Psyllid ID: psy6206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHccccEEEccc
Secondary Structure Prediction (SSPRO)
cEEEcccccHHHHHHHHHHHHHHccccHcccHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEEcc
Coil and Loop (DISEMBL)
mslpvghchpAVVKAACTQLALLntnnrflhDNLVLCARKLAsllpdplsvcffvnsgsEANDLALRLARVhtnnddvitqdq
Flexible Loop (DISEMBL)
mslpvghcHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLarvhtnnddvitqdq
Low Complexity Region (SEG)
MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ
Disordered region (IsUnstruct)
****VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH***********
Disordered Region (DISOPRED)
MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD*
Disordered Region (DISEMBL)
MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ
Disordered Region (DISPRO)
MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q9VU95	494	Alanine--glyoxylate amino	yes	N/A	0.951	0.159	0.708	2e-27
Q5E9S4	497	Ethanolamine-phosphate ph	yes	N/A	0.951	0.158	0.683	6e-26
Q8TBG4	499	Ethanolamine-phosphate ph	yes	N/A	0.951	0.158	0.670	7e-26
Q8BWU8	499	Ethanolamine-phosphate ph	yes	N/A	0.951	0.158	0.658	3e-25
Q6DEB1	509	Ethanolamine-phosphate ph	N/A	N/A	0.951	0.155	0.696	5e-25
Q7SY54	492	Ethanolamine-phosphate ph	yes	N/A	0.939	0.158	0.666	8e-25
Q8R1K4	467	5-phosphohydroxy-L-lysine	no	N/A	0.951	0.169	0.607	1e-21
Q8IUZ5	450	5-phosphohydroxy-L-lysine	no	N/A	0.951	0.175	0.594	4e-21
Q17QF0	514	Alanine--glyoxylate amino	no	N/A	0.963	0.155	0.518	1e-16
Q5RFA3	514	Alanine--glyoxylate amino	no	N/A	0.963	0.155	0.518	1e-16

>sp|Q9VU95|AGT2L_DROME Alanine--glyoxylate aminotransferase 2-like OS=Drosophila melanogaster GN=CG8745 PE=2 SV=2

 Score =  120 bits (302), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/79 (70%), Positives = 62/79 (78%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV+A   Q+A ++TNNRFLHD LV CAR L S +P+PLSVCFFVNSGSEANDL
Sbjct: 70  VGHCHPEVVRAGALQMATISTNNRFLHDELVQCARTLTSKMPEPLSVCFFVNSGSEANDL 129

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLAR  T   DVIT D 
Sbjct: 130 ALRLARNFTKRQDVITLDH 148

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q5E9S4|AT2L1_BOVIN Ethanolamine-phosphate phospho-lyase OS=Bos taurus GN=AGXT2L1 PE=2 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/79 (68%), Positives = 63/79 (79%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VVKAA  Q+ LLNTN+RFLHDN+V  A++L++ LPD LSVC+F NSGSEANDL
Sbjct: 59  VGHCHPEVVKAAQKQMELLNTNSRFLHDNIVEYAKRLSATLPDRLSVCYFTNSGSEANDL 118

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLAR    + DVIT D 
Sbjct: 119 ALRLARQFRGHQDVITLDH 137

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8TBG4|AT2L1_HUMAN Ethanolamine-phosphate phospho-lyase OS=Homo sapiens GN=AGXT2L1 PE=1 SV=1

 Score =  115 bits (288), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/79 (67%), Positives = 63/79 (79%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VVKAA  Q+ LLNTN+RFLHDN+V  A++L++ LP+ LSVC+F NSGSEANDL
Sbjct: 59  VGHCHPGVVKAALKQMELLNTNSRFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDL 118

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLAR    + DVIT D 
Sbjct: 119 ALRLARQFRGHQDVITLDH 137

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BWU8|AT2L1_MOUSE Ethanolamine-phosphate phospho-lyase OS=Mus musculus GN=Agxt2l1 PE=2 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/79 (65%), Positives = 61/79 (77%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VVKAA  Q+ LLNTN+RFLHDN++  A++L + LP  LSVC+F NSGSEANDL
Sbjct: 59  VGHCHPEVVKAAAKQMELLNTNSRFLHDNIIEFAKRLTATLPQELSVCYFTNSGSEANDL 118

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLAR    + DVIT D 
Sbjct: 119 ALRLARQFRGHQDVITLDH 137

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q6DEB1|AT2L1_XENLA Ethanolamine-phosphate phospho-lyase OS=Xenopus laevis GN=agxt2l1 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/79 (69%), Positives = 61/79 (77%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGH HP V KAA  Q+ LLNTN+RFLHDNLV  A  L S LP+ LSVC+FVNSGSEANDL
Sbjct: 59  VGHSHPEVTKAALKQMELLNTNSRFLHDNLVRYAECLISTLPEKLSVCYFVNSGSEANDL 118

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLAR +T + DVIT D 
Sbjct: 119 ALRLARQYTGHQDVITLDH 137

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q7SY54|AT2L1_DANRE Ethanolamine-phosphate phospho-lyase OS=Danio rerio GN=agxt2l1 PE=2 SV=1

 Score =  112 bits (279), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV A   Q+ LLNTN+RFLHD+LVL A++L + LP+ LSVC+FVNSGSEANDL
Sbjct: 60  VGHCHPDVVSAGAKQMELLNTNSRFLHDSLVLYAQRLQATLPEKLSVCYFVNSGSEANDL 119

Query: 65  ALRLARVHTNNDDVITQD 82
           ALRLA  +T + D+IT D
Sbjct: 120 ALRLAWQYTGHKDIITLD 137

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8R1K4|AT2L2_MOUSE 5-phosphohydroxy-L-lysine phospho-lyase OS=Mus musculus GN=Agxt2l2 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 62/79 (78%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV+AA  Q  +LNTN+R+LHDN+V  A++L+  LP+ LSV +F+NSGSEANDL
Sbjct: 60  VGHCHPTVVQAAHEQNLVLNTNSRYLHDNIVDYAQRLSETLPEQLSVFYFLNSGSEANDL 119

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLAR +T + DV+  D 
Sbjct: 120 ALRLARQYTGHQDVVVLDH 138

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8IUZ5|AT2L2_HUMAN 5-phosphohydroxy-L-lysine phospho-lyase OS=Homo sapiens GN=AGXT2L2 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/79 (59%), Positives = 61/79 (77%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV+AA  Q  +LNTN+R+LHDN+V  A++L+  LP+ L V +F+NSGSEANDL
Sbjct: 60  VGHCHPLVVQAAHEQNQVLNTNSRYLHDNIVDYAQRLSETLPEQLCVFYFLNSGSEANDL 119

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLAR +T + DV+  D 
Sbjct: 120 ALRLARHYTGHQDVVVLDH 138

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q17QF0|AGT2_BOVIN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Bos taurus GN=AGXT2 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/81 (51%), Positives = 58/81 (71%), Gaps = 1/81 (1%)

Query: 1   MSLPVGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
           +++ VGHCHP V  AA  QL  L +T++ F H  +   A KL++LLP+PL V F VNSGS
Sbjct: 112 VTVSVGHCHPKVNAAAQRQLGRLWHTSSVFFHPLIHEYAEKLSALLPEPLKVVFLVNSGS 171

Query: 60  EANDLALRLARVHTNNDDVIT 80
           EANDLA+ +AR H+N+ D+I+
Sbjct: 172 EANDLAMLMARAHSNSTDIIS 192

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

>sp|Q5RFA3|AGT2_PONAB Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii GN=AGXT2 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/81 (51%), Positives = 56/81 (69%), Gaps = 1/81 (1%)

Query: 1   MSLPVGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
           +++ VGHCHP V   A  QL  L +T+  F H  +   A KLA+LLP+PL V F VNSGS
Sbjct: 112 VTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGS 171

Query: 60  EANDLALRLARVHTNNDDVIT 80
           EAN+LA+ +AR H+NN D+I+
Sbjct: 172 EANELAMLMARAHSNNIDIIS 192

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
383855028	484	PREDICTED: alanine--glyoxylate aminotran	0.951	0.163	0.772	4e-30
242012375	440	alanine-glyoxylate aminotransferase, put	0.951	0.179	0.759	4e-30
332020516	485	Alanine--glyoxylate aminotransferase 2-l	0.951	0.162	0.772	1e-29
322778710	498	hypothetical protein SINV_00178 [Solenop	0.951	0.158	0.772	2e-29
340713065	485	PREDICTED: alanine--glyoxylate aminotran	0.951	0.162	0.734	5e-29
350419709	485	PREDICTED: alanine--glyoxylate aminotran	0.951	0.162	0.734	5e-29
91091742	472	PREDICTED: similar to AGAP000313-PA isof	0.915	0.161	0.723	4e-28
307174361	483	Alanine--glyoxylate aminotransferase 2-l	0.951	0.163	0.746	8e-28
66560647	140	PREDICTED: alanine--glyoxylate aminotran	0.951	0.564	0.734	1e-27
328779867	536	PREDICTED: alanine--glyoxylate aminotran	0.951	0.147	0.721	2e-27

>gi|383855028|ref|XP_003703021.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Megachile rotundata]

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/79 (77%), Positives = 68/79 (86%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV+A   Q+ALL+TNNRFLHDNLVLCAR+L SLLP+PLSVCF VNSGSEANDL
Sbjct: 62  VGHCHPTVVRAGQEQMALLSTNNRFLHDNLVLCARRLTSLLPEPLSVCFLVNSGSEANDL 121

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLA+ HT N D+IT D 
Sbjct: 122 ALRLAQTHTKNKDIITLDH 140

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012375|ref|XP_002426908.1| alanine-glyoxylate aminotransferase, putative [Pediculus humanus corporis] gi|212511137|gb|EEB14170.1| alanine-glyoxylate aminotransferase, putative [Pediculus humanus corporis]

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/79 (75%), Positives = 68/79 (86%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VVK  C Q+++LNTN+RFLHDNLVLCA+KL SL P PLSVCFFVNSGSEANDL
Sbjct: 58  VGHCHPEVVKETCDQISILNTNSRFLHDNLVLCAQKLTSLFPSPLSVCFFVNSGSEANDL 117

Query: 65  ALRLARVHTNNDDVITQDQ 83
           A+RLAR ++NN DVIT D 
Sbjct: 118 AIRLARTYSNNYDVITLDH 136

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020516|gb|EGI60931.1| Alanine--glyoxylate aminotransferase 2-like protein [Acromyrmex echinatior]

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/79 (77%), Positives = 68/79 (86%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV+A   Q+ALL+TNNRFLHDNLVLCA +LASLLP+PLS+CF VNSGSEANDL
Sbjct: 62  VGHCHPDVVRAGQEQMALLSTNNRFLHDNLVLCASRLASLLPEPLSICFLVNSGSEANDL 121

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLA+ HT N DVIT D 
Sbjct: 122 ALRLAQTHTKNKDVITLDH 140

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778710|gb|EFZ09126.1| hypothetical protein SINV_00178 [Solenopsis invicta]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/79 (77%), Positives = 68/79 (86%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV+A   Q+ALL+TNNRFLHDNLV+CA +LASLLP+PLSVCF VNSGSEANDL
Sbjct: 76  VGHCHPDVVRAGQEQMALLSTNNRFLHDNLVICASRLASLLPEPLSVCFLVNSGSEANDL 135

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLA+ HT N DVIT D 
Sbjct: 136 ALRLAQTHTKNKDVITLDH 154

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713065|ref|XP_003395072.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Bombus terrestris]

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 58/79 (73%), Positives = 68/79 (86%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV+A   Q+ALL+TNNRFLHD+LV+CAR+L SLLP+PLS+CF VNSGSEANDL
Sbjct: 62  VGHCHPTVVRAGQEQMALLSTNNRFLHDDLVICARRLTSLLPEPLSICFLVNSGSEANDL 121

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLA+ HT N D+IT D 
Sbjct: 122 ALRLAQTHTKNKDIITLDH 140

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419709|ref|XP_003492276.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Bombus impatiens]

 Score =  131 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 58/79 (73%), Positives = 68/79 (86%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV+A   Q+ALL+TNNRFLHD+LV+CAR+L SLLP+PLS+CF VNSGSEANDL
Sbjct: 62  VGHCHPTVVRAGQEQMALLSTNNRFLHDDLVICARRLTSLLPEPLSICFLVNSGSEANDL 121

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLA+ HT N D+IT D 
Sbjct: 122 ALRLAQTHTKNKDIITLDH 140

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091742|ref|XP_966408.1| PREDICTED: similar to AGAP000313-PA isoform 1 [Tribolium castaneum] gi|270001093|gb|EEZ97540.1| hypothetical protein TcasGA2_TC011390 [Tribolium castaneum]

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/76 (72%), Positives = 68/76 (89%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHPAVV+A C Q+++LNTNNRFLHDN+VLCA+++ + +PD LSVC+FVNSGSEANDL
Sbjct: 58  VGHCHPAVVEAGCRQMSILNTNNRFLHDNIVLCAQRIINTMPDKLSVCYFVNSGSEANDL 117

Query: 65  ALRLARVHTNNDDVIT 80
           ALRLA++HT N  VIT
Sbjct: 118 ALRLAQIHTGNRQVIT 133

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174361|gb|EFN64903.1| Alanine--glyoxylate aminotransferase 2-like [Camponotus floridanus]

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/79 (74%), Positives = 65/79 (82%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV+A   Q+ALL TNNRFLHDNLV+CA +LAS +P+PLSVCF VNSGSEANDL
Sbjct: 61  VGHCHPDVVRAGQEQMALLYTNNRFLHDNLVICASRLASFMPEPLSVCFLVNSGSEANDL 120

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLAR HT   DVIT D 
Sbjct: 121 ALRLARTHTKCKDVITLDH 139

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66560647|ref|XP_624323.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Apis mellifera]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 69/79 (87%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV+A   Q+ALL+TN+RFLHD+LV+CAR+L SLLP+PLSVCF VNSGSEANDL
Sbjct: 62  VGHCHPTVVRAGQEQMALLSTNSRFLHDDLVICARRLTSLLPEPLSVCFLVNSGSEANDL 121

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLA+ +TNN D+I  DQ
Sbjct: 122 ALRLAQTYTNNKDMIVLDQ 140

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779867|ref|XP_392348.2| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Apis mellifera]

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/79 (72%), Positives = 68/79 (86%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGHCHP VV+A   Q+ALL+TN+RFLHD+LV+CAR+L SLLP+PLSVCF VNSGSEANDL
Sbjct: 116 VGHCHPTVVRAGQEQMALLSTNSRFLHDDLVICARRLTSLLPEPLSVCFLVNSGSEANDL 175

Query: 65  ALRLARVHTNNDDVITQDQ 83
           ALRLA+ +TNN D+I  D 
Sbjct: 176 ALRLAQTYTNNKDMIVLDH 194

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
FB|FBgn0036381	494	CG8745 [Drosophila melanogaste	0.939	0.157	0.717	2.5e-25
UNIPROTKB|E7ENR6	459	AGXT2L1 "Ethanolamine-phosphat	0.939	0.169	0.679	1.4e-23
UNIPROTKB|Q5E9S4	497	AGXT2L1 "Ethanolamine-phosphat	0.939	0.156	0.692	2e-23
UNIPROTKB|Q8TBG4	499	AGXT2L1 "Ethanolamine-phosphat	0.939	0.156	0.679	2e-23
UNIPROTKB|F1S126	488	AGXT2L1 "Uncharacterized prote	0.939	0.159	0.679	4e-23
UNIPROTKB|F1S127	495	AGXT2L1 "Uncharacterized prote	0.939	0.157	0.679	4.2e-23
MGI|MGI:1919010	499	Agxt2l1 "alanine-glyoxylate am	0.939	0.156	0.666	5.6e-23
ZFIN|ZDB-GENE-040426-1133	492	agxt2l1 "alanine-glyoxylate am	0.939	0.158	0.666	8.8e-23
UNIPROTKB|E1C8Q2	501	AGXT2L1 "Uncharacterized prote	0.915	0.151	0.684	5.5e-22
UNIPROTKB|D6RFL9	70	AGXT2L1 "Ethanolamine-phosphat	0.795	0.942	0.712	1.5e-21

FB|FBgn0036381 CG8745 [Drosophila melanogaster (taxid:7227)]

 Score = 292 (107.8 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 56/78 (71%), Positives = 62/78 (79%)

Query:     5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
             VGHCHP VV+A   Q+A ++TNNRFLHD LV CAR L S +P+PLSVCFFVNSGSEANDL
Sbjct:    70 VGHCHPEVVRAGALQMATISTNNRFLHDELVQCARTLTSKMPEPLSVCFFVNSGSEANDL 129

Query:    65 ALRLARVHTNNDDVITQD 82
             ALRLAR  T   DVIT D
Sbjct:   130 ALRLARNFTKRQDVITLD 147

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEP

GO:0019544 "arginine catabolic process to glutamate" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS

UNIPROTKB|E7ENR6 AGXT2L1 "Ethanolamine-phosphate phospho-lyase" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/78 (67%), Positives = 63/78 (80%)

Query:     5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
             VGHCHP VVKAA  Q+ LLNTN+RFLHDN+V  A++L++ LP+ LSVC+F NSGSEANDL
Sbjct:    19 VGHCHPGVVKAALKQMELLNTNSRFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDL 78

Query:    65 ALRLARVHTNNDDVITQD 82
             ALRLAR    + DVIT D
Sbjct:    79 ALRLARQFRGHQDVITLD 96

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q5E9S4 AGXT2L1 "Ethanolamine-phosphate phospho-lyase" [Bos taurus (taxid:9913)]

 Score = 275 (101.9 bits), Expect = 2.0e-23, P = 2.0e-23
 Identities = 54/78 (69%), Positives = 63/78 (80%)

Query:     5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
             VGHCHP VVKAA  Q+ LLNTN+RFLHDN+V  A++L++ LPD LSVC+F NSGSEANDL
Sbjct:    59 VGHCHPEVVKAAQKQMELLNTNSRFLHDNIVEYAKRLSATLPDRLSVCYFTNSGSEANDL 118

Query:    65 ALRLARVHTNNDDVITQD 82
             ALRLAR    + DVIT D
Sbjct:   119 ALRLARQFRGHQDVITLD 136

GO:0005739 "mitochondrion" evidence=IEA

GO:0050459 "ethanolamine-phosphate phospho-lyase activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q8TBG4 AGXT2L1 "Ethanolamine-phosphate phospho-lyase" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 2.0e-23, P = 2.0e-23
 Identities = 53/78 (67%), Positives = 63/78 (80%)

Query:     5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
             VGHCHP VVKAA  Q+ LLNTN+RFLHDN+V  A++L++ LP+ LSVC+F NSGSEANDL
Sbjct:    59 VGHCHPGVVKAALKQMELLNTNSRFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDL 118

Query:    65 ALRLARVHTNNDDVITQD 82
             ALRLAR    + DVIT D
Sbjct:   119 ALRLARQFRGHQDVITLD 136

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0050459 "ethanolamine-phosphate phospho-lyase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=NAS

GO:0006520 "cellular amino acid metabolic process" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1S126 AGXT2L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 272 (100.8 bits), Expect = 4.0e-23, P = 4.0e-23
 Identities = 53/78 (67%), Positives = 63/78 (80%)

Query:     5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
             VGHCHP VV+AA  Q+ LLNTN+RFLHDN+V  A++L++ LPD LSVC+F NSGSEANDL
Sbjct:    59 VGHCHPEVVQAAQKQMELLNTNSRFLHDNIVEYAKRLSATLPDKLSVCYFTNSGSEANDL 118

Query:    65 ALRLARVHTNNDDVITQD 82
             ALRLAR    + DVIT D
Sbjct:   119 ALRLARQFRGHQDVITLD 136

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

UNIPROTKB|F1S127 AGXT2L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 272 (100.8 bits), Expect = 4.2e-23, P = 4.2e-23
 Identities = 53/78 (67%), Positives = 63/78 (80%)

Query:     5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
             VGHCHP VV+AA  Q+ LLNTN+RFLHDN+V  A++L++ LPD LSVC+F NSGSEANDL
Sbjct:    59 VGHCHPEVVQAAQKQMELLNTNSRFLHDNIVEYAKRLSATLPDKLSVCYFTNSGSEANDL 118

Query:    65 ALRLARVHTNNDDVITQD 82
             ALRLAR    + DVIT D
Sbjct:   119 ALRLARQFRGHQDVITLD 136

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

MGI|MGI:1919010 Agxt2l1 "alanine-glyoxylate aminotransferase 2-like 1" [Mus musculus (taxid:10090)]

 Score = 271 (100.5 bits), Expect = 5.6e-23, P = 5.6e-23
 Identities = 52/78 (66%), Positives = 61/78 (78%)

Query:     5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
             VGHCHP VVKAA  Q+ LLNTN+RFLHDN++  A++L + LP  LSVC+F NSGSEANDL
Sbjct:    59 VGHCHPEVVKAAAKQMELLNTNSRFLHDNIIEFAKRLTATLPQELSVCYFTNSGSEANDL 118

Query:    65 ALRLARVHTNNDDVITQD 82
             ALRLAR    + DVIT D
Sbjct:   119 ALRLARQFRGHQDVITLD 136

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008483 "transaminase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0050459 "ethanolamine-phosphate phospho-lyase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1133 agxt2l1 "alanine-glyoxylate aminotransferase 2-like 1" [Danio rerio (taxid:7955)]

 Score = 269 (99.8 bits), Expect = 8.8e-23, P = 8.8e-23
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:     5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
             VGHCHP VV A   Q+ LLNTN+RFLHD+LVL A++L + LP+ LSVC+FVNSGSEANDL
Sbjct:    60 VGHCHPDVVSAGAKQMELLNTNSRFLHDSLVLYAQRLQATLPEKLSVCYFVNSGSEANDL 119

Query:    65 ALRLARVHTNNDDVITQD 82
             ALRLA  +T + D+IT D
Sbjct:   120 ALRLAWQYTGHKDIITLD 137

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0050459 "ethanolamine-phosphate phospho-lyase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1C8Q2 AGXT2L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 52/76 (68%), Positives = 61/76 (80%)

Query:     5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
             VGH HP V KAA  Q+ LLNTN+RFLHDNLV  A++L + LP+ LSVC+FVNSGSEANDL
Sbjct:    59 VGHSHPYVTKAATKQMELLNTNSRFLHDNLVQYAQRLTATLPEKLSVCYFVNSGSEANDL 118

Query:    65 ALRLARVHTNNDDVIT 80
             ALRLAR +  + DVIT
Sbjct:   119 ALRLARQYHGHQDVIT 134

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|D6RFL9 AGXT2L1 "Ethanolamine-phosphate phospho-lyase" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 47/66 (71%), Positives = 57/66 (86%)

Query:     5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
             +GHCHP VVKAA  Q+ LLNTN+RFLHDN+V  A++L++ LP+ LSVC+F NSGSEANDL
Sbjct:     1 MGHCHPGVVKAALKQMELLNTNSRFLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDL 60

Query:    65 ALRLAR 70
             ALRLAR
Sbjct:    61 ALRLAR 66

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5E9S4	AT2L1_BOVIN	2, ., 6, ., 1, ., -	0.6835	0.9518	0.1589	yes	N/A
Q7SY54	AT2L1_DANRE	2, ., 6, ., 1, ., -	0.6666	0.9397	0.1585	yes	N/A
Q9VU95	AGT2L_DROME	2, ., 6, ., 1, ., -	0.7088	0.9518	0.1599	yes	N/A
Q8TBG4	AT2L1_HUMAN	2, ., 6, ., 1, ., -	0.6708	0.9518	0.1583	yes	N/A
Q8BWU8	AT2L1_MOUSE	2, ., 6, ., 1, ., -	0.6582	0.9518	0.1583	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	83
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	1e-39
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	2e-27
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	1e-26
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	2e-26
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	1e-17
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	7e-17
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	2e-16
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	6e-15
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	1e-14
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	2e-14
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	2e-13
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	2e-13
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	3e-13
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	5e-12
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	6e-11
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	7e-11
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	1e-10
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	1e-10
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	1e-09
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	4e-09
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	4e-09
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	4e-09
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	5e-09
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	5e-09
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	8e-09
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	1e-08
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	1e-08
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	2e-08
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	2e-08
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	3e-08
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	8e-08
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	2e-07
PRK00062	426	PRK00062, PRK00062, glutamate-1-semialdehyde amino	2e-07
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	2e-07
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	2e-07
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	3e-07
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	4e-07
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	4e-07
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	4e-07
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	9e-07
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	1e-06
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	2e-06
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	2e-06
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	3e-06
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	4e-06
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	6e-06
PRK12389	428	PRK12389, PRK12389, glutamate-1-semialdehyde amino	7e-06
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	8e-06
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	1e-05
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	1e-05
PRK06209	431	PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a	6e-05
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	6e-05
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	7e-05
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	1e-04
PRK00615	433	PRK00615, PRK00615, glutamate-1-semialdehyde amino	1e-04
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	1e-04
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	1e-04
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	1e-04
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	2e-04
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	3e-04
PLN02482	474	PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a	4e-04
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	4e-04
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	0.001
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	0.002
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	0.003
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	0.004

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  137 bits (348), Expect = 1e-39
 Identities = 49/78 (62%), Positives = 54/78 (69%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           VGH HP VV AA  Q A LNTN R+LHD +V  A +L + LPD L+V FFVNSGSEAN L
Sbjct: 636 VGHAHPRVVAAAARQAARLNTNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSL 695

Query: 65  ALRLARVHTNNDDVITQD 82
           ALRLAR HT   D I  D
Sbjct: 696 ALRLARAHTGQRDAIVLD 713

Length = 1013

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  102 bits (256), Expect = 2e-27
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 1   MSLPVGHCHPAVVKAACTQLALLN-TNNRFLH-DNLVLCARKLASLLPDP-LSVCFFVNS 57
             L +GH HP VV+A   QLA LN T+ R L+ +  V  A KL +L P   L   FF NS
Sbjct: 66  AVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNS 125

Query: 58  GSEANDLALRLARVHTNNDDVIT 80
           G+EA + A+++AR +T    VI 
Sbjct: 126 GAEAVEAAIKIARAYTGRPGVIA 148

Length = 447

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score =  100 bits (252), Expect = 1e-26
 Identities = 37/76 (48%), Positives = 49/76 (64%)

Query: 4   PVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
            +GH HP +  AA  Q +LLNTN+RF +  +   + +LA+L PD L   F VNSGSEAND
Sbjct: 596 VLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEAND 655

Query: 64  LALRLARVHTNNDDVI 79
           LA+RLA   +   DV+
Sbjct: 656 LAIRLAWAASGRRDVV 671

Length = 972

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score = 98.8 bits (247), Expect = 2e-26
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 1   MSLPVGHCHPAVVKAACTQLALLNT--NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSG 58
             L +GH HP VV+A   QLA L       F ++  V  A  L +L P+ L   FFVNSG
Sbjct: 46  GVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSG 105

Query: 59  SEANDLALRLARVHTNNDDVIT 80
           +EA + AL+LAR +T    +I+
Sbjct: 106 TEAVEAALKLARAYTGRKKIIS 127

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score = 74.6 bits (184), Expect = 1e-17
 Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 1  MSLPVGHCHPAVVKAACTQLA-LLNTNNR-FLHDNLVLCARKLASLLPDPLSVCFFVNSG 58
            + +GHCHP +V+A   Q   L +T+ R F  +  +  A KLA L P  L   FF+NSG
Sbjct: 26 AVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPALQLAEKLAQLTPGGLDRVFFMNSG 85

Query: 59 SEANDLALRLARVH 72
          SEAN+ A++LAR +
Sbjct: 86 SEANETAIKLARQY 99

Length = 338

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score = 73.0 bits (180), Expect = 7e-17
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNR--FLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEA 61
            GH  P + +A   QL  L       F H+  +  A KLA L P   L   FF +SGSEA
Sbjct: 58  HGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEA 117

Query: 62  NDLALRLAR 70
            + AL++A 
Sbjct: 118 VETALKMAL 126

Length = 449

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score = 71.4 bits (176), Expect = 2e-16
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 5   VGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
           +GHCHPA+V+A   Q   L + +N F ++     A KL  L P      FF NSG+EAN+
Sbjct: 56  LGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPF-ADRVFFCNSGAEANE 114

Query: 64  LALRLARVHT 73
            AL+LAR +T
Sbjct: 115 AALKLARKYT 124

Length = 404

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score = 67.2 bits (165), Expect = 6e-15
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 6   GHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLL-PDPLSVCFFVNSGSEAND 63
           GH HPAVV+A   QLA L + +N F  +  +  A +L  LL        FF NSG+EAN+
Sbjct: 58  GHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANE 117

Query: 64  LALRLARVH 72
            A +LAR+ 
Sbjct: 118 AAFKLARLT 126

Length = 398

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score = 66.3 bits (163), Expect = 1e-14
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 5   VGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
           +GHCHP +V+A   Q A L++T+N +  +     A KL  L    +   FF NSG+EAN+
Sbjct: 53  LGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSG--MDKVFFCNSGAEANE 110

Query: 64  LALRLARVHTNN 75
            A++LAR + + 
Sbjct: 111 AAIKLARKYGHK 122

Length = 396

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 5   VGHCHPAVVKAACTQL-ALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
           VGH HP VV+A   Q   L++  +    +++++  A +LA + P  L   FF NSG+EA 
Sbjct: 57  VGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAI 116

Query: 63  DLALRLARVHTNNDDVI 79
           + AL+LA+  T    +I
Sbjct: 117 EGALKLAKHVTKRPYII 133

Length = 433

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 5   VGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPD--PLSVCFFVNSGSE 60
           VGH HP VVKA   Q       +   F ++  V  A +L  + P      V FF NSG+E
Sbjct: 68  VGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKV-FFTNSGTE 126

Query: 61  ANDLALRLARVHTNNDDVI 79
           +N+ A+++AR HT    +I
Sbjct: 127 SNEAAIKIARYHTGRKYII 145

Length = 441

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 5   VGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
           +GH HP VV A   Q A L T      +D     AR +A   P  LS  FF N G++AN+
Sbjct: 67  IGHQHPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANE 126

Query: 64  LALRLARVHTNNDDVIT 80
            A+R+AR+HT    V++
Sbjct: 127 HAVRMARLHTGRPKVLS 143

Length = 451

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score = 62.3 bits (152), Expect = 3e-13
 Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 11/81 (13%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLH-DNLVLCA--RKLASLLPD--PLSVCFFVNSGS 59
           +GHCHP V KA   QL      +   H  NL   +   ++ASLL +     + FF NSG+
Sbjct: 43  LGHCHPTVTKAVQEQL------DDIWHVSNLFTNSLQEEVASLLAENSAGDLVFFCNSGA 96

Query: 60  EANDLALRLARVHTNNDDVIT 80
           EAN+ AL+LAR HT    ++T
Sbjct: 97  EANEAALKLARKHTGKSKIVT 117

Length = 377

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score = 59.0 bits (143), Expect = 5e-12
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 5   VGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
           +G+ HP V++    Q+A L  +  RF ++  + CA KL  +    L+   F   G+ A  
Sbjct: 85  LGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIG 144

Query: 64  LALRLARVHTNNDDVIT 80
           +AL+LAR  T N  V++
Sbjct: 145 MALKLARHITGNFKVVS 161

Length = 459

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score = 55.9 bits (135), Expect = 6e-11
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNL-VLCARKLASLLPDPLSVCFFVNSGSEAND 63
           VGH +P VV A   QLA    +++ L D L  + A+ LA+L P  L   FF NSG+E+ +
Sbjct: 96  VGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVE 155

Query: 64  LALRLARVHT 73
            AL+LA+ + 
Sbjct: 156 AALKLAKAYQ 165

Length = 459

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score = 55.7 bits (135), Expect = 7e-11
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFL---HDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
           VG+    +  AA  Q+  L   N F    H   +  A KLA + P   +  FF NSGSEA
Sbjct: 64  VGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEA 123

Query: 62  NDLALRLARV 71
           ND  LR+ R 
Sbjct: 124 NDTVLRMVRH 133

Length = 456

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 2   SLPVGHCHPAVVKAACTQLALLNTNNRF---LHDNLVLCARKLASLLPDPLSVCFFVNSG 58
           S+ +G     +V+AA  Q+  L   + F    H  ++  A KL ++ P P+S  FF NSG
Sbjct: 59  SVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSG 118

Query: 59  SEANDLALRLARVHTN 74
           SEAND  ++L   + N
Sbjct: 119 SEANDTVVKLVWYYNN 134

Length = 460

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score = 55.1 bits (133), Expect = 1e-10
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 5   VGHCHPAVVKAACTQL-ALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
           +GH HP +V+A   QL  L++ +N +  +     A KL           FF NSG+EAN+
Sbjct: 41  LGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSG--ADRVFFCNSGAEANE 98

Query: 64  LALRLARVHT 73
            AL+LAR +T
Sbjct: 99  AALKLARKYT 108

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 4   PVGHCHPAVVKAACTQLALLNTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
             GH  P +V+A   Q A L+    F   H      A +LA L P  L   FF NSGSE+
Sbjct: 62  NAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSES 121

Query: 62  NDLALRLAR 70
            D AL++A 
Sbjct: 122 VDTALKIAL 130

Length = 445

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 6   GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASL-LPDPLSVCFFVNSGSEAND 63
           GHCHPA+VKA   Q   L + +N F ++  +  A+KL      + +   FF NSG+EAN+
Sbjct: 55  GHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATFAERV---FFANSGAEANE 111

Query: 64  LALRLAR 70
            A +LAR
Sbjct: 112 AAFKLAR 118

Length = 403

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score = 50.9 bits (122), Expect = 4e-09
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 14/84 (16%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDN--------LVLCARKLASLLPDPLSVCFFVN 56
           VGH +P VVKA   Q       ++ +H           +L A KL  + P       F  
Sbjct: 55  VGHNNPRVVKAIKEQT------DKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGL 108

Query: 57  SGSEANDLALRLARVHTNNDDVIT 80
           SGS+AND A++ AR +T    +++
Sbjct: 109 SGSDANDGAIKFARAYTKRRKILS 132

Length = 443

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 50.6 bits (122), Expect = 4e-09
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 6   GHCHPAVVKAACTQLA------LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
           GH HP +  A   QL                H+  +  A +L  + P+ L   FF +SGS
Sbjct: 46  GHNHPEINAAIKEQLDKLEHVMFGG----LTHEPAIELAERLVEITPEGLEKVFFSDSGS 101

Query: 60  EANDLALRLA 69
            A ++AL++A
Sbjct: 102 VAVEVALKMA 111

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score = 50.5 bits (121), Expect = 5e-09
 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 5   VGHCHPAVVKAACTQLALL--NTNNRFLHDNLVLCARKLASLLPD--PLSVCFFVNSGSE 60
           VGH  P VV+A   Q       T     H+ LV  A+KL  L P      V F   SGS+
Sbjct: 56  VGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFG-LSGSD 114

Query: 61  ANDLALRLARVHTNNDDVIT 80
           AND  ++ AR +T    +I+
Sbjct: 115 ANDGIIKFARAYTGRPYIIS 134

Length = 445

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 6   GHCHPAVVKAACTQ---LALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
           GHCHP ++ A   Q   L L  T+  F +D L L  + +  L          +NSG+EA 
Sbjct: 46  GHCHPKILAALINQAQKLTL--TSRAFYNDVLGLAEKYITDLF--GYDKVLPMNSGAEAG 101

Query: 63  DLALRLAR 70
           + AL+ AR
Sbjct: 102 ETALKFAR 109

Length = 400

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score = 50.2 bits (120), Expect = 8e-09
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 2   SLPVGHCHPAVVKAACTQL-ALLNTN-NRFLHDNLVLCARKLASLLP-DPLSVCFFVNSG 58
           ++ VGH HP V +A   Q+   ++T  N  +++  +  A KLA+L P        F+NSG
Sbjct: 65  TINVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSG 124

Query: 59  SEANDLALRLARVHTNNDDVIT 80
           +EA + A+++AR +T    +I+
Sbjct: 125 AEAVENAVKIARKYTKRQGIIS 146

Length = 451

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 49.4 bits (119), Expect = 1e-08
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%)

Query: 6   GHCHPAVVKAACTQLALLN-------TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSG 58
           GH HP + +A   QL  L+       T     H+     A++L +L P  L   FF +SG
Sbjct: 57  GHNHPYIDQAIREQLDRLDHVIFAGFT-----HEPAERLAQRLVALTPGGLDHVFFSDSG 111

Query: 59  SEANDLALRLA 69
           S A ++AL++A
Sbjct: 112 SVAVEVALKMA 122

Length = 423

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 6   GHCHPAVVKAACTQLAL-LNTNNRFLHDNLVLCARKLASLLPDPLSVCF--FVNSGSEAN 62
           GH HPAVV+A   QL   L+       +  V  A  L   +P   S+    FVNSG+EA 
Sbjct: 68  GHAHPAVVEAVQEQLERGLSFGAPTELE--VELAELLIERVP---SIEKVRFVNSGTEAT 122

Query: 63  DLALRLARVHTNNDDVI 79
             A+RLAR +T  D +I
Sbjct: 123 MSAIRLARAYTGRDKII 139

Length = 432

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNL-VLCARKLASLLPDPLSVCFFVNSGSEAND 63
           VGH +P V+ A   QLA    +++ L D L  L A+ LA+L P  L   FF NSG+E+ +
Sbjct: 89  VGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVE 148

Query: 64  LALRLARVH 72
            AL+LA+ +
Sbjct: 149 AALKLAKAY 157

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 5   VGHCHPAVVKAACTQL-ALLNTNNRFLHDNLVLCARKLASL-LPDPLSVCFFVNSGSEAN 62
           +GH HP +VKA   Q   L +  N + ++ ++  A+KL      D +   FF NSG+EAN
Sbjct: 49  LGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATFADKV---FFCNSGAEAN 105

Query: 63  DLALRLAR 70
           + AL+LAR
Sbjct: 106 EAALKLAR 113

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score = 48.6 bits (116), Expect = 3e-08
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 6   GHCHPAVVKAACTQLALLNTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
           GH  P +V+A   Q   L+    F   H      A ++A + P  L+  FF NSGSE+ D
Sbjct: 61  GHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVD 120

Query: 64  LALRLAR 70
            AL++A 
Sbjct: 121 TALKIAL 127

Length = 442

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score = 47.0 bits (112), Expect = 8e-08
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 15/83 (18%)

Query: 6   GHCHPAVVKAACTQLALLNTNNRFLH--------DNLVLCARKLASLLP-DPLSVCFFVN 56
           GH HP V+ A   QL      +RF H        +N V  A +L +L+P D      FV 
Sbjct: 55  GHRHPRVIAAVKAQL------DRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVT 108

Query: 57  SGSEANDLALRLARVHTNNDDVI 79
           +G+EA + A+++AR  T    VI
Sbjct: 109 TGAEAVENAVKIARAATGRSAVI 131

Length = 425

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 5   VGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
           VGH    + +AA  Q   L       + H   +  A +LA+L P  L+  FF   GSEA 
Sbjct: 66  VGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAV 125

Query: 63  DLALRLAR 70
           + A +LA+
Sbjct: 126 ESAWKLAK 133

Length = 460

>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 46.2 bits (111), Expect = 2e-07
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 24/86 (27%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDNL---------VLCARKLASLLPDPLSV--CF 53
           +GH HP VV+A                  L         V  A  +  L+P   S+    
Sbjct: 64  LGHAHPEVVEAVIEAAE----------KGLSFGAPTELEVELAELVIELVP---SIEMVR 110

Query: 54  FVNSGSEANDLALRLARVHTNNDDVI 79
            VNSG+EA   A+RLAR +T  D +I
Sbjct: 111 MVNSGTEATMSAIRLARGYTGRDKII 136

Length = 426

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 15/72 (20%)

Query: 6   GHCHPAVVKAACTQLALLNTNNR-FLHDNLVLCARKLASL------LPDPLSVCFFVNSG 58
           GHCHP +VKA   Q   L  ++R F +D     A  +  L      LP        +N+G
Sbjct: 52  GHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYDKVLP--------MNTG 103

Query: 59  SEANDLALRLAR 70
           +EA + A++LAR
Sbjct: 104 AEAVETAIKLAR 115

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 12/83 (14%)

Query: 2   SLPVGHCHPAVVKAACTQLAL-----LNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVN 56
            L +GH HP VV+A    L         T         +L A+++ S +P  + +  FVN
Sbjct: 59  PLILGHAHPRVVEAVKEALERGTSYGAPTEAE------ILLAKEIISRVP-SVEMVRFVN 111

Query: 57  SGSEANDLALRLARVHTNNDDVI 79
           SG+EA   A+RLAR +T  D +I
Sbjct: 112 SGTEATMSAVRLARGYTGRDKII 134

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLHDN---LVLCARKLASLLPDPLSVCFFVNSGSEA 61
           +G+    +  AA  Q+  L   N F H     ++  +  L SLLP   S   + NSGSEA
Sbjct: 68  LGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEA 127

Query: 62  NDLALRLAR 70
           N++ +R  R
Sbjct: 128 NEVLIRTVR 136

Length = 460

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query: 38  ARKLASLLPDPLSVCFFVNSGSEANDLALRLA 69
           A+KL+ L P  L+  FFVNSGSEAN+ A+++A
Sbjct: 80  AKKLSDLSPGDLNWSFFVNSGSEANETAMKIA 111

Length = 447

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 9/71 (12%)

Query: 6   GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLS---VCFFVNSGSEA 61
           GH HP +V+A   Q   L + +N +     +    +LA  L +  S     FF NSG+EA
Sbjct: 46  GHAHPHLVEALKEQAEKLWHVSNLYR----IPEQERLAERLVE-NSFADKVFFTNSGAEA 100

Query: 62  NDLALRLARVH 72
            + A++ AR +
Sbjct: 101 VECAIKTARRY 111

Length = 389

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 5/67 (7%)

Query: 6   GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLA-SLLPDPLSVCFFVNSGSEAND 63
           GH HPA+ +A   Q +   +T N + ++ ++  A+KL  +   D +   FF NSG+EAN+
Sbjct: 54  GHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRV---FFCNSGAEANE 110

Query: 64  LALRLAR 70
            AL+LAR
Sbjct: 111 AALKLAR 117

Length = 406

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score = 44.3 bits (105), Expect = 9e-07
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 16/87 (18%)

Query: 6   GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVC----FFVNSGSE 60
           GHC+P +V+A   Q   L+N +  F ++ +     KLA LL      C    FF NSG+E
Sbjct: 51  GHCNPGMVEALAAQAEKLINPSPAFYNEPMA----KLAGLLTQ--HSCFDKVFFANSGAE 104

Query: 61  ANDLALRLAR----VHTNND-DVITQD 82
           AN+ A++LAR     H N   ++IT D
Sbjct: 105 ANEGAIKLARKWGRKHKNGAYEIITFD 131

Length = 395

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRF----LHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
           VG+    + +AA  QL    T + F     H+  +  A KL   L     V FF NSGSE
Sbjct: 61  VGYGRKELAEAAYEQL---KTLSYFPLTQSHEPAIKLAEKLNEWLGGEY-VIFFSNSGSE 116

Query: 61  ANDLALRLAR 70
           AN+ A ++AR
Sbjct: 117 ANETAFKIAR 126

Length = 451

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 6   GHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKL-ASLLPDPLSVCFFVNSGSEAND 63
           GH  P  VKA   Q   L + +N +     V  A++L AS   D +   FF NSG+EAN+
Sbjct: 30  GHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSFADRV---FFCNSGTEANE 86

Query: 64  LALRLAR---VHTNNDD 77
            A++ AR        D 
Sbjct: 87  AAIKFARKYQRVRAPDK 103

Length = 382

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 19/89 (21%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLH--------DNLVLCARKLASLLP---DPLSVCF 53
           VG+  P VV+A   Q+A      RF H        +  V  A +L  L P   +  S  F
Sbjct: 70  VGNSAPRVVEAVREQVA------RFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALF 123

Query: 54  FVNSGSEANDLALRLARVHTNNDDVITQD 82
             NSG+EA + A+++AR +T    V+  D
Sbjct: 124 --NSGAEAVENAVKIARSYTGRQAVVVFD 150

Length = 443

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 6   GHCHPAVVKAACTQLALLNTNNRFLHDNLVLC--ARKLASLL----PDPLSVCFFVNSGS 59
           GH HP V+ A   Q+  L     + H +      A  LA  L    P  L   +FV+ GS
Sbjct: 45  GHSHPRVIAAIHAQIDRLA----YAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGS 100

Query: 60  EANDLALRLAR 70
           EA + AL+LAR
Sbjct: 101 EAVEAALKLAR 111

Length = 443

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 3   LPVGHCHPAVVKAACTQLALLNTNNRFL---HDNLVLCARKLASLLP--DPLSVCFFVNS 57
           L +GH HP VV A  TQ+A   T+  F+   ++  V  A KL  + P   P    FF NS
Sbjct: 45  LNIGHSHPRVVDAVRTQVAEF-THTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFF-NS 102

Query: 58  GSEANDLALRLARVHTNNDDVIT 80
           G+EA + A+++AR +T    V+ 
Sbjct: 103 GAEAVENAVKIARSYTGRPGVVA 125

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score = 41.9 bits (98), Expect = 6e-06
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 3   LPVGHCHPAVVKAACTQL-ALLNTNNRFL-HDNLVLCARKLASLLP--DPLSVCFFVNSG 58
           L  GH HP +V A   QL    +T  + + +++ V  A K+ +L P        FF  +G
Sbjct: 52  LNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFF-TTG 110

Query: 59  SEANDLALRLARVHTNNDDVI 79
           +EA + A+++AR HT    VI
Sbjct: 111 AEAVENAVKIARAHTGRPGVI 131

Length = 421

>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 6   GHCHPAVVKAACTQLA---LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
           GH HP + KA         L  T      +     A+ L   +P  L    FVNSG+EA 
Sbjct: 68  GHAHPHITKAITEAAENGVLYGTPTE--LEIEF--AKMLKEAIPS-LEKVRFVNSGTEAV 122

Query: 63  DLALRLARVHTNNDDVI 79
              +R+AR +T    +I
Sbjct: 123 MTTIRVARAYTGRTKII 139

Length = 428

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score = 41.7 bits (98), Expect = 8e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 15/72 (20%)

Query: 6   GHCHPAVVKAACTQLALLNTNNR-FLHDNLVLCARKLASL------LPDPLSVCFFVNSG 58
           GHCHP ++ A   Q   L   +R F +D L     +LA+L      LP        +NSG
Sbjct: 56  GHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSHKVLP--------MNSG 107

Query: 59  SEANDLALRLAR 70
           +EA + A++  R
Sbjct: 108 AEAVETAIKAVR 119

Length = 401

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 6   GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
           G+ HP +  AA  QLA ++      F H+  V  A+KL  +LP  L+  FF +SGS A +
Sbjct: 59  GYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVE 118

Query: 64  LALRLA 69
           +A+++A
Sbjct: 119 VAMKMA 124

Length = 429

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 16/79 (20%)

Query: 9   HPAVVKAACTQLALLNTNNRFLHD-NLVL------CARKLASLLPDPLSVCFFVNSGSEA 61
           HP V      Q AL        H  NL L       A+KL     D   + FF NSG+EA
Sbjct: 46  HPQV------QQALQKQAGLIWHSPNLYLNSLQEEVAQKLIG---DKDYLAFFCNSGAEA 96

Query: 62  NDLALRLARVHTNNDDVIT 80
           N+ A+++AR  T   ++IT
Sbjct: 97  NEAAIKIARKATGKQEIIT 115

Length = 375

>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional

 Score = 38.9 bits (91), Expect = 6e-05
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 2   SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNL--VLCARKLASLLPDPLSVCFFVNSGS 59
           ++ +GH +P VV+A    L        F   +   +  A     L+     V F  N GS
Sbjct: 59  AVGLGHAYPPVVEAVREALQD---GCNFTRPSAIELDAAESFLELIDGADMVKFCKN-GS 114

Query: 60  EANDLALRLARVHTNNDDV 78
           +A   A+RLAR +T  D V
Sbjct: 115 DATSAAVRLARAYTGRDLV 133

Length = 431

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 39.1 bits (91), Expect = 6e-05
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 8/69 (11%)

Query: 6   GHCHPAVVKAACTQLALLNTNNRFL-----HDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
           GH HP +  AA  Q+   +T +  +     H+  +   RKL +L  + L   F+ +SGS 
Sbjct: 55  GHGHPRLKAAAHKQI---DTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSV 111

Query: 61  ANDLALRLA 69
           + ++A+++A
Sbjct: 112 SVEVAIKMA 120

Length = 422

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 16/37 (43%), Positives = 18/37 (48%)

Query: 38  ARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN 74
           A KLA L P  L+  F    GS A D ALR    + N
Sbjct: 101 AAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFN 137

Length = 466

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRF---LHDNLVLCARKLASLL-PDPLSVCFFVNSGSE 60
           VGH    V +A   QL  L   + F    H   +  + +L  +  P+ +   FF + GS+
Sbjct: 56  VGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSD 115

Query: 61  ANDLALRLAR 70
           + + AL+LAR
Sbjct: 116 SVETALKLAR 125

Length = 449

>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 2   SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
           SL  GH HP +  A   Q A   T+     +  +L A +L S L        FV+SG+EA
Sbjct: 64  SLIHGHSHPKICDAIQ-QGAERGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEA 122

Query: 62  NDLALRLARVHTNNDDVI 79
              A+RLAR  T    +I
Sbjct: 123 TMTAVRLARGITGRSIII 140

Length = 433

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 6   GHCHPAVVKAACTQLALLNTNN-RFLHDNLVL-CARKLASLLPDPLSVCFFVNSGSEAND 63
           G+ HP +VKA   Q+AL+  +   + H    +  A KLA + P       F  SGS+A D
Sbjct: 68  GYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVD 127

Query: 64  LALRLARVHT 73
           +A+++++  T
Sbjct: 128 MAIKVSKFST 137

Length = 457

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 3   LPVGHCHPAVVKAACTQLALL-NTNNRFL-HDNLVLCARKLASLLP-DPLSVCFFVNSGS 59
           L  GH HP VV A   QL  L +T  + L ++  +    K+   +P D       V +GS
Sbjct: 53  LNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGS 112

Query: 60  EANDLALRLARVHTNNDDVI 79
           EA + A+++AR  T    VI
Sbjct: 113 EAVENAVKIARAATKRSGVI 132

Length = 425

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 6   GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
           GH +P + +    Q+  L       F H+ ++  + +L  + P  LS CF+ ++GS A +
Sbjct: 62  GHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIE 121

Query: 64  LALRLA 69
           +AL+++
Sbjct: 122 VALKMS 127

Length = 466

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 5   VGHCHPAVVKAACTQLALL----NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
           +G   P +V AA  QL  L    +  NR    +L L    L       +   FF NSGSE
Sbjct: 103 LGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSE 162

Query: 61  ANDLALRLARVHTN 74
           AND  ++L   + N
Sbjct: 163 ANDTQVKLVWYYNN 176

Length = 504

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 15/72 (20%)

Query: 6   GHCHPAVVKAACTQLALLNTNNR-FLHDNLVLCARKLASL------LPDPLSVCFFVNSG 58
           GHCHP ++KA   Q   L  ++R F +D     A  L S+      LP        +N+G
Sbjct: 90  GHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYDMVLP--------MNTG 141

Query: 59  SEANDLALRLAR 70
           +E  + A++LAR
Sbjct: 142 AEGVETAIKLAR 153

Length = 474

>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 54  FVNSGSEANDLALRLARVHTNNDDVI 79
           FVNSG+EA    LRLAR +T  + +I
Sbjct: 160 FVNSGTEACMGVLRLARAYTGREKII 185

Length = 474

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 3   LPVGHCHPAVVKAACTQL-ALLNTNNRFL-HDNLVLCARKLASLLP--DPLSVCFFVNSG 58
           L  GH HP VV A   QL    +T  + + + + V  A ++ +L P   P    FF  +G
Sbjct: 52  LNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFF-TTG 110

Query: 59  SEANDLALRLARVHTNNDDVIT 80
           +EA + A+++AR +T    VI 
Sbjct: 111 AEAVENAVKIARAYTGRPGVIA 132

Length = 421

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 14/72 (19%)

Query: 6   GHCHPAVVKAACTQLALLNTNNRFLHDNL--------VLCARKLASLLPDPLSVCFFVNS 57
           GH  P + +A   QL      N+  H  L        +L A KL  ++P+ L   F+ +S
Sbjct: 71  GHQVPELDEAIREQL------NKIAHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDS 124

Query: 58  GSEANDLALRLA 69
           G+ A ++A+++A
Sbjct: 125 GATAVEIAIKMA 136

Length = 460

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 2   SLPVGHCHPAVVKAACTQLALLNTNNR-----FLHDNLVLCARK-LASLLPDPLSVCFFV 55
           S+P+G+ +PA++KAA +        NR     F   +     ++ +  + P      +  
Sbjct: 69  SIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKVAPKGQDQVWTG 128

Query: 56  NSGSEANDLALRLARVH 72
            SGS+AN+LA + A ++
Sbjct: 129 MSGSDANELAFKAAFMY 145

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFLH---DNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
           VG+   ++V+AA  Q+  L     + H   +  +  A KLA   P  L+  +F   GS+A
Sbjct: 60  VGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDA 119

Query: 62  NDLALRLARVHTN 74
            D A+R  R + N
Sbjct: 120 VDSAVRFIRHYWN 132

Length = 459

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 5   VGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKL--ASLLPDPLSVCFFVNSGSEA 61
           +GH  P +V A   Q   L +T+N F     +  A +L  AS   + + +C   NSG+EA
Sbjct: 54  LGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRFAEKVFLC---NSGTEA 110

Query: 62  NDLALRLAR 70
           N+ A++L R
Sbjct: 111 NEAAIKLVR 119

Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.96
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.93
KOG1404|consensus	442		99.93
PRK06062	451	hypothetical protein; Provisional	99.93
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.92
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.92
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.91
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.91
PRK05965	459	hypothetical protein; Provisional	99.91
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.91
PRK07482	461	hypothetical protein; Provisional	99.91
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.91
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.91
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.91
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.91
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.91
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.91
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.91
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.91
PRK07483	443	hypothetical protein; Provisional	99.91
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.91
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.9
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.9
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.9
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.9
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.9
PRK06917	447	hypothetical protein; Provisional	99.9
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.9
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.9
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.9
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.9
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.9
PRK07481	449	hypothetical protein; Provisional	99.9
PRK06148	1013	hypothetical protein; Provisional	99.9
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.9
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.9
PRK07036	466	hypothetical protein; Provisional	99.9
PRK07678	451	aminotransferase; Validated	99.89
PRK07480	456	putative aminotransferase; Validated	99.89
PRK06541	460	hypothetical protein; Provisional	99.89
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.89
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.89
PRK06105	460	aminotransferase; Provisional	99.89
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.89
PRK07046	453	aminotransferase; Validated	99.89
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.89
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.89
PRK08297	443	L-lysine aminotransferase; Provisional	99.88
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.88
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.88
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.88
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.88
PLN00144	382	acetylornithine transaminase	99.88
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.88
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.87
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.87
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.87
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.87
PRK06149	972	hypothetical protein; Provisional	99.87
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.86
PRK12403	460	putative aminotransferase; Provisional	99.86
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.85
KOG1401|consensus	433		99.84
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.84
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.84
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.84
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.83
PLN02624	474	ornithine-delta-aminotransferase	99.83
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.83
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.82
KOG1403|consensus	452		99.82
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.81
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.81
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.78
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.78
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.75
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.73
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.73
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.68
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.65
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.64
PRK04260	375	acetylornithine aminotransferase; Provisional	99.63
KOG1402|consensus	427		99.62
PRK02627	396	acetylornithine aminotransferase; Provisional	99.59
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.39
PRK07505	402	hypothetical protein; Provisional	99.3
KOG1405|consensus	484		99.17
PRK13393	406	5-aminolevulinate synthase; Provisional	98.76
PRK09064	407	5-aminolevulinate synthase; Validated	98.56
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	98.49
PRK13520	371	L-tyrosine decarboxylase; Provisional	98.17
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	98.16
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	98.08
PRK07179	407	hypothetical protein; Provisional	98.07
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	97.86
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	97.71
PRK13392	410	5-aminolevulinate synthase; Provisional	97.66
KOG1549|consensus	428		97.65
PLN02822	481	serine palmitoyltransferase	97.55
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	97.5
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	97.43
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	97.41
PLN03032	374	serine decarboxylase; Provisional	97.3
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	97.22
PLN02651	364	cysteine desulfurase	97.14
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	97.08
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	96.9
PRK02948	381	cysteine desulfurase; Provisional	96.82
PRK06225	380	aspartate aminotransferase; Provisional	96.76
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	96.69
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	96.61
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	96.59
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	96.52
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	96.45
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	96.41
PRK14012	404	cysteine desulfurase; Provisional	96.35
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	96.27
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	96.24
PRK02769	380	histidine decarboxylase; Provisional	96.15
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	96.11
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	96.06
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	96.03
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	95.99
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	95.91
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	95.72
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	95.71
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	95.59
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	95.55
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	95.42
PLN02721	353	threonine aldolase	95.31
PRK10874	401	cysteine sulfinate desulfinase; Provisional	95.29
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	95.25
cd00609	350	AAT_like Aspartate aminotransferase family. This f	95.21
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	95.21
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	95.04
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	95.04
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	95.03
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	95.0
PRK10534	333	L-threonine aldolase; Provisional	94.82
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	94.81
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	94.69
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	94.57
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	94.54
PLN02187	462	rooty/superroot1	94.52
PRK01533	366	histidinol-phosphate aminotransferase; Validated	94.48
PRK09105	370	putative aminotransferase; Provisional	94.47
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	94.47
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	94.3
PRK03080	378	phosphoserine aminotransferase; Provisional	94.28
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	94.25
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	94.22
PLN02955	476	8-amino-7-oxononanoate synthase	94.18
PRK07050	394	cystathionine beta-lyase; Provisional	94.15
PLN02263	470	serine decarboxylase	94.08
PRK02731	367	histidinol-phosphate aminotransferase; Validated	94.07
PRK06108	382	aspartate aminotransferase; Provisional	93.95
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	93.89
PRK00451	447	glycine dehydrogenase subunit 1; Validated	93.86
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	93.85
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	93.82
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	93.75
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	93.71
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	93.69
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	93.66
PRK13034	416	serine hydroxymethyltransferase; Reviewed	93.6
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	93.56
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	93.54
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	93.32
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	93.28
PRK00950	361	histidinol-phosphate aminotransferase; Validated	93.18
PRK06358	354	threonine-phosphate decarboxylase; Provisional	93.16
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	93.09
PRK07682	378	hypothetical protein; Validated	92.95
KOG0259|consensus	447		92.94
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	92.89
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	92.76
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	92.66
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	92.62
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	92.55
PRK08861	388	cystathionine gamma-synthase; Provisional	92.49
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	92.47
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	92.45
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	92.41
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	92.37
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	92.33
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	92.22
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	92.18
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	92.16
TIGR01814	406	kynureninase kynureninase. This model describes ky	92.13
PRK08056	356	threonine-phosphate decarboxylase; Provisional	92.08
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	91.89
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	91.71
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	91.71
PRK07908	349	hypothetical protein; Provisional	91.62
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	91.44
PRK04311	464	selenocysteine synthase; Provisional	91.39
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	91.38
PLN02409	401	serine--glyoxylate aminotransaminase	91.14
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	91.05
PRK07392	360	threonine-phosphate decarboxylase; Validated	90.92
PRK06767	386	methionine gamma-lyase; Provisional	90.76
PRK07269	364	cystathionine gamma-synthase; Reviewed	90.53
PLN02242	418	methionine gamma-lyase	90.53
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	90.51
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	90.46
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	90.37
PLN02452	365	phosphoserine transaminase	90.29
PLN02880	490	tyrosine decarboxylase	90.2
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	90.13
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	90.1
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	89.98
PTZ00094	452	serine hydroxymethyltransferase; Provisional	89.95
PRK07503	403	methionine gamma-lyase; Provisional	89.66
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	89.5
PLN02656	409	tyrosine transaminase	89.3
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	89.27
PRK05764	393	aspartate aminotransferase; Provisional	89.19
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	89.19
PRK12462	364	phosphoserine aminotransferase; Provisional	89.14
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	89.13
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	88.72
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	88.33
PRK08363	398	alanine aminotransferase; Validated	88.18
PRK08960	387	hypothetical protein; Provisional	88.16
PRK07568	397	aspartate aminotransferase; Provisional	87.99
PRK08361	391	aspartate aminotransferase; Provisional	87.9
PRK09082	386	methionine aminotransferase; Validated	87.85
PLN02590	539	probable tyrosine decarboxylase	87.84
PRK05968	389	hypothetical protein; Provisional	87.78
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	87.76
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	87.62
PRK12414	384	putative aminotransferase; Provisional	87.58
PRK06434	384	cystathionine gamma-lyase; Validated	87.46
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	86.83
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	86.78
PRK03321	352	putative aminotransferase; Provisional	86.54
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	86.38
PRK09028	394	cystathionine beta-lyase; Provisional	86.33
PRK07582	366	cystathionine gamma-lyase; Validated	86.27
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	86.13
PRK08247	366	cystathionine gamma-synthase; Reviewed	85.85
PRK05939	397	hypothetical protein; Provisional	85.75
PRK05957	389	aspartate aminotransferase; Provisional	85.75
PRK07683	387	aminotransferase A; Validated	85.7
PRK06107	402	aspartate aminotransferase; Provisional	85.31
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	85.31
PRK08249	398	cystathionine gamma-synthase; Provisional	85.19
KOG2433|consensus	577		85.14
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	85.06
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	85.01
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	84.94
PRK08574	385	cystathionine gamma-synthase; Provisional	84.75
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	84.56
PRK06234	400	methionine gamma-lyase; Provisional	84.55
PRK08045	386	cystathionine gamma-synthase; Provisional	84.48
PTZ00433	412	tyrosine aminotransferase; Provisional	83.98
PLN02483	489	serine palmitoyltransferase	83.88
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	83.67
PRK06207	405	aspartate aminotransferase; Provisional	83.31
PRK07777	387	aminotransferase; Validated	83.17
PRK07811	388	cystathionine gamma-synthase; Provisional	83.03
PRK09265	404	aminotransferase AlaT; Validated	82.74
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	82.65
PRK06425	332	histidinol-phosphate aminotransferase; Validated	82.27
PRK07324	373	transaminase; Validated	82.15
PRK08354	311	putative aminotransferase; Provisional	81.75
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	81.53
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	81.52
PRK08114	395	cystathionine beta-lyase; Provisional	81.51
PRK04366	481	glycine dehydrogenase subunit 2; Validated	80.7
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	80.68
PRK08776	405	cystathionine gamma-synthase; Provisional	80.14

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=1.8e-28  Score=166.25  Aligned_cols=82  Identities=39%  Similarity=0.546  Sum_probs=77.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC---CC
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN---ND   76 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~---r~   76 (83)
                      +++++||+||.|++++.+|++++ +.++.|.+++..+|+++|++.+| ..++|||+|||+||||+|||+||+|++   |.
T Consensus        52 av~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~  130 (404)
T COG4992          52 AVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYTGDPEKS  130 (404)
T ss_pred             eeeccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCc
Confidence            47899999999999999999999 66788999999999999999999 789999999999999999999999998   88


Q ss_pred             ceEEecC
Q psy6206          77 DVITQDQ   83 (83)
Q Consensus        77 ~ii~~~~   83 (83)
                      +||+|+|
T Consensus       131 ~Iia~~n  137 (404)
T COG4992         131 KIIAFEN  137 (404)
T ss_pred             EEEEEcC
Confidence            9999986

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.93  E-value=6.4e-26  Score=156.31  Aligned_cols=83  Identities=42%  Similarity=0.522  Sum_probs=75.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCC-cchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRF-LHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~-~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      ++.++||+||+|++|+.+|++++ |+...+ ++++..+++++|.+.+|. +.+++||++|||||||+|||+||.+|||..
T Consensus        66 ~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~  145 (447)
T COG0160          66 AVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPG  145 (447)
T ss_pred             chhccCCCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCc
Confidence            46899999999999999999998 555444 449999999999999997 689999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|+|
T Consensus       146 viaf~~  151 (447)
T COG0160         146 VIAFDG  151 (447)
T ss_pred             EEEECC
Confidence            999986

>KOG1404|consensus

Probab=99.93  E-value=6e-26  Score=153.12  Aligned_cols=83  Identities=48%  Similarity=0.729  Sum_probs=78.7

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      |++++||+||+|++++.+|+.++ |..+.+.+++..+||+.|.+.+|++++.+||+||||||||.||||||.||++.+||
T Consensus        60 ~tvslGHchP~v~~a~~kQl~~l~H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diI  139 (442)
T KOG1404|consen   60 VTVSLGHCHPDVVAAAVKQLKKLYHTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDII  139 (442)
T ss_pred             EEEEcCCCChHHHHHHHHhhhhhEEeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEE
Confidence            57899999999999999999888 66678899999999999999999999999999999999999999999999999999


Q ss_pred             EecC
Q psy6206          80 TQDQ   83 (83)
Q Consensus        80 ~~~~   83 (83)
                      ++++
T Consensus       140 a~r~  143 (442)
T KOG1404|consen  140 ARRN  143 (442)
T ss_pred             Eeec
Confidence            9975

>PRK06062 hypothetical protein; Provisional

Probab=99.93  E-value=1.6e-25  Score=154.98  Aligned_cols=83  Identities=36%  Similarity=0.504  Sum_probs=76.2

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      |++++||+||+|++|+.+|++++ +....+.+++..+|+++|++++|.++++|+|++|||||||.|||+||.|+||++||
T Consensus        63 ~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii  142 (451)
T PRK06062         63 VNTNIGHQHPKVVAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVL  142 (451)
T ss_pred             HhhcCCCCCHHHHHHHHHHHHhcCCcCCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEE
Confidence            57899999999999999999998 33446778999999999999999878999999999999999999999999999999


Q ss_pred             EecC
Q psy6206          80 TQDQ   83 (83)
Q Consensus        80 ~~~~   83 (83)
                      +|+|
T Consensus       143 ~~~~  146 (451)
T PRK06062        143 SAYR  146 (451)
T ss_pred             EEeC
Confidence            9975

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.92  E-value=2.7e-25  Score=152.93  Aligned_cols=83  Identities=33%  Similarity=0.434  Sum_probs=74.7

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHHHhhc----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLARVHT----   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~ar~~~----   73 (83)
                      ||+++||+||+|.+|+.+|++++ +. ...+.++|..+|+++|.+++| +++++|||++|||||||.|||||++|+    
T Consensus        54 W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G  133 (449)
T COG0161          54 WCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARG  133 (449)
T ss_pred             HHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcC
Confidence            89999999999999999999999 43 456778889999999999999 559999999999999999999999995    


Q ss_pred             --CCCceEEecC
Q psy6206          74 --NNDDVITQDQ   83 (83)
Q Consensus        74 --~r~~ii~~~~   83 (83)
                        +|++||++++
T Consensus       134 ~p~r~~~Isr~~  145 (449)
T COG0161         134 QPQRKKFISRRN  145 (449)
T ss_pred             CCcceEEEEecc
Confidence              4677999864

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.92  E-value=1.8e-24  Score=149.57  Aligned_cols=83  Identities=33%  Similarity=0.474  Sum_probs=74.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++++|+++ ++|+|++|||||||+|||+||.|+||++
T Consensus        64 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~  143 (451)
T PRK06918         64 GTINVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQG  143 (451)
T ss_pred             hhcCCCCCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCc
Confidence            578999999999999999999873 32 34668899999999999999765 5999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|+|
T Consensus       144 ii~~~~  149 (451)
T PRK06918        144 IISFSR  149 (451)
T ss_pred             EEEECC
Confidence            999975

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.91  E-value=2.3e-24  Score=148.95  Aligned_cols=83  Identities=31%  Similarity=0.308  Sum_probs=74.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCC-CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNN-RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDV   78 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~i   78 (83)
                      |++++||+||+|++|+.+|++++ +... .+.+++..+|+++|++.+|.++++|+|++|||||||.|||+||.|+||++|
T Consensus        51 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~i  130 (443)
T PRK08360         51 AVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKI  130 (443)
T ss_pred             hhcccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeE
Confidence            57899999999999999999987 3332 345788899999999999987789999999999999999999999999999


Q ss_pred             EEecC
Q psy6206          79 ITQDQ   83 (83)
Q Consensus        79 i~~~~   83 (83)
                      |+|+|
T Consensus       131 i~~~~  135 (443)
T PRK08360        131 LSYLR  135 (443)
T ss_pred             EEEeC
Confidence            99874

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.91  E-value=1.9e-24  Score=149.48  Aligned_cols=83  Identities=34%  Similarity=0.431  Sum_probs=74.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc---CCC
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT---NND   76 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~---~r~   76 (83)
                      |++++||+||+|++|+.+|++++.. +..+.+++..+|+++|++.+|.++++|+|++|||||||.|+|+||.|+   ||+
T Consensus        85 ~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~  164 (442)
T TIGR03372        85 GIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKF  164 (442)
T ss_pred             HhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCc
Confidence            4789999999999999999999843 334568899999999999999878899999999999999999999996   899


Q ss_pred             ceEEecC
Q psy6206          77 DVITQDQ   83 (83)
Q Consensus        77 ~ii~~~~   83 (83)
                      +||+|+|
T Consensus       165 ~ii~~~~  171 (442)
T TIGR03372       165 TFIAASG  171 (442)
T ss_pred             EEEEECC
Confidence            9999875

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK05965 hypothetical protein; Provisional

Probab=99.91  E-value=2.3e-24  Score=149.45  Aligned_cols=83  Identities=28%  Similarity=0.384  Sum_probs=73.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCC--CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNN--RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~--~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----   72 (83)
                      |++++||+||+|++|+.+|++++. ...  .+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||.|     
T Consensus        56 ~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g  135 (459)
T PRK05965         56 WCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATG  135 (459)
T ss_pred             HhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcC
Confidence            578999999999999999999873 222  467899999999999999977899999999999999999999998     


Q ss_pred             -cCCCceEEecC
Q psy6206          73 -TNNDDVITQDQ   83 (83)
Q Consensus        73 -~~r~~ii~~~~   83 (83)
                       ++|++||+|++
T Consensus       136 ~~~r~kii~~~~  147 (459)
T PRK05965        136 RPSKKQFISLER  147 (459)
T ss_pred             CCCccEEEEecC
Confidence             45889999975

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.91  E-value=2.5e-24  Score=149.25  Aligned_cols=83  Identities=27%  Similarity=0.320  Sum_probs=73.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCC-CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNN-RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDV   78 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~i   78 (83)
                      |++++||+||+|++|+.+|++++. ... .+++++..+|+++|++.+|.+.++|+|++|||||||+|||+||.++||++|
T Consensus        63 ~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~i  142 (457)
T PRK05639         63 AAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWI  142 (457)
T ss_pred             HhhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeE
Confidence            578999999999999999999873 322 344688899999999999977789999999999999999999999999999


Q ss_pred             EEecC
Q psy6206          79 ITQDQ   83 (83)
Q Consensus        79 i~~~~   83 (83)
                      |+|+|
T Consensus       143 i~~~~  147 (457)
T PRK05639        143 LAFIG  147 (457)
T ss_pred             EEECC
Confidence            99875

>PRK07482 hypothetical protein; Provisional

Probab=99.91  E-value=4e-24  Score=148.35  Aligned_cols=83  Identities=18%  Similarity=0.250  Sum_probs=74.1

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC--CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN--NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT----   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~--~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~----   73 (83)
                      |++++||+||+|++|+.+|++++. ..  ..+++++..+|+++|++.+|.++++|+|++|||||||+|||+||+|+    
T Consensus        60 ~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g  139 (461)
T PRK07482         60 YCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLG  139 (461)
T ss_pred             hhhcCCCCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence            678999999999999999999973 22  25778999999999999999878999999999999999999999884    


Q ss_pred             --CCCceEEecC
Q psy6206          74 --NNDDVITQDQ   83 (83)
Q Consensus        74 --~r~~ii~~~~   83 (83)
                        +|++||+|+|
T Consensus       140 ~~~r~~Ii~~~~  151 (461)
T PRK07482        140 RPEKKKIISRWR  151 (461)
T ss_pred             CCCCceEEEecC
Confidence              5889999875

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.91  E-value=4.8e-24  Score=146.72  Aligned_cols=83  Identities=31%  Similarity=0.437  Sum_probs=74.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++|+.+|++++. .. ..++++...+|+++|++.+|++. ++|+|++|||||||.|||+||.++||++
T Consensus        50 ~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~  129 (425)
T PRK07495         50 AVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSA  129 (425)
T ss_pred             HhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCe
Confidence            578999999999999999999873 32 35678899999999999998754 7999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|+|
T Consensus       130 ii~~~~  135 (425)
T PRK07495        130 VIAFGG  135 (425)
T ss_pred             EEEECC
Confidence            999875

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.91  E-value=5.5e-24  Score=146.02  Aligned_cols=83  Identities=29%  Similarity=0.379  Sum_probs=74.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------   72 (83)
                      |++++||+||+|++|+.+|++++. .. ..+++++..+|+++|++.+|.++++|+|++|||||||+|+|+||.|      
T Consensus        52 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~  131 (423)
T PRK05964         52 WVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGE  131 (423)
T ss_pred             HhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999874 22 2577899999999999999977899999999999999999999998      


Q ss_pred             cCCCceEEecC
Q psy6206          73 TNNDDVITQDQ   83 (83)
Q Consensus        73 ~~r~~ii~~~~   83 (83)
                      ++|++||+|+|
T Consensus       132 ~~r~~ii~~~~  142 (423)
T PRK05964        132 PGRSRFLSLRG  142 (423)
T ss_pred             CCCcEEEEEcC
Confidence            68999999975

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.91  E-value=5.7e-24  Score=145.90  Aligned_cols=83  Identities=35%  Similarity=0.422  Sum_probs=73.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++|+.+|++++. .. ..+++++..+|+++|.+.+|. ++++|+|++|||||||+|||+||.|+||++
T Consensus        43 ~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~  122 (420)
T TIGR00700        43 AVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPG  122 (420)
T ss_pred             HhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCc
Confidence            578999999999999999999873 32 246678899999999999984 468999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|+|
T Consensus       123 ii~~~~  128 (420)
T TIGR00700       123 VVAFDH  128 (420)
T ss_pred             EEEECC
Confidence            999975

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.91  E-value=5.3e-24  Score=147.18  Aligned_cols=83  Identities=34%  Similarity=0.386  Sum_probs=74.2

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++.+|.+. ++|+|++|||||||.|||+||.++||++
T Consensus        52 ~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~  131 (445)
T PRK08593         52 SSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPY  131 (445)
T ss_pred             HhhcCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCe
Confidence            578999999999999999999873 32 24678999999999999998754 6999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|+|
T Consensus       132 ii~~~~  137 (445)
T PRK08593        132 IISFTN  137 (445)
T ss_pred             EEEECC
Confidence            999875

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.91  E-value=6.7e-24  Score=146.56  Aligned_cols=83  Identities=34%  Similarity=0.452  Sum_probs=74.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++.+|.+ +++|+|++|||||||.|+|+||.++||++
T Consensus        64 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~  143 (441)
T PRK05769         64 AVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKY  143 (441)
T ss_pred             hhcccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCe
Confidence            578999999999999999999873 32 3467889999999999999853 68999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|+|
T Consensus       144 Ii~~~~  149 (441)
T PRK05769        144 IIAFLG  149 (441)
T ss_pred             EEEECC
Confidence            999875

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.91  E-value=5.7e-24  Score=147.58  Aligned_cols=83  Identities=34%  Similarity=0.436  Sum_probs=74.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC---CC
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN---ND   76 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~---r~   76 (83)
                      |++++||+||+|++|+.+|++++.. +..+++++..+|+++|++.+|++.++|+|++|||||||.|+|+||.|++   |+
T Consensus        92 ~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~  171 (459)
T PRK11522         92 GIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKF  171 (459)
T ss_pred             HhhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCc
Confidence            5789999999999999999998843 3456788999999999999998889999999999999999999999995   77


Q ss_pred             ceEEecC
Q psy6206          77 DVITQDQ   83 (83)
Q Consensus        77 ~ii~~~~   83 (83)
                      +||+|+|
T Consensus       172 ~ii~~~~  178 (459)
T PRK11522        172 TFIATSG  178 (459)
T ss_pred             EEEEecC
Confidence            8999875

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.91  E-value=6.8e-24  Score=146.19  Aligned_cols=83  Identities=24%  Similarity=0.358  Sum_probs=74.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----c
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----T   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----~   73 (83)
                      |++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|.+++|.++++|+|++|||||||+|||+||.|     +
T Consensus        53 ~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~  132 (428)
T PRK07986         53 WAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE  132 (428)
T ss_pred             HhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999973 32 2457899999999999999987899999999999999999999998     6


Q ss_pred             CCCceEEecC
Q psy6206          74 NNDDVITQDQ   83 (83)
Q Consensus        74 ~r~~ii~~~~   83 (83)
                      +|++||+|+|
T Consensus       133 ~r~kii~~~~  142 (428)
T PRK07986        133 PRQRFLTLRH  142 (428)
T ss_pred             CCcEEEEECC
Confidence            7999999985

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.91  E-value=7.7e-24  Score=145.91  Aligned_cols=83  Identities=31%  Similarity=0.394  Sum_probs=74.4

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------   72 (83)
                      |++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||.|      
T Consensus        54 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~  133 (429)
T PRK06173         54 WAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGE  133 (429)
T ss_pred             HhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCC
Confidence            578999999999999999999973 32 3567899999999999999988899999999999999999999998      


Q ss_pred             cCCCceEEecC
Q psy6206          73 TNNDDVITQDQ   83 (83)
Q Consensus        73 ~~r~~ii~~~~   83 (83)
                      ++|++||+|+|
T Consensus       134 ~~r~~ii~~~~  144 (429)
T PRK06173        134 VQRTKFATIRS  144 (429)
T ss_pred             CCCcEEEEECC
Confidence            46889999975

>PRK07483 hypothetical protein; Provisional

Probab=99.91  E-value=8.5e-24  Score=146.14  Aligned_cols=83  Identities=31%  Similarity=0.434  Sum_probs=74.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------   72 (83)
                      |++++||+||+|++++.+|++++. .. ..+.+++..+|+++|.+.+|.++++|+|++|||||||+|||+||.|      
T Consensus        40 ~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~  119 (443)
T PRK07483         40 AVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQ  119 (443)
T ss_pred             hhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999873 22 3467889999999999999977899999999999999999999999      


Q ss_pred             cCCCceEEecC
Q psy6206          73 TNNDDVITQDQ   83 (83)
Q Consensus        73 ~~r~~ii~~~~   83 (83)
                      ++|++||+|++
T Consensus       120 ~~r~~Ii~~~~  130 (443)
T PRK07483        120 PQRRHFIARRQ  130 (443)
T ss_pred             CCCcEEEEECC
Confidence            68899999875

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.91  E-value=8.2e-24  Score=145.32  Aligned_cols=83  Identities=30%  Similarity=0.346  Sum_probs=73.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++++.+|++++. . ...+++++..+|+++|.+.+|. +.++++|++|||||||+|+|+||.++||++
T Consensus        50 ~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~  129 (421)
T PRK06777         50 AVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPG  129 (421)
T ss_pred             HhhccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCe
Confidence            568999999999999999999983 2 2345788899999999999984 578999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|+|
T Consensus       130 ii~~~~  135 (421)
T PRK06777        130 VIAFGG  135 (421)
T ss_pred             EEEEcC
Confidence            999975

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.90  E-value=1.3e-23  Score=144.98  Aligned_cols=82  Identities=30%  Similarity=0.239  Sum_probs=74.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++|+.+|++++.. ..+++++..+|+++|++.+|.+.++|+|++|||||+|.|||+||.|+||++||+
T Consensus        63 ~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~  141 (433)
T PRK00615         63 GSLIHGHSHPKICDAIQQGAERGTS-YGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIK  141 (433)
T ss_pred             hccccCCCCHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEE
Confidence            5789999999999999999998742 356788999999999999987668999999999999999999999999999999


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |++
T Consensus       142 ~~~  144 (433)
T PRK00615        142 FLG  144 (433)
T ss_pred             EcC
Confidence            875

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.90  E-value=1.1e-23  Score=146.15  Aligned_cols=83  Identities=30%  Similarity=0.422  Sum_probs=75.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      |++++||+||+|++++.+|++++. ..+.+.+++..+|+++|++.+|.+.++|+|++|||||||+|+|+||+|+||++||
T Consensus        81 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii  160 (459)
T PRK06082         81 NVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVV  160 (459)
T ss_pred             hhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEE
Confidence            468899999999999999999873 3345778999999999999998767899999999999999999999999999999


Q ss_pred             EecC
Q psy6206          80 TQDQ   83 (83)
Q Consensus        80 ~~~~   83 (83)
                      +|+|
T Consensus       161 ~~~~  164 (459)
T PRK06082        161 SLWD  164 (459)
T ss_pred             EEeC
Confidence            9975

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.90  E-value=1.8e-23  Score=143.83  Aligned_cols=83  Identities=34%  Similarity=0.404  Sum_probs=74.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDV   78 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~i   78 (83)
                      |++++||+||+|++|+.+|++++. .+ ..+.++...+|+++|++.+|++.++|+|++|||||||.|||+||.++||++|
T Consensus        53 ~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~i  132 (433)
T PRK08117         53 AVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYI  132 (433)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeE
Confidence            478999999999999999999873 22 3467888999999999999877899999999999999999999999999999


Q ss_pred             EEecC
Q psy6206          79 ITQDQ   83 (83)
Q Consensus        79 i~~~~   83 (83)
                      |+|+|
T Consensus       133 i~~~~  137 (433)
T PRK08117        133 ISFTG  137 (433)
T ss_pred             EEECC
Confidence            99975

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.90  E-value=1.3e-23  Score=145.20  Aligned_cols=83  Identities=29%  Similarity=0.427  Sum_probs=73.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT-----   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~-----   73 (83)
                      |++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++++|.++++|+|++|||||||+|+|+||.|+     
T Consensus        56 ~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~  135 (442)
T PRK13360         56 WCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGE  135 (442)
T ss_pred             HHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999873 22 34678999999999999999878999999999999999999999985     


Q ss_pred             -CCCceEEecC
Q psy6206          74 -NNDDVITQDQ   83 (83)
Q Consensus        74 -~r~~ii~~~~   83 (83)
                       +|++||+|+|
T Consensus       136 ~~r~~ii~~~~  146 (442)
T PRK13360        136 GSRTRLIGRER  146 (442)
T ss_pred             CCCcEEEEEcC
Confidence             5789999975

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.90  E-value=1.8e-23  Score=143.82  Aligned_cols=81  Identities=27%  Similarity=0.288  Sum_probs=73.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++|+.+|++++.. ..+++++..+|+++|++.+|+ .++|+|++|||||||.|+|+||.|+||++||+
T Consensus        63 ~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~  140 (428)
T PRK12389         63 GPIITGHAHPHITKAITEAAENGVL-YGTPTELEIEFAKMLKEAIPS-LEKVRFVNSGTEAVMTTIRVARAYTGRTKIIK  140 (428)
T ss_pred             cccccCCCCHHHHHHHHHHHHhCCc-cCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence            5789999999999999999998743 346788999999999999984 78999999999999999999999999999999


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |++
T Consensus       141 ~~~  143 (428)
T PRK12389        141 FAG  143 (428)
T ss_pred             ECC
Confidence            875

>PRK06917 hypothetical protein; Provisional

Probab=99.90  E-value=2e-23  Score=144.44  Aligned_cols=83  Identities=29%  Similarity=0.424  Sum_probs=73.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------   72 (83)
                      |++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||+|      
T Consensus        41 ~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~  120 (447)
T PRK06917         41 VTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGI  120 (447)
T ss_pred             HhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999873 22 3467899999999999999987789999999999999999999887      


Q ss_pred             cCCCceEEecC
Q psy6206          73 TNNDDVITQDQ   83 (83)
Q Consensus        73 ~~r~~ii~~~~   83 (83)
                      ++|++||+|+|
T Consensus       121 t~r~~ii~~~~  131 (447)
T PRK06917        121 QGKHKILSRWM  131 (447)
T ss_pred             CCCCEEEEECC
Confidence            67899999975

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.90  E-value=2.3e-23  Score=143.15  Aligned_cols=83  Identities=31%  Similarity=0.392  Sum_probs=73.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++++.+|++++. . ...+.+++..+|+++|++.+|. +.++++|++|||||||.|||+||.++||++
T Consensus        50 ~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~  129 (421)
T PRK09792         50 AVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPG  129 (421)
T ss_pred             hhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCe
Confidence            578999999999999999999873 2 2346788999999999999884 457999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|+|
T Consensus       130 ii~~~~  135 (421)
T PRK09792        130 VIAFSG  135 (421)
T ss_pred             EEEECC
Confidence            999975

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.90  E-value=1.9e-23  Score=145.19  Aligned_cols=83  Identities=23%  Similarity=0.406  Sum_probs=74.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------   72 (83)
                      |++++||+||+|++++.+|++++ +.. ..+.+++..+|+++|++++|.++++|+|++|||||||+|||+||.|      
T Consensus        57 ~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~  136 (466)
T PRK07030         57 WVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGK  136 (466)
T ss_pred             HhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCC
Confidence            57899999999999999999997 332 3577899999999999999977889999999999999999999998      


Q ss_pred             cCCCceEEecC
Q psy6206          73 TNNDDVITQDQ   83 (83)
Q Consensus        73 ~~r~~ii~~~~   83 (83)
                      ++|++||+|+|
T Consensus       137 t~r~~ii~~~~  147 (466)
T PRK07030        137 PRKKRFVTLTN  147 (466)
T ss_pred             CCCcEEEEECC
Confidence            57889999975

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.90  E-value=1.7e-23  Score=144.00  Aligned_cols=83  Identities=25%  Similarity=0.378  Sum_probs=73.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT-----   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~-----   73 (83)
                      |++++||+||+|++++.+|++++. .. ..+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||+|+     
T Consensus        50 ~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~  129 (422)
T PRK05630         50 WSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGH  129 (422)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999873 32 24678899999999999998778999999999999999999999985     


Q ss_pred             -CCCceEEecC
Q psy6206          74 -NNDDVITQDQ   83 (83)
Q Consensus        74 -~r~~ii~~~~   83 (83)
                       +|++||+|+|
T Consensus       130 ~~r~~ii~~~~  140 (422)
T PRK05630        130 PERTRLLTWRS  140 (422)
T ss_pred             CCCcEEEEECC
Confidence             6888999875

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.90  E-value=2.4e-23  Score=145.00  Aligned_cols=81  Identities=25%  Similarity=0.230  Sum_probs=73.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++++.+|++++.. ...++++..+|+++|++.+|+ .++|+|++|||||+|.|||+||.||||++||+
T Consensus       109 g~~~lGh~~p~v~~av~~ql~~~~~-~~~~~~~~~~lAe~l~~~~p~-~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~  186 (474)
T PLN02482        109 GPAIIGHADDEVLAALAETMKKGTS-FGAPCLLENVLAEMVIDAVPS-VEMVRFVNSGTEACMGVLRLARAYTGREKIIK  186 (474)
T ss_pred             cccccCCCCHHHHHHHHHHHhhCCC-CCCCCHHHHHHHHHHHHhCCC-CCEEEEeCChHHHHHHHHHHHHHhcCCCEEEE
Confidence            4678999999999999999998743 345788999999999999986 88999999999999999999999999999999


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |+|
T Consensus       187 ~~g  189 (474)
T PLN02482        187 FEG  189 (474)
T ss_pred             ECC
Confidence            975

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.90  E-value=2.5e-23  Score=144.37  Aligned_cols=83  Identities=23%  Similarity=0.317  Sum_probs=74.0

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------   72 (83)
                      |++++||+||+|++|+.+|++++. .. ..+.+++..+|+++|.+.+|.++++|+|++|||||||.|||+||.|      
T Consensus        66 ~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~  145 (460)
T PRK06916         66 WLNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGK  145 (460)
T ss_pred             HHhhcCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            467899999999999999999973 32 3467899999999999999987889999999999999999999986      


Q ss_pred             cCCCceEEecC
Q psy6206          73 TNNDDVITQDQ   83 (83)
Q Consensus        73 ~~r~~ii~~~~   83 (83)
                      ++|++||+|+|
T Consensus       146 tgr~~ii~~~~  156 (460)
T PRK06916        146 PKKQRFVTLKN  156 (460)
T ss_pred             CCCcEEEEECC
Confidence            67899999985

>PRK07481 hypothetical protein; Provisional

Probab=99.90  E-value=2.4e-23  Score=144.11  Aligned_cols=83  Identities=25%  Similarity=0.350  Sum_probs=73.1

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC--CCCcchHHHHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHHHhhc---
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN--NRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLARVHT---   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~--~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~ar~~~---   73 (83)
                      |++++||+||+|++|+.+|++++. ..  ..+.+++..+|+++|++.+| .++++|+|++|||||||+|||+||.|+   
T Consensus        52 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~  131 (449)
T PRK07481         52 WNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVR  131 (449)
T ss_pred             HhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999873 22  24678999999999999984 567899999999999999999999985   


Q ss_pred             ---CCCceEEecC
Q psy6206          74 ---NNDDVITQDQ   83 (83)
Q Consensus        74 ---~r~~ii~~~~   83 (83)
                         +|++||+|+|
T Consensus       132 g~~~r~~ii~~~~  144 (449)
T PRK07481        132 GQPERTKFISLKQ  144 (449)
T ss_pred             CCCCCcEEEEECC
Confidence               6889999985

>PRK06148 hypothetical protein; Provisional

Probab=99.90  E-value=2.6e-23  Score=154.43  Aligned_cols=82  Identities=60%  Similarity=0.844  Sum_probs=75.2

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           2 SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +.++||+||+|++|+.+|++++.....+.++...+|+++|++.+|+++++|+|+||||||||.|||+||.+|||++||+|
T Consensus       633 ~~~lGH~hp~v~~Ai~~q~~~l~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~  712 (1013)
T PRK06148        633 VCHVGHAHPRVVAAAARQAARLNTNTRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVL  712 (1013)
T ss_pred             hhhcCCCCHHHHHHHHHHHhhcCCcCCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence            36899999999999999999884444678899999999999999987899999999999999999999999999999999


Q ss_pred             cC
Q psy6206          82 DQ   83 (83)
Q Consensus        82 ~~   83 (83)
                      +|
T Consensus       713 ~~  714 (1013)
T PRK06148        713 DH  714 (1013)
T ss_pred             cC
Confidence            75

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.90  E-value=3.5e-23  Score=143.14  Aligned_cols=83  Identities=33%  Similarity=0.426  Sum_probs=73.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT-----   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~-----   73 (83)
                      |++++||+||+|++++.+|++++. .. ..+.+++..+|+++|.+.+|.++++|+|++|||||||+|+|+||.|+     
T Consensus        59 ~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~  138 (445)
T PRK09221         59 WCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQ  138 (445)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999873 22 24678999999999999999778999999999999999999999985     


Q ss_pred             -CCCceEEecC
Q psy6206          74 -NNDDVITQDQ   83 (83)
Q Consensus        74 -~r~~ii~~~~   83 (83)
                       +|++||+|+|
T Consensus       139 ~~r~~ii~~~~  149 (445)
T PRK09221        139 GTRTRLIGRER  149 (445)
T ss_pred             CCCcEEEEECC
Confidence             4778999875

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.90  E-value=3.5e-23  Score=142.96  Aligned_cols=83  Identities=22%  Similarity=0.252  Sum_probs=71.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCCC---CCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPDP---LSVCFFVNSGSEANDLALRLARVHTNN   75 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~~---~~~v~f~~sGseA~e~Alk~ar~~~~r   75 (83)
                      |++++||+||+|++++.+|++++ +.. ..++++...+|+++|++++|.+   ...+||++|||||||.|||+||.|+||
T Consensus        49 ~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr  128 (442)
T TIGR00709        49 GTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGR  128 (442)
T ss_pred             hhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCC
Confidence            57899999999999999999986 333 2467889999999999999853   345677899999999999999999999


Q ss_pred             CceEEecC
Q psy6206          76 DDVITQDQ   83 (83)
Q Consensus        76 ~~ii~~~~   83 (83)
                      ++||+|+|
T Consensus       129 ~~Ii~~~~  136 (442)
T TIGR00709       129 TNVISFSG  136 (442)
T ss_pred             CeEEEEcC
Confidence            99999875

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK07036 hypothetical protein; Provisional

Probab=99.90  E-value=3.6e-23  Score=143.77  Aligned_cols=83  Identities=27%  Similarity=0.290  Sum_probs=73.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-C-CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-N-RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----   72 (83)
                      |++++||+||+|++|+.+|++++. .. . .+.+++..+|+++|.+.+|.++++|+|++|||||||.|||+||.|     
T Consensus        61 ~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g  140 (466)
T PRK07036         61 WCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRG  140 (466)
T ss_pred             HhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcC
Confidence            578999999999999999999873 22 2 267899999999999999988899999999999999999999998     


Q ss_pred             -cCCCceEEecC
Q psy6206          73 -TNNDDVITQDQ   83 (83)
Q Consensus        73 -~~r~~ii~~~~   83 (83)
                       ++|++||+|+|
T Consensus       141 ~t~r~~Ii~~~~  152 (466)
T PRK07036        141 RPAKKHIITRGD  152 (466)
T ss_pred             CCCccEEEEEcC
Confidence             45889999875

>PRK07678 aminotransferase; Validated

Probab=99.89  E-value=3.8e-23  Score=143.18  Aligned_cols=82  Identities=32%  Similarity=0.344  Sum_probs=72.7

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------   73 (83)
                      |++++||+||+|++|+.+|++++. ....+++++..+|+++|++.+|. .++|+|++|||||||.|||+||.|+      
T Consensus        57 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~lae~l~~~~~~-~~~v~f~~sGseA~e~AlklAr~~t~~~g~~  135 (451)
T PRK07678         57 WCVNVGYGRKELAEAAYEQLKTLSYFPLTQSHEPAIKLAEKLNEWLGG-EYVIFFSNSGSEANETAFKIARQYHAQKGEP  135 (451)
T ss_pred             HhhcCCCCCHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHHhCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            578999999999999999999884 33356788999999999999986 4699999999999999999999996      


Q ss_pred             CCCceEEecC
Q psy6206          74 NNDDVITQDQ   83 (83)
Q Consensus        74 ~r~~ii~~~~   83 (83)
                      +|++||+|+|
T Consensus       136 ~r~~ii~~~~  145 (451)
T PRK07678        136 HRYKFISRYR  145 (451)
T ss_pred             CCcEEEEECC
Confidence            6889999875

>PRK07480 putative aminotransferase; Validated

Probab=99.89  E-value=3.9e-23  Score=143.30  Aligned_cols=83  Identities=33%  Similarity=0.409  Sum_probs=73.7

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC--CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN--NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~--~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----   72 (83)
                      |++++||+||+|++|+.+|++++. ..  ..+.+++..+|+++|.+.+|.++++|+|++|||||||+|||+||.|     
T Consensus        60 ~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g  139 (456)
T PRK07480         60 WCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKG  139 (456)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence            568999999999999999999873 22  2467899999999999999987899999999999999999999998     


Q ss_pred             -cCCCceEEecC
Q psy6206          73 -TNNDDVITQDQ   83 (83)
Q Consensus        73 -~~r~~ii~~~~   83 (83)
                       ++|++||+|+|
T Consensus       140 ~~~r~~ii~~~~  151 (456)
T PRK07480        140 KPQKKVIISRKN  151 (456)
T ss_pred             CCCCcEEEEECC
Confidence             56889999875

>PRK06541 hypothetical protein; Provisional

Probab=99.89  E-value=3.9e-23  Score=143.46  Aligned_cols=83  Identities=30%  Similarity=0.397  Sum_probs=74.0

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT-----   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~-----   73 (83)
                      |++++||+||+|++|+.+|++++. . ...+.+++..+|+++|.+++|.++++|+|++|||||||+|||+||.|+     
T Consensus        62 ~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~  141 (460)
T PRK06541         62 FVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGK  141 (460)
T ss_pred             HhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999873 2 235778999999999999999878999999999999999999999983     


Q ss_pred             -CCCceEEecC
Q psy6206          74 -NNDDVITQDQ   83 (83)
Q Consensus        74 -~r~~ii~~~~   83 (83)
                       +|++||+|+|
T Consensus       142 ~~r~~ii~~~~  152 (460)
T PRK06541        142 PGKHKVISRAI  152 (460)
T ss_pred             CCccEEEEEcC
Confidence             5889999975

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.89  E-value=4.9e-23  Score=143.37  Aligned_cols=83  Identities=27%  Similarity=0.404  Sum_probs=73.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCC-----CCCeEEeeCChHHHHHHHHHHHHhh-
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPD-----PLSVCFFVNSGSEANDLALRLARVH-   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~-----~~~~v~f~~sGseA~e~Alk~ar~~-   72 (83)
                      |++++||+||+|++|+.+|++++ +.. ..+.+++..+|+++|.+.+|.     ++++|+|++|||||||+|||+||+| 
T Consensus        74 ~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~  153 (472)
T PRK08742         74 WTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYF  153 (472)
T ss_pred             HhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHH
Confidence            57899999999999999999987 332 357789999999999999985     4689999999999999999999999 


Q ss_pred             -----cCCCceEEecC
Q psy6206          73 -----TNNDDVITQDQ   83 (83)
Q Consensus        73 -----~~r~~ii~~~~   83 (83)
                           ++|++||+|+|
T Consensus       154 ~~~g~~~r~~ii~~~~  169 (472)
T PRK08742        154 HNRGEHRRTRFIALEN  169 (472)
T ss_pred             HhcCCCCCcEEEEECC
Confidence                 56889999975

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.89  E-value=3.6e-23  Score=138.94  Aligned_cols=83  Identities=39%  Similarity=0.542  Sum_probs=74.1

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH------hh
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR------VH   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar------~~   72 (83)
                      |++++||+||+|.+++.+|++++. .. ..+.+++..+|+++|.+.+|.+.++|+|++|||||||+|||+||      ..
T Consensus        26 ~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~  105 (339)
T PF00202_consen   26 GSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAY  105 (339)
T ss_dssp             HTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHH
T ss_pred             cceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccc
Confidence            478999999999999999999983 33 57889999999999999999889999999999999999999999      77


Q ss_pred             cCCCceEEecC
Q psy6206          73 TNNDDVITQDQ   83 (83)
Q Consensus        73 ~~r~~ii~~~~   83 (83)
                      ++|++||+|+|
T Consensus       106 ~~r~~il~~~~  116 (339)
T PF00202_consen  106 TGRRKILAFEG  116 (339)
T ss_dssp             HTTTEEEEETT
T ss_pred             cCCceEEEeee
Confidence            89999999975

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK06105 aminotransferase; Provisional

Probab=99.89  E-value=5.8e-23  Score=142.54  Aligned_cols=83  Identities=31%  Similarity=0.459  Sum_probs=73.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-c--CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-T--NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~--~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----   72 (83)
                      |++++||+||+|++|+.+|++++. .  .+.+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||++     
T Consensus        58 ~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g  137 (460)
T PRK06105         58 WSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALG  137 (460)
T ss_pred             HhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcC
Confidence            578999999999999999999873 2  22467899999999999999987899999999999999999999987     


Q ss_pred             -cCCCceEEecC
Q psy6206          73 -TNNDDVITQDQ   83 (83)
Q Consensus        73 -~~r~~ii~~~~   83 (83)
                       ++|++||+|++
T Consensus       138 ~t~r~~il~~~~  149 (460)
T PRK06105        138 RPEKKKIISRQR  149 (460)
T ss_pred             CCCCcEEEEecC
Confidence             46889999875

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.89  E-value=6.7e-23  Score=142.06  Aligned_cols=83  Identities=23%  Similarity=0.331  Sum_probs=73.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------   72 (83)
                      |++++||+||+|++++.+|++++ +. ...+.+++..+|+++|++.+|.++++|+|++|||||||+|||+||+|      
T Consensus        64 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~  143 (453)
T PRK06943         64 WVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGR  143 (453)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCC
Confidence            57899999999999999999997 33 23577899999999999999877789999999999999999999876      


Q ss_pred             cCCCceEEecC
Q psy6206          73 TNNDDVITQDQ   83 (83)
Q Consensus        73 ~~r~~ii~~~~   83 (83)
                      ++|++||+|++
T Consensus       144 ~~r~~Ii~~~~  154 (453)
T PRK06943        144 GDKREFVCLAN  154 (453)
T ss_pred             CCCCEEEEECC
Confidence            46889999975

>PRK07046 aminotransferase; Validated

Probab=99.89  E-value=9.6e-23  Score=141.29  Aligned_cols=80  Identities=20%  Similarity=0.224  Sum_probs=72.4

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++++.+|++++.. ..++++...+|+++|++.+|  .++|+|++|||||+|.|+|+||.||||++||+
T Consensus        85 g~~~lGh~~p~i~~Av~~q~~~~~~-~~~~~~~~~~lAe~l~~~~~--~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~  161 (453)
T PRK07046         85 TGAMFGHSPAPVARALAEQARRGLT-TMLPSEDAAWVGEELARRFG--LPYWQVATTATDANRFVLRWARAVTGRPKILV  161 (453)
T ss_pred             cccccCCCCHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHHHHHHhhCCCEEEE
Confidence            4788999999999999999998733 34678999999999999884  78999999999999999999999999999999


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |+|
T Consensus       162 ~~g  164 (453)
T PRK07046        162 FNG  164 (453)
T ss_pred             ECC
Confidence            875

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.89  E-value=1.1e-22  Score=140.47  Aligned_cols=83  Identities=30%  Similarity=0.333  Sum_probs=73.1

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-CCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-NRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++++.+|++++. .. ..+++++..+|+++|++.+|.. .++++|++|||||||.|+|+||.++||++
T Consensus        66 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~  145 (443)
T PRK06058         66 AVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQA  145 (443)
T ss_pred             hhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCe
Confidence            578999999999999999999873 22 2356788899999999999854 46999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|++
T Consensus       146 ii~~~~  151 (443)
T PRK06058        146 VVVFDH  151 (443)
T ss_pred             EEEECC
Confidence            999875

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.89  E-value=1.3e-22  Score=139.11  Aligned_cols=82  Identities=28%  Similarity=0.338  Sum_probs=71.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc---C--
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT---N--   74 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~---~--   74 (83)
                      |++++||+||+|++++.+|++++ +....+.+++..+|+++|++.+|. .++|+|++|||||||.|||+||.|+   |  
T Consensus        50 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~-~~~v~f~~sGseA~e~AlklAr~~~~~~g~~  128 (408)
T PRK04612         50 AVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRF-AEKVFLCNSGTEANEAAIKLVRKWASSQGRP  128 (408)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCCC-CCEEEEcCchHHHHHHHHHHHHHHHHhhCCC
Confidence            57899999999999999999987 333446788999999999999875 4899999999999999999999984   3  


Q ss_pred             --CCceEEecC
Q psy6206          75 --NDDVITQDQ   83 (83)
Q Consensus        75 --r~~ii~~~~   83 (83)
                        |++||+|+|
T Consensus       129 ~~r~~ii~~~~  139 (408)
T PRK04612        129 ADKRVIVTFRG  139 (408)
T ss_pred             CCCcEEEEECC
Confidence              667999875

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.88  E-value=1.4e-22  Score=140.05  Aligned_cols=83  Identities=22%  Similarity=0.266  Sum_probs=71.9

Q ss_pred             CccCCCCCCHHHHH--HHHHHHHhhc--c-C-CCCcchHHHHHHHHHHhhC-CCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206           1 MSLPVGHCHPAVVK--AACTQLALLN--T-N-NRFLHDNLVLCARKLASLL-PDPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~--a~~~~~~~~~--~-~-~~~~~~~~~~la~~l~~~~-p~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      |++++||+||+|++  ++.+|++++.  . . ..+.+++..+|+++|.+.+ |.++++|+|++|||||||.|||+||+|+
T Consensus        55 ~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~  134 (443)
T PRK08297         55 ASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWK  134 (443)
T ss_pred             hhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHh
Confidence            57899999999999  9999998863  1 2 2467889999999999998 6678999999999999999999999883


Q ss_pred             -------C-----CCceEEecC
Q psy6206          74 -------N-----NDDVITQDQ   83 (83)
Q Consensus        74 -------~-----r~~ii~~~~   83 (83)
                             |     |++||+|+|
T Consensus       135 ~~~~~~~g~~~~~r~kii~~~~  156 (443)
T PRK08297        135 SRKNEARGIDPALGTKVLHLRG  156 (443)
T ss_pred             hccccccCCCCCCCceEEEECC
Confidence                   3     578999975

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.88  E-value=1.8e-22  Score=136.81  Aligned_cols=81  Identities=27%  Similarity=0.365  Sum_probs=73.2

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      |+.++||+||+|++++.+|++++ +....+++++..+|+++|++.+  +.++++|++|||||+|.|+|+||.++||++||
T Consensus        34 ~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~--~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii  111 (364)
T PRK04013         34 GVNVLGHNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWV--NYEYVYMGNSGTEAVEAALKFARLYTGRKEII  111 (364)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhc--CCCEEEEeCchHHHHHHHHHHHHHHhCCCEEE
Confidence            57899999999999999999997 4444678899999999999988  46799999999999999999999999999999


Q ss_pred             EecC
Q psy6206          80 TQDQ   83 (83)
Q Consensus        80 ~~~~   83 (83)
                      +|++
T Consensus       112 ~~~~  115 (364)
T PRK04013        112 AMTN  115 (364)
T ss_pred             EECC
Confidence            9874

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.88  E-value=2.1e-22  Score=139.80  Aligned_cols=83  Identities=27%  Similarity=0.285  Sum_probs=71.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCCCCC---CeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLPDPL---SVCFFVNSGSEANDLALRLARVHTNN   75 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p~~~---~~v~f~~sGseA~e~Alk~ar~~~~r   75 (83)
                      |++++||+||+|++++.+|+++. +. ...++++...+|+++|++.+|+..   ..+||++|||||||.|||+||.|+||
T Consensus        68 ~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr  147 (459)
T PRK06931         68 GTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGR  147 (459)
T ss_pred             hhccCCCCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCC
Confidence            57899999999999999999874 33 234678889999999999998543   35677899999999999999999999


Q ss_pred             CceEEecC
Q psy6206          76 DDVITQDQ   83 (83)
Q Consensus        76 ~~ii~~~~   83 (83)
                      ++||+|+|
T Consensus       148 ~~Ii~~~~  155 (459)
T PRK06931        148 SNVISFSG  155 (459)
T ss_pred             CeEEEECC
Confidence            99999975

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.88  E-value=2.7e-22  Score=137.95  Aligned_cols=83  Identities=22%  Similarity=0.226  Sum_probs=70.0

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhC--CCCCC-eEEe-eCChHHHHHHHHHHHHhhcC
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLL--PDPLS-VCFF-VNSGSEANDLALRLARVHTN   74 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~--p~~~~-~v~f-~~sGseA~e~Alk~ar~~~~   74 (83)
                      |++++||+||+|++++.+|++++ +. ...+.+++..+|+++|.+.+  |.+.+ +++| ++|||||||.|||+||.|+|
T Consensus        49 ~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tg  128 (425)
T PRK09264         49 GALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTG  128 (425)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcC
Confidence            57899999999999999999975 32 23456788999999999975  43454 6766 58999999999999999999


Q ss_pred             CCceEEecC
Q psy6206          75 NDDVITQDQ   83 (83)
Q Consensus        75 r~~ii~~~~   83 (83)
                      |++||+|+|
T Consensus       129 r~~ii~~~~  137 (425)
T PRK09264        129 RTNIVAFTN  137 (425)
T ss_pred             CCeEEEECC
Confidence            999999875

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.88  E-value=2.9e-22  Score=139.26  Aligned_cols=83  Identities=24%  Similarity=0.314  Sum_probs=71.7

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCCCCC---CeEEee-CChHHHHHHHHHHHHhhcC
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLPDPL---SVCFFV-NSGSEANDLALRLARVHTN   74 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p~~~---~~v~f~-~sGseA~e~Alk~ar~~~~   74 (83)
                      |++++||+||+|++++.+|+++. +. ...+.++...+|+++|.+.+|.++   ++++|+ +|||||||.|||+||.++|
T Consensus        73 ~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tg  152 (464)
T PRK06938         73 GTLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATG  152 (464)
T ss_pred             cccccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhC
Confidence            57899999999999999999754 33 235678999999999999998654   378676 8999999999999999999


Q ss_pred             CCceEEecC
Q psy6206          75 NDDVITQDQ   83 (83)
Q Consensus        75 r~~ii~~~~   83 (83)
                      |++||+|+|
T Consensus       153 r~~ii~~~~  161 (464)
T PRK06938        153 RSTVLSFQG  161 (464)
T ss_pred             CCeEEEECC
Confidence            999999875

>PLN00144 acetylornithine transaminase

Probab=99.88  E-value=2.5e-22  Score=136.60  Aligned_cols=81  Identities=28%  Similarity=0.356  Sum_probs=70.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN-----   74 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~-----   74 (83)
                      |++++||+||+|++++.+|++++. ....+.+++..+|+++|++..|  .++|+|++|||||||.|+|+||.|++     
T Consensus        25 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~f~~sGseA~e~AlklAr~~~~~~~~~  102 (382)
T PLN00144         25 AVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSF--ADRVFFCNSGTEANEAAIKFARKYQRVRAPD  102 (382)
T ss_pred             HhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCC--CCeEEEeCCcHHHHHHHHHHHHHHHhccCCC
Confidence            478999999999999999999873 3334568889999999999875  56999999999999999999999986     


Q ss_pred             --------CCceEEecC
Q psy6206          75 --------NDDVITQDQ   83 (83)
Q Consensus        75 --------r~~ii~~~~   83 (83)
                              |++||+|++
T Consensus       103 ~~~~~~~~r~~ii~~~~  119 (382)
T PLN00144        103 KKDPAASSATEFVSFSN  119 (382)
T ss_pred             CccccccccceEEEECC
Confidence                    568999875

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.88  E-value=3.5e-22  Score=137.64  Aligned_cols=79  Identities=27%  Similarity=0.245  Sum_probs=69.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++|+.+|++++.. ...+++...+|+++|.+++|. .++|+|++|||||||+|+|+||.|+||++|++
T Consensus        58 ~~~~lGh~~p~v~~Ai~~q~~~~~~-~~~~~~~~~~la~~l~~~~p~-~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~  135 (431)
T PRK06209         58 RAVGLGHAYPPVVEAVREALQDGCN-FTRPSAIELDAAESFLELIDG-ADMVKFCKNGSDATSAAVRLARAYTGRDLVAR  135 (431)
T ss_pred             cchhcCCCCHHHHHHHHHHHHhCcC-CCCCCHHHHHHHHHHHHhCCc-cceEEEecCHHHHHHHHHHHHHHHhCCCeEEE
Confidence            5789999999999999999998743 234556667899999999985 67999999999999999999999999999998


Q ss_pred             e
Q psy6206          81 Q   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus       136 ~  136 (431)
T PRK06209        136 C  136 (431)
T ss_pred             e
Confidence            7

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.87  E-value=4.6e-22  Score=137.07  Aligned_cols=83  Identities=25%  Similarity=0.316  Sum_probs=71.1

Q ss_pred             CccCCCCCCHHHH--HHHHHHHHhhc----cCCCCcchHHHHHHHHHHhhC-CCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206           1 MSLPVGHCHPAVV--KAACTQLALLN----TNNRFLHDNLVLCARKLASLL-PDPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~--~a~~~~~~~~~----~~~~~~~~~~~~la~~l~~~~-p~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      |++++||+||+|+  +|+.+|++++.    ....+.+++..+++++|.+.+ |.++++|+|++|||||||+|||+||+|+
T Consensus        48 ~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t  127 (431)
T TIGR03251        48 ASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWK  127 (431)
T ss_pred             hhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHh
Confidence            5789999999999  99999999862    122466788899999999987 5678999999999999999999999996


Q ss_pred             C------------CCceEEecC
Q psy6206          74 N------------NDDVITQDQ   83 (83)
Q Consensus        74 ~------------r~~ii~~~~   83 (83)
                      +            |++||+|+|
T Consensus       128 ~~~~~~~g~~~~~~~~ii~~~~  149 (431)
T TIGR03251       128 SRHNQARGIPAALGTQVLHLRQ  149 (431)
T ss_pred             hcchhhcCCCCCCCceEEEECC
Confidence            3            468999975

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.87  E-value=4.6e-22  Score=138.27  Aligned_cols=73  Identities=27%  Similarity=0.267  Sum_probs=60.5

Q ss_pred             CccCCCCCCHHHHHHHHHH--HHhhccCCCCcchHHHHHHHHHH----hhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206           1 MSLPVGHCHPAVVKAACTQ--LALLNTNNRFLHDNLVLCARKLA----SLLPDPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~--~~~~~~~~~~~~~~~~~la~~l~----~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      |++++||+||+|++|+.+|  ...+.....+.+++..+++++|.    +++|.++++|+|++|||||||+|||+||.|+
T Consensus        68 ~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~~~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~  146 (464)
T TIGR00699        68 SSIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYY  146 (464)
T ss_pred             hhhcCCCCCHHHHHHHHHHHHHHhhcccccCCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH
Confidence            5789999999999999985  44443223467788888999975    4788778999999999999999999999884

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.87  E-value=7e-22  Score=135.32  Aligned_cols=81  Identities=37%  Similarity=0.381  Sum_probs=74.2

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      +.+.+||+||.|++|+.+|+++... .+.|++...++++.|++..|. .++|.|+||||||+..|||+||.||||++||.
T Consensus        63 Gp~ilGH~~p~V~~Av~~~l~~G~~-fg~Pte~Ei~~Aell~~~~p~-~e~vrfvnSGTEAtmsAiRlARa~TgR~kIik  140 (432)
T COG0001          63 GPLILGHAHPAVVEAVQEQLERGLS-FGAPTELEVELAELLIERVPS-IEKVRFVNSGTEATMSAIRLARAYTGRDKIIK  140 (432)
T ss_pred             cccccCCCCHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHhcCc-ccEEEEecchhHHHHHHHHHHHHhhCCCeEEE
Confidence            3578999999999999999999732 356899999999999999986 78999999999999999999999999999999


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |+|
T Consensus       141 F~G  143 (432)
T COG0001         141 FEG  143 (432)
T ss_pred             EcC
Confidence            987

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.87  E-value=6.8e-22  Score=135.57  Aligned_cols=83  Identities=23%  Similarity=0.250  Sum_probs=69.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhC--CCCCC-eEEe-eCChHHHHHHHHHHHHhhcC
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLL--PDPLS-VCFF-VNSGSEANDLALRLARVHTN   74 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~--p~~~~-~v~f-~~sGseA~e~Alk~ar~~~~   74 (83)
                      |++++||+||+|++|+.+|+++. +.. ..+.+++..+|+++|.+.+  |.+.. +++| ++|||||||.|+|+||.++|
T Consensus        45 ~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tg  124 (412)
T TIGR02407        45 GALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTG  124 (412)
T ss_pred             hhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcC
Confidence            57899999999999999999875 322 3456888999999999985  43343 6655 59999999999999999999


Q ss_pred             CCceEEecC
Q psy6206          75 NDDVITQDQ   83 (83)
Q Consensus        75 r~~ii~~~~   83 (83)
                      |++||+|+|
T Consensus       125 r~~ii~~~~  133 (412)
T TIGR02407       125 RSNVVSFTN  133 (412)
T ss_pred             CCeEEEECC
Confidence            999999875

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK06149 hypothetical protein; Provisional

Probab=99.87  E-value=1.2e-21  Score=145.21  Aligned_cols=81  Identities=46%  Similarity=0.644  Sum_probs=74.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206           3 LPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD   82 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~   82 (83)
                      .++||+||+|++|+.+|++++.+.+.+.++...+|+++|++.+|.+.++|+|++|||||||.|||+||.++||++||+|+
T Consensus       595 ~~lGh~hp~v~~Ai~~q~~~l~~~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~  674 (972)
T PRK06149        595 TVLGHGHPRLAAAAARQWSLLNTNSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVL  674 (972)
T ss_pred             cccCCCCHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            47999999999999999998854445677889999999999999888999999999999999999999999999999997


Q ss_pred             C
Q psy6206          83 Q   83 (83)
Q Consensus        83 ~   83 (83)
                      +
T Consensus       675 ~  675 (972)
T PRK06149        675 E  675 (972)
T ss_pred             C
Confidence            5

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.86  E-value=1.6e-21  Score=136.65  Aligned_cols=83  Identities=28%  Similarity=0.375  Sum_probs=71.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhcc-CC--CCcchHHHHHHHHHHhhC-CCCCCeEEeeCChHHHHHHHHHHHHhhc---
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNT-NN--RFLHDNLVLCARKLASLL-PDPLSVCFFVNSGSEANDLALRLARVHT---   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~--~~~~~~~~~la~~l~~~~-p~~~~~v~f~~sGseA~e~Alk~ar~~~---   73 (83)
                      |+.++||+||+|++|+.+|++++.. ..  .+++++..+|+++|.+.+ |.++++|+|++|||||||.|||+||.|+   
T Consensus        99 ~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~  178 (504)
T PLN02760         99 WCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNAL  178 (504)
T ss_pred             HhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999998732 22  357889999999999985 5567899999999999999999999873   


Q ss_pred             ---CCCceEEecC
Q psy6206          74 ---NNDDVITQDQ   83 (83)
Q Consensus        74 ---~r~~ii~~~~   83 (83)
                         +|++||+|++
T Consensus       179 g~~~r~~iI~~~~  191 (504)
T PLN02760        179 GRPNKKKFIARSK  191 (504)
T ss_pred             CCCCCcEEEEECC
Confidence               5789999975

>PRK12403 putative aminotransferase; Provisional

Probab=99.86  E-value=3.2e-21  Score=133.87  Aligned_cols=83  Identities=28%  Similarity=0.291  Sum_probs=70.4

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhcc-CC--CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc---C
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNT-NN--RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT---N   74 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~--~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~---~   74 (83)
                      |+.++||+||+|++|+.+|++++.. ..  ...+++..+|+++|++.+|.++++|+|++|||||||+|||+||+|+   |
T Consensus        64 ~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g  143 (460)
T PRK12403         64 WCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLG  143 (460)
T ss_pred             HhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhC
Confidence            5688999999999999999999742 22  3467889999999999999777899999999999999999999983   4


Q ss_pred             ---CCceEEecC
Q psy6206          75 ---NDDVITQDQ   83 (83)
Q Consensus        75 ---r~~ii~~~~   83 (83)
                         |..||+|.+
T Consensus       144 ~~~r~~ii~~~~  155 (460)
T PRK12403        144 KPQKKIMIGRWN  155 (460)
T ss_pred             CCCCcEEEEECC
Confidence               456777754

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.85  E-value=4.1e-21  Score=132.28  Aligned_cols=83  Identities=27%  Similarity=0.355  Sum_probs=73.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT-----   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~-----   73 (83)
                      |++++||+||+|++++.+|++++. . ...++++...+++++|.+.+|.++++|+|++|||||+|.|+|+||.|+     
T Consensus        55 ~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~  134 (427)
T TIGR00508        55 WAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGE  134 (427)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCC
Confidence            467999999999999999999873 2 234678899999999999999888999999999999999999999985     


Q ss_pred             -CCCceEEecC
Q psy6206          74 -NNDDVITQDQ   83 (83)
Q Consensus        74 -~r~~ii~~~~   83 (83)
                       +|++||+|++
T Consensus       135 ~~r~~il~~~~  145 (427)
T TIGR00508       135 KNRQKFLTIRS  145 (427)
T ss_pred             CCccEEEEEcC
Confidence             5889999975

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>KOG1401|consensus

Probab=99.84  E-value=1.4e-20  Score=127.71  Aligned_cols=83  Identities=30%  Similarity=0.440  Sum_probs=72.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHHHhhcCCCc-
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLARVHTNNDD-   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~-   77 (83)
                      |+..+||+||++.+++.+|+.++ |..+.+.+.+..+|+++|.+.+. ...++|||+||||||||.|||+||+++++++ 
T Consensus        66 ~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~  145 (433)
T KOG1401|consen   66 AVTILGHANPEVARALAEQAKKLGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHP  145 (433)
T ss_pred             eccccCCCCHHHHHHHHHHHhhheeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCC
Confidence            68899999999999999999999 66666666669999999998874 3478999999999999999999999987655 


Q ss_pred             -----eEEecC
Q psy6206          78 -----VITQDQ   83 (83)
Q Consensus        78 -----ii~~~~   83 (83)
                           ||+|+|
T Consensus       146 ~~~t~~Iaf~n  156 (433)
T KOG1401|consen  146 EKKTKFIAFEN  156 (433)
T ss_pred             ccceeEEEEec
Confidence                 999986

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.84  E-value=1.9e-20  Score=127.95  Aligned_cols=81  Identities=31%  Similarity=0.453  Sum_probs=70.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------   73 (83)
                      |+.++||+||+|++|+.+|++++ +....+.+++..+|+++|++..|  .++|+|++||+||||.|+|+||.++      
T Consensus        49 ~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~  126 (406)
T PRK12381         49 AVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--ADRVFFCNSGAEANEAALKLARKYAHDRYGS  126 (406)
T ss_pred             hhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCC--CCeEEEcCCcHHHHHHHHHHHHHHHhhcCCC
Confidence            46799999999999999999986 44445667888999999999875  4699999999999999999999995      


Q ss_pred             CCCceEEecC
Q psy6206          74 NNDDVITQDQ   83 (83)
Q Consensus        74 ~r~~ii~~~~   83 (83)
                      +|++||+|++
T Consensus       127 ~r~~ii~~~~  136 (406)
T PRK12381        127 HKSGIVAFKN  136 (406)
T ss_pred             CCCeEEEECC
Confidence            7889999875

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.84  E-value=2.2e-20  Score=127.33  Aligned_cols=81  Identities=32%  Similarity=0.484  Sum_probs=70.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------   73 (83)
                      |+.++||+||+|++++.+|++++ +....+.+++..+|+++|++..|  .++++|++||+||||.|||+||.|+      
T Consensus        45 ~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~~--~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~  122 (397)
T TIGR03246        45 AVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATF--ADKVFFCNSGAEANEAALKLARRYALDKHGA  122 (397)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999986 33445678888999999999885  3699999999999999999999995      


Q ss_pred             CCCceEEecC
Q psy6206          74 NNDDVITQDQ   83 (83)
Q Consensus        74 ~r~~ii~~~~   83 (83)
                      +|++||++++
T Consensus       123 ~r~~ii~~~~  132 (397)
T TIGR03246       123 DKSEIVAFKN  132 (397)
T ss_pred             CCCEEEEECC
Confidence            7889999874

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.84  E-value=1.4e-20  Score=137.39  Aligned_cols=83  Identities=19%  Similarity=0.176  Sum_probs=70.6

Q ss_pred             CccCCC-CCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHh-hc--
Q psy6206           1 MSLPVG-HCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARV-HT--   73 (83)
Q Consensus         1 ~~~~lG-h~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~-~~--   73 (83)
                      |+.++| |+||+|++|+.+|++++ +.. ..+.+++..+|+++|.+..|.+ +++|||++|||||||.||||||+ |+  
T Consensus       375 w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~  454 (817)
T PLN02974        375 WTQGPDPTLQPELARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVD  454 (817)
T ss_pred             HHhCCCcCCCHHHHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHh
Confidence            678999 68999999999999998 433 3568899999999999965533 78999999999999999999964 52  


Q ss_pred             ----------------CCCceEEecC
Q psy6206          74 ----------------NNDDVITQDQ   83 (83)
Q Consensus        74 ----------------~r~~ii~~~~   83 (83)
                                      +|.+||+|+|
T Consensus       455 ~G~~~~~~~~~~~~~~~r~kIIa~~g  480 (817)
T PLN02974        455 HGFLENSGNEKRGGDLIELKVLALDG  480 (817)
T ss_pred             cCCCcccccccccccCCCCEEEEECC
Confidence                            4788999986

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.83  E-value=3.5e-20  Score=126.12  Aligned_cols=81  Identities=27%  Similarity=0.375  Sum_probs=70.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-------   72 (83)
                      |++++||+||+|++++.+|++++. ....+.+++..+|+++|++..|  .++++|++||+||||+|||+||.|       
T Consensus        50 ~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~  127 (396)
T PRK04073         50 SAVNQGHRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTG--KDMVLPMNTGAEAVETAIKAARRWAYDVKGV  127 (396)
T ss_pred             HhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcCC--CCeEEEcCChHHHHHHHHHHHHHHhhhccCC
Confidence            468899999999999999999873 3334667888999999999875  369999999999999999999998       


Q ss_pred             -cCCCceEEecC
Q psy6206          73 -TNNDDVITQDQ   83 (83)
Q Consensus        73 -~~r~~ii~~~~   83 (83)
                       +||++||++++
T Consensus       128 ~~~r~~ii~~~~  139 (396)
T PRK04073        128 EPNKAEIIACEG  139 (396)
T ss_pred             CCCCCEEEEECC
Confidence             57889999864

>PLN02624 ornithine-delta-aminotransferase

Probab=99.83  E-value=5.5e-20  Score=128.10  Aligned_cols=81  Identities=27%  Similarity=0.448  Sum_probs=70.0

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------   73 (83)
                      |++++||+||+|++++.+|++++. ....+.+++..+|+++|++.+|  .++++|++||+||||.|||+||.|+      
T Consensus        85 ~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~--~~~~~f~~SGseA~e~AlklAr~~~~~~~g~  162 (474)
T PLN02624         85 SAVNQGHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFG--YDMVLPMNTGAEGVETAIKLARKWGYEKKGI  162 (474)
T ss_pred             hcccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcC--CCeEEEeCChHHHHHHHHHHHHHHHHhhcCC
Confidence            468899999999999999999984 3345778899999999999984  5799999999999999999999974      


Q ss_pred             --CCCceEEecC
Q psy6206          74 --NNDDVITQDQ   83 (83)
Q Consensus        74 --~r~~ii~~~~   83 (83)
                        +|++||+|+|
T Consensus       163 ~~~~~~ii~~~~  174 (474)
T PLN02624        163 PKNEAIIVSCCG  174 (474)
T ss_pred             CCCCcEEEEECC
Confidence              3567998865

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.83  E-value=6.6e-20  Score=125.95  Aligned_cols=83  Identities=30%  Similarity=0.398  Sum_probs=72.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|.+++.+|++++ +.. ..+.+++..+|+++|++..|.+. ++++|++||+||+|.|+|+||.+++|.+
T Consensus        51 ~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~  130 (425)
T PRK08088         51 AVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSG  130 (425)
T ss_pred             hhcCCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCe
Confidence            56889999999999999999987 322 23457888999999999888655 6999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|++
T Consensus       131 iv~~~~  136 (425)
T PRK08088        131 VIAFTG  136 (425)
T ss_pred             EEEECC
Confidence            999874

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.82  E-value=7.7e-20  Score=125.22  Aligned_cols=81  Identities=35%  Similarity=0.432  Sum_probs=72.0

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |+.++||+||+|++++.+|+++... ..++++...+|+++|++..|. .++|+|++|||||+|.|+|+||.++||++||+
T Consensus        58 ~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~~~~lae~l~~~~~~-~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~  135 (423)
T TIGR00713        58 GPLILGHAHPRVVEAVKEALERGTS-YGAPTEAEILLAKEIISRVPS-VEMVRFVNSGTEATMSAVRLARGYTGRDKIIK  135 (423)
T ss_pred             cccccCCCCHHHHHHHHHHHHhCCc-CCCCCHHHHHHHHHHHHhCCc-ccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence            5778999999999999999998642 345678889999999999886 47999999999999999999999999999999


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |++
T Consensus       136 ~~~  138 (423)
T TIGR00713       136 FEG  138 (423)
T ss_pred             EcC
Confidence            864

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>KOG1403|consensus

Probab=99.82  E-value=4.9e-20  Score=122.30  Aligned_cols=80  Identities=70%  Similarity=1.081  Sum_probs=75.2

Q ss_pred             cCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206           3 LPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD   82 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~   82 (83)
                      .-.||+||+|++|...|+..+.+.+.|.++...+++++|...+|+ ++-+||+|||||||+.|+|+||.|++++.+|+++
T Consensus        57 aHvghchp~VV~A~~kQmat~~tN~RFlhd~lv~cA~~l~stlPe-Lsvc~F~NSGSEANDLALRLAR~ftkhqDvItld  135 (452)
T KOG1403|consen   57 AHVGHCHPEVVRAGAKQMATISTNNRFLHDELVQCARTLTSTLPE-LSVCFFVNSGSEANDLALRLARNFTKHQDVITLD  135 (452)
T ss_pred             hhcccCCHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHhhcCCC-ceEEEEecCCchhhHHHHHHHHhhcccCceEEEe
Confidence            347999999999999999999888889999999999999999997 9999999999999999999999999999999987


Q ss_pred             C
Q psy6206          83 Q   83 (83)
Q Consensus        83 ~   83 (83)
                      +
T Consensus       136 H  136 (452)
T KOG1403|consen  136 H  136 (452)
T ss_pred             c
Confidence            5

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.81  E-value=1.6e-19  Score=124.29  Aligned_cols=81  Identities=31%  Similarity=0.330  Sum_probs=71.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |+.++||+||+|++++.+|+++.. ...++++...+|+++|++.+|. .++|+|++||+||+|.|+|+||.++||++||+
T Consensus        60 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~la~~L~~~~~~-~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~  137 (426)
T PRK00062         60 GPMILGHAHPEVVEAVIEAAEKGL-SFGAPTELEVELAELVIELVPS-IEMVRMVNSGTEATMSAIRLARGYTGRDKIIK  137 (426)
T ss_pred             hhhhcCCCCHHHHHHHHHHHHhCC-cCCCCCHHHHHHHHHHHHhCCC-CCEEEEecCHHHHHHHHHHHHHHHhCCCeEEE
Confidence            357899999999999999998853 2345678889999999999874 78999999999999999999999999999999


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |++
T Consensus       138 ~~~  140 (426)
T PRK00062        138 FEG  140 (426)
T ss_pred             EcC
Confidence            875

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.81  E-value=1.7e-19  Score=123.22  Aligned_cols=81  Identities=33%  Similarity=0.470  Sum_probs=69.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----C
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT-----N   74 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~-----~   74 (83)
                      |+.++||+||+|++++.+|++++ +....+.+++..+|+++|.+..  +.++++|++||+||||.|+|+||.|+     +
T Consensus        46 ~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~--~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~  123 (395)
T PRK03715         46 AVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHS--CFDKVFFANSGAEANEGAIKLARKWGRKHKNG  123 (395)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhcc--CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCC
Confidence            47789999999999999999987 3334467889999999999875  36799999999999999999999884     6


Q ss_pred             CCceEEecC
Q psy6206          75 NDDVITQDQ   83 (83)
Q Consensus        75 r~~ii~~~~   83 (83)
                      |++||+|++
T Consensus       124 r~~ii~~~~  132 (395)
T PRK03715        124 AYEIITFDH  132 (395)
T ss_pred             CcEEEEECC
Confidence            788999875

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.78  E-value=1.5e-18  Score=117.69  Aligned_cols=81  Identities=28%  Similarity=0.316  Sum_probs=70.0

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------c
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------T   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------~   73 (83)
                      |++++||+||+|++|+.+|++++ +....+.++...+++++|++..|  .++|+|++||+||++.|+|++|.|      +
T Consensus        41 ~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~v~~~~sGseA~~~al~~ar~~~~~~G~~  118 (389)
T PRK01278         41 AVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENSF--ADKVFFTNSGAEAVECAIKTARRYHYGKGHP  118 (389)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhCC--CCEEEEcCCcHHHHHHHHHHHHHHHHhcCCC
Confidence            46799999999999999999986 33334567888999999999885  469999999999999999999998      6


Q ss_pred             CCCceEEecC
Q psy6206          74 NNDDVITQDQ   83 (83)
Q Consensus        74 ~r~~ii~~~~   83 (83)
                      +|++||++++
T Consensus       119 ~r~~vi~~~~  128 (389)
T PRK01278        119 ERYRIITFEG  128 (389)
T ss_pred             CCCEEEEECC
Confidence            7889998874

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.78  E-value=2e-18  Score=117.71  Aligned_cols=81  Identities=36%  Similarity=0.503  Sum_probs=69.2

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------   73 (83)
                      |+.+|||+||+|.+++.+++++. +....+.+++..+|+++|++..+  .++++|++||+||||.|+|+||.++      
T Consensus        50 ~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~sGseA~e~a~klar~~~~~~~~~  127 (403)
T PRK05093         50 AVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATF--AERVFFANSGAEANEAAFKLARRYACDRHGP  127 (403)
T ss_pred             HhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCC--CCEEEEeCchHHHHHHHHHHHHHHHhhcCCC
Confidence            46789999999999999999886 33334567788899999999874  4699999999999999999999995      


Q ss_pred             CCCceEEecC
Q psy6206          74 NNDDVITQDQ   83 (83)
Q Consensus        74 ~r~~ii~~~~   83 (83)
                      +|++||+|++
T Consensus       128 ~~~~ii~~~~  137 (403)
T PRK05093        128 EKTEIIAFHN  137 (403)
T ss_pred             CCCeEEEEcC
Confidence            6888998875

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.75  E-value=1e-17  Score=113.85  Aligned_cols=81  Identities=28%  Similarity=0.432  Sum_probs=69.2

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-------   72 (83)
                      |++++||+||+|.+++.+|++++. ....+.+++..+|+++|++..+.  ++++|++||+||+|.|||++|.+       
T Consensus        51 ~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~SGs~A~e~al~~a~~~~~~~~g~  128 (401)
T PRK00854         51 SAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGS--HKVLPMNSGAEAVETAIKAVRKWGYEVKGV  128 (401)
T ss_pred             hhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCC--CEEEEeCCcHHHHHHHHHHHHHHHHhccCC
Confidence            467899999999999999999873 33346678889999999998864  59999999999999999999987       


Q ss_pred             -cCCCceEEecC
Q psy6206          73 -TNNDDVITQDQ   83 (83)
Q Consensus        73 -~~r~~ii~~~~   83 (83)
                       +||.+||+|.+
T Consensus       129 ~~~~~~vi~~~~  140 (401)
T PRK00854        129 PEGQAEIIVCAD  140 (401)
T ss_pred             CCCCceEEEECC
Confidence             36778998864

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.73  E-value=2.9e-17  Score=110.86  Aligned_cols=81  Identities=40%  Similarity=0.532  Sum_probs=69.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      |+++|||+||+|++++.+|++++ +.+..+.++...+++++|.+..|  .++++|++||+||++.|+|++|.++||++||
T Consensus        39 ~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi  116 (377)
T PRK02936         39 AVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSA--GDLVFFCNSGAEANEAALKLARKHTGKSKIV  116 (377)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCC--CCEEEEeCCcHHHHHHHHHHHHHhcCCCeEE
Confidence            46689999999999999999986 33334557788999999998775  3589999999999999999999999999999


Q ss_pred             EecC
Q psy6206          80 TQDQ   83 (83)
Q Consensus        80 ~~~~   83 (83)
                      ++++
T Consensus       117 ~~~~  120 (377)
T PRK02936        117 TFEQ  120 (377)
T ss_pred             EECC
Confidence            9864

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.73  E-value=4.3e-17  Score=111.09  Aligned_cols=81  Identities=28%  Similarity=0.428  Sum_probs=68.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-------   72 (83)
                      +++++||+||+|++++.++++++.. ...+.++...+|+++|.+.++  .++++|++||+||||.|+|++|.+       
T Consensus        47 ~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~  124 (401)
T TIGR01885        47 SAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFG--YDKVLPMNTGAEAVETAIKLARKWGYKVKGI  124 (401)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhcC--CCEEEEeCccHHHHHHHHHHHHHHhhhhcCC
Confidence            3578999999999999999998743 233467888999999999985  579999999999999999999987       


Q ss_pred             -cCCCceEEecC
Q psy6206          73 -TNNDDVITQDQ   83 (83)
Q Consensus        73 -~~r~~ii~~~~   83 (83)
                       ++|++|+++++
T Consensus       125 ~~~~~~i~~~~~  136 (401)
T TIGR01885       125 PENQAIIVSAKG  136 (401)
T ss_pred             CCCCCEEEEECC
Confidence             35788998864

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.68  E-value=3.4e-16  Score=106.27  Aligned_cols=81  Identities=30%  Similarity=0.464  Sum_probs=64.2

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------   73 (83)
                      +++++||+||+|++++.+|++++.. ...+.++....+.+.|.+..  +.++++|++||+||+|.|||++|.+.      
T Consensus        41 ~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~  118 (400)
T PTZ00125         41 SAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLF--GYDKVLPMNSGAEAGETALKFARKWGYEVKGI  118 (400)
T ss_pred             hhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCC--CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCC
Confidence            4678999999999999999988743 33344666667777777655  36799999999999999999999762      


Q ss_pred             --CCCceEEecC
Q psy6206          74 --NNDDVITQDQ   83 (83)
Q Consensus        74 --~r~~ii~~~~   83 (83)
                        ++++||++++
T Consensus       119 ~~~~~~vl~~~~  130 (400)
T PTZ00125        119 PENQAKIIFCNG  130 (400)
T ss_pred             CCCCCeEEEECC
Confidence              4578988864

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.65  E-value=1.9e-15  Score=102.61  Aligned_cols=82  Identities=41%  Similarity=0.554  Sum_probs=70.5

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhhcc-CCC-CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           2 SLPVGHCHPAVVKAACTQLALLNT-NNR-FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~~~-~~~-~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      ++++||+||+|++++.+++++... ... ..++...+++++|++..|.+.++++|++||+||++.|++++|.++++.+||
T Consensus        47 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii  126 (413)
T cd00610          47 VLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKII  126 (413)
T ss_pred             hhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEE
Confidence            567999999999999999987632 221 247788999999999998667899999999999999999999999999999


Q ss_pred             EecC
Q psy6206          80 TQDQ   83 (83)
Q Consensus        80 ~~~~   83 (83)
                      .+++
T Consensus       127 ~~~~  130 (413)
T cd00610         127 SFEG  130 (413)
T ss_pred             EECC
Confidence            8863

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.64  E-value=2.2e-15  Score=102.37  Aligned_cols=81  Identities=40%  Similarity=0.607  Sum_probs=68.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDDV   78 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~i   78 (83)
                      |+.+|||+||+|.+++.+++++. +....+.++...+|+++|.+..+.. .++++|++||+||++.|+|+++. +||++|
T Consensus        53 ~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~-~g~~~i  131 (398)
T PRK03244         53 AVNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKI  131 (398)
T ss_pred             hhccCCCCCHHHHHHHHHHHHhccCccCccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH-HCCCeE
Confidence            36789999999999999999986 3334567778899999999998743 47999999999999999999998 678888


Q ss_pred             EEec
Q psy6206          79 ITQD   82 (83)
Q Consensus        79 i~~~   82 (83)
                      |+++
T Consensus       132 i~~~  135 (398)
T PRK03244        132 VAAE  135 (398)
T ss_pred             EEEC
Confidence            8875

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.63  E-value=3.3e-15  Score=101.04  Aligned_cols=79  Identities=33%  Similarity=0.418  Sum_probs=63.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      |++++|| ||+|.+++.+|++++. ..+.+.++...++++.|+..   ...+++|++||+||++.|+|++|.+++|.+||
T Consensus        39 ~~~~lG~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~---~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv  114 (375)
T PRK04260         39 GVTNLGF-HPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD---KDYLAFFCNSGAEANEAAIKIARKATGKQEII  114 (375)
T ss_pred             ccccCCC-CHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhcC---cCCEEEEcCccHHHHHHHHHHHHHhcCCCeEE
Confidence            4678999 9999999999998762 33345567778888877652   12478999999999999999999999999999


Q ss_pred             EecC
Q psy6206          80 TQDQ   83 (83)
Q Consensus        80 ~~~~   83 (83)
                      ++++
T Consensus       115 ~~~~  118 (375)
T PRK04260        115 TFQN  118 (375)
T ss_pred             EECC
Confidence            8753

>KOG1402|consensus

Probab=99.62  E-value=2e-15  Score=101.20  Aligned_cols=70  Identities=31%  Similarity=0.440  Sum_probs=63.1

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhhccC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206           2 SLPVGHCHPAVVKAACTQLALLNTN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      +++-|||||.|++++.+|.+++... ..+++....++++.+.+++  ++++|.-+|+|.||+|.|+|+||+|.
T Consensus        70 aVnqGhchpki~~aLqeq~~kLtlssrafYnd~~~~f~~~vt~lf--~~~kvlpmnTGaEa~Eta~KLaR~wg  140 (427)
T KOG1402|consen   70 AVNQGHCHPKIIKALQEQADKLTLSSRAFYNDVLGEFAEYVTKLF--GYDKVLPMNTGAEAVETACKLARKWG  140 (427)
T ss_pred             hcccCCCCHHHHHHHHHHHhHhhhhhHHHhhhhHHHHHHHHHHhc--CcceeeecccchhHHHHHHHHHHHHH
Confidence            6889999999999999999998643 4577888999999999999  46899999999999999999999884

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.59  E-value=1.2e-14  Score=98.38  Aligned_cols=80  Identities=38%  Similarity=0.522  Sum_probs=68.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN----   75 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r----   75 (83)
                      ++.++||+||++.+++.+++++.. ....++++...+|+++|.+..  +.++++|++||+||++.|+|++|.++++    
T Consensus        49 ~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~--~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~  126 (396)
T PRK02627         49 AVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELS--GMDKVFFCNSGAEANEAAIKLARKYGHKKGIE  126 (396)
T ss_pred             HhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhc--CCCEEEECCCcHHHHHHHHHHHHHHhcccCCC
Confidence            367899999999999999998863 334566788899999999986  4689999999999999999999999887    


Q ss_pred             -CceEEec
Q psy6206          76 -DDVITQD   82 (83)
Q Consensus        76 -~~ii~~~   82 (83)
                       .+|++++
T Consensus       127 ~~~ii~~~  134 (396)
T PRK02627        127 KPEIITAE  134 (396)
T ss_pred             CCeEEEEC
Confidence             7788775

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.39  E-value=4.7e-12  Score=85.30  Aligned_cols=80  Identities=35%  Similarity=0.457  Sum_probs=67.2

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN-----   74 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~-----   74 (83)
                      |+.++||+||.|.+++.+++++. .....++++...+|+++|.+..+  .+++++++||+||++.|++++|.+++     
T Consensus        37 ~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~  114 (379)
T TIGR00707        37 AVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSG--ADRVFFCNSGAEANEAALKLARKYTGDKGKE  114 (379)
T ss_pred             hhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCC--CCEEEEeCCcHHHHHHHHHHHHHHhhccCCC
Confidence            36789999999999999999876 33334567888999999999985  46999999999999999999998876     


Q ss_pred             CCceEEec
Q psy6206          75 NDDVITQD   82 (83)
Q Consensus        75 r~~ii~~~   82 (83)
                      +.+|++++
T Consensus       115 ~~~vi~~~  122 (379)
T TIGR00707       115 KKKIIAFE  122 (379)
T ss_pred             CCeEEEEC
Confidence            57788765

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK07505 hypothetical protein; Provisional

Probab=99.30  E-value=3.1e-11  Score=82.46  Aligned_cols=78  Identities=22%  Similarity=0.166  Sum_probs=61.7

Q ss_pred             ccCCC-CCCHHHHHHHHHHHHhhc--c--CC--CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh--h
Q psy6206           2 SLPVG-HCHPAVVKAACTQLALLN--T--NN--RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV--H   72 (83)
Q Consensus         2 ~~~lG-h~~p~i~~a~~~~~~~~~--~--~~--~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~--~   72 (83)
                      +..+| |+||+|++|+.+|+++..  .  .+  .+.++...+++++|.+.++.   ++++.+||++|++.++|+++.  +
T Consensus        54 ~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~~~~~sG~~a~~~ai~~~~~~~~  130 (402)
T PRK07505         54 CSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA---SVLTFTSCSAAHLGILPLLASGHL  130 (402)
T ss_pred             CCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC---CEEEECChHHHHHHHHHHHHhccc
Confidence            45788 999999999999998741  1  11  23467789999999999864   788888999999999999874  3


Q ss_pred             c-CCCceEEec
Q psy6206          73 T-NNDDVITQD   82 (83)
Q Consensus        73 ~-~r~~ii~~~   82 (83)
                      + +|.+||+++
T Consensus       131 ~~~~~~vi~~~  141 (402)
T PRK07505        131 TGGVPPHMVFD  141 (402)
T ss_pred             CCCCCCEEEEc
Confidence            4 577788775

>KOG1405|consensus

Probab=99.17  E-value=1.7e-11  Score=83.20  Aligned_cols=73  Identities=30%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             CccCCCCCCHHHHHHHHH-HHHhh----ccCCCCcc-hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206           1 MSLPVGHCHPAVVKAACT-QLALL----NTNNRFLH-DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~-~~~~~----~~~~~~~~-~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      .++++|||||.++++..+ +..+.    +..+.+|. +....+.+.|..+.|.+.++|+++-|||+|||+|+|.|+.|.
T Consensus        86 sSvplGYn~P~LvK~a~~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy  164 (484)
T KOG1405|consen   86 SSVPLGYNNPALVKAAQQPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWY  164 (484)
T ss_pred             cccccCCCCHHHHHHhcChHHHHHHhccccccCCChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHH
Confidence            368999999999998855 44432    33455665 445667777899999999999999999999999999999884

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=98.76  E-value=7.4e-08  Score=66.01  Aligned_cols=68  Identities=28%  Similarity=0.273  Sum_probs=53.4

Q ss_pred             CCC-CCHHHHHHHHHHHHhhccC---CC---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH-HHHhhcC
Q psy6206           5 VGH-CHPAVVKAACTQLALLNTN---NR---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR-LARVHTN   74 (83)
Q Consensus         5 lGh-~~p~i~~a~~~~~~~~~~~---~~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk-~ar~~~~   74 (83)
                      ||- +||+|++++.++++++...   +.   ..++...+|.++|.+.++.  ++++|.+||++|++.|++ +++.+++
T Consensus        56 lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--~~~~~~~SG~~An~~ai~~l~~~~~g  131 (406)
T PRK13393         56 LGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK--EAALLFTSGYVSNWAALSTLGSRLPG  131 (406)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC--CcEEEeCCcHHHHHHHHHHhhcCCCC
Confidence            566 6999999999999986321   11   2345678999999999964  689999999999999999 6765554

>PRK09064 5-aminolevulinate synthase; Validated

Probab=98.56  E-value=9.8e-07  Score=60.37  Aligned_cols=68  Identities=25%  Similarity=0.208  Sum_probs=53.3

Q ss_pred             CCCCC-CHHHHHHHHHHHHhhccC-----CC-CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206           4 PVGHC-HPAVVKAACTQLALLNTN-----NR-FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         4 ~lGh~-~p~i~~a~~~~~~~~~~~-----~~-~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      -+|++ ||+|++++.+++++....     .. .+++...+|.++|.+..+  .+..++.+||++|++.++++++.+.
T Consensus        56 ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g--~~~~~~~~sG~~an~~ai~~l~~~~  130 (407)
T PRK09064         56 YLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG--KEAALVFTSGYVSNDATLSTLAKLI  130 (407)
T ss_pred             CcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC--CCcEEEECcHHHHHHHHHHHHhCCC
Confidence            38887 899999999999886221     11 246678899999999885  3567888999999999999876653

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=98.49  E-value=1.6e-06  Score=59.23  Aligned_cols=63  Identities=24%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             CCHHHHHHHHHHHHhhccC---C---CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206           8 CHPAVVKAACTQLALLNTN---N---RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~---~---~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      +||+|++++.+++++....   +   ...++...+|.++|.+..+.  +..++.+||++|++.++++++.+
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~--~~~l~~~sG~~an~~ai~~l~~~  128 (402)
T TIGR01821        60 QHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK--ESALVFTSGYVANDATLATLAKI  128 (402)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC--CeEEEECchHHHHHHHHHHhhCC
Confidence            4899999999999986321   1   12456778999999999963  57888999999999999988754

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=98.17  E-value=2.5e-05  Score=52.46  Aligned_cols=78  Identities=23%  Similarity=0.208  Sum_probs=54.5

Q ss_pred             CCCCCHHHHHHHHHHHHhh-ccCCCCcc--hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc--CCCceE
Q psy6206           5 VGHCHPAVVKAACTQLALL-NTNNRFLH--DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT--NNDDVI   79 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~-~~~~~~~~--~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~--~r~~ii   79 (83)
                      .-|.+|.+++++.++++.. ..+..++.  +...++.+.|.+....+...++|+++|+||++.+++.++...  ++.+||
T Consensus        29 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl  108 (371)
T PRK13520         29 CTEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIV  108 (371)
T ss_pred             ecCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEE
Confidence            3568999999999988753 22222322  333678888888876444468899999999999999887652  344676


Q ss_pred             Eec
Q psy6206          80 TQD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      ..+
T Consensus       109 ~~~  111 (371)
T PRK13520        109 VPE  111 (371)
T ss_pred             ecC
Confidence            643

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=98.16  E-value=9.3e-06  Score=56.02  Aligned_cols=72  Identities=21%  Similarity=0.248  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHhhc-cCCC------CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH-Hhhc---CCCc
Q psy6206           9 HPAVVKAACTQLALLN-TNNR------FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA-RVHT---NNDD   77 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~-~~~~------~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a-r~~~---~r~~   77 (83)
                      +|++.+++...+...+ .++.      ......++..+.+.+.++.....++|+++|||++..|||=+ ..+.   ++++
T Consensus        14 ~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~H   93 (386)
T COG1104          14 DPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKH   93 (386)
T ss_pred             CHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCe
Confidence            6999999999887752 1111      12334566777788888776789999999999999999943 2221   3456


Q ss_pred             eEE
Q psy6206          78 VIT   80 (83)
Q Consensus        78 ii~   80 (83)
                      ||+
T Consensus        94 IIt   96 (386)
T COG1104          94 IIT   96 (386)
T ss_pred             EEE
Confidence            664

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=98.08  E-value=1.9e-05  Score=53.65  Aligned_cols=78  Identities=18%  Similarity=0.060  Sum_probs=53.9

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhhcc-CC-------CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206           2 SLPVGHCHPAVVKAACTQLALLNT-NN-------RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~~~-~~-------~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      ....||++|++++++.+++ ..+. +.       ....+...++++.+.+..+.+.+.+.|+++|+++.+.+++.++...
T Consensus        27 ~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~  105 (398)
T cd00613          27 SGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAY  105 (398)
T ss_pred             ccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcc
Confidence            4568999999999887777 3311 11       1122455788888888886555578888888888899999887665


Q ss_pred             C-CCceEE
Q psy6206          74 N-NDDVIT   80 (83)
Q Consensus        74 ~-r~~ii~   80 (83)
                      + ...|+.
T Consensus       106 ~~gd~Vl~  113 (398)
T cd00613         106 HKRNKVLV  113 (398)
T ss_pred             cCCCEEEE
Confidence            2 234554

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK07179 hypothetical protein; Provisional

Probab=98.07  E-value=2.9e-05  Score=53.29  Aligned_cols=61  Identities=28%  Similarity=0.324  Sum_probs=47.1

Q ss_pred             CCHHHHHHHHHHHHhhc---c-CCCCcc--hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLN---T-NNRFLH--DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~---~-~~~~~~--~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      +||+|++++.+++++..   . ++.+..  +...+|.++|.+.++.  +.++|++||+||++.+++...
T Consensus        69 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~--~~~~~~~sG~~An~~~l~~l~  135 (407)
T PRK07179         69 GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGF--ESCLLCQSGWAANVGLLQTIA  135 (407)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHhC
Confidence            68999999999998752   1 222222  4668889999998853  577899999999999999654

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=97.86  E-value=0.00025  Score=47.15  Aligned_cols=66  Identities=24%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             ccCCCCC-CHHHHHHHHHHHHhhccC-C-----CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           2 SLPVGHC-HPAVVKAACTQLALLNTN-N-----RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         2 ~~~lGh~-~p~i~~a~~~~~~~~~~~-~-----~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +..|||. ||+|.+++.+.+++.... +     ....+...++.+.|.+..+.  +..++.++|++++..++...
T Consensus         9 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~iv~~sg~~a~~~~~~~~   81 (349)
T cd06454           9 NDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK--EAALVFSSGYAANDGVLSTL   81 (349)
T ss_pred             CCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC--CCEEEeccHHHHHHHHHHHh
Confidence            4568997 999999999999875221 1     12356678888889888864  35677899999999888644

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=97.71  E-value=0.00063  Score=45.80  Aligned_cols=63  Identities=19%  Similarity=0.116  Sum_probs=46.9

Q ss_pred             CCCC-CCHHHHHHHHHHHHhhcc-C-----CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           4 PVGH-CHPAVVKAACTQLALLNT-N-----NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         4 ~lGh-~~p~i~~a~~~~~~~~~~-~-----~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ++|| .+|++++++.++++.... .     ...+.+...++.+.+.+...  .+.++++++|++++..+++.
T Consensus        49 ~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~--~~~~i~~~~g~~~~~~~l~~  118 (385)
T PRK05958         49 YLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG--AERALLFSSGYAANLAVLTA  118 (385)
T ss_pred             cccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC--CCcEEEECcHHHHHHHHHHH
Confidence            5787 789999999999987421 1     11235667889998988875  35677788999999988764

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=97.66  E-value=0.00058  Score=46.95  Aligned_cols=65  Identities=28%  Similarity=0.340  Sum_probs=47.6

Q ss_pred             CCHHHHHHHHHHHHhhccC---C-C-C-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH-HHHhhcC
Q psy6206           8 CHPAVVKAACTQLALLNTN---N-R-F-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR-LARVHTN   74 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~---~-~-~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk-~ar~~~~   74 (83)
                      +||++++++.+++++....   + . + .++...+|.++|.+..+.  +..++.+||++|++.+++ +++...|
T Consensus        61 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~--~~~i~~~sG~~a~~~~i~~l~~~~~g  132 (410)
T PRK13392         61 QHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK--ESALLFTSGYVSNDAALSTLGKLLPG  132 (410)
T ss_pred             CCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC--CCEEEECcHHHHHHHHHHHHhcCCCC
Confidence            5899999999999886221   1 1 2 234567899999999864  467777889999999999 5443344

>KOG1549|consensus

Probab=97.65  E-value=0.00057  Score=47.84  Aligned_cols=78  Identities=23%  Similarity=0.335  Sum_probs=53.5

Q ss_pred             CCCCCHHHHHHHHHHHHhh---ccCCCCc---chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH-HHHhhc--CC
Q psy6206           5 VGHCHPAVVKAACTQLALL---NTNNRFL---HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR-LARVHT--NN   75 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~---~~~~~~~---~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk-~ar~~~--~r   75 (83)
                      .|=.+|.|.+|+.+.+...   +....+.   .+..+...+.+.++...+.+.+.|++++||++..++| ++|.+.  .+
T Consensus        52 t~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~  131 (428)
T KOG1549|consen   52 TGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGDKTK  131 (428)
T ss_pred             CCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhcccccccc
Confidence            4556899999999988764   2211111   2224455566667777666679999999999999999 677654  23


Q ss_pred             CceEEec
Q psy6206          76 DDVITQD   82 (83)
Q Consensus        76 ~~ii~~~   82 (83)
                      ++||+++
T Consensus       132 k~iitl~  138 (428)
T KOG1549|consen  132 KHIITLQ  138 (428)
T ss_pred             ceEEEec
Confidence            4788764

>PLN02822 serine palmitoyltransferase

Probab=97.55  E-value=0.00084  Score=47.54  Aligned_cols=70  Identities=14%  Similarity=0.105  Sum_probs=51.3

Q ss_pred             CCHHHHHHHHHHHHhh-c--cC---CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALL-N--TN---NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~-~--~~---~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .||+|++++.+++++. .  ..   ...+++...+|.++|++..+. .+.++|+++++ ++..+++   .+.+|..+|.+
T Consensus       124 ~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~-~~~i~~s~G~~-a~~sai~---a~~~~gd~Ii~  198 (481)
T PLN02822        124 GNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT-PDSILYSYGLS-TIFSVIP---AFCKKGDIIVA  198 (481)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC-CCEEEECCHHH-HHHHHHH---HhCCCCCEEEE
Confidence            6899999999999985 2  11   113457789999999999985 46788886655 6777766   45677666665


Q ss_pred             c
Q psy6206          82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      +
T Consensus       199 d  199 (481)
T PLN02822        199 D  199 (481)
T ss_pred             e
Confidence            4

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=97.50  E-value=0.0023  Score=43.34  Aligned_cols=64  Identities=19%  Similarity=0.113  Sum_probs=47.5

Q ss_pred             CCCC-CCHHHHHHHHHHHHhh-ccCC-----CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           4 PVGH-CHPAVVKAACTQLALL-NTNN-----RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         4 ~lGh-~~p~i~~a~~~~~~~~-~~~~-----~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+|| .+|.+++++.+++++. ...+     ....+...++++.+.+..+.  +..++.+||++++..+++..
T Consensus        43 ~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~--~~~i~~~sG~~a~~~a~~~~  113 (385)
T TIGR01825        43 YLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT--EAALVFQSGFNTNQGVLSAL  113 (385)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC--CcEEEECcHHHHHHHHHHHh
Confidence            4799 8999999999998764 2111     12245678899999888753  35677789999999988864

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=97.43  E-value=0.0037  Score=42.40  Aligned_cols=76  Identities=17%  Similarity=0.247  Sum_probs=51.5

Q ss_pred             CCCCCHHHHHHHHHHHHhhc-cCCCCc------chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh-hcCCC
Q psy6206           5 VGHCHPAVVKAACTQLALLN-TNNRFL------HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV-HTNND   76 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~-~~~~~~------~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~-~~~r~   76 (83)
                      .+--.+.+.+++.+.++... .+....      .+...++.+.+.+.++.+.+.+.|+++|+++++.+++.... ..++.
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~   87 (379)
T TIGR03402         8 TTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKR   87 (379)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCC
Confidence            34457889999988876431 111111      23356677888888876667899999999999999997653 34444


Q ss_pred             ceEE
Q psy6206          77 DVIT   80 (83)
Q Consensus        77 ~ii~   80 (83)
                      .||.
T Consensus        88 ~vv~   91 (379)
T TIGR03402        88 HIIT   91 (379)
T ss_pred             eEEE
Confidence            5654

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=97.41  E-value=0.0033  Score=41.86  Aligned_cols=65  Identities=20%  Similarity=0.116  Sum_probs=45.6

Q ss_pred             cCCCC-CCHHHHHHHHHHHHhhcc-C--CC--C-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           3 LPVGH-CHPAVVKAACTQLALLNT-N--NR--F-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         3 ~~lGh-~~p~i~~a~~~~~~~~~~-~--~~--~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .++|+ .+|++++++.++++.... .  ..  + .++...++.+.|.+....  +..++.++|++++..+++..
T Consensus        25 ~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~--~~~i~~~~G~~~~~~~l~~~   96 (360)
T TIGR00858        25 DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT--EAALLFSSGYLANVGVISAL   96 (360)
T ss_pred             CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC--CCEEEECchHHHHHHHHHHh
Confidence            35795 789999999999976421 1  11  1 235567788889887743  35666788899998877643

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PLN03032 serine decarboxylase; Provisional

Probab=97.30  E-value=0.0018  Score=44.70  Aligned_cols=71  Identities=11%  Similarity=-0.065  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHHHHh-hccCCCC------cchHHHHHHHHHHhhCCCCCCeE--EeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           9 HPAVVKAACTQLAL-LNTNNRF------LHDNLVLCARKLASLLPDPLSVC--FFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         9 ~p~i~~a~~~~~~~-~~~~~~~------~~~~~~~la~~l~~~~p~~~~~v--~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      ++.+.+++.+.+.+ +..++..      ..+...+..+.+.+++..+.+.+  +|+++|||||-.|++.+|.+..+..|+
T Consensus        36 ~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi  115 (374)
T PLN03032         36 DYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILY  115 (374)
T ss_pred             ChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEE
Confidence            34566777666643 2111111      23445677788888876544444  999999999999999999764333343

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=97.22  E-value=0.0075  Score=40.52  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhc-cCCC-Cc------chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh---c
Q psy6206           5 VGHCHPAVVKAACTQLALLN-TNNR-FL------HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH---T   73 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~-~~~~-~~------~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~---~   73 (83)
                      .|--++.+.+++.+.++... .+.. ..      .+...++.+.|.+.+..+.+.+.|+++++++++.+++.....   .
T Consensus         7 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~   86 (353)
T TIGR03235         7 TTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQK   86 (353)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccC
Confidence            44567899999998885531 1111 11      133567888888888665668999999999999999865432   3


Q ss_pred             CCCceEEe
Q psy6206          74 NNDDVITQ   81 (83)
Q Consensus        74 ~r~~ii~~   81 (83)
                      |+..||+.
T Consensus        87 g~~~vi~~   94 (353)
T TIGR03235        87 GKKHIITS   94 (353)
T ss_pred             CCCeeeEc
Confidence            44556653

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PLN02651 cysteine desulfurase

Probab=97.14  E-value=0.0048  Score=41.76  Aligned_cols=76  Identities=20%  Similarity=0.209  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHHHHHhhc-cCCC--C-----cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh--cCC
Q psy6206           6 GHCHPAVVKAACTQLALLN-TNNR--F-----LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH--TNN   75 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~-~~~~--~-----~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~--~~r   75 (83)
                      +--.+++.+++.+.+.... .+..  .     ..+...++.+.+.+++..+.+.+.|+++|||++..+++.+...  ...
T Consensus         9 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g   88 (364)
T PLN02651          9 TPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKK   88 (364)
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCC
Confidence            3456889999988775431 1111  1     1233567778888888665678999999999999999876432  223


Q ss_pred             CceEEe
Q psy6206          76 DDVITQ   81 (83)
Q Consensus        76 ~~ii~~   81 (83)
                      .+||+.
T Consensus        89 ~~vl~~   94 (364)
T PLN02651         89 KHVITT   94 (364)
T ss_pred             CEEEEc
Confidence            456653

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=97.08  E-value=0.0099  Score=40.45  Aligned_cols=72  Identities=19%  Similarity=0.116  Sum_probs=47.9

Q ss_pred             CCCC-CHHHHHHHHHHHHhh---------ccCCCC----cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           5 VGHC-HPAVVKAACTQLALL---------NTNNRF----LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         5 lGh~-~p~i~~a~~~~~~~~---------~~~~~~----~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      ||++ +|++.+++.+++++.         +..+.-    .++...++.++|.+.++.  +.+++.+||+.|+-.   +..
T Consensus        15 L~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~--~~~l~~~sG~~a~~~---~~~   89 (370)
T PRK05937         15 LGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA--PEAFIVPSGYMANLG---LCA   89 (370)
T ss_pred             cCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC--CeEEEECChHHHHHH---HHH
Confidence            5654 799999998888764         111111    346678899999999965  467888999988843   333


Q ss_pred             hhcCCCceEEe
Q psy6206          71 VHTNNDDVITQ   81 (83)
Q Consensus        71 ~~~~r~~ii~~   81 (83)
                      .+.++..+|..
T Consensus        90 ~~~~~~d~ii~  100 (370)
T PRK05937         90 HLSSVTDYVLW  100 (370)
T ss_pred             HhCCCCCEEEE
Confidence            34445556554

>TIGR02006 IscS cysteine desulfurase IscS

Probab=96.90  E-value=0.0093  Score=40.98  Aligned_cols=65  Identities=15%  Similarity=0.151  Sum_probs=45.1

Q ss_pred             CCCHHHHHHHHHHHHhhc-cCCC-C------cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206           7 HCHPAVVKAACTQLALLN-TNNR-F------LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~~-~~~~-~------~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~   71 (83)
                      --+|.+.+++.+.++... .+.. .      ..+...++.+.|.+.++.+.+.++|+++|+|+++.+++....
T Consensus        14 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~   86 (402)
T TIGR02006        14 PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAH   86 (402)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence            347889999988775431 1111 0      113345667778888876567899999999999999986653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK02948 cysteine desulfurase; Provisional

Probab=96.82  E-value=0.036  Score=37.60  Aligned_cols=67  Identities=13%  Similarity=0.186  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcc--CCCC-----cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           4 PVGHCHPAVVKAACTQLALLNT--NNRF-----LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~~--~~~~-----~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      ..|.-.+.+.+++.+.++....  .+..     ..+...++.+.+.+.+..+.+.|+|+++++|++..+++...
T Consensus         8 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~   81 (381)
T PRK02948          8 ATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLL   81 (381)
T ss_pred             CCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHH
Confidence            3455678899999888765311  1111     12345667777888876556789999999999999988654

>PRK06225 aspartate aminotransferase; Provisional

Probab=96.76  E-value=0.019  Score=39.04  Aligned_cols=61  Identities=11%  Similarity=-0.000  Sum_probs=43.9

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcc-hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLH-DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+|.+.+++.+.+..... ..++. ....++.+.+++.++.+.+.+.++++|++++..+++..
T Consensus        42 ~~~~~~~a~~~~~~~~~~-~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~  103 (380)
T PRK06225         42 PHEEVREAMIRCIEEGEY-CKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAF  103 (380)
T ss_pred             CCHHHHHHHHHHHhcCCC-CCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHh
Confidence            478899999888865321 22322 22456778888877655568999999999999999864

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=96.69  E-value=0.034  Score=37.64  Aligned_cols=64  Identities=23%  Similarity=0.118  Sum_probs=44.3

Q ss_pred             CCCC-CCHHHHHHHHHHHHhh-ccC--CC---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           4 PVGH-CHPAVVKAACTQLALL-NTN--NR---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         4 ~lGh-~~p~i~~a~~~~~~~~-~~~--~~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+|| .+|++.+++.++++.. +..  ..   ...+...++++.+.+..+.  +...+.++|+++++.+++..
T Consensus        52 ~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~--~~~i~~tsG~~a~~~~~~~l  122 (397)
T PRK06939         52 YLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT--EDAILYSSCFDANGGLFETL  122 (397)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC--CcEEEEcChHHHHHHHHHHh
Confidence            3688 6899999999998764 211  11   1234557788888887753  34566677899999988753

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=96.61  E-value=0.018  Score=39.04  Aligned_cols=78  Identities=21%  Similarity=0.205  Sum_probs=52.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhhc-cC--CC-C----cchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHh-hc
Q psy6206           4 PVGHCHPAVVKAACTQLALLN-TN--NR-F----LHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARV-HT   73 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~-~~--~~-~----~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~-~~   73 (83)
                      ..|...+.+.+++.+.+.... .+  .. .    ..+...++.+.+.++++.+. +.|.|+.+++++++.++.-.+. +.
T Consensus         7 ~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~   86 (371)
T PF00266_consen    7 GTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLK   86 (371)
T ss_dssp             SS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGT
T ss_pred             CccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccc
Confidence            345667889999999887652 11  11 1    12344677777888877655 6899999999999999986643 44


Q ss_pred             CCCceEEe
Q psy6206          74 NNDDVITQ   81 (83)
Q Consensus        74 ~r~~ii~~   81 (83)
                      ...+|+..
T Consensus        87 ~g~~vl~~   94 (371)
T PF00266_consen   87 PGDEVLVT   94 (371)
T ss_dssp             TTCEEEEE
T ss_pred             cccccccc
Confidence            44566654

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=96.59  E-value=0.02  Score=38.99  Aligned_cols=57  Identities=11%  Similarity=-0.193  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      +||+|.++..+.+++..    .+++...+|.+.|.+..+.+.+.++.++||++|+..++..
T Consensus        34 ~~~~~~~~~~~~~~~~~----g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~a   90 (346)
T TIGR03576        34 GGFKIDEEDLELLETYV----GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILA   90 (346)
T ss_pred             CChhHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHH
Confidence            58999999999887751    2446778899999998865557999999999999988863

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=96.52  E-value=0.018  Score=40.51  Aligned_cols=65  Identities=17%  Similarity=-0.001  Sum_probs=43.7

Q ss_pred             CCCHHHHHHHHHHHHhh-ccC--CCCcchHHHHHHHHHHhhCCCC-C-CeEEe--eCChHHHHHHHHHHHHh
Q psy6206           7 HCHPAVVKAACTQLALL-NTN--NRFLHDNLVLCARKLASLLPDP-L-SVCFF--VNSGSEANDLALRLARV   71 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~-~~~--~~~~~~~~~~la~~l~~~~p~~-~-~~v~f--~~sGseA~e~Alk~ar~   71 (83)
                      ..+|++.+++.+.+... ..+  .....+...+..+.+.+.++.+ . +.+.|  +++|||||..|++.+|.
T Consensus        52 ~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~  123 (431)
T TIGR01788        52 WMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKW  123 (431)
T ss_pred             CCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHH
Confidence            34788999988888643 111  1122355566777788887543 2 34555  79999999999998873

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=96.45  E-value=0.032  Score=36.98  Aligned_cols=61  Identities=23%  Similarity=0.187  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           4 PVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++| .+|.+.+++.+.+...  ....+.+...++.+.+.+...  .+.+.++++|+|++..++...
T Consensus         7 ~~~-~~~~v~~a~~~~~~~~--~~~~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l   67 (338)
T cd06502           7 VTG-PTPEMLEAMAAANVGD--DVYGEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAH   67 (338)
T ss_pred             CCC-CCHHHHHHHHhcccCC--cccCCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHh
Confidence            455 6788999987755321  111234556788888888875  457889999999999988754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=96.41  E-value=0.05  Score=37.31  Aligned_cols=63  Identities=14%  Similarity=0.039  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhccC-C---C---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           5 VGHCHPAVVKAACTQLALLNTN-N---R---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~~~-~---~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|.-.+.+++++.+.......+ +   .   ...+...++.+.+.+.++  .+.++|+++|++++..+++..
T Consensus        29 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g--~~~~~~~~g~t~a~~~al~~l   98 (387)
T PRK09331         29 GGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG--MDEARVTHGAREGKFAVMHSL   98 (387)
T ss_pred             CCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHh
Confidence            5677888999998877432111 1   1   123456788888999885  457889999999999999754

>PRK14012 cysteine desulfurase; Provisional

Probab=96.35  E-value=0.11  Score=35.77  Aligned_cols=65  Identities=15%  Similarity=0.240  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHH--hh-ccCCC------C-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           6 GHCHPAVVKAACTQLA--LL-NTNNR------F-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~--~~-~~~~~------~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      +--++.+.+++.+++.  .. .....      + ..+...++.+.+.+..+.+.+.+.|+++|+++++.+++...
T Consensus        13 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~   87 (404)
T PRK14012         13 TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAA   87 (404)
T ss_pred             CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHH
Confidence            3456888999988775  21 11110      0 11334567778888887656679999999999999998654

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=96.27  E-value=0.02  Score=33.76  Aligned_cols=44  Identities=36%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             HHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          35 VLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        35 ~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      .++.+.+.+.++.+.+.++|+++|++|++.+++..+..  +++|+.
T Consensus         3 ~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~--~~~v~~   46 (170)
T cd01494           3 EELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGP--GDEVIV   46 (170)
T ss_pred             HHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCC--CCEEEE
Confidence            46677788877555678999999999999999977532  334554

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=96.24  E-value=0.098  Score=35.56  Aligned_cols=63  Identities=24%  Similarity=0.215  Sum_probs=43.6

Q ss_pred             CCCCC-CHHHHHHHHHHHHhh-c--cCCCC---cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           4 PVGHC-HPAVVKAACTQLALL-N--TNNRF---LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         4 ~lGh~-~p~i~~a~~~~~~~~-~--~~~~~---~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .+|++ +|++++++.+++++. .  ..+.+   ..+...++.+.+.+.+..  +.+..++||++|+..++..
T Consensus        48 ~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~--~~~ii~~~~~~a~~~~~~~  117 (393)
T TIGR01822        48 YLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGT--EDTILYASCFDANGGLFET  117 (393)
T ss_pred             ccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCC--CcEEEECchHHHHHHHHHH
Confidence            36777 899999999999773 2  11221   134457788888888864  3555568999999977653

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK02769 histidine decarboxylase; Provisional

Probab=96.15  E-value=0.027  Score=39.00  Aligned_cols=49  Identities=22%  Similarity=0.182  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHHhhCCCCCC--eEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          32 DNLVLCARKLASLLPDPLS--VCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~~~--~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      +...+..+.+.+++..+.+  ..+|+++|||||-.|+..+|.+.....|++
T Consensus        65 ~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~  115 (380)
T PRK02769         65 DFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYY  115 (380)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEe
Confidence            4456677777887754323  358999999999999999997654444544

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=96.11  E-value=0.049  Score=37.21  Aligned_cols=60  Identities=15%  Similarity=0.070  Sum_probs=46.3

Q ss_pred             CCCCC--CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           4 PVGHC--HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         4 ~lGh~--~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++|-+  .|++.+++.+.++.++    ...+...++.+.+.+..+  .+.++++++|++|+..+++..
T Consensus        19 ~~g~s~~~~~v~~a~~~~~~~~~----~~~~~~~~~~~~~a~~~g--~~~~~~~~g~t~al~~al~al   80 (363)
T TIGR01437        19 ILGVSTVSDEVADAQKRGAQNYF----EIKELVNKTGEYIANLLG--VEDAVIVSSASAGIAQSVAAV   80 (363)
T ss_pred             cCCCCCCCHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHhhC--CCeEEEEcCHHHHHHHHHHHH
Confidence            56666  7899999999876532    123556778888888874  457899999999999999865

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=96.06  E-value=0.068  Score=36.00  Aligned_cols=58  Identities=19%  Similarity=0.081  Sum_probs=38.7

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .+|.+.+++.+.++.+..   ++.....++.+.+.+....+.+.+++++++++++..+++.
T Consensus        43 ~~~~v~~a~~~~~~~~~~---~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~  100 (359)
T PRK03158         43 PSPKVKEAIAAHLDELAL---YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRA  100 (359)
T ss_pred             CCHHHHHHHHHHHHHhhc---CCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHH
Confidence            378899999888766421   2222234555555555544456899999999999877664

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=96.03  E-value=0.034  Score=38.18  Aligned_cols=59  Identities=24%  Similarity=0.298  Sum_probs=42.8

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcc-hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLH-DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      .+|++.++|.+.-....  ..|.. +...++.+++.+++..  ..++|..|||.||..||...-
T Consensus        12 ~~~~m~eam~~a~~~~~--~~YG~D~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~   71 (342)
T COG2008          12 PTPEMREALAAANAVGD--DVYGEDPTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHC   71 (342)
T ss_pred             CCHHHHHHHHhccccCC--CCCCCCHHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHhc
Confidence            47889888877443221  23333 4457788888888854  789999999999999998543

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=95.99  E-value=0.086  Score=35.61  Aligned_cols=62  Identities=13%  Similarity=0.009  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHHHHHHhhccC-------CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           6 GHCHPAVVKAACTQLALLNTN-------NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~~~-------~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      |+-.|.+.+++.+.......+       ....++...++.+.+.+.++.  +.++++++|+++++.++...
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~   79 (361)
T cd06452          11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSL   79 (361)
T ss_pred             CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHh
Confidence            677888888888877443111       112235677888999998854  78999999999999988754

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=95.91  E-value=0.06  Score=36.00  Aligned_cols=58  Identities=17%  Similarity=0.143  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|++++++.+++....   .++.+...++.+.+++....+.+.+.+++++++++..+++..
T Consensus        34 ~~~~~~a~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l   91 (346)
T TIGR01141        34 PPKAKEALRAEADKLH---RYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF   91 (346)
T ss_pred             CHHHHHHHHHhHHHhh---cCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh
Confidence            6889999998875432   122222246667777766544568999999999998887653

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=95.72  E-value=0.092  Score=35.75  Aligned_cols=64  Identities=20%  Similarity=0.169  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206          11 AVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus        11 ~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      +..+++.+.++.....  ...+...+|.+++.+.+  +..++..++||+.|...|++..-.-.|- .||
T Consensus         6 e~~~~v~~~l~s~~~~--~~g~~~~~fE~~~a~~~--g~~~~~~~~sgt~Al~~al~~l~~~~gd-eVi   69 (363)
T PF01041_consen    6 EEIDAVLEVLRSGWLS--TYGPYVEEFEKEFAEYF--GVKYAVAVSSGTSALHLALRALGLGPGD-EVI   69 (363)
T ss_dssp             HHHHHHHHHHHHTCCS--SSSHHHHHHHHHHHHHH--TSSEEEEESSHHHHHHHHHHHTTGGTTS-EEE
T ss_pred             HHHHHHHHHHHhCCcc--CCCHHHHHHHHHHHHHh--CCCeEEEeCChhHHHHHHHHhcCCCcCc-eEe
Confidence            3445555555553221  11467788999999999  4679999999999999999974433343 444

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=95.71  E-value=0.064  Score=35.76  Aligned_cols=47  Identities=28%  Similarity=0.330  Sum_probs=34.9

Q ss_pred             chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          31 HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        31 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      .+...++.+.|.+.++  .+.+.+++||++|++.+++..+...| .+||.
T Consensus        17 ~~~~~~~~~~la~~~~--~~~~~~~~sgt~al~~~l~~l~~~~g-d~vl~   63 (352)
T cd00616          17 GPKVREFEKAFAEYLG--VKYAVAVSSGTAALHLALRALGIGPG-DEVIV   63 (352)
T ss_pred             CHHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHcCCCCC-CEEEe
Confidence            4567788889998885  35788899999999999987643333 34554

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=95.59  E-value=0.27  Score=33.19  Aligned_cols=66  Identities=18%  Similarity=0.158  Sum_probs=43.5

Q ss_pred             CCCCHHHHHHHHHHHHhhcc-CCC-Cc------chHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHh
Q psy6206           6 GHCHPAVVKAACTQLALLNT-NNR-FL------HDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~~-~~~-~~------~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~   71 (83)
                      |=-.|.+.+++.+.++.... +.. ..      .....++.+.+.+.+..+ .+.++++++|+++++.+++....
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~   83 (373)
T cd06453           9 SQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGR   83 (373)
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence            33457888888887755421 111 11      123355677788877644 56899999999999999976543

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=95.55  E-value=0.043  Score=36.75  Aligned_cols=58  Identities=26%  Similarity=0.328  Sum_probs=40.6

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCc-chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFL-HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      .+|++.+++.+ +...+.  .|- .+...+|.+++.++++  .+.+.|+.||+-||..+++..-
T Consensus         7 ~~~~m~~a~~~-a~~gd~--~Yg~D~~~~~l~~~i~~l~g--~e~a~f~~sGT~An~~al~~~~   65 (290)
T PF01212_consen    7 PTPAMLEAMAA-ANVGDD--AYGEDPTTARLEERIAELFG--KEAALFVPSGTMANQLALRAHL   65 (290)
T ss_dssp             S-HHEEHHHHH-TTSB-C--CTTSSHHHHHHHHHHHHHHT--SSEEEEESSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHc-cccCCc--ccCCChhHHHHHHHHHHHcC--CCEEEEeCCCChHHHHHHHHHH
Confidence            56888888833 222222  233 4566889999999995  4577899999999999999554

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=95.42  E-value=0.083  Score=35.90  Aligned_cols=60  Identities=13%  Similarity=0.046  Sum_probs=40.0

Q ss_pred             CHHHHHHHHHHHHhhc---cC----C---CCcchHHHHHHHHHHhhCCC-CCCeEEeeCC-hHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN---TN----N---RFLHDNLVLCARKLASLLPD-PLSVCFFVNS-GSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~---~~----~---~~~~~~~~~la~~l~~~~p~-~~~~v~f~~s-GseA~e~Alk~   68 (83)
                      +|.|.+++.+.+....   ..    +   ....+...+..+++.+++.. ..+.|.|+++ ||+|+|.++.-
T Consensus        11 p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~   82 (355)
T cd00611          11 PEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLN   82 (355)
T ss_pred             CHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHh
Confidence            5789999998875421   00    1   01124466778888888763 3457777755 99999998873

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PLN02721 threonine aldolase

Probab=95.31  E-value=0.13  Score=34.35  Aligned_cols=59  Identities=14%  Similarity=0.142  Sum_probs=40.6

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      ..|.+.+++.+.  .......++++...+|.+.|.+....  +.+.++++|++++..++....
T Consensus        18 ~~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~~Gs~a~~~~l~~~~   76 (353)
T PLN02721         18 PTDAMRAAMANA--EVDDDVLGYDPTALRLEEEMAKIFGK--EAALFVPSGTMGNLISVLVHC   76 (353)
T ss_pred             CCHHHHHHHHhc--cCCCcccCCCHHHHHHHHHHHHHhCC--ceeEEecCccHHHHHHHHHHc
Confidence            467788887653  12111234456678899999998853  467889999999988887643

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=95.29  E-value=0.48  Score=32.42  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcc-C--CCC-----cchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHH
Q psy6206           6 GHCHPAVVKAACTQLALLNT-N--NRF-----LHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~~-~--~~~-----~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      |--.+.+.+++.+.++.... .  +..     ..+...++.+.+.+.... +.+.|.|+++++|+++.+++..
T Consensus        29 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~  101 (401)
T PRK10874         29 ALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSY  101 (401)
T ss_pred             cCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHh
Confidence            44457888888887765311 1  111     123456677788888875 5678999999999999988754

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=95.25  E-value=0.31  Score=32.81  Aligned_cols=64  Identities=28%  Similarity=0.236  Sum_probs=42.8

Q ss_pred             CCHHHHHHHHHHHHhh-ccCCCCc--chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206           8 CHPAVVKAACTQLALL-NTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~-~~~~~~~--~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~   71 (83)
                      .+|.+.+++.+.++.. .....++  .+...++.+.|.+.+..+.+.+.++++|++++..++...+.
T Consensus        32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~   98 (373)
T TIGR03812        32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKN   98 (373)
T ss_pred             chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHH
Confidence            4566777777665432 1112122  23347788888888865556788899999999999886654

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=95.21  E-value=0.12  Score=33.94  Aligned_cols=40  Identities=23%  Similarity=0.023  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206          32 DNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus        32 ~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~ar~   71 (83)
                      +....+++.+....  +.+.+.++++++|++++..+++....
T Consensus        40 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~   81 (350)
T cd00609          40 ELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN   81 (350)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC
Confidence            33455555555443  22356899999999999999997643

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=95.21  E-value=0.37  Score=32.50  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHhhc-c--CCCCc-----chHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN-T--NNRFL-----HDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~-~--~~~~~-----~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~   68 (83)
                      .+.+.+++.+.++... .  .+.++     .+...++.+.+.+.+... .+.|+|+++|+++++.++..
T Consensus        13 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~   81 (376)
T TIGR01977        13 PDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKG   81 (376)
T ss_pred             CHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHh
Confidence            4678888888777642 1  11222     244567778888887543 34899999999999988764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=95.04  E-value=0.088  Score=36.78  Aligned_cols=66  Identities=20%  Similarity=0.241  Sum_probs=39.7

Q ss_pred             cCCCCCCH----------HHHHHHHHHHHhhccCCCCc-----chHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHH
Q psy6206           3 LPVGHCHP----------AVVKAACTQLALLNTNNRFL-----HDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLA   65 (83)
Q Consensus         3 ~~lGh~~p----------~i~~a~~~~~~~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~A   65 (83)
                      ++||+++|          ++.+++.+.++.... ..|+     .+....+++.+....+  -..+.|++++++++|++.+
T Consensus        55 i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~-~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~  133 (430)
T PLN00145         55 LPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKY-NSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEII  133 (430)
T ss_pred             eeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcC-CCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHH
Confidence            45676644          577888777764211 1121     2333445555543222  1346899999999999998


Q ss_pred             HHHH
Q psy6206          66 LRLA   69 (83)
Q Consensus        66 lk~a   69 (83)
                      ++..
T Consensus       134 ~~~l  137 (430)
T PLN00145        134 MSVL  137 (430)
T ss_pred             HHHh
Confidence            8853

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=95.04  E-value=0.19  Score=35.37  Aligned_cols=51  Identities=16%  Similarity=0.219  Sum_probs=36.9

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      ++.+.++...+|.++|.++.+.  ....|++||++|+..++... .-.|. +||+
T Consensus        58 y~R~~~p~~~~le~~lA~l~g~--~~av~~sSGt~Al~~al~~l-l~~Gd-~Vi~  108 (433)
T PRK08134         58 YSRISNPTVAVLEERVAALEGG--VGAIATASGQAALHLAIATL-MGAGS-HIVA  108 (433)
T ss_pred             eecCcChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHH-hCCCC-EEEE
Confidence            3445667788999999998854  35799999999999998744 22343 4554

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=95.03  E-value=0.63  Score=31.83  Aligned_cols=77  Identities=18%  Similarity=0.202  Sum_probs=48.0

Q ss_pred             CCCCCHHHHHHHHHHHHhhc-cC--CCC-----cchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHH--hhc
Q psy6206           5 VGHCHPAVVKAACTQLALLN-TN--NRF-----LHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLAR--VHT   73 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~-~~--~~~-----~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar--~~~   73 (83)
                      .|--.+.+.+++.+.++... ..  +.+     ..+...++.+.+.+.+... .+.|.|+++++|++..++....  .+.
T Consensus        25 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~  104 (398)
T TIGR03392        25 TALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQ  104 (398)
T ss_pred             ccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCC
Confidence            34456788899888775431 11  111     1233456777888877653 5689999999999999887442  123


Q ss_pred             CCCceEEe
Q psy6206          74 NNDDVITQ   81 (83)
Q Consensus        74 ~r~~ii~~   81 (83)
                      ...+||..
T Consensus       105 ~gd~Vl~~  112 (398)
T TIGR03392       105 PGDEIIVS  112 (398)
T ss_pred             CCCEEEEC
Confidence            23456553

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=95.00  E-value=0.56  Score=31.90  Aligned_cols=62  Identities=15%  Similarity=0.119  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHHHhhcc-C-C--CCcc---hHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNT-N-N--RFLH---DNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~-~-~--~~~~---~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      -++.+.+++.+.++.... + .  .++.   +...+..+.+.+..+. +.+.|.|+++++|++..+++..
T Consensus        11 ~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~   80 (382)
T TIGR03403        11 LDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGV   80 (382)
T ss_pred             CCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHH
Confidence            468899999888876421 1 1  1111   1222333333333432 3568999999999999999854

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK10534 L-threonine aldolase; Provisional

Probab=94.82  E-value=0.29  Score=32.60  Aligned_cols=69  Identities=16%  Similarity=0.101  Sum_probs=46.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           3 LPVGHCHPAVVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      .+-| -+|.+.+++.+.....   ..| +.+...+|.+.|.+..  +.+.+.++++|++++-.++.. ....|. +|+
T Consensus         8 ~~~~-p~~~~~~a~~~~~~~~---~~Y~~~~~~~~L~~~la~~~--g~~~~~v~~~g~~a~~~~l~~-~~~~gd-~vi   77 (333)
T PRK10534          8 TVTR-PSRAMLEAMMAAPVGD---DVYGDDPTVNALQDYAAELS--GKEAALFLPTGTQANLVALLS-HCERGE-EYI   77 (333)
T ss_pred             cCCC-CCHHHHHHHHhccCCC---cccCCCHHHHHHHHHHHHHh--CCCeEEEeCchHHHHHHHHHH-hcCCCC-eeE
Confidence            3445 6788988887644332   334 5566788999999987  456678899999998887764 333444 444

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=94.81  E-value=0.22  Score=34.77  Aligned_cols=51  Identities=16%  Similarity=0.215  Sum_probs=38.7

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      ++.++++...+|.++|.++.+  .+.+.+++||++|+..++..... .|. +||+
T Consensus        51 ysr~~~p~~~~le~~lA~l~g--~~~~v~~~sG~~Ai~~al~~l~~-~Gd-~Vl~  101 (418)
T TIGR01326        51 YSRLMNPTTDVLEQRIAALEG--GVAALAVASGQAAITYAILNLAQ-AGD-NIVS  101 (418)
T ss_pred             eECCCChhHHHHHHHHHHHhC--CCeEEEEccHHHHHHHHHHHHhC-CCC-EEEE
Confidence            456677888899999999885  35789999999999999985432 233 4554

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=94.69  E-value=0.17  Score=34.80  Aligned_cols=42  Identities=17%  Similarity=0.179  Sum_probs=33.9

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+.+.++...+|.++|.+..+.  +.+++++||++|+..+++..
T Consensus        48 y~r~~~p~~~~le~~la~l~g~--~~~~~~~sG~~Ai~~al~al   89 (380)
T TIGR01325        48 YSRYANPTVAAFEERIAALEGA--ERAVATATGMSAIQAALMTL   89 (380)
T ss_pred             eecCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH
Confidence            3556677788999999998743  57888999999999999743

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=94.57  E-value=0.89  Score=31.26  Aligned_cols=62  Identities=11%  Similarity=0.075  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHhhcc---CCCC-----cchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHH
Q psy6206           7 HCHPAVVKAACTQLALLNT---NNRF-----LHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~~~---~~~~-----~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~   68 (83)
                      --.+.+.+++.+.++....   .+..     ..+...++.+.|.+.+.. +.+.|.|+++++|++..+++.
T Consensus        34 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~  104 (406)
T PRK09295         34 QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANS  104 (406)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHH
Confidence            3457888998888765321   1111     123356677778887764 456899999999999988874

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=94.54  E-value=0.4  Score=33.83  Aligned_cols=36  Identities=36%  Similarity=0.344  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +...+|.+.|.+.++  .+++++++||++|+..|++..
T Consensus        63 ~~~~~fe~~lA~~~g--~~~~v~~~sGt~al~~aL~al   98 (438)
T PRK15407         63 RFNDAFEKKLAEFLG--VRYALLVNSGSSANLLAFSAL   98 (438)
T ss_pred             hhHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHH
Confidence            345678888888874  457999999999999999865

>PLN02187 rooty/superroot1

Probab=94.52  E-value=0.14  Score=36.21  Aligned_cols=66  Identities=18%  Similarity=0.206  Sum_probs=40.0

Q ss_pred             cCCCCCCH----------HHHHHHHHHHHhhccCCCC-cc----hHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHH
Q psy6206           3 LPVGHCHP----------AVVKAACTQLALLNTNNRF-LH----DNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLA   65 (83)
Q Consensus         3 ~~lGh~~p----------~i~~a~~~~~~~~~~~~~~-~~----~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~A   65 (83)
                      .+||+++|          ++.+++.+.++... ...| +.    +....+++.+....+  -+.+.|+++++++++++.+
T Consensus        69 i~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~  147 (462)
T PLN02187         69 LPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGK-GNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIV  147 (462)
T ss_pred             EECCCCCCCCCCCCCCCHHHHHHHHHHHhCCC-CCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHH
Confidence            56777755          36777777665421 1122 11    233445555543322  2456899999999999998


Q ss_pred             HHHH
Q psy6206          66 LRLA   69 (83)
Q Consensus        66 lk~a   69 (83)
                      +...
T Consensus       148 ~~~l  151 (462)
T PLN02187        148 FESL  151 (462)
T ss_pred             HHHh
Confidence            8844

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=94.48  E-value=0.23  Score=33.92  Aligned_cols=58  Identities=10%  Similarity=0.032  Sum_probs=40.7

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|++.+++.+.+...   ..++.....+|.+.|.+....+.+.|.++++++|++..++...
T Consensus        44 ~~~v~~a~~~~~~~~---~~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l  101 (366)
T PRK01533         44 SPRVLDELQKSWLDH---ALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAV  101 (366)
T ss_pred             CHHHHHHHHHHHHhc---CcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh
Confidence            477888888766543   2233333456777777766555679999999999999888753

>PRK09105 putative aminotransferase; Provisional

Probab=94.47  E-value=0.55  Score=32.11  Aligned_cols=58  Identities=21%  Similarity=0.057  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|.+.+++.+.+...   ..|+.+...+|.+.+.+....+.+.|.+++++++++..++...
T Consensus        58 ~~~~~~a~~~~~~~~---~~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l  115 (370)
T PRK09105         58 SPAARDAAARSAALS---GRYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF  115 (370)
T ss_pred             CHHHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH
Confidence            577888888766542   2343333567777777776555678999999999999888743

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=94.47  E-value=0.27  Score=35.03  Aligned_cols=42  Identities=31%  Similarity=0.221  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206          32 DNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      ....++...+.+++.. ....-.|+++|||||..|+.++|..+
T Consensus       101 ~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~  143 (460)
T COG0076         101 ELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERW  143 (460)
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHH
Confidence            4456677777777754 23356999999999999999998664

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=94.30  E-value=0.1  Score=36.13  Aligned_cols=59  Identities=14%  Similarity=0.145  Sum_probs=36.2

Q ss_pred             CHH-HHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHH
Q psy6206           9 HPA-VVKAACTQLALLNTNNRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         9 ~p~-i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk   67 (83)
                      +|. +.+++.+++-..++-+..+.+...+..+.|.+++.  .+.+-++++.|||.++|+++.
T Consensus        15 ~~~~~~~~~~~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~   76 (374)
T TIGR01365        15 RPGWSIEELKNAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALW   76 (374)
T ss_pred             CchhhHHHHhhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHH
Confidence            466 56666654443322222334555666677777664  333346778999999999997

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=94.28  E-value=0.2  Score=34.42  Aligned_cols=59  Identities=19%  Similarity=0.050  Sum_probs=37.6

Q ss_pred             CHH-HHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCC-CCCeEEeeC-ChHHHHHHHHHH
Q psy6206           9 HPA-VVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPD-PLSVCFFVN-SGSEANDLALRL   68 (83)
Q Consensus         9 ~p~-i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~-~~~~v~f~~-sGseA~e~Alk~   68 (83)
                      +|+ |.+++.+..... |. ...+.+...+..+.|.+++.. +.+.|.|+. |||+++|.++.-
T Consensus        24 ~~~~v~~a~~~~~~~~~hr-~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~   86 (378)
T PRK03080         24 RPGWQLEALADALLGRSHR-QKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWS   86 (378)
T ss_pred             ChHHHHHHHHhhhcccCcC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHh
Confidence            467 888877543321 22 112245556777777777753 234687775 999999999863

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=94.25  E-value=0.15  Score=34.82  Aligned_cols=59  Identities=15%  Similarity=-0.030  Sum_probs=38.4

Q ss_pred             CHHHHHHHHHHHHhhc---cCCCCcchHHHHHHHHHHhhCCC-CCCeEEee-CChHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN---TNNRFLHDNLVLCARKLASLLPD-PLSVCFFV-NSGSEANDLALR   67 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~---~~~~~~~~~~~~la~~l~~~~p~-~~~~v~f~-~sGseA~e~Alk   67 (83)
                      +|+|.+++.++...+.   +-+..+.+...+..+.+.+++.. +...|.|+ .|||.++|.++.
T Consensus        15 ~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~   78 (361)
T TIGR01366        15 RLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATF   78 (361)
T ss_pred             CHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHH
Confidence            6888888776532221   11222345566777788887754 23467775 789999999996

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=94.22  E-value=1  Score=30.77  Aligned_cols=64  Identities=14%  Similarity=0.080  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHhhc-cCC-C--Cc----chHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHH
Q psy6206           6 GHCHPAVVKAACTQLALLN-TNN-R--FL----HDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~-~~~-~--~~----~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~a   69 (83)
                      |--.+.+.+++.+.++... ... +  ..    .+...++.+.+.+.+..+ .+.++|+++++|++..++...
T Consensus        28 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~  100 (403)
T TIGR01979        28 SQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSW  100 (403)
T ss_pred             cCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHh
Confidence            3345778888887765431 111 1  11    123456777788877644 468999999999999888743

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PLN02955 8-amino-7-oxononanoate synthase

Probab=94.18  E-value=0.4  Score=34.47  Aligned_cols=59  Identities=22%  Similarity=0.205  Sum_probs=45.7

Q ss_pred             CCHHHHHHHHHHHHhhcc---CCC---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNT---NNR---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~---~~~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      +||+++++..+.+++..+   .+.   ..+....+|-++|.+..  +.+.+.+.+||..||-.++..
T Consensus       117 ~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~--g~e~all~sSGy~AN~~~i~a  181 (476)
T PLN02955        117 SHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK--KKEDCLVCPTGFAANMAAMVA  181 (476)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH--CCCcEEEECChHHHHHHHHHH
Confidence            589999999999988622   121   22455678999999988  456888999999999999874

>PRK07050 cystathionine beta-lyase; Provisional

Probab=94.15  E-value=0.35  Score=33.56  Aligned_cols=43  Identities=16%  Similarity=0.010  Sum_probs=35.5

Q ss_pred             cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          25 TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        25 ~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .++.++++...+|.+++.++.+  .+.+.+++||++|+..++...
T Consensus        58 ~Y~r~~~pt~~~Le~~lA~l~g--~~~~l~~~sgt~Ai~~~l~al  100 (394)
T PRK07050         58 RYGLHATPTSLALAQRLAEIEG--GRHALLQPSGLAAISLVYFGL  100 (394)
T ss_pred             ccCCCCCHHHHHHHHHHHHHhC--CCeEEEeccHHHHHHHHHHHH
Confidence            3566778888899999999875  458999999999999999744

>PLN02263 serine decarboxylase

Probab=94.08  E-value=0.54  Score=33.74  Aligned_cols=44  Identities=18%  Similarity=0.052  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHhhCCCCC--CeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206          32 DNLVLCARKLASLLPDPL--SVCFFVNSGSEANDLALRLARVHTNN   75 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~~--~~v~f~~sGseA~e~Alk~ar~~~~r   75 (83)
                      +...++.+.+.+++..+.  ..-+++++|||||=.|+..||.+..+
T Consensus       133 ~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~  178 (470)
T PLN02263        133 QFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPD  178 (470)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCC
Confidence            344667777777774322  24688999999999999999987543

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=94.07  E-value=0.66  Score=31.29  Aligned_cols=57  Identities=18%  Similarity=0.116  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .|.+.+++.+.+..+.   .++.+...+|.+.+++..+.+.+.|.+++++++++...+..
T Consensus        47 ~~~~~~a~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~  103 (367)
T PRK02731         47 SPKAIEAIRAAADELH---RYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARA  103 (367)
T ss_pred             CHHHHHHHHHHHHhhc---CCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHH
Confidence            6778888888776542   22222234677777776654456899999999988776653

>PRK06108 aspartate aminotransferase; Provisional

Probab=93.95  E-value=0.99  Score=30.52  Aligned_cols=61  Identities=23%  Similarity=0.064  Sum_probs=39.5

Q ss_pred             CHHHHHHHHHHHHhhc--cC-CCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--TN-NRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+.+....  +. .....+....+++.+.+..+  ...+.++++++|++++..+++..
T Consensus        39 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l  104 (382)
T PRK06108         39 PDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL  104 (382)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh
Confidence            4678888887765531  11 11123444666766655443  34568999999999999988854

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=93.89  E-value=0.41  Score=31.84  Aligned_cols=58  Identities=16%  Similarity=0.137  Sum_probs=38.1

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCC--CeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPL--SVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~--~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+...  +....+ .+...++.+.|.+.+..+.  ..+.++.+|+++++.++...
T Consensus        11 ~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~   70 (355)
T TIGR03301        11 SATVRDAMLVDWC--HWDSEF-NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSL   70 (355)
T ss_pred             CHHHHHHhhhhcc--CCCHHH-HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhc
Confidence            4666666655211  111122 3667788888888875433  36889999999999999754

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=93.86  E-value=0.62  Score=32.46  Aligned_cols=46  Identities=13%  Similarity=0.084  Sum_probs=30.7

Q ss_pred             HHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          35 VLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        35 ~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .++.+.+.++.+.+.+.+.++++|+++.+.++. ++.+..+.+|+..
T Consensus       115 ~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~-a~~~~~g~~Vlv~  160 (447)
T PRK00451        115 FEYQTMICELTGMDVANASMYDGATALAEAALM-AVRITKRKKVLVS  160 (447)
T ss_pred             HHHHHHHHHHhCCCcceEEecCcHHHHHHHHHH-HHHhcCCCEEEEe
Confidence            344466677776556689999999998887664 4444344466654

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=93.85  E-value=0.3  Score=33.08  Aligned_cols=62  Identities=21%  Similarity=0.171  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhC------CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLL------PDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~------p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ..|.+.+++.+.+... .....|+.+....|.+.+.+..      +-+.++|+.+++++|++..+++..
T Consensus        40 ~~~~~~~al~~~l~~~~~~~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~  108 (368)
T PRK03317         40 PSPALVADIAEAVAEAAAGLNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAF  108 (368)
T ss_pred             CCHHHHHHHHHHHhhhhhhhccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHh
Confidence            3577899998887542 1112333222233444444433      334568999999999999888754

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=93.82  E-value=0.62  Score=31.99  Aligned_cols=55  Identities=11%  Similarity=-0.053  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++-.+++.+.+....   ....+...+|.+.|.+....  +.+.+++||++|+..+++..
T Consensus        14 ~~e~~~~~~~l~~~~---~~~g~~~~~le~~la~~~g~--~~~v~~~sgt~al~lal~al   68 (379)
T PRK11658         14 DEELAAVKEVLRSGW---ITTGPKNQALEQAFCQLTGN--QHAIAVSSATAGMHITLMAL   68 (379)
T ss_pred             HHHHHHHHHHHHcCC---ccCCHhHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHc
Confidence            344566666554431   12345567888888888853  46888999999999999754

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=93.75  E-value=1.1  Score=31.03  Aligned_cols=59  Identities=12%  Similarity=0.175  Sum_probs=42.6

Q ss_pred             CCHHHHHHHHHHHHhhc---cCC-C-Cc-chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLN---TNN-R-FL-HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~---~~~-~-~~-~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      +||+++++..+.+++..   ..+ . +. .....+|.+++.++...  +..++.+||.-|+-.++..
T Consensus        13 ~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~--e~al~~~sG~~a~~~~i~~   77 (392)
T PLN03227         13 SSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT--ESAILYSDGASTTSSTVAA   77 (392)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHHHH
Confidence            58999999999998741   111 1 21 34567899999998854  4677788998888877764

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=93.71  E-value=0.27  Score=33.66  Aligned_cols=59  Identities=15%  Similarity=0.022  Sum_probs=38.0

Q ss_pred             CHHHHHHHHHHHHhh-------ccCCCC---cchHHHHHHHHHHhhCCC--CCCeEEeeCChHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALL-------NTNNRF---LHDNLVLCARKLASLLPD--PLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~-------~~~~~~---~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e~Alk   67 (83)
                      +|+|.+|+.+++...       +..+..   +.+...+..++|.+++..  +.+-+++..||+.++|+++.
T Consensus        15 p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~   85 (360)
T PRK05355         15 PEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPM   85 (360)
T ss_pred             CHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHH
Confidence            588999998887431       111111   124567777778887753  22334566899999999986

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=93.69  E-value=0.77  Score=31.27  Aligned_cols=74  Identities=18%  Similarity=0.131  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHHHHHhhcc-C-CCCc-----chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh-hcCCCceE
Q psy6206           8 CHPAVVKAACTQLALLNT-N-NRFL-----HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV-HTNNDDVI   79 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~-~-~~~~-----~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~-~~~r~~ii   79 (83)
                      -.+.+.+++.+.+..... . ..++     .+...++.+.+.+.+....+.|.|++++++++..++..... .....+||
T Consensus        29 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl  108 (397)
T TIGR01976        29 IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVI  108 (397)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEE
Confidence            467899999888765321 1 1121     13346788888888865445799999999998776654322 22223565


Q ss_pred             Ee
Q psy6206          80 TQ   81 (83)
Q Consensus        80 ~~   81 (83)
                      ..
T Consensus       109 ~~  110 (397)
T TIGR01976       109 VT  110 (397)
T ss_pred             Ec
Confidence            53

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=93.66  E-value=0.43  Score=32.21  Aligned_cols=58  Identities=19%  Similarity=0.158  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|++.+++.+.++...   .|+.....+|.+.+.+..+-..+.+..++++++++..+++..
T Consensus        45 ~~~~~~~~~~~~~~~~---~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~  102 (357)
T PRK14809         45 SPAAVEAIREAAERVH---SYPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAM  102 (357)
T ss_pred             CHHHHHHHHHHHhhhh---cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh
Confidence            4678888877765432   223222346667777666555678999999999999887753

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=93.60  E-value=0.58  Score=32.66  Aligned_cols=61  Identities=20%  Similarity=0.189  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHHH-Hhhcc---CCCCc--chHHHHHHH----HHHhhCCCCCCeE-EeeCChHHHHHHHHHHH
Q psy6206           7 HCHPAVVKAACTQL-ALLNT---NNRFL--HDNLVLCAR----KLASLLPDPLSVC-FFVNSGSEANDLALRLA   69 (83)
Q Consensus         7 h~~p~i~~a~~~~~-~~~~~---~~~~~--~~~~~~la~----~l~~~~p~~~~~v-~f~~sGseA~e~Alk~a   69 (83)
                      |-||++.+++...+ .+...   .+.+.  ++...+|.+    ++.+....  +.+ ++.+||+.|+..++..-
T Consensus        39 ~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~--~~alv~~~SG~~A~~~~l~al  110 (416)
T PRK13034         39 FTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGC--DYANVQPHSGSQANGAVYLAL  110 (416)
T ss_pred             CCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCC--CceEEecCCcHHHHHHHHHHh
Confidence            45899999998885 55421   12221  355566666    88888854  456 45799999999998753

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=93.56  E-value=0.9  Score=30.65  Aligned_cols=60  Identities=15%  Similarity=0.019  Sum_probs=40.6

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+.+.... ...++.+...+|.+.+++..+.+.+.|.++++.++++..+++..
T Consensus        37 p~~~~~a~~~~~~~~~-~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l   96 (351)
T PRK14807         37 PEEVIKNIQEIVKSSQ-VNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAF   96 (351)
T ss_pred             CHHHHHHHHHHhhcCc-ccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHh
Confidence            3678888877665321 12333333467778888777655678999999999998887753

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=93.54  E-value=1.6  Score=30.28  Aligned_cols=63  Identities=21%  Similarity=0.185  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcc-C-C-C-Cc----chHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHH
Q psy6206           6 GHCHPAVVKAACTQLALLNT-N-N-R-FL----HDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~~-~-~-~-~~----~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~   68 (83)
                      |--.+.+.+++.+.++.... . . . +.    .+...++.+.+.+.+... .+.|.|+++++|++..+++.
T Consensus        42 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~  113 (424)
T PLN02855         42 SQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYT  113 (424)
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHH
Confidence            33456788888887765421 1 1 1 11    122356777888887653 46899999999999998873

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=93.32  E-value=0.45  Score=31.62  Aligned_cols=40  Identities=35%  Similarity=0.264  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHHHHHHh
Q psy6206          32 DNLVLCARKLASLLPDP--LSVCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Alk~ar~   71 (83)
                      +...++++.+.+.++.+  ...+.|+++|++|+..++..++.
T Consensus        38 ~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~   79 (345)
T cd06450          38 EMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARD   79 (345)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHH
Confidence            44566777777776432  34799999999999999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=93.28  E-value=0.75  Score=31.70  Aligned_cols=56  Identities=11%  Similarity=-0.026  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++..+++.+.+......+  ..+...++.+.+.+..  +.+.+.+++||++|...+++..
T Consensus        11 ~~e~~a~~~~~~~~~~~~--~g~~~~~~e~~la~~~--g~~~~v~~~sgt~aL~~~l~al   66 (376)
T TIGR02379        11 GQELEYIAEAISEGKLSG--DGPFSRRCETWLENRT--GTKKALLTPSCTAALEMAALLL   66 (376)
T ss_pred             HHHHHHHHHHHHcCCccC--CcHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHc
Confidence            445666666665432111  1345677888888876  4568999999999999988754

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=93.18  E-value=1.1  Score=30.19  Aligned_cols=58  Identities=17%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEee-CChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFV-NSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~-~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+.+....   .++.+...++.+.+.+..+.+.+.++++ ++.++++..+++..
T Consensus        49 ~~~~~~~~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~  107 (361)
T PRK00950         49 SPKAVEAIEKELSKIH---RYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTF  107 (361)
T ss_pred             CHHHHHHHHHHHHhhc---CCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHh
Confidence            5788888877766542   2232223567777777765445688884 55567788777653

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=93.16  E-value=0.59  Score=31.66  Aligned_cols=57  Identities=14%  Similarity=0.124  Sum_probs=40.8

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .|.+.+++.+.+..+.   .++.+...+|.+.+++..+-+.+.+.+++++++++..+++.
T Consensus        34 p~~~~~a~~~~~~~~~---~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~   90 (354)
T PRK06358         34 PESLKQAITENLDKLV---EYPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKV   90 (354)
T ss_pred             CHHHHHHHHHHHHhhh---cCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH
Confidence            5778888888765442   23322245677777777655567999999999999998875

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=93.09  E-value=0.59  Score=31.93  Aligned_cols=42  Identities=21%  Similarity=0.147  Sum_probs=33.8

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +..+.++...+|.++|.++.+.  +.+++++||++|+..+++..
T Consensus        34 y~r~~~p~~~~le~~la~l~g~--~~a~~~~sG~~Ai~~~l~~l   75 (369)
T cd00614          34 YSRIGNPTVDALEKKLAALEGG--EAALAFSSGMAAISTVLLAL   75 (369)
T ss_pred             eECCCChhHHHHHHHHHHHHCC--CCEEEEcCHHHHHHHHHHHH
Confidence            3455677788999999998853  57788899999999999854

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK07682 hypothetical protein; Validated

Probab=92.95  E-value=1  Score=30.63  Aligned_cols=59  Identities=20%  Similarity=0.059  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHhh-c-cC-CCCcchHHHHHHHHHHhhCC--CCC-CeEEeeCChHHHHHHHHHHH
Q psy6206          11 AVVKAACTQLALL-N-TN-NRFLHDNLVLCARKLASLLP--DPL-SVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        11 ~i~~a~~~~~~~~-~-~~-~~~~~~~~~~la~~l~~~~p--~~~-~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+.+++.+.++.. . +. .....+....+++.+.+..+  ... +.|+++++|++|++.+++..
T Consensus        37 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l  101 (378)
T PRK07682         37 NVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAI  101 (378)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh
Confidence            4677877766542 1 11 12223445667777765422  122 37999999999999988754

>KOG0259|consensus

Probab=92.94  E-value=0.46  Score=33.50  Aligned_cols=65  Identities=22%  Similarity=0.189  Sum_probs=43.3

Q ss_pred             cCCCCCC----------HHHHHHHHHHHHhhcc----CCCCcchHHHHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHH
Q psy6206           3 LPVGHCH----------PAVVKAACTQLALLNT----NNRFLHDNLVLCARKLASLLPDP--LSVCFFVNSGSEANDLAL   66 (83)
Q Consensus         3 ~~lGh~~----------p~i~~a~~~~~~~~~~----~~~~~~~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Al   66 (83)
                      +++||++          ++..+|+.+.+.....    ++...-......|+.+.+.+|..  .+.|+.++.=+.|+|.++
T Consensus        64 ipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i  143 (447)
T KOG0259|consen   64 LPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAI  143 (447)
T ss_pred             ccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHH
Confidence            5678865          4567888888876421    11111233355677766666644  468999999999999999


Q ss_pred             H
Q psy6206          67 R   67 (83)
Q Consensus        67 k   67 (83)
                      .
T Consensus       144 ~  144 (447)
T KOG0259|consen  144 S  144 (447)
T ss_pred             H
Confidence            8

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=92.89  E-value=0.68  Score=32.45  Aligned_cols=58  Identities=26%  Similarity=0.241  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHHHHHhh--c-cCCC---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALL--N-TNNR---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~--~-~~~~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      +||++++++.+.+++.  . ..+.   ..++.-.+|-++|.+..  +.+.....+||-.||...+-
T Consensus        54 ~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~--g~e~al~f~SGy~AN~~~i~  117 (388)
T COG0156          54 SHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL--GAEAALLFSSGFVANLGLLS  117 (388)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh--CCCcEEEEcccchhHHHHHH
Confidence            5899999999999984  1 1122   23567789999999998  45678888999999998886

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=92.76  E-value=0.82  Score=32.34  Aligned_cols=39  Identities=18%  Similarity=0.342  Sum_probs=30.8

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      +.+.++....|.+.|.++.+.  +...+++||+.|+..++.
T Consensus        64 sr~~~p~~~~Le~~lA~l~g~--~~av~~sSG~aAi~~al~  102 (436)
T PRK07812         64 TRIMNPTQDVVEQRIAALEGG--VAALLLASGQAAETFAIL  102 (436)
T ss_pred             cCCCCchHHHHHHHHHHHhCC--CeEEEEccHHHHHHHHHH
Confidence            334467778899999988743  467888999999999985

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=92.66  E-value=1.6  Score=31.09  Aligned_cols=62  Identities=16%  Similarity=0.083  Sum_probs=41.5

Q ss_pred             CCCCC--CHHHHHHHHHHHHhhcc----C-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206           4 PVGHC--HPAVVKAACTQLALLNT----N-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         4 ~lGh~--~p~i~~a~~~~~~~~~~----~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      |+|-+  ++++.+++.+.++....    . .+...+....+.+.|++++..  +...+.+||+.|+..++.
T Consensus        87 Nlg~s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~ga--e~alvv~sg~aAi~l~l~  155 (454)
T TIGR00474        87 NLGRAPLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGA--EDALVVNNNAAAVLLALN  155 (454)
T ss_pred             cCCCCCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH
Confidence            34444  58899999888875421    0 111234557788888888854  345667899999988884

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=92.62  E-value=0.9  Score=32.03  Aligned_cols=52  Identities=13%  Similarity=0.206  Sum_probs=36.8

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +....++....|.+.|.++.+  .+...+++||+.|+..++... .-.|. +||+.
T Consensus        58 y~r~~~p~~~~Le~~lA~leg--~~~al~~~sG~~Ai~~al~~l-l~~GD-~Vlv~  109 (431)
T PRK08248         58 YTRIMNPTTDVFEKRIAALEG--GIGALAVSSGQAAITYSILNI-ASAGD-EIVSS  109 (431)
T ss_pred             eECCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHH-hCCCC-EEEEc
Confidence            345566777889999998874  457889999999999998643 22333 45543

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=92.55  E-value=1.1  Score=30.49  Aligned_cols=59  Identities=12%  Similarity=-0.028  Sum_probs=34.2

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCC--------CCCCeEEeeCChHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLP--------DPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p--------~~~~~v~f~~sGseA~e~Alk   67 (83)
                      .|.+.+++.+.+........|+..-..+|.+.|++...        -+.+.|+.+++++|++..++.
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~  109 (374)
T PRK02610         43 PPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLI  109 (374)
T ss_pred             CHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHH
Confidence            46788888876654211122332222344444444332        234689999999999987665

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=92.49  E-value=0.72  Score=32.09  Aligned_cols=42  Identities=21%  Similarity=0.105  Sum_probs=35.1

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++.+.++....|.++|.++..  .+.+.+++||++|+..++...
T Consensus        47 Y~R~~npt~~~Le~~lA~leg--~e~ivvt~gg~~Ai~~~l~al   88 (388)
T PRK08861         47 YTRSGNPNRGLLEQTLSELES--GKGAVVTNCGTSALNLWVSAL   88 (388)
T ss_pred             ccCCCCchHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHH
Confidence            456677888899999999884  479999999999999998643

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=92.47  E-value=1.1  Score=30.05  Aligned_cols=58  Identities=14%  Similarity=0.051  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      |.+.+++.+.+.... ...++..-..+|.+.+.+...-+.+.+.++++++|++...++.
T Consensus        34 ~~~~~~~~~~~~~~~-~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~   91 (337)
T PRK03967         34 EELKEEIFEELKRVP-FNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKL   91 (337)
T ss_pred             HHHHHHHHHHhhcCc-cccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHH
Confidence            778888877765321 1233333344566666666544457899999999999876664

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=92.45  E-value=0.74  Score=31.85  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=32.6

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +.+.++...+|.++|.++.+.  +.+++++||++|+..++...
T Consensus        56 ~r~~~p~~~~le~~la~l~g~--~~~v~~ssG~~Ai~~al~al   96 (390)
T PRK08133         56 SRFTNPTVTMFQERLAALEGA--EACVATASGMAAILAVVMAL   96 (390)
T ss_pred             ECCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH
Confidence            455667788899999998854  46888999999999988743

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=92.41  E-value=0.73  Score=31.06  Aligned_cols=60  Identities=12%  Similarity=-0.032  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCC---CCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLP---DPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p---~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|.+++++.+.+..-. .+.|+.+...+|.+.+.+...   .+.++|..+++++|++..+++..
T Consensus        34 p~~~~~~~~~~~~~~~-~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~   96 (335)
T PRK14808         34 PEDLVDEVFRRLNSDT-LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF   96 (335)
T ss_pred             CHHHHHHHHHHhhhhh-hhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh
Confidence            4678888887664311 112332234455566655543   34568999999999999988743

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=92.37  E-value=1.5  Score=29.99  Aligned_cols=53  Identities=11%  Similarity=-0.021  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhhccCCCCc-chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          12 VVKAACTQLALLNTNNRFL-HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        12 i~~a~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      -.+++.+.++...   .+. .+....+.+.+.+..  +.+++.+++||++|.+.++...
T Consensus        13 ~~~~~~~~l~~~~---~~g~~~~~~~~e~~la~~~--g~~~~v~~~sgt~al~~~l~~~   66 (375)
T PRK11706         13 ELDYIQQAMSSGK---LCGDGGFTRRCQQWLEQRF--GSAKVLLTPSCTAALEMAALLL   66 (375)
T ss_pred             HHHHHHHHHHcCC---ccCCCHHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHHHh
Confidence            3455555554432   122 234567777788776  3468999999999999988754

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=92.33  E-value=0.58  Score=32.20  Aligned_cols=60  Identities=13%  Similarity=0.094  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCC------CCCCeEEeeCChHHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLP------DPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p------~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      +.+.+++.+.+..... ..+ +..-..++.+.+.+.+.      ...+.++++++|++|+..+++...
T Consensus        51 ~~~~~~~~~~l~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~  117 (403)
T TIGR01265        51 PEAEEAVKDALRSGKF-NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA  117 (403)
T ss_pred             HHHHHHHHHHHhcCCC-CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC
Confidence            5677777766643211 122 11112233333433332      134589999999999999998653

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=92.22  E-value=0.58  Score=31.35  Aligned_cols=59  Identities=17%  Similarity=0.044  Sum_probs=39.6

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|.+.+++.+.+...  ...++.+...+|.+.+++...-+.+.|++++++++++..+++..
T Consensus        39 ~~~~~~a~~~~~~~~--~~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l   97 (353)
T PRK05387         39 SPKVLEAIRAALGDD--LRLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAF   97 (353)
T ss_pred             CHHHHHHHHHHhhhh--hhcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh
Confidence            567888888766542  11233222346667776666444568999999999999988854

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=92.18  E-value=1.3  Score=30.23  Aligned_cols=58  Identities=12%  Similarity=0.013  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHhh---ccC----CCCcc---hHHHHHHHHHHhhCCC-CCCeEEee-CChHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALL---NTN----NRFLH---DNLVLCARKLASLLPD-PLSVCFFV-NSGSEANDLALR   67 (83)
Q Consensus        10 p~i~~a~~~~~~~~---~~~----~~~~~---~~~~~la~~l~~~~p~-~~~~v~f~-~sGseA~e~Alk   67 (83)
                      ..+++++.+.+...   +..    +....   +...++.++|.+++.. ....|+|+ .|||+|+|+++.
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~   74 (349)
T TIGR01364         5 EEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPL   74 (349)
T ss_pred             HHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHH
Confidence            46888888888743   111    11111   3446667777777752 23456555 669999999987

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=92.16  E-value=1.2  Score=31.50  Aligned_cols=38  Identities=26%  Similarity=0.116  Sum_probs=30.8

Q ss_pred             CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          29 FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        29 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ..++....|.+.|.++.+.  ..+..++||+.|+..++..
T Consensus        58 ~~nPtv~~lE~~la~leg~--~~av~~~SG~aAi~~al~a   95 (432)
T PRK06702         58 IGNPTLAAFEQKLAELEGG--VGAVATASGQAAIMLAVLN   95 (432)
T ss_pred             CCCcHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHH
Confidence            3467788899999998754  4678899999999999973

>TIGR01814 kynureninase kynureninase

Probab=92.13  E-value=0.9  Score=31.30  Aligned_cols=65  Identities=17%  Similarity=-0.014  Sum_probs=39.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcc--C-CCCc--c--hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           4 PVGHCHPAVVKAACTQLALLNT--N-NRFL--H--DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~~--~-~~~~--~--~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+|-.++.+.+++.+.++....  . ..+.  .  ....+..+.+ +.+..+.+.|.|++++|+++..+++-.
T Consensus        35 a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~~~~~v~~~~~~t~~l~~~~~~~  106 (406)
T TIGR01814        35 SLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLKL-RLVGAKEDEVVVMNTLTINLHLLLASF  106 (406)
T ss_pred             CcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhccc-cccCCCCCcEEEeCCchHHHHHHHHHh
Confidence            3555567788888877765411  1 1111  1  1122222334 566555678999999999999988743

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=92.08  E-value=0.84  Score=30.86  Aligned_cols=58  Identities=16%  Similarity=0.018  Sum_probs=40.2

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+.+....   .++.+...+|.+.+.+....+.+.|++++++++++..+++..
T Consensus        35 p~~~~~a~~~~~~~~~---~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l   92 (356)
T PRK08056         35 PVSLKRAIIDNLDCAE---RYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL   92 (356)
T ss_pred             CHHHHHHHHHHHHhcc---cCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh
Confidence            4678888887765532   233333456767777766545568999999999999888753

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=91.89  E-value=0.54  Score=31.72  Aligned_cols=38  Identities=16%  Similarity=0.119  Sum_probs=28.3

Q ss_pred             hHHHHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHHHHH
Q psy6206          32 DNLVLCARKLASLLPDP--LSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +...++.+.|.+++..+  .+.+.|++||+++++.++...
T Consensus        35 ~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l   74 (363)
T TIGR02326        35 IVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA   74 (363)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc
Confidence            44566777777777543  347999999999999988643

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=91.71  E-value=1  Score=30.12  Aligned_cols=47  Identities=15%  Similarity=0.118  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          32 DNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      +...++.+.+.+..+.+ ...+++++||++|+..++... ...|+ .||+
T Consensus        32 ~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~-~~~g~-~vl~   79 (356)
T cd06451          32 ALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL-LEPGD-KVLV   79 (356)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh-CCCCC-EEEE
Confidence            33567778888887642 345889999999999988743 23444 4554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=91.71  E-value=0.78  Score=32.03  Aligned_cols=35  Identities=26%  Similarity=0.207  Sum_probs=30.1

Q ss_pred             hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      +...++-+.+++.+  +...+..++|||.|.+.|++.
T Consensus        34 ~~v~~FE~~~ae~~--G~k~ava~~sgT~AL~laL~a   68 (374)
T COG0399          34 PFVRRFEQAFAEYL--GVKYAVAVSSGTAALHLALLA   68 (374)
T ss_pred             hHHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHh
Confidence            55678888899998  567899999999999999983

>PRK07908 hypothetical protein; Provisional

Probab=91.62  E-value=0.86  Score=30.65  Aligned_cols=56  Identities=11%  Similarity=0.061  Sum_probs=38.1

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcc-hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLH-DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      .+.+.+++.+.+....   .|+. .-..++.+.+.+..+.+.+.+.++++++|++..+++
T Consensus        37 ~~~~~~~~~~~~~~~~---~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~   93 (349)
T PRK07908         37 PEWLRERLAARLGDLA---AYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR   93 (349)
T ss_pred             CHHHHHHHHHHhhHhh---cCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh
Confidence            4668888888775541   2221 123456666666665456799999999999998876

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=91.44  E-value=1.1  Score=31.03  Aligned_cols=42  Identities=21%  Similarity=0.097  Sum_probs=34.1

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++.++++....|.+.|.++.+.  +.+.+++||++|+..++...
T Consensus        45 Y~R~~~p~~~~le~~lA~l~g~--~~v~~~~gg~~Ai~~~l~al   86 (382)
T TIGR02080        45 YSRSGNPTRDLLQQALAELEGG--AGAVVTNTGMSAIHLVTTAL   86 (382)
T ss_pred             ccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHH
Confidence            4566777888999999998753  57999999999999988743

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK04311 selenocysteine synthase; Provisional

Probab=91.39  E-value=2.6  Score=30.15  Aligned_cols=58  Identities=19%  Similarity=0.059  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHhhcc-C----CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNT-N----NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~-~----~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .+++.+++.+.+..... .    .+...+....+.+.|+++++.  +.+++++||+.|+..++..
T Consensus        99 ~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga--e~a~vv~sgtaAl~l~l~~  161 (464)
T PRK04311         99 SEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGA--EDALVVNNNAAAVLLALNA  161 (464)
T ss_pred             CHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHH
Confidence            57888888887765321 0    011234456788888888854  4678889999999988853

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=91.38  E-value=0.77  Score=31.26  Aligned_cols=58  Identities=16%  Similarity=0.008  Sum_probs=39.0

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|++.+++.+.+....   .|+.+...+|.+.|.+...-+.+.|.++++.++++..++...
T Consensus        47 ~~~~~~a~~~~~~~~~---~Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~  104 (369)
T PRK08153         47 SPSVIAAMREAAAEIW---KYGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLY  104 (369)
T ss_pred             CHHHHHHHHHHHHHhh---cCCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh
Confidence            5788999888765431   122222346666676666444568999999999999887743

>PLN02409 serine--glyoxylate aminotransaminase

Probab=91.14  E-value=0.7  Score=31.92  Aligned_cols=48  Identities=15%  Similarity=0.107  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          32 DNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +...++.+.+.+++..+ .+.++|+++|+++++.++...  +....+||..
T Consensus        42 ~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~--~~~Gd~Vlv~   90 (401)
T PLN02409         42 ALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT--LSPGDKVVSF   90 (401)
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc--CCCCCEEEEe
Confidence            44566777777776543 347899999999999988642  2223356554

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=91.05  E-value=0.55  Score=32.17  Aligned_cols=57  Identities=16%  Similarity=0.016  Sum_probs=37.1

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+. ...   ..++.+...+|.+.+.+....+.+.|++++++++++..+++..
T Consensus        67 ~~~v~~a~~~~-~~~---~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~  123 (380)
T PLN03026         67 PPEVLEALGNM-KFP---YVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCV  123 (380)
T ss_pred             CHHHHHHHHhh-Hhh---ccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHh
Confidence            46677776542 111   2233333456777777776545568999999999999888743

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=90.92  E-value=1.3  Score=30.01  Aligned_cols=57  Identities=19%  Similarity=0.060  Sum_probs=37.7

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .|.+.+++.+.+..+.   .|+.+...+|.+.|.+...-+.+.|..+++++|++..+++.
T Consensus        37 ~~~~~~a~~~~~~~~~---~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~   93 (360)
T PRK07392         37 PESVIAAIQSALSALR---HYPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRE   93 (360)
T ss_pred             CHHHHHHHHHHHHHhh---cCCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHH
Confidence            4778888887665532   22222223555666665544556899999999999988775

>PRK06767 methionine gamma-lyase; Provisional

Probab=90.76  E-value=1.6  Score=30.11  Aligned_cols=40  Identities=20%  Similarity=0.174  Sum_probs=31.0

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      ++.++++...+|.+.|.++.+.  +...+.+||+.|+..++.
T Consensus        55 y~r~~~pt~~~Le~~lA~l~G~--~~al~~~sG~~Ai~~~l~   94 (386)
T PRK06767         55 YSRLGNPTVKLFEERMAVLEGG--EEALAFGSGMAAISATLI   94 (386)
T ss_pred             ccCCCCcchHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH
Confidence            4456677778899999998854  457778999999888775

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=90.53  E-value=1.1  Score=30.82  Aligned_cols=41  Identities=20%  Similarity=0.139  Sum_probs=33.9

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ++.+.++...+|.++|++...  .+.+..++||.+|+..++.+
T Consensus        48 Y~R~~~p~~~~le~~lA~leg--~~~~v~~~sG~aAi~~~l~~   88 (364)
T PRK07269         48 YTRTKNPTRAKLEETLAAIES--ADYALATSSGMSAIVLAFSV   88 (364)
T ss_pred             eeCCCCccHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHH
Confidence            455677788899999999883  56899999999999999853

>PLN02242 methionine gamma-lyase

Probab=90.53  E-value=1.7  Score=30.50  Aligned_cols=42  Identities=19%  Similarity=0.216  Sum_probs=33.8

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++.+.++...+|.++|.++..  .+.+.+++||++|+..++...
T Consensus        70 Y~r~~~Pt~~~LE~~lA~l~g--~~~~l~~~sG~~Ai~~al~al  111 (418)
T PLN02242         70 YSRHFNPTVLNLGRQMAALEG--TEAAYCTASGMSAISSVLLQL  111 (418)
T ss_pred             ccCCCChhHHHHHHHHHHHhC--CCeEEEEccHHHHHHHHHHHH
Confidence            345567788899999999884  457788999999999998744

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=90.51  E-value=2  Score=30.22  Aligned_cols=43  Identities=19%  Similarity=0.139  Sum_probs=33.9

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      ++.+.++....|.++|.++.+  .....+++||++|+..+++...
T Consensus        52 y~r~~~pt~~~Le~~lA~l~g--~~~~l~~ssG~~Ai~~al~al~   94 (425)
T PRK06084         52 YTRIMNPTNDVLEQRVAALEG--GVGALAVASGMAAITYAIQTIA   94 (425)
T ss_pred             ccCCCCchHHHHHHHHHHHhC--CCceeEehhHHHHHHHHHHHHh
Confidence            455667778899999999875  3467788999999999998543

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=90.46  E-value=1.3  Score=31.16  Aligned_cols=50  Identities=18%  Similarity=0.247  Sum_probs=36.2

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      +...++....|.++|.++.+.  +..++.+||+.|++.+++... -.|. +||+
T Consensus        58 ~r~~~p~~~~le~~lA~l~g~--~~al~~~SG~~Ai~~al~all-~pGd-~VIv  107 (427)
T PRK05994         58 TRITNPTNAVLEERVAALEGG--TAALAVASGHAAQFLVFHTLL-QPGD-EFIA  107 (427)
T ss_pred             ECCCCccHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHh-CCCC-EEEE
Confidence            445566678899999998854  458889999999999998542 2343 4554

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=90.37  E-value=2.7  Score=29.54  Aligned_cols=75  Identities=20%  Similarity=0.209  Sum_probs=48.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcc--C-CC-----CcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHH-HHHhhcCC
Q psy6206           6 GHCHPAVVKAACTQLALLNT--N-NR-----FLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALR-LARVHTNN   75 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~~--~-~~-----~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk-~ar~~~~r   75 (83)
                      +..+..+.+++.+.......  . +.     ..+....+..+.+.+.+..+ .+.|.|+.+-||++..... +.+.+...
T Consensus        32 ~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~g  111 (405)
T COG0520          32 SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPG  111 (405)
T ss_pred             ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCC
Confidence            34567889999988765421  1 11     11334566777777777755 4789999999999998777 44433322


Q ss_pred             CceEE
Q psy6206          76 DDVIT   80 (83)
Q Consensus        76 ~~ii~   80 (83)
                      .+||.
T Consensus       112 deIv~  116 (405)
T COG0520         112 DEIVV  116 (405)
T ss_pred             CEEEE
Confidence            55654

>PLN02452 phosphoserine transaminase

Probab=90.29  E-value=1.4  Score=30.47  Aligned_cols=59  Identities=19%  Similarity=0.153  Sum_probs=35.0

Q ss_pred             CHHHHHHHHHHHHhhc--------c--CCCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--------T--NNRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--------~--~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      +|+|.+++.+.+....        .  -+..+.+...+..+.|.+++  |.+++-+++..|||.+.|+++.
T Consensus        19 p~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~   89 (365)
T PLN02452         19 PANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPL   89 (365)
T ss_pred             CHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHH
Confidence            5788888877653310        0  01111233455566666665  4444455666899999999876

>PLN02880 tyrosine decarboxylase

Probab=90.20  E-value=1.5  Score=31.43  Aligned_cols=42  Identities=26%  Similarity=0.135  Sum_probs=30.2

Q ss_pred             chHHHHHHHHHHhhCCCCC-------CeEEeeCChHHHHHHHHHHHHhh
Q psy6206          31 HDNLVLCARKLASLLPDPL-------SVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        31 ~~~~~~la~~l~~~~p~~~-------~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      ++...++.+.|.+++.-+.       .--+|+++|||||-.||..||.+
T Consensus       121 ~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~  169 (490)
T PLN02880        121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDR  169 (490)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHH
Confidence            3445667777777763211       23678999999999999999975

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=90.13  E-value=1.7  Score=29.97  Aligned_cols=61  Identities=20%  Similarity=0.174  Sum_probs=34.1

Q ss_pred             CCHHHHHHHHHHHHhh-c--cC-CCCc--chH---HHH-HHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALL-N--TN-NRFL--HDN---LVL-CARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~-~--~~-~~~~--~~~---~~~-la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      -+|++.+++.+.+... .  .. +.++  .+.   ..+ +.+.+.+.++.+...+++ +||++|++.++...
T Consensus        37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~-~sgt~al~~~l~~l  107 (416)
T PRK00011         37 VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQP-HSGSQANAAVYFAL  107 (416)
T ss_pred             CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeec-CCchHHHHHHHHHh
Confidence            4688888887765322 1  11 1111  111   222 233567777654444555 57999999888754

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=90.10  E-value=2.4  Score=28.80  Aligned_cols=58  Identities=17%  Similarity=0.112  Sum_probs=36.2

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+....+   ..|+...-.+|.+.+.+..+.+.+.|.++++++|++...+...
T Consensus        51 ~~~~~~al~~~~~~~---~~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~  108 (371)
T PRK05166         51 SPAVRRAFADIAELL---RLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAV  108 (371)
T ss_pred             CHHHHHHHHHHHHHh---hcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh
Confidence            356777776644332   1222211135667777666544568999999999998777643

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=89.98  E-value=3  Score=28.46  Aligned_cols=55  Identities=15%  Similarity=-0.011  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++-.+++.+.+.....   ...+...+|.+.+.+.+..  +..++++||++|+..+++..
T Consensus        10 ~~~~~~v~~~~~~~~~---~~g~~~~~le~~la~~~g~--~~~v~~~sgt~al~~~l~al   64 (380)
T TIGR03588        10 QDDIDAVVEVLKSDFL---TQGPTVPAFEEALAEYVGA--KYAVAFNSATSALHIACLAL   64 (380)
T ss_pred             HHHHHHHHHHHhcCCc---cCChhHHHHHHHHHHHHCC--CeEEEEcCHHHHHHHHHHHc
Confidence            3445666666654311   1234456788888888753  45666779999999999754

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=89.95  E-value=2.1  Score=30.13  Aligned_cols=33  Identities=18%  Similarity=0.041  Sum_probs=23.5

Q ss_pred             HHHHHHhhCCCCCCeEEee---CChHHHHHHHHHHH
Q psy6206          37 CARKLASLLPDPLSVCFFV---NSGSEANDLALRLA   69 (83)
Q Consensus        37 la~~l~~~~p~~~~~v~f~---~sGseA~e~Alk~a   69 (83)
                      ..+++.+.+..+.+.+.|+   +||++|+..+++-.
T Consensus        85 ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al  120 (452)
T PTZ00094         85 CQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTAL  120 (452)
T ss_pred             HHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHh
Confidence            3446667776555566677   79999999988744

>PRK07503 methionine gamma-lyase; Provisional

Probab=89.66  E-value=2.3  Score=29.59  Aligned_cols=41  Identities=24%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ++.+.++...+|.+.|.++.+.  +....++||+.|+..+++.
T Consensus        59 y~r~~~p~~~~le~~lA~l~g~--~~~i~~~sG~~Al~~~l~~   99 (403)
T PRK07503         59 YSRISNPTLALLEQRMASLEGG--EAAVALASGMGAITATLWT   99 (403)
T ss_pred             eeCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHH
Confidence            4556677788899999998754  3466778999999999874

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=89.50  E-value=2.3  Score=29.46  Aligned_cols=41  Identities=17%  Similarity=0.068  Sum_probs=33.0

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ++.++++...+|.++|.+..+.  +...+++||+.|+..++..
T Consensus        53 y~r~~~p~~~~le~~lA~l~g~--~~av~~~sG~~Ai~~~l~a   93 (391)
T TIGR01328        53 YSRLGNPTVSNLEGRIAFLEGT--EAAVATSSGMGAIAATLLT   93 (391)
T ss_pred             eeCCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHH
Confidence            4566777788999999999854  4578899999999988754

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PLN02656 tyrosine transaminase

Probab=89.30  E-value=1.8  Score=29.92  Aligned_cols=61  Identities=23%  Similarity=0.146  Sum_probs=36.5

Q ss_pred             CHHHHHHHHHHHHhh--c-c-CCCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALL--N-T-NNRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~--~-~-~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+.+..-  . + ......+....+++.+....+  -+.+.|++++++++++..++...
T Consensus        50 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l  116 (409)
T PLN02656         50 THVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSML  116 (409)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHH
Confidence            466788887766542  1 1 111112333455555544322  23468999999999999988754

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=89.27  E-value=1.5  Score=30.05  Aligned_cols=60  Identities=15%  Similarity=0.057  Sum_probs=34.3

Q ss_pred             CHHHHHHHHHHHHhhccCCCC-c----chHHHHHHHHHHhh-CCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRF-L----HDNLVLCARKLASL-LPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~-~----~~~~~~la~~l~~~-~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+.+..... ..| +    .+....+++.+... .+-..+.|.+++++++++..++...
T Consensus        50 ~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l  115 (401)
T TIGR01264        50 DPEVMQAMKDSLDSGKY-NGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAAL  115 (401)
T ss_pred             CHHHHHHHHHHHhccCC-CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHh
Confidence            45677777776654211 112 1    12234455544431 0123458999999999999988754

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK05764 aspartate aminotransferase; Provisional

Probab=89.19  E-value=4.6  Score=27.50  Aligned_cols=61  Identities=15%  Similarity=-0.109  Sum_probs=36.3

Q ss_pred             CHHHHHHHHHHHHhhc--cCC-CCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--TNN-RFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~~~-~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+.++...  +.. ....+....+++.+.+..+  -..+.+++++++++|+..++...
T Consensus        46 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~  111 (393)
T PRK05764         46 PEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMAL  111 (393)
T ss_pred             CHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHh
Confidence            5778888877765421  111 1112333455555543322  23357999999999999988754

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=89.19  E-value=2.7  Score=28.27  Aligned_cols=60  Identities=15%  Similarity=0.102  Sum_probs=37.1

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+.+..... ..|+.+...+|.+.|.+...-.. +.+.+++++++++..++.+.
T Consensus        41 ~~~~~~~~~~~~~~~~~-~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~  101 (356)
T PRK04870         41 PAELRAELGERLAEVAL-NRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALAC  101 (356)
T ss_pred             CHHHHHHHHHHhhcccc-ccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHh
Confidence            46789998887754211 12222223456666666654222 47888888889988877643

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=89.14  E-value=2  Score=29.83  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=33.4

Q ss_pred             CHHHHHHHHHHHHhhcc----------CCCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNT----------NNRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~----------~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      +++|.+++.+.+.....          -+..+.+...+..+.|.+++  |.+.+-+++..|||.+.|+++.
T Consensus        16 p~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~   86 (364)
T PRK12462         16 PDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPM   86 (364)
T ss_pred             CHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHH
Confidence            57888888776655311          01111233445555566665  4434334555669999998876

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=89.13  E-value=1.9  Score=29.83  Aligned_cols=41  Identities=34%  Similarity=0.250  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHhhCCCC-------CCeEEeeCChHHHHHHHHHHHHhh
Q psy6206          32 DNLVLCARKLASLLPDP-------LSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~-------~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      +...++.+.|.+++.-+       ..--.|+++|||||-.|+..||..
T Consensus        79 ~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~  126 (373)
T PF00282_consen   79 EIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARER  126 (373)
T ss_dssp             HHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHH
Confidence            33455666777776422       134689999999999999999865

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=88.72  E-value=2.7  Score=29.10  Aligned_cols=40  Identities=15%  Similarity=0.051  Sum_probs=31.8

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      +...++....|.++|.++.+  .+.+.+++||++|+..++..
T Consensus        45 ~r~gnPt~~~lE~~lA~l~g--~~~~~~~~sG~~Ai~~al~a   84 (377)
T TIGR01324        45 GRRGTLTHFALQDAMCELEG--GAGCYLYPSGLAAVTNSILA   84 (377)
T ss_pred             cCCCCccHHHHHHHHHHHhC--CCcEEEECcHHHHHHHHHHH
Confidence            34556777889999998875  35788999999999999863

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=88.33  E-value=1.5  Score=29.53  Aligned_cols=38  Identities=13%  Similarity=0.074  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHHHHH
Q psy6206          32 DNLVLCARKLASLLPDP--LSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +...++.+.+.+++...  .+.+.++.||+++++.++...
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l   76 (368)
T PRK13479         37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL   76 (368)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc
Confidence            45677777777777543  345889999999999998754

>PRK08363 alanine aminotransferase; Validated

Probab=88.18  E-value=6.5  Score=26.96  Aligned_cols=61  Identities=10%  Similarity=-0.075  Sum_probs=35.1

Q ss_pred             CHHHHHHHHHHHHhhc--cC-CCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--TN-NRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+.+....  .. .....+....+++.+....+  -+.+.|++++++++|+..++...
T Consensus        48 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~  113 (398)
T PRK08363         48 PEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGAL  113 (398)
T ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHh
Confidence            4567778877665421  11 11112333445544433212  23458999999999999988754

>PRK08960 hypothetical protein; Provisional

Probab=88.16  E-value=6.4  Score=26.87  Aligned_cols=61  Identities=23%  Similarity=-0.007  Sum_probs=36.9

Q ss_pred             CHHHHHHHHHHHHhh--cc-CCCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALL--NT-NNRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~--~~-~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+.+.+++.+.+...  .. ......+....+++.+.+..  +...+.|++++++++++..++...
T Consensus        47 ~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~  112 (387)
T PRK08960         47 AEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLL  112 (387)
T ss_pred             CHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHh
Confidence            456888887777642  11 11111233355566554432  224568999999999999988643

>PRK07568 aspartate aminotransferase; Provisional

Probab=87.99  E-value=6.6  Score=26.78  Aligned_cols=60  Identities=13%  Similarity=-0.014  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHhhc-cCC-CCcchHHHHHHHHHHhh-CCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLN-TNN-RFLHDNLVLCARKLASL-LPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~~-~~~-~~~~~~~~~la~~l~~~-~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +.+.+++.+...... ... ....+....+++.+... .+.+.+.|+++++|++++..+++..
T Consensus        46 ~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l  108 (397)
T PRK07568         46 EVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAI  108 (397)
T ss_pred             HHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHh
Confidence            456667665443321 111 11122334455444321 1234568999999999999988753

>PRK08361 aspartate aminotransferase; Provisional

Probab=87.90  E-value=4.8  Score=27.54  Aligned_cols=60  Identities=15%  Similarity=-0.006  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHhh--cc-CCCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALL--NT-NNRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~--~~-~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +.+.+++.+.+...  .. ......+....+++.+.+..  +-..+.++++++|++|+..+++..
T Consensus        49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l  113 (391)
T PRK08361         49 KNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESL  113 (391)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHh
Confidence            56677776665432  11 11111223345555554332  223468999999999999988754

>PRK09082 methionine aminotransferase; Validated

Probab=87.85  E-value=5.4  Score=27.25  Aligned_cols=61  Identities=21%  Similarity=-0.009  Sum_probs=37.7

Q ss_pred             CHHHHHHHHHHHHhh-c-cC-CCCcchHHHHHHHHHHhhCCC--CC-CeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALL-N-TN-NRFLHDNLVLCARKLASLLPD--PL-SVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~-~-~~-~~~~~~~~~~la~~l~~~~p~--~~-~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|.+.+++.+.++.. . +. .....+....+++.+.+....  +. +.+.++++|++|++.+++..
T Consensus        45 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~  111 (386)
T PRK09082         45 PPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILAL  111 (386)
T ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHH
Confidence            567888887766543 1 11 111223345677766655432  12 36999999999999998754

>PLN02590 probable tyrosine decarboxylase

Probab=87.84  E-value=2.7  Score=30.70  Aligned_cols=41  Identities=24%  Similarity=0.164  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHhhCCCCC-------CeEEeeCChHHHHHHHHHHHHhh
Q psy6206          32 DNLVLCARKLASLLPDPL-------SVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~~-------~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      +....+.+.|.+++.-+.       .--.|+++|||||-.||..||..
T Consensus       170 ~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~  217 (539)
T PLN02590        170 ELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDR  217 (539)
T ss_pred             HHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHH
Confidence            344556666777663211       23678999999999999999985

>PRK05968 hypothetical protein; Provisional

Probab=87.78  E-value=3.6  Score=28.46  Aligned_cols=51  Identities=16%  Similarity=0.010  Sum_probs=34.8

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      ++.+.++...+|.+++.++.+.  +...+.+||+.|+..++.. ..-.|. +||+
T Consensus        57 Y~r~~~p~~~~le~~lA~l~g~--~~av~~~sG~~Ai~~al~a-l~~~Gd-~Vl~  107 (389)
T PRK05968         57 YSRGDNPTVRAFEEMLAKLEGA--EDARGFASGMAAISSTVLS-FVEPGD-RIVA  107 (389)
T ss_pred             ccCCCChhHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHH-HhCCCC-EEEE
Confidence            3455566778899999998854  3456669999999998863 222343 4554

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=87.76  E-value=1.7  Score=32.23  Aligned_cols=42  Identities=24%  Similarity=0.093  Sum_probs=31.7

Q ss_pred             chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206          31 HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        31 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      +....++.+.|+++++-+...-.|+++||+||=.||-+||..
T Consensus       122 t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~  163 (608)
T TIGR03811       122 SQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNI  163 (608)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHh
Confidence            345567778888887432234568999999999999999964

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=87.62  E-value=4.8  Score=28.11  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ++.++++...+|.+.|.++..  .+.++..+||+.|+..++..
T Consensus        64 Y~r~~~p~~~~le~~lA~l~g--~~~al~~~sG~~Ai~~~l~a  104 (403)
T PRK07810         64 YSRYGNPTVSMFEERLRLIEG--AEACFATASGMSAVFTALGA  104 (403)
T ss_pred             eeCCCCchHHHHHHHHHHHhC--CCcEEEECChHHHHHHHHHH
Confidence            456677778899999999875  45788999999999998864

>PRK12414 putative aminotransferase; Provisional

Probab=87.58  E-value=7.1  Score=26.71  Aligned_cols=61  Identities=18%  Similarity=0.023  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHHHHhhc--c-CCCCcchHHHHHHHHHHhhCCCC---CCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--T-NNRFLHDNLVLCARKLASLLPDP---LSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~-~~~~~~~~~~~la~~l~~~~p~~---~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|.+.+++.+.+....  + ......+....+++.+.+..+..   .+.+..+++|+++++.++...
T Consensus        44 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l  110 (384)
T PRK12414         44 DPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISAL  110 (384)
T ss_pred             CHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHh
Confidence            5667888777655321  1 11112344566777776655432   247999999999999888743

>PRK06434 cystathionine gamma-lyase; Validated

Probab=87.46  E-value=3.5  Score=28.74  Aligned_cols=41  Identities=20%  Similarity=0.093  Sum_probs=33.0

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ++.+.++...+|.+++.++.+.  +.+..++||+.|+..++..
T Consensus        58 Y~r~~~P~~~~lE~~la~leg~--~~av~~sSG~aAi~~al~a   98 (384)
T PRK06434         58 YTRWGNPTVQAFEEKYAVLENA--EHALSFSSGMGAITSAILS   98 (384)
T ss_pred             eeCCCChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHH
Confidence            3455677788899999998843  5688899999999999974

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=86.83  E-value=6.3  Score=26.84  Aligned_cols=36  Identities=11%  Similarity=0.059  Sum_probs=27.5

Q ss_pred             hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +...++.+.+.+...  .+.+.++++|++++..++...
T Consensus        51 ~~~~~~~e~lA~~~g--~~~~~i~~g~~~a~~~~~~~l   86 (370)
T TIGR02539        51 PPIHDFLEDLAEFLG--MDEARVTHGAREGKFAVMHAL   86 (370)
T ss_pred             hHHHHHHHHHHHHhC--CCceEEECChHHHHHHHHHHh
Confidence            356677788888884  456777899999999888744

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=86.78  E-value=2  Score=29.10  Aligned_cols=42  Identities=12%  Similarity=0.064  Sum_probs=32.1

Q ss_pred             CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          28 RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        28 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|+.....+|.+.+.+..+-+.+.|+++++++|++..+++..
T Consensus        53 ~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~   94 (351)
T PRK01688         53 RYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAF   94 (351)
T ss_pred             cCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh
Confidence            355444567888888777656679999999999999988753

>PRK03321 putative aminotransferase; Provisional

Probab=86.54  E-value=3.3  Score=27.79  Aligned_cols=55  Identities=20%  Similarity=0.087  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      |.+.+++.+.+..+.   .++.+...++.+.+.+.+..+.+.+.++++.+++...++.
T Consensus        38 ~~~~~a~~~~~~~~~---~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~   92 (352)
T PRK03321         38 PSVRAAIARAAAGVN---RYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQ   92 (352)
T ss_pred             HHHHHHHHHHHHhcC---cCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHH
Confidence            578888877665432   2233334566666666664445689888777777776665

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=86.38  E-value=6.5  Score=27.89  Aligned_cols=41  Identities=20%  Similarity=0.160  Sum_probs=31.8

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ++...++....+.+.|.++...  ...+..+||++|+..++..
T Consensus        63 Y~r~~~pt~~~le~~la~l~g~--~~~v~fsSG~~Ai~~al~~  103 (437)
T PRK05613         63 YSRLTNPTVEALENRIASLEGG--VHAVAFASGQAAETAAILN  103 (437)
T ss_pred             eeCccChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHH
Confidence            3445567788899999888753  5788889999999988863

>PRK09028 cystathionine beta-lyase; Provisional

Probab=86.33  E-value=4.2  Score=28.46  Aligned_cols=50  Identities=16%  Similarity=0.050  Sum_probs=33.5

Q ss_pred             CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          28 RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        28 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ...++....|.++|.++-+.  ..+.+++||++|+..++... .-.| .+||+.
T Consensus        57 r~~npt~~~Le~~iA~le~~--~~~~~~~sG~~Ai~~~l~al-l~~G-D~Vvv~  106 (394)
T PRK09028         57 RRGTPTHFAFQAAIVELEGG--AGTALYPSGAAAISNALLSF-LKAG-DHLLMV  106 (394)
T ss_pred             CCCCchHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH-hCCC-CEEEEE
Confidence            33455566888888887543  46889999999999988632 2223 356554

>PRK07582 cystathionine gamma-lyase; Validated

Probab=86.27  E-value=4  Score=28.02  Aligned_cols=51  Identities=20%  Similarity=0.178  Sum_probs=35.0

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ++.++++...+|.++|.+.. .  ..+.+..||++|+..++... .-.| .+||+.
T Consensus        45 y~ry~~p~~~~Le~~lA~l~-~--~~~v~~~sG~~Ai~~~l~al-l~~G-d~Vl~~   95 (366)
T PRK07582         45 YGRASNPTWRALEAALGELE-G--AEALVFPSGMAAITAVLRAL-LRPG-DTVVVP   95 (366)
T ss_pred             eECCCCccHHHHHHHHHHHc-C--CCEEEECCHHHHHHHHHHHh-cCCC-CEEEEe
Confidence            34567777888999999887 2  35667799999999887532 2223 355553

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=86.13  E-value=1.7  Score=30.49  Aligned_cols=57  Identities=18%  Similarity=0.146  Sum_probs=35.4

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk   67 (83)
                      +|+|.+++.++.-. |. +.-+...+.++.+.|..++..+ .+-+.+..||+-++|+|+-
T Consensus        17 ~~~V~~am~~~~~~-h~-s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~   74 (383)
T COG0075          17 PPRVLLAMARPMVG-HR-SPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVA   74 (383)
T ss_pred             CHHHHHHhcCCCCC-CC-CHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHH
Confidence            46666666553322 11 1122345567777777777643 3456677899999999886

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=85.85  E-value=3.7  Score=28.08  Aligned_cols=50  Identities=22%  Similarity=0.232  Sum_probs=35.6

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      ++.++++...+|.++|.++.+.  +..+.++||++|+..++.+.  -.| .+||.
T Consensus        46 y~r~~~pt~~~le~~la~l~g~--~~~~~~~sG~~ai~~~~~ll--~~G-d~Vl~   95 (366)
T PRK08247         46 YSRTGNPTRGVLEQAIADLEGG--DQGFACSSGMAAIQLVMSLF--RSG-DELIV   95 (366)
T ss_pred             ccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHh--CCC-CEEEE
Confidence            4556777888999999998854  34688899999998776432  234 35554

>PRK05939 hypothetical protein; Provisional

Probab=85.75  E-value=8  Score=26.98  Aligned_cols=52  Identities=8%  Similarity=0.036  Sum_probs=35.5

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ++...++....|.+.|.++-+.  ......+||..|+..++... .-.|. +||+.
T Consensus        41 Y~r~g~p~~~~lE~~la~leg~--~~~v~~ssG~~Ai~~~l~al-l~~Gd-~Vv~~   92 (397)
T PRK05939         41 YARQGTPTTAALEAKITKMEGG--VGTVCFATGMAAIAAVFLTL-LRAGD-HLVSS   92 (397)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHH-cCCCC-EEEEC
Confidence            3455677788899999998754  34666788999999888643 22233 55553

>PRK05957 aspartate aminotransferase; Provisional

Probab=85.75  E-value=9.2  Score=26.21  Aligned_cols=61  Identities=15%  Similarity=-0.070  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHHHhhc---c-CCCCcchHHHHHHHHHHhhCCCC---CCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN---T-NNRFLHDNLVLCARKLASLLPDP---LSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~---~-~~~~~~~~~~~la~~l~~~~p~~---~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+.+.+++.+.+....   + ......+....+++.+.+..+..   .+.+++++++++++..++...
T Consensus        42 ~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~  109 (389)
T PRK05957         42 PPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAI  109 (389)
T ss_pred             CHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHh
Confidence            4567888877665431   1 11112244566777776665432   457999999999998877644

>PRK07683 aminotransferase A; Validated

Probab=85.70  E-value=9.2  Score=26.18  Aligned_cols=61  Identities=18%  Similarity=0.007  Sum_probs=37.2

Q ss_pred             CHHHHHHHHHHHHhhc--cC-CCCcchHHHHHHHHHHhhC--CCCCC-eEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--TN-NRFLHDNLVLCARKLASLL--PDPLS-VCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~--p~~~~-~v~f~~sGseA~e~Alk~a   69 (83)
                      .+.+.+++.+.++...  .. .....+....+++.+....  +.+.+ .+++++++++|+..++...
T Consensus        43 ~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l  109 (387)
T PRK07683         43 PSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTI  109 (387)
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh
Confidence            3577888888776431  11 1112233455666664332  22344 7999999999999988754

>PRK06107 aspartate aminotransferase; Provisional

Probab=85.31  E-value=7.2  Score=26.85  Aligned_cols=60  Identities=13%  Similarity=-0.160  Sum_probs=38.1

Q ss_pred             CHHHHHHHHHHHHhh--ccCC-CCcchHHHHHHHHHHhhCCC--CCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALL--NTNN-RFLHDNLVLCARKLASLLPD--PLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~--~~~~-~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .|.+.+++.+.++..  .+.. ....+....+++.+.+..+.  ..+.|.+++++++|+..+++.
T Consensus        48 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~  112 (402)
T PRK06107         48 PDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMA  112 (402)
T ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHH
Confidence            467778887777542  1111 11224446677777655432  345799999999999999863

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=85.31  E-value=3.6  Score=28.48  Aligned_cols=60  Identities=10%  Similarity=-0.007  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHhh--c-c-CCCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALL--N-T-NNRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~--~-~-~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      |.+.+++.+.++..  . + ......+....+++.+....  +-..+.|.+++++++++..+++..
T Consensus        52 ~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l  117 (409)
T PLN00143         52 NIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVL  117 (409)
T ss_pred             HHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHH
Confidence            55778887777642  1 1 11112234455665554432  223468999999999999988843

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=85.19  E-value=5.8  Score=27.65  Aligned_cols=41  Identities=15%  Similarity=0.035  Sum_probs=32.4

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ++.+.++....|.++|.++.+.  +.+...+||++|+..++..
T Consensus        58 y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssG~~Ai~~~l~a   98 (398)
T PRK08249         58 YSRNTNPTVQAFEEKVRILEGA--EAATAFSTGMAAISNTLYT   98 (398)
T ss_pred             ccCCCChHHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHH
Confidence            4456677788999999998853  4678889999999988763

>KOG2433|consensus

Probab=85.14  E-value=2.9  Score=29.91  Aligned_cols=61  Identities=25%  Similarity=0.189  Sum_probs=39.0

Q ss_pred             CHHHHHHHHHHHHhh--ccCCC-CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206           9 HPAVVKAACTQLALL--NTNNR-FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~--~~~~~-~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      |.+|.+++.+.-++-  ...+. +....  +..=-|.+++.- ..++.+.+||+|-.+.+-.+||.+
T Consensus       435 HrEiQqaLvdi~DKpA~FVGSrQWIGSt--Eis~vLn~ll~~-~skil~v~sGaEva~~~rELA~HF  498 (577)
T KOG2433|consen  435 HREIQQALVDIQDKPAKFVGSRQWIGST--EISFVLNELLKL-ESKILAVNSGAEVAERVRELARHF  498 (577)
T ss_pred             HHHHHHHHHhccCcccceecccceecch--hHHHHHHHHhcc-ceEEEEeccccHHHHHHHHHHHHh
Confidence            678888888866653  12222 21111  222223444432 349999999999999999999987

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=85.06  E-value=5.6  Score=27.14  Aligned_cols=62  Identities=21%  Similarity=0.176  Sum_probs=34.2

Q ss_pred             CCCHHHHHHHHHHHH-hhc--c-CCC-Cc-c---hHHHH-HHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           7 HCHPAVVKAACTQLA-LLN--T-NNR-FL-H---DNLVL-CARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         7 h~~p~i~~a~~~~~~-~~~--~-~~~-~~-~---~~~~~-la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +-+|++.+++.+.+. +..  . ... +. .   +...+ ..+.+.+.++.+...+++ +||++|+..++...
T Consensus        30 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~-~sgt~a~~~~l~~l  101 (402)
T cd00378          30 FTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQP-HSGSQANLAVYFAL  101 (402)
T ss_pred             cCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeec-CCcHHHHHHHHHHh
Confidence            347899999887653 211  1 111 11 1   22233 233455666544334444 57999999888754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=85.01  E-value=3.9  Score=29.29  Aligned_cols=61  Identities=15%  Similarity=-0.034  Sum_probs=35.9

Q ss_pred             CHHHHHHHHHHHHhhc-cCCCC-cchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN-TNNRF-LHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+++++++.+.+.... ++... ..+....+++.+...-  .-..+.|+.+++++|++..+++..
T Consensus       164 p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l  228 (517)
T PRK13355        164 PDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSAL  228 (517)
T ss_pred             CHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHh
Confidence            4567888877765432 11111 1223344555553321  123468999999999999988743

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=84.94  E-value=10  Score=26.19  Aligned_cols=59  Identities=22%  Similarity=0.176  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~ar~   71 (83)
                      |++.+++.+.++.+   ..||.+...++.+.+.+... ...+.|+..+...|.++..++....
T Consensus        38 ~~~~~~~~~~~~~~---~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~   97 (356)
T COG0079          38 PKVIEAIRAALDKL---NRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVE   97 (356)
T ss_pred             HHHHHHHHHHHHhh---ccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhc
Confidence            77888888877754   34555556778888877775 4556899899999999987765443

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=84.75  E-value=4.1  Score=28.22  Aligned_cols=41  Identities=22%  Similarity=0.041  Sum_probs=31.8

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ++.+.++...+|.+++.++.+.  +.+..++||++|+..++..
T Consensus        47 y~r~~np~~~~lE~~lA~l~g~--~~~l~~~sG~~Ai~~~l~~   87 (385)
T PRK08574         47 YSREENPTLRPLEEALAKLEGG--VDALAFNSGMAAISTLFFS   87 (385)
T ss_pred             EECCCCccHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHH
Confidence            3455567788899999998854  4667779999999998873

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=84.56  E-value=5.4  Score=26.30  Aligned_cols=39  Identities=18%  Similarity=0.115  Sum_probs=27.7

Q ss_pred             CcchHHHHHHHHHHhhCCCCCCeEEe-eCChHHHHHHHHHHH
Q psy6206          29 FLHDNLVLCARKLASLLPDPLSVCFF-VNSGSEANDLALRLA   69 (83)
Q Consensus        29 ~~~~~~~~la~~l~~~~p~~~~~v~f-~~sGseA~e~Alk~a   69 (83)
                      .+.....++.+++.+.+..  ++++| ++++++++..++...
T Consensus        56 ~~~g~i~~~~~~~A~~~ga--~~~~~~~~Gst~a~~~~l~al   95 (294)
T cd00615          56 DPTGPIKEAQELAARAFGA--KHTFFLVNGTSSSNKAVILAV   95 (294)
T ss_pred             CCChHHHHHHHHHHHHhCC--CCEEEEcCcHHHHHHHHHHHc
Confidence            3456667777888888853  45665 777889998887643

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK06234 methionine gamma-lyase; Provisional

Probab=84.55  E-value=4.8  Score=27.99  Aligned_cols=40  Identities=23%  Similarity=0.121  Sum_probs=32.3

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      +..++++...+|.+.|.+....  +.+..++||++|+..++.
T Consensus        58 Y~r~~~p~~~~Le~~iA~~~g~--~~~l~~~sG~~Ai~~al~   97 (400)
T PRK06234         58 YSRLGNPTSTEVENKLALLEGG--EAAVVAASGMGAISSSLW   97 (400)
T ss_pred             ccCCCCccHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHH
Confidence            4456677788999999998854  468899999999988875

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=84.48  E-value=4.1  Score=28.27  Aligned_cols=41  Identities=22%  Similarity=0.166  Sum_probs=33.3

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ++.++++....|.++|.+..+.  ..+..++||++|+..++..
T Consensus        46 Y~R~~~pt~~~L~~~lA~l~g~--~~~i~~~sg~~Ai~~~l~~   86 (386)
T PRK08045         46 YSRRGNPTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTV   86 (386)
T ss_pred             eeCCCCccHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHH
Confidence            4566777788999999998753  4699999999999998873

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=83.98  E-value=4.1  Score=28.17  Aligned_cols=59  Identities=14%  Similarity=-0.014  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHhhccCCCCc-----chHHHHHHHHHHhhC--------CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLNTNNRFL-----HDNLVLCARKLASLL--------PDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~-----~~~~~~la~~l~~~~--------p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +.+.+++.+.+.... ...|+     .+....+++.+.+..        +-+.+.+.+++++++++..+++..
T Consensus        53 ~~~~~a~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~  124 (412)
T PTZ00433         53 AIQTKALVEAVDSQE-CNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTAL  124 (412)
T ss_pred             HHHHHHHHHHhhcCC-CCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHh
Confidence            456777766665311 11222     233344555554321        123468999999999999988854

>PLN02483 serine palmitoyltransferase

Probab=83.88  E-value=14  Score=26.60  Aligned_cols=61  Identities=10%  Similarity=0.029  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHhhcc---CCC--C-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           6 GHCHPAVVKAACTQLALLNT---NNR--F-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~~---~~~--~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      +..+|.+.+++.+.+++...   .+.  + .++...++.+.|.+.... .+.+.| ++|+.++..++..
T Consensus       114 ~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~-~~ai~~-~~G~~an~~~i~a  180 (489)
T PLN02483        114 AAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK-PAAIVF-GMGYATNSTIIPA  180 (489)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC-CcEEEE-CCHHHHHHHHHHH
Confidence            33467788888888877521   222  2 356778899999998863 334444 7788888766653

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=83.67  E-value=5.7  Score=27.49  Aligned_cols=40  Identities=15%  Similarity=0.021  Sum_probs=30.5

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      ++.+.++....|.+++.++.+.  +..++.+||+.|+..++.
T Consensus        44 y~r~~~p~~~~Le~~la~l~g~--~~al~~~SG~~Al~~~l~   83 (380)
T PRK06176         44 YSRSGNPTRFALEELIADLEGG--VKGFAFASGLAGIHAVFS   83 (380)
T ss_pred             ccCCCChhHHHHHHHHHHHhCC--CCEEEECCHHHHHHHHHH
Confidence            3455677788999999998753  356777999999987664

>PRK06207 aspartate aminotransferase; Provisional

Probab=83.31  E-value=11  Score=26.06  Aligned_cols=60  Identities=17%  Similarity=-0.005  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhhc---cC-CCCcchHHHHHHHHHHhhCC--CCC-CeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLN---TN-NRFLHDNLVLCARKLASLLP--DPL-SVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~~---~~-~~~~~~~~~~la~~l~~~~p--~~~-~~v~f~~sGseA~e~Alk~a   69 (83)
                      |.+.+++.+.+....   +. .....+....+++.+.+..+  -+. +.|++++++++++..+++..
T Consensus        56 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l  122 (405)
T PRK06207         56 PGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAAT  122 (405)
T ss_pred             HHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHh
Confidence            557777777665421   11 11122344667777766543  233 68999999999999888743

>PRK07777 aminotransferase; Validated

Probab=83.17  E-value=12  Score=25.50  Aligned_cols=58  Identities=14%  Similarity=-0.042  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHhhc--cC-CCCcchHHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLN--TN-NRFLHDNLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALR   67 (83)
Q Consensus        10 p~i~~a~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk   67 (83)
                      +.+.+++.+.+....  +. .....+....+++.+.+..+  ...+ +|+++++|++|++.++.
T Consensus        40 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~  103 (387)
T PRK07777         40 PEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVL  103 (387)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHH
Confidence            556666666554321  11 11112333445555544332  2223 69999999999998886

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=83.03  E-value=6.4  Score=27.25  Aligned_cols=41  Identities=24%  Similarity=0.135  Sum_probs=30.2

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ..++++...+|.++|.+....  +.....+||++|+..++...
T Consensus        56 ~r~~~p~~~~Le~~lA~~~g~--~~~i~~~sG~~Ai~~~l~al   96 (388)
T PRK07811         56 ARTGNPTRTALEEQLAALEGG--AYGRAFSSGMAATDCLLRAV   96 (388)
T ss_pred             cCCCCccHHHHHHHHHHHhCC--CceEEeCCHHHHHHHHHHHH
Confidence            345566678899999998754  34455589999999999754

>PRK09265 aminotransferase AlaT; Validated

Probab=82.74  E-value=13  Score=25.57  Aligned_cols=61  Identities=10%  Similarity=-0.003  Sum_probs=33.4

Q ss_pred             CHHHHHHHHHHHHhhc-cCCCC-cchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN-TNNRF-LHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|++.+++.+.+.... +.... ..+....+++.+...-  +...+.|.+++++++++..+++..
T Consensus        51 ~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~  115 (404)
T PRK09265         51 PDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQAL  115 (404)
T ss_pred             CHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHh
Confidence            4567777776554331 11111 1122234444443211  233568999999999999888754

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=82.65  E-value=10  Score=26.35  Aligned_cols=41  Identities=15%  Similarity=0.149  Sum_probs=31.0

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ...++++...+|.++|.++.+.  +....++||+.|+..++..
T Consensus        59 y~r~~~p~~~~Le~~lA~l~G~--~~~~~~~sG~~Ai~~~l~~   99 (398)
T PRK07504         59 YSRYSNPTVDMFEKRMCALEGA--EDARATASGMAAVTAAILC   99 (398)
T ss_pred             eecCCCchHHHHHHHHHHHhCC--CeeeEecCHHHHHHHHHHH
Confidence            3456677788999999998743  4455678999999877753

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=82.27  E-value=4  Score=27.37  Aligned_cols=42  Identities=2%  Similarity=-0.192  Sum_probs=33.7

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ..|+.+...+|.+.|.+......++|..+++++|++..++.+
T Consensus        35 ~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~   76 (332)
T PRK06425         35 SIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY   76 (332)
T ss_pred             ccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH
Confidence            345655678899999988766667899999999999998864

>PRK07324 transaminase; Validated

Probab=82.15  E-value=8.8  Score=26.22  Aligned_cols=58  Identities=17%  Similarity=0.040  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +.+ +++.+++......... ..-..+|.+.+.+... .+.+.|.+++++++|+..++...
T Consensus        42 ~~~-~~~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l  100 (373)
T PRK07324         42 KNP-EAFYQELGQKKLTYGW-IEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYAL  100 (373)
T ss_pred             cch-HHHHHHHhcCCccCCC-CCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh
Confidence            345 6777766653211010 1112245555555432 23468999999999999988744

>PRK08354 putative aminotransferase; Provisional

Probab=81.75  E-value=13  Score=24.71  Aligned_cols=52  Identities=12%  Similarity=-0.024  Sum_probs=36.0

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .|.+.+++.+.+....   .++  ....+.+.+.+..+   +.+..+++++|++...+.+
T Consensus        22 p~~~~~a~~~~~~~~~---~yp--~~~~l~~~ia~~~~---~~I~vt~G~~~al~~~~~~   73 (311)
T PRK08354         22 PEWLDEMFERAKEISG---RYT--YYEWLEEEFSKLFG---EPIVITAGITEALYLIGIL   73 (311)
T ss_pred             CHHHHHHHHHHHHHhh---cCC--ChHHHHHHHHHHHC---CCEEECCCHHHHHHHHHHh
Confidence            5788888877655432   233  23457777777765   3799999999999877643

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=81.53  E-value=7.1  Score=27.86  Aligned_cols=53  Identities=4%  Similarity=0.064  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          12 VVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        12 i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      +.+++.+.+.....  .| .++-..+|.+.+++...  .+.+.++++|++|+..++..
T Consensus        59 ~~~a~~~a~~~g~~--~Y~~~~g~~~Lreaia~~~~--~~~vv~t~ggt~A~~~~~~a  112 (460)
T PRK13238         59 MSDRQWAAMMRGDE--AYAGSRSYYRLEDAVKDIFG--YPYTIPTHQGRAAEQILFPV  112 (460)
T ss_pred             hhHHHHHHHHhCCc--ccCCCCCHHHHHHHHHHHhC--CCcEEECCCHHHHHHHHHHH
Confidence            55555555543221  12 22345677788888774  45799999999999998764

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=81.52  E-value=4.7  Score=29.33  Aligned_cols=42  Identities=24%  Similarity=0.124  Sum_probs=28.8

Q ss_pred             chHHHHHHHHHHhhCCC-------------CCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206          31 HDNLVLCARKLASLLPD-------------PLSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        31 ~~~~~~la~~l~~~~p~-------------~~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      ++....+.+.|.+++..             +..--.|+++||+||=.|+..||..
T Consensus       128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~  182 (522)
T TIGR03799       128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNR  182 (522)
T ss_pred             HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHH
Confidence            34445566666666521             0123578999999999999999975

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK08114 cystathionine beta-lyase; Provisional

Probab=81.51  E-value=9.7  Score=26.75  Aligned_cols=40  Identities=15%  Similarity=0.003  Sum_probs=31.5

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      ++...+|....|.++|.++-+  ....++.+||..|+..++.
T Consensus        56 YsR~~nPt~~~le~~la~LEg--~~~a~~~~SGmaAi~~~~~   95 (395)
T PRK08114         56 YGRRGTLTHFSLQEAMCELEG--GAGCALYPCGAAAVANAIL   95 (395)
T ss_pred             ccCCCChhHHHHHHHHHHHhC--CCeEEEEhHHHHHHHHHHH
Confidence            455667788889999988653  3577888889999999886

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=80.70  E-value=18  Score=25.86  Aligned_cols=64  Identities=9%  Similarity=0.021  Sum_probs=36.3

Q ss_pred             CCCHHHHHHHHHHHHhh-ccCC------CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206           7 HCHPAVVKAACTQLALL-NTNN------RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~-~~~~------~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~   71 (83)
                      |-.|.|.+++.+..... .++.      ....+...++.+.+++.++.+ +-.++.++|+.+.-.++.++|.
T Consensus        81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~-~~~l~~~~GA~a~~~~l~~~r~  151 (481)
T PRK04366         81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD-AVTLQPAAGAHGELTGLLMIRA  151 (481)
T ss_pred             CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC-ceEEEeCcHHHHHHHHHHHHHH
Confidence            34577888887642111 1111      011234466777888887532 3355567888887776666654

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=80.68  E-value=11  Score=26.00  Aligned_cols=38  Identities=26%  Similarity=0.155  Sum_probs=29.0

Q ss_pred             CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206          28 RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus        28 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      ...++...+|.+.+.++...  +.+.+.+||+.|+..++.
T Consensus        43 r~~~p~~~~le~~la~l~g~--~~~l~~~sG~~al~~~l~   80 (378)
T TIGR01329        43 RSGNPTRTALESLLAKLDKA--DRAFAFSSGMAALDVITR   80 (378)
T ss_pred             CCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH
Confidence            34466678899999998754  567778999999887665

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=80.14  E-value=12  Score=26.21  Aligned_cols=42  Identities=21%  Similarity=0.098  Sum_probs=30.5

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++.+.++....|.++|.++.+.  .....++||++|+..++...
T Consensus        54 y~R~~~p~~~~Le~~lA~l~g~--~~~v~~~sG~~Ai~~~l~al   95 (405)
T PRK08776         54 YTRSGNPTRDLLGEALAELEGG--AGGVITATGMGAINLVLNAL   95 (405)
T ss_pred             ccCCCChHHHHHHHHHHHHhCC--CceEEEcCHHHHHHHHHHHH
Confidence            3455667778899999987754  34567788999998877643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	83
2pb0_A	420	Structure Of Biosynthetic N-Acetylornithine Aminotr		4e-06
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		1e-05
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		4e-05
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		4e-05
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		6e-05
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		8e-05
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		8e-05
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		2e-04
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		3e-04
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		3e-04

>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 5   VGHCHPAVVKAACTQ-LALLNTNNRFLHDNLVLCARKL--ASLLPDPLSVCFFVNSGSEA 61
           +GHCHPA+V+A  +Q   L +T+N F ++  +   RKL  A+     L    F+NSG+EA
Sbjct: 71  LGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVL----FMNSGTEA 126
Query: 62  NDLALRLAR 70
           N+ A +LAR
Sbjct: 127 NETAFKLAR 135

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 5   VGHCHPAVVKA----ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
           +GH +P VV+A    A T +A+  T    +        R L ++LP  L+  F VNSG+E
Sbjct: 59  LGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFY---RTLTAILPPELNRVFPVNSGTE 115
Query: 61  ANDLALRLARVHT 73
           AN+ AL+ AR HT
Sbjct: 116 ANEAALKFARAHT 128

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1   MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
           MS  +GHCHP +V         L+   +  L   +V  A +LA++ P  L     +++G+
Sbjct: 51  MSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGA 110
Query: 60  EANDLALRLARVHTNNDDVI 79
           E+N+ A+R+A++ T   +++
Sbjct: 111 ESNEAAIRMAKLVTGKYEIV 130

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1   MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
           MS  +GHCHP +V         L+   +  L   +V  A +LA++ P  L     +++G+
Sbjct: 53  MSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGA 112
Query: 60  EANDLALRLARVHTNNDDVI 79
           E+N+ A+R+A++ T   +++
Sbjct: 113 ESNEAAIRMAKLVTGKYEIV 132

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 5   VGHCHPAVVKAACTQLALLNTNNRFL---HDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
           +G+    + + A  Q+  L   N F    H   +  A+KLA L P  L+  FF   GSEA
Sbjct: 69  IGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEA 128
Query: 62  NDLALRLARVHTNN 75
           ND  +R+ R +  N
Sbjct: 129 NDTNIRMVRTYWQN 142

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1   MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
           MS  +GHCHP +V         L+   +  L   +V  A +LA++ P  L     +++G+
Sbjct: 53  MSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLSRPVVDLATRLANITPPGLDRALLLSTGA 112
Query: 60  EANDLALRLARVHTNNDDVI 79
           E+N+ A+R+A++ T   +++
Sbjct: 113 ESNEAAIRMAKLVTGKYEIV 132

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 1   MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
           MS  +GHCHP +V         L+   +  L   +V  A +LA++ P  L     +++G+
Sbjct: 52  MSAVLGHCHPEIVSVIGEYAGKLDHLFSGMLSRPVVDLATRLANITPPGLDRALLLSTGA 111
Query: 60  EANDLALRLARVHTNNDDVI 79
           E+N+ A+R+A++ T   +++
Sbjct: 112 ESNEAAIRMAKLVTGKYEIV 131

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 2   SLPVGHCHPAVVKAACTQLALLNTNNR-FLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
           S+  GHCHP ++ A   Q   L   +R F  D+L +C R L +L          +N+G+E
Sbjct: 57  SVNQGHCHPDILNAMINQAKKLTICSRAFFSDSLGVCERYLTNLF--GYDKVLMMNTGAE 114
Query: 61  ANDLALRLAR 70
           A++ A +L R
Sbjct: 115 ASETAYKLCR 124

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 5   VGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLA-SLLPDPLSVCFFVNSGSEAN 62
           +GH HP + +A   Q +   +T N + ++ ++  A+KL  +   D +   FF NSG+EAN
Sbjct: 53  LGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRV---FFCNSGAEAN 109
Query: 63  DLALRLAR 70
           + AL+LAR
Sbjct: 110 EAALKLAR 117

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 2   SLPVGHCHPAVVKAACTQLALLNTNNR-FLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
           S+  GHCHP ++ A   Q   L   +R F    L +C R L +LL         +N+G+E
Sbjct: 76  SVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL--GYDKVLMMNTGAE 133
Query: 61  ANDLALRLAR 70
           AN+ A +L R
Sbjct: 134 ANETAYKLCR 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	1e-27
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	2e-23
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	2e-20
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	4e-20
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	4e-20
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	2e-19
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	9e-18
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	2e-17
3hmu_A	472	Aminotransferase, class III; structural genomics,	3e-17
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	3e-17
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	4e-17
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	4e-17
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	5e-17
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	1e-16
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	6e-16
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	8e-16
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	1e-15
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	3e-14
1z7d_A	433	Ornithine aminotransferase; structural genomics co	8e-14
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	1e-13
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	2e-13
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	5e-13
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	3e-12
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	4e-12
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	7e-12
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	5e-11
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	6e-11
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	3e-08
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	3e-08
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	2e-07
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	3e-07
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	3e-07
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	4e-07
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	4e-07
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	4e-07
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	5e-07

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score =  102 bits (256), Expect = 1e-27
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 1   MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
           MS  +GHCHP +V         L+   +  L   +V  A +LA++ P  L     +++G+
Sbjct: 53  MSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGA 112

Query: 60  EANDLALRLARVHTNNDDVIT 80
           E+N+ A+R+A++ T   +++ 
Sbjct: 113 ESNEAAIRMAKLVTGKYEIVG 133

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score = 90.3 bits (225), Expect = 2e-23
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 5   VGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEA 61
           +G+ HPA+V A     A     T     +   V  A +L +  P +     +F +SGS+A
Sbjct: 57  LGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDA 116

Query: 62  NDLALRLARVHTNNDDVI 79
           N+ A R     T    VI
Sbjct: 117 NEAAYRAIVKATGRSGVI 134

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score = 81.9 bits (203), Expect = 2e-20
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 5   VGHCHPAVVKAACTQLALL--NTNNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEA 61
           VG+  P VV+A  +Q+            ++  V    +L  L P          NSGSEA
Sbjct: 75  VGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEA 134

Query: 62  NDLALRLARVHTNNDDVIT 80
            + A+++AR HT+   V+ 
Sbjct: 135 VENAVKIARSHTHKPAVVA 153

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score = 81.5 bits (202), Expect = 4e-20
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 5   VGHCHPAVVKAACTQLALL--NTNNRFLHDNLVLCARKLASLLPDPLSVC-FFVNSGSEA 61
           VG  HPAV  A   Q             ++  V  A  L +L P          NSG+EA
Sbjct: 78  VGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEA 137

Query: 62  NDLALRLARVHTNNDDVIT 80
            + A+++AR+ T    V+ 
Sbjct: 138 VENAIKVARLATGRPAVVA 156

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score = 81.1 bits (201), Expect = 4e-20
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 5   VGHCHPAVVKAACTQLALL--NTNNRFLHDNLVLCARKLASLLPDPLSVC-FFVNSGSEA 61
            GH HP VV A   QL  L         ++  +     +   +P   +     V +GSEA
Sbjct: 55  TGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEA 114

Query: 62  NDLALRLARVHTNNDDVIT 80
            + A+++AR  T     I 
Sbjct: 115 VENAVKIARAATKRSGTIA 133

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score = 79.1 bits (196), Expect = 2e-19
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 5   VGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
           +GH +P VV+A   Q   L+               R L ++LP  L+  F VNSG+EAN+
Sbjct: 59  LGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANE 118

Query: 64  LALRLARVHTNNDDVIT 80
            AL+ AR HT     + 
Sbjct: 119 AALKFARAHTGRKKFVA 135

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score = 74.9 bits (185), Expect = 9e-18
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 5   VGHCHPAVVKAACTQLALL---NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
            G  H  ++ AA  Q       +     + D  V+ + KL  + P      F+ NSGSEA
Sbjct: 75  AGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEA 134

Query: 62  NDLALRLAR 70
           ND  +++  
Sbjct: 135 NDTMVKMLW 143

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score = 73.8 bits (182), Expect = 2e-17
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 5   VGHCHPAVVKAACTQLALL---NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
           VG+    +  A  TQ   L   +       +  +  A+ +    P  +S  +F  SGS+A
Sbjct: 65  VGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDA 124

Query: 62  NDLALRLAR 70
           N+  ++L  
Sbjct: 125 NETNIKLIW 133

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score = 73.4 bits (181), Expect = 3e-17
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 5   VGHCHPAVVKAACTQLALL---NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
           +G+    + + A  Q+  L   NT  +  H   +  A+KLA L P  L+  FF   GSEA
Sbjct: 69  IGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEA 128

Query: 62  NDLALRLAR 70
           ND  +R+ R
Sbjct: 129 NDTNIRMVR 137

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score = 73.1 bits (180), Expect = 3e-17
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 2   SLPVGHCHPAVVKAACTQLALLNTNNR-----FLHDNLV-LCARKLASLLPDPLSVCFFV 55
           S+P+G+ HPA+VK       +    NR        +N V      L S+ P  +S    +
Sbjct: 74  SIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITM 133

Query: 56  NSGSEANDLALRLARVHTNN 75
             GS +N+ A +   +   +
Sbjct: 134 ACGSCSNENAFKTIFMWYRS 153

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score = 73.0 bits (180), Expect = 4e-17
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
           +GH    V +    Q A L   +      D L   A +LA  +  P    + V+ GSEA 
Sbjct: 43  IGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEAT 102

Query: 63  DLALRLAR 70
           + A++LAR
Sbjct: 103 ESAVKLAR 110

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score = 73.1 bits (180), Expect = 4e-17
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 2   SLPVGHCHPAVVKAACTQLALLN------TNNRFLHDNLVLCARKLASLLPDP-LSVCFF 54
           S  +G   PA+V        L+       +N+      +       A +L DP L   FF
Sbjct: 65  SSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFF 124

Query: 55  VNSGSEANDLALRLARVHTNN 75
           V  G+ A + AL+ A    + 
Sbjct: 125 VEGGALAVENALKAAFDWKSR 145

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score = 72.6 bits (179), Expect = 5e-17
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 5   VGHCHPAVVKAACTQLALL---NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
           VG+      +AA  Q+  L   NT  +  H  +V  +  LA + P      F+ NSGSE+
Sbjct: 64  VGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSES 123

Query: 62  NDLALRLAR 70
            D  +R+ R
Sbjct: 124 VDTMIRMVR 132

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score = 71.5 bits (176), Expect = 1e-16
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 7   HCHPAVVKAACTQLALL--NTNNRFLHDNLVLCARKLASLLPDPLSV-CFFVNSGSEAND 63
             HP V+K    Q+  L     N F +   +  A+KL +  P       FF NSG+EA +
Sbjct: 59  PSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIE 118

Query: 64  LALRLARVHTNNDDVIT 80
            ++++ + +T    +I 
Sbjct: 119 ASIKVVK-NTGRKYIIA 134

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score = 69.5 bits (171), Expect = 6e-16
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 5   VGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
            G+    + +AA  QL  L+       H+  +  A KL   L     + FF NSGSEAN+
Sbjct: 63  SGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYVI-FFSNSGSEANE 121

Query: 64  LALRLAR 70
            A ++AR
Sbjct: 122 TAFKIAR 128

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score = 69.1 bits (170), Expect = 8e-16
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 4   PVGHCHPAVVKAACTQLALLNTNNRF--LHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
             GH    + +A   QL+ L+ +  F   H      A K+  L P  L+  FF +SGSE 
Sbjct: 63  GAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSEC 122

Query: 62  NDLALRLAR 70
              A+++ R
Sbjct: 123 ALTAVKMVR 131

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score = 69.2 bits (170), Expect = 1e-15
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 4   PVGHCHPAVVKAACTQLALLNTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
            VG+    +V A   Q  +L   + +          A K+A+L P  L+  FF   GS A
Sbjct: 67  QVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTA 126

Query: 62  NDLALRLAR 70
            D ALR + 
Sbjct: 127 VDSALRFSE 135

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score = 64.5 bits (158), Expect = 3e-14
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 6   GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           GH HP ++ A   Q   +  T+  F  D L     K+A L      +   +N+G+EA + 
Sbjct: 51  GHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT--NKEMVLPMNTGAEAVET 108

Query: 65  ALRLAR 70
           A++ AR
Sbjct: 109 AIKTAR 114

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score = 63.4 bits (155), Expect = 8e-14
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 6   GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           GHCHP ++ A   Q   L   +  F    L +C R L +LL         +N+G+EAN+ 
Sbjct: 80  GHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL--GYDKVLMMNTGAEANET 137

Query: 65  ALRLAR 70
           A +L R
Sbjct: 138 AYKLCR 143

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score = 63.4 bits (155), Expect = 1e-13
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 6   GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           GHCHP +V A  +Q+  L  T+  F ++ L      +  L          +N+G EA + 
Sbjct: 91  GHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGET 148

Query: 65  ALRLAR 70
           A +LAR
Sbjct: 149 ACKLAR 154

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score = 62.2 bits (152), Expect = 2e-13
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 5   VGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAN 62
            GH    +  A   QL  +   T     +      A  L  + P  L+  F+ +SG+EA 
Sbjct: 58  HGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAM 117

Query: 63  DLALRLAR 70
           ++AL++A 
Sbjct: 118 EIALKMAF 125

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score = 61.3 bits (150), Expect = 5e-13
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 6   GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           GH +P + +A   Q+  LL+ +N + +      A KL         V FF NSG+E+ + 
Sbjct: 43  GHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKV-FFANSGTESVEA 101

Query: 65  ALRLARVH 72
           A++LAR +
Sbjct: 102 AIKLARKY 109

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score = 59.1 bits (144), Expect = 3e-12
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 6   GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           GH HP +V+A   Q   L++ +N F +   +  A  L+          FF N+G+EAN+ 
Sbjct: 55  GHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKN--TFGGKVFFANTGTEANEA 112

Query: 65  ALRLAR 70
           A+++AR
Sbjct: 113 AIKIAR 118

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score = 58.7 bits (143), Expect = 4e-12
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 6   GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
           G+ H         Q+  LL+T+N + ++N+   A+ LA      L   FF NSG+E+ + 
Sbjct: 51  GYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKA--SALERVFFTNSGTESIEG 108

Query: 65  ALRLAR 70
           A++ AR
Sbjct: 109 AMKTAR 114

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score = 57.9 bits (141), Expect = 7e-12
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 7/68 (10%)

Query: 6   GHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPD--PLSVCFFVNSGSEAN 62
           GHCHPA+V+A  +Q   L +T+N F ++     A +L   L D        F+NSG+EAN
Sbjct: 72  GHCHPALVEALKSQGETLWHTSNVFTNEP----ALRLGRKLIDATFAERVLFMNSGTEAN 127

Query: 63  DLALRLAR 70
           + A +LAR
Sbjct: 128 ETAFKLAR 135

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score = 55.7 bits (135), Expect = 5e-11
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 6   GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
           GH HPA+ +A  TQL ++N        H+     A+ L  + P  L   FF +SGS + +
Sbjct: 90  GHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVE 149

Query: 64  LALRLA 69
           +A ++A
Sbjct: 150 VAAKMA 155

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score = 55.2 bits (134), Expect = 6e-11
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 6   GHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEAND 63
           G+ HP +  A  +Q+  ++        H   +   RKL ++ P PL   F  +SGS A +
Sbjct: 58  GYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVE 117

Query: 64  LALRLA 69
           +A+++A
Sbjct: 118 VAMKMA 123

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 6   GH-CHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEA 61
                  + +      A          +++  + CA  L   +     S  +F ++GS A
Sbjct: 395 DPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTA 454

Query: 62  NDLALRLAR 70
            ++AL++A 
Sbjct: 455 IEIALKMAF 463

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465

 Score = 47.6 bits (114), Expect = 3e-08
 Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 26/87 (29%)

Query: 5   VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
            GH HP +  A              T+                L A  +    P  + + 
Sbjct: 114 FGHSHPVIRAAVERALAVGLNLSTQTENE-------------ALFAEAVCDRFP-SIDLV 159

Query: 53  FFVNSGSEANDLALRLARVHTNNDDVI 79
            F NSG+EAN +AL  A   T    V+
Sbjct: 160 RFTNSGTEANLMALATATAITGRKTVL 186

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 5   VGHCHPAVVKAACTQLALLNTNNRFL----HDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
           +GH HP V  A    L+     +       H   V  A ++ +  P  +    F  SG+E
Sbjct: 71  LGHGHPRVNAAIAEALS-----HGVQYAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTE 124

Query: 61  ANDLALRLARVHTNNDDVI 79
              LALR+AR  T    ++
Sbjct: 125 TTLLALRVARAFTGRRMIL 143

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 26/87 (29%)

Query: 5   VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
           +GH HP V+              A + L              V  A+K+    P  + + 
Sbjct: 66  LGHAHPKVLARVRETLERGLTFGAPSPLE-------------VALAKKVKRAYP-FVDLV 111

Query: 53  FFVNSGSEANDLALRLARVHTNNDDVI 79
            FVNSG+EA   ALRLAR +T    ++
Sbjct: 112 RFVNSGTEATMSALRLARGYTGRPYIV 138

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 26/87 (29%)

Query: 5   VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
           +GH HP V++A            A  +               VL A K+   +     + 
Sbjct: 70  LGHKHPRVLEAVEEALARGWLYGAPGEAE-------------VLLAEKILGYVK-RGGMI 115

Query: 53  FFVNSGSEANDLALRLARVHTNNDDVI 79
            FVNSG+EA   A+RLAR +T  D ++
Sbjct: 116 RFVNSGTEATMTAIRLARGYTGRDLIL 142

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427

 Score = 44.4 bits (106), Expect = 4e-07
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 26/87 (29%)

Query: 5   VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
            GH HP V++A            A   L               + A  +   +P  + + 
Sbjct: 66  CGHAHPEVIEALKVAMEKGTSFGAPCALE-------------NVLAEMVNDAVP-SIEMV 111

Query: 53  FFVNSGSEANDLALRLARVHTNNDDVI 79
            FVNSG+EA    LR+ R +T  D +I
Sbjct: 112 RFVNSGTEACMAVLRIMRAYTGRDKII 138

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434

 Score = 44.4 bits (106), Expect = 4e-07
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 26/87 (29%)

Query: 5   VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
            GH HP + KA              T L              V  A+ L   +P  L   
Sbjct: 69  TGHAHPHITKAITTAAENGVLYGTPTALE-------------VKFAKMLKEAMP-ALDKV 114

Query: 53  FFVNSGSEANDLALRLARVHTNNDDVI 79
            FVNSG+EA    +R+AR +T    ++
Sbjct: 115 RFVNSGTEAVMTTIRVARAYTGRTKIM 141

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429

 Score = 44.4 bits (106), Expect = 4e-07
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 26/87 (29%)

Query: 5   VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
            GH +  VV+A            A T++                 A+ +   +P  + + 
Sbjct: 67  HGHANDRVVEALKAVAERGTSFGAPTEIE-------------NKLAKLVIERVP-SIEIV 112

Query: 53  FFVNSGSEANDLALRLARVHTNNDDVI 79
             VNSG+EA   ALRLAR +T  + ++
Sbjct: 113 RMVNSGTEATMSALRLARGYTGRNKIL 139

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429

 Score = 44.0 bits (105), Expect = 5e-07
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 26/87 (29%)

Query: 5   VGHCHPAVVKA------------ACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVC 52
           +GH HPA+ +A            A T++              V  A+ +  L+P  + + 
Sbjct: 67  LGHNHPAIRQAVIEAVERGLSFGAPTEME-------------VKMAQLVTDLVP-TMDMV 112

Query: 53  FFVNSGSEANDLALRLARVHTNNDDVI 79
             VNSG+EA   A+RLAR +T  D +I
Sbjct: 113 RMVNSGTEATMSAIRLARGYTGRDKII 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.92
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.92
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.89
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.87
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.8
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.79
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.78
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.77
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.77
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.61
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.75
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.74
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.73
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.73
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.72
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.72
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.71
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.69
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.69
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.67
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.64
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.63
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.62
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.62
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.61
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.59
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.57
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.57
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.57
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.54
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.53
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.49
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.43
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.42
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.39
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.25
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.25
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.18
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.07
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	98.55
1svv_A	359	Threonine aldolase; structural genomics, structura	98.51
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	98.33
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	98.31
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	98.28
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	98.27
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	98.25
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	98.2
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	98.18
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	98.17
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	98.14
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	98.14
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	98.13
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	98.12
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	98.09
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	98.08
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	98.04
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	98.03
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	98.01
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	98.01
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	97.98
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	97.96
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	97.96
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	97.91
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	97.91
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	97.9
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	97.89
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	97.89
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	97.88
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	97.88
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	97.87
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	97.87
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	97.87
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	97.87
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	97.85
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	97.85
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	97.83
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	97.82
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	97.82
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	97.81
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	97.81
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	97.81
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	97.8
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	97.8
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	97.8
2fnu_A	375	Aminotransferase; protein-product complex, structu	97.79
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	97.78
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	97.77
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	97.77
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	97.76
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	97.76
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	97.73
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	97.69
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	97.67
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	97.67
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	97.66
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	97.66
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	97.65
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	97.65
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	97.63
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	97.61
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	97.6
3ele_A	398	Amino transferase; RER070207001803, structural gen	97.58
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	97.58
3pj0_A	359	LMO0305 protein; structural genomics, joint center	97.55
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	97.55
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	97.55
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	97.55
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	97.53
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	97.53
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	97.51
1iug_A	352	Putative aspartate aminotransferase; wild type, py	97.5
3nra_A	407	Aspartate aminotransferase; structural genomics, j	97.49
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	97.48
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	97.46
1vp4_A	425	Aminotransferase, putative; structural genomics, j	97.45
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	97.45
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	97.44
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	97.44
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	97.44
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	97.43
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	97.43
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	97.43
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	97.42
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	97.41
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	97.39
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	97.39
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	97.35
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	97.35
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	97.35
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	97.34
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	97.33
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	97.32
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	97.31
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	97.31
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	97.29
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	97.29
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	97.27
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	97.27
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	97.26
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	97.2
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	97.16
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	97.15
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	97.15
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	97.14
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	97.14
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	97.14
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	97.14
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	97.13
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	97.12
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	97.12
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	97.11
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	97.08
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	97.04
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	96.09
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	97.0
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	96.98
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	96.96
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	96.95
1o69_A	394	Aminotransferase; structural genomics, unknown fun	96.95
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	96.91
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	96.78
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	96.77
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	96.76
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	96.68
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	96.68
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	96.6
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	96.56
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	96.56
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	96.46
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	96.46
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	96.42
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	96.38
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	96.32
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	96.27
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	96.25
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	96.24
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	96.22
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	96.19
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	96.17
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	96.12
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	96.12
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	96.06
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	96.06
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	96.05
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	96.04
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	96.0
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	95.92
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	95.85
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	95.85
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	95.81
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	95.79
3rq1_A	418	Aminotransferase class I and II; structural genomi	95.73
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	95.66
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	95.61
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	95.51
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	95.32
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	95.14
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	95.01
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	94.91
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	94.54
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	94.49
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	93.97
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	93.75
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	93.59
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	93.52
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	93.46
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	93.44
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	93.4
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	93.23
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	93.09
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	93.06
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	92.55
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	92.3
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	92.17
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	92.08
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	91.73
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	90.96
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	90.91
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	90.09
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	89.76
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	88.66
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	88.63
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	88.22
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	87.71
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	85.17
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	83.38

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.92  E-value=5e-25  Score=152.21  Aligned_cols=83  Identities=24%  Similarity=0.305  Sum_probs=74.4

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-c--CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-T--NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~--~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----   72 (83)
                      |++++||+||+|++|+.+|++++. .  ....++++..+|+++|++++|.++++|||++|||||||.|||+||+|     
T Consensus        77 ~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g  156 (473)
T 4e3q_A           77 WNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEG  156 (473)
T ss_dssp             TTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhhccCCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999983 2  23456899999999999999988999999999999999999999987     


Q ss_pred             -cCCCceEEecC
Q psy6206          73 -TNNDDVITQDQ   83 (83)
Q Consensus        73 -~~r~~ii~~~~   83 (83)
                       ++|++||+|+|
T Consensus       157 ~~~r~~ii~~~~  168 (473)
T 4e3q_A          157 KPQKRKILTRWN  168 (473)
T ss_dssp             CTTCCEEEEETT
T ss_pred             CCCcceEEEeec
Confidence             56789999976

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.92  E-value=6.4e-25  Score=151.08  Aligned_cols=83  Identities=30%  Similarity=0.350  Sum_probs=74.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++|+.+|++++ +.. ...++++..+|+++|.+++|. +.++|+|+||||||||.|||+||.+++|++
T Consensus        74 ~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~  153 (456)
T 4atq_A           74 AVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDA  153 (456)
T ss_dssp             HTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCE
T ss_pred             HHHhcCCCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCe
Confidence            57899999999999999999998 432 345678899999999999996 478999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|+|
T Consensus       154 ii~~~~  159 (456)
T 4atq_A          154 VVAFDH  159 (456)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999975

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.89  E-value=2.4e-23  Score=143.34  Aligned_cols=81  Identities=22%  Similarity=0.142  Sum_probs=72.0

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++|+.+|+++... ...+++...+|+++|++.+|. +++|+|+||||||||.|||+||.|+||++||+
T Consensus        97 ~~~~lGH~hp~v~~Av~~q~~~~~~-~~~~~~~~~~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~  174 (454)
T 4ao9_A           97 TAGVYGHSAPEIRDAVIEAMQGGIN-LTGHNLLEGRLARLICERFPQ-IEQLRFTNSGTEANLMALTAALHFTGRRKIVV  174 (454)
T ss_dssp             GTTTTCSCCHHHHHHHHHHHHTCSC-CCSEESSHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HhhcccCCCHHHHHHHHHHHhcCCC-ccCCcHHHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHHhcccCCeEEE
Confidence            5789999999999999999988632 234566778999999999985 89999999999999999999999999999999


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |+|
T Consensus       175 ~~~  177 (454)
T 4ao9_A          175 FSG  177 (454)
T ss_dssp             ETT
T ss_pred             EeC
Confidence            975

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.87  E-value=1.5e-22  Score=147.12  Aligned_cols=83  Identities=18%  Similarity=0.173  Sum_probs=73.2

Q ss_pred             CccCCCCC-CHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHH-Hhhc--
Q psy6206           1 MSLPVGHC-HPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLA-RVHT--   73 (83)
Q Consensus         1 ~~~~lGh~-~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~a-r~~~--   73 (83)
                      |++++||+ ||+|++|+.+|++++ +. ...+.+++..+|+++|.+.+|.+ +++|||++|||||||.|||+| |+|+  
T Consensus       390 ~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~  469 (831)
T 4a0g_A          390 WTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVD  469 (831)
T ss_dssp             HTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred             hhcCCCCCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhh
Confidence            68999999 999999999999998 43 23567899999999999999966 789999999999999999999 6664  


Q ss_pred             ------------CCCceEEecC
Q psy6206          74 ------------NNDDVITQDQ   83 (83)
Q Consensus        74 ------------~r~~ii~~~~   83 (83)
                                  +|++||+|++
T Consensus       470 ~g~~~~~~~~~~~r~~iI~~~~  491 (831)
T 4a0g_A          470 HNFCEATEEEKHIVVKVIALRG  491 (831)
T ss_dssp             TTC---------CCEEEEEETT
T ss_pred             cCCCccccccccCccEEEEecC
Confidence                        4778999975

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.80  E-value=3.8e-19  Score=122.11  Aligned_cols=83  Identities=27%  Similarity=0.335  Sum_probs=74.0

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCC-CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNN-RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------   72 (83)
                      |++++||+||+|++|+.+|++++. .+. .++++...+|+++|.+..|.+.++|+|++||+||++.|||++|.+      
T Consensus        64 ~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~  143 (476)
T 3i5t_A           64 WCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGR  143 (476)
T ss_dssp             HTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhccCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCC
Confidence            468899999999999999999873 233 577889999999999999877889999999999999999999999      


Q ss_pred             cCCCceEEecC
Q psy6206          73 TNNDDVITQDQ   83 (83)
Q Consensus        73 ~~r~~ii~~~~   83 (83)
                      ++|.+||++++
T Consensus       144 ~~~~~vi~~~~  154 (476)
T 3i5t_A          144 PQKKRIIVRYD  154 (476)
T ss_dssp             TTCCEEEEETT
T ss_pred             CCCCEEEEEcC
Confidence            88999998864

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.79  E-value=5.1e-19  Score=121.50  Aligned_cols=83  Identities=28%  Similarity=0.383  Sum_probs=72.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-c--CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-T--NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~--~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----   72 (83)
                      |++++||+||+|++|+.+|++++. .  ...++++...+|+++|.+..|.+.++|+|++||+||+|.|+|++|.+     
T Consensus        65 ~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g  144 (472)
T 3hmu_A           65 WCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKG  144 (472)
T ss_dssp             HTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcC
Confidence            468999999999999999999873 2  23567888999999999999877889999999999999999999998     


Q ss_pred             -cCCCceEEecC
Q psy6206          73 -TNNDDVITQDQ   83 (83)
Q Consensus        73 -~~r~~ii~~~~   83 (83)
                       ++|.+||+|++
T Consensus       145 ~~~~~~ii~~~~  156 (472)
T 3hmu_A          145 QPEKTVIISRKN  156 (472)
T ss_dssp             CTTCCEEEEETT
T ss_pred             CCCCCEEEEEcC
Confidence             47889998864

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.78  E-value=8.3e-19  Score=119.94  Aligned_cols=83  Identities=27%  Similarity=0.368  Sum_probs=73.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------   72 (83)
                      |++++||+||+|++|+.+|++++ +.. +.++++...+|+++|.+.+|.+.++|+|++||+||+|.|+|+++.+      
T Consensus        85 ~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~  164 (457)
T 3tfu_A           85 WTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGL  164 (457)
T ss_dssp             HTCTTCBTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCC
Confidence            46899999999999999999987 333 4567888999999999999877889999999999999999999998      


Q ss_pred             cCCCceEEecC
Q psy6206          73 TNNDDVITQDQ   83 (83)
Q Consensus        73 ~~r~~ii~~~~   83 (83)
                      +||.+||++++
T Consensus       165 ~g~~~ii~~~~  175 (457)
T 3tfu_A          165 PGKRRLMTWRG  175 (457)
T ss_dssp             TTCCEEEEETT
T ss_pred             CCCceEEEEcC
Confidence            88889998753

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.77  E-value=1.4e-18  Score=118.30  Aligned_cols=83  Identities=30%  Similarity=0.340  Sum_probs=72.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++|+.+|++++ +.. ..++++...+|+++|.+..|.+ .++|+|++||+||++.|+|++|.++||.+
T Consensus        71 ~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~  150 (451)
T 3oks_A           71 AVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPA  150 (451)
T ss_dssp             HTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCE
T ss_pred             cccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCe
Confidence            36789999999999999999887 332 3567888899999999999853 57999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||++++
T Consensus       151 ii~~~~  156 (451)
T 3oks_A          151 VVAFDH  156 (451)
T ss_dssp             EEEETT
T ss_pred             EEEEcC
Confidence            998864

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.77  E-value=1.9e-18  Score=117.83  Aligned_cols=83  Identities=30%  Similarity=0.330  Sum_probs=72.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccC-CCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTN-NRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~-~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++|+.+|++++ +.. ..++++...+|+++|.+..|.+ .++|+|++||+||++.|+|++|.++||.+
T Consensus        74 ~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~  153 (453)
T 4ffc_A           74 AVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPA  153 (453)
T ss_dssp             HTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCE
T ss_pred             ccCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCE
Confidence            36789999999999999999987 332 3567888899999999999854 57999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||++++
T Consensus       154 ii~~~~  159 (453)
T 4ffc_A          154 VVAFDN  159 (453)
T ss_dssp             EEEETT
T ss_pred             EEEEcC
Confidence            998864

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.61  E-value=5.8e-20  Score=126.73  Aligned_cols=81  Identities=31%  Similarity=0.352  Sum_probs=72.2

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++|+.+|+++.. ...++++...+|+++|++..| +.++|+|++||+||+|.|+|+||.++||.+||+
T Consensus       110 ~~~~lGh~~p~V~~Av~~q~~~~~-~~~~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~  187 (465)
T 2yky_A          110 TAGLFGHSHPVIRAAVERALAVGL-NLSTQTENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAITGRKTVLA  187 (465)
Confidence            457899999999999999998852 235678888999999999998 578999999999999999999999999999999


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |++
T Consensus       188 ~~~  190 (465)
T 2yky_A          188 FDG  190 (465)
Confidence            874

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.75  E-value=1.1e-17  Score=112.69  Aligned_cols=81  Identities=30%  Similarity=0.342  Sum_probs=71.7

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++++.+|+++... ..++++...+|+++|.+..| +.++|+|++||+||++.|+|++|.+++|.+||+
T Consensus        63 ~~~~lG~~~p~v~~A~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~  140 (429)
T 4e77_A           63 GPMILGHNHPAIRQAVIEAVERGLS-FGAPTEMEVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIK  140 (429)
T ss_dssp             TTCTTCBTCHHHHHHHHHHHTTCSC-CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             hccccCCCCHHHHHHHHHHHHhCcc-cCCCCHHHHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEE
Confidence            4678999999999999999988632 24678888999999999998 578999999999999999999999999999998


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      +++
T Consensus       141 ~~~  143 (429)
T 4e77_A          141 FEG  143 (429)
T ss_dssp             ETT
T ss_pred             EcC
Confidence            753

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.74  E-value=2.5e-17  Score=110.98  Aligned_cols=81  Identities=26%  Similarity=0.198  Sum_probs=71.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++|+.+|+++... ..++++...+|+++|.+..| +.++|+|++||+||++.|+|+++.++++.+||.
T Consensus        63 ~~~~lG~~~p~v~~A~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~  140 (429)
T 3k28_A           63 GPLIHGHANDRVVEALKAVAERGTS-FGAPTEIENKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILK  140 (429)
T ss_dssp             TTCTTCBSCHHHHHHHHHHHHHCSC-CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             hhcccCCCCHHHHHHHHHHHhhCcC-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEE
Confidence            4689999999999999999988632 34678888999999999998 578999999999999999999999999999998


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      +++
T Consensus       141 ~~~  143 (429)
T 3k28_A          141 FIG  143 (429)
T ss_dssp             EET
T ss_pred             ECC
Confidence            753

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.73  E-value=3.3e-17  Score=110.33  Aligned_cols=81  Identities=28%  Similarity=0.285  Sum_probs=71.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++++.+|+++... ..++++...+|+++|.+..| +.++|+|++||+||++.|+|+++.++++.+||+
T Consensus        65 ~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~  142 (434)
T 3l44_A           65 GPIITGHAHPHITKAITTAAENGVL-YGTPTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMK  142 (434)
T ss_dssp             TTCSSCBTCHHHHHHHHHHHHHCSC-CSSCCHHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             hccccCCCCHHHHHHHHHHHHhCcC-CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEE
Confidence            5689999999999999999988632 35678888999999999998 578999999999999999999999999999998


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      +++
T Consensus       143 ~~~  145 (434)
T 3l44_A          143 FAG  145 (434)
T ss_dssp             ETT
T ss_pred             EcC
Confidence            753

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.73  E-value=2.4e-17  Score=112.25  Aligned_cols=83  Identities=20%  Similarity=0.235  Sum_probs=72.0

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-c--CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-T--NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~--~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----   72 (83)
                      |++++||+||+|++|+.+|++++. .  ...++++...+|+++|.+..|.+.++|+|++||+||++.|+|+++.+     
T Consensus        61 ~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g  140 (460)
T 3gju_A           61 YCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLG  140 (460)
T ss_dssp             HTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence            367899999999999999998873 2  23566788899999999998877889999999999999999999988     


Q ss_pred             -cCCCceEEecC
Q psy6206          73 -TNNDDVITQDQ   83 (83)
Q Consensus        73 -~~r~~ii~~~~   83 (83)
                       ++|.+||++++
T Consensus       141 ~~~~~~vi~~~~  152 (460)
T 3gju_A          141 RPEKKKIISRWR  152 (460)
T ss_dssp             CTTCCEEEEETT
T ss_pred             CCCCCEEEEECC
Confidence             57889998763

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.72  E-value=1.8e-17  Score=112.39  Aligned_cols=83  Identities=22%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh---cC-
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH---TN-   74 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~---~~-   74 (83)
                      |++++||+||+|++|+.+|++++ +. ...++++...+|+++|.+..|.+.++|+|++||+||++.|+|+++.+   +| 
T Consensus        54 ~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~  133 (448)
T 3dod_A           54 WLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGK  133 (448)
T ss_dssp             HTCSSCBSCHHHHHHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCC
Confidence            46789999999999999999887 32 34567788899999999999877789999999999999999999998   88 


Q ss_pred             --CCceEEecC
Q psy6206          75 --NDDVITQDQ   83 (83)
Q Consensus        75 --r~~ii~~~~   83 (83)
                        |.+||++++
T Consensus       134 ~~~~~vi~~~~  144 (448)
T 3dod_A          134 PEKQKFIAMKN  144 (448)
T ss_dssp             TTCCEEEEEC-
T ss_pred             CCCCEEEEECC
Confidence              889998763

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.72  E-value=4.7e-17  Score=110.77  Aligned_cols=83  Identities=25%  Similarity=0.297  Sum_probs=72.1

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc--c-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN--T-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~--~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----   72 (83)
                      |++++||+||+|++|+.+|++++.  . ...++++...+|+++|.+..|.+.++|+|++||+||++.|+|+++.+     
T Consensus        60 ~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g  139 (459)
T 4a6r_A           60 WCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQG  139 (459)
T ss_dssp             HTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence            368899999999999999999863  2 23567888899999999999887889999999999999999999987     


Q ss_pred             -cCCCceEEecC
Q psy6206          73 -TNNDDVITQDQ   83 (83)
Q Consensus        73 -~~r~~ii~~~~   83 (83)
                       +++.+||++++
T Consensus       140 ~~~~~~vi~~~~  151 (459)
T 4a6r_A          140 KPEKKTLIGRWN  151 (459)
T ss_dssp             CTTCCEEEEETT
T ss_pred             CCCCCEEEEECC
Confidence             47888998763

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.71  E-value=8.7e-17  Score=108.07  Aligned_cols=81  Identities=26%  Similarity=0.298  Sum_probs=71.2

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++++.+++++... ..++++...+|+++|.+..| +.++|+|++||+||++.|+|++|.++++.+||+
T Consensus        62 ~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~  139 (427)
T 3fq8_A           62 GPAICGHAHPEVIEALKVAMEKGTS-FGAPCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIK  139 (427)
T ss_dssp             TTCTTCBTCHHHHHHHHHHHTTCSC-CSSCCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             hhhccCCCCHHHHHHHHHHHHhCCC-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence            4689999999999999999988632 23477888999999999998 578999999999999999999999999999998


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      +++
T Consensus       140 ~~~  142 (427)
T 3fq8_A          140 FEG  142 (427)
T ss_dssp             EET
T ss_pred             ECC
Confidence            753

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.69  E-value=6.3e-17  Score=109.65  Aligned_cols=82  Identities=28%  Similarity=0.317  Sum_probs=70.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh---c---
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH---T---   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~---~---   73 (83)
                      |++++||+||+|++|+.+|++++ +....++++...+++++|.+..|.+.+ |+|++||+||++.|+|+++.+   +   
T Consensus        59 ~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~  137 (452)
T 3n5m_A           59 WCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEP  137 (452)
T ss_dssp             HTCTTCBCCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             hhccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence            46899999999999999999887 433456788889999999999887666 999999999999999999987   6   


Q ss_pred             CCCceEEecC
Q psy6206          74 NNDDVITQDQ   83 (83)
Q Consensus        74 ~r~~ii~~~~   83 (83)
                      ++.+||++++
T Consensus       138 ~~~~vi~~~~  147 (452)
T 3n5m_A          138 HRYKFMSRYR  147 (452)
T ss_dssp             TCCEEEEETT
T ss_pred             CCCEEEEECC
Confidence            7888998763

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.69  E-value=6.1e-17  Score=111.09  Aligned_cols=72  Identities=22%  Similarity=0.263  Sum_probs=56.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh--ccCCCC----cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL--NTNNRF----LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~--~~~~~~----~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      |++++||+||+|++|+.+|+...  ...+.+    ..+....++++|.+..|.+.++|+|++||+||||.|+|++|+|
T Consensus        73 ~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~  150 (472)
T 1ohv_A           73 SSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMW  150 (472)
T ss_dssp             HTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             hhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHH
Confidence            35789999999999999987543  111112    2456677777788888777889999999999999999999865

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.67  E-value=1.7e-16  Score=107.91  Aligned_cols=83  Identities=25%  Similarity=0.262  Sum_probs=70.0

Q ss_pred             CccCCCCCCHHHH-H-HHHH---HHHhh-ccCCCCcchHHHHHHHHHHhhCC-CCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206           1 MSLPVGHCHPAVV-K-AACT---QLALL-NTNNRFLHDNLVLCARKLASLLP-DPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~-~-a~~~---~~~~~-~~~~~~~~~~~~~la~~l~~~~p-~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      |++++||+||+|+ + |+.+   |+++. +..+.++++...+++++|.+..+ .+.++|+|++||+||++.|+|++|.++
T Consensus        64 ~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~  143 (449)
T 2cjg_A           64 ASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWK  143 (449)
T ss_dssp             HTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHh
Confidence            3578999999999 9 9999   88776 33345677888999999999885 457899999999999999999999876


Q ss_pred             C------------CCceEEecC
Q psy6206          74 N------------NDDVITQDQ   83 (83)
Q Consensus        74 ~------------r~~ii~~~~   83 (83)
                      +            +.+||++++
T Consensus       144 ~~~~~~~~~~~~~~~~Vi~~~~  165 (449)
T 2cjg_A          144 SRHNQAHGIDPALGTQVLHLRG  165 (449)
T ss_dssp             HHHHHHTTSCTTCCCEEEEETT
T ss_pred             cccccccccccCCCCEEEEECC
Confidence            5            778998863

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.64  E-value=2.2e-15  Score=101.25  Aligned_cols=81  Identities=32%  Similarity=0.283  Sum_probs=70.5

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++++.+++++... ..++++...++++.|.+..| +.++|+|++||+||++.|+|+||.++++.+||.
T Consensus        62 ~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~  139 (424)
T 2e7u_A           62 GPLILGHAHPKVLARVRETLERGLT-FGAPSPLEVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVK  139 (424)
T ss_dssp             TTCTTCBTCHHHHHHHHHHHHTCSC-CSSCCHHHHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             cccccCCCCHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence            4578999999999999999987522 34667888999999999987 678999999999999999999999999989998


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      +++
T Consensus       140 ~~~  142 (424)
T 2e7u_A          140 FRG  142 (424)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            763

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.63  E-value=2.2e-15  Score=101.53  Aligned_cols=80  Identities=35%  Similarity=0.312  Sum_probs=69.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++++.+++++.. ...++++...+++++|.+..| +.++|+|++||+||++.|+++||.++++.+||.
T Consensus        66 ~~~~lG~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~  143 (434)
T 2epj_A           66 GPLILGHKHPRVLEAVEEALARGW-LYGAPGEAEVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILK  143 (434)
T ss_dssp             TTCTTCBTCHHHHHHHHHHHHTCS-CCSSCCHHHHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             hcccCCCCCHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEE
Confidence            356899999999999999998852 234677888999999999887 578999999999999999999999999889998


Q ss_pred             ec
Q psy6206          81 QD   82 (83)
Q Consensus        81 ~~   82 (83)
                      ++
T Consensus       144 ~~  145 (434)
T 2epj_A          144 FD  145 (434)
T ss_dssp             EE
T ss_pred             Ec
Confidence            76

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.62  E-value=3.4e-15  Score=100.37  Aligned_cols=81  Identities=31%  Similarity=0.318  Sum_probs=70.8

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------c
Q psy6206           2 SLPVGHCHPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------T   73 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------~   73 (83)
                      ++++||++|+|++++.++++.+. . ...++++...+++++|.+..|.+.++|+|++||+||++.|+|+++.+      +
T Consensus        40 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~  119 (430)
T 3i4j_A           40 VANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP  119 (430)
T ss_dssp             TCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence            67899999999999999998863 2 23567788899999999999877889999999999999999999988      7


Q ss_pred             CCCceEEec
Q psy6206          74 NNDDVITQD   82 (83)
Q Consensus        74 ~r~~ii~~~   82 (83)
                      ++.+||+++
T Consensus       120 ~~~~vi~~~  128 (430)
T 3i4j_A          120 GRFKVITRV  128 (430)
T ss_dssp             TCCEEEEET
T ss_pred             CCcEEEEEe
Confidence            788888765

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.62  E-value=4.6e-15  Score=99.69  Aligned_cols=81  Identities=27%  Similarity=0.475  Sum_probs=70.3

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           2 SLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      ++++||+||+|++++.+++++. +....++++...+++++|.+..|.+.++|+|++||+||++.|+|+++.++++.+||+
T Consensus        54 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~  133 (433)
T 1zod_A           54 SAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVG  133 (433)
T ss_dssp             TCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             ccccCCCCHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEE
Confidence            4689999999999999999876 333456777889999999999986678999999999999999999998888888987


Q ss_pred             ec
Q psy6206          81 QD   82 (83)
Q Consensus        81 ~~   82 (83)
                      ++
T Consensus       134 ~~  135 (433)
T 1zod_A          134 FA  135 (433)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.61  E-value=4.5e-15  Score=100.04  Aligned_cols=81  Identities=27%  Similarity=0.265  Sum_probs=70.8

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206           2 SLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARVHTNNDDV   78 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~i   78 (83)
                      ++++||+||+|++++.+++++. +. ...++++...+++++|.+..|.+. ++++|++||+||++.|+|++|.++++.+|
T Consensus        54 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~v  133 (439)
T 3dxv_A           54 AASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGV  133 (439)
T ss_dssp             TCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEE
T ss_pred             hccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEE
Confidence            5679999999999999999886 22 245677888999999999998667 69999999999999999999999888899


Q ss_pred             EEec
Q psy6206          79 ITQD   82 (83)
Q Consensus        79 i~~~   82 (83)
                      |.++
T Consensus       134 i~~~  137 (439)
T 3dxv_A          134 IAFA  137 (439)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            8875

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.59  E-value=6e-15  Score=99.96  Aligned_cols=79  Identities=32%  Similarity=0.545  Sum_probs=66.8

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh--------
Q psy6206           2 SLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH--------   72 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~--------   72 (83)
                      ++++||+||+|++++.+|+++.. ....++++...+++++|.+..+  .++|+|++||+||++.|+|++|.|        
T Consensus        76 ~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~  153 (433)
T 1z7d_A           76 SVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKIP  153 (433)
T ss_dssp             TTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             hcccCCCCHHHHHHHHHHHHhCCCccCCcCCHHHHHHHHHHHhhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCC
Confidence            46899999999999999998863 3334667888999999999884  679999999999999999999875        


Q ss_pred             cCCCceEEec
Q psy6206          73 TNNDDVITQD   82 (83)
Q Consensus        73 ~~r~~ii~~~   82 (83)
                      .||.+||+++
T Consensus       154 ~gr~~vi~~~  163 (433)
T 1z7d_A          154 ENMAKIVVCK  163 (433)
T ss_dssp             TTCCEEEEET
T ss_pred             CCCCeEEEEe
Confidence            3667898876

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.57  E-value=1.4e-14  Score=96.33  Aligned_cols=79  Identities=27%  Similarity=0.356  Sum_probs=68.2

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----cCC
Q psy6206           2 SLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----TNN   75 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----~~r   75 (83)
                      ++++||+||+|++++.+++++. +..+.++++...+++++|.+..+  .++++|++||+||++.|+++++.+     +++
T Consensus        47 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~  124 (395)
T 3nx3_A           47 VCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA--LERVFFTNSGTESIEGAMKTARKYAFNKGVKG  124 (395)
T ss_dssp             TCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             hccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCC
Confidence            5789999999999999999886 33445677888999999999885  579999999999999999999988     678


Q ss_pred             CceEEec
Q psy6206          76 DDVITQD   82 (83)
Q Consensus        76 ~~ii~~~   82 (83)
                      .+||+++
T Consensus       125 ~~vi~~~  131 (395)
T 3nx3_A          125 GQFIAFK  131 (395)
T ss_dssp             CEEEEET
T ss_pred             CEEEEEc
Confidence            8888765

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.57  E-value=2.6e-14  Score=96.82  Aligned_cols=80  Identities=29%  Similarity=0.339  Sum_probs=69.7

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |+.++||+||+|++++.++++... ...++++...++++.|.+..| +.++|+|++||+||++.|+++||.++++.+||.
T Consensus        67 ~~~~lg~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~  144 (453)
T 2cy8_A           67 GALVLGHGHPRVNAAIAEALSHGV-QYAASHPLEVRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILR  144 (453)
T ss_dssp             TSCTTCBTCHHHHHHHHHHHTTTC-SSCSSCHHHHHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             hhcccCCCCHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence            457799999999999999998752 234677888999999999887 678999999999999999999999988888988


Q ss_pred             ec
Q psy6206          81 QD   82 (83)
Q Consensus        81 ~~   82 (83)
                      ++
T Consensus       145 ~~  146 (453)
T 2cy8_A          145 FE  146 (453)
T ss_dssp             EC
T ss_pred             Ec
Confidence            76

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.57  E-value=8.8e-15  Score=99.39  Aligned_cols=79  Identities=27%  Similarity=0.420  Sum_probs=65.9

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh--------
Q psy6206           2 SLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH--------   72 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~--------   72 (83)
                      ++++||+||+|++++.+|+++.. .+..++++...+++++|.+..+  .++|+|++||+||++.|+|+++.|        
T Consensus        87 ~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~  164 (439)
T 2oat_A           87 AVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGIQ  164 (439)
T ss_dssp             TTTTCBTCHHHHHHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCC
Confidence            56899999999999999998863 3334566778899999999873  679999999999999999999875        


Q ss_pred             cCCCceEEec
Q psy6206          73 TNNDDVITQD   82 (83)
Q Consensus        73 ~~r~~ii~~~   82 (83)
                      .||.+||+++
T Consensus       165 ~g~~~vi~~~  174 (439)
T 2oat_A          165 KYKAKIVFAA  174 (439)
T ss_dssp             TTCCEEEEET
T ss_pred             CCCCeEEEEc
Confidence            2667888876

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.54  E-value=4.2e-14  Score=95.31  Aligned_cols=80  Identities=35%  Similarity=0.480  Sum_probs=67.8

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------c
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------T   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------~   73 (83)
                      |+.++||++|+|++++.+++++. +....++++...+++++|.+..+  .++|+|++||+||++.|+|+++.+      +
T Consensus        67 ~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~~~  144 (420)
T 2pb2_A           67 AVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATF--AERVLFMNSGTEANETAFKLARHYACVRHSP  144 (420)
T ss_dssp             HTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             cccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence            35789999999999999999876 32334567888999999999984  579999999999999999999987      6


Q ss_pred             CCCceEEec
Q psy6206          74 NNDDVITQD   82 (83)
Q Consensus        74 ~r~~ii~~~   82 (83)
                      |+.+||+++
T Consensus       145 g~~~vi~~~  153 (420)
T 2pb2_A          145 FKTKIIAFH  153 (420)
T ss_dssp             TCCEEEEET
T ss_pred             CCCEEEEEe
Confidence            777888775

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.53  E-value=3.7e-14  Score=95.91  Aligned_cols=82  Identities=26%  Similarity=0.366  Sum_probs=69.1

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhcc-CC-CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNT-NN-RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT-----   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~-~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~-----   73 (83)
                      |++++||++|+|++++.+++++... .. .++++...+++++|.+.+|.+.++|+|++||+||++.|+|+++.++     
T Consensus        60 ~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~  139 (449)
T 3a8u_X           60 WTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQ  139 (449)
T ss_dssp             HTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            4678999999999999999987531 12 5667788999999999998777899999999999999999998876     


Q ss_pred             -CCCceEEec
Q psy6206          74 -NNDDVITQD   82 (83)
Q Consensus        74 -~r~~ii~~~   82 (83)
                       ++.+||+++
T Consensus       140 ~~~~~vi~~~  149 (449)
T 3a8u_X          140 ATKTKMIGRA  149 (449)
T ss_dssp             TTCCEEEEET
T ss_pred             CCCCEEEEEC
Confidence             667888765

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.49  E-value=2.2e-13  Score=91.51  Aligned_cols=82  Identities=24%  Similarity=0.344  Sum_probs=68.1

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTN----   74 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~----   74 (83)
                      |++++||.+|+|++++.++++... . .+.++++...+++++|.+..+.+.++|+|++||+||++.|+++++.+++    
T Consensus        53 ~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~  132 (429)
T 1s0a_A           53 WAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE  132 (429)
T ss_dssp             TTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCC
Confidence            357899999999999999998762 2 2355677788999999999986678999999999999999999887654    


Q ss_pred             -CCceEEec
Q psy6206          75 -NDDVITQD   82 (83)
Q Consensus        75 -r~~ii~~~   82 (83)
                       +.+||.++
T Consensus       133 ~~~~vi~~~  141 (429)
T 1s0a_A          133 ARQRFLTFR  141 (429)
T ss_dssp             CCCEEEEET
T ss_pred             CCCeEEEEC
Confidence             66788765

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.43  E-value=5.4e-13  Score=88.41  Aligned_cols=79  Identities=28%  Similarity=0.383  Sum_probs=66.2

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh--------
Q psy6206           2 SLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH--------   72 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~--------   72 (83)
                      +.++||+||+|.+++.++++.. +....++.+...++++.|.+..+  .++++|++||+||++.|+++++..        
T Consensus        47 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~  124 (392)
T 3ruy_A           47 AVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKVE  124 (392)
T ss_dssp             TCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             hhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCC
Confidence            4679999999999999999876 33334567778899999999885  679999999999999999999887        


Q ss_pred             cCCCceEEec
Q psy6206          73 TNNDDVITQD   82 (83)
Q Consensus        73 ~~r~~ii~~~   82 (83)
                      +|+.+||+..
T Consensus       125 ~~~~~vi~~~  134 (392)
T 3ruy_A          125 ANRAEIIVCE  134 (392)
T ss_dssp             TTCCEEEEET
T ss_pred             CCCcEEEEEc
Confidence            6677888754

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.42  E-value=1.3e-12  Score=87.86  Aligned_cols=81  Identities=26%  Similarity=0.338  Sum_probs=66.9

Q ss_pred             CccCCCCC-CHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCC
Q psy6206           1 MSLPVGHC-HPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNND   76 (83)
Q Consensus         1 ~~~~lGh~-~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~   76 (83)
                      |++++||+ +|+|++++.++++... . .+.++++...++++.|.+..+.+ .++|+|++||+||++.|+++++.++ +.
T Consensus        52 ~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~  130 (419)
T 2eo5_A           52 GVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RK  130 (419)
T ss_dssp             GTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CC
T ss_pred             hhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CC
Confidence            35689999 9999999999998762 2 23467777899999999998765 5699999999999999999998877 55


Q ss_pred             ceEEec
Q psy6206          77 DVITQD   82 (83)
Q Consensus        77 ~ii~~~   82 (83)
                      +||.++
T Consensus       131 ~vi~~~  136 (419)
T 2eo5_A          131 YIIAFL  136 (419)
T ss_dssp             EEEEET
T ss_pred             cEEEEC
Confidence            777764

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.39  E-value=3.3e-12  Score=84.78  Aligned_cols=79  Identities=30%  Similarity=0.467  Sum_probs=67.0

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh------cC
Q psy6206           2 SLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH------TN   74 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~------~~   74 (83)
                      +.++||++|++.+++.+++++. +....++.+...++++.|.+..+  .++++|++||+||++.|+++++.+      +|
T Consensus        50 ~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g  127 (406)
T 4adb_A           50 VNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--ADRVFFCNSGAEANEAALKLARKFAHDRYGSH  127 (406)
T ss_dssp             TCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             hcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCC--CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999876 33445667888999999999985  459999999999999999999887      77


Q ss_pred             CCceEEec
Q psy6206          75 NDDVITQD   82 (83)
Q Consensus        75 r~~ii~~~   82 (83)
                      +.+||..+
T Consensus       128 ~~~vi~~~  135 (406)
T 4adb_A          128 KSGIVAFK  135 (406)
T ss_dssp             CCEEEEET
T ss_pred             CcEEEEEC
Confidence            77888754

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.25  E-value=2.7e-11  Score=80.91  Aligned_cols=81  Identities=27%  Similarity=0.368  Sum_probs=65.7

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhhcc-C-CCCcchHHHHHHHHHHhhCCCCC-CeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206           2 SLPVGHCHPAVVKAACTQLALLNT-N-NRFLHDNLVLCARKLASLLPDPL-SVCFFVNSGSEANDLALRLARVHTNNDDV   78 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~~~-~-~~~~~~~~~~la~~l~~~~p~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~i   78 (83)
                      ++++||.+|++.+++.++++.... . ..++++...+|.+.|.+..|++. ++|+|+++|+||++.+++++|.++++.+|
T Consensus        52 ~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~v  131 (426)
T 1sff_A           52 VLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGT  131 (426)
T ss_dssp             TCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeE
Confidence            458999999999999999877522 1 23456778899999999986434 78999999999999999999888777678


Q ss_pred             EEec
Q psy6206          79 ITQD   82 (83)
Q Consensus        79 i~~~   82 (83)
                      |.++
T Consensus       132 i~~~  135 (426)
T 1sff_A          132 IAFS  135 (426)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            7754

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.25  E-value=6.5e-11  Score=78.61  Aligned_cols=79  Identities=28%  Similarity=0.349  Sum_probs=64.5

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-----cCC
Q psy6206           2 SLPVGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-----TNN   75 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-----~~r   75 (83)
                      +.++||.+|++.+++.++++.... ...++.+...++++.|.+..+  .++++|++||+||++.|++.++.+     +|+
T Consensus        51 ~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~  128 (397)
T 2ord_A           51 VNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTF--GGKVFFANTGTEANEAAIKIARKYGKKKSEKK  128 (397)
T ss_dssp             TCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTT--SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCC
Confidence            478999999999999999987622 233556778899999999884  579999999999999999988765     566


Q ss_pred             CceEEec
Q psy6206          76 DDVITQD   82 (83)
Q Consensus        76 ~~ii~~~   82 (83)
                      .+||.++
T Consensus       129 ~~vi~~~  135 (397)
T 2ord_A          129 YRILSAH  135 (397)
T ss_dssp             CEEEEEB
T ss_pred             ceEEEEc
Confidence            6787764

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.18  E-value=1.8e-10  Score=76.36  Aligned_cols=81  Identities=33%  Similarity=0.411  Sum_probs=65.8

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           2 SLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      ++++||.+|++.+++.++++... ....++.+...++.+.|.+..+.+.+.++|++||+||++.+++.++.+.++.+||.
T Consensus        56 ~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~  135 (395)
T 1vef_A           56 VANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVA  135 (395)
T ss_dssp             TCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred             cccCCCCCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEE
Confidence            46789999999999999998753 22335667788999999999865567999999999999999998876666667776


Q ss_pred             ec
Q psy6206          81 QD   82 (83)
Q Consensus        81 ~~   82 (83)
                      ++
T Consensus       136 ~~  137 (395)
T 1vef_A          136 AM  137 (395)
T ss_dssp             ET
T ss_pred             Ec
Confidence            54

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.07  E-value=1.9e-09  Score=70.79  Aligned_cols=79  Identities=28%  Similarity=0.301  Sum_probs=62.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----CCC
Q psy6206           3 LPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT-----NND   76 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~-----~r~   76 (83)
                      +++||.+|++.+++.++++.. +....++.+...++.+.|.+..+. .+.++|+++|+||++.+++++|.+.     |+.
T Consensus        40 ~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~-~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~  118 (375)
T 2eh6_A           40 NSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWT-EGKVFFANSGTESVEAAIKLARKYWRDKGKNKW  118 (375)
T ss_dssp             CTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSS-CEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             cccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCC-CCeEEEeCchHHHHHHHHHHHHHHhccCCCCCC
Confidence            578999999999999999875 222345666678899999998743 2789999999999999999877654     656


Q ss_pred             ceEEec
Q psy6206          77 DVITQD   82 (83)
Q Consensus        77 ~ii~~~   82 (83)
                      +||..+
T Consensus       119 ~vl~~~  124 (375)
T 2eh6_A          119 KFISFE  124 (375)
T ss_dssp             EEEEEB
T ss_pred             EEEEEC
Confidence            787654

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=98.55  E-value=4.7e-07  Score=60.60  Aligned_cols=75  Identities=15%  Similarity=-0.052  Sum_probs=54.1

Q ss_pred             CCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           5 VGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ..+.+|+|++++.++++.. +.+.....+....+++.+.+..+  .+.++|+|+++|+||++.|++....  ...+||+.
T Consensus        72 ~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~--~gd~Vi~~  149 (421)
T 3l8a_A           72 DFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSE--KGDAVLIN  149 (421)
T ss_dssp             CSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC--TEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcC--CCCEEEEC
Confidence            3457899999999999874 22223335566778888877654  3456899999999999999998633  22356654

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=98.51  E-value=7.7e-07  Score=57.63  Aligned_cols=76  Identities=20%  Similarity=0.175  Sum_probs=57.2

Q ss_pred             cCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           3 LPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ...|+.+|++.+++.++++.. .......+...++++.+.+..+.+.++++|+++|+||++.+++..+. .| .+|+..
T Consensus        21 ~~~~~~~~~v~~a~~~~~~~~-~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~-~g-d~vl~~   96 (359)
T 1svv_A           21 DYSVGMHPKILDLMARDNMTQ-HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR-PW-EAVIAT   96 (359)
T ss_dssp             SCSSCCCHHHHHHHHHHTTCC-CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC-TT-EEEEEE
T ss_pred             CCcCCCCHHHHHHHHHHHhhc-cccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhC-CC-CEEEEc
Confidence            456788999999999988642 12233456778899999888766567899999999999999998753 22 356554

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=98.33  E-value=1.4e-06  Score=56.99  Aligned_cols=79  Identities=13%  Similarity=0.087  Sum_probs=57.6

Q ss_pred             cCCCCCCHHHHHHHHHHHHhhc-cC-C---CCcc--hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206           3 LPVGHCHPAVVKAACTQLALLN-TN-N---RFLH--DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN   75 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~~-~~-~---~~~~--~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r   75 (83)
                      ...|+.+|++.+++.++++... .. .   .++.  +...++.+.|.+.++.+.+.++|+++|++|++.+++..+ +...
T Consensus        23 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~-~~~g  101 (390)
T 1elu_A           23 GGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD-WHQG  101 (390)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-CCTT
T ss_pred             CccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC-CCCC
Confidence            3468889999999999987652 11 1   2222  456789999999887555689999999999999999875 2333


Q ss_pred             CceEEec
Q psy6206          76 DDVITQD   82 (83)
Q Consensus        76 ~~ii~~~   82 (83)
                      .+|+...
T Consensus       102 d~vl~~~  108 (390)
T 1elu_A          102 DEILLTD  108 (390)
T ss_dssp             CEEEEET
T ss_pred             CEEEEec
Confidence            4666543

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=98.31  E-value=6.9e-06  Score=53.92  Aligned_cols=79  Identities=10%  Similarity=0.064  Sum_probs=57.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcc-CC--C-----CcchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHh--h
Q psy6206           4 PVGHCHPAVVKAACTQLALLNT-NN--R-----FLHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARV--H   72 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~~-~~--~-----~~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~--~   72 (83)
                      ..|+.+|++.+++.++++.... ..  .     .+.+...++.+.|.+.++. +.+.++|+++|++|++.+++..+.  .
T Consensus        31 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~  110 (406)
T 1kmj_A           31 ASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNV  110 (406)
T ss_dssp             TCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHC
T ss_pred             ccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcC
Confidence            3467889999999999987521 11  1     1245567899999999875 457899999999999999998763  3


Q ss_pred             cCCCceEEec
Q psy6206          73 TNNDDVITQD   82 (83)
Q Consensus        73 ~~r~~ii~~~   82 (83)
                      ....+|+...
T Consensus       111 ~~gd~vl~~~  120 (406)
T 1kmj_A          111 RAGDNIIISQ  120 (406)
T ss_dssp             CTTCEEEEET
T ss_pred             CCCCEEEEec
Confidence            3344676643

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=98.28  E-value=1.5e-06  Score=57.16  Aligned_cols=75  Identities=13%  Similarity=0.213  Sum_probs=53.2

Q ss_pred             cCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           3 LPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      +.+|+++|.+.+.+.+++.+. ......+.+...++.+.|.+.++.  ++++|++||++|++.|++.++.-.|. +||+
T Consensus         5 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~sGt~al~~al~~~~~~~gd-~Vi~   80 (367)
T 3nyt_A            5 IDLKNQQARIKDKIDAGIQRVLRHGQYILGPEVTELEDRLADFVGA--KYCISCANGTDALQIVQMALGVGPGD-EVIT   80 (367)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTCCTTC-EEEE
T ss_pred             ccccccccccCHHHHHHHHHHHhcCCccCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhCCCCcC-EEEE
Confidence            457788877777766666553 222223456778899999998854  48999999999999999987543343 4554

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=98.27  E-value=5.7e-06  Score=53.99  Aligned_cols=65  Identities=25%  Similarity=0.112  Sum_probs=49.7

Q ss_pred             CCHHHHHHHHHHHHhhc-cCCCCc--chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206           8 CHPAVVKAACTQLALLN-TNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~-~~~~~~--~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      .+|++.+++.++++... ....++  .+...++.+.+.+..+.+.+.++|+++|++|++.+++.++..
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~  109 (397)
T 3f9t_A           42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNI  109 (397)
T ss_dssp             CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHH
Confidence            46899999999887642 112222  344567888899988766779999999999999999988765

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=98.25  E-value=1.1e-05  Score=54.08  Aligned_cols=64  Identities=16%  Similarity=0.137  Sum_probs=49.5

Q ss_pred             CCC-CCCHHHHHHHHHHHHhhcc-CC--C---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           4 PVG-HCHPAVVKAACTQLALLNT-NN--R---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         4 ~lG-h~~p~i~~a~~~~~~~~~~-~~--~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++| |.+|++.+++.++++.... ..  .   ..++...+|.+.|.+..+  .+.+++.+||++|++.+++..
T Consensus        74 ~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g--~~~~i~~~sGs~a~~~al~~l  144 (427)
T 2w8t_A           74 YMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG--TTGAIVFSTGYMANLGIISTL  144 (427)
T ss_dssp             TTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC--CCceEEecCcHHHHHHHHHHh
Confidence            478 7999999999999987421 11  1   134667889999999884  458899999999999998864

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=98.20  E-value=1.1e-05  Score=52.79  Aligned_cols=73  Identities=11%  Similarity=-0.022  Sum_probs=52.6

Q ss_pred             CCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           7 HCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +.+|+|.+++.++++.. +.......+...++++.+.+..+  .+.+.++|+++|+||++.+++....  ...+||+.
T Consensus        45 ~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--~gd~vl~~  120 (391)
T 4dq6_A           45 KAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTK--ANDKIMIQ  120 (391)
T ss_dssp             CCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC--TTCEEEEC
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCC--CCCEEEEc
Confidence            45799999999999764 22223345666788888888765  4467899999999999999997632  22356543

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=98.18  E-value=4.8e-06  Score=54.49  Aligned_cols=70  Identities=17%  Similarity=0.121  Sum_probs=50.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           4 PVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ++| .+|++.+++.++++...   .++.+...++.+.|.+..+.+.+.|+|+++|+|+++.+++..   .| .+|++.
T Consensus        35 ~~~-~~~~v~~a~~~~~~~~~---~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~---~g-d~vl~~  104 (364)
T 1lc5_A           35 PLG-MPVSVKRALIDNLDCIE---RYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL---KP-RRAMIV  104 (364)
T ss_dssp             TTC-CCHHHHHHHHHTGGGGG---SCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH---CC-SEEEEE
T ss_pred             CCC-CCHHHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc---CC-CeEEEe
Confidence            455 67999999999886542   222223456777777776655568999999999999999977   45 567664

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=98.17  E-value=4.3e-06  Score=54.10  Aligned_cols=65  Identities=18%  Similarity=0.253  Sum_probs=48.9

Q ss_pred             cCCCCCCHHHHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           3 LPVGHCHPAVVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      .+.++.+|++.+++.+++.. +. ..+ ..+...++.+.|.+..+ ....++|+++|++|++.+++.++
T Consensus        15 ~~~~~~~~~v~~a~~~~~~~-~~-~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~~   80 (356)
T 1v72_A           15 DNIAGASPEVAQALVKHSSG-QA-GPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAMT   80 (356)
T ss_dssp             GGGCCCCHHHHHHHHHTTSS-CC-CSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTSC
T ss_pred             CCccCCCHHHHHHHHhhccC-cc-cccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHhc
Confidence            34578899999999987632 11 233 34566889999998886 33458999999999999999764

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=98.14  E-value=4.3e-06  Score=54.89  Aligned_cols=75  Identities=16%  Similarity=0.133  Sum_probs=52.5

Q ss_pred             cCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           3 LPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      .++|+++|.+.+.+.+++.+. ......+.+...++.+.|.+.++.  +.++|++||++|++.+++..+.-.|. +||+
T Consensus         6 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~i~~~sgt~al~~~l~~l~~~~gd-~Vi~   81 (373)
T 3frk_A            6 ASFKPMHDEIEYEIKFKFEEIYKRNWFILGDEDKKFEQEFADYCNV--NYCIGCGNGLDALHLILKGYDIGFGD-EVIV   81 (373)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHTS--SEEEEESCHHHHHHHHHHHTTCCTTC-EEEE
T ss_pred             cCCCcccCCCCHHHHHHHHHHHHCCCccCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcCCCCcC-EEEE
Confidence            467888877777766666553 222223456778899999998854  58999999999999999976433333 5554

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=98.14  E-value=1.8e-06  Score=57.35  Aligned_cols=78  Identities=14%  Similarity=0.179  Sum_probs=55.0

Q ss_pred             CCCCCCHHHHHHHHHHHH--hhc-cCC--C-----CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh-h
Q psy6206           4 PVGHCHPAVVKAACTQLA--LLN-TNN--R-----FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV-H   72 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~--~~~-~~~--~-----~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~-~   72 (83)
                      .-|+.+|++.+++.+++.  ... .+.  .     ...+...++.+.|.+.++.+.+.|+|+++|++|++.+++.... +
T Consensus        30 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~  109 (423)
T 3lvm_A           30 ATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFY  109 (423)
T ss_dssp             TCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhh
Confidence            346789999999999887  431 111  1     1124457788888888876566999999999999999996553 4


Q ss_pred             cC-CCceEEe
Q psy6206          73 TN-NDDVITQ   81 (83)
Q Consensus        73 ~~-r~~ii~~   81 (83)
                      .+ ..+|+..
T Consensus       110 ~~~gd~Vl~~  119 (423)
T 3lvm_A          110 QKKGKHIITS  119 (423)
T ss_dssp             TTTCCEEEEE
T ss_pred             ccCCCEEEEC
Confidence            43 4566654

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=98.13  E-value=8.2e-06  Score=53.18  Aligned_cols=78  Identities=15%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhhc-cCCC-C-----cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh--cC
Q psy6206           4 PVGHCHPAVVKAACTQLALLN-TNNR-F-----LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH--TN   74 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~-~~~~-~-----~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~--~~   74 (83)
                      ..|+.+|++.+++.++++... .... .     ..+...++.+.|.+.++.+.+.++|+++|++|++.+++..+..  ..
T Consensus         9 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~   88 (384)
T 1eg5_A            9 ATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKR   88 (384)
T ss_dssp             TCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTT
T ss_pred             ccCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCC
Confidence            456889999999999987641 1111 1     1234577888888887654568999999999999999987641  23


Q ss_pred             CCceEEe
Q psy6206          75 NDDVITQ   81 (83)
Q Consensus        75 r~~ii~~   81 (83)
                      ..+||..
T Consensus        89 gd~vl~~   95 (384)
T 1eg5_A           89 KRTIITT   95 (384)
T ss_dssp             CCEEEEC
T ss_pred             CCEEEEC
Confidence            3456654

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=98.09  E-value=3.1e-05  Score=51.26  Aligned_cols=69  Identities=16%  Similarity=-0.058  Sum_probs=52.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhhc-cCC---C---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206           4 PVGHCHPAVVKAACTQLALLN-TNN---R---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~-~~~---~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      ..|+.+|.+.+++.++++... ...   .   ...+...++.+.|.+.++.+.+.|+|+++|+++++.+++.++.+
T Consensus        36 ~~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~  111 (416)
T 1qz9_A           36 SLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRV  111 (416)
T ss_dssp             TSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHH
T ss_pred             CcCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhccc
Confidence            457888999999999997631 111   0   11355678999999988765678999999999999999987644

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=98.08  E-value=1.2e-05  Score=53.11  Aligned_cols=77  Identities=16%  Similarity=0.146  Sum_probs=55.0

Q ss_pred             CCCCCHHHHHHHHHHHHhhcc--C-C--CCc---chHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHh--hc
Q psy6206           5 VGHCHPAVVKAACTQLALLNT--N-N--RFL---HDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARV--HT   73 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~~--~-~--~~~---~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~--~~   73 (83)
                      .++.+|++.+++.++++....  . +  .+.   ++...++.+.|.+.++. +.+.++|+++|++|++.+++..+.  ..
T Consensus        37 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~  116 (420)
T 1t3i_A           37 TSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLK  116 (420)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCC
T ss_pred             cCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccC
Confidence            356789999999999987421  1 1  121   24457888999998865 457899999999999999998742  33


Q ss_pred             CCCceEEe
Q psy6206          74 NNDDVITQ   81 (83)
Q Consensus        74 ~r~~ii~~   81 (83)
                      ...+|+..
T Consensus       117 ~gd~Vl~~  124 (420)
T 1t3i_A          117 AGDEIITT  124 (420)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEC
Confidence            33466654

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=98.04  E-value=1.6e-05  Score=52.26  Aligned_cols=69  Identities=16%  Similarity=0.130  Sum_probs=49.1

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcch-HHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHD-NLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|.+.+++.++++..   ..++.. ...++.+.|.+.++.+.+.++|+++|++|++.+++...  ....+|+..
T Consensus        39 ~~~~v~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~--~~gd~Vl~~  108 (381)
T 1v2d_A           39 PPPFLLEAVRRALGRQ---DQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV--GPGDEVVVL  108 (381)
T ss_dssp             CCHHHHHHHHHHTTTS---CSCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHh---cCCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC--CCCCEEEEc
Confidence            5789999999988652   223222 24577778887776555689999999999999999763  333456654

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=98.03  E-value=4.6e-05  Score=49.90  Aligned_cols=74  Identities=12%  Similarity=0.057  Sum_probs=51.5

Q ss_pred             CCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           6 GHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+.+|++.+++.++++.. +.......+....+++.+.+..+  .+.+.|+|+++|++|++.+++...  ....+|++.
T Consensus        39 ~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~--~~gd~vl~~  115 (391)
T 3dzz_A           39 FKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT--SPGDQILVQ  115 (391)
T ss_dssp             SCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS--CTTCEEEEC
T ss_pred             CCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC--CCCCeEEEC
Confidence            347899999999998764 22222234555778888877643  345699999999999999999762  223456653

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=98.01  E-value=5.7e-06  Score=54.11  Aligned_cols=75  Identities=17%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             cCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           3 LPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +++|+++|.+.. +.+++.+. ......+.+...++.+.|.+.++.  +.++|++||++|++.+++..+.-.| .+|+..
T Consensus         9 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~a~~~~~~~~~~~~g-d~v~~~   84 (374)
T 3uwc_A            9 SYLERQFADIEP-YLNDLREFIKTADFTLGAELEKFEKRFAALHNA--PHAIGVGTGTDALAMSFKMLNIGAG-DEVITC   84 (374)
T ss_dssp             CCHHHHTSSCHH-HHHHHHHHHHHTCCSSCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTTCCTT-CEEEEE
T ss_pred             eccccCCCCchH-HHHHHHHHHHcCCcccChhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCCCCC-CEEEEC
Confidence            456777766555 55555443 212223456778999999999854  4899999999999999997643333 355543

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=98.01  E-value=3.9e-05  Score=50.30  Aligned_cols=74  Identities=14%  Similarity=0.068  Sum_probs=47.5

Q ss_pred             CCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhh------CCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           5 VGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASL------LPDPLSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~------~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      +| .+|++.+++.+++++. .....++.+...++.+.+.+.      .+.+.+.|+|+++|+++++.+++.... .| .+
T Consensus        42 ~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~-~g-d~  118 (369)
T 3cq5_A           42 YP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGG-PG-RT  118 (369)
T ss_dssp             SC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCS-TT-CE
T ss_pred             CC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcC-CC-CE
Confidence            44 5799999999998763 111223322223555555555      444456899999999999999987532 22 45


Q ss_pred             eEEe
Q psy6206          78 VITQ   81 (83)
Q Consensus        78 ii~~   81 (83)
                      |+..
T Consensus       119 Vl~~  122 (369)
T 3cq5_A          119 ALGF  122 (369)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6654

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=97.98  E-value=3.3e-05  Score=50.47  Aligned_cols=74  Identities=8%  Similarity=-0.142  Sum_probs=49.5

Q ss_pred             CCHHHHHHHHHHHHhhc-cCC-CCcchHHHHHHHHHHhhCCC--CCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALLN-TNN-RFLHDNLVLCARKLASLLPD--PLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~-~~~-~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|.+.+++.+++.... ... ....+....+++.+.+..+.  +.+.++|+++|+||++.+++....-++..+|+..
T Consensus        37 ~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~  114 (376)
T 3ezs_A           37 TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYP  114 (376)
T ss_dssp             CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEE
T ss_pred             CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEe
Confidence            47899999998875442 211 12234556677777655442  4579999999999999999976543323466654

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=97.96  E-value=1.4e-05  Score=51.85  Aligned_cols=59  Identities=14%  Similarity=0.050  Sum_probs=45.3

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+|++.+++.++++...   .++++...++.+.|.+..+.+.+.++|+++|++|++.+++..
T Consensus        40 ~~~~v~~a~~~~~~~~~---~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~   98 (361)
T 3ftb_A           40 IPKSFLNNIDEGIKNLG---VYPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF   98 (361)
T ss_dssp             SCHHHHTTHHHHHHGGG---SCCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhc---CCCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc
Confidence            47999999999988752   223334467777777777655679999999999999999865

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=97.96  E-value=2.7e-05  Score=50.75  Aligned_cols=67  Identities=15%  Similarity=0.120  Sum_probs=50.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhhc-cC-CCCc-----chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           4 PVGHCHPAVVKAACTQLALLN-TN-NRFL-----HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~-~~-~~~~-----~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      ..|+.+|+|.+++.++++... .. ..+.     .+...++.+.+.+.++.+.+.++|+++|++|++.+++...
T Consensus         8 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~   81 (382)
T 4eb5_A            8 SAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYA   81 (382)
T ss_dssp             TCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHH
Confidence            346789999999999987642 11 1122     2345778888888876545689999999999999999776

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=97.91  E-value=0.00012  Score=48.27  Aligned_cols=65  Identities=23%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             cCCCC-CCHHHHHHHHHHHHhhccC---CCCc---chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           3 LPVGH-CHPAVVKAACTQLALLNTN---NRFL---HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         3 ~~lGh-~~p~i~~a~~~~~~~~~~~---~~~~---~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .++|| .+|++.+++.++++.....   ..++   .+...++.+.|.+.++.  +..++.+||++|++.+++..
T Consensus        54 ~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~~~i~~~sGs~a~~~~~~~~  125 (401)
T 1fc4_A           54 NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM--EDAILYSSCFDANGGLFETL  125 (401)
T ss_dssp             CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHTTHHHH
T ss_pred             CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCC--CcEEEeCChHHHHHHHHHHH
Confidence            46886 8999999999998774211   1121   46678899999998854  36778899999999988864

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=97.91  E-value=0.00016  Score=47.37  Aligned_cols=63  Identities=19%  Similarity=0.196  Sum_probs=48.6

Q ss_pred             CC-CCCHHHHHHHHHHHHhhcc---CCCC---cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           5 VG-HCHPAVVKAACTQLALLNT---NNRF---LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         5 lG-h~~p~i~~a~~~~~~~~~~---~~~~---~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +| +.+|++.+++.++++....   .+.+   .++...++.+.|.+.++  .+.+++.+||++|++.+++..
T Consensus        50 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--~~~~i~~~sGt~a~~~~~~~~  119 (384)
T 1bs0_A           50 LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG--YSRALLFISGFAANQAVIAAM  119 (384)
T ss_dssp             TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC--CCcEEEeCCcHHHHHHHHHHh
Confidence            68 6899999999999977421   1122   34677889999999884  357899999999999999864

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=97.90  E-value=0.00013  Score=47.88  Aligned_cols=65  Identities=20%  Similarity=0.178  Sum_probs=48.9

Q ss_pred             cCCC-CCCHHHHHHHHHHHHhhcc---CCCC---cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           3 LPVG-HCHPAVVKAACTQLALLNT---NNRF---LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         3 ~~lG-h~~p~i~~a~~~~~~~~~~---~~~~---~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .++| |.+|++.+++.+++++...   ...+   ..+...++.+.+.+..+.  +..++.+||++|++.+++..
T Consensus        52 ~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~--~~~i~~~sGt~a~~~~l~~~  123 (399)
T 3tqx_A           52 NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGT--DDTILYSSCFDANGGLFETL  123 (399)
T ss_dssp             CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHTTHHHH
T ss_pred             CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCC--CcEEEECchHHHHHHHHHHh
Confidence            4578 7999999999999987521   1111   345678899999988853  46777889999999998754

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=97.89  E-value=2.3e-05  Score=52.82  Aligned_cols=63  Identities=10%  Similarity=0.047  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh---cCCC
Q psy6206          10 PAVVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH---TNND   76 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~---~~r~   76 (83)
                      |.|.+++.+++.....  .+ .++...+|.+.|.+.++  .++++|++||+||++.|++.++.+   +|+.
T Consensus        55 ~~v~~a~~~~~~~~~~--~y~~~~~~~~l~~~la~~~~--~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~  121 (467)
T 1ax4_A           55 NAMSDHQWAAMITGDE--AYAGSRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILFPVLLKYKQKEGKA  121 (467)
T ss_dssp             CCEEHHHHHHHHTCCC--CSSSCHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhhccc--ccccCccHHHHHHHHHHHcC--CCcEEEcCCcHHHHHHHHHHHHHhhccCCCc
Confidence            5677777776654321  23 34556788999998885  469999999999999999998875   6765

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=97.89  E-value=6e-05  Score=50.04  Aligned_cols=63  Identities=17%  Similarity=0.170  Sum_probs=45.1

Q ss_pred             CCC-CCHHHHHHHHHHHHhhcc---CC---CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           5 VGH-CHPAVVKAACTQLALLNT---NN---RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         5 lGh-~~p~i~~a~~~~~~~~~~---~~---~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|+ .||+|.+++.+++++...   ..   ....+...++++.|.+..+  .+.+++.+||++|++.+++..
T Consensus        70 l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--~~~~i~~~sGt~a~~~~l~~~  139 (409)
T 3kki_A           70 LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG--FDECLLSQSGWNANVGLLQTI  139 (409)
T ss_dssp             TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHH
T ss_pred             cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC--CCeEEEecchHHHHHHHHHHh
Confidence            555 589999999999987411   01   1122445678888888874  456788899999999999854

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=97.88  E-value=8.1e-05  Score=48.23  Aligned_cols=59  Identities=19%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+|++.+++.++++..   ..++.+...++.+.+.+..+.+.+.++|+++|++|++.+++..
T Consensus        30 ~~~~v~~a~~~~~~~~---~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l   88 (354)
T 3ly1_A           30 MSPKAQAAARDAVVKA---NRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAY   88 (354)
T ss_dssp             CCHHHHHHHHHTGGGT---TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhC---cCCCCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHH
Confidence            5799999999887753   3455566688999999988755679999999999999999965

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=97.88  E-value=6.3e-05  Score=49.46  Aligned_cols=75  Identities=19%  Similarity=0.048  Sum_probs=46.9

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCCC------CCCeEEe--eCChHHHHHHHHHHHHhhcCCCc
Q psy6206           7 HCHPAVVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLPD------PLSVCFF--VNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~------~~~~v~f--~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      +.+|.+.+++.++++.... ..+ +.....++.+.+.+....      +.++|+|  +++|++|++.++++.+.+....+
T Consensus        44 ~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~  122 (396)
T 2q7w_A           44 PVLTSVKKAEQYLLENETT-KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKR  122 (396)
T ss_dssp             CCCHHHHHHHHHHHHHCCC-CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCcHHHHHHHHhhcCcccc-cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCE
Confidence            3459999999988765311 112 222223444444444311      1458888  99999999999998776554456


Q ss_pred             eEEec
Q psy6206          78 VITQD   82 (83)
Q Consensus        78 ii~~~   82 (83)
                      |+..+
T Consensus       123 Vl~~~  127 (396)
T 2q7w_A          123 VWVSN  127 (396)
T ss_dssp             EEEEE
T ss_pred             EEEcC
Confidence            76643

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=97.87  E-value=2.1e-05  Score=52.13  Aligned_cols=73  Identities=14%  Similarity=-0.030  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCCC------CCCeEEe--eCChHHHHHHHHHHHHhhcCC-----
Q psy6206          10 PAVVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLPD------PLSVCFF--VNSGSEANDLALRLARVHTNN-----   75 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~------~~~~v~f--~~sGseA~e~Alk~ar~~~~r-----   75 (83)
                      |.+.+++.++++.......+ +.....++.+.+.+..+.      ..++|+|  +++|++|++.++++.+.+...     
T Consensus        51 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~  130 (412)
T 1ajs_A           51 PVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKD  130 (412)
T ss_dssp             HHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCC
T ss_pred             HHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCC
Confidence            78999998877321011122 222224455555554421      2468999  999999999999987765433     


Q ss_pred             CceEEec
Q psy6206          76 DDVITQD   82 (83)
Q Consensus        76 ~~ii~~~   82 (83)
                      .+|+...
T Consensus       131 d~Vl~~~  137 (412)
T 1ajs_A          131 TPVYVSS  137 (412)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEcC
Confidence            5677653

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=97.87  E-value=4.1e-05  Score=49.81  Aligned_cols=74  Identities=12%  Similarity=-0.005  Sum_probs=49.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhhc--------cCCCCcchHHHHHHHH-HHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcC
Q psy6206           4 PVGHCHPAVVKAACTQLALLN--------TNNRFLHDNLVLCARK-LASLLPDPLSVCFFVNSGSEANDLALRLARVHTN   74 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~--------~~~~~~~~~~~~la~~-l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~   74 (83)
                      +.|+.+|++.+++.++++...        .....+.+...++.+. +.+.++.+  .++|+++|++|++.+++...  ..
T Consensus        17 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~~~~~~~--~~   92 (371)
T 2e7j_A           17 TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSLA--KK   92 (371)
T ss_dssp             HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHHC--CT
T ss_pred             cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHHHHHHHHh--CC
Confidence            356778999999999886541        1112234556788899 99988654  99999999999999999773  23


Q ss_pred             CCceEEe
Q psy6206          75 NDDVITQ   81 (83)
Q Consensus        75 r~~ii~~   81 (83)
                      ..+|+..
T Consensus        93 gd~vl~~   99 (371)
T 2e7j_A           93 DAWVVMD   99 (371)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEc
Confidence            3456654

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=97.87  E-value=1e-05  Score=53.40  Aligned_cols=74  Identities=16%  Similarity=0.097  Sum_probs=47.6

Q ss_pred             cCCCCCCHH----HHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206           3 LPVGHCHPA----VVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDV   78 (83)
Q Consensus         3 ~~lGh~~p~----i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~i   78 (83)
                      .++++++|.    +.+++.+.+.....  ..+.+...++.+.|.+.++.  +.++|++||++|++.+++..+.-.| .+|
T Consensus        25 ~~l~~~~p~~~~~~~~a~~~~~~~~~~--~~~~~~~~~l~~~la~~~~~--~~~i~~~~gt~al~~~l~~~~~~~g-d~v   99 (391)
T 3dr4_A           25 PRISVAAPRLDGNERDYVLECMDTTWI--SSVGRFIVEFEKAFADYCGV--KHAIACNNGTTALHLALVAMGIGPG-DEV   99 (391)
T ss_dssp             ---CCCCCCCCSSHHHHHHHHHHHTCC--SSCSHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHTCCTT-CEE
T ss_pred             ceeccCCCCCCHHHHHHHHHHHHcCCc--cCCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCCCCc-CEE
Confidence            456777654    45555555443211  12456778899999998854  4899999999999999997743333 355


Q ss_pred             EEe
Q psy6206          79 ITQ   81 (83)
Q Consensus        79 i~~   81 (83)
                      +..
T Consensus       100 l~~  102 (391)
T 3dr4_A          100 IVP  102 (391)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            543

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=97.87  E-value=4.1e-05  Score=49.95  Aligned_cols=72  Identities=15%  Similarity=0.036  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|+|.+++.++++.. .....++.+...++.+.|.+..+.+.+.++|+++|++|++.+++.... .| .+|+..
T Consensus        40 ~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~-~g-d~Vl~~  112 (360)
T 3hdo_A           40 PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAA-EG-EEIGYV  112 (360)
T ss_dssp             CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCC-TT-CEEEEE
T ss_pred             CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhC-CC-CEEEEc
Confidence            4799999999998763 111223322235677777776654457999999999999999986522 23 355543

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=97.85  E-value=0.00024  Score=46.42  Aligned_cols=75  Identities=12%  Similarity=-0.041  Sum_probs=48.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhh-ccCC--CCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206           4 PVGHCHPAVVKAACTQLALL-NTNN--RFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLARVHTNNDDV   78 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~-~~~~--~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~i   78 (83)
                      .+|+ +|.+.+++.++++.. ..+.  ....+....+++.+....  +.+.+.++++++|++|++.+++.... .| .+|
T Consensus        40 ~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~-~g-d~v  116 (370)
T 2z61_A           40 DFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIID-DG-DEV  116 (370)
T ss_dssp             SSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCC-TT-CEE
T ss_pred             CCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcC-CC-CEE
Confidence            4566 789999999998763 1111  112344556666665432  23356899999999999999997621 23 456


Q ss_pred             EEe
Q psy6206          79 ITQ   81 (83)
Q Consensus        79 i~~   81 (83)
                      +..
T Consensus       117 l~~  119 (370)
T 2z61_A          117 LIQ  119 (370)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=97.85  E-value=1.9e-05  Score=51.91  Aligned_cols=73  Identities=14%  Similarity=0.080  Sum_probs=50.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCC-eEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLS-VCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~-~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      -++.+|++.+++.+++.. +. +....+...++++.+.+..+.+.+ .++|+++|++|++.+++...  ....+|+..
T Consensus        42 ~~~~~~~v~~a~~~~~~~-~~-~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~--~~gd~Vl~~  115 (393)
T 1vjo_A           42 PSNAHPSVLQAMNVSPVG-HL-DPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--EPGDVVLIG  115 (393)
T ss_dssp             CCCCCHHHHHHHSSCCCC-TT-SHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             CCCCCHHHHHHHhccccc-cc-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc--CCCCEEEEE
Confidence            456789999888776543 11 111234567788888888765556 89999999999999999773  233456654

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=97.83  E-value=9.5e-05  Score=49.47  Aligned_cols=74  Identities=15%  Similarity=0.016  Sum_probs=51.2

Q ss_pred             cCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           3 LPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ..++|.+|+.++++.+ ....+..+...++...++.+.+.+..+.  +.++|++||+||++.+++..  .....+||+.
T Consensus        28 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~--~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~  101 (412)
T 2cb1_A           28 AAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEGA--LEAVVLASGQAATFAALLAL--LRPGDEVVAA  101 (412)
T ss_dssp             SBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTT--CCTTCEEEEE
T ss_pred             ceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEe
Confidence            4678888887665544 1112333344557778899999998854  48999999999999999965  2333466654

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=97.82  E-value=0.00015  Score=47.78  Aligned_cols=63  Identities=21%  Similarity=0.154  Sum_probs=48.9

Q ss_pred             CCC-CCHHHHHHHHHHHHhhcc-CC-----CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           5 VGH-CHPAVVKAACTQLALLNT-NN-----RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         5 lGh-~~p~i~~a~~~~~~~~~~-~~-----~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|| .+|++.+++.++++.... ..     ....+...++++.+.+..+  .+.++++++|+||++.+++..
T Consensus        54 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--~~~v~~~~ggt~a~~~~~~~~  123 (398)
T 3a2b_A           54 LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG--KEAAILFSTGFQSNLGPLSCL  123 (398)
T ss_dssp             TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHS
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHH
Confidence            588 789999999999876421 11     1134667889999988875  358999999999999999875

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=97.82  E-value=0.00013  Score=48.04  Aligned_cols=76  Identities=11%  Similarity=-0.042  Sum_probs=53.3

Q ss_pred             CCCCHHHHHHHHHHHHhhc-c-CCCCc-----chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH-HhhcCCCc
Q psy6206           6 GHCHPAVVKAACTQLALLN-T-NNRFL-----HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA-RVHTNNDD   77 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~-~-~~~~~-----~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a-r~~~~r~~   77 (83)
                      ++.+|++.+++.++++... . .+.+.     .+...++.+.+.+.++.+.+.++|+++|+++++.+++.. +.+....+
T Consensus        36 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~  115 (406)
T 3cai_A           36 MLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYE  115 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCE
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCE
Confidence            3668999999999998642 1 12232     345677888888887654568999999999999998843 33443446


Q ss_pred             eEEe
Q psy6206          78 VITQ   81 (83)
Q Consensus        78 ii~~   81 (83)
                      ||+.
T Consensus       116 vi~~  119 (406)
T 3cai_A          116 VIVS  119 (406)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6654

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=97.81  E-value=3e-05  Score=50.50  Aligned_cols=69  Identities=9%  Similarity=0.028  Sum_probs=46.3

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|++.+++.++++..   ..++.+...++.+.+.+..+.+.+.++|+++|+||++.+++..  .....+|+..
T Consensus        46 ~~~~v~~a~~~~~~~~---~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~--~~~gd~vl~~  114 (363)
T 3ffh_A           46 TSKKVAAIQANSSVET---EIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL--LDTTTNTVMA  114 (363)
T ss_dssp             CCHHHHHHHHTCBSCC---CBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH--CSTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHh---hcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH--ccCCCEEEEc
Confidence            4688999988866543   2334444467777887777655679999999999999999865  2223355543

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=97.81  E-value=9e-05  Score=48.28  Aligned_cols=59  Identities=8%  Similarity=0.077  Sum_probs=43.4

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+|++.+++.++++...   .++.+...++.+.|.+..+.+.+.++|+++|++|++.+++..
T Consensus        44 ~~~~v~~a~~~~~~~~~---~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l  102 (365)
T 3get_A           44 TPPKAIECLRQNANKAH---LYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK  102 (365)
T ss_dssp             SCHHHHHHHHHHGGGTT---SCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhc---cCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH
Confidence            47899999999887542   222222246777777776545679999999999999999865

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=97.81  E-value=0.00017  Score=48.03  Aligned_cols=75  Identities=12%  Similarity=-0.046  Sum_probs=48.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhh----ccCCC--CcchHHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHHHHHhhcC
Q psy6206           4 PVGHCHPAVVKAACTQLALL----NTNNR--FLHDNLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALRLARVHTN   74 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~----~~~~~--~~~~~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk~ar~~~~   74 (83)
                      .+| .+|.+.+++.++++..    ..+..  ...+....+++.+.+..+  .+.+ .|+|+++|+||++.+++.... .|
T Consensus        48 ~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~-~g  125 (429)
T 1yiz_A           48 DYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVD-EG  125 (429)
T ss_dssp             SSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCC-TT
T ss_pred             CCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcC-CC
Confidence            345 5799999999998762    11111  122344556666654333  3456 899999999999999997632 23


Q ss_pred             CCceEEe
Q psy6206          75 NDDVITQ   81 (83)
Q Consensus        75 r~~ii~~   81 (83)
                       .+|++.
T Consensus       126 -d~Vl~~  131 (429)
T 1yiz_A          126 -DEVIII  131 (429)
T ss_dssp             -CEEEEE
T ss_pred             -CEEEEc
Confidence             456654

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.80  E-value=0.00022  Score=46.89  Aligned_cols=75  Identities=15%  Similarity=0.052  Sum_probs=49.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhh-ccCCCCcch-HHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           4 PVGHCHPAVVKAACTQLALL-NTNNRFLHD-NLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~-~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      .+| .+|+|.+++.++++.. ..+.....+ ....+++.+.+..+  .+.+.|+|+++|+||++.+++.... .| .+|+
T Consensus        39 ~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~-~g-d~vl  115 (390)
T 1d2f_A           39 DFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE-TG-EGVV  115 (390)
T ss_dssp             SSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC-TT-CEEE
T ss_pred             CCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcC-CC-CEEE
Confidence            345 5799999999998653 111111334 55667776665443  3456899999999999999996532 22 4566


Q ss_pred             Ee
Q psy6206          80 TQ   81 (83)
Q Consensus        80 ~~   81 (83)
                      +.
T Consensus       116 ~~  117 (390)
T 1d2f_A          116 IH  117 (390)
T ss_dssp             EE
T ss_pred             Ec
Confidence            54

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=97.80  E-value=3.7e-05  Score=50.56  Aligned_cols=66  Identities=14%  Similarity=0.057  Sum_probs=49.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhc-cCC------CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           5 VGHCHPAVVKAACTQLALLN-TNN------RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~-~~~------~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      .+..+|++.+++.++++... ...      ....+...++.+.|.+..+.+.+.++|+++|++|++.+++...
T Consensus        29 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~  101 (400)
T 3vax_A           29 TTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLA  101 (400)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTH
T ss_pred             CCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHH
Confidence            34568999999999987641 111      1123445778888888887655689999999999999999765

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=97.80  E-value=0.00019  Score=47.14  Aligned_cols=74  Identities=14%  Similarity=-0.014  Sum_probs=50.2

Q ss_pred             CCHHHHHHHHHHHHhhc-cCC-CCcchHHHHHHHHHHhhCC---CCCC-eEEeeCChHHHHHHHHHHHHhhcC---CCce
Q psy6206           8 CHPAVVKAACTQLALLN-TNN-RFLHDNLVLCARKLASLLP---DPLS-VCFFVNSGSEANDLALRLARVHTN---NDDV   78 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~-~~~-~~~~~~~~~la~~l~~~~p---~~~~-~v~f~~sGseA~e~Alk~ar~~~~---r~~i   78 (83)
                      .+|.+.+++.++++... ... ....+....+++.+.+..+   .+.+ .++|+++|++|++.+++......+   +.+|
T Consensus        44 ~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~v  123 (396)
T 3jtx_A           44 TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAI  123 (396)
T ss_dssp             CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEE
T ss_pred             CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEE
Confidence            47899999999886542 222 1234556777777776543   2356 899999999999999997754322   2467


Q ss_pred             EEe
Q psy6206          79 ITQ   81 (83)
Q Consensus        79 i~~   81 (83)
                      ++.
T Consensus       124 l~~  126 (396)
T 3jtx_A          124 VSP  126 (396)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            654

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=97.79  E-value=9.4e-05  Score=48.13  Aligned_cols=70  Identities=17%  Similarity=0.070  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh-hcCCCceEEe
Q psy6206           7 HCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV-HTNNDDVITQ   81 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~-~~~r~~ii~~   81 (83)
                      .-+|++.+++.++++...   ..+.+...++.+.|.+.++.  +.++|++||++|++.+++..+. .....+|+..
T Consensus        10 ~~~~~v~~a~~~~~~~~~---~~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~   80 (375)
T 2fnu_A           10 CLDKEDKKAVLEVLNSKQ---LTQGKRSLLFEEALCEFLGV--KHALVFNSATSALLTLYRNFSEFSADRNEIITT   80 (375)
T ss_dssp             CCCHHHHHHHHHHHTSSC---CSSSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEEC
T ss_pred             CCCHHHHHHHHHHHHcCc---ccCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEEC
Confidence            357999999999886532   12345677889999988854  4899999999999999998752 2222356654

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=97.78  E-value=0.00012  Score=47.78  Aligned_cols=61  Identities=16%  Similarity=0.097  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+|++.+++.++++... ...++.+...++.+.|.+..+. +.+.++|+++|+||++.+++..
T Consensus        44 ~~~~v~~a~~~~~~~~~-~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~  105 (367)
T 3euc_A           44 LPPALRSELAARLGEVA-LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA  105 (367)
T ss_dssp             CCHHHHHHHHHHHHHHH-TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhhhhh-hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH
Confidence            57999999999987531 1233333456777778777654 4579999999999999999865

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=97.77  E-value=1.2e-05  Score=54.15  Aligned_cols=59  Identities=8%  Similarity=0.084  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206          10 PAVVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      |+|.+++.++++...  ..+ .++...+|.+.|++.++  .++++|++||+||++.|++.++..
T Consensus        53 ~~v~~a~~~~l~~~~--~~y~~~~~~~~l~~~la~~~~--~~~v~~t~~gt~A~~~al~~~~~~  112 (467)
T 2oqx_A           53 GAVTQSMQAAMMRGD--EAYSGSRSYYALAESVKNIFG--YQYTIPTHQGRGAEQIYIPVLIKK  112 (467)
T ss_dssp             SCCCHHHHHHTTSCC--CCSSSCHHHHHHHHHHHHHHC--CSEEEEEC--CCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCc--ceeccCchhHHHHHHHHHHhC--cCcEEEcCCcHHHHHHHHHHHhcc
Confidence            778888877765421  123 24556789999999884  479999999999999999998876

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=97.77  E-value=0.00016  Score=47.77  Aligned_cols=74  Identities=18%  Similarity=-0.055  Sum_probs=48.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhc-cCCCCc-----chHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHHHhhcCCC
Q psy6206           5 VGHCHPAVVKAACTQLALLN-TNNRFL-----HDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLARVHTNND   76 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~-~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ar~~~~r~   76 (83)
                      .||.+|.+.+++.++++... ... +.     .+....+++.+.+..+  .+.+.|+|+++|++|++.+++.... .| .
T Consensus        47 ~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~-~g-d  123 (407)
T 2zc0_A           47 ELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLID-PG-D  123 (407)
T ss_dssp             TTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCC-TT-C
T ss_pred             hhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcC-CC-C
Confidence            46778999999999987642 111 22     2334455555544333  3456899999999999999998742 23 3


Q ss_pred             ceEEe
Q psy6206          77 DVITQ   81 (83)
Q Consensus        77 ~ii~~   81 (83)
                      +|+..
T Consensus       124 ~vl~~  128 (407)
T 2zc0_A          124 VVITE  128 (407)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            56654

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=97.76  E-value=5.1e-05  Score=49.95  Aligned_cols=74  Identities=18%  Similarity=-0.037  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHHHHHhh--ccC-C-CCcchHHHHHHHHHHhhCCCCCCeEEe--eCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           7 HCHPAVVKAACTQLALL--NTN-N-RFLHDNLVLCARKLASLLPDPLSVCFF--VNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~--~~~-~-~~~~~~~~~la~~l~~~~p~~~~~v~f--~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      +.+|.+.+++.++++..  +.+ . ....+....+++.+..... ..++|+|  +++|++|++.++++.+.+....+|+.
T Consensus        44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~-~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~  122 (394)
T 2ay1_A           44 PIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGL-KSETTATLATVGGTGALRQALELARMANPDLRVFV  122 (394)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGC-CGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             cCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCC-CcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEE
Confidence            44699999999887652  111 1 1112333445544432211 3468999  99999999999998876544445665


Q ss_pred             e
Q psy6206          81 Q   81 (83)
Q Consensus        81 ~   81 (83)
                      .
T Consensus       123 ~  123 (394)
T 2ay1_A          123 S  123 (394)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=97.76  E-value=4.5e-05  Score=50.38  Aligned_cols=75  Identities=11%  Similarity=0.003  Sum_probs=48.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhc-cCCCCcc-hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           5 VGHCHPAVVKAACTQLALLN-TNNRFLH-DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~-~~~~~~~-~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .||.+|.+.+++.++++... ....+.. ....++.+.+.+..+.+.+.|+++++|++|++.+++.... .| .+|+..
T Consensus        45 ~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~-~g-d~Vl~~  121 (397)
T 2zyj_A           45 ELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLD-EG-SPVLLE  121 (397)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC-TT-CEEEEE
T ss_pred             hhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCC-CC-CEEEEe
Confidence            46778999999999887631 1122222 1234566666665543346899999999999999997532 23 356654

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=97.73  E-value=0.00033  Score=46.10  Aligned_cols=72  Identities=11%  Similarity=-0.097  Sum_probs=46.0

Q ss_pred             CCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|.+.+++.++++.. ..+.....+....+++.+.+..+  .+.+.|+|+++|+||++.+++...  ....+|++.
T Consensus        45 ~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~--~~gd~vl~~  119 (399)
T 1c7n_A           45 NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT--KPGDGVIII  119 (399)
T ss_dssp             CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--CTTCEEEEC
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc--CCCCEEEEc
Confidence            4789999999998753 11111123444556665554333  345689999999999999998653  222456654

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=97.69  E-value=5e-05  Score=49.81  Aligned_cols=74  Identities=8%  Similarity=-0.035  Sum_probs=50.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           4 PVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ..++.+|.+.+++.++++. +. .....+...++.+.+.+.++.+.+.++|+++|++|++.+++..  .....+|+..
T Consensus        16 ~~~~~~~~v~~a~~~~~~~-~~-~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~--~~~gd~Vl~~   89 (392)
T 2z9v_A           16 GPVNAYPEVLRGLGRTVLY-DY-DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL--ISPDDVVLNL   89 (392)
T ss_dssp             SCCCCCHHHHHHTTSCCCC-TT-SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH--CCTTCCEEEE
T ss_pred             CCcCCCHHHHHHHhccccc-cc-cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh--cCCCCEEEEe
Confidence            3456789999988776543 11 1111234567888888888655578999999999999999976  3333456654

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=97.67  E-value=9.8e-05  Score=47.92  Aligned_cols=60  Identities=12%  Similarity=-0.013  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      .+|++.+++.+++....   .++.+...++.+.|.+..+.+.+.++|+++|++|++.+++...
T Consensus        29 ~~~~v~~a~~~~~~~~~---~y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~   88 (350)
T 3fkd_A           29 DKDHLEKHLVENLNCIR---HYPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR   88 (350)
T ss_dssp             CCHHHHHHHHHTGGGGG---SCCCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhHhHHh---cCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC
Confidence            57899999988774432   2222222567778887776556799999999999999999765

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=97.67  E-value=0.00033  Score=46.16  Aligned_cols=62  Identities=19%  Similarity=0.132  Sum_probs=47.7

Q ss_pred             CCCCC--CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           4 PVGHC--HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         4 ~lGh~--~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      ++|..  +|++.+++.++++...   ..+.+...++.+.|.+.++.  +.++|++||++|++.+++..+
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~a~~~al~~~~   70 (390)
T 3b8x_A            7 PLASSTWDDLEYKAIQSVLDSKM---FTMGEYVKQYETQFAKTFGS--KYAVMVSSGSTANLLMIAALF   70 (390)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTC---CSSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTT
T ss_pred             cCCCCCCCHHHHHHHHHHHHcCC---CCCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHH
Confidence            44443  5889999999887642   22356678888999988854  478999999999999999874

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=97.66  E-value=0.00048  Score=44.83  Aligned_cols=73  Identities=14%  Similarity=-0.069  Sum_probs=48.8

Q ss_pred             CCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           7 HCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ..+|++.+++.++++.. ........+....+++.+.+..+  .+.+.++|+++|++|++.+++.... .| .+|+..
T Consensus        36 ~~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~-~g-d~vl~~  111 (377)
T 3fdb_A           36 STCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTP-AQ-SKVIVP  111 (377)
T ss_dssp             CCCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC-TT-CCEEEE
T ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcC-CC-CEEEEc
Confidence            46899999999999873 22111224555667777765432  3456899999999999999987532 23 345543

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=97.66  E-value=0.00085  Score=43.38  Aligned_cols=66  Identities=15%  Similarity=0.116  Sum_probs=48.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhcc-C-CCC-----cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           5 VGHCHPAVVKAACTQLALLNT-N-NRF-----LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~~-~-~~~-----~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      .+..+|.+.+++.+++..... + ..+     ..+...++.+.+.+..+.+.+.++|+++|++|++.+++...
T Consensus         9 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~   81 (382)
T 4hvk_A            9 AKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYA   81 (382)
T ss_dssp             CCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhh
Confidence            456689999999999977521 1 111     12345678888888886655689999999999999999654

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=97.65  E-value=0.00022  Score=48.66  Aligned_cols=76  Identities=12%  Similarity=0.041  Sum_probs=48.9

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCC-----CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh---c---
Q psy6206           5 VGHCHPAVVKAACTQLALLNTNNR-----FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH---T---   73 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~~~~~-----~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~---~---   73 (83)
                      .+|.+|++++++.++....+....     ...+...++.+.+.+.++.+. .++++++|++|+..|++++|.+   .   
T Consensus        75 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~  153 (474)
T 1wyu_B           75 TMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHEDRGEG  153 (474)
T ss_dssp             CCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             cccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHhcCCc
Confidence            456779998888776211111000     011345778888888875422 4678899999999999998864   2   


Q ss_pred             -CCCceEEe
Q psy6206          74 -NNDDVITQ   81 (83)
Q Consensus        74 -~r~~ii~~   81 (83)
                       +|++||..
T Consensus       154 ~~r~~Vlv~  162 (474)
T 1wyu_B          154 RTRRVVLVP  162 (474)
T ss_dssp             TTCCEEEEE
T ss_pred             cCCCEEEEe
Confidence             34567764

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=97.65  E-value=0.00011  Score=48.35  Aligned_cols=72  Identities=14%  Similarity=-0.064  Sum_probs=44.4

Q ss_pred             HHHHHHHHH-HHHhhcc--C-C-CCcchHHHHHHHHHHhhCC--CCCC--eEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          10 PAVVKAACT-QLALLNT--N-N-RFLHDNLVLCARKLASLLP--DPLS--VCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        10 p~i~~a~~~-~~~~~~~--~-~-~~~~~~~~~la~~l~~~~p--~~~~--~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |.|.+++.+ .++....  + . ....+....+++.+.....  ...+  .++|+++|++|++.++++........+|+.
T Consensus        47 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~  126 (397)
T 3fsl_A           47 QAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWV  126 (397)
T ss_dssp             HHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEE
Confidence            899999998 7765211  1 1 1112333445555543221  0245  899999999999999987665554446665


Q ss_pred             e
Q psy6206          81 Q   81 (83)
Q Consensus        81 ~   81 (83)
                      .
T Consensus       127 ~  127 (397)
T 3fsl_A          127 S  127 (397)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=97.63  E-value=0.00024  Score=47.65  Aligned_cols=71  Identities=17%  Similarity=0.163  Sum_probs=45.2

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCC-cchHHHHHHHHHHhhCC-----CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           7 HCHPAVVKAACTQLALLNTNNRF-LHDNLVLCARKLASLLP-----DPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~~~~~~~-~~~~~~~la~~l~~~~p-----~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      ..+|.+.+++.++++.... ..+ +.....++.+.+.+...     ...++|+++++|++|++.+++.... .| .+|+.
T Consensus        71 ~~~~~v~~a~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~-~g-d~vl~  147 (427)
T 3dyd_A           71 PTDPEVTQAMKDALDSGKY-NGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLAN-PG-QNILV  147 (427)
T ss_dssp             CCCHHHHHHHHHHHHHCCS-SSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCC-TT-CEEEE
T ss_pred             CCCHHHHHHHHHHHhcCcC-CCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcC-CC-CEEEE
Confidence            4568899999998876321 122 12223345555554443     2356899999999999999997643 23 34554

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=97.61  E-value=0.0006  Score=44.57  Aligned_cols=74  Identities=11%  Similarity=-0.061  Sum_probs=46.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCCCCcc-hHHHHHHHHHHhhC----CCC--CC-eEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206           4 PVGHCHPAVVKAACTQLALLNTNNRFLH-DNLVLCARKLASLL----PDP--LS-VCFFVNSGSEANDLALRLARVHTNN   75 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~----p~~--~~-~v~f~~sGseA~e~Alk~ar~~~~r   75 (83)
                      .+| .+|.+.+++.++++... ...++. ....++.+.+.+.+    +.+  .+ .|+|+++|+||++.+++.... .| 
T Consensus        36 ~~~-~~~~v~~a~~~~~~~~~-~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~-~g-  111 (376)
T 2dou_A           36 DLP-PPEAPLKALAEALNDPT-TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTE-PE-  111 (376)
T ss_dssp             CCC-CCHHHHHHHHHHTTCGG-GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCC-TT-
T ss_pred             CCC-CCHHHHHHHHHHHhCCC-cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcC-CC-
Confidence            345 37999999999886421 123333 23455556555544    432  24 899999999999999986532 22 


Q ss_pred             CceEEe
Q psy6206          76 DDVITQ   81 (83)
Q Consensus        76 ~~ii~~   81 (83)
                      .+|++.
T Consensus       112 d~vl~~  117 (376)
T 2dou_A          112 DLLLLP  117 (376)
T ss_dssp             CEEEEE
T ss_pred             CEEEEC
Confidence            456654

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=97.60  E-value=0.00085  Score=43.99  Aligned_cols=72  Identities=17%  Similarity=0.001  Sum_probs=46.3

Q ss_pred             CCHHHHHHHHHHHHhh-ccCCC--CcchHHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALL-NTNNR--FLHDNLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~-~~~~~--~~~~~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|.+.+++.++++.. ..+..  ...+....+++.+.+..+  .+.+ .|+|+++|++|++.+++...  ....+|+..
T Consensus        44 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--~~gd~vl~~  121 (386)
T 1u08_A           44 GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV--RNGDEVICF  121 (386)
T ss_dssp             CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC--CCCCEEEEe
Confidence            5689999999998762 11111  123344556666654333  3456 89999999999999999752  222456654

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=97.58  E-value=0.00073  Score=44.43  Aligned_cols=74  Identities=9%  Similarity=-0.030  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHHHHHhh-----ccC-C-CCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           7 HCHPAVVKAACTQLALL-----NTN-N-RFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~-----~~~-~-~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      ..+|.+.+++.++++..     ..+ . ....+....+++.+.+..+  .+.+.|+|+++|++|++.+++.... .|+.+
T Consensus        48 ~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~-~g~d~  126 (398)
T 3ele_A           48 PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTS-DAYDE  126 (398)
T ss_dssp             CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC-STTCE
T ss_pred             CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcC-CCCCE
Confidence            35789999999998762     111 1 1113444666666655433  3456899999999999999997632 34346


Q ss_pred             eEEe
Q psy6206          78 VITQ   81 (83)
Q Consensus        78 ii~~   81 (83)
                      |+..
T Consensus       127 vl~~  130 (398)
T 3ele_A          127 FITI  130 (398)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6654

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=97.58  E-value=0.00057  Score=45.31  Aligned_cols=72  Identities=14%  Similarity=-0.076  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHHHHhh-c-cCC-CCcchHHHHHHHHHHhhCC--CCCC-eEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALL-N-TNN-RFLHDNLVLCARKLASLLP--DPLS-VCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~-~-~~~-~~~~~~~~~la~~l~~~~p--~~~~-~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|.+.+++.++++.. . ... ....+....+++.+.+..+  .+.+ .|+|+++|++|++.+++.... .| .+|+..
T Consensus        39 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~-~g-d~Vl~~  116 (411)
T 2o0r_A           39 GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVE-PG-SEVLLI  116 (411)
T ss_dssp             CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCC-TT-CEEEEE
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcC-CC-CEEEEe
Confidence            4789999999999762 1 111 1123444566666655433  3355 899999999999999997632 23 456654

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=97.55  E-value=0.00011  Score=47.72  Aligned_cols=66  Identities=20%  Similarity=0.163  Sum_probs=43.5

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      +|++.+++.+.+.   .....+.+...+|.+.|.+..+  .+...|++||++|++.+++......++..|+
T Consensus        28 ~p~v~~ai~~~~~---~~~~~~~~~~~~l~~~la~~~~--~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi   93 (359)
T 3pj0_A           28 LTEALQNIDDNLE---SDIYGNGAVIEDFETKIAKILG--KQSAVFFPSGTMAQQIALRIWADRKENRRVA   93 (359)
T ss_dssp             HHHHTTTSCTTCB---CCBTTBSHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CHHHHHHHHhhcc---cCcccCCHHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            4666666665221   1112234667888999988874  3455677999999999999877655443344

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=97.55  E-value=0.00044  Score=46.03  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=48.1

Q ss_pred             CCCCHHHHHHHHHHHHhhc-cC-CCCc-----chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           6 GHCHPAVVKAACTQLALLN-TN-NRFL-----HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~-~~-~~~~-----~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      ++.+|++++++.++++... .+ ..+.     .+...++.+.|.+.++.+.+.++|+++|+||++.+++...
T Consensus        28 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~   99 (432)
T 3a9z_A           28 TPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTV   99 (432)
T ss_dssp             CCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHH
Confidence            3678999999999987642 11 2221     1234678888888876545689999999999999999764

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=97.55  E-value=0.00024  Score=47.17  Aligned_cols=75  Identities=11%  Similarity=0.008  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhhc---cC-CCCcchHHHHHHHHHHhhCC--CCC-CeEEeeCChHHHHHHHHHHHHhhcCCC
Q psy6206           4 PVGHCHPAVVKAACTQLALLN---TN-NRFLHDNLVLCARKLASLLP--DPL-SVCFFVNSGSEANDLALRLARVHTNND   76 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~---~~-~~~~~~~~~~la~~l~~~~p--~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~   76 (83)
                      .+| .+|.+.+++.++++...   .. .....+....+++.+.+..+  .+. +.|+|+++|++|++.+++...  ....
T Consensus        48 ~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~--~~gd  124 (412)
T 2x5d_A           48 DGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--DHGD  124 (412)
T ss_dssp             CSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC--CTTC
T ss_pred             CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC--CCCC
Confidence            344 67999999998876531   11 11122334455555543323  234 589999999999999999752  2224


Q ss_pred             ceEEe
Q psy6206          77 DVITQ   81 (83)
Q Consensus        77 ~ii~~   81 (83)
                      +|+..
T Consensus       125 ~Vl~~  129 (412)
T 2x5d_A          125 TILVP  129 (412)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            56654

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=97.55  E-value=0.00034  Score=44.90  Aligned_cols=59  Identities=25%  Similarity=0.190  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      -+|.+.+++.++++..   ..++.+...++.+.+.+..+.+.+.++|+++++++++.+++..
T Consensus        30 ~~~~v~~a~~~~~~~~---~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~   88 (337)
T 3p1t_A           30 VEPRVQAAIAAAAARI---NRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF   88 (337)
T ss_dssp             CCHHHHHHHHHHGGGT---TSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHhhhhh---ccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc
Confidence            4689999998877654   2345566678888888887655679999999999999999865

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=97.53  E-value=0.00028  Score=47.05  Aligned_cols=72  Identities=13%  Similarity=-0.080  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhhc---cC-CCCcchHHHHHHHHHHhhCC--CCCC--eEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          10 PAVVKAACTQLALLN---TN-NRFLHDNLVLCARKLASLLP--DPLS--VCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        10 p~i~~a~~~~~~~~~---~~-~~~~~~~~~~la~~l~~~~p--~~~~--~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      |.|.+++.++++...   +. .....+....+++.+.....  ...+  .++++++|++|++.++++........+|+..
T Consensus        70 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~  149 (420)
T 4f4e_A           70 RAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAIS  149 (420)
T ss_dssp             HHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEe
Confidence            899999999887621   11 11122334555555543221  0234  8999999999999999876655444456653

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.0012  Score=45.03  Aligned_cols=66  Identities=12%  Similarity=0.045  Sum_probs=47.7

Q ss_pred             CCCHHHHHHHHHHHHhh-cc-CC---CCc--chHHHHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHHHHHHhh
Q psy6206           7 HCHPAVVKAACTQLALL-NT-NN---RFL--HDNLVLCARKLASLLPDP--LSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~-~~-~~---~~~--~~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      +.++.+.+++.+++... .. ..   .++  .+...++.+.+.+.++.+  .+.++|+++|+||+..+++.++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~  149 (497)
T 3mc6_A           75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMY  149 (497)
T ss_dssp             CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHH
Confidence            45688999999988774 21 11   111  133456777788887643  568999999999999999999875

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=97.51  E-value=0.00061  Score=44.66  Aligned_cols=72  Identities=13%  Similarity=-0.031  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHHHHhhc-cCCC--CcchHHHHHHHHHHhhCC--CCCCe-EEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALLN-TNNR--FLHDNLVLCARKLASLLP--DPLSV-CFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~-~~~~--~~~~~~~~la~~l~~~~p--~~~~~-v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|++.+++.++++... .+..  ...+....+++.+.+..+  .+.+. ++++++|++|++.+++...  ....+|+..
T Consensus        40 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--~~gd~vl~~  117 (389)
T 1gd9_A           40 TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL--KDGEEVLIP  117 (389)
T ss_dssp             CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC--CTTCEEEEE
T ss_pred             CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC--CCCCEEEEc
Confidence            57899999999987631 1111  123444566666654333  23567 9999999999999998652  222456654

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=97.50  E-value=0.00012  Score=47.16  Aligned_cols=70  Identities=13%  Similarity=0.131  Sum_probs=47.2

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|++.+++.++++. +. .....+...++.+.|.+..+.+.+.++++++|++|++.+++...  ....+|++.
T Consensus        12 ~~~~v~~a~~~~~~~-~~-~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~   81 (352)
T 1iug_A           12 LHPKALEALARPQLH-HR-TEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--APGERVLVP   81 (352)
T ss_dssp             CCHHHHHHHHSCCCC-TT-SHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             CCHHHHHHhccCCCC-cc-CHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--CCCCeEEEE
Confidence            468899888776542 11 11112345778888888876545689999999999999999762  223456654

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=97.49  E-value=0.0003  Score=46.29  Aligned_cols=71  Identities=17%  Similarity=0.020  Sum_probs=49.0

Q ss_pred             CCHHHHHHHHHHHHhhc---c-CCCCcchHHHHHHHHHHhhCCCC--C-CeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           8 CHPAVVKAACTQLALLN---T-NNRFLHDNLVLCARKLASLLPDP--L-SVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~---~-~~~~~~~~~~~la~~l~~~~p~~--~-~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      .+|+|.+++.++++...   . ......+....+++.+.+..+.+  . +.++|+++|++|++.+++..  .....+|++
T Consensus        54 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l--~~~gd~vl~  131 (407)
T 3nra_A           54 PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT--VARGDKVAI  131 (407)
T ss_dssp             CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT--CCTTCEEEE
T ss_pred             CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh--CCCCCEEEE
Confidence            57889999999987631   1 12233456677888887766432  2 68999999999999999854  222334554

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=97.46  E-value=0.0001  Score=48.08  Aligned_cols=73  Identities=15%  Similarity=0.187  Sum_probs=48.7

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           5 VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .++.+|++.+++.+++.. +. +....+...++++.+.+..+.+ .+.++|+++|++|++.+++...  ....+|++.
T Consensus        28 ~~~~~~~v~~a~~~~~~~-~~-~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~--~~gd~vl~~  101 (386)
T 2dr1_A           28 PVACFPEVLEIMKVQMFS-HR-SKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGV--SKGGKVLVT  101 (386)
T ss_dssp             SCCCCHHHHHHTTSCCCC-TT-SHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHS--CTTCEEEEE
T ss_pred             CcCCcHHHHHHHhccccc-cc-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhh--cCCCeEEEE
Confidence            456678888888765532 11 1112355677888888877643 4579999999999999999652  233456654

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.45  E-value=0.00045  Score=46.14  Aligned_cols=75  Identities=9%  Similarity=-0.083  Sum_probs=48.3

Q ss_pred             CCCCCHHHHHHHHHHHHhhc-cCCCC-----cchHHHHHHHHHHhhCC---CCCCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206           5 VGHCHPAVVKAACTQLALLN-TNNRF-----LHDNLVLCARKLASLLP---DPLSVCFFVNSGSEANDLALRLARVHTNN   75 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~-~~~~~-----~~~~~~~la~~l~~~~p---~~~~~v~f~~sGseA~e~Alk~ar~~~~r   75 (83)
                      .||.+|++.+++.++++... ....+     ..+....+++.+.+..+   .+.+.|+|+++|++|++.+++.... .| 
T Consensus        56 ~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~-~g-  133 (425)
T 1vp4_A           56 ETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLD-DE-  133 (425)
T ss_dssp             GGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCC-TT-
T ss_pred             ccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCC-CC-
Confidence            46778999999999887631 01112     23444566666644323   3456899999999999999986521 22 


Q ss_pred             CceEEe
Q psy6206          76 DDVITQ   81 (83)
Q Consensus        76 ~~ii~~   81 (83)
                      .+|++.
T Consensus       134 d~Vl~~  139 (425)
T 1vp4_A          134 SYCVLD  139 (425)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            356654

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=97.45  E-value=0.00022  Score=47.15  Aligned_cols=69  Identities=17%  Similarity=0.030  Sum_probs=39.9

Q ss_pred             cCCCCCC----HHHHHHHHHHHHhhc-c------CCCCcc-hHHHHHHHHHHhhC------CCCCCeEEeeCChHHHHHH
Q psy6206           3 LPVGHCH----PAVVKAACTQLALLN-T------NNRFLH-DNLVLCARKLASLL------PDPLSVCFFVNSGSEANDL   64 (83)
Q Consensus         3 ~~lGh~~----p~i~~a~~~~~~~~~-~------~~~~~~-~~~~~la~~l~~~~------p~~~~~v~f~~sGseA~e~   64 (83)
                      ++||+++    |.+.+++.+++.+.. .      ...|.. .-..+|.+.+.+.+      +.+.++|+|+++|+||++.
T Consensus        34 i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~  113 (417)
T 3g7q_A           34 IMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFY  113 (417)
T ss_dssp             EECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHH
T ss_pred             eEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHH
Confidence            5677764    334566666554430 0      012221 11234444444432      3345799999999999999


Q ss_pred             HHHHHHh
Q psy6206          65 ALRLARV   71 (83)
Q Consensus        65 Alk~ar~   71 (83)
                      +++....
T Consensus       114 ~~~~l~~  120 (417)
T 3g7q_A          114 LFNLFAG  120 (417)
T ss_dssp             HHHHHSB
T ss_pred             HHHHHcC
Confidence            9997754

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.44  E-value=0.0009  Score=44.12  Aligned_cols=75  Identities=16%  Similarity=0.010  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhhc-cCC--CCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206           4 PVGHCHPAVVKAACTQLALLN-TNN--RFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLARVHTNNDDV   78 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~-~~~--~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~i   78 (83)
                      .+|+ +|.+.+++.++++... .+.  ....+....+++.+.+..+  .+.+.++++++|++|++.+++...  ....+|
T Consensus        52 ~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~--~~gd~V  128 (389)
T 1o4s_A           52 DFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL--DPGDEV  128 (389)
T ss_dssp             SSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC--CTTCEE
T ss_pred             CCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC--CCCCEE
Confidence            3454 6899999999886531 111  1123344556666544322  235689999999999999999762  222356


Q ss_pred             EEe
Q psy6206          79 ITQ   81 (83)
Q Consensus        79 i~~   81 (83)
                      +..
T Consensus       129 l~~  131 (389)
T 1o4s_A          129 IVF  131 (389)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            554

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=97.44  E-value=0.0027  Score=41.80  Aligned_cols=73  Identities=21%  Similarity=0.192  Sum_probs=49.4

Q ss_pred             CCC-CCHHHHHHHHHHHHhhcc-C----CCC-cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH-HhhcCCC
Q psy6206           5 VGH-CHPAVVKAACTQLALLNT-N----NRF-LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA-RVHTNND   76 (83)
Q Consensus         5 lGh-~~p~i~~a~~~~~~~~~~-~----~~~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a-r~~~~r~   76 (83)
                      +|+ .+|++.+++.++++.... .    ..+ .++...++.+.|.+.++. .+.++| +||++++..++++. +..+|. 
T Consensus        57 ~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~-~sG~~a~~~~~~~l~~~~~gd-  133 (401)
T 2bwn_A           57 LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAALVF-SSAYNANDATLSTLRVLFPGL-  133 (401)
T ss_dssp             TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEEEE-SCHHHHHHHHHHHHHHHSTTC-
T ss_pred             ccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEEEE-CCcHHHHHHHHHHHhcCCCCC-
Confidence            454 378999999999987421 1    112 345678899999998864 344555 88999999999864 333453 


Q ss_pred             ceEE
Q psy6206          77 DVIT   80 (83)
Q Consensus        77 ~ii~   80 (83)
                      .|+.
T Consensus       134 ~Vl~  137 (401)
T 2bwn_A          134 IIYS  137 (401)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=97.44  E-value=0.0012  Score=43.23  Aligned_cols=72  Identities=17%  Similarity=-0.036  Sum_probs=46.3

Q ss_pred             CCHHHHHHHHHHHHhh-ccCCC--CcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALL-NTNNR--FLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~-~~~~~--~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|.+.+++.++++.. ..+..  ...+....+++.+.+..+  .+.+.++|+++|++|++.+++.... .| .+|+..
T Consensus        44 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~-~g-d~vl~~  120 (388)
T 1j32_A           44 TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIE-PG-DEVIIP  120 (388)
T ss_dssp             CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCC-TT-CEEEEE
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcC-CC-CEEEEc
Confidence            4689999999988653 11111  123444566666654332  2356899999999999999997632 23 356654

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=97.43  E-value=0.0014  Score=43.43  Aligned_cols=66  Identities=26%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      |++.+++.++++....   .+.+...++.+.|.+.++.  +.++|+++|++|++.+++..+.-.| .+|+..
T Consensus        44 ~~v~~a~~~~~~~~~y---~~~~~~~~l~~~la~~~~~--~~~v~~~~Gt~a~~~~l~~~~~~~g-d~vl~~  109 (399)
T 2oga_A           44 AETDAAIARVLDSGRY---LLGPELEGFEAEFAAYCET--DHAVGVNSGMDALQLALRGLGIGPG-DEVIVP  109 (399)
T ss_dssp             HHHHHHHHHHHHHTCC---SSSHHHHHHHHHHHHHTTS--SEEEEESCHHHHHHHHHHHTTCCTT-CEEEEE
T ss_pred             HHHHHHHHHHHhcCCC---CCchhHHHHHHHHHHHHCC--CeEEEecCHHHHHHHHHHHhCCCCc-CEEEEC
Confidence            7888898888865311   1235678899999998854  3788999999999999987642233 356654

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=97.43  E-value=0.00045  Score=45.90  Aligned_cols=75  Identities=4%  Similarity=-0.165  Sum_probs=45.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhh--c-cCC-CCcchHHHHHHHHHHhhCCCC---CCeEEeeCChHHHHHHHHHHHHhhcCCC
Q psy6206           4 PVGHCHPAVVKAACTQLALL--N-TNN-RFLHDNLVLCARKLASLLPDP---LSVCFFVNSGSEANDLALRLARVHTNND   76 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~--~-~~~-~~~~~~~~~la~~l~~~~p~~---~~~v~f~~sGseA~e~Alk~ar~~~~r~   76 (83)
                      .+| .+|.+.+++.++++..  . ... ....+....+++.+.+..+.+   .+.|+|+++|++|++.+++.... .| .
T Consensus        58 ~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~-~g-d  134 (404)
T 2o1b_A           58 DGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVIN-PG-D  134 (404)
T ss_dssp             SSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCC-TT-C
T ss_pred             CCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcC-CC-C
Confidence            345 4799999999987542  1 111 112233455555554433432   26899999999999999997532 22 3


Q ss_pred             ceEEe
Q psy6206          77 DVITQ   81 (83)
Q Consensus        77 ~ii~~   81 (83)
                      +|+..
T Consensus       135 ~Vl~~  139 (404)
T 2o1b_A          135 YVLLP  139 (404)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            56554

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=97.43  E-value=0.0001  Score=48.28  Aligned_cols=70  Identities=10%  Similarity=-0.021  Sum_probs=47.3

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCC-eEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLS-VCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~-~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|++.+++.+++... . ...+.+...++.+.+.+.++.+.+ .++|+++|+||++.+++...  ....+|+..
T Consensus        30 ~~~~v~~a~~~~~~~~-~-~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--~~gd~vl~~  100 (393)
T 2huf_A           30 APQRVLDAMSRPILGH-L-HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL--EDGDVILIG  100 (393)
T ss_dssp             CCHHHHHHTTSCCCCT-T-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             CCHHHHHHHHhhhccC-C-CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh--CCCCEEEEE
Confidence            4688888887655431 1 112234567788888888765444 79999999999999999762  223456654

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=97.42  E-value=0.00031  Score=46.73  Aligned_cols=76  Identities=11%  Similarity=-0.067  Sum_probs=49.3

Q ss_pred             cCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206           3 LPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD   82 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~   82 (83)
                      ..+.+.+++...++.+.....+..+.++++...+|.+.|.+..+.  +.+++++||++|++.+++..  .....+||+.+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~  105 (389)
T 3acz_A           30 STFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGA--AGSAAFGSGMGAISSSTLAF--LQKGDHLIAGD  105 (389)
T ss_dssp             SBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTTT--CCTTCEEEEES
T ss_pred             CceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHH--hCCCCEEEEeC
Confidence            456666665444332221112334556778888999999998854  37888899999999999854  22334566543

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=97.41  E-value=0.00077  Score=44.93  Aligned_cols=52  Identities=25%  Similarity=0.181  Sum_probs=40.1

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD   82 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~   82 (83)
                      +.+.++...+|.++|.+..+.  +.++|++||++|++.+++..  .....+||+.+
T Consensus        61 ~r~~~~~~~~l~~~la~~~g~--~~~~~~~sGt~A~~~al~~~--~~~gd~Vi~~~  112 (392)
T 3qhx_A           61 ARTGNPTRTALEAALAAVEDA--AFGRAFSSGMAAADCALRAM--LRPGDHVVIPD  112 (392)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTC--SEEEEESSHHHHHHHHHHHH--CCTTCEEEEET
T ss_pred             cCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEeC
Confidence            445677788999999999854  48999999999999999965  23334676653

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=97.39  E-value=0.00023  Score=46.84  Aligned_cols=69  Identities=13%  Similarity=0.097  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCe-EEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSV-CFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~-v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +|++.+++.+++.. +. .....+...++.+.+.+..+.+.+. ++|++||++|++.+++..  .....+||+.
T Consensus        25 ~~~v~~a~~~~~~~-~~-~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~   94 (411)
T 3nnk_A           25 DPRVLRAMSSQLIG-QY-DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVP   94 (411)
T ss_dssp             CHHHHHHHTSCCCC-TT-CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred             CHHHHHHhhccccc-cc-cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEe
Confidence            57777777654311 11 1111244577888888877654444 889999999999999976  3344466654

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=97.39  E-value=0.0013  Score=43.05  Aligned_cols=67  Identities=18%  Similarity=0.057  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .|++.+++.++++....   .+.+...++.+.|.+.++.  +.+++++||++|++.+++..+.-.| .+|+..
T Consensus        19 ~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~la~~~~~--~~~~~~~~gt~al~~~~~~~~~~~g-d~Vl~~   85 (393)
T 1mdo_A           19 GAEELAAVKTVLDSGWI---TTGPKNQELEAAFCRLTGN--QYAVAVSSATAGMHIALMALGIGEG-DEVITP   85 (393)
T ss_dssp             CHHHHHHHHHHHHHTCC---SSSHHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTCCTT-CEEEEE
T ss_pred             CHHHHHHHHHHHhcCCc---CCChHHHHHHHHHHHHhCC--CcEEEecChHHHHHHHHHHcCCCCC-CEEEeC
Confidence            47888999888876421   2346677888999988853  5899999999999999997642223 356553

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=97.35  E-value=0.0013  Score=43.13  Aligned_cols=69  Identities=22%  Similarity=0.181  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .|++.+++.++++... ....+.+...++.+.|.+.++.  +...+.+||++|++.+++..+.-.| .+||+.
T Consensus        16 ~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~al~~~l~~l~~~~g-d~Vi~~   84 (388)
T 1b9h_A           16 DDAERNGLVRALEQGQ-WWRMGGDEVNSFEREFAAHHGA--AHALAVTNGTHALELALQVMGVGPG-TEVIVP   84 (388)
T ss_dssp             CHHHHHHHHHHHHTSC-CBTTTCSHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTTCCTT-CEEEEE
T ss_pred             CHHHHHHHHHHHHcCC-eeecCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcCCCCc-CEEEEC
Confidence            3889999999987631 1223345677899999998854  3566777899999999997642233 356553

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=97.35  E-value=0.0014  Score=43.08  Aligned_cols=70  Identities=16%  Similarity=-0.100  Sum_probs=42.7

Q ss_pred             CHHHHHHHHHHHHhh-c-cCC-CCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           9 HPAVVKAACTQLALL-N-TNN-RFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~-~-~~~-~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      +|++.+++.++++.. . ... ....+....+++.+.+..  +.+.+.|+|+++|+||++.+++.... .| .+|+.
T Consensus        46 ~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~-~g-d~vl~  120 (391)
T 3h14_A           46 PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFD-SG-DRVGI  120 (391)
T ss_dssp             CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCC-TT-CEEEE
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcC-CC-CEEEE
Confidence            788999999988652 1 111 112334455666655432  23456999999999999999986532 23 34554

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=97.35  E-value=0.0017  Score=43.28  Aligned_cols=63  Identities=11%  Similarity=0.018  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhhccCCCCc--chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          10 PAVVKAACTQLALLNTNNRFL--HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~--~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      |++.+++.+.++..    .++  .+...++.+.|.+.++  .+.++|+++|++|++.+++...  .| .+|++.
T Consensus        32 ~~~~~a~~~~~~~~----~y~~~~~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~l~~l~--~g-d~Vlv~   96 (424)
T 2po3_A           32 ARLYERLDRALDSQ----WLSNGGPLVREFEERVAGLAG--VRHAVATCNATAGLQLLAHAAG--LT-GEVIMP   96 (424)
T ss_dssp             HHHHHHHHHHHHHT----CCSSSCHHHHHHHHHHHHHHT--SSEEEEESCHHHHHHHHHHHHT--CC-SEEEEE
T ss_pred             HHHHHHHHHHHhcC----CcccCCHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcC--CC-CEEEEC
Confidence            57888888877653    233  3567788899998884  3589999999999999999764  34 456654

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=97.34  E-value=0.00046  Score=45.47  Aligned_cols=71  Identities=8%  Similarity=-0.104  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHhh--ccCCC--CcchHHHHHHHHHHhhCC--CCC-CeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           9 HPAVVKAACTQLALL--NTNNR--FLHDNLVLCARKLASLLP--DPL-SVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~--~~~~~--~~~~~~~~la~~l~~~~p--~~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +|.+.+++.++++..  ..+..  ...+....+++.+.+..+  ... +.|+|+++|++|++.+++...  ....+|+..
T Consensus        38 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~--~~gd~vl~~  115 (410)
T 3e2y_A           38 PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV--DPGDEVIIM  115 (410)
T ss_dssp             CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             CHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc--CCCCEEEEe
Confidence            577999999988753  11111  123445566666665332  223 689999999999999998762  223356553

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=97.33  E-value=0.00025  Score=46.70  Aligned_cols=76  Identities=9%  Similarity=0.012  Sum_probs=48.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccC--CCCcchHHHHHHHHHHhhCCCCCCeEE-eeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           4 PVGHCHPAVVKAACTQLALLNTN--NRFLHDNLVLCARKLASLLPDPLSVCF-FVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~~~--~~~~~~~~~~la~~l~~~~p~~~~~v~-f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      .+|+..+.+.+++.+++.+....  .....+...++.+.|.+..+.+.+.++ +++||++|++.+++..  +....+||.
T Consensus        14 ~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~   91 (416)
T 3isl_A           14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLI   91 (416)
T ss_dssp             ECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEE
T ss_pred             eecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEE
Confidence            46776655666666655542111  111234467888999998876555555 8999999999999865  444456665


Q ss_pred             e
Q psy6206          81 Q   81 (83)
Q Consensus        81 ~   81 (83)
                      .
T Consensus        92 ~   92 (416)
T 3isl_A           92 P   92 (416)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=97.32  E-value=0.00052  Score=45.46  Aligned_cols=73  Identities=10%  Similarity=-0.093  Sum_probs=45.0

Q ss_pred             CCCHHHHHHHHHHHHhhcc--CC--CCcchHHHHHHHHHHhh--------CCCCCCeEEeeCChHHHHHHHHHHHHhhcC
Q psy6206           7 HCHPAVVKAACTQLALLNT--NN--RFLHDNLVLCARKLASL--------LPDPLSVCFFVNSGSEANDLALRLARVHTN   74 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~~~--~~--~~~~~~~~~la~~l~~~--------~p~~~~~v~f~~sGseA~e~Alk~ar~~~~   74 (83)
                      ..+|++.+++.++++....  +.  ....+....+++.+.+.        .+.+.+.|+++++|++|++.+++.... .|
T Consensus        50 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~-~g  128 (416)
T 1bw0_A           50 LTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICD-AG  128 (416)
T ss_dssp             CCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCC-TT
T ss_pred             CCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCC-CC
Confidence            3578999999999876311  11  11223345566665521        112356899999999999999997621 23


Q ss_pred             CCceEEe
Q psy6206          75 NDDVITQ   81 (83)
Q Consensus        75 r~~ii~~   81 (83)
                       .+|+..
T Consensus       129 -d~vl~~  134 (416)
T 1bw0_A          129 -DYALVP  134 (416)
T ss_dssp             -CEEEEE
T ss_pred             -CEEEEc
Confidence             356554

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=97.31  E-value=0.00015  Score=47.25  Aligned_cols=69  Identities=14%  Similarity=0.099  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCC-eEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLS-VCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~-~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +|++.+++.+++.. +. ...+.+...++.+.|.+..+.+.. .++|+++|++|++.+++..  .....+||..
T Consensus        35 ~~~v~~a~~~~~~~-~~-~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~  104 (393)
T 3kgw_A           35 APRVLAAGSLRMIG-HM-QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTG  104 (393)
T ss_dssp             CHHHHHHTTCCCCC-TT-SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEE
T ss_pred             CHHHHHHhcccccC-cc-cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEE
Confidence            67777777664311 11 111234556788888888764433 5999999999999999976  3334455543

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=97.31  E-value=0.00098  Score=45.73  Aligned_cols=67  Identities=15%  Similarity=0.068  Sum_probs=45.7

Q ss_pred             CCCHHHHHHHHHHHHhh-cc-C---CCCc--chHHHHHHHHHHhhCCCCC--CeE--EeeCChHHHHHHHHHHHHhhc
Q psy6206           7 HCHPAVVKAACTQLALL-NT-N---NRFL--HDNLVLCARKLASLLPDPL--SVC--FFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~-~~-~---~~~~--~~~~~~la~~l~~~~p~~~--~~v--~f~~sGseA~e~Alk~ar~~~   73 (83)
                      |.++.+.+++.+++... .. .   ..++  .+...++.+.+.+..+.+.  +.+  +|+++|+||++.+++.++...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g  184 (514)
T 3mad_A          107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWA  184 (514)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHh
Confidence            45688888888877654 11 1   1121  1223556677788775432  466  999999999999999998765

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=97.29  E-value=0.00074  Score=44.90  Aligned_cols=63  Identities=10%  Similarity=-0.009  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHHHHHhhc-c-CCC--CcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLN-T-NNR--FLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~-~-~~~--~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      .+|++.+++.++++... . +..  ...+....+++.+....  +...+.++|+++|++|++.+++...
T Consensus        58 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~  126 (437)
T 3g0t_A           58 APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVAN  126 (437)
T ss_dssp             CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHh
Confidence            57999999999887521 1 111  11233455555555432  1235689999999999999999765

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.29  E-value=0.0011  Score=43.92  Aligned_cols=71  Identities=10%  Similarity=-0.021  Sum_probs=45.0

Q ss_pred             CCHHHHHHHHHHHHhhc--cCC-CCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALLN--TNN-RFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~--~~~-~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|.+.+++ ++++...  ... ....+....+++.+....+  .+.+.++++++|++|++.+++...  ....+|+..
T Consensus        57 ~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--~~gd~Vl~~  132 (409)
T 2gb3_A           57 TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA--NPGDEILVL  132 (409)
T ss_dssp             CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC--CCCCEEEEc
Confidence            367899999 8876531  111 1123445666666665332  234689999999999999999762  223456654

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=97.27  E-value=0.0019  Score=43.56  Aligned_cols=72  Identities=13%  Similarity=-0.014  Sum_probs=47.1

Q ss_pred             CCHHHHHHHHHHHHh--hc-cCCC-CcchHHHHHHHHHHhhCCC--CCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLAL--LN-TNNR-FLHDNLVLCARKLASLLPD--PLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~--~~-~~~~-~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|.+.+++.++++.  .. .... ...+....+++.+.+..+.  +.+.|+++++|+||++.+++.... .| .+||..
T Consensus        71 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~-~g-d~Vlv~  148 (447)
T 3b46_A           71 PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLN-AG-DEVIVF  148 (447)
T ss_dssp             CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCC-TT-CEEEEE
T ss_pred             CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcC-CC-CEEEEe
Confidence            468999999998875  21 1111 1234456677777665432  235899999999999999997632 23 356654

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=97.27  E-value=8.5e-05  Score=48.34  Aligned_cols=68  Identities=12%  Similarity=0.144  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCC--CeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPL--SVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~--~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +|++.+++.+++...  ......+...++.+.+.+..+.+.  +.++|+++|++|++ +++..  .....+||..
T Consensus        14 ~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~--~~~gd~vi~~   83 (384)
T 3zrp_A           14 KEDVLVAGLENNVGF--TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL--LKPNDKILVV   83 (384)
T ss_dssp             CHHHHHHTTCCSCCT--TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG--CCTTCEEEEE
T ss_pred             CHHHHHHhhcccccc--ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh--cCCCCEEEEe
Confidence            677877776654321  111223455778888888876544  78999999999999 88643  3344466654

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=97.26  E-value=0.00046  Score=44.78  Aligned_cols=73  Identities=22%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             CCCC-CHHHHHHHHHHHHhh--c-cCCCCc-chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           5 VGHC-HPAVVKAACTQLALL--N-TNNRFL-HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         5 lGh~-~p~i~~a~~~~~~~~--~-~~~~~~-~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      +|.+ ||.+.+++.++++..  . ....+. .+...+|.+.|.+..+.  +...|.+||++|++.+++......++..||
T Consensus        15 l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~--~~~i~~~~G~~a~~~al~~~~~~gd~~~vi   92 (357)
T 3lws_A           15 QISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLGM--DDAVFFPSGTMAQQVALRIWSDETDNRTVA   92 (357)
T ss_dssp             ESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             cccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhCC--CcEEEecCcHHHHHHHHHHHhhcCCCcEEE
Confidence            4553 577888887777652  1 112232 35567888888888753  456677999999999999776654433454

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=97.20  E-value=0.0026  Score=42.04  Aligned_cols=72  Identities=10%  Similarity=-0.047  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHHHHHhhc-cCCC--CcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALLN-TNNR--FLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~-~~~~--~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|++.+++.++++... .+..  ...+....+++.+.+..  +.+.+.++++++|++|++.+++...  ....+|+..
T Consensus        55 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--~~gd~Vl~~  131 (406)
T 1xi9_A           55 PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL--DPGDEILVP  131 (406)
T ss_dssp             CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC--CCCCEEEEc
Confidence            36899999999887642 1111  12344456666665432  3345689999999999999999762  223456654

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=97.16  E-value=0.0035  Score=42.45  Aligned_cols=73  Identities=10%  Similarity=-0.046  Sum_probs=45.1

Q ss_pred             CCCHHHHHHHHHHHHhh-----ccCC-CCcchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           7 HCHPAVVKAACTQLALL-----NTNN-RFLHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~-----~~~~-~~~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      +.+|++.+++.++++..     .+.. ....+....+++.+.+..+. +.+.|+++++|++|++.+++.... .| ..|+
T Consensus        91 ~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~-~G-d~Vl  168 (448)
T 3aow_A           91 FPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLN-PG-DIVV  168 (448)
T ss_dssp             SCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCC-TT-CEEE
T ss_pred             CCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcC-CC-CEEE
Confidence            45678999999988753     1111 11223344555555333232 467999999999999999997522 23 3565


Q ss_pred             Ee
Q psy6206          80 TQ   81 (83)
Q Consensus        80 ~~   81 (83)
                      ..
T Consensus       169 v~  170 (448)
T 3aow_A          169 VE  170 (448)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=97.15  E-value=0.0013  Score=43.35  Aligned_cols=72  Identities=19%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             CCCCHHHHHHHHHHHHhhc-c---CCCC-----cchHHHHHH-HHHHhhCCCCCCeE-EeeCChHHHHHHHHHHHHhhcC
Q psy6206           6 GHCHPAVVKAACTQLALLN-T---NNRF-----LHDNLVLCA-RKLASLLPDPLSVC-FFVNSGSEANDLALRLARVHTN   74 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~-~---~~~~-----~~~~~~~la-~~l~~~~p~~~~~v-~f~~sGseA~e~Alk~ar~~~~   74 (83)
                      .+.+|+|++++.+++.... .   ...+     ..+...+++ +.+.+..+  .+.+ ++++||++|++.+++..  ...
T Consensus        42 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~v~~~~Gs~a~~~al~~~--~~~  117 (425)
T 3ecd_A           42 NIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFN--AGHANVQPHSGAQANGAVMLAL--AKP  117 (425)
T ss_dssp             CCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHT--CSEEECCCSSHHHHHHHHHHHH--CCT
T ss_pred             CCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhC--CCCceeecCchHHHHHHHHHHc--cCC
Confidence            4558999999999885321 0   0111     112445555 55666664  3445 45999999999999976  333


Q ss_pred             CCceEEe
Q psy6206          75 NDDVITQ   81 (83)
Q Consensus        75 r~~ii~~   81 (83)
                      ..+||+.
T Consensus       118 gd~Vi~~  124 (425)
T 3ecd_A          118 GDTVLGM  124 (425)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEc
Confidence            3456554

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=97.15  E-value=0.00032  Score=45.97  Aligned_cols=69  Identities=13%  Similarity=0.056  Sum_probs=44.7

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCC-eEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLS-VCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~-~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +|++.+++.+++.. + .+..+.+...++.+.|.+.++.+.+ .++++++|+||++.+++...  ....+|+..
T Consensus        30 ~~~v~~a~~~~~~~-~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--~~gd~vl~~   99 (396)
T 2ch1_A           30 SKRVLTAMTNTVLS-N-FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--EEGDRVLIA   99 (396)
T ss_dssp             CHHHHHHTTSCCCC-T-TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             CHHHHHHhcccccc-C-CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--CCCCeEEEE
Confidence            46677766554321 0 1111223467888888888866555 79999999999999998762  223356654

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=97.14  E-value=0.00076  Score=44.44  Aligned_cols=64  Identities=20%  Similarity=0.080  Sum_probs=39.0

Q ss_pred             CCCCCHHHHHHHHHHHHhhc---c-C-----CCCcchHHHHHH-HHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           5 VGHCHPAVVKAACTQLALLN---T-N-----NRFLHDNLVLCA-RKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~---~-~-----~~~~~~~~~~la-~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      -.|.+|+|++++.+++....   . .     .....+...+++ +.+.+..+.+.+.+ +.+||++|++.+++..
T Consensus        39 ~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v-~~~sGs~a~~~a~~~~  112 (420)
T 3gbx_A           39 ENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANV-QPHSGSQANFAVYTAL  112 (420)
T ss_dssp             CCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCcee-EecCcHHHHHHHHHHh
Confidence            34679999999999885421   1 0     111123344444 56667665433333 4588999999999865

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=97.14  E-value=0.0017  Score=43.00  Aligned_cols=51  Identities=20%  Similarity=0.154  Sum_probs=38.1

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +.++++...++.+.+.+..+.  +.+++++||++|++.+++...  ....+||..
T Consensus        59 ~~~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~a~~~~l~~~~--~~gd~vi~~  109 (398)
T 2rfv_A           59 TRLGNPTTDALEKKLAVLERG--EAGLATASGISAITTTLLTLC--QQGDHIVSA  109 (398)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             eCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--CCCCEEEEc
Confidence            445677788999999998854  378888999999999999763  223456654

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=97.14  E-value=0.0021  Score=42.50  Aligned_cols=72  Identities=15%  Similarity=-0.044  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHHHHhhc----cCCC-CcchHHHHHHHHHHhhCCC--CC-CeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           8 CHPAVVKAACTQLALLN----TNNR-FLHDNLVLCARKLASLLPD--PL-SVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~----~~~~-~~~~~~~~la~~l~~~~p~--~~-~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      .+|.+.+++.++++...    +... ...+....+++.+.+..+.  .. +.|+|+++|++|++.+++...  ....+|+
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~--~~gd~vl  119 (422)
T 3fvs_A           42 PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV--DEGDEVI  119 (422)
T ss_dssp             CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC--CTTCEEE
T ss_pred             CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHc--CCCCEEE
Confidence            36889999999887621    1111 1234456677776654332  22 489999999999999999762  2333565


Q ss_pred             Ee
Q psy6206          80 TQ   81 (83)
Q Consensus        80 ~~   81 (83)
                      ..
T Consensus       120 ~~  121 (422)
T 3fvs_A          120 II  121 (422)
T ss_dssp             EE
T ss_pred             Ec
Confidence            53

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=97.14  E-value=0.003  Score=43.16  Aligned_cols=63  Identities=19%  Similarity=0.096  Sum_probs=39.5

Q ss_pred             CHHHHHHHHHHHHhhccCCCCc----chHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHh
Q psy6206           9 HPAVVKAACTQLALLNTNNRFL----HDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~----~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~   71 (83)
                      .|.+++++...+..........    .+...++.+.|.+.++.+ .+.+.|+++||||+..|++.+|.
T Consensus       113 ~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~  180 (497)
T 2qma_A          113 MPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARD  180 (497)
T ss_dssp             HHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHH
Confidence            4667666655443221111111    122344566688887532 36899999999999999999875

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=97.13  E-value=0.00024  Score=48.01  Aligned_cols=79  Identities=6%  Similarity=-0.118  Sum_probs=52.8

Q ss_pred             cCCCCCCHHHHHHHHHHHHhhc-c--CC---C--CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh-c
Q psy6206           3 LPVGHCHPAVVKAACTQLALLN-T--NN---R--FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH-T   73 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~~-~--~~---~--~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~-~   73 (83)
                      +++|..++.+.+++.++++... .  ..   .  ...+...++.+.+.+..+.+.+.|+|+++++++++.+++..... .
T Consensus        74 ~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~  153 (465)
T 3e9k_A           74 NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTP  153 (465)
T ss_dssp             TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCS
T ss_pred             CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccC
Confidence            4567777888888888776531 1  10   1  11233356778888877655679999999999999999866332 2


Q ss_pred             CCCceEEe
Q psy6206          74 NNDDVITQ   81 (83)
Q Consensus        74 ~r~~ii~~   81 (83)
                      .+.+||+.
T Consensus       154 ~~~~Vl~~  161 (465)
T 3e9k_A          154 KRYKILLE  161 (465)
T ss_dssp             SSCEEEEE
T ss_pred             CCCEEEEc
Confidence            34557654

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=97.12  E-value=0.00096  Score=44.00  Aligned_cols=47  Identities=13%  Similarity=0.140  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206          32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD   82 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~   82 (83)
                      +...++++++.+.++.+ +.++|++||++|++.+++..   ..+.+||+++
T Consensus        35 ~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~---~~gd~vi~~~   81 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQL---TIDEDCLIIR   81 (379)
T ss_dssp             HHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHH---CTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhC---CCCCeEEEEe
Confidence            34566777788877654 68999999999999998654   3445777654

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=97.12  E-value=0.0006  Score=44.38  Aligned_cols=76  Identities=11%  Similarity=0.081  Sum_probs=45.4

Q ss_pred             ccCCCCC----CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206           2 SLPVGHC----HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDP--LSVCFFVNSGSEANDLALRLARVHTNN   75 (83)
Q Consensus         2 ~~~lGh~----~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Alk~ar~~~~r   75 (83)
                      +.+++.+    +|++.+++.+++.. +. .....+...++.+.+.+..+.+  .+.+++++||++|++.+++.... .| 
T Consensus        20 ~~~~~pgp~~~~~~v~~a~~~~~~~-~~-~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~-~g-   95 (376)
T 3f0h_A           20 MLNFTVGPVMSSEEVRAIGAEQVPY-FR-TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFT-KK-   95 (376)
T ss_dssp             CEECSSSSCCCCHHHHHHHTSCCCC-CS-SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCC-TT-
T ss_pred             ceeecCCCCCCcHHHHHHhcCCCCC-CC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccC-CC-
Confidence            4456665    57777777665421 11 1111244567777887775432  24566689999999999987642 23 


Q ss_pred             CceEEe
Q psy6206          76 DDVITQ   81 (83)
Q Consensus        76 ~~ii~~   81 (83)
                      .+||..
T Consensus        96 d~vi~~  101 (376)
T 3f0h_A           96 DKVLVI  101 (376)
T ss_dssp             CCEEEE
T ss_pred             CeEEEE
Confidence            345543

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=97.11  E-value=0.00062  Score=43.98  Aligned_cols=61  Identities=11%  Similarity=-0.031  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCC---CCCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLP---DPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p---~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+|++.+++.+++..... ..++.....++.+.|.+..+   .+.+.|+|+++|+|+++.+++..
T Consensus        33 ~~~~v~~a~~~~~~~~~~-~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~   96 (335)
T 1uu1_A           33 FPEDLVDEVFRRLNSDAL-RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF   96 (335)
T ss_dssp             CCHHHHHHHHHTCCGGGG-GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHhhhhhh-hcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh
Confidence            579999999988732111 12222223456666666554   34568999999999999999875

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=97.08  E-value=0.003  Score=41.96  Aligned_cols=70  Identities=19%  Similarity=0.063  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHhhccC--C--CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           9 HPAVVKAACTQLALLNTN--N--RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~--~--~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +|++.+++.++++.....  .  ....+...++.+.+.+..+.  +.++|++||++|++.+++..+.-.| .+||..
T Consensus        15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~--~~~i~~~~gt~al~~~~~~~~~~~g-d~Vl~~   88 (418)
T 2c81_A           15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV--PYCVPTTSGSTALMLALEALGIGEG-DEVIVP   88 (418)
T ss_dssp             CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTCCTT-CEEEEE
T ss_pred             CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCCCCc-CEEEEC
Confidence            589999999998764211  1  11123467888888888743  3788899999999999997643234 356553

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=97.04  E-value=0.00011  Score=47.17  Aligned_cols=68  Identities=18%  Similarity=0.051  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDP--LSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|++.+++.++++. +. .....+...++.+.|.+..+.+  .+.++|+++|++|++.+++....    .+|+..
T Consensus        11 ~~~~v~~a~~~~~~~-~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~----d~vl~~   80 (353)
T 2yrr_A           11 IPERVQKALLRPMRG-HL-DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR----GPVLVL   80 (353)
T ss_dssp             CCHHHHGGGGSCCCC-TT-CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC----CCEEEE
T ss_pred             CCHHHHHHHhccccc-cc-CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC----CcEEEE
Confidence            468888888776643 11 1111234678888888887543  46899999999999999986543    356553

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=96.09  E-value=9.8e-05  Score=48.75  Aligned_cols=61  Identities=16%  Similarity=-0.040  Sum_probs=39.8

Q ss_pred             CHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|++.+++.++++.. ..+.....+....+++.+.+..+  .+.+.|+++++|+||++.+++..
T Consensus        46 ~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~  109 (392)
T 3b1d_A           46 MPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF  109 (392)
Confidence            578999999988653 11111122333445555544333  33568999999999999999976

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=97.00  E-value=0.0027  Score=42.53  Aligned_cols=71  Identities=11%  Similarity=-0.015  Sum_probs=45.2

Q ss_pred             CCHHHHHHHHHHHHhhc---cCCCCcc-hHHHHHHHHHHhhC----CCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           8 CHPAVVKAACTQLALLN---TNNRFLH-DNLVLCARKLASLL----PDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~---~~~~~~~-~~~~~la~~l~~~~----p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      .+|+|.+++.++++.+.   ....+.. +...+|.+.+.+..    +...+.++|+++|+++++.+..+.   .....|+
T Consensus        83 ~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~~~l~---~~gd~Vl  159 (449)
T 3qgu_A           83 LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARIQMMF---GSKPTVA  159 (449)
T ss_dssp             CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHHHHHH---CSSSCEE
T ss_pred             CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHHHHHh---CCCCEEE
Confidence            46899999999998652   1122322 22356666666654    444569999999999999873332   2334565


Q ss_pred             Ee
Q psy6206          80 TQ   81 (83)
Q Consensus        80 ~~   81 (83)
                      ..
T Consensus       160 ~~  161 (449)
T 3qgu_A          160 VQ  161 (449)
T ss_dssp             EE
T ss_pred             Ec
Confidence            53

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=96.98  E-value=0.00084  Score=44.45  Aligned_cols=73  Identities=12%  Similarity=-0.071  Sum_probs=43.1

Q ss_pred             CHHHHHHHHH-HHHhh--ccC--CCCcchHHHHHHHHHHhhCC--CCCCeEEe--eCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           9 HPAVVKAACT-QLALL--NTN--NRFLHDNLVLCARKLASLLP--DPLSVCFF--VNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         9 ~p~i~~a~~~-~~~~~--~~~--~~~~~~~~~~la~~l~~~~p--~~~~~v~f--~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      .|.+.+++.+ +++..  +.+  .....+....+++.+....+  -..++|+|  +++|++|++.++++.+.+....+|+
T Consensus        49 ~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl  128 (412)
T 1yaa_A           49 LPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVY  128 (412)
T ss_dssp             CHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred             cHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEE
Confidence            4788888888 76531  111  11112233444444433211  02458999  9999999999988877665444566


Q ss_pred             Ee
Q psy6206          80 TQ   81 (83)
Q Consensus        80 ~~   81 (83)
                      ..
T Consensus       129 ~~  130 (412)
T 1yaa_A          129 LS  130 (412)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=96.96  E-value=0.002  Score=43.47  Aligned_cols=72  Identities=18%  Similarity=0.174  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHHHHHhh-cc---CCCCc--c---hHHHHHH-HHHHhhCCCCCCeEEe-eCChHHHHHHHHHHHHhhcC
Q psy6206           6 GHCHPAVVKAACTQLALL-NT---NNRFL--H---DNLVLCA-RKLASLLPDPLSVCFF-VNSGSEANDLALRLARVHTN   74 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~-~~---~~~~~--~---~~~~~la-~~l~~~~p~~~~~v~f-~~sGseA~e~Alk~ar~~~~   74 (83)
                      .+.+|+|++++.+++... ..   ...+.  .   +...+++ +++.+.++.  +.+.+ ++||++|++.+++..+.. |
T Consensus        55 ~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~--~~~~v~~~sGs~a~~~a~~~~~~~-G  131 (447)
T 3h7f_A           55 NFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGA--EFANVQPHSGAQANAAVLHALMSP-G  131 (447)
T ss_dssp             CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSHHHHHHHHHHHHCCT-T
T ss_pred             CCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCC--CceEEEeCCHHHHHHHHHHHhcCC-C
Confidence            345899999998887532 11   11111  1   2335566 888888743  45666 899999999999976542 3


Q ss_pred             CCceEEe
Q psy6206          75 NDDVITQ   81 (83)
Q Consensus        75 r~~ii~~   81 (83)
                      . +|++.
T Consensus       132 d-~Vl~~  137 (447)
T 3h7f_A          132 E-RLLGL  137 (447)
T ss_dssp             C-EEEEE
T ss_pred             C-EEEec
Confidence            3 45543

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=96.95  E-value=0.003  Score=42.61  Aligned_cols=65  Identities=17%  Similarity=0.015  Sum_probs=44.0

Q ss_pred             CCCHHHHHHHHHHHHhhc-cCCCCc--chHHHHHHHHHHhhCCCCCC-----eEEeeCChHHHHHHHHHHHHh
Q psy6206           7 HCHPAVVKAACTQLALLN-TNNRFL--HDNLVLCARKLASLLPDPLS-----VCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~~-~~~~~~--~~~~~~la~~l~~~~p~~~~-----~v~f~~sGseA~e~Alk~ar~   71 (83)
                      +.+|.+.+++.+.++.-. ....++  .+...++.+.+.+.++.+.+     .+.|+++|+||+..++..++.
T Consensus        53 ~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~  125 (452)
T 2dgk_A           53 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKW  125 (452)
T ss_dssp             CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHH
Confidence            456888888887775421 111222  23345677777888754433     489999999999999998764

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=96.95  E-value=0.0023  Score=42.29  Aligned_cols=67  Identities=19%  Similarity=0.124  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      |++.+++.+.++......  ..+...++.+.|.+...  .+.++|++||++|++.+++..+.-.| .+|+..
T Consensus        12 ~~v~~a~~~~~~~~~~~~--~g~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~~~~l~~~~g-d~Vl~~   78 (394)
T 1o69_A           12 GNELKYIEEVFKSNYIAP--LGEFVNRFEQSVKDYSK--SENALALNSATAALHLALRVAGVKQD-DIVLAS   78 (394)
T ss_dssp             CCHHHHHHHHHHHTTTSC--TTHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTTCCTT-CEEEEE
T ss_pred             HHHHHHHHHHHHcCCccC--CChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCCCCC-CEEEEC
Confidence            567777777775521111  12456788888888874  36899999999999999997642223 355543

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=96.91  E-value=0.00024  Score=45.81  Aligned_cols=70  Identities=16%  Similarity=0.113  Sum_probs=44.2

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCC--CCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPD--PLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+|+|.+++.+++.  +....+.++...++.+.|.+.++.  +.+.++|+++|++|++.+++..+. .|. +||..
T Consensus        15 ~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~-~gd-~vi~~   86 (366)
T 1m32_A           15 TSRTVKEAMLFDSC--TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG-PQD-KVLIV   86 (366)
T ss_dssp             CCHHHHHTTCCCCC--TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC-TTC-CEEEE
T ss_pred             CCHHHHHHHhhhhc--CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcC-CCC-eEEEE
Confidence            57889998877532  111111113456677777776652  234799999999999999997642 333 45443

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=96.77  E-value=0.0039  Score=41.40  Aligned_cols=52  Identities=23%  Similarity=0.195  Sum_probs=37.1

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+.+.++...++.+.+.+..+.  +.+++++||++|++.+++...  ....+||+.
T Consensus        59 ~~r~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~a~~~~l~~~~--~~gd~vl~~  110 (398)
T 1gc0_A           59 YSRISNPTLNLLEARMASLEGG--EAGLALASGMGAITSTLWTLL--RPGDEVLLG  110 (398)
T ss_dssp             ----CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             ccCCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh--cCCCEEEEe
Confidence            3455677888999999998864  378889999999999999762  223456654

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=96.76  E-value=0.0077  Score=39.75  Aligned_cols=71  Identities=17%  Similarity=0.085  Sum_probs=46.6

Q ss_pred             CCHHHHHHHHHHHHhhcc---CCCCc-chHHHHHHHHHHhhC--C-CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           8 CHPAVVKAACTQLALLNT---NNRFL-HDNLVLCARKLASLL--P-DPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~---~~~~~-~~~~~~la~~l~~~~--p-~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      .+|.+.+++.++++....   ...+. .....+|.+.|.+.+  + ...+.|+|+++++|+++.++++.   ....+|+.
T Consensus        47 ~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~~~---~~gd~Vl~  123 (400)
T 3asa_A           47 LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLSFF---GPNQTVAI  123 (400)
T ss_dssp             CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHHHH---CSSCEEEE
T ss_pred             CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHHHc---CCCCEEEE
Confidence            478999999999876421   12232 223456777777762  3 23568999999999999876543   33345665


Q ss_pred             e
Q psy6206          81 Q   81 (83)
Q Consensus        81 ~   81 (83)
                      .
T Consensus       124 ~  124 (400)
T 3asa_A          124 Q  124 (400)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=96.68  E-value=0.0072  Score=39.75  Aligned_cols=51  Identities=20%  Similarity=0.147  Sum_probs=37.1

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +.++++...++.+.|.+..+.+  ..++.+||+||++.+++..  .....+||..
T Consensus        47 ~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~~~~~--~~~g~~vl~~   97 (386)
T 1cs1_A           47 SRRGNPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVF--LKPGDLLVAP   97 (386)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred             eCCCCccHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHH--hCCCCEEEEe
Confidence            4556777889999999998754  4555588899999999976  2333456654

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=96.68  E-value=0.0035  Score=41.81  Aligned_cols=36  Identities=8%  Similarity=-0.165  Sum_probs=25.3

Q ss_pred             HHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206          35 VLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus        35 ~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      ..+++.+.+..  +.+.++|+|+++|+||++.+++...
T Consensus        90 ~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~  127 (444)
T 3if2_A           90 DALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG  127 (444)
T ss_dssp             HHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh
Confidence            44444443321  3345799999999999999998753

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=96.60  E-value=0.0021  Score=42.33  Aligned_cols=63  Identities=19%  Similarity=0.133  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHhhc---cCC-C-Cc-c----hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           6 GHCHPAVVKAACTQLALLN---TNN-R-FL-H----DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~---~~~-~-~~-~----~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+.+|+|++++.+++....   ... . +. .    +....+.+.+.+..+.+.+.+ +.+||++|++.+++..
T Consensus        35 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~~sGt~a~~~~~~~~  107 (417)
T 3n0l_A           35 NFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANV-QPNSGSQANQGVYAAL  107 (417)
T ss_dssp             CCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcce-EeccHHHHHHHHHHHh
Confidence            4558999999998884421   110 1 11 1    222234556777775433334 5588899999999976

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=96.56  E-value=0.0069  Score=40.84  Aligned_cols=52  Identities=15%  Similarity=0.152  Sum_probs=39.4

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ++.+.++...+|.++|.+..+  .+.+++++||++|++.+++.... .| .+||+.
T Consensus        75 y~r~~~p~~~~l~~~la~~~g--~~~~~~~~sG~~Ai~~al~~l~~-~G-d~Vi~~  126 (414)
T 3ndn_A           75 YSRYGNPTVSVFEERLRLIEG--APAAFATASGMAAVFTSLGALLG-AG-DRLVAA  126 (414)
T ss_dssp             BTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTCC-TT-CEEEEE
T ss_pred             cCCCCChHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHhC-CC-CEEEEc
Confidence            455677888999999999874  46899999999999999985522 23 356654

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=96.56  E-value=0.016  Score=38.87  Aligned_cols=53  Identities=21%  Similarity=0.310  Sum_probs=39.2

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEec
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQD   82 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~~   82 (83)
                      .+.+.++...++.++|.+..+.  +..++.+||++|++.+++..  .....+||+..
T Consensus        52 y~~~~~~~~~~l~~~la~~~g~--~~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~  104 (421)
T 2ctz_A           52 YSRIMNPTVDVLEKRLAALEGG--KAALATASGHAAQFLALTTL--AQAGDNIVSTP  104 (421)
T ss_dssp             CBTTBCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHH--CCTTCEEEECS
T ss_pred             ccCCCChHHHHHHHHHHHHhCC--CceEEecCHHHHHHHHHHHH--hCCCCEEEEeC
Confidence            3445667788999999998864  36678888999999999965  33345676643

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=96.46  E-value=0.016  Score=38.42  Aligned_cols=67  Identities=7%  Similarity=-0.068  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHH-HhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKL-ASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l-~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++.+++.+.++......  ..+...+|.+.+ .+... ..+.+.+++||++|+..+++....-.|. +||+
T Consensus        16 ~~i~~a~~~~~~~~~~~~--~~~~~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~~~~Gd-~Vi~   83 (377)
T 3ju7_A           16 IEYLDELKEIDASHIYTN--YGPINQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKKRKKGK-YALM   83 (377)
T ss_dssp             GGGHHHHHHHHHHTCCSS--SCHHHHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHSCTTCC-EEEE
T ss_pred             HHHHHHHHHHHHcCCccc--CCHHHHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcCCCCcC-EEEE
Confidence            567888888887642211  245667888999 88885 1468999999999999999865322343 4543

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=96.46  E-value=0.0035  Score=42.35  Aligned_cols=33  Identities=6%  Similarity=0.021  Sum_probs=24.7

Q ss_pred             CCeEEe--eCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          49 LSVCFF--VNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        49 ~~~v~f--~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .++|+|  +++|++|++.+.++...+....+|+..
T Consensus       117 ~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~  151 (448)
T 3meb_A          117 EGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMP  151 (448)
T ss_dssp             TTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             cCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            368999  999999999988766655444456653

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=96.42  E-value=0.0079  Score=39.43  Aligned_cols=70  Identities=17%  Similarity=0.106  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHHHHh-h-c-cC-CCC--cch---HHHHHH-HHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCce
Q psy6206           9 HPAVVKAACTQLAL-L-N-TN-NRF--LHD---NLVLCA-RKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDV   78 (83)
Q Consensus         9 ~p~i~~a~~~~~~~-~-~-~~-~~~--~~~---~~~~la-~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~i   78 (83)
                      +|++.+++.++++. . . .+ ..+  ..+   ...+++ +.+.+..+.+ ...++.+||++|++.+++.+  .....+|
T Consensus        36 ~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~-~~~i~~~sGt~a~~~~~~~~--~~~gd~V  112 (407)
T 2dkj_A           36 SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA-WANVQPHSGSQANMAVYMAL--MEPGDTL  112 (407)
T ss_dssp             CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred             CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC-cceEEecchHHHHHHHHHHh--cCCCCEE
Confidence            89999999998864 2 1 11 111  122   222222 4667776542 23366788999999999987  2333456


Q ss_pred             EEe
Q psy6206          79 ITQ   81 (83)
Q Consensus        79 i~~   81 (83)
                      +..
T Consensus       113 l~~  115 (407)
T 2dkj_A          113 MGM  115 (407)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=96.38  E-value=0.031  Score=37.14  Aligned_cols=71  Identities=11%  Similarity=-0.011  Sum_probs=43.0

Q ss_pred             CCHHHHHHHHHHHHhhcc---CCCCc-chHHHHHHHHHHhh----CCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           8 CHPAVVKAACTQLALLNT---NNRFL-HDNLVLCARKLASL----LPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~---~~~~~-~~~~~~la~~l~~~----~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      .+|.|.+++.++++....   ...+. .....+|.+.+.+.    .+...+.|+|+++++++++....+.   .....||
T Consensus        70 ~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l~~l~---~~gd~Vl  146 (432)
T 3ei9_A           70 IPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRLQVMF---GSNVTIA  146 (432)
T ss_dssp             CCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHHHHHH---CTTCCEE
T ss_pred             CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHHHHHc---CCCCEEE
Confidence            569999999999986421   11222 12223455555544    3444579999999999998743332   2334565


Q ss_pred             Ee
Q psy6206          80 TQ   81 (83)
Q Consensus        80 ~~   81 (83)
                      +.
T Consensus       147 ~~  148 (432)
T 3ei9_A          147 VQ  148 (432)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=96.32  E-value=0.0058  Score=41.03  Aligned_cols=50  Identities=20%  Similarity=0.220  Sum_probs=36.6

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +.+.++...+|.++|.++.+.  +.+++++||++|++.+++++   ....+||+.
T Consensus        62 ~r~~~p~~~~l~~~la~l~g~--~~~~~~~sG~~Ai~~~~~l~---~~gd~Vi~~  111 (400)
T 3nmy_A           62 SRTHNPTRFAYERCVAALEGG--TRAFAFASGMAATSTVMELL---DAGSHVVAM  111 (400)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTTS---CTTCEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhCC--CCEEEecCHHHHHHHHHHHc---CCCCEEEEe
Confidence            455678889999999998854  48899999999999865432   223356654

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=96.27  E-value=0.0031  Score=41.15  Aligned_cols=47  Identities=11%  Similarity=0.036  Sum_probs=34.7

Q ss_pred             HHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          34 LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        34 ~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ..++.+.|.+..+.+.++|+++++|+|+++.+++.... .|+.+|+..
T Consensus        60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~-~g~d~Vl~~  106 (356)
T 1fg7_A           60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE-PGKDAILYC  106 (356)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC-TTTCEEEEC
T ss_pred             HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhC-CCCCEEEEe
Confidence            45677777777765557899999999999999986532 343567654

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=96.25  E-value=0.0038  Score=42.01  Aligned_cols=60  Identities=12%  Similarity=0.027  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHHhhcc-C-C----CC----cchHHHHHHHHHHhhCCCCC-CeEEe-eCChHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNT-N-N----RF----LHDNLVLCARKLASLLPDPL-SVCFF-VNSGSEANDLALR   67 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~-~-~----~~----~~~~~~~la~~l~~~~p~~~-~~v~f-~~sGseA~e~Alk   67 (83)
                      -+|+|.+++.+.+..... + +    ..    ..+...+..+.|.+++..+. ..|+| +.+|||+++.+++
T Consensus        24 ~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~   95 (377)
T 3e77_A           24 LPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPL   95 (377)
T ss_dssp             CCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHH
Confidence            468999999987764311 1 1    11    12344666777777775433 47888 4899999999998

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=96.24  E-value=0.0037  Score=41.76  Aligned_cols=60  Identities=10%  Similarity=-0.026  Sum_probs=40.4

Q ss_pred             CHHHHHHHHHHHHhhcc-C-C----CC----cchHHHHHHHHHHhhCCCC-CCeEEe-eCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNT-N-N----RF----LHDNLVLCARKLASLLPDP-LSVCFF-VNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~-~-~----~~----~~~~~~~la~~l~~~~p~~-~~~v~f-~~sGseA~e~Alk~   68 (83)
                      +|+|.+++.+.+..... + +    ..    ..+...+..+.|.+++..+ ...|+| +++|||+++.+++=
T Consensus        17 ~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~   88 (361)
T 3m5u_A           17 PLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMN   88 (361)
T ss_dssp             CHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHh
Confidence            68999999887754311 1 1    11    1244566777778877543 347888 99999999999983

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=96.22  E-value=0.015  Score=39.45  Aligned_cols=52  Identities=19%  Similarity=0.135  Sum_probs=35.8

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ++.+.++...+|.++|.+..+.  +..++++||++|++.+++..  .....+||+.
T Consensus        76 y~r~~~p~~~~le~~lA~l~g~--~~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~  127 (430)
T 3ri6_A           76 YSRSSNPTVEDLEQRLKNLTGA--LGVLALGSGMAAISTAILTL--ARAGDSVVTT  127 (430)
T ss_dssp             ----CCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHH--CCTTCEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHH--hCCCCEEEEc
Confidence            3455677888999999998853  45788889999999999855  2223456553

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=96.19  E-value=0.016  Score=37.87  Aligned_cols=73  Identities=16%  Similarity=0.150  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHHHHH-hhc--cC-CC-Cc-chHHHH----HHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206           6 GHCHPAVVKAACTQLA-LLN--TN-NR-FL-HDNLVL----CARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN   75 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~-~~~--~~-~~-~~-~~~~~~----la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r   75 (83)
                      ++-+|++.+++.+++. ...  .. +. +. .+...+    +.+.+.+..+.+ ...++.+||++|++.+++...  ...
T Consensus        33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~-~~~i~~~sGt~a~~~a~~~~~--~~g  109 (405)
T 2vi8_A           33 NFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE-HANVQPHSGAQANMAVYFTVL--EHG  109 (405)
T ss_dssp             CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHHHHHHHHHHHC--CTT
T ss_pred             ccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC-ceEEEecCcHHHHHHHHHHhc--CCC
Confidence            3448999999999885 321  11 11 11 122333    345777777543 234557889999999999772  233


Q ss_pred             CceEEe
Q psy6206          76 DDVITQ   81 (83)
Q Consensus        76 ~~ii~~   81 (83)
                      .+|+..
T Consensus       110 d~Vl~~  115 (405)
T 2vi8_A          110 DTVLGM  115 (405)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            455543

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=96.17  E-value=0.0054  Score=39.81  Aligned_cols=48  Identities=10%  Similarity=0.086  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhhCCC----CCCeEEeeCChHHHHHHHHHHHH-hhcCCCceEEe
Q psy6206          34 LVLCARKLASLLPD----PLSVCFFVNSGSEANDLALRLAR-VHTNNDDVITQ   81 (83)
Q Consensus        34 ~~~la~~l~~~~p~----~~~~v~f~~sGseA~e~Alk~ar-~~~~r~~ii~~   81 (83)
                      ..++.+.+.+.+..    +.+.++|+++|+||++.+++... .+....+||..
T Consensus        40 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~   92 (385)
T 2bkw_A           40 FQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV   92 (385)
T ss_dssp             HHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence            34555666665533    23689999999999999999764 22222355544

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=96.12  E-value=0.015  Score=39.99  Aligned_cols=39  Identities=31%  Similarity=0.239  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206          34 LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        34 ~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      ..++.+.|++.++.+.+.+.|+++||||+..|++.+|.+
T Consensus       150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~  188 (515)
T 2jis_A          150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQ  188 (515)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHH
Confidence            455777788887654568999999999999999999853

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=96.12  E-value=0.019  Score=36.83  Aligned_cols=61  Identities=18%  Similarity=0.130  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHHHhhc--cCCCCc--chHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--TNNRFL--HDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~~~~~~--~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|++.+++.+.+....  .....+  .+...++.+.+.+.... +.+.+.|+++|++|++.+++..
T Consensus        16 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l   81 (362)
T 3ffr_A           16 YPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNC   81 (362)
T ss_dssp             CTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhc
Confidence            5788888888776532  111111  13446677778877743 2457999999999999999854

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=96.06  E-value=0.028  Score=37.35  Aligned_cols=50  Identities=18%  Similarity=0.150  Sum_probs=36.6

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +.++++...++.+.|.+..+.  +.+++++||+||++.++++  .-.| .+||+.
T Consensus        50 ~~~~~~~~~~lr~~la~~~g~--~~~i~~~sGt~a~~~al~~--~~~g-d~Vi~~   99 (393)
T 1n8p_A           50 SRSQNPNRENLERAVAALENA--QYGLAFSSGSATTATILQS--LPQG-SHAVSI   99 (393)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHT--SCSS-CEEEEE
T ss_pred             ecCCChhHHHHHHHHHHHhCC--CcEEEECChHHHHHHHHHH--cCCC-CEEEEe
Confidence            445667778999999999864  3788888999999999992  1223 356553

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=96.06  E-value=0.019  Score=38.29  Aligned_cols=23  Identities=9%  Similarity=0.008  Sum_probs=20.1

Q ss_pred             CCCeEEeeCChHHHHHHHHHHHH
Q psy6206          48 PLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus        48 ~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      +.+.++|+++|++|++.+++...
T Consensus       110 ~~~~v~~~~gg~~a~~~~~~~l~  132 (435)
T 3piu_A          110 DPNHLVLTAGATSANETFIFCLA  132 (435)
T ss_dssp             CGGGEEEEEHHHHHHHHHHHHHC
T ss_pred             CHHHEEEcCChHHHHHHHHHHhc
Confidence            35689999999999999999764

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=96.05  E-value=0.052  Score=35.55  Aligned_cols=61  Identities=16%  Similarity=-0.084  Sum_probs=39.8

Q ss_pred             CHHHHHHHHHHHHhhc--cCC-CCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--TNN-RFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~~~-~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|.+.+++.+.++...  +.. ....+....+++.+....+  ...+.|.++++|++|++.+++..
T Consensus        46 ~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l  111 (385)
T 1b5p_A           46 PEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI  111 (385)
T ss_dssp             CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHh
Confidence            4788999888876531  111 1123444566666654332  23468999999999999999865

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=96.04  E-value=0.001  Score=44.15  Aligned_cols=38  Identities=13%  Similarity=-0.084  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhhCCCCCCeEEeeCChHHHHH--HHHHHHHh
Q psy6206          34 LVLCARKLASLLPDPLSVCFFVNSGSEAND--LALRLARV   71 (83)
Q Consensus        34 ~~~la~~l~~~~p~~~~~v~f~~sGseA~e--~Alk~ar~   71 (83)
                      ..+|.+.|.+..+.+.+.|+++++|++++.  .+++....
T Consensus        72 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~  111 (423)
T 3ez1_A           72 LPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLH  111 (423)
T ss_dssp             CHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhc
Confidence            467888888887655679999999999997  77775443

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=96.00  E-value=0.0032  Score=42.39  Aligned_cols=60  Identities=15%  Similarity=0.045  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHHHhhc-cC---------CCCcchHHHHHHHHHHhhCCCCC-CeEEe-eCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN-TN---------NRFLHDNLVLCARKLASLLPDPL-SVCFF-VNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~-~~---------~~~~~~~~~~la~~l~~~~p~~~-~~v~f-~~sGseA~e~Alk~   68 (83)
                      +|+|.+++.+.+.... .+         +.-..+...+..+.|.+++..+. ..|+| +.+|||+++.+++=
T Consensus        39 p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~  110 (386)
T 3qm2_A           39 PAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLN  110 (386)
T ss_dssp             CHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHh
Confidence            6888888877664421 00         11112334556666777665432 46888 69999999999973

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=95.92  E-value=0.019  Score=39.25  Aligned_cols=38  Identities=16%  Similarity=0.165  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHHHHHHhh
Q psy6206          35 VLCARKLASLLPDP--LSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        35 ~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      .++.+.+.+.++.+  ...+.|+++||||+..|++.+|.+
T Consensus       135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~  174 (504)
T 2okj_A          135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYK  174 (504)
T ss_dssp             HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHH
Confidence            44556677776543  568999999999999999999853

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=95.85  E-value=0.05  Score=36.38  Aligned_cols=37  Identities=22%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          31 HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        31 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+...+|.+.|.+..+  .+.++|+++|++|++.+++..
T Consensus        74 ~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~al~~l  110 (456)
T 2ez2_A           74 SENFYHLERTVQELFG--FKHIVPTHQGRGAENLLSQLA  110 (456)
T ss_dssp             CHHHHHHHHHHHHHHC--CSEEEEESSHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHhC--CCcEEEeCCcHHHHHHHHHHh
Confidence            4556789999998884  458999999999999999876

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=95.85  E-value=0.024  Score=36.82  Aligned_cols=46  Identities=20%  Similarity=0.098  Sum_probs=32.6

Q ss_pred             HHHHHHHHHhhC-CCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          34 LVLCARKLASLL-PDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        34 ~~~la~~l~~~~-p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ..+|.+.+.+.. +.+.+.++++++|++|++.+++...  ....+||+.
T Consensus        65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--~~gd~Vl~~  111 (375)
T 3op7_A           65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--EPGDHVISL  111 (375)
T ss_dssp             CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--CTTCEEEEE
T ss_pred             hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--CCCCEEEEe
Confidence            356777777765 3345799999999999999998652  223356654

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=95.81  E-value=0.00085  Score=44.72  Aligned_cols=73  Identities=11%  Similarity=-0.028  Sum_probs=39.9

Q ss_pred             CCCCCHHH--HHHHHHHHHhhccCCCCc-----chHHHHHHHHHHhhC-CCCCCe---EEeeCChHHHHHHHHHHHHhhc
Q psy6206           5 VGHCHPAV--VKAACTQLALLNTNNRFL-----HDNLVLCARKLASLL-PDPLSV---CFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         5 lGh~~p~i--~~a~~~~~~~~~~~~~~~-----~~~~~~la~~l~~~~-p~~~~~---v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      +|+ +|.+  .+++.++++.. ....++     .+....+++.+.+.. +.+.+.   ++++++|++|++.+++.... .
T Consensus        60 ~~~-~~~~~~~~a~~~~~~~~-~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~-~  136 (430)
T 2x5f_A           60 KDG-KMFASSLDAMFNDLTPD-EIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVN-Q  136 (430)
T ss_dssp             TTE-ECCCHHHHTTBSSCCGG-GTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCC-T
T ss_pred             CCC-chhhHHHHHHHHhcCcc-cccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhC-C
Confidence            443 4555  67766665431 111222     223344444443221 333456   99999999999999996532 2


Q ss_pred             CCCceEEe
Q psy6206          74 NNDDVITQ   81 (83)
Q Consensus        74 ~r~~ii~~   81 (83)
                      | .+|+..
T Consensus       137 g-d~Vl~~  143 (430)
T 2x5f_A          137 D-DTILLP  143 (430)
T ss_dssp             T-CEEEEE
T ss_pred             C-CEEEEc
Confidence            3 356654

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=95.79  E-value=0.0032  Score=41.89  Aligned_cols=48  Identities=8%  Similarity=-0.030  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHhhCC----CCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          32 DNLVLCARKLASLLP----DPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        32 ~~~~~la~~l~~~~p----~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +....+++.+.+..+    .+.+.++++++|+|+++.+++.... .| .+|+..
T Consensus        87 ~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~-~g-d~Vl~~  138 (428)
T 1iay_A           87 EFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD-PG-DAFLVP  138 (428)
T ss_dssp             HHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC-TT-CEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCC-CC-CeEEEc
Confidence            444556666554322    3356899999999999999997642 23 356554

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=95.73  E-value=0.024  Score=37.48  Aligned_cols=38  Identities=11%  Similarity=0.062  Sum_probs=26.0

Q ss_pred             hHHHHHHHHHHhhC-CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          32 DNLVLCARKLASLL-PDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        32 ~~~~~la~~l~~~~-p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +....+++.+.... |...+.++++++|++|++.+++..
T Consensus        84 ~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l  122 (418)
T 3rq1_A           84 DFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNY  122 (418)
T ss_dssp             HHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHh
Confidence            33455666664443 222238999999999999999854

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=95.66  E-value=0.033  Score=36.56  Aligned_cols=32  Identities=13%  Similarity=0.021  Sum_probs=23.4

Q ss_pred             CCeEEe--eCChHHHHHHHHHHHHhhcC-CCceEE
Q psy6206          49 LSVCFF--VNSGSEANDLALRLARVHTN-NDDVIT   80 (83)
Q Consensus        49 ~~~v~f--~~sGseA~e~Alk~ar~~~~-r~~ii~   80 (83)
                      .+++.|  +++|+||+..+++..+.+.+ ..+|+.
T Consensus        94 ~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv  128 (401)
T 7aat_A           94 SGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYL  128 (401)
T ss_dssp             TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             cCceEEEecCcchHHHHHHHHHHHHhccCCCEEEE
Confidence            458877  99999999999997765543 234554

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=95.61  E-value=0.034  Score=35.64  Aligned_cols=58  Identities=16%  Similarity=0.056  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      -.|++.+++.+....  .....+.+...+|.+.|.+..+  .+.+++++||++|++.+++..
T Consensus        16 p~~~~~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--~~~~~~~~~gt~a~~~~~~~~   73 (347)
T 1jg8_A           16 PTEEMRKAMAQAEVG--DDVYGEDPTINELERLAAETFG--KEAALFVPSGTMGNQVSIMAH   73 (347)
T ss_dssp             CCHHHHHHHHTCCCC--CGGGTCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCCC--CcccCCChHHHHHHHHHHHHhC--CceEEEecCcHHHHHHHHHHh
Confidence            457777777543211  1111234556788888888874  458899999999999998754

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=95.51  E-value=0.012  Score=38.76  Aligned_cols=61  Identities=18%  Similarity=0.044  Sum_probs=39.5

Q ss_pred             CHHHHHHHHHHHHhh-ccCCCCc--chHHHHHHHHHHhhCCCC-CCeEEe-eCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALL-NTNNRFL--HDNLVLCARKLASLLPDP-LSVCFF-VNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~-~~~~~~~--~~~~~~la~~l~~~~p~~-~~~v~f-~~sGseA~e~Alk~a   69 (83)
                      +|++.+++.+..... .....++  .+...++.+.+.+.++.+ .+.+.| +++|+||++.+++..
T Consensus        52 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l  117 (398)
T 2fyf_A           52 RLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGL  117 (398)
T ss_dssp             CHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHT
T ss_pred             CHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHh
Confidence            577888876631111 1011111  133567888888888644 358888 999999999999865

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=95.32  E-value=0.018  Score=37.27  Aligned_cols=62  Identities=15%  Similarity=0.057  Sum_probs=40.8

Q ss_pred             CCHHHHHHHHHHHHhhc--------cCCCCc--chHHHHHHHHHHhhCCCCCC-e-EEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLN--------TNNRFL--HDNLVLCARKLASLLPDPLS-V-CFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~--------~~~~~~--~~~~~~la~~l~~~~p~~~~-~-v~f~~sGseA~e~Alk~a   69 (83)
                      -+|++.+++.+.+....        ....++  .+...++.+.+.+....+.+ . ++++++|+||++.+++..
T Consensus        15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l   88 (362)
T 2c0r_A           15 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF   88 (362)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhc
Confidence            47889999988775320        011111  22346788888887765433 5 578899999999998854

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=95.14  E-value=0.068  Score=35.19  Aligned_cols=43  Identities=16%  Similarity=-0.037  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          35 VLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        35 ~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ..+++.+.+.++. +.+.++++++|++|++.+++..   .|. +||..
T Consensus        61 ~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~---~gd-~Vl~~  104 (374)
T 2aeu_A           61 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL---KPK-KVIHY  104 (374)
T ss_dssp             HHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH---CCS-EEEEE
T ss_pred             HHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC---CCC-EEEEe
Confidence            4455555555532 1268899999999999999965   443 56654

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=95.01  E-value=0.045  Score=37.18  Aligned_cols=73  Identities=12%  Similarity=-0.033  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHhh-c----cCCCCcchHHHHHHHHHHhhCCCCCC--eEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           7 HCHPAVVKAACTQLALL-N----TNNRFLHDNLVLCARKLASLLPDPLS--VCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~-~----~~~~~~~~~~~~la~~l~~~~p~~~~--~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      ++++++.+++.++.... +    ....++.+...++.+.+.+..+.+..  +++ .+||++|++.+++...  ....+||
T Consensus        35 ~n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~~~~~~~i~-~~sGt~Ai~~al~al~--~~Gd~Vl  111 (431)
T 3ht4_A           35 SNQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQ-IISGTHAISTALFGIL--RPGDELL  111 (431)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTCSEECCBTT-SCSHHHHHHHHHHTTC--CTTCEEE
T ss_pred             HHHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCCCcccccce-eeCHHHHHHHHHHHhC--CCCCEEE
Confidence            34567777776643211 1    11234456667899999998854322  222 4599999999987431  2223566


Q ss_pred             Eec
Q psy6206          80 TQD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      +.+
T Consensus       112 ~~~  114 (431)
T 3ht4_A          112 YIT  114 (431)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            543

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=94.91  E-value=0.062  Score=37.28  Aligned_cols=65  Identities=18%  Similarity=0.071  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcc--CCCCcchHHHHHHHHHHhh----CCC-CCCeEEeeCChHHHHHHHHHH
Q psy6206           4 PVGHCHPAVVKAACTQLALLNT--NNRFLHDNLVLCARKLASL----LPD-PLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~~--~~~~~~~~~~~la~~l~~~----~p~-~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ..++.+|++++++.+++.....  +.....+....+++.+.+.    .+. +.+.++++++|++|+..+++.
T Consensus       112 ~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~  183 (533)
T 3f6t_A          112 ELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHS  183 (533)
T ss_dssp             TTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHH
T ss_pred             CCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHH
Confidence            3456678899998888865422  2222334556677777544    222 135899999999999999984

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=94.54  E-value=0.098  Score=36.10  Aligned_cols=38  Identities=16%  Similarity=0.165  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhCCCC--CCeEEeeCChHHHHHHHHHHHHhh
Q psy6206          35 VLCARKLASLLPDP--LSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        35 ~~la~~l~~~~p~~--~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      ..+++.+.+.++-+  ...+.|+++||+|+..|+..+|..
T Consensus       138 ~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~  177 (511)
T 3vp6_A          138 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYK  177 (511)
T ss_dssp             HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHH
Confidence            44566667765432  458999999999999999998864

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=94.49  E-value=0.13  Score=35.14  Aligned_cols=52  Identities=17%  Similarity=0.222  Sum_probs=37.3

Q ss_pred             CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          26 NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        26 ~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      .+.+.++...++.++|.+..+.  +..++.+||+||++.+++.... .| .+||+.
T Consensus       108 y~r~~~~~~~~l~~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~~-~G-d~Vi~~  159 (445)
T 1qgn_A          108 YGRYGNPTTVVLEEKISALEGA--ESTLLMASGMCASTVMLLALVP-AG-GHIVTT  159 (445)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHSC-SS-CEEEEE
T ss_pred             ccCCCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHhC-CC-CEEEEc
Confidence            3445677788999999998854  3677789999999999984321 24 356654

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=93.97  E-value=0.23  Score=33.49  Aligned_cols=43  Identities=12%  Similarity=0.015  Sum_probs=33.2

Q ss_pred             ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206          24 NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus        24 ~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      +.++.+.++...++.++|.++.+.  +.+++++||++|+..+++.
T Consensus        74 ~~y~r~~~p~~~~le~~lA~l~g~--~~~i~~ssGt~Ai~~al~~  116 (415)
T 2fq6_A           74 LFYGRRGTLTHFSLQQAMCELEGG--AGCVLFPCGAAAVANSILA  116 (415)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHT
T ss_pred             ccccCCCCchHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHH
Confidence            334556677788899999998754  3566679999999999983

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=93.75  E-value=0.059  Score=36.50  Aligned_cols=46  Identities=11%  Similarity=0.186  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +...++.+.+.+ .+.+ +.++|+++|++|++.+++...  ....+|+..
T Consensus        57 ~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~--~~gd~Vlv~  102 (446)
T 2x3l_A           57 EVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS--QKKGDILMA  102 (446)
T ss_dssp             SHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT--TSSSCEEEC
T ss_pred             hHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc--CCCCEEEEe
Confidence            456778888888 7543 578899999999999998652  233455543

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=93.59  E-value=0.22  Score=33.64  Aligned_cols=70  Identities=13%  Similarity=0.100  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHHHh-hcc----CCCCcchHHHHHHHHHHhhCCCCCCeEEe---eCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           8 CHPAVVKAACTQLAL-LNT----NNRFLHDNLVLCARKLASLLPDPLSVCFF---VNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~-~~~----~~~~~~~~~~~la~~l~~~~p~~~~~v~f---~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      |++++.+++.+..-. .+.    ...+......+|.+.+.+....  +...+   ++||++|+..+++...  ....+||
T Consensus        30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g~--e~alv~p~~~sGt~Ai~~al~all--~~GD~Vl  105 (409)
T 3jzl_A           30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKT--EAALVRPQIISGTHAISTVLFGIL--RPDDELL  105 (409)
T ss_dssp             HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTSCSHHHHHHHHHHHHC--CTTCEEE
T ss_pred             hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhCC--CcEEEECCCccHHHHHHHHHHHhc--CCCCEEE
Confidence            456677777664311 111    1123344456788888888854  34444   8999999999987532  2223555


Q ss_pred             Ee
Q psy6206          80 TQ   81 (83)
Q Consensus        80 ~~   81 (83)
                      +.
T Consensus       106 ~~  107 (409)
T 3jzl_A          106 YI  107 (409)
T ss_dssp             EC
T ss_pred             Ee
Confidence            43

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=93.52  E-value=0.18  Score=33.64  Aligned_cols=50  Identities=18%  Similarity=0.130  Sum_probs=33.4

Q ss_pred             CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          27 NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        27 ~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +.++++...+|.+.|.+..+.+  ..++.+||++|+..+++ .  .....+||+.
T Consensus        62 ~r~~~p~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l--~~~gd~Vl~~  111 (403)
T 3cog_A           62 SRSGNPTRNCLEKAVAALDGAK--YCLAFASGLAATVTITH-L--LKAGDQIICM  111 (403)
T ss_dssp             ----CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-T--SCTTCEEEEE
T ss_pred             cCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H--hCCCCEEEEe
Confidence            4456677788999999988543  56667799999999987 2  2233456654

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=93.46  E-value=0.16  Score=34.64  Aligned_cols=39  Identities=23%  Similarity=0.158  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhhCCCCC---------CeEEeeCChHHHHHHHHHHHHhh
Q psy6206          34 LVLCARKLASLLPDPL---------SVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        34 ~~~la~~l~~~~p~~~---------~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      ..++++.+.+.++.+.         ....|+++||+||-.|+..+|..
T Consensus       115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~  162 (475)
T 3k40_A          115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAK  162 (475)
T ss_dssp             HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHH
Confidence            3456666777764321         26889999999999999999865

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=93.44  E-value=0.21  Score=31.77  Aligned_cols=42  Identities=21%  Similarity=0.195  Sum_probs=28.4

Q ss_pred             HHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          36 LCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        36 ~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ++.+.|.+..+.  +..++.+||++|++.+++.... .| .+|+..
T Consensus         2 ~l~~~la~~~g~--~~~i~~~sG~~a~~~~~~~~~~-~g-~~v~~~   43 (331)
T 1pff_A            2 ALEGKIAKLEHA--EACAATASGMGAIAASVWTFLK-AG-DHLISD   43 (331)
T ss_dssp             HHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC-TT-CEEEEE
T ss_pred             hHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcC-CC-CEEEEc
Confidence            456677777754  3777888999999999995421 23 356554

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=93.40  E-value=0.15  Score=34.78  Aligned_cols=39  Identities=26%  Similarity=0.125  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhhCCCCC----------CeEEeeCChHHHHHHHHHHHHhh
Q psy6206          34 LVLCARKLASLLPDPL----------SVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        34 ~~~la~~l~~~~p~~~----------~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      ..++++.+.+.+.-+.          ....|+++||+|+-.|+..+|..
T Consensus       120 E~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~  168 (481)
T 4e1o_A          120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKN  168 (481)
T ss_dssp             HHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHH
Confidence            3456666666653211          25789999999999999999864

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=93.23  E-value=0.091  Score=33.73  Aligned_cols=61  Identities=15%  Similarity=0.030  Sum_probs=39.7

Q ss_pred             CCHHHHHHHHHHHHhh----c-c--CCC-Cc--chHHHHHHHHHHhhCCCC-CCeEEeeCCh-HHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALL----N-T--NNR-FL--HDNLVLCARKLASLLPDP-LSVCFFVNSG-SEANDLALRL   68 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~----~-~--~~~-~~--~~~~~~la~~l~~~~p~~-~~~v~f~~sG-seA~e~Alk~   68 (83)
                      -+|.+.+++.+.++..    . .  ... .+  .+...++.+.+.+..... .+.+.|++++ ++|++.++..
T Consensus        14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~   86 (360)
T 1w23_A           14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMN   86 (360)
T ss_dssp             CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHH
Confidence            3688999998877542    0 0  000 11  123567888888876543 3489999887 9999998863

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=93.09  E-value=0.22  Score=34.18  Aligned_cols=65  Identities=18%  Similarity=0.097  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHHHHhhcc-CCCCc--chHHHHHHHHHHhhCCCC--CC---eEEeeCChHHHHHHHHHHHHh
Q psy6206           7 HCHPAVVKAACTQLALLNT-NNRFL--HDNLVLCARKLASLLPDP--LS---VCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~~~-~~~~~--~~~~~~la~~l~~~~p~~--~~---~v~f~~sGseA~e~Alk~ar~   71 (83)
                      +-+|.+.+++.+.++.... ...++  .+...++.+.|.+.+..+  .+   ...|+++|+||+..++..++.
T Consensus        67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~  139 (502)
T 3hbx_A           67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKR  139 (502)
T ss_dssp             CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHH
Confidence            4578888888877655311 11222  233346777777776433  22   335799999999999987654

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=93.06  E-value=0.35  Score=32.66  Aligned_cols=46  Identities=15%  Similarity=0.029  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhhCCCCCCeEEeeCChHH-HHHHHHHHHHhhcCCCceEE
Q psy6206          34 LVLCARKLASLLPDPLSVCFFVNSGSE-ANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        34 ~~~la~~l~~~~p~~~~~v~f~~sGse-A~e~Alk~ar~~~~r~~ii~   80 (83)
                      ..++.+.+.+.++.+.+ ++|+++|+| ++..++..++.+.+.+.||.
T Consensus       135 ~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~  181 (456)
T 2z67_A          135 TNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIY  181 (456)
T ss_dssp             HHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             HHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            35577888888865444 999999995 66668877666534444553

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=92.55  E-value=0.35  Score=32.75  Aligned_cols=37  Identities=30%  Similarity=0.207  Sum_probs=27.8

Q ss_pred             HHHHHHHHhhCCCCC---------CeEEeeCChHHHHHHHHHHHHh
Q psy6206          35 VLCARKLASLLPDPL---------SVCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus        35 ~~la~~l~~~~p~~~---------~~v~f~~sGseA~e~Alk~ar~   71 (83)
                      .++++.+.+.++.+.         ..+.|+++||||+-.|+..+|.
T Consensus       116 ~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~  161 (486)
T 1js3_A          116 TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAART  161 (486)
T ss_dssp             HHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHH
Confidence            456666777764321         3588999999999999998875

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=92.30  E-value=0.4  Score=32.79  Aligned_cols=48  Identities=19%  Similarity=0.126  Sum_probs=34.6

Q ss_pred             CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          29 FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        29 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      ...+...++++.+.+..+.  +.++++++|++|++.++++   .....+||..
T Consensus       130 ~g~~~~~~l~~~la~~~g~--~~~i~~~sGt~al~~~l~~---~~~Gd~Vi~~  177 (464)
T 1ibj_A          130 SGNPTRDALESLLAKLDKA--DRAFCFTSGMAALSAVTHL---IKNGEEIVAG  177 (464)
T ss_dssp             TCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTT---SCTTCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHH---hCCCCEEEEE
Confidence            4456678899999888753  4888899999999988763   2333456654

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=92.17  E-value=0.7  Score=32.22  Aligned_cols=65  Identities=14%  Similarity=0.065  Sum_probs=40.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccC-CCCcchHHHHHHHHHHhh-C-----CCCCCeEEeeCChHHHHHHHHHH
Q psy6206           4 PVGHCHPAVVKAACTQLALLNTN-NRFLHDNLVLCARKLASL-L-----PDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~~~-~~~~~~~~~~la~~l~~~-~-----p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ..++..|.+++++.+++....++ .....+....+++.+.+. .     +.+.+.|+++++++|+++.+++.
T Consensus       113 ~~~~~~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~  184 (546)
T 2zy4_A          113 QLGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFES  184 (546)
T ss_dssp             TSCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHH
Confidence            34677788888888777432111 112234445556555322 1     21346899999999999999986

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=92.08  E-value=0.35  Score=33.09  Aligned_cols=62  Identities=19%  Similarity=0.195  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHHHHhhc--cCCCCc-----chHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLN--TNNRFL-----HDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~--~~~~~~-----~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      -.+++++++.+.+....  ....|.     .+....+++.+.+..  +.+.+.++++++|++|+..+++..
T Consensus       107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l  177 (500)
T 3tcm_A          107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLL  177 (500)
T ss_dssp             SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHH
Confidence            34557777777776531  112222     233345555554332  234568999999999999999865

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=91.73  E-value=0.31  Score=33.81  Aligned_cols=62  Identities=24%  Similarity=0.235  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHHHHHhhc---cC-CCCc-----chHHH-HHHHHHHhhCCCCCC---eEEeeCChHHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLN---TN-NRFL-----HDNLV-LCARKLASLLPDPLS---VCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~---~~-~~~~-----~~~~~-~la~~l~~~~p~~~~---~v~f~~sGseA~e~Alk~a   69 (83)
                      -+|.|.+|+.+.+...+   .+ ..+.     ....+ ...+++.++++.+.+   -.++.+||++|+..++...
T Consensus        66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al  140 (490)
T 2a7v_A           66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL  140 (490)
T ss_dssp             CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH
Confidence            46788888777664421   01 1111     11222 344778888865443   2467779999999999743

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=90.96  E-value=0.092  Score=34.59  Aligned_cols=72  Identities=11%  Similarity=0.009  Sum_probs=40.8

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCc-chHHHHHHHHHHhhC-CCC-----CCeEEe--eCChHHHHHHHHHHHHhhcCC-Cc
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFL-HDNLVLCARKLASLL-PDP-----LSVCFF--VNSGSEANDLALRLARVHTNN-DD   77 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~-~~~~~~la~~l~~~~-p~~-----~~~v~f--~~sGseA~e~Alk~ar~~~~r-~~   77 (83)
                      .+|.+.+++.++....  ...+. .....+|.+.+.+.. ...     .+++.+  +.+|++|++.+..+.+.+.++ .+
T Consensus        56 ~~~~v~~a~~~a~~~~--~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~  133 (409)
T 4eu1_A           56 DQPFVLECVKQATLGT--NMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNR  133 (409)
T ss_dssp             SCCCCCHHHHTCCCCS--CCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCE
T ss_pred             CCEeecHHHHhcCccc--cccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCE
Confidence            4566777877762221  11221 111234444444432 111     346755  899999999999888877654 56


Q ss_pred             eEEe
Q psy6206          78 VITQ   81 (83)
Q Consensus        78 ii~~   81 (83)
                      |+..
T Consensus       134 Vlv~  137 (409)
T 4eu1_A          134 IYGP  137 (409)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6653

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=90.91  E-value=1.1  Score=29.77  Aligned_cols=39  Identities=18%  Similarity=0.117  Sum_probs=30.8

Q ss_pred             CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          29 FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        29 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ..++...++.+.+.+..+.  +.+++++||++|+..+++..
T Consensus        59 ~~~~~~~~l~~~ia~~~g~--~~~i~~~~g~~ai~~~~~~l   97 (404)
T 1e5e_A           59 LGNPTVSNLEGKIAFLEKT--EACVATSSGMGAIAATVLTI   97 (404)
T ss_dssp             TCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHH
T ss_pred             CcChHHHHHHHHHHHHhCC--CcEEEeCChHHHHHHHHHHH
Confidence            3456667888888888754  47889999999999999854

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=90.09  E-value=0.03  Score=37.28  Aligned_cols=36  Identities=17%  Similarity=-0.008  Sum_probs=26.0

Q ss_pred             HHHHHHHHHhhCCCCCCeEEeeCChHHHH--HHHHHHH
Q psy6206          34 LVLCARKLASLLPDPLSVCFFVNSGSEAN--DLALRLA   69 (83)
Q Consensus        34 ~~~la~~l~~~~p~~~~~v~f~~sGseA~--e~Alk~a   69 (83)
                      ..+|.+.+.+..+.+.++|+++++++|++  ...++..
T Consensus        78 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l  115 (422)
T 3d6k_A           78 IADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSY  115 (422)
T ss_dssp             CHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHh
Confidence            45666777766655556899999999997  6666644

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=89.76  E-value=1.9  Score=29.50  Aligned_cols=60  Identities=12%  Similarity=0.007  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhhc------cC-CCCcchHHHHHHHHHHhhC---CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLN------TN-NRFLHDNLVLCARKLASLL---PDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~~------~~-~~~~~~~~~~la~~l~~~~---p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .++.+++.+.++...      +. .....+....+++.+.+..   +...+.+++++++++|+..+++..
T Consensus       104 ~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l  173 (498)
T 3ihj_A          104 EDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL  173 (498)
T ss_dssp             HHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH
Confidence            344566666665421      11 1112244566777776542   334579999999999999999854

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=88.66  E-value=0.65  Score=31.00  Aligned_cols=49  Identities=12%  Similarity=0.064  Sum_probs=30.2

Q ss_pred             hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          32 DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +...++.+.+.+.++.+...+.++++|+.+.|.++...+ +..+.+||..
T Consensus       108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~-~~~gd~Viv~  156 (438)
T 1wyu_A          108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR-ETGRMGVLVS  156 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH-HHTCCEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh-cCCCCEEEEc
Confidence            345678888888875443456788888855555543333 3444566653

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=88.63  E-value=1.7  Score=28.74  Aligned_cols=48  Identities=10%  Similarity=0.045  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHhhCCCC---------CCeEEeeCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          32 DNLVLCARKLASLLPDP---------LSVCFFVNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~---------~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +....+++.+.+..+..         .+.|+++++|++|++.+++.... .| .+|+..
T Consensus        82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-~g-d~Vlv~  138 (425)
T 2r2n_A           82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN-PG-DNVLLD  138 (425)
T ss_dssp             HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC-TT-CEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC-CC-CEEEEe
Confidence            45566777776543322         25899999999999999987532 23 345543

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=88.22  E-value=0.97  Score=29.84  Aligned_cols=38  Identities=18%  Similarity=0.051  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhhCCCCCCeEEeeCChHHHH--HHHHHHHHh
Q psy6206          34 LVLCARKLASLLPDPLSVCFFVNSGSEAN--DLALRLARV   71 (83)
Q Consensus        34 ~~~la~~l~~~~p~~~~~v~f~~sGseA~--e~Alk~ar~   71 (83)
                      ..+|.+.|.+.++.+.+.|++++++++++  +.+++....
T Consensus        80 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~  119 (427)
T 3ppl_A           80 IVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIF  119 (427)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhc
Confidence            34666666666655557999999999999  688875443

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=87.71  E-value=1.4  Score=29.96  Aligned_cols=69  Identities=17%  Similarity=0.097  Sum_probs=38.9

Q ss_pred             CHHHHHHHHHHHHhh-c----cCCCCcchHHHHHHHHHHhhCCCCCCeEEe---eCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           9 HPAVVKAACTQLALL-N----TNNRFLHDNLVLCARKLASLLPDPLSVCFF---VNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~-~----~~~~~~~~~~~~la~~l~~~~p~~~~~v~f---~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      +++|.+++.+..... +    ....+......+|.+++.++...  +...+   ++||++|+..++...  .....+||+
T Consensus        46 ~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g~--e~alv~p~~~sGt~A~~~al~al--l~pGD~Vl~  121 (427)
T 3hvy_A           46 QLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNT--ESAFVRPHFVNGTHAIGAALFGN--LRPNDTMMS  121 (427)
T ss_dssp             HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTC--SEEEEETTCCSHHHHHHHHHHHT--CCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhCC--CceEEeCCCCcHHHHHHHHHHHh--cCCCCEEEE
Confidence            456666665532211 1    11123334456788888888854  33444   799999999888642  222235554


Q ss_pred             e
Q psy6206          81 Q   81 (83)
Q Consensus        81 ~   81 (83)
                      .
T Consensus       122 ~  122 (427)
T 3hvy_A          122 I  122 (427)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=85.17  E-value=5.7  Score=26.92  Aligned_cols=38  Identities=13%  Similarity=-0.140  Sum_probs=26.8

Q ss_pred             cchHHHHHHHHHHhhCCCCCCeEEe--eCChHHHHHHHHHH
Q psy6206          30 LHDNLVLCARKLASLLPDPLSVCFF--VNSGSEANDLALRL   68 (83)
Q Consensus        30 ~~~~~~~la~~l~~~~p~~~~~v~f--~~sGseA~e~Alk~   68 (83)
                      ......+|.+.+.++...+. .+.|  ++||++|+..++..
T Consensus        71 ~~~~~~~Le~~lA~l~g~e~-alv~p~~~sGt~Ai~~al~a  110 (427)
T 3i16_A           71 GDIGRDSLDAVYARVFNTES-ALVRPHFVNGTHALGAALFG  110 (427)
T ss_dssp             TCHHHHHHHHHHHHHHTCSE-EEEETTCCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCcc-eEEeCCCccHHHHHHHHHHH
Confidence            33445678888888885432 2444  89999999988874

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=83.38  E-value=2.8  Score=28.55  Aligned_cols=73  Identities=18%  Similarity=0.098  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHHhhc---cCC-CC-c-ch----HHHHHHHHHHhhCCCCCCe---EEeeCChHHHHHHHHHHHHhhc
Q psy6206           7 HCHPAVVKAACTQLALLN---TNN-RF-L-HD----NLVLCARKLASLLPDPLSV---CFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~~---~~~-~~-~-~~----~~~~la~~l~~~~p~~~~~---v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      .-+|.|.+++.+.+....   .+. .+ . .+    ....+.+++.+.++.+.+.   ....+||++|+..++... .-.
T Consensus        55 ~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~al-l~p  133 (483)
T 1rv3_A           55 FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTAL-VEP  133 (483)
T ss_dssp             CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-TCT
T ss_pred             CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHh-cCC
Confidence            456888888887775431   111 11 1 12    2234557788887654432   245577888888877643 222


Q ss_pred             CCCceEEe
Q psy6206          74 NNDDVITQ   81 (83)
Q Consensus        74 ~r~~ii~~   81 (83)
                      | .+||..
T Consensus       134 G-D~Vl~~  140 (483)
T 1rv3_A          134 H-GRIMGL  140 (483)
T ss_dssp             T-CEEEEE
T ss_pred             C-CEEEEe
Confidence            3 355543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	83
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	1e-12
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	5e-12
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	2e-11
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	9e-10
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	2e-07
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	1e-06
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	2e-06
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	1e-05
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	1e-05
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	2e-04
d1o69a_	374	c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE,	0.002
d1b9ha_	384	c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid syntha	0.002
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	0.003

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score = 58.7 bits (141), Expect = 1e-12
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 2   SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
               GH HP V++A    +    +         VL   ++ +     + +  FVNSG+EA
Sbjct: 63  PAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLA--EMVNDAVPSIEMVRFVNSGTEA 120

Query: 62  NDLALRLARVHTNNDDVIT 80
               LRL R +T  D +I 
Sbjct: 121 CMAVLRLMRAYTGRDKIIK 139

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 57.3 bits (137), Expect = 5e-12
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 2   SLPVGHCHPAVVKAACTQLALLNTNNRFL------HDNLVLCARKLASLLPDPLSVCFFV 55
           S+P+G+ HPA+VK       +    NR         + +      L S+ P  +S    +
Sbjct: 64  SIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITM 123

Query: 56  NSGSEANDLALRLARVHTNN 75
             GS +N+ A +   +   +
Sbjct: 124 ACGSCSNENAFKTIFMWYRS 143

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score = 55.5 bits (132), Expect = 2e-11
 Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 2   SLPVGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
           S  +GHCHP +V         L +  +  L   +V  A +LA++ P  L     +++G+E
Sbjct: 52  SAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAE 111

Query: 61  ANDLALRLARVHTNNDDVITQDQ 83
           +N+ A+R+A++ T   +++   Q
Sbjct: 112 SNEAAIRMAKLVTGKYEIVGFAQ 134

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score = 50.9 bits (121), Expect = 9e-10
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 2   SLPVGHCHPAVVKAACTQLA-LLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSE 60
              +GH +P VV+A   Q   L+               R L ++LP  L+  F VNSG+E
Sbjct: 48  VANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTE 107

Query: 61  ANDLALRLARVHTNNDDVITQDQ 83
           AN+ AL+ AR HT     +   +
Sbjct: 108 ANEAALKFARAHTGRKKFVAAMR 130

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-07
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 2   SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEA 61
           ++  GHCHP +V A  +Q+  L   +R  ++N++    +  + L +   V    N+G EA
Sbjct: 52  AVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPM-NTGVEA 110

Query: 62  NDLALRLARVHTNN 75
            + A +LAR     
Sbjct: 111 GETACKLARKWGYT 124

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 42.1 bits (97), Expect = 1e-06
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 2/71 (2%)

Query: 5  VGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDL 64
          +    P V +A             +  D L    ++    + +     F V +G+ AN L
Sbjct: 12 IAGASPEVAQALVK--HSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANAL 69

Query: 65 ALRLARVHTNN 75
           L        N
Sbjct: 70 CLSAMTPPWGN 80

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (97), Expect = 2e-06
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 2   SLPVGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLA-SLLPDPLSVCFFVNSG 58
            L  GH HP VV A   QL  L+        ++  +     +   +  D       V +G
Sbjct: 51  VLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTG 110

Query: 59  SEANDLALRLARVHTNNDDVITQDQ 83
           SEA + A+++AR  T     I    
Sbjct: 111 SEAVENAVKIARAATKRSGTIAFSG 135

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 39.4 bits (91), Expect = 1e-05
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 2  SLPVGHCHPAVVKAACTQLALLNTNNRFLH 31
          S+  GHCHP ++ A   Q   L   +R   
Sbjct: 50 SVNQGHCHPNILNAMINQAKNLTICSRAFF 79

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 1e-05
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 2   SLPVGHCHPAVVKAACTQLALLN--TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGS 59
           +   G+ HP +  A  +Q+  ++        H   +   RKL ++ P PL   F  +SGS
Sbjct: 54  AAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGS 113

Query: 60  EANDLALRLARVHTNN 75
            A ++A+++A  +   
Sbjct: 114 VAVEVAMKMALQYWQA 129

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score = 36.1 bits (81), Expect = 2e-04
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 8  CHPAVVKAACTQLALLNTNNRFLHDNLVLCAR-KLASLLPDPLSVCFFVNSGSEANDLAL 66
           HP ++         +  +  +  D+    A   +  LL  P +   F++ G++ N +A 
Sbjct: 12 MHPKILDLM--ARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 69

Query: 67 R 67
           
Sbjct: 70 S 70

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} Length = 374

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 52 CFFVNSGSEANDLALRLARVHTNNDDVIT 80
             +NS + A  LALR+A V   +D V+ 
Sbjct: 39 ALALNSATAALHLALRVAGV-KQDDIVLA 66

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

 Score = 33.2 bits (74), Expect = 0.002
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 52 CFFVNSGSEANDLALRLARVHTNNDDVITQD 82
             V +G+ A +LAL++  V     +VI   
Sbjct: 52 ALAVTNGTHALELALQVMGV-GPGTEVIVPA 81

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 32.2 bits (72), Expect = 0.003
 Identities = 4/33 (12%), Positives = 8/33 (24%), Gaps = 2/33 (6%)

Query: 38  ARKLASLLPDPLSVCFFVNSGSEANDLALRLAR 70
             K   L           + G  A ++   +  
Sbjct: 81  KDKAKELFN--YDYIIPAHQGRGAENILFPVLL 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.94
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.9
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.9
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.88
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.86
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.83
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.79
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.69
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	98.95
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	98.7
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	98.34
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	98.14
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	97.83
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	97.55
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	97.33
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	97.15
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	96.93
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	96.57
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	96.44
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	96.28
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	96.2
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	96.19
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	95.78
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	95.78
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	95.7
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	95.69
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	95.4
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	95.23
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	95.14
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	95.13
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	95.0
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	94.91
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	94.36
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	94.26
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	94.18
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	93.95
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	93.77
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	93.24
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	93.2
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	92.9
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	92.87
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	91.36
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	91.35
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	90.83
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	90.34
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	88.29
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	88.02
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	87.86
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	87.2
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	85.44
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	85.25
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	85.05
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	83.58
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	83.24
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	82.53
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	81.36

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.94  E-value=1.2e-26  Score=156.51  Aligned_cols=83  Identities=29%  Similarity=0.492  Sum_probs=77.3

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-ccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      |++++||+||+|++|+.+|++++ +....+++++..+|+++|++.+|.++++|+|++|||||||.|||+||+++||++|+
T Consensus        51 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~  130 (431)
T d1zoda1          51 MSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIV  130 (431)
T ss_dssp             HTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             HhhhhcCCCHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCccee
Confidence            57899999999999999999998 44566788999999999999999889999999999999999999999999999999


Q ss_pred             EecC
Q psy6206          80 TQDQ   83 (83)
Q Consensus        80 ~~~~   83 (83)
                      +|+|
T Consensus       131 ~~~~  134 (431)
T d1zoda1         131 GFAQ  134 (431)
T ss_dssp             EETT
T ss_pred             eccc
Confidence            9975

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=2.8e-24  Score=143.58  Aligned_cols=83  Identities=33%  Similarity=0.393  Sum_probs=75.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVI   79 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii   79 (83)
                      |+++|||+||+|++|+.+|++++. .+..+.+++..++++++.+..|.+.++|+|++|||||||.|+|+||.+++|++||
T Consensus        47 ~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii  126 (387)
T d1vefa1          47 GVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFV  126 (387)
T ss_dssp             HTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEE
T ss_pred             HhhhhcCCcHHHHHHHHHHHHhhcccccccCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceec
Confidence            478999999999999999999973 4456778899999999999999888999999999999999999999999999999


Q ss_pred             EecC
Q psy6206          80 TQDQ   83 (83)
Q Consensus        80 ~~~~   83 (83)
                      +|++
T Consensus       127 ~~~~  130 (387)
T d1vefa1         127 AAMR  130 (387)
T ss_dssp             EETT
T ss_pred             cccc
Confidence            9875

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.6e-24  Score=144.17  Aligned_cols=83  Identities=28%  Similarity=0.346  Sum_probs=74.7

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-c-CCCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHHHhhcCCCc
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-T-NNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLARVHTNNDD   77 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~ar~~~~r~~   77 (83)
                      |++++||+||+|++|+.+|++++. . ...+.+++..+++++|.+.+|.+ .++|+|++|||||+|.|+|+||.+++|++
T Consensus        50 ~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~  129 (425)
T d1sffa_          50 AVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSG  129 (425)
T ss_dssp             HTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCE
T ss_pred             HhhcccCCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccc
Confidence            578999999999999999999973 3 24567889999999999999965 57999999999999999999999999999


Q ss_pred             eEEecC
Q psy6206          78 VITQDQ   83 (83)
Q Consensus        78 ii~~~~   83 (83)
                      ||+|+|
T Consensus       130 ii~~~~  135 (425)
T d1sffa_         130 TIAFSG  135 (425)
T ss_dssp             EEEETT
T ss_pred             eEeecC
Confidence            999975

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.88  E-value=1.9e-22  Score=135.84  Aligned_cols=81  Identities=27%  Similarity=0.304  Sum_probs=71.0

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      |++++||+||+|++|+.+|++++.. ...++.....+++++.+..|. .++|+|++|||||||.|+|+||.|++|++||+
T Consensus        62 ~~~~lGh~hp~i~~ai~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~-~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~  139 (427)
T d2gsaa_          62 GPAICGHAHPEVIEALKVAMEKGTS-FGAPCALENVLAEMVNDAVPS-IEMVRFVNSGTEACMAVLRLMRAYTGRDKIIK  139 (427)
T ss_dssp             TTTTTCBTCHHHHHHHHHHHTTCSC-CSSCCHHHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             HHHhccCCcHHHHHHHHHHHHhcCc-cccchhHHHHHHHHHHhhCCc-cccccccCCcHHHHHHHHHHHHHhcCCCeEEE
Confidence            6789999999999999999998733 234556777899999988875 78999999999999999999999999999999


Q ss_pred             ecC
Q psy6206          81 QDQ   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |++
T Consensus       140 ~~~  142 (427)
T d2gsaa_         140 FEG  142 (427)
T ss_dssp             ETT
T ss_pred             Eec
Confidence            975

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=9.9e-22  Score=132.60  Aligned_cols=83  Identities=24%  Similarity=0.340  Sum_probs=74.1

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhh-cc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc-----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALL-NT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT-----   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~-~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~-----   73 (83)
                      |++++||+||+|++|+.+|++++ +. ...+++++..++++++.+.+|.++++|+|++|||||+|.|+|+||+++     
T Consensus        53 ~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~  132 (429)
T d1s0aa_          53 WAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE  132 (429)
T ss_dssp             TTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhhcCCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccc
Confidence            57899999999999999999998 32 345778899999999999999889999999999999999999999985     


Q ss_pred             CCCceEEecC
Q psy6206          74 NNDDVITQDQ   83 (83)
Q Consensus        74 ~r~~ii~~~~   83 (83)
                      ++++||+|+|
T Consensus       133 ~~~~ii~~~~  142 (429)
T d1s0aa_         133 ARQRFLTFRN  142 (429)
T ss_dssp             CCCEEEEETT
T ss_pred             cccEEEEecC
Confidence            3568999975

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.83  E-value=4.4e-21  Score=130.31  Aligned_cols=72  Identities=24%  Similarity=0.255  Sum_probs=60.0

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cC-C----CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhh
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TN-N----RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~-~----~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      |++++||+||+|++|+.+|++... .. .    ..+.....+|+++|.+..|.++++|+|++|||||||.|||+||.|
T Consensus        63 ~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~  140 (461)
T d1ohwa_          63 SSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMW  140 (461)
T ss_dssp             HTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHH
Confidence            578999999999999999998752 11 1    122345678999999999988999999999999999999999987

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.4e-20  Score=122.86  Aligned_cols=81  Identities=26%  Similarity=0.395  Sum_probs=66.6

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhc-cCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc------
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLN-TNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT------   73 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~------   73 (83)
                      |+++|||+||+|++|+.+|++++. ....+.++....+++.+.+..  +.++|+|++|||||+|.|+|+||+++      
T Consensus        51 ~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~  128 (404)
T d2byla1          51 SAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKLARKWGYTVKGI  128 (404)
T ss_dssp             HTCTTCBTCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhhcCCCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcc--cccccccccCccccchhHHHHHHHHhhhcccc
Confidence            578999999999999999999984 334455666777888777766  45799999999999999999999885      


Q ss_pred             --CCCceEEecC
Q psy6206          74 --NNDDVITQDQ   83 (83)
Q Consensus        74 --~r~~ii~~~~   83 (83)
                        +|.+|+++++
T Consensus       129 ~~~~~~i~~~~~  140 (404)
T d2byla1         129 QKYKAKIVFAAG  140 (404)
T ss_dssp             CTTCCEEEEETT
T ss_pred             ccccccccccCC
Confidence              5667888764

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.69  E-value=1.8e-17  Score=110.63  Aligned_cols=81  Identities=30%  Similarity=0.516  Sum_probs=60.9

Q ss_pred             CccCCCCCCHHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC----
Q psy6206           1 MSLPVGHCHPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN----   75 (83)
Q Consensus         1 ~~~~lGh~~p~i~~a~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r----   75 (83)
                      |+++|||+||+|++|+.+|++++.. ...+.+.+...+++.+.+..  +.++++|++||+||++.|+|++|+++++    
T Consensus        49 ~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~  126 (404)
T d1z7da1          49 SSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLL--GYDKVLMMNTGAEANETAYKLCRKWGYEVKKI  126 (404)
T ss_dssp             HTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHhhhcCcHHHHHHHHHHHHhCCCcccccchHHHHHHHHhhhhcc--ccceeeeeccccchHHHHHHHHHHHHhhcccc
Confidence            5789999999999999999999843 33344455544544455544  3679999999999999999999988643    


Q ss_pred             ----CceEEecC
Q psy6206          76 ----DDVITQDQ   83 (83)
Q Consensus        76 ----~~ii~~~~   83 (83)
                          .+|+++++
T Consensus       127 ~~~~~~~~~~~~  138 (404)
T d1z7da1         127 PENMAKIVVCKN  138 (404)
T ss_dssp             CTTCCEEEEETT
T ss_pred             cccccccccccc
Confidence                35666653

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=98.95  E-value=1.9e-10  Score=71.91  Aligned_cols=72  Identities=19%  Similarity=0.176  Sum_probs=54.8

Q ss_pred             ccCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC
Q psy6206           2 SLPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN   75 (83)
Q Consensus         2 ~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r   75 (83)
                      +.|.++.||+|++|+.++... +......++...++.+++++.+.. ...++|++||+|||+.|++.++...++
T Consensus         9 s~n~~g~~P~v~~A~~~a~~~-~~~~~~~~~~~~~l~~~la~~~g~-~~~v~f~~sGt~An~~a~~~~~~~~~~   80 (345)
T d1v72a1           9 SDNIAGASPEVAQALVKHSSG-QAGPYGTDELTAQVKRKFCEIFER-DVEVFLVPTGTAANALCLSAMTPPWGN   80 (345)
T ss_dssp             CGGGCCCCHHHHHHHHHTTSS-CCCSTTCSHHHHHHHHHHHHHHTS-CCEEEEESCHHHHHHHHHHTSCCTTEE
T ss_pred             CCCCCCCCHHHHHHHHHHhcc-CccccCCCHHHHHHHHHHHHHHCC-CcEEEECCchHHHHHHHHHHHHhcCCc
Confidence            456788899999999875432 222223567778999999999864 347999999999999999988776544

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=98.70  E-value=1.8e-08  Score=61.79  Aligned_cols=65  Identities=20%  Similarity=0.211  Sum_probs=49.6

Q ss_pred             CCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206           8 CHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      .||+|++|+.++.... .......+...++.+++.+.++.+.+.|+|+++||||+..|++......
T Consensus        12 ~~P~v~eAl~~~~~~~-~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~   76 (340)
T d1svva_          12 MHPKILDLMARDNMTQ-HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPW   76 (340)
T ss_dssp             CCHHHHHHHHHHTTCC-CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTT
T ss_pred             CCHHHHHHHHHHhhcC-CCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhc
Confidence            4899999998865432 1122235566789999999998777799999999999999998765543

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=1.4e-06  Score=57.25  Aligned_cols=62  Identities=21%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             CCCC-CHHHHHHHHHHHHhhccCCCC------cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           5 VGHC-HPAVVKAACTQLALLNTNNRF------LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         5 lGh~-~p~i~~a~~~~~~~~~~~~~~------~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ||++ ||+|++++.+++++....+..      ..+...+|.++|.+.+  +.+.+++++||++|+..+++.
T Consensus        56 LGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~--g~e~al~~~SG~~An~~~i~~  124 (401)
T d1fc4a_          56 LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL--GMEDAILYSSCFDANGGLFET  124 (401)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH--TCSEEEEESCHHHHHHTTHHH
T ss_pred             ccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh--cCCceEEecchhhhhHHHHHH
Confidence            6876 999999999999986322211      2466688999999988  467899999999999999974

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.14  E-value=2.5e-06  Score=52.76  Aligned_cols=61  Identities=15%  Similarity=0.048  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      +|++++|+.+....-..  ..+.+...+|.+.|+++++  .+.++|++||++|++.|++..+...
T Consensus        13 ~p~v~~A~~~a~~g~~~--yg~~p~~~~le~~lA~~~G--~~~~~~~~sGt~A~~~al~a~~~~g   73 (343)
T d1m6sa_          13 TEEMRKAMAQAEVGDDV--YGEDPTINELERLAAETFG--KEAALFVPSGTMGNQVSIMAHTQRG   73 (343)
T ss_dssp             CHHHHHHHHTCCCCCGG--GTCCHHHHHHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHCCTT
T ss_pred             CHHHHHHHHhhhcCCcc--cCCCHHHHHHHHHHHHHHC--CCeEEEeCCHHHHHHHHHHHHhccC
Confidence            69999998654211111  1234666889999999984  5689999999999999999877653

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=97.83  E-value=1.3e-05  Score=52.82  Aligned_cols=41  Identities=12%  Similarity=0.070  Sum_probs=35.5

Q ss_pred             chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206          31 HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus        31 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      ++...+|.+++.+++  +.++++|++|||+|++.|+|+++.+.
T Consensus        74 ~~~~~~le~~~a~l~--g~~~~~~~~sGt~A~~~a~~~~~~~g  114 (465)
T d1ax4a_          74 SRNYYDLKDKAKELF--NYDYIIPAHQGRGAENILFPVLLKYK  114 (465)
T ss_dssp             CHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHH--CCCEEEECCCcHHHHHHHHHHHHHHH
Confidence            455578999999998  46899999999999999999998764

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=0.00036  Score=45.23  Aligned_cols=62  Identities=19%  Similarity=0.166  Sum_probs=49.2

Q ss_pred             CCC-CCHHHHHHHHHHHHhhcc---CCC---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           5 VGH-CHPAVVKAACTQLALLNT---NNR---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         5 lGh-~~p~i~~a~~~~~~~~~~---~~~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ||. .||++++++.+++++..+   .+.   ...+...+|.++|.+.+  +.+.+.+++||..|+..++..
T Consensus        49 LGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~--g~e~al~~~SG~~an~~~i~a  117 (383)
T d1bs0a_          49 LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL--GYSRALLFISGFAANQAVIAA  117 (383)
T ss_dssp             TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH--TCSEEEEESCHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc--CCCceEEecccchhhHHHHHh
Confidence            565 499999999999998621   221   23577789999999999  467899999999999998864

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=97.33  E-value=0.00049  Score=43.67  Aligned_cols=76  Identities=11%  Similarity=0.104  Sum_probs=49.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhhc-cCCC------CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCC
Q psy6206           4 PVGHCHPAVVKAACTQLALLN-TNNR------FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNND   76 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~-~~~~------~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~   76 (83)
                      ..|-..+.+.+++.+.++... ....      ...+...++.+.|.+.++.+.++|.|+++|||++..++...+...|. 
T Consensus        15 ~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~-   93 (381)
T d1elua_          15 GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGD-   93 (381)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTC-
T ss_pred             cccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhcCCc-
Confidence            345556678999999887642 1111      11233455677788888766678999999999999988754333343 


Q ss_pred             ceEE
Q psy6206          77 DVIT   80 (83)
Q Consensus        77 ~ii~   80 (83)
                      +|+.
T Consensus        94 ~i~~   97 (381)
T d1elua_          94 EILL   97 (381)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            4443

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00035  Score=45.89  Aligned_cols=41  Identities=7%  Similarity=0.095  Sum_probs=35.0

Q ss_pred             chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhc
Q psy6206          31 HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHT   73 (83)
Q Consensus        31 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~   73 (83)
                      ++...+|.+++.+++  +.+.++|++||++|++.|+++..++.
T Consensus        73 ~~~~~~le~~~a~l~--G~~~~~~~~sGt~A~~~a~~~~~~~g  113 (467)
T d2v1pa1          73 SRSYYALAESVKNIF--GYQYTIPTHQGRGAEQIYIPVLIKKR  113 (467)
T ss_dssp             CHHHHHHHHHHHHHT--CCSEEEEECSSTTTHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHH--CCCEEEECCCCHHHHHHHHHHHhhcc
Confidence            455678999999999  46789999999999999999887753

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.001  Score=42.11  Aligned_cols=47  Identities=11%  Similarity=0.127  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhC----CCCCCeEEeeCChHHHHHHHHH-HHHhhcCCCceEEe
Q psy6206          35 VLCARKLASLL----PDPLSVCFFVNSGSEANDLALR-LARVHTNNDDVITQ   81 (83)
Q Consensus        35 ~~la~~l~~~~----p~~~~~v~f~~sGseA~e~Alk-~ar~~~~r~~ii~~   81 (83)
                      .++.+.+.+++    |.+.+.++|+.|||+++|.+++ +.+.+....+++..
T Consensus        39 ~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~   90 (382)
T d2bkwa1          39 QRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV   90 (382)
T ss_dssp             HHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred             HHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEE
Confidence            34444444444    4456679999999999999998 44444322345443

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=96.57  E-value=0.0013  Score=41.55  Aligned_cols=58  Identities=16%  Similarity=0.118  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchH-HHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDN-LVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~-~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|.+++|+.+.++..+   .|+.+. ..+|.+.+++...-+.++|+++++|+|++..+++..
T Consensus        40 p~~i~~al~~~l~~~~---~Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l   98 (368)
T d1v2da_          40 PPFLLEAVRRALGRQD---QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL   98 (368)
T ss_dssp             CHHHHHHHHHHTTTSC---SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccc---CCCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhcc
Confidence            3679999988776542   222211 235556666655555679999999999999988753

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.0074  Score=38.23  Aligned_cols=77  Identities=16%  Similarity=0.232  Sum_probs=50.5

Q ss_pred             CCCCCHHHHHHHHHHHHhhcc---CCCCc-------chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh--h
Q psy6206           5 VGHCHPAVVKAACTQLALLNT---NNRFL-------HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV--H   72 (83)
Q Consensus         5 lGh~~p~i~~a~~~~~~~~~~---~~~~~-------~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~--~   72 (83)
                      .|--+|.+++++.+.+.....   +....       .+...++.+++.+.++.+.+.|.|++++|+++..++.....  .
T Consensus        11 ~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~   90 (391)
T d1p3wa_          11 TTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQ   90 (391)
T ss_dssp             CCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHG
T ss_pred             ccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhc
Confidence            345689999999887754311   11111       23345567778888877778999999999999988875543  2


Q ss_pred             cCCCceEEe
Q psy6206          73 TNNDDVITQ   81 (83)
Q Consensus        73 ~~r~~ii~~   81 (83)
                      .....||+.
T Consensus        91 ~~gd~Vv~~   99 (391)
T d1p3wa_          91 KKGKHIITS   99 (391)
T ss_dssp             GGCCEEEEE
T ss_pred             CCCCEEEEe
Confidence            223456554

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.28  E-value=0.034  Score=34.82  Aligned_cols=64  Identities=14%  Similarity=0.103  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHHHHHhhcc-C-CCC-----cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           6 GHCHPAVVKAACTQLALLNT-N-NRF-----LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~~-~-~~~-----~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +.-.+.+.+++.+.++.... + +..     ..+...+..+++.++++.+.+.|.|++++||++..++...
T Consensus        11 ~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~   81 (376)
T d1eg5a_          11 TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTV   81 (376)
T ss_dssp             CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcc
Confidence            45578899999998876521 1 111     1223345567778888776779999999999999988743

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=96.20  E-value=0.0039  Score=39.57  Aligned_cols=64  Identities=17%  Similarity=0.124  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCC-CceE
Q psy6206          11 AVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNN-DDVI   79 (83)
Q Consensus        11 ~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r-~~ii   79 (83)
                      +-.+++.+.++.....   ..+...+|.++|++.+  +.+.+.+++|||.|+..|++......|+ ..||
T Consensus        13 ~~~~~v~~~l~~~~~~---~G~~v~~fE~~~~~~~--g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi   77 (371)
T d2fnua1          13 EDKKAVLEVLNSKQLT---QGKRSLLFEEALCEFL--GVKHALVFNSATSALLTLYRNFSEFSADRNEII   77 (371)
T ss_dssp             HHHHHHHHHHTSSCCS---SSHHHHHHHHHHHHHH--TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEE
T ss_pred             HHHHHHHHHHcCCCcc---CCHHHHHHHHHHHHHH--CcCeEEEEecHHHHHHHHHHHhcccCCCCCeee
Confidence            3455666666543111   1356678889999999  4568999999999999999976555444 3455

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.19  E-value=0.015  Score=36.39  Aligned_cols=55  Identities=15%  Similarity=-0.037  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++-.+++.+.++......   .+...+|.++|++.+.  .+.+.+++|||.|+..|++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~---G~~v~~~E~~la~~~g--~~~ai~~~sgt~Al~~al~al   66 (376)
T d1mdoa_          12 AEELAAVKTVLDSGWITT---GPKNQELEAAFCRLTG--NQYAVAVSSATAGMHIALMAL   66 (376)
T ss_dssp             HHHHHHHHHHHHHTCCSS---SHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCcC---CHHHHHHHHHHHHHHC--cCeEEEeCCHHHHHHHHHHHh
Confidence            445567777766542211   3456788899999984  468999999999999999853

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.78  E-value=0.012  Score=36.53  Aligned_cols=61  Identities=13%  Similarity=0.025  Sum_probs=37.6

Q ss_pred             CCCCHHHHHHHHHHHHhhcc-----C---CCCcc-hHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           6 GHCHPAVVKAACTQLALLNT-----N---NRFLH-DNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~~-----~---~~~~~-~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      |.-.|+..+|+.+..+....     .   ..... +....+.+++.+.++  .+.+.++++|++|+..++..
T Consensus        12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g--~e~~~~t~g~t~a~~~~~~a   81 (364)
T d2e7ja1          12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG--CDVARVTNGAREAKFAVMHS   81 (364)
T ss_dssp             CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT--SSEEEEESSHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhC--cCEEEEECcHHHHHHHHHHH
Confidence            45567888888764432210     0   01111 234557788888884  57899999999999999974

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0084  Score=37.76  Aligned_cols=59  Identities=14%  Similarity=0.106  Sum_probs=37.1

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCC-eEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLS-VCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~-~v~f~~sGseA~e~Alk~a   69 (83)
                      +|+|.+++....  .+.-+.-+.+.+.++.+.|.+++..+.+ .|+|+.|||+++++++...
T Consensus        31 ~~~Vl~am~~~~--i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l   90 (388)
T d1h0ca_          31 PPRIMAAGGLQM--IGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNV   90 (388)
T ss_dssp             CHHHHHHHTCCC--CCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH
T ss_pred             CHHHHHHhCcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHh
Confidence            567766653211  1111112234567778888888754333 6899999999999999854

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.70  E-value=0.021  Score=35.89  Aligned_cols=54  Identities=19%  Similarity=0.090  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHH
Q psy6206          13 VKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus        13 ~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar   70 (83)
                      .+++.+.++.....+  .-+...+|.+.+++.+  +...+.+++|||.|+..|++...
T Consensus         4 ~~~~~~~l~~~~~~~--~G~~~~~fE~~~~~~~--~~~~~~~~~SgT~Al~lal~~l~   57 (374)
T d1o69a_           4 LKYIEEVFKSNYIAP--LGEFVNRFEQSVKDYS--KSENALALNSATAALHLALRVAG   57 (374)
T ss_dssp             HHHHHHHHHHTTTSC--TTHHHHHHHHHHHHHH--CCSEEEEESCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCcCC--CCHHHHHHHHHHHHHH--CcCeEEEeCCHHHHHHHHHHHcC
Confidence            466777776642211  1245678888899988  45689999999999999998653

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=95.69  E-value=0.036  Score=35.29  Aligned_cols=57  Identities=21%  Similarity=0.145  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          10 PAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        10 p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+-.+++.+.++..... ....+...++.+++.+.+  +...+.+++|||.|++.|++..
T Consensus        13 ~~~~~~~~~~l~~g~~~-~~~g~~v~~fE~~~a~~~--g~~~~v~~~SGt~Al~lal~~l   69 (384)
T d1b9ha_          13 DAERNGLVRALEQGQWW-RMGGDEVNSFEREFAAHH--GAAHALAVTNGTHALELALQVM   69 (384)
T ss_dssp             HHHHHHHHHHHHTSCCB-TTTCSHHHHHHHHHHHHT--TCSEEEEESCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCee-ecCCHHHHHHHHHHHHHH--CcCeEEEeCCHHHHHHHHHHHc
Confidence            44567777877764210 111356778889999999  4568999999999999999853

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=95.40  E-value=0.0058  Score=38.48  Aligned_cols=59  Identities=12%  Similarity=0.055  Sum_probs=37.2

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +|+|++|+.+..  .+..+.-+.+.+.++.+.|.+++..+ ...++|+.|||+++|+++.-.
T Consensus        29 ~~~V~~Am~~~~--~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l   88 (388)
T d2ch1a1          29 SKRVLTAMTNTV--LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL   88 (388)
T ss_dssp             CHHHHHHTTSCC--CCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH
T ss_pred             CHHHHHHhCcCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHh
Confidence            678877753211  11112222355667777788776533 446788889999999988754

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=95.23  E-value=0.0087  Score=38.00  Aligned_cols=58  Identities=16%  Similarity=0.185  Sum_probs=36.4

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      +|+|.+|+.++.  +++-+....+...+..+.|.+++..+.+-++|+.|||+++|+++.-
T Consensus        12 ~~~V~~am~~~~--~~hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~n   69 (348)
T d1iuga_          12 HPKALEALARPQ--LHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKN   69 (348)
T ss_dssp             CHHHHHHHHSCC--CCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHH
T ss_pred             CHHHHHHhcCCC--CCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHh
Confidence            577777764422  1111112234456666667777655556788899999999999873

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.14  E-value=0.16  Score=32.73  Aligned_cols=59  Identities=22%  Similarity=0.204  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHHHHHhhcc---CCC---CcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           8 CHPAVVKAACTQLALLNT---NNR---FLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~---~~~---~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .||+++++..+.+++...   .+.   ..++...+|.++|.+.+  +.+...+.+||..|+-.++..
T Consensus        60 ~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~--g~e~all~~sG~~An~~~i~~  124 (396)
T d2bwna1          60 QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH--QKEAALVFSSAYNANDATLST  124 (396)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT--TCSEEEEESCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHh--CCCceeeeecchHHHHHHHHH
Confidence            589999999999998622   122   23466789999999999  457888999999999998874

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.13  E-value=0.0028  Score=39.55  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHhhCCCCCCe--EEeeCChHHHHHHHHH
Q psy6206          32 DNLVLCARKLASLLPDPLSV--CFFVNSGSEANDLALR   67 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~~~~--v~f~~sGseA~e~Alk   67 (83)
                      +.+.+..++|.+++..+.+.  ++|+.|||++++.++.
T Consensus        33 ~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~   70 (361)
T d1m32a_          33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLG   70 (361)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHH
Confidence            44567777777777544443  8899999999999886

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=95.00  E-value=0.0089  Score=37.32  Aligned_cols=58  Identities=12%  Similarity=0.070  Sum_probs=36.0

Q ss_pred             CHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~   68 (83)
                      +|+|.+|+...  .++..+.-+.+...+..+.|.+++.. +...++|+.|||++++.++.-
T Consensus        30 ~~~Vl~am~~~--~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~   88 (377)
T d1vjoa_          30 HPSVLQAMNVS--PVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN   88 (377)
T ss_dssp             CHHHHHHHSSC--CCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH
T ss_pred             CHHHHHHhCcC--CCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHh
Confidence            56676665321  11211222345567777777777643 244789999999999998864

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=94.91  E-value=0.11  Score=32.58  Aligned_cols=65  Identities=15%  Similarity=-0.025  Sum_probs=47.2

Q ss_pred             CCCCCCHHHHHHHHHHHHhhcc-C------CCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           4 PVGHCHPAVVKAACTQLALLNT-N------NRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         4 ~lGh~~p~i~~a~~~~~~~~~~-~------~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      ..|--...+.+++.+.+..... .      .....+...++.+++.+++..+.+.+.|+.++|++....+..
T Consensus        35 s~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~  106 (404)
T d1qz9a_          35 SLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSA  106 (404)
T ss_dssp             TSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhh
Confidence            4455667899999888865311 0      111234566788889999988888999999999999877663

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=94.36  E-value=0.065  Score=33.27  Aligned_cols=59  Identities=15%  Similarity=0.158  Sum_probs=35.1

Q ss_pred             CHHHHHHHHHHHHhhc-c------CC---CCcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN-T------NN---RFLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~-~------~~---~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk   67 (83)
                      .|+|.++|.+++.... .      .+   ..+.+.+.+..+.|.+++..+ ...++|+++++++...|+.
T Consensus        15 p~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~   84 (361)
T d2c0ra1          15 PLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIP   84 (361)
T ss_dssp             CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHH
Confidence            4788999988764421 0      01   112345567778888887543 2378887776666554443

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=94.26  E-value=0.059  Score=32.96  Aligned_cols=58  Identities=19%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             CHHHHHHHHHHHHhhcc-C------CC---CcchHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNT-N------NR---FLHDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLAL   66 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~-~------~~---~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Al   66 (83)
                      +|+|.+++.+++..... +      +.   -+.+.+.+..+.|.+++... ...|+|+++++++...++
T Consensus        13 p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~   81 (360)
T d1bjna_          13 PAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAV   81 (360)
T ss_dssp             CHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhh
Confidence            68899999998754311 0      11   01233566777777777543 337888877766665554

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=94.18  E-value=0.14  Score=31.46  Aligned_cols=62  Identities=16%  Similarity=0.153  Sum_probs=37.8

Q ss_pred             CHHHHHHHHHHHHhhccC-------CC---CcchHHHHHHHHHHhhCCCCCC-eEEeeCChHHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNTN-------NR---FLHDNLVLCARKLASLLPDPLS-VCFFVNSGSEANDLALRLAR   70 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~~-------~~---~~~~~~~~la~~l~~~~p~~~~-~v~f~~sGseA~e~Alk~ar   70 (83)
                      +|+|.+++.+++-.....       +.   -..+...+..+.|.+++..+.+ .++|+++++++...+.....
T Consensus        15 p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~   87 (360)
T d1w23a_          15 PKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNL   87 (360)
T ss_dssp             CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhh
Confidence            689999999977542100       10   1123456677777777754334 57888877777665555433

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.4  Score=30.28  Aligned_cols=74  Identities=11%  Similarity=0.071  Sum_probs=48.2

Q ss_pred             CCHHHHHHHHHHHHhhcc-CC--CCc-----chHHHHHHHHHHhhCCC-CCCeEEeeCChHHHHHHHHHHHH--hhcCCC
Q psy6206           8 CHPAVVKAACTQLALLNT-NN--RFL-----HDNLVLCARKLASLLPD-PLSVCFFVNSGSEANDLALRLAR--VHTNND   76 (83)
Q Consensus         8 ~~p~i~~a~~~~~~~~~~-~~--~~~-----~~~~~~la~~l~~~~p~-~~~~v~f~~sGseA~e~Alk~ar--~~~~r~   76 (83)
                      -.+.+.+++.+.++.... +.  ...     .+...+..+.+.+.+.. ..+.+.|+.+.||++...++...  .+....
T Consensus        34 ~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~  113 (405)
T d1jf9a_          34 KPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGD  113 (405)
T ss_dssp             CCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTC
T ss_pred             CCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCC
Confidence            467899999998876521 11  111     23355667788888863 34689999999999998887422  233344


Q ss_pred             ceEEe
Q psy6206          77 DVITQ   81 (83)
Q Consensus        77 ~ii~~   81 (83)
                      .||+.
T Consensus       114 ~il~~  118 (405)
T d1jf9a_         114 NIIIS  118 (405)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            56553

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=93.77  E-value=0.19  Score=31.59  Aligned_cols=60  Identities=8%  Similarity=-0.144  Sum_probs=39.8

Q ss_pred             CHHHHHHHHHHHHhhcc-CCCCcchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLNT-NNRFLHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .|.|++|+.+.++.... +.....+....+++.+.+..  +-..+.|+.++++++++..+++.
T Consensus        46 p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~  108 (394)
T d1c7na_          46 PPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVRE  108 (394)
T ss_dssp             CHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhcc
Confidence            48899999998876421 11112233455666655442  23356899999999999999875

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=93.24  E-value=0.068  Score=34.99  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=31.4

Q ss_pred             chHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHH
Q psy6206          31 HDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        31 ~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++...+|.+++.+++  +.+.+.|++||+.|+..+++.-
T Consensus        74 dpt~~~lE~~~a~l~--G~e~al~~~SGt~An~~a~~~l  110 (456)
T d1c7ga_          74 SENFYHLEKTVKELF--GFKHIVPTHQGRGAENLLSQLA  110 (456)
T ss_dssp             CHHHHHHHHHHHHHH--CCSEEEEESSHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHh--CCCeEEECCCHHHHHHHHHHHh
Confidence            456688999999999  5678999999999999999853

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.33  Score=29.91  Aligned_cols=60  Identities=12%  Similarity=-0.060  Sum_probs=39.6

Q ss_pred             CHHHHHHHHHHHHhh-c-cCCCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALL-N-TNNRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~-~-~~~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .|.|.+++.+.+... + +......+....+++.+.+..+  -..+.|+.++++++++..++..
T Consensus        14 p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~   77 (361)
T d1d2fa_          14 APCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ   77 (361)
T ss_dssp             CHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhh
Confidence            488999998887653 1 1111112445667777766543  2346899999999999887764

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.21  Score=32.50  Aligned_cols=66  Identities=17%  Similarity=0.021  Sum_probs=43.5

Q ss_pred             CCCHHHHHHHHHHHHhh-ccCCCCc--chHHHHHHHHHHhhCC--CCC---CeEEeeCChHHHHHHHHHHHHhh
Q psy6206           7 HCHPAVVKAACTQLALL-NTNNRFL--HDNLVLCARKLASLLP--DPL---SVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus         7 h~~p~i~~a~~~~~~~~-~~~~~~~--~~~~~~la~~l~~~~p--~~~---~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      +-+|++.+.+.+.+++- .....+|  ++...++.+.|.+++.  .+.   .--.|+++||||+-.|+..||..
T Consensus        65 ~~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~  138 (450)
T d1pmma_          65 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR  138 (450)
T ss_dssp             CCCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHH
Confidence            44688877777766542 1112233  3445667778888764  221   12489999999999999999864

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=92.87  E-value=0.17  Score=32.52  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=30.7

Q ss_pred             cchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHh
Q psy6206          30 LHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARV   71 (83)
Q Consensus        30 ~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~   71 (83)
                      +..+..++.+++.+.++  .++++|+.+||.+...|+-.+-.
T Consensus        64 ~~~~i~eae~~~A~~~g--a~~a~f~~~Gtt~~n~a~i~a~~  103 (462)
T d1c4ka2          64 HEGPAVAAEKHAARVYN--ADKTYFVLGGSSNANNTVTSALV  103 (462)
T ss_dssp             TBTHHHHHHHHHHHHTT--CSEEEEESSHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhC--CCeEEEECCchHHHHHHHHHHhc
Confidence            34567788888888884  57999999999988888755443

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=91.36  E-value=0.2  Score=31.48  Aligned_cols=38  Identities=18%  Similarity=0.006  Sum_probs=27.3

Q ss_pred             hHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206          32 DNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus        32 ~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      +....+++.+.+..+  -+.+.|++++++++++..+++..
T Consensus        75 ~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l  114 (403)
T d1wsta1          75 PLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVF  114 (403)
T ss_dssp             HHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHH
Confidence            334567777765432  34579999999999999988853

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=91.35  E-value=0.21  Score=30.79  Aligned_cols=61  Identities=18%  Similarity=0.129  Sum_probs=39.1

Q ss_pred             cCCCCCCHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHH
Q psy6206           3 LPVGHCHPAVVKAACTQLALLNTNNRFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         3 ~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      +++|- .|.+.+++.+.++.+..   |+.+...+|.+.+++...-+.+.|..+++.+++....+.
T Consensus        32 np~~~-p~~~~~a~~~~~~~~~~---Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~   92 (355)
T d1lc5a_          32 NPLGM-PVSVKRALIDNLDCIER---YPDADYFHLHQALARHHQVPASWILAGNGETESIFTVAS   92 (355)
T ss_dssp             CTTCC-CHHHHHHHHHTGGGGGS---CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHH
T ss_pred             CCCCC-CHHHHHHHHHHHHHhcc---CCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHh
Confidence            45664 58899999887766532   332222356666666665445689888888887776554

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=90.83  E-value=0.75  Score=28.57  Aligned_cols=61  Identities=16%  Similarity=-0.084  Sum_probs=39.8

Q ss_pred             CHHHHHHHHHHHHhhc--cC-CCCcchHHHHHHHHHHhhCC--CCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--TN-NRFLHDNLVLCARKLASLLP--DPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .|+|.+++.+.++...  +. .....+....+++.+.+..+  -..+.|+.++++++++..+++..
T Consensus        46 p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l  111 (382)
T d1b5pa_          46 PEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI  111 (382)
T ss_dssp             CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHh
Confidence            3689999998887631  11 11122344566666655443  23468999999999999988743

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=90.34  E-value=0.64  Score=29.10  Aligned_cols=60  Identities=15%  Similarity=-0.089  Sum_probs=38.7

Q ss_pred             CHHHHHHHHHHHHhhc--cCCCC-cchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--TNNRF-LHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~~~~~-~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      .|.|++++.+.++...  +.... ..+....+++.+.+..  +-..+.|.+++++++++..+++.
T Consensus        45 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~  109 (388)
T d1j32a_          45 PKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLA  109 (388)
T ss_dssp             CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHH
Confidence            4778999998887641  11111 1233455666665443  23346899999999999998864

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=88.29  E-value=0.82  Score=28.76  Aligned_cols=61  Identities=8%  Similarity=0.025  Sum_probs=39.8

Q ss_pred             CHHHHHHHHHHHHhhc-cCCCC-----cchHHHHHHHHHHhhCCC--C-CCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN-TNNRF-----LHDNLVLCARKLASLLPD--P-LSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~-~~~~~-----~~~~~~~la~~l~~~~p~--~-~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+.+.+++.+.++... ....|     ..+....+++.+.+..+.  . .++|+.++++++|+..++...
T Consensus        41 p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l  110 (418)
T d2r5ea1          41 PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH  110 (418)
T ss_dssp             CHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhc
Confidence            3568899988886531 11122     123446677777765432  2 368999999999999988753

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.02  E-value=1.7  Score=26.69  Aligned_cols=59  Identities=19%  Similarity=0.016  Sum_probs=37.6

Q ss_pred             CHHHHHHHHHHHHhhc--cC-CCCcchHHHHHHHHHHhhC---CCCCCeEEeeCChHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--TN-NRFLHDNLVLCARKLASLL---PDPLSVCFFVNSGSEANDLALR   67 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~~-~~~~~~~~~~la~~l~~~~---p~~~~~v~f~~sGseA~e~Alk   67 (83)
                      +|.|.+++.+.++...  +. .....+....+++.+.+..   ....+.|.+++++++++..++.
T Consensus        40 p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~  104 (388)
T d1gdea_          40 PQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLS  104 (388)
T ss_dssp             CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHT
T ss_pred             CHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHH
Confidence            5778899988887631  11 1112234456666665432   1234579999999999988776

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=87.86  E-value=1.7  Score=26.93  Aligned_cols=61  Identities=13%  Similarity=-0.102  Sum_probs=38.8

Q ss_pred             CHHHHHHHHHHHHhhc--c-CCCCcchHHHHHHHHHHhhCCC--CC-CeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--T-NNRFLHDNLVLCARKLASLLPD--PL-SVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~-~~~~~~~~~~~la~~l~~~~p~--~~-~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++.+.+++.+.++...  + ......+....+++.+.+..+.  .. +.++.++++++++..++...
T Consensus        41 p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l  107 (382)
T d1u08a_          41 PRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL  107 (382)
T ss_dssp             CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhc
Confidence            3578888888887642  1 1111224445677777655332  22 35999999999999988743

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=87.20  E-value=0.84  Score=28.26  Aligned_cols=61  Identities=10%  Similarity=-0.032  Sum_probs=36.6

Q ss_pred             CHHHHHHHHHHHHhhc-cCCCC-cchHHHHHHHHHHhhCCC--CCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN-TNNRF-LHDNLVLCARKLASLLPD--PLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~-~~~~~-~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      ++.+.+++.+...... +.... ..+....+++.+.+..+.  ..+.|+.++++++++..+++.-
T Consensus        43 p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l  107 (389)
T d2gb3a1          43 PEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI  107 (389)
T ss_dssp             CTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccccccccc
Confidence            4556777765443331 11111 123346677777665432  3468999999999999888743

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=85.44  E-value=1.3  Score=27.87  Aligned_cols=41  Identities=20%  Similarity=0.060  Sum_probs=23.0

Q ss_pred             HHHHhhCCCCCCeEEeeC-ChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          39 RKLASLLPDPLSVCFFVN-SGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        39 ~~l~~~~p~~~~~v~f~~-sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      ..+++.++.+ ....++. +|+++++.++...|....++.||+
T Consensus       120 ~~~~~~~g~~-~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~  161 (434)
T d2z67a1         120 ESFFKQLGLN-VHAIATPISTGMSISLCLSAARKKYGSNVVIY  161 (434)
T ss_dssp             HHHHHHTTCC-CEEEEESSCHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             HHHHHhcCCC-cceeecCcHHHHHHHHHHHHHHHhhcCceEEE
Confidence            4455666543 3455554 455556666666666666666654

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=85.25  E-value=1.7  Score=26.61  Aligned_cols=60  Identities=15%  Similarity=-0.041  Sum_probs=37.6

Q ss_pred             CHHHHHHHHHHHHhh-c-cCC-CCcchHHHHHHHHHHhh--CCCCCCeEEeeCChHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALL-N-TNN-RFLHDNLVLCARKLASL--LPDPLSVCFFVNSGSEANDLALRL   68 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~-~-~~~-~~~~~~~~~la~~l~~~--~p~~~~~v~f~~sGseA~e~Alk~   68 (83)
                      +|.+++++.+.++.. . +.. ....+....+++.+...  .+.+.+.++++++|++|+..+++.
T Consensus        43 p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~  107 (375)
T d1o4sa_          43 PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMA  107 (375)
T ss_dssp             CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHH
Confidence            467888888877653 1 111 11223345566665543  233456899999999999988774

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=85.05  E-value=0.41  Score=29.53  Aligned_cols=52  Identities=12%  Similarity=0.097  Sum_probs=34.3

Q ss_pred             CCcchHHHHHHHHHHhhCCCCCCeEEeeCChHHHHHHHHHHHHhhcCCCceEE
Q psy6206          28 RFLHDNLVLCARKLASLLPDPLSVCFFVNSGSEANDLALRLARVHTNNDDVIT   80 (83)
Q Consensus        28 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk~ar~~~~r~~ii~   80 (83)
                      .||.+...+|.+.|.+...-+.+.|+.+++++|++..+++... -.|...|+.
T Consensus        52 rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~-~pgd~~Vl~  103 (354)
T d1fg7a_          52 RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC-EPGKDAILY  103 (354)
T ss_dssp             SCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC-CTTTCEEEE
T ss_pred             cCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhh-ccccccccc
Confidence            3444334567777777765556799999999999999887431 124434553

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.58  E-value=2.7  Score=26.14  Aligned_cols=61  Identities=10%  Similarity=-0.069  Sum_probs=39.3

Q ss_pred             CHHHHHHHHHHHHhhc--cCCCC-cchHHHHHHHHHHhhC--CCCCCeEEeeCChHHHHHHHHHHH
Q psy6206           9 HPAVVKAACTQLALLN--TNNRF-LHDNLVLCARKLASLL--PDPLSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         9 ~p~i~~a~~~~~~~~~--~~~~~-~~~~~~~la~~l~~~~--p~~~~~v~f~~sGseA~e~Alk~a   69 (83)
                      .+.+.+++.+.++...  +.... ..+....+++.+.+..  +...+.+..++++++++..+++..
T Consensus        48 p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~  113 (395)
T d1xi9a_          48 PEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL  113 (395)
T ss_dssp             CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhh
Confidence            3568899998886642  11111 2234456777776543  234568999999999998887643

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.24  E-value=0.8  Score=29.94  Aligned_cols=40  Identities=28%  Similarity=0.149  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhhCCCC---------CCeEEeeCChHHHHHHHHHHHHhh
Q psy6206          33 NLVLCARKLASLLPDP---------LSVCFFVNSGSEANDLALRLARVH   72 (83)
Q Consensus        33 ~~~~la~~l~~~~p~~---------~~~v~f~~sGseA~e~Alk~ar~~   72 (83)
                      ...++.+.|+++++-+         ..--.|+++||+||-.|+..||..
T Consensus       114 iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~  162 (476)
T d1js3a_         114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTK  162 (476)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHH
Confidence            3455667777776321         124579999999999999999964

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=82.53  E-value=1.6  Score=28.45  Aligned_cols=48  Identities=19%  Similarity=0.122  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHHhhCCCCCCeEEe-eCChHHHHHHHHHHHHhhcCCCceEEe
Q psy6206          32 DNLVLCARKLASLLPDPLSVCFF-VNSGSEANDLALRLARVHTNNDDVITQ   81 (83)
Q Consensus        32 ~~~~~la~~l~~~~p~~~~~v~f-~~sGseA~e~Alk~ar~~~~r~~ii~~   81 (83)
                      +.+-++-+.|++++  +++.+-+ ...|+.|.-.|+.+++++++|++++.-
T Consensus       108 q~l~e~q~~l~elt--Gmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~  156 (437)
T d1wyua1         108 QATFEYQTMIAELA--GLEIANASMYDGATALAEGVLLALRETGRMGVLVS  156 (437)
T ss_dssp             HHHHHHHHHHHHHH--TSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHHHHhh--CCCccccCchHHHHHHHHHHHHHHhhhcccccccc
Confidence            34567888889998  6776644 468999999999999999998887753

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=81.36  E-value=4.4  Score=25.24  Aligned_cols=64  Identities=14%  Similarity=0.062  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHhhcc---CCCCc-----chHHHHHHHHHHhhCCCC-CCeEEeeCChHHHHHHHHHHH
Q psy6206           6 GHCHPAVVKAACTQLALLNT---NNRFL-----HDNLVLCARKLASLLPDP-LSVCFFVNSGSEANDLALRLA   69 (83)
Q Consensus         6 Gh~~p~i~~a~~~~~~~~~~---~~~~~-----~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~Alk~a   69 (83)
                      |--.+.+.+++.+.++....   .+...     .+...+..+.+.+++... .+.++|++++++++...+...
T Consensus        32 ~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~  104 (408)
T d1t3ia_          32 SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSW  104 (408)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhc
Confidence            33467889999888876521   11111     133455677788888654 357999999999998877653