 31 1    01346789999998876541  2245666665433

>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}

Probab=82.35  E-value=0.5  Score=35.21  Aligned_cols=51  Identities=20%  Similarity=0.257  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHhhccCchhHhhccccCC--ceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110          11 CVGREFVRQYYTLLNQAPAHLHRFYSENS--LFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        11 ~VG~~FV~qYYt~L~~~p~~L~rFY~~~S--~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      +|-..|-+.+--+...+.+.|-.+|.++.  .+++.       .| ...|.++|.+.+.+-
T Consensus        11 ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~-------~g-~~~G~~~i~~~~~~~   63 (145)
T 3soy_A           11 EITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHP-------RG-HERGWSQIAENFYGT   63 (145)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEET-------TE-EEESHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcC-------CC-cccCHHHHHHHHHHh
Confidence            45555544444445567999999997764  34431       23 478999999888653

>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10

Probab=82.22  E-value=2.1  Score=30.37  Aligned_cols=65  Identities=11%  Similarity=0.093  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHH-HHHHhCC--CCcccEEEeee
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIH-EHIQQLN--FRDCHAKIRQV   81 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~-eki~sL~--f~~~k~~I~Si   81 (174)
                      ++.|++||..+++ +.+.|..+|.++..+...+.  . -.+....|.++|. +.+..+.  |...++++..+
T Consensus        15 ~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~~~~~--~-p~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~   83 (140)
T 3ec9_A           15 YQIVADHYAASDRHDPAAMMADIAPAIEWTEMAG--F-PCAGTYRSADEIVRNVFRRLGEEWDGYTFKLDAL   83 (140)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTT--S-TTCEEECSHHHHHHHTHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEcCC--C-ccceEEcCHHHHHHHHHHHHHhhCCcceeEEEEE
Confidence            5678899988875 58999999999988654220  0 1124678999996 4565442  33455555544

>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*

Probab=82.21  E-value=1.1  Score=32.82  Aligned_cols=66  Identities=11%  Similarity=0.081  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCC-cccEEEeeecc
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFR-DCHAKIRQVPV   83 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~-~~k~~I~SiDa   83 (174)
                      -.++.|++||..+++ +.+.|..+|.++..+...      ..+....|.++|.+.+..+  .|. +.+++|..+=+
T Consensus        12 ~~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~p------~~~~~~~G~~~~~~~~~~~~~~~p~d~~~~i~~~~~   81 (153)
T 2f99_A           12 EQIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGT------LEFTSLRGPELFAINVAWVKKTFSEEARLEEVGIEE   81 (153)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGG------TTTCCCCHHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHhcCCCeEEecC------CCCCCCCCHHHHHHHHHHHHHHCCCCcEEEEEEEEE
Confidence            356788999998884 678999999998664211      1122248999998887754  244 56677665433

>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A

Probab=81.64  E-value=1.3  Score=31.35  Aligned_cols=66  Identities=5%  Similarity=-0.007  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCC-CCCcCccccccHHHHHHHHHhCC--CCcccEEEe
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLD-APNRETKQVVGQEQIHEHIQQLN--FRDCHAKIR   79 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d-~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~   79 (174)
                      .++.+++||..++. +.+.|..+|.++..+...... ....+|....|.++|.+.+..+.  + .+++.+.
T Consensus         9 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~~~~~-~~~~~~~   78 (139)
T 2a15_A            9 ALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTHIAAN-RLTVTCE   78 (139)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHHTTTT-TCEEEEE
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHhcCCCEEEECCCCCCccCCCCceeecHHHHHHHHHHhcccc-eeEEecc
Confidence            45678999999985 689999999999887532100 00013344799999999987652  3 4455443

>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0

Probab=81.37  E-value=0.97  Score=31.81  Aligned_cols=55  Identities=13%  Similarity=0.178  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      --++.|++||..+++ +.+.|..+|.++..+...+.   .--+....|.++|.+.+..+
T Consensus         6 ~~~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~p~~---~p~~g~~~G~~~i~~~~~~~   61 (135)
T 3fgy_A            6 ENVQIVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGE---WPLAGTHRGHAALAALLQKA   61 (135)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEECSS---STTCEEEEHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEEcCC---CccceEEeCHHHHHHHHHHH
Confidence            346778899988885 68999999999987654220   00123578999998888765

>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8

Probab=81.36  E-value=2.3  Score=30.73  Aligned_cols=63  Identities=8%  Similarity=0.168  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeec
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVP   82 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiD   82 (174)
                      -.++.|++||..+++ +.+.|..+|.++..+...       .+....|.++|.+.+..+.  | +.+++|..+-
T Consensus        16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~~~-------~~~~~~G~~~i~~~~~~~~~~~-~~~~~i~~~~   81 (149)
T 2bng_A           16 EAIRAVEAFLNALQNEDFDTVDAALGDDLVYENV-------GFSRIRGGRRTATLLRRMQGRV-GFEVKIHRIG   81 (149)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEET-------TTEEEECHHHHHHHHHTTTTTC-EEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEeC-------CCCCccCHHHHHHHHHHHHhhc-CcEEEEEEEE
Confidence            457789999998885 689999999999766421       1245789999999998764  3 4455555543

>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*

Probab=80.66  E-value=3.3  Score=33.10  Aligned_cols=87  Identities=17%  Similarity=0.161  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeeccccCC-C
Q psy6110          12 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPVTQQF-P   88 (174)
Q Consensus        12 VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDaQpS~-G   88 (174)
                      --++=|++|+..+.++++.+..||.++..+.+...+  ........|.++|.+.+..+.  |.+  .++..++...+. +
T Consensus        42 ~nr~vV~~yl~~~~~D~~~~~eLfAeDav~e~P~~~--~G~P~r~~GReai~~~~~~~~~~~~d--~~~~~~~v~~taDp  117 (185)
T 3jum_A           42 HNRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTD--SGQPIAIRGREKLGEHAVWSLQCFPD--WVWTDIQIFETQDP  117 (185)
T ss_dssp             HHHHHHHHHHHCCGGGGGGGGGGEEEEEEEEESCCT--TSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEECCSST
T ss_pred             HHHHHHHHHHHHhccCHHHHHHhCCCCEEEEecCCC--CCCCccccCHHHHHHHHHHHHhhCCC--CeeeEEEEEEecCC
Confidence            345668999999999999999999999998663211  112235889999999986542  332  344445544443 3


Q ss_pred             --cEEEEEe--eecCCCC
Q psy6110          89 --TVKQVEE--SLPPVTQ  102 (174)
Q Consensus        89 --ILI~VtG--~ls~~~~  102 (174)
                        |++-..|  ++...|.
T Consensus       118 d~VvvE~~~~Gtv~~TGk  135 (185)
T 3jum_A          118 NWFWVECRGEGAIVFPGY  135 (185)
T ss_dssp             TEEEEEEEEEEEECCTTS
T ss_pred             CEEEEEEEEEEEEcCCCC
Confidence              4444443  3444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1zo2a1	117	d.17.4.2 (A:10-126) Nuclear transport factor-2 (NT	3e-20
d2qiya1	139	d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {B	3e-20
d1gy7a_	121	d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {B	4e-20
d1gy6a_	125	d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {R	1e-19
d1jkga_	139	d.17.4.2 (A:) NTF2-related export protein 1 (p15)	2e-16

>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]} Length = 117

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Cryptosporidium parvum [TaxId: 5807]

 Score = 79.1 bits (195), Expect = 3e-20
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 12 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
          +G++FV+ YY         L   Y   S+              Q  GQ  I      LNF
Sbjct: 4  IGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED--------TQFQGQANIVNKFNSLNF 55

Query: 72 RDCHAKIRQV 81
          +    +I +V
Sbjct: 56 QRVQFEITRV 65

>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: UBP3-associated protein BRE5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.3 bits (195), Expect = 3e-20
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 8  SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLD-------APNRETKQVVGQE 60
          + Q +   F++ YY  +   P+ L  FY+  +   H                T +V G+E
Sbjct: 2  TVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRE 61

Query: 61 QIHEHIQQLN--FRDCHAKIRQVPVTQQFPT 89
           I++   + +   R    K+  +        
Sbjct: 62 NINKFFSRNDAKVRSLKLKLDTIDFQYTGHL 92

>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 121

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.1 bits (195), Expect = 4e-20
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 8/73 (10%)

Query: 9  PQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQ 68
             + + F + YY   +   + L   Y   S+              Q+ G + I E +  
Sbjct: 2  FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFET--------SQLQGAKDIVEKLVS 53

Query: 69 LNFRDCHAKIRQV 81
          L F+    +I  +
Sbjct: 54 LPFQKVQHRITTL 66

>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 125

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.6 bits (191), Expect = 1e-19
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 7  PSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHI 66
          P  + +G  F++ YY L +     L   Y + S     G        +Q  G+  I E +
Sbjct: 3  PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEG--------QQFQGKAAIVEKL 54

Query: 67 QQLNFRDCHAKIRQV 81
            L F+     I   
Sbjct: 55 SSLPFQKIQHSITAQ 69

>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-related export protein 1 (p15)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (170), Expect = 2e-16
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 12 VGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNF 71
             EFV  YYT +++    L R Y   +  +  G          V GQE + E  + L  
Sbjct: 15 AAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNG--------NAVSGQESLSEFFEMLPS 66

Query: 72 RDCHAKIRQV 81
               +I  V
Sbjct: 67 --SEFQISVV 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1gy7a_	121	Nuclear transport factor-2 (NTF2) {Baker's yeast (	99.94
d1gy6a_	125	Nuclear transport factor-2 (NTF2) {Rat (Rattus nor	99.94
d1zo2a1	117	Nuclear transport factor-2 (NTF2) {Cryptosporidium	99.94
d1jkga_	139	NTF2-related export protein 1 (p15) {Human (Homo s	99.9
d2qiya1	139	UBP3-associated protein BRE5 {Baker's yeast (Sacch	99.88
d1of5b_	165	mRNA transport regulator MTR2 {Baker's yeast (Sacc	99.45
d1q40b_	205	NTF2-like domain of mRNA export factor MEX67 {Yeas	99.06
d1jkgb_	186	NTF2-like domain of Tip associating protein, TAP {	98.84
d1of5a_	221	NTF2-like domain of mRNA export factor MEX67 {Bake	98.78
d1q42a_	174	mRNA transport regulator MTR2 {Yeast (Candida albi	97.36
d3en8a1	127	Uncharacterized protein BxeB2092 {Burkholderia xen	95.36
d1m98a2	142	Orange carotenoid protein, C-terminal domain {Cyan	94.45
d2owpa1	128	Hypothetical protein BxeB1374 {Burkholderia xenovo	94.21
d3dm8a1	135	Uncharacterized protein Rpa4348 {Rhodopseudomonas	94.08
d2rcda1	127	Uncharacterized protein ECA3500 {Pectobacterium at	93.28
d1oh0a_	125	Delta-5-3-ketosteroid isomerase, steroid delta-iso	93.03
d3cu3a1	162	Uncharacterized protein NpunR1993 {Nostoc punctifo	92.38
d3dmca1	133	Uncharacterized protein Ava2261 {Anabaena variabil	91.47
d3dxoa1	117	Uncharacterized protein Atu0744 {Agrobacterium tum	90.67
d2bnga1	132	Uncharacterized protein Mb2760 {Mycobacterium tube	90.64
d3b7ca1	121	Uncharacterized protein SO0125 {Shewanella oneiden	90.53
d1z1sa1	129	Uncharacterized protein PA3332 {Pseudomonas aerugi	90.51
d1ohpa1	125	Delta-5-3-ketosteroid isomerase, steroid delta-iso	89.42
d1nwwa_	145	Limonene-1,2-epoxide hydrolase {Rhodococcus erythr	89.18
d2gxfa1	128	Hypothetical protein YybH {Bacillus subtilis [TaxI	87.88
d3cnxa1	153	Uncharacterized protein SAV4671 {Streptomyces aver	87.88
d3ebta1	131	Uncharacterized protein BPSS0132 {Burkholderia pse	86.59
d1s5aa_	139	Hypothetical protein YesE {Bacillus subtilis [TaxI	86.23
d2f86b1	129	Association domain of calcium/calmodulin-dependent	85.74
d2geya1	144	Putative hydroxylase AclR {Streptomyces galilaeus	83.96
d3d9ra1	132	Uncharacterized protein ECA1476 {Pectobacterium at	82.71
d2gexa1	138	Nogalamycin biosynthesis protein SnoL {Streptomyce	82.61
d3ec9a1	130	Uncharacterized protein BTHI0051 {Burkholderia tha	82.6
d2a15a1	132	Hypothetical protein Rv0760c {Mycobacterium tuberc	81.52
d2k54a1	123	Uncharacterized protein Atu0742 {Agrobacterium tum	80.47

>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.7e-28  Score=183.20  Aligned_cols=101  Identities=18%  Similarity=0.279  Sum_probs=90.6

Q ss_pred             CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC
Q psy6110           8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF   87 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~   87 (174)
                      ++++||++||++||+.|+++|+.|++||.++|.|+|        +|+.+.|+++|.++|++|++++++++|.++||||+.
T Consensus         1 d~~~Ia~~Fv~~YY~~l~~~r~~L~~~Y~~~s~l~~--------~g~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Qp~~   72 (121)
T d1gy7a_           1 DFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTF--------ETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPAS   72 (121)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESS
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHHcCCCcEEEE--------CCeEecCHHHHHHHHHhCCCcccEEEEeeEeeEEcc
Confidence            578999999999999999999999999999999987        678899999999999999999999999999999965


Q ss_pred             ---CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecC
Q psy6110          88 ---PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAP  132 (174)
Q Consensus        88 ---GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (174)
                         +|||+|+|.++.+++                ..++.|.|+|+|+|
T Consensus        73 ~~~~ili~V~G~~~~~~~----------------~~~~~F~qtF~L~~  104 (121)
T d1gy7a_          73 PYGDVLVMITGDLLIDEE----------------QNPQRFSQVFHLIP  104 (121)
T ss_dssp             TTSCEEEEEEEEEEETTC----------------SSCEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEEECCC----------------CCcceeEEEEEEEe
Confidence               699999999998653                23467788887776

>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=4.6e-28  Score=183.24  Aligned_cols=103  Identities=20%  Similarity=0.268  Sum_probs=94.0

Q ss_pred             CCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeecccc
Q psy6110           6 TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQ   85 (174)
Q Consensus         6 ~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQp   85 (174)
                      +|++++||++||++||+.|+++|+.|++||.++|.|+|        +|+.+.|+++|.++|++|++++++++|.++|||+
T Consensus         2 ~p~~e~ig~~Fv~~YY~~l~~~r~~L~~~Y~~~S~l~~--------~g~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Q~   73 (125)
T d1gy6a_           2 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTW--------EGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQP   73 (125)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHCSCSCEEEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCHHHHHHHcCCCcEEEE--------CCccccCHHHHHHHHHcCCCcccEEEEeEEEEEE
Confidence            79999999999999999999999999999999999987        6788999999999999999999999999999999


Q ss_pred             CC--CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110          86 QF--PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR  133 (174)
Q Consensus        86 S~--GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (174)
                      +.  +|||+|+|.++.++++                 +|.|.|||+|+|.
T Consensus        74 ~~~~~ili~V~G~~~~~~~~-----------------~~~F~qtF~L~~~  106 (125)
T d1gy6a_          74 TPDSCIISMVVGQLKADEDP-----------------IMGFHQMFLLKNI  106 (125)
T ss_dssp             CTTSCEEEEEEEEEEETTSC-----------------CEEEEEEEEEEEE
T ss_pred             cCCCCEEEEEEEEEEECCCC-----------------CcceEEEEEEecc
Confidence            98  7999999999976643                 3667888888653

>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Cryptosporidium parvum [TaxId: 5807]

Probab=99.94  E-value=3.7e-27  Score=175.53  Aligned_cols=100  Identities=21%  Similarity=0.263  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC-
Q psy6110           9 PQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF-   87 (174)
Q Consensus         9 ~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~-   87 (174)
                      .++||++||++||++|+++|+.|++||.++|.|+|        +++.+.|.++|.++|.+|+++.++++|.++||||+. 
T Consensus         1 ~e~vg~~Fv~~YY~~~~~~r~~l~~~Y~~~s~l~~--------~g~~~~G~~~I~~~l~~l~~~~~~~~i~~~D~Qp~~~   72 (117)
T d1zo2a1           1 FDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTW--------EDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPN   72 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHHCCSCEEEEEEEEEEEECTB
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHhhccCCcEEEE--------CCCcccCHHHHHHHHHhCCCccceEEEeeEEEEEcCC
Confidence            47899999999999999999999999999999976        778899999999999999999999999999999998 


Q ss_pred             -CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110          88 -PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR  133 (174)
Q Consensus        88 -GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (174)
                       ||||+|+|+++.++++                 ++.|.|+|+|+|.
T Consensus        73 ~~ili~V~G~~~~~~~~-----------------~~~F~q~F~L~~~  102 (117)
T d1zo2a1          73 NGSIVFVTGDVRIDDGQ-----------------PLKFSQVFNLMPS  102 (117)
T ss_dssp             SSEEEEEEEEEEETTCC-----------------CEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEeCCCC-----------------cceeEEEEEEeEc
Confidence             7999999999986542                 4779999999875

>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-related export protein 1 (p15)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.4e-25  Score=168.00  Aligned_cols=99  Identities=19%  Similarity=0.223  Sum_probs=89.3

Q ss_pred             CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC
Q psy6110           8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF   87 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~   87 (174)
                      ++..+|++||++||++|+++|+.|++||.++|.|+|        +|+.+.|.++|.++|.+|++.  +|+|.++|||++.
T Consensus        11 ~a~~~a~~FV~~YY~~l~~~r~~L~~fY~~~S~l~~--------~g~~~~G~~~I~~~l~~lp~~--~~~i~~~D~q~~~   80 (139)
T d1jkga_          11 QACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVW--------NGNAVSGQESLSEFFEMLPSS--EFQISVVDCQPVH   80 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEE--------TTEEEESHHHHHHHHHHSCCE--EEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHHhCCCceEEE--------CCeeccCHHHHHHHHHhCCCc--eeEEEEEEEEEcC
Confidence            466799999999999999999999999999999987        677899999999999999965  8999999999874


Q ss_pred             --------CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110          88 --------PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR  133 (174)
Q Consensus        88 --------GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (174)
                              ||||+|+|+|+.++++                 +|-|.|+|+|+|.
T Consensus        81 ~~~~~~~~~ilI~V~G~v~~~~~~-----------------~r~F~QtF~L~~~  117 (139)
T d1jkga_          81 DEATPSQTTVLVVICGSVKFEGNK-----------------QRDFNQNFILTAQ  117 (139)
T ss_dssp             TTTSTTCCEEEEEEEEEEEETTSC-----------------CEEEEEEEEEEEE
T ss_pred             cccccCCCeEEEEEEEEEEcCCCC-----------------cceeEEEEEEEec
Confidence                    6999999999987643                 5779999999984

>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: UBP3-associated protein BRE5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1e-23  Score=158.89  Aligned_cols=109  Identities=18%  Similarity=0.233  Sum_probs=94.1

Q ss_pred             CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCC-------CCcCccccccHHHHHHHHHhCC--CCcccEEE
Q psy6110           8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDA-------PNRETKQVVGQEQIHEHIQQLN--FRDCHAKI   78 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~-------~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I   78 (174)
                      ++++||++||++||+.|+++|+.|++||+++|.|+|.+.++       .......+.|+++|.+++.+|+  +.+++++|
T Consensus         2 t~e~ig~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~s~~~~~~~~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~~~i   81 (139)
T d2qiya1           2 TVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKL   81 (139)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHhhcCCcEEEEcCCCcccccccchhhhhhccccHHHHHHHHHhcCccccceEEee
Confidence            68999999999999999999999999999999999976432       1233467889999999999998  56899999


Q ss_pred             eeeccccCC----CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCC
Q psy6110          79 RQVPVTQQF----PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPR  133 (174)
Q Consensus        79 ~SiDaQpS~----GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (174)
                      .++|+|++.    +|+|+|+|.++.++++                 .|-|.|||+|+|.
T Consensus        82 ~~~d~~~~~~~~~~i~v~V~G~~~~~~~~-----------------~r~F~qtFvL~p~  123 (139)
T d2qiya1          82 DTIDFQYTGHLHKSILIMATGEMFWTGTP-----------------VYKFCQTFILLPS  123 (139)
T ss_dssp             EEEEEEEESGGGCEEEEEEEEEEEETTCC-----------------CEEEEEEEEEEEC
T ss_pred             eeeeeeecccCCCEEEEEEeeEEecCCCC-----------------ccceEEEEEEEec
Confidence            999999975    6999999999876542                 4779999999885

>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: mRNA transport regulator MTR2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=8.7e-14  Score=110.09  Aligned_cols=90  Identities=10%  Similarity=0.084  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHhhcc----CchhHhhcccc-CCceeecCCCCCCcCccccccHHHHHHHHH-hCCCCcccEEEeeecc
Q psy6110          10 QCVGREFVRQYYTLLNQ----APAHLHRFYSE-NSLFIHGGLDAPNRETKQVVGQEQIHEHIQ-QLNFRDCHAKIRQVPV   83 (174)
Q Consensus        10 ~~VG~~FV~qYYt~L~~----~p~~L~rFY~~-~S~lv~gg~d~~t~eg~~~~G~e~I~eki~-sL~f~~~k~~I~SiDa   83 (174)
                      .+||+.||++||..||.    .+.+|..||.+ .|.++|        +|+++.|..++.+++. .|+  .++|+|.++||
T Consensus         3 ~qi~~~FvK~~ya~LD~~dpn~~~ql~~ly~p~~S~Iv~--------NGnpvag~~~~lekf~~~lP--~T~H~l~s~Dc   72 (165)
T d1of5b_           3 AQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIF--------NATPFAQATVFLQMWQNQVV--QTQHALTGVDY   72 (165)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEE--------TTEEESCHHHHHHHHHHHSC--CCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhcccChhHHHHHHhhcCCCCceEEE--------CCCCcCcHHHHHHHHHhcCC--CeeEEEEEEee
Confidence            57999999999999994    46678888886 677765        8999999999877665 577  77999999999


Q ss_pred             ccCC---CcEEEEEeeecCCCCCCCCCCCC
Q psy6110          84 TQQF---PTVKQVEESLPPVTQPPSPPADP  110 (174)
Q Consensus        84 QpS~---GILI~VtG~ls~~~~p~~~~~~~  110 (174)
                      |+++   ++||.|+|++++|+. -+.++-.
T Consensus        73 qpIpG~gT~vi~~sgkVrfDes-gr~k~G~  101 (165)
T d1of5b_          73 HAIPGSGTLICNVNCKVRFDES-GRDKMGQ  101 (165)
T ss_dssp             EEETTTTEEEEEEEEEEECC----------
T ss_pred             eEcCCCcEEEEEEeeEEEECCC-CCCCCCC
Confidence            9998   499999999999765 3444433

>d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor MEX67 {Yeast (Candida albicans) [TaxId: 5476]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-like domain of mRNA export factor MEX67
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=99.06  E-value=1.1e-10  Score=94.57  Aligned_cols=122  Identities=23%  Similarity=0.274  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHhhccCchhHhhccccCCceeecC---C----C----------------CCCcCc-----------cc
Q psy6110          10 QCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGG---L----D----------------APNRET-----------KQ   55 (174)
Q Consensus        10 ~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg---~----d----------------~~t~eg-----------~~   55 (174)
                      +.|+..||++||+.+|++|..|..+|+++|.|+-.=   .    +                ...++-           ..
T Consensus         2 ~~i~~~Fl~~yf~~yDsdR~~Ll~~Y~~~s~FSlsv~~~~p~~~~~~~~~~~~~~~~~~Y~k~SRNL~ki~~~~~r~~~L   81 (205)
T d1q40b_           2 RNLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMAKL   81 (205)
T ss_dssp             HHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHHHTC
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHhcCCCCEEEEEccCCCccccccccccccCCcchhhHhhhcccccccCCHHHHHHHH
Confidence            568999999999999999999999999999987420   0    0                001111           12


Q ss_pred             cccHHHHHHHHHhCCCCcccEEE------eeecccc--CC-CcEEEEEeeecCCCCCCCCCCCCC--------------C
Q psy6110          56 VVGQEQIHEHIQQLNFRDCHAKI------RQVPVTQ--QF-PTVKQVEESLPPVTQPPSPPADPT--------------P  112 (174)
Q Consensus        56 ~~G~e~I~eki~sL~f~~~k~~I------~SiDaQp--S~-GILI~VtG~ls~~~~p~~~~~~~~--------------~  112 (174)
                      ..|.++|.+.|.+||  .++|.+      -+|||..  +. +++|.|.|...=.+.+........              +
T Consensus        82 ~~G~~~Iv~~l~~LP--kT~Hdl~s~~~~f~vD~~~~~~~~~l~itVhG~F~E~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (205)
T d1q40b_          82 SIGQEQIYKSFQQLP--KTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGP  159 (205)
T ss_dssp             EEHHHHHHHHHHTSC--EEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSSSSS
T ss_pred             hhCHHHHHHHHHHCC--CCcccccCCCceEEEEeEecCCCCEEEEEEEeEEEeccCcccccccccccccccccccccccc
Confidence            569999999999999  778876      3688864  33 899999999763222211111100              1


Q ss_pred             CCCCCccccccccccceecCC
Q psy6110         113 PSPPKEDEWKWNEQTPVEAPR  133 (174)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~  133 (174)
                      ...-...+-|.|.-||+++|.
T Consensus       160 ~~~~~~~~~RsF~RTFil~P~  180 (205)
T d1q40b_         160 KHKRIPLSKKSFDRTFVVIPG  180 (205)
T ss_dssp             CCCCCCCCCEEEEEEEEEECC
T ss_pred             ccccccccccceeEEEEEEec
Confidence            111223467999999999885

>d1jkgb_ d.17.4.2 (B:) NTF2-like domain of Tip associating protein, TAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-like domain of Tip associating protein, TAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.4e-09  Score=86.68  Aligned_cols=112  Identities=14%  Similarity=0.172  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecC---CC--C---------CCcCc-----------cccccHHH
Q psy6110           8 SPQCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGG---LD--A---------PNRET-----------KQVVGQEQ   61 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg---~d--~---------~t~eg-----------~~~~G~e~   61 (174)
                      +...+..+|+++||..+|+ +|..|..+|+++|.|+-.=   ..  +         ..++-           .-..|.++
T Consensus        13 ~~~~lv~~Fl~~yf~~yDs~dR~~Ll~~Y~~~a~FSlsv~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~r~~~l~~G~~~   92 (186)
T d1jkgb_          13 NLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLN   92 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcCHHHHHHhcCcccEEEEecCCCCCCCCccchHHHhhhCcCccccCCHHHHHHHHhhCHHH
Confidence            4557999999999999997 8999999999999997420   00  0         01111           12359999


Q ss_pred             HHHHHHhCCCCcccEEEee--ecccc-CC-CcEEEEEeeecCCCCCCCCCCCCCCCCCCCccccccccccceecCCC
Q psy6110          62 IHEHIQQLNFRDCHAKIRQ--VPVTQ-QF-PTVKQVEESLPPVTQPPSPPADPTPPSPPKEDEWKWNEQTPVEAPRS  134 (174)
Q Consensus        62 I~eki~sL~f~~~k~~I~S--iDaQp-S~-GILI~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (174)
                      |.+.|.+||  .++|.+.+  +|... +. +++|.|.|...-.+.             -..+..|.|.-||+++|..
T Consensus        93 Iv~~l~~LP--~T~Hd~~sf~vD~~~~~~~~l~itV~G~F~E~~~-------------~~~~~~rsF~RTFil~P~~  154 (186)
T d1jkgb_          93 VVAFLNELP--KTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDG-------------KSRDSLRAFTRTFIAVPAS  154 (186)
T ss_dssp             HHHHHTTSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEECSS-------------TTTTCEEEEEEEEEEEECT
T ss_pred             HHHHHHHCC--CceecccccceeEeeccCCEEEEEEeeEEEecCC-------------CCCcceeEEEEEEEEeecC
Confidence            999999999  77887764  45432 22 799999999874211             1123589999999999853

>d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor MEX67 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-like domain of mRNA export factor MEX67
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=1.9e-09  Score=88.21  Aligned_cols=125  Identities=15%  Similarity=0.199  Sum_probs=82.7

Q ss_pred             CCCHHHHHHHHHHHHHHhhccCchhHhhccccCCceeec-C-------CC------------CCCc-----------Ccc
Q psy6110           6 TPSPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHG-G-------LD------------APNR-----------ETK   54 (174)
Q Consensus         6 ~ps~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~g-g-------~d------------~~t~-----------eg~   54 (174)
                      ..+...++..|+++||..+|++|..|..+|+++|.|+-. +       ..            ...+           ...
T Consensus         7 ~~~~~~lv~~FL~~Yf~~yDsdR~~Ll~~Y~~~A~FSlsv~~~~p~~~~~~~~~~~~~~~Y~k~SRNL~ki~~~~~r~~~   86 (221)
T d1of5a_           7 NDALGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQR   86 (221)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC-------------------------------------
T ss_pred             CHHHHHHHHHHHHHHHHHhccCHHHHHHhcCcCCEEEEEecCCCCCccccCccCCcchHHHHhhcccccccCCHHHHHHH
Confidence            456678999999999999999999999999999998642 0       00            0011           112


Q ss_pred             ccccHHHHHHHHHhCCCCcccEEEe------eeccccCC---CcEEEEEeeecCCCCCCCCCCC-------C--------
Q psy6110          55 QVVGQEQIHEHIQQLNFRDCHAKIR------QVPVTQQF---PTVKQVEESLPPVTQPPSPPAD-------P--------  110 (174)
Q Consensus        55 ~~~G~e~I~eki~sL~f~~~k~~I~------SiDaQpS~---GILI~VtG~ls~~~~p~~~~~~-------~--------  110 (174)
                      ...|.++|.+.|.+||  .++|.+.      +|||....   |++|.|.|...=-+.+...+-.       +        
T Consensus        87 L~~G~~~Iv~~l~~LP--kT~Hdl~~~p~~f~vd~~~~~~~~~l~itvhG~F~E~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (221)
T d1of5a_          87 LSIGQESINSIFKTLP--KTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHG  164 (221)
T ss_dssp             -CBHHHHHHHHHHHSC--CEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-------------------------
T ss_pred             HhhCHHHHHHHHHHCC--CccccccCCCceEEEEEEEcCCCCEEEEEEeEEEEeccCccccccccccccccccccccccc
Confidence            3469999999999999  7788863      58876543   7899999998643332110000       0        


Q ss_pred             CCCCCCCccccccccccceecC
Q psy6110         111 TPPSPPKEDEWKWNEQTPVEAP  132 (174)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~  132 (174)
                      .....-.--+-|.|.-||+++|
T Consensus       165 ~~~~~~~~~~~RsFdRTFil~P  186 (221)
T d1of5a_         165 YNSTSNNKLSKKSFDRTWVIVP  186 (221)
T ss_dssp             ----CCSCCEEEEEEEEEEEEE
T ss_pred             ccccccccccccceeEEEEEec
Confidence            0001122346799999999987

>d1q42a_ d.17.4.2 (A:) mRNA transport regulator MTR2 {Yeast (Candida albicans) [TaxId: 5476]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: mRNA transport regulator MTR2
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=97.36  E-value=0.00011  Score=57.43  Aligned_cols=93  Identities=9%  Similarity=0.040  Sum_probs=69.3

Q ss_pred             CHHHHHHHHHHHHHHhhcc-CchhHhhcc--------------ccCCceeecCCCCCCcCcccc------ccHHHHHHHH
Q psy6110           8 SPQCVGREFVRQYYTLLNQ-APAHLHRFY--------------SENSLFIHGGLDAPNRETKQV------VGQEQIHEHI   66 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~-~p~~L~rFY--------------~~~S~lv~gg~d~~t~eg~~~------~G~e~I~eki   66 (174)
                      +|-++.+-||++....||. .+..|..|.              ...|.++|        +|+++      .+..+..+++
T Consensus         2 dpsq~~e~F~KkiLa~LD~~~~~~~~q~~~~~~~~~~~~~~~l~~~~kII~--------NgtP~~~~~~~~~~~~Fl~~w   73 (174)
T d1q42a_           2 DPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIV--------NGQPIIPSPQEDCKLQFQKKW   73 (174)
T ss_dssp             CGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEE--------TTEECCCCSSCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccccccchhhHHhHHHHHHHHhcccCCCCCcEEEE--------cCcccccccccccHHHHHHHH
Confidence            5667899999999999994 344444333              34677777        44443      4677889999


Q ss_pred             HhCCCCcccEEEeeeccccCC---CcEEEEEeeecCCCCCCCCCCCCC
Q psy6110          67 QQLNFRDCHAKIRQVPVTQQF---PTVKQVEESLPPVTQPPSPPADPT  111 (174)
Q Consensus        67 ~sL~f~~~k~~I~SiDaQpS~---GILI~VtG~ls~~~~p~~~~~~~~  111 (174)
                      .+.+.  ++|.++++||+.++   +++|.|+|.+.+|+. -+.++-++
T Consensus        74 ~qvp~--TqH~Lts~D~H~IPGtgt~i~nv~~KVRFDEs-Grdk~Gq~  118 (174)
T d1q42a_          74 LQTPL--SSHQLTSYDGHLIPGTGTFVVHFSAKVRFDQS-GRNRLGES  118 (174)
T ss_dssp             HTSCC--EEEEEEEEEEEEETTTTEEEEEEEEEEEEBCS-SCCTTSCC
T ss_pred             Hhccc--eeeeeeeeeeeeeCCCceEEEEeeeEEEecCc-CCCcCCCc
Confidence            99995  49999999999998   599999999998654 34444444

>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092 {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rpa4348-like
domain: Uncharacterized protein BxeB2092
species: Burkholderia xenovorans [TaxId: 36873]

Probab=95.36  E-value=0.048  Score=37.88  Aligned_cols=67  Identities=9%  Similarity=0.108  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeecc
Q psy6110          11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPV   83 (174)
Q Consensus        11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDa   83 (174)
                      +--+++|++||..+++ +.+.+..||.++..+.+.      ..+..+.|.++|.+.+..++-....+.+..+.+
T Consensus         4 e~~~~~v~~~~~A~~~gD~da~~~l~adD~v~~~p------~~~~~~~G~e~i~~~~~~~~~~~~~~~~~~~~~   71 (127)
T d3en8a1           4 EKIREALNAHWQASAAGDFDAEHDIYDDDAICDYP------QSGERILGRMNLQALRSHHPGKPAGFEVRRIQG   71 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEET------TTTEEEESHHHHHHHHHHTTCSCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhcCCEEEEcC------CcccccchHHHHHHHHHHHhccCccceeEEEec
Confidence            3457899999999995 699999999999998653      235578999999999988763334455554433

>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Orange carotenoid protein, C-terminal domain
domain: Orange carotenoid protein, C-terminal domain
species: Cyanobacteria (Arthrospira maxima) [TaxId: 129910]

Probab=94.45  E-value=0.048  Score=40.39  Aligned_cols=80  Identities=18%  Similarity=0.138  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC--C
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF--P   88 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~--G   88 (174)
                      |.+.=|+.||..|+. +.+.+..+|.++..+.-      -+ +..+.|.++|.+.+...- .+.+..-.........  +
T Consensus        20 i~~~~V~~Y~~a~na~D~d~~~~lFa~Dav~~~------P~-~~p~~G~eaI~~f~~~~~-~~~~~~p~~g~~~~~~~g~   91 (142)
T d1m98a2          20 VTNSTVLQYMDNLNANDFDNLISLFAEDGALQP------PF-QKPIVGKENTLRFFREEC-QNLKLIPERGVSEPTEDGY   91 (142)
T ss_dssp             BCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC------TT-SCCEESHHHHHHHHHHHC-TTCEEEEEEEEEEECGGGC
T ss_pred             ccHHHHHHHHHHHhcCCHHHHHHHcCCCeEEeC------CC-CccccCHHHHHHHHHHhc-ccceecccceeeEeecCCc
Confidence            445559999999985 69999999999998742      12 457899999999998531 1112211111111122  5


Q ss_pred             cEEEEEeeecC
Q psy6110          89 TVKQVEESLPP   99 (174)
Q Consensus        89 ILI~VtG~ls~   99 (174)
                      ..+.|+|.++.
T Consensus        92 ~~v~vtgkV~~  102 (142)
T d1m98a2          92 TQIKVTGKVQT  102 (142)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEec
Confidence            89999999864

>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Hypothetical protein BxeB1374
species: Burkholderia xenovorans [TaxId: 36873]

Probab=94.21  E-value=0.017  Score=40.13  Aligned_cols=57  Identities=14%  Similarity=0.127  Sum_probs=41.9

Q ss_pred             CHHHHHHHHHHHHHHhhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110           8 SPQCVGREFVRQYYTLLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN   70 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~   70 (174)
                      ..++|-..|-++|--.-..+.+.|..+|.++..+++-+      .+....|.++|.+.+....
T Consensus         8 ~~a~I~a~~~~~~~A~~~~D~~~l~~l~a~d~~~v~~~------~~~~~~g~~~i~~~~~~~~   64 (128)
T d2owpa1           8 IVAQVQAAFVEYERALVENDIEAMNALFWHTPETVRYG------IAEVQHGGEAIRAWRERCE   64 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEEC------SSCEEESHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhccCCcEEEee------ccceecchhHHHHHHHHhh
Confidence            44567777755555555578999999999998887632      3345789999999888663

>d3dm8a1 d.17.4.20 (A:1-135) Uncharacterized protein Rpa4348 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rpa4348-like
domain: Uncharacterized protein Rpa4348
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.08  E-value=0.05  Score=37.54  Aligned_cols=72  Identities=17%  Similarity=0.049  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeeeccc
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQVPVT   84 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~SiDaQ   84 (174)
                      -+.|++.+|..|++ +.+.|..++.++..+...+..+..--+....|.++|.+.+.++.  +...++++..+-+.
T Consensus         6 ~~~~~~~~y~A~~~~d~d~~~~l~~~D~~~~~~g~~~~~P~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T d3dm8a1           6 LWRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVRIYRYHRESVMLG   80 (135)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHhcCcceEEEccccccccccccccccchhhhhhhhhccccccceeeeeeeEEec
Confidence            36789999999995 68999999999998865432110011236789999999998763  34455566555443

>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Uncharacterized protein ECA3500
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=93.28  E-value=0.089  Score=35.82  Aligned_cols=54  Identities=19%  Similarity=0.205  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHH-hhccCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110           9 PQCVGREFVRQYYT-LLNQAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus         9 ~~~VG~~FV~qYYt-~L~~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      .++|...| ++|++ ....+.+.|..+|.++..+++.+      .+....|.++|.+.+...
T Consensus        12 ~aeI~a~~-~~~~~A~~~~D~~~l~~l~a~D~~~~~~~------~~~~~~g~~~~~~~~~~~   66 (127)
T d2rcda1          12 LADVTAAF-YRYEKALTGNDVAVLDELFWHDEKTVRYG------AGENLYGIEEIRAFRLAR   66 (127)
T ss_dssp             HHHHHHHH-HHHHHHHHTTCHHHHHHHBCCSTTCEEEE------TTEEEESHHHHHHHHHHS
T ss_pred             HHHHHHHH-HHHHHHHHcCCHHHHHHhhcCCCcEEEeC------CCcccccHHHHHHHHHhc
Confidence            34576666 55555 45568999999999999888732      334678999999888754

>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI
species: Pseudomonas putida [TaxId: 303]

Probab=93.03  E-value=0.13  Score=34.50  Aligned_cols=56  Identities=20%  Similarity=0.328  Sum_probs=43.1

Q ss_pred             CCHHHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110           7 PSPQCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus         7 ps~~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      |+++++ ++.|+.||..+++ +.+.|..+|.++..+.-      ...+....|.++|.+.+..+
T Consensus         2 pt~e~~-~~~v~~y~~a~~~~D~d~~~~l~~~d~~~~~------p~~~~~~~G~~~i~~~~~~~   58 (125)
T d1oh0a_           2 PTAQEV-QGLMARYIELVDVGDIEAIVQMYADDATVED------PFGQPPIHGREQIAAFYRQG   58 (125)
T ss_dssp             CCHHHH-HHHHHHHHHHHHHTCHHHHHHHEEEEEEEES------STTSCCEEHHHHHHHHHHHH
T ss_pred             CCHHHH-HHHHHHHHHHHHcCCHHHHHHHhCCCEEEEC------CCCCcccccHHHHHHHHHHH
Confidence            456644 5689999999995 69999999999988742      12234689999999998753

>d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein NpunR1993
species: Nostoc punctiforme [TaxId: 272131]

Probab=92.38  E-value=0.07  Score=38.25  Aligned_cols=106  Identities=18%  Similarity=0.128  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC---CCCcccEEEeeeccccCC
Q psy6110          12 VGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL---NFRDCHAKIRQVPVTQQF   87 (174)
Q Consensus        12 VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL---~f~~~k~~I~SiDaQpS~   87 (174)
                      -=++++++|...+++ +.+.+..+|.++..+..       ..+..+.|.++|.+.+...   .+....+.+...+.+...
T Consensus         8 aI~al~~~~~~A~~~~D~d~~~~l~a~D~~~~~-------~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~   80 (162)
T d3cu3a1           8 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFIT-------FEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVN   80 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC-------TTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHhhccCeeeec-------ccccccCCHHHHHHHHHHHHhhcccceeEEeeceEEEEec
Confidence            346778899988885 68999999999988753       3455788999998887642   233445454444443222


Q ss_pred             --CcEEEEEeeecCCCCCCCCC---CCCCCCCCCCccccccc
Q psy6110          88 --PTVKQVEESLPPVTQPPSPP---ADPTPPSPPKEDEWKWN  124 (174)
Q Consensus        88 --GILI~VtG~ls~~~~p~~~~---~~~~~~~~~~~~~~~~~  124 (174)
                        ..++.....+...+.....+   .-.+.+..=.+|+||.-
T Consensus        81 ~d~Avv~~~~~~~~~~~~~~~~~~~~r~t~Vl~K~dG~WrIa  122 (162)
T d3cu3a1          81 SQLALMLVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIE  122 (162)
T ss_dssp             TTEEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEE
T ss_pred             CCEEEEEEEEEEeecCCCCCCcceeEEEEEEEEEECCEEEEE
Confidence              24444444454433322111   22334455678999983

>d3dmca1 d.17.4.10 (A:1-133) Uncharacterized protein Ava2261 {Anabaena variabilis [TaxId: 1172]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein Ava2261
species: Anabaena variabilis [TaxId: 1172]

Probab=91.47  E-value=0.41  Score=32.93  Aligned_cols=90  Identities=11%  Similarity=0.016  Sum_probs=59.6

Q ss_pred             CHHHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC----CCCcccEEEeeec
Q psy6110           8 SPQCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL----NFRDCHAKIRQVP   82 (174)
Q Consensus         8 s~~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL----~f~~~k~~I~SiD   82 (174)
                      ....+++++++.|++.+.+ +.+.+..++.++..+...+.   .+ .....|.+++.+.+..+    +......++..+-
T Consensus         8 ~~~~~a~~~~e~f~~a~~~gD~d~~~~l~~~D~~~~~p~~---~~-~g~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
T d3dmca1           8 NTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMG---EF-HGLNVGKERAKEFFTYVSESFHTGIQISSLDRVT   83 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSG---GG-BEEEESHHHHHHHHHHHHHTCTTCEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHHHHHHHhccceEEEecCC---Cc-ccchhhHHHHHHHhhhcccccccccceeeEEEEe
Confidence            3457999999999999885 79999999999988754321   12 22568999998877644    3222566666665


Q ss_pred             cccCCCcEEEEEeeecCCCC
Q psy6110          83 VTQQFPTVKQVEESLPPVTQ  102 (174)
Q Consensus        83 aQpS~GILI~VtG~ls~~~~  102 (174)
                      +... .|++..++....+|.
T Consensus        84 ~~g~-~vvve~~~~~~~~G~  102 (133)
T d3dmca1          84 SNET-TVVFEFRDEGLFLGK  102 (133)
T ss_dssp             ECSS-EEEEEEEEEEEETTE
T ss_pred             cCCC-EEEEEEEEEEeecce
Confidence            5432 255555554444443

>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Atu0744-like
domain: Uncharacterized protein Atu0744
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.67  E-value=0.29  Score=32.98  Aligned_cols=63  Identities=17%  Similarity=0.228  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhhccC-----chhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEe-eeccc
Q psy6110          14 REFVRQYYTLLNQA-----PAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIR-QVPVT   84 (174)
Q Consensus        14 ~~FV~qYYt~L~~~-----p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~-SiDaQ   84 (174)
                      ..++++|...+++.     .+.|..+|.++..+.    |    ......|.++|.+.+..+  .|.+.++++. .+++.
T Consensus         5 ~~~~~~y~~awn~~d~~~~~~~l~~~~a~d~~~~----d----P~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~v~~~   75 (117)
T d3dxoa1           5 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYV----D----PLMQGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGH   75 (117)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEE----C----SSCEEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhccCchhhHHHHHHHccCCEEEE----C----CCCCcccHHHHHHHHHHHHHhCCCcEEEEEEEEecC
Confidence            45689999999854     355999999999885    1    334688999999998854  4556777754 56554

>d2bnga1 d.17.4.8 (A:13-144) Uncharacterized protein Mb2760 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Limonene-1,2-epoxide hydrolase-like
domain: Uncharacterized protein Mb2760
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.64  E-value=0.24  Score=33.97  Aligned_cols=51  Identities=6%  Similarity=0.158  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN   70 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~   70 (174)
                      ..+.|++||..|++ +.+.+..+|.++..+.-       -......|.++|.+.+..+.
T Consensus         5 ~~~~V~~f~~A~~~~D~d~~~~~~a~D~v~~~-------~~~~~~~G~~~~~~~~~~~~   56 (132)
T d2bnga1           5 AIRAVEAFLNALQNEDFDTVDAALGDDLVYEN-------VGFSRIRGGRRTATLLRRMQ   56 (132)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEE-------TTTEEEECHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHhccchheec-------cccCCcchHHHHHHHHHhcc
Confidence            45789999999985 69999999999886432       12346789999999998653

>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein SO0125
species: Shewanella oneidensis [TaxId: 70863]

Probab=90.53  E-value=0.11  Score=34.73  Aligned_cols=82  Identities=9%  Similarity=-0.084  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC---CCcccEEEeeeccccCCCc
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN---FRDCHAKIRQVPVTQQFPT   89 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~---f~~~k~~I~SiDaQpS~GI   89 (174)
                      .+-++.|-.-+++ +.+.+..+|.++..++..      ..+....|.++|.+.+..+-   +...+..+..++.....+-
T Consensus         7 ~~~i~~~~~A~~~gD~d~~~~~~~~d~~~~~~------~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d   80 (121)
T d3b7ca1           7 VQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLI------SNGKFRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNY   80 (121)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEE------CSSCEEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEETT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhccCcceEe------cCCcceecHHHHHHHHHHhhcccccccEEEEeeEEEEEcCCC
Confidence            4557888888885 699999999999988752      24557899999999876531   2233444444433322223


Q ss_pred             EEEEEeeecCCC
Q psy6110          90 VKQVEESLPPVT  101 (174)
Q Consensus        90 LI~VtG~ls~~~  101 (174)
                      +..|.|....++
T Consensus        81 ~a~~~~~~~~~~   92 (121)
T d3b7ca1          81 AAMVVGRWDLKR   92 (121)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEEcc
Confidence            344555544433

>d1z1sa1 d.17.4.10 (A:1-129) Uncharacterized protein PA3332 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein PA3332
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.51  E-value=0.1  Score=34.95  Aligned_cols=55  Identities=13%  Similarity=0.197  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      .++-|++||..|.+ +.+.+..+|.++..+.....+  ...+....|.++|.+.+..+
T Consensus         3 ~~eiv~~~~~~~~~gD~~~~~~l~a~D~v~~~p~~~--~~~~~~~~G~~~i~~~~~~~   58 (129)
T d1z1sa1           3 AKEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAP--PGWKTRFEGRETIWAHMRLF   58 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCC--TTSCCEEESHHHHHHTTTTG
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhcCceEEEEecCC--cccceEEeCHHHHHHHHHhh
Confidence            35678999999985 689999999999876543211  12345689999999988765

>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI
species: Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]

Probab=89.42  E-value=0.15  Score=33.77  Aligned_cols=52  Identities=13%  Similarity=0.187  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN   70 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~   70 (174)
                      -++.|++||..+++ +.+.|..+|.++..+..      ...+....|.++|.+.+..+.
T Consensus         7 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~------p~~~~~~~G~~~i~~~~~~~~   59 (125)
T d1ohpa1           7 MTAVVQRYVAALNAGDLDGIVALFADDATVEN------PVGSEPRSGTAAIREFYANSL   59 (125)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHTTEEEEEEEES------STTSCCEESHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhCCceEEec------CccCcccccHHHHHHHHHHHh
Confidence            56789999999995 69999999999988753      123456899999999988653

>d1nwwa_ d.17.4.8 (A:) Limonene-1,2-epoxide hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Limonene-1,2-epoxide hydrolase-like
domain: Limonene-1,2-epoxide hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=89.18  E-value=0.24  Score=34.48  Aligned_cols=64  Identities=11%  Similarity=0.266  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeee
Q psy6110          11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQV   81 (174)
Q Consensus        11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~Si   81 (174)
                      .--++.|+.||..|++ +.+.|..+|.++..+.-       ..+....|.++|.+.+..+-  +.+.+++|..+
T Consensus        18 ~~~~~lv~~~~~A~~~~D~~~~~~~~~~D~~~~~-------~~~~~~~G~e~~~~~~~~~~~~~~~~~~~i~~~   84 (145)
T d1nwwa_          18 TPDEKIVLEFMDALTSNDAAKLIEYFAEDTMYQN-------MPLPPAYGRDAVEQTLAGLFTVMSIDAVETFHI   84 (145)
T ss_dssp             SHHHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEE-------TTSCCEESHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHhccceEec-------CCcccccCHHHHHHHHHhhhhhcccccceEEEE
Confidence            3456889999999996 48999999999997642       12335789999999888642  33455555544

>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: YybH-like
domain: Hypothetical protein YybH
species: Bacillus subtilis [TaxId: 1423]

Probab=87.88  E-value=0.88  Score=30.56  Aligned_cols=50  Identities=14%  Similarity=0.298  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      =++++++|...+++ +.+.|..+|.+++.++.       ..|....|.++|.+.+..+
T Consensus         5 I~~l~~~~~~A~~~~D~d~~~~l~~~Da~~~~-------~~g~~~~G~e~i~~~~~~~   55 (128)
T d2gxfa1           5 LKDIISACDLAIQNEDFDTLMNYYSEDAVLVV-------KPGMIARGKEEIKKAFITI   55 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHTTSEEEEEEEEC-------SSSCEEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhccCCcEec-------CCCcceeehHHHHHHHHHH
Confidence            35677888888885 69999999999988763       2456788999999988754

>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SAV4671-like
domain: Uncharacterized protein SAV4671
species: Streptomyces avermitilis [TaxId: 33903]

Probab=87.88  E-value=0.56  Score=33.03  Aligned_cols=78  Identities=10%  Similarity=0.055  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCC-------CC---CCcCccccccHHHHHHHHHhC--CCCccc
Q psy6110           9 PQCVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGL-------DA---PNRETKQVVGQEQIHEHIQQL--NFRDCH   75 (174)
Q Consensus         9 ~~~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~-------d~---~t~eg~~~~G~e~I~eki~sL--~f~~~k   75 (174)
                      .++|... .+.||..|++ +-+.|.++|.++..+...+.       |.   ..--+....|.++|.+.+..+  ......
T Consensus         6 ~~~v~aa-~~af~~A~~~~D~~a~~~~w~~d~~~~~~~~~~~~~~~d~v~~~hpg~~~l~G~~ai~~~~~~~~~~~~~~~   84 (153)
T d3cnxa1           6 VEQVGLA-NTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVLSGRGEVLRSYALIMANTEYIQ   84 (153)
T ss_dssp             HHHHHHH-HHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTCCEEEHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHH-HHHHHHHHHcCCHHHHHHhhcccccccccccccccccccceeeecCCCccccCHHHHHHHHHHHhcccCccc
Confidence            3456666 7889999986 78999999987654432110       00   001345789999999988753  123445


Q ss_pred             EEEeeeccccCC
Q psy6110          76 AKIRQVPVTQQF   87 (174)
Q Consensus        76 ~~I~SiDaQpS~   87 (174)
                      +++..+...-+.
T Consensus        85 ~~~~~~~v~v~g   96 (153)
T d3cnxa1          85 FFLTDVHVSVTG   96 (153)
T ss_dssp             EEEEEEEEEEET
T ss_pred             ceEEEeEEEEeC
Confidence            666666655443

>d3ebta1 d.17.4.9 (A:1-131) Uncharacterized protein BPSS0132 {Burkholderia pseudomallei [TaxId: 28450]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Uncharacterized protein BPSS0132
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=86.59  E-value=0.49  Score=31.55  Aligned_cols=68  Identities=10%  Similarity=0.140  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCC--CCcccEEEeee
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLN--FRDCHAKIRQV   81 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~--f~~~k~~I~Si   81 (174)
                      .+-|++||..+++ +.+.|..+|.++-.+.+.+.......+....|.++|.+.+..+.  +....+++..+
T Consensus         5 ~~~v~~~~~a~~~~D~~~~~~~~a~D~~~~~~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~   75 (131)
T d3ebta1           5 MQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHIAEMRLAPDEF   75 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhCcceEEEEcCCCcccCccccccchHHHHHhhhhhccccCcceeeEEEE
Confidence            4679999999986 58999999999988766421000112346899999999998774  23334444433

>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Hypothetical protein YesE
species: Bacillus subtilis [TaxId: 1423]

Probab=86.23  E-value=0.59  Score=31.55  Aligned_cols=57  Identities=16%  Similarity=0.250  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110          11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      +-..+=|++||..+.+ +.+.+..+|.++..+...+.+  ...+....|.++|.+.+..+
T Consensus         5 ~~~~e~v~~~~~a~~~~D~~~~~~l~~eD~v~~~p~~~--~~~~~~~~G~~~i~~~~~~~   62 (139)
T d1s5aa_           5 EKACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAP--EGSPKRIEGKAAIYDYIKDY   62 (139)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCC--TTSCSEEESHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhCCceEEEEccCC--ccccceecchHHHHHhhhhc
Confidence            4567778999988875 689999999999887543221  23445789999999988765

>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.74  E-value=0.07  Score=35.25  Aligned_cols=108  Identities=8%  Similarity=0.021  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHhhc-cCchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhCCCCcccEEEeeeccccCC-
Q psy6110          10 QCVGREFVRQYYTLLN-QAPAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQLNFRDCHAKIRQVPVTQQF-   87 (174)
Q Consensus        10 ~~VG~~FV~qYYt~L~-~~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL~f~~~k~~I~SiDaQpS~-   87 (174)
                      ++|- +-.++|+..++ .+.+.+.++|.++..+++.+     ..+....|.+.|...+....+......+......... 
T Consensus         9 ~eI~-~~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~   82 (129)
T d2f86b1           9 QDIV-RVTQTLLDAISCKDFETYTRLCDTSMTCFEPE-----ALGNLIEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGE   82 (129)
T ss_dssp             HHHH-HHHHHHHHHHHHTCHHHHHHHEEEEEEEECGG-----GTTCCEETTHHHHTTSSSCSCCSCEEEEEEEEEEEETT
T ss_pred             HHHH-HHHHHHHHHHHcCCHHHHHHhhcCCceEEEec-----CCCceeehHHHHHHHHhhcccccccceeccceeEEcCC
Confidence            3454 44566666665 67999999999988876532     2344567888887777666655444444333222222 


Q ss_pred             CcEE----EEEeeecCCCCCCCCCCCCCCCCCCCcccccc
Q psy6110          88 PTVK----QVEESLPPVTQPPSPPADPTPPSPPKEDEWKW  123 (174)
Q Consensus        88 GILI----~VtG~ls~~~~p~~~~~~~~~~~~~~~~~~~~  123 (174)
                      .+.|    .+.+....++.+..-..-.+.+..=.+|+||+
T Consensus        83 ~~av~~~~~~~~~~~~~g~~~~~~~r~T~V~~k~~g~Wki  122 (129)
T d2f86b1          83 DAACVAYVKLTQFLDRNGEAHTRQSQESRVWSKKQGRWVC  122 (129)
T ss_dssp             TEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEE
T ss_pred             hheeEEEEEEEEEeccCCCcccccEEEEEEEEEECCEEEE
Confidence            2221    22333444444333223334555555667765

>d2geya1 d.17.4.9 (A:2-145) Putative hydroxylase AclR {Streptomyces galilaeus [TaxId: 33899]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Putative hydroxylase AclR
species: Streptomyces galilaeus [TaxId: 33899]

Probab=83.96  E-value=1  Score=31.06  Aligned_cols=64  Identities=9%  Similarity=0.194  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeecccc
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPVTQ   85 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDaQp   85 (174)
                      .++++++||..+++ +.+.|..||.++..+ |.       ++ ...|.+++.+.+..+  .|.+.++++..+-+..
T Consensus         5 ~~~l~~~~~~A~n~~D~~~~~~~~a~d~v~-~~-------~~-~~~G~~~~~~~~~~~~~~~pd~~~~~~~~~~~g   71 (144)
T d2geya1           5 RKALCLEMVAAWNRWDLSGIIKHWSPDIVH-YS-------ED-NEVSSADMVKLMEGGLKAFPDLQLEVKSIMAEE   71 (144)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHTTEEEEEEE-EE-------TT-EEECHHHHHHHHHHHHHHSTTCEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhCccccc-cc-------CC-cccCHHHHHHHHHHHHHhcccccceeeeEEecc
Confidence            46889999999996 589999999998543 21       22 235888888877643  2446778877665543

>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: ECA1476-like
domain: Uncharacterized protein ECA1476
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=82.71  E-value=0.73  Score=30.59  Aligned_cols=52  Identities=15%  Similarity=0.259  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC
Q psy6110          11 CVGREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        11 ~VG~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      +.=++.+++|+..|++ +.+.+..+|.++..++..       .+....|.++|.+.+..+
T Consensus         8 ~aI~~~~~~y~~A~~~~D~~~~~~l~t~Dav~~~~-------~~~~~~G~~~i~~~~~~~   60 (132)
T d3d9ra1           8 AVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGP-------GRPAAVGKDELAEVYLSV   60 (132)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECT-------TSCCEESHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEcc-------CCcceehHHHHHHHHHHH
Confidence            3446778899999986 699999999999998642       344678999999988763

>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL {Streptomyces nogalater [TaxId: 38314]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SnoaL-like polyketide cyclase
domain: Nogalamycin biosynthesis protein SnoL
species: Streptomyces nogalater [TaxId: 38314]

Probab=82.61  E-value=1.2  Score=30.23  Aligned_cols=62  Identities=11%  Similarity=0.218  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC--CCCcccEEEeeecc
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL--NFRDCHAKIRQVPV   83 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL--~f~~~k~~I~SiDa   83 (174)
                      ++=|++||..+++ +.+.|.+||.++..+.-        .+....|.+++.+.+..+  .|.+.+.+|..+=+
T Consensus         6 ~e~~~~~~~a~~~~D~~~~~~~~a~D~~~~~--------~~~~~~G~~~~~~~~~~~~~~~~d~~~~~~~~~~   70 (138)
T d2gexa1           6 KERCLEMVAAWNRWDVSGVVAHWAPDVVHYD--------DEDKPVSAEEVVRRMNSAVEAFPDLRLDVRSIVG   70 (138)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC--------TTSCEECHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHccCHHHHHHHhCccccccC--------CCCCccCHHHHHHHHHHHHHhccCceeeeeeeee
Confidence            4557889999985 69999999999876532        223456999998887754  35577777776544

>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Uncharacterized protein BTHI0051
species: Burkholderia thailandensis [TaxId: 57975]

Probab=82.60  E-value=0.92  Score=29.95  Aligned_cols=67  Identities=9%  Similarity=0.091  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHH-HHHHHHhC--CCCcccEEEeeec
Q psy6110          13 GREFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQ-IHEHIQQL--NFRDCHAKIRQVP   82 (174)
Q Consensus        13 G~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~-I~eki~sL--~f~~~k~~I~SiD   82 (174)
                      ..+.|+.||..+++ +.+.+..++.++..+...+-   ...+....|.++ |...+..+  .+...++++..+-
T Consensus         4 ~~~iv~~~~~A~~~~D~d~~~~~~a~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (130)
T d3ec9a1           4 PYQIVADHYAASDRHDPAAMMADIAPAIEWTEMAG---FPCAGTYRSADEIVRNVFRRLGEEWDGYTFKLDALH   74 (130)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTT---STTCEEECSHHHHHHHTHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHhcCcccEEEecCC---ceecccEEcchhHHhHHhhhhhcccccceeeeEEEE
Confidence            46789999999985 69999999999987754221   112223455555 44444433  2334445554443

>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Ketosteroid isomerase-like
domain: Hypothetical protein Rv0760c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.52  E-value=0.99  Score=29.79  Aligned_cols=56  Identities=5%  Similarity=0.039  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCC-CCCcCccccccHHHHHHHHHhC
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLD-APNRETKQVVGQEQIHEHIQQL   69 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d-~~t~eg~~~~G~e~I~eki~sL   69 (174)
                      .++++.||+.+++ +.+.+..+|.++..+.....+ .....+....|.++|.+.+..+
T Consensus         6 ~~~~~~~~~a~~~~D~~~~~~l~a~D~~~~~P~~~~~~~~~~~~~~G~~ai~~~~~~~   63 (132)
T d2a15a1           6 LIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTH   63 (132)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHcCCCeEEEccCCccccCccchheehHHHHHHhhhhh
Confidence            5689999999996 599999999999887643211 1223445688999999888764

>d2k54a1 d.17.4.29 (A:1-123) Uncharacterized protein Atu0742 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Atu0742-like
domain: Uncharacterized protein Atu0742
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.47  E-value=1  Score=30.28  Aligned_cols=62  Identities=8%  Similarity=0.003  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhhcc-CchhHhhccccCCceeecCCCCCCcCccccccHHHHHHHHHhC-CCCcccEEEeee
Q psy6110          14 REFVRQYYTLLNQ-APAHLHRFYSENSLFIHGGLDAPNRETKQVVGQEQIHEHIQQL-NFRDCHAKIRQV   81 (174)
Q Consensus        14 ~~FV~qYYt~L~~-~p~~L~rFY~~~S~lv~gg~d~~t~eg~~~~G~e~I~eki~sL-~f~~~k~~I~Si   81 (174)
                      +.=|++||..|++ +.+.+..+|.++..+...      ..+....|.++|.+.+..+ ...+.+.++..+
T Consensus         6 ~~~V~~~~~A~~~~D~e~~~~~~aeD~~~~~~------~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~   69 (123)
T d2k54a1           6 ELPVQKQLEAYNARDIDAFMAWWADDCQYYAF------PATLLAGNAAEIRVRHIERFKEPDLYGELLTR   69 (123)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHTEEEEEEEEET------TTEEEEESHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCHHHHHHhcCCCeEEEcC------CCcceechHHHHHHHHHhhhccccceeeeEEE
Confidence            4569999999996 689999999999876432      2445678999998887654 222444554443