Psyllid ID: psy6496

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MGPKKGSGKSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHccccccccEEEEEEEEEccHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccccccccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHcccccccEEEEEEEEEccHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccHHHHHHHcccccccccccccccccccccEEEEEEEEccc
Coil and Loop (DISEMBL)
mgpkkgsgksskdkeedssgkqkkggtaVKVRHILCEKQSKVLEALEKLksgvkfpevaSQYSedkarqggdlgwmvrgsmvgefqdaafklpistvnnpvyteppiktkfgYHIIMVEGKK
Flexible Loop (DISEMBL)
mgpkkgsgksskdkeedssgkqkkggtavkvRHILCEKQSKVLEALEKLKsgvkfpevasqysedkarqggdlGWMVRGSMVGEFQDAAFKlpistvnnpvyteppiktkfgyHIIMVEGKK
Low Complexity Region (SEG)
MGPkkgsgksskdkeedssgkqkkggTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK
Disordered region (IsUnstruct)
****************************VKVRHILCEKQSKVLEALEKL*********************GDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMV****
Disordered Region (DISOPRED)
***************************AVKVRHILCEKQSKVLEALEKLKSGVKFPE******************MVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK*
Disordered Region (DISEMBL)
****************************VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK
Disordered Region (DISPRO)
******SGKSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED**RQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPKKGSGKSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q503Y7	128	Peptidyl-prolyl cis-trans	yes	N/A	0.885	0.843	0.768	2e-45
Q6P4K8	127	Peptidyl-prolyl cis-trans	yes	N/A	0.868	0.834	0.773	3e-45
A6QPY8	131	Peptidyl-prolyl cis-trans	yes	N/A	0.819	0.763	0.79	6e-43
Q9CWW6	131	Peptidyl-prolyl cis-trans	yes	N/A	0.901	0.839	0.709	2e-42
B5KFL3	128	Peptidyl-prolyl cis-trans	yes	N/A	0.819	0.781	0.76	3e-42
Q9Y237	131	Peptidyl-prolyl cis-trans	no	N/A	0.819	0.763	0.76	5e-42
Q4WJM6	129	Peptidyl-prolyl cis-trans	yes	N/A	0.778	0.736	0.639	1e-29
Q4I665	133	Peptidyl-prolyl cis-trans	yes	N/A	0.836	0.766	0.596	3e-29
Q5B5W1	128	Peptidyl-prolyl cis-trans	yes	N/A	0.959	0.914	0.561	2e-27
Q7RYY4	130	Peptidyl-prolyl cis-trans	N/A	N/A	0.893	0.838	0.526	4e-25

>sp|Q503Y7|PIN4_DANRE Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Danio rerio GN=pin4 PE=2 SV=1

 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 95/108 (87%)

Query: 15  EEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLG 74
           + D   K +KGGTAVKVRHILCEK  K +EA+EK+KSG++F EVA+QYSEDKARQGGDLG
Sbjct: 21  DSDKKEKAQKGGTAVKVRHILCEKHGKCMEAMEKIKSGMRFSEVAAQYSEDKARQGGDLG 80

Query: 75  WMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           WM RGSMVG FQDAAF LPIST++ PVYT+PP+KTKFGYHIIMVEGKK
Sbjct: 81  WMTRGSMVGPFQDAAFALPISTMDKPVYTDPPVKTKFGYHIIMVEGKK 128

May be involved as a ribosomal RNA processing factor in ribosome biogenesis. Binds to DNA.
Danio rerio (taxid: 7955)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q6P4K8|PIN4_XENTR Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Xenopus tropicalis GN=pin4 PE=2 SV=1

 Score =  179 bits (455), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 82/106 (77%), Positives = 93/106 (87%)

Query: 17  DSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWM 76
           D   +  KGG AVKVRHILCEK  KV+EA+EKLKSGV+F EVA+QYSEDKARQGGDLGWM
Sbjct: 22  DKKAQTPKGGNAVKVRHILCEKHGKVMEAMEKLKSGVRFSEVATQYSEDKARQGGDLGWM 81

Query: 77  VRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
            RGSMVG FQDAAF LP+ST++ PVYT+PP+KTKFGYHIIMVEG+K
Sbjct: 82  TRGSMVGPFQDAAFALPVSTMDKPVYTDPPVKTKFGYHIIMVEGRK 127

May be involved as a ribosomal RNA processing factor in ribosome biogenesis. Binds to DNA.

Xenopus tropicalis (taxid: 8364)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|A6QPY8|PIN4_BOVIN Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Bos taurus GN=PIN4 PE=2 SV=1

 Score =  172 bits (436), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 79/100 (79%), Positives = 90/100 (90%)

Query: 23  KKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMV 82
           K GG AVKVRHILCEK  K+LEA+EKLKSG+KF EVA+QYSEDKARQGGDLGWM RGSMV
Sbjct: 32  KGGGNAVKVRHILCEKHGKILEAMEKLKSGMKFNEVAAQYSEDKARQGGDLGWMTRGSMV 91

Query: 83  GEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           G FQ+AAF LPIS ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 92  GPFQEAAFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131

Involved as a ribosomal RNA processing factor in ribosome biogenesis. Binds to tightly bent AT-rich stretches of double-stranded DNA.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9CWW6|PIN4_MOUSE Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Mus musculus GN=Pin4 PE=2 SV=1

 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/110 (70%), Positives = 93/110 (84%)

Query: 13  DKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGD 72
           D  +  S   K GG AVKVRHILCEK  K++EA+EKLKSG++F EVA+QYSEDKARQGGD
Sbjct: 22  DSADKKSQGPKGGGNAVKVRHILCEKHGKIMEAMEKLKSGMRFSEVATQYSEDKARQGGD 81

Query: 73  LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           LGWM RGSMVG FQ+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 82  LGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131

Involved as a ribosomal RNA processing factor in ribosome biogenesis. Binds to tightly bent AT-rich stretches of double-stranded DNA.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|B5KFL3|PIN4_TAEGU Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Taeniopygia guttata GN=PIN4 PE=2 SV=1

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 90/100 (90%)

Query: 23  KKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMV 82
           K GG+AVKVRHILCEK  + +EA+EKLKSG +F EVA+QYSEDKARQGGDLGWM RGSMV
Sbjct: 29  KGGGSAVKVRHILCEKHGRAMEAMEKLKSGQRFSEVAAQYSEDKARQGGDLGWMTRGSMV 88

Query: 83  GEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           G FQ+AAF LP+S+++ PVYT+PP+KTKFGYHIIMVEG+K
Sbjct: 89  GPFQEAAFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 128

May be involved as a ribosomal RNA processing factor in ribosome biogenesis. Binds to DNA.

Taeniopygia guttata (taxid: 59729)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9Y237|PIN4_HUMAN Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Homo sapiens GN=PIN4 PE=1 SV=1

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 90/100 (90%)

Query: 23  KKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMV 82
           K GG AVKVRHILCEK  K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMV
Sbjct: 32  KGGGNAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMV 91

Query: 83  GEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           G FQ+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 92  GPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131

Isoform 2 binds to double-stranded DNA.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4WJM6|PIN4_ASPFU Peptidyl-prolyl cis-trans isomerase pin4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pin4 PE=3 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 75/97 (77%), Gaps = 2/97 (2%)

Query: 26  GTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEF 85
            T++ VRHILCEK SK  EALEKL++G KF +VA +YSEDKARQGG LGW VRGS+  +F
Sbjct: 35  ATSINVRHILCEKFSKKEEALEKLRNGAKFDDVAREYSEDKARQGGSLGWKVRGSLNADF 94

Query: 86  QDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           + AA++L  ST  NP Y E  +KT FGYHIIMVEG+K
Sbjct: 95  EKAAYELEPSTTANPKYVE--VKTGFGYHIIMVEGRK 129

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4I665|PIN4_GIBZE Peptidyl-prolyl cis-trans isomerase PIN4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PIN4 PE=3 SV=2

 Score =  126 bits (317), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 19  SGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVR 78
           SG + KG  ++ VRHILCEK +K  EAL KL  GVKF EVA +YSEDKARQGG LGW  +
Sbjct: 32  SGGKAKGAQSINVRHILCEKHAKKEEALAKLNDGVKFDEVAREYSEDKARQGGSLGWKTK 91

Query: 79  GSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           GS+  +F++ AF L  ST N+P + E  +KT FGYHIIMVEG+K
Sbjct: 92  GSLDPKFEEVAFALETSTTNSPKFVE--VKTGFGYHIIMVEGRK 133

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5B5W1|PIN4_EMENI Peptidyl-prolyl cis-trans isomerase pin4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pin4 PE=3 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 82/121 (67%), Gaps = 4/121 (3%)

Query: 2   GPKKGSGKSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQ 61
           G KK   K+  D ++DS GK K G  +V VRHILCEK SK  EALEK+++G KF EVA +
Sbjct: 12  GDKKSKAKAG-DAKDDSKGKMK-GAQSVNVRHILCEKFSKKEEALEKIRNGAKFDEVARE 69

Query: 62  YSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 121
           YSEDKARQGG LGW  +G +   F++ AF L  ST  NP   E   KT +GYHIIMVEG+
Sbjct: 70  YSEDKARQGGSLGWKSKGELELPFEEVAFSLEQSTTGNPKIGEA--KTGYGYHIIMVEGR 127

Query: 122 K 122
           K
Sbjct: 128 K 128

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7RYY4|PIN4_NEUCR Peptidyl-prolyl cis-trans isomerase pin-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pin-4 PE=3 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 76/112 (67%), Gaps = 3/112 (2%)

Query: 11  SKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQG 70
           +KD  +D+ GK  KG  ++ VRHILCEK  K  EAL K++ G  F  VA +YSEDKAR G
Sbjct: 22  NKDAGKDA-GKASKGAQSINVRHILCEKHGKKEEALAKIRDGADFGAVAREYSEDKARTG 80

Query: 71  GDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           G LGW  +G++  EF+  AF L  S+ ++P   E  +KT+FGYHIIMVEGKK
Sbjct: 81  GSLGWKQKGTLDPEFEKVAFALETSSTSSPKIGE--VKTQFGYHIIMVEGKK 130

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
91087021	128	PREDICTED: similar to peptidyl-prolyl ci	0.991	0.945	0.776	1e-48
357608695	135	peptidyl-prolyl cis-trans isomerase [Dan	0.934	0.844	0.817	4e-48
442757211	132	Putative parvulin-like peptidyl-prolyl c	0.901	0.833	0.827	2e-47
442752115	132	Putative parvulin-like peptidyl-prolyl c	0.901	0.833	0.827	2e-47
389611299	134	peptidyl-prolyl cis/trans isomerase [Pap	0.868	0.791	0.839	2e-47
21356303	130	CG11858 [Drosophila melanogaster] gi|730	0.885	0.830	0.824	2e-47
195573805	130	GD21195 [Drosophila simulans] gi|1942008	0.885	0.830	0.824	2e-47
195354844	126	GM17827 [Drosophila sechellia] gi|194129	0.885	0.857	0.824	2e-47
194741062	130	GF17558 [Drosophila ananassae] gi|194908	0.885	0.830	0.824	3e-47
242001848	132	rotamase, putative [Ixodes scapularis] g	0.901	0.833	0.818	5e-47

>gi|91087021|ref|XP_974228.1| PREDICTED: similar to peptidyl-prolyl cis-trans isomerase [Tribolium castaneum] gi|270010516|gb|EFA06964.1| hypothetical protein TcasGA2_TC009923 [Tribolium castaneum]

 Score =  196 bits (498), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/121 (77%), Positives = 102/121 (84%)

Query: 2   GPKKGSGKSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQ 61
           G  KG+ K SK  +     K+KKGGTAVKVRHILCEKQ K LEALEKLK+G KFPEVA+ 
Sbjct: 8   GASKGAAKGSKGDDSGEKSKEKKGGTAVKVRHILCEKQGKCLEALEKLKAGQKFPEVAAA 67

Query: 62  YSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 121
           YSEDKARQGGDLGWM RGSMVG FQDAAF LP+S VNNPVYT+PP+KTKFGYHIIMVEGK
Sbjct: 68  YSEDKARQGGDLGWMTRGSMVGPFQDAAFALPVSNVNNPVYTDPPVKTKFGYHIIMVEGK 127

Query: 122 K 122
           K
Sbjct: 128 K 128

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357608695|gb|EHJ66098.1| peptidyl-prolyl cis-trans isomerase [Danaus plexippus]

 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/115 (81%), Positives = 104/115 (90%), Gaps = 1/115 (0%)

Query: 8   GKSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKA 67
           GKSS D +E S+ K+KKGGTAVKVRHILCEKQSK LEALEK+K+G KFP+VA+ YSEDKA
Sbjct: 22  GKSSGDAKE-SAAKEKKGGTAVKVRHILCEKQSKCLEALEKIKAGQKFPDVAAAYSEDKA 80

Query: 68  RQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           RQGGDLGWM RGSMVG FQDAAF LPIS+V NP+YT+PPIKTKFGYHIIMVEGKK
Sbjct: 81  RQGGDLGWMTRGSMVGPFQDAAFALPISSVTNPIYTDPPIKTKFGYHIIMVEGKK 135

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442757211|gb|JAA70764.1| Putative parvulin-like peptidyl-prolyl cis-trans isomerase [Ixodes ricinus]

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/110 (82%), Positives = 99/110 (90%)

Query: 13  DKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGD 72
           ++  DS GKQ KGGTAVKVRHILCEKQSKVLEALEK+K G+KF EVA+ YSEDKARQGGD
Sbjct: 23  EEASDSKGKQAKGGTAVKVRHILCEKQSKVLEALEKIKGGMKFNEVAATYSEDKARQGGD 82

Query: 73  LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           LGWM RGSMVG FQDAAF LPIST+ NPVYT+PP+KTKFGYHIIMVEGKK
Sbjct: 83  LGWMTRGSMVGPFQDAAFALPISTLANPVYTDPPVKTKFGYHIIMVEGKK 132

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442752115|gb|JAA68217.1| Putative parvulin-like peptidyl-prolyl cis-trans isomerase [Ixodes ricinus]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/110 (82%), Positives = 99/110 (90%)

Query: 13  DKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGD 72
           ++  DS GKQ KGGTAVKVRHILCEKQSKVLEALEK+K G+KF EVA+ YSEDKARQGGD
Sbjct: 23  EEASDSKGKQAKGGTAVKVRHILCEKQSKVLEALEKIKGGMKFNEVAASYSEDKARQGGD 82

Query: 73  LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           LGWM RGSMVG FQDAAF LPIST+ NPVYT+PP+KTKFGYHIIMVEGKK
Sbjct: 83  LGWMTRGSMVGPFQDAAFALPISTLANPVYTDPPVKTKFGYHIIMVEGKK 132

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611299|dbj|BAM19261.1| peptidyl-prolyl cis/trans isomerase [Papilio polytes]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/106 (83%), Positives = 98/106 (92%)

Query: 17  DSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWM 76
           +S+ K+KKGGTAVKVRHILCEKQSK LEALEKLK+G KFP+VA+ YSEDKARQGGDLGWM
Sbjct: 29  ESAAKEKKGGTAVKVRHILCEKQSKCLEALEKLKAGQKFPDVAAAYSEDKARQGGDLGWM 88

Query: 77  VRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
            RGSMVG FQDAAF LPIS++ NPVYT+PPIKTKFGYHIIMVEGKK
Sbjct: 89  TRGSMVGPFQDAAFALPISSITNPVYTDPPIKTKFGYHIIMVEGKK 134

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21356303|ref|NP_651364.1| CG11858 [Drosophila melanogaster] gi|7301304|gb|AAF56433.1| CG11858 [Drosophila melanogaster] gi|17946706|gb|AAL49383.1| RH66629p [Drosophila melanogaster] gi|220958600|gb|ACL91843.1| CG11858-PA [synthetic construct]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/108 (82%), Positives = 99/108 (91%)

Query: 15  EEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLG 74
           E+ S+GK+KKGG AVKVRHILCEKQ K+ EA+EKLK+G KFPEVA+ YSEDKARQGGDLG
Sbjct: 23  EDKSAGKEKKGGNAVKVRHILCEKQGKITEAMEKLKAGQKFPEVAAAYSEDKARQGGDLG 82

Query: 75  WMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           W +RG+MVG FQDAAF LPISTVNNPVYT+PPIKTKFGYHIIMVEGKK
Sbjct: 83  WQIRGAMVGPFQDAAFALPISTVNNPVYTDPPIKTKFGYHIIMVEGKK 130

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195573805|ref|XP_002104882.1| GD21195 [Drosophila simulans] gi|194200809|gb|EDX14385.1| GD21195 [Drosophila simulans]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/108 (82%), Positives = 99/108 (91%)

Query: 15  EEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLG 74
           E+ S+GK+KKGG AVKVRHILCEKQ K+ EA+EKLK+G KFPEVA+ YSEDKARQGGDLG
Sbjct: 23  EDKSAGKEKKGGNAVKVRHILCEKQGKITEAMEKLKAGQKFPEVAAAYSEDKARQGGDLG 82

Query: 75  WMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           W +RG+MVG FQDAAF LPISTVNNPVYT+PPIKTKFGYHIIMVEGKK
Sbjct: 83  WQIRGAMVGPFQDAAFALPISTVNNPVYTDPPIKTKFGYHIIMVEGKK 130

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195354844|ref|XP_002043906.1| GM17827 [Drosophila sechellia] gi|194129144|gb|EDW51187.1| GM17827 [Drosophila sechellia]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/108 (82%), Positives = 99/108 (91%)

Query: 15  EEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLG 74
           E+ S+GK+KKGG AVKVRHILCEKQ K+ EA+EKLK+G KFPEVA+ YSEDKARQGGDLG
Sbjct: 19  EDKSAGKEKKGGNAVKVRHILCEKQGKITEAMEKLKAGQKFPEVAAAYSEDKARQGGDLG 78

Query: 75  WMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           W +RG+MVG FQDAAF LPISTVNNPVYT+PPIKTKFGYHIIMVEGKK
Sbjct: 79  WQIRGAMVGPFQDAAFALPISTVNNPVYTDPPIKTKFGYHIIMVEGKK 126

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194741062|ref|XP_001953008.1| GF17558 [Drosophila ananassae] gi|194908758|ref|XP_001981834.1| GG11384 [Drosophila erecta] gi|195504429|ref|XP_002099075.1| GE23581 [Drosophila yakuba] gi|190626067|gb|EDV41591.1| GF17558 [Drosophila ananassae] gi|190656472|gb|EDV53704.1| GG11384 [Drosophila erecta] gi|194185176|gb|EDW98787.1| GE23581 [Drosophila yakuba]

 Score =  192 bits (487), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/108 (82%), Positives = 99/108 (91%)

Query: 15  EEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLG 74
           E+ S+GK+KKGG AVKVRHILCEKQ K+ EA+EKLK+G KFPEVA+ YSEDKARQGGDLG
Sbjct: 23  EDKSAGKEKKGGNAVKVRHILCEKQGKITEAMEKLKAGQKFPEVAAAYSEDKARQGGDLG 82

Query: 75  WMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           W +RG+MVG FQDAAF LPISTVNNPVYT+PPIKTKFGYHIIMVEGKK
Sbjct: 83  WQIRGAMVGPFQDAAFALPISTVNNPVYTDPPIKTKFGYHIIMVEGKK 130

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242001848|ref|XP_002435567.1| rotamase, putative [Ixodes scapularis] gi|215498903|gb|EEC08397.1| rotamase, putative [Ixodes scapularis]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 98/110 (89%)

Query: 13  DKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGD 72
           ++  DS GKQ KGGTAVKVRHILCEKQSKVLEALEK+K G+KF E A+ YSEDKARQGGD
Sbjct: 23  EEASDSKGKQAKGGTAVKVRHILCEKQSKVLEALEKIKGGMKFNEAAATYSEDKARQGGD 82

Query: 73  LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           LGWM RGSMVG FQDAAF LPIST+ NPVYT+PP+KTKFGYHIIMVEGKK
Sbjct: 83  LGWMTRGSMVGPFQDAAFALPISTLANPVYTDPPVKTKFGYHIIMVEGKK 132

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
FB|FBgn0039305	130	CG11858 [Drosophila melanogast	0.778	0.730	0.852	3.6e-41
ZFIN|ZDB-GENE-050522-117	128	pin4 "protein (peptidylprolyl	0.786	0.75	0.812	6.8e-40
UNIPROTKB|A6QPY8	131	PIN4 "Peptidyl-prolyl cis-tran	0.778	0.725	0.8	9.9e-39
UNIPROTKB|I3LBW5	131	PIN4 "Uncharacterized protein"	0.778	0.725	0.8	9.9e-39
UNIPROTKB|F1NCD7	141	PIN4 "Uncharacterized protein"	0.786	0.680	0.770	1.6e-38
WB|WBGene00012996	126	pinn-4 [Caenorhabditis elegans	0.786	0.761	0.791	3.4e-38
UNIPROTKB|Q9Y237	131	PIN4 "Peptidyl-prolyl cis-tran	0.778	0.725	0.768	7e-38
UNIPROTKB|J9NZU7	118	PIN4 "Uncharacterized protein"	0.770	0.796	0.744	2.1e-36
UNIPROTKB|F1P6G4	151	LOC100687619 "Uncharacterized	0.770	0.622	0.744	4.4e-36
ASPGD|ASPL0000015747	128	par1 [Emericella nidulans (tax	0.762	0.726	0.6	2e-24

FB|FBgn0039305 CG11858 [Drosophila melanogaster (taxid:7227)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 81/95 (85%), Positives = 88/95 (92%)

Query:    28 AVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQD 87
             AVKVRHILCEKQ K+ EA+EKLK+G KFPEVA+ YSEDKARQGGDLGW +RG+MVG FQD
Sbjct:    36 AVKVRHILCEKQGKITEAMEKLKAGQKFPEVAAAYSEDKARQGGDLGWQIRGAMVGPFQD 95

Query:    88 AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
             AAF LPISTVNNPVYT+PPIKTKFGYHIIMVEGKK
Sbjct:    96 AAFALPISTVNNPVYTDPPIKTKFGYHIIMVEGKK 130

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

ZFIN|ZDB-GENE-050522-117 pin4 "protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)" [Danio rerio (taxid:7955)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 78/96 (81%), Positives = 88/96 (91%)

Query:    27 TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQ 86
             TAVKVRHILCEK  K +EA+EK+KSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ
Sbjct:    33 TAVKVRHILCEKHGKCMEAMEKIKSGMRFSEVAAQYSEDKARQGGDLGWMTRGSMVGPFQ 92

Query:    87 DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
             DAAF LPIST++ PVYT+PP+KTKFGYHIIMVEGKK
Sbjct:    93 DAAFALPISTMDKPVYTDPPVKTKFGYHIIMVEGKK 128

GO:0016853 "isomerase activity" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|A6QPY8 PIN4 "Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4" [Bos taurus (taxid:9913)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 76/95 (80%), Positives = 87/95 (91%)

Query:    28 AVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQD 87
             AVKVRHILCEK  K+LEA+EKLKSG+KF EVA+QYSEDKARQGGDLGWM RGSMVG FQ+
Sbjct:    37 AVKVRHILCEKHGKILEAMEKLKSGMKFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQE 96

Query:    88 AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
             AAF LPIS ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct:    97 AAFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131

GO:0005819 "spindle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0030684 "preribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003681 "bent DNA binding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|I3LBW5 PIN4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 76/95 (80%), Positives = 87/95 (91%)

Query:    28 AVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQD 87
             AVKVRHILCEK  K+LEA+EKLKSG+KF EVA+QYSEDKARQGGDLGWM RGSMVG FQ+
Sbjct:    37 AVKVRHILCEKHGKILEAMEKLKSGMKFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQE 96

Query:    88 AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
             AAF LPIS ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct:    97 AAFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131

GO:0030684 "preribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003681 "bent DNA binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|F1NCD7 PIN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 74/96 (77%), Positives = 88/96 (91%)

Query:    27 TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQ 86
             +AVKVRHILCEK  + +EA+EKLK+GV+F EVASQYSEDKARQGGDLGWM RGSMVG FQ
Sbjct:    46 SAVKVRHILCEKHGRAMEAMEKLKAGVRFSEVASQYSEDKARQGGDLGWMTRGSMVGPFQ 105

Query:    87 DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
             +AAF LP+S+++ PVYT+PP+KTKFGYHIIMVEG+K
Sbjct:   106 EAAFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 141

GO:0016853 "isomerase activity" evidence=IEA

GO:0003681 "bent DNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030684 "preribosome" evidence=IEA

WB|WBGene00012996 pinn-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 76/96 (79%), Positives = 85/96 (88%)

Query:    27 TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQ 86
             TAVKVRHILCEKQ K LEA+EKLKSG+KF EVA+QYSEDKAR GGDLGWM RGSMVG FQ
Sbjct:    31 TAVKVRHILCEKQGKALEAIEKLKSGMKFNEVAAQYSEDKARSGGDLGWMTRGSMVGPFQ 90

Query:    87 DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
             DAAF L  S+ + P+YT+PP+KTKFGYH+IMVEGKK
Sbjct:    91 DAAFALSNSSCDKPIYTDPPVKTKFGYHVIMVEGKK 126

GO:0016853 "isomerase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q9Y237 PIN4 "Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 73/95 (76%), Positives = 87/95 (91%)

Query:    28 AVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQD 87
             AVKVRHILCEK  K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ+
Sbjct:    37 AVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQE 96

Query:    88 AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
             AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct:    97 AAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131

GO:0003677 "DNA binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA;IDA

GO:0005819 "spindle" evidence=IEA;IDA

GO:0003681 "bent DNA binding" evidence=IDA

GO:0006364 "rRNA processing" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030684 "preribosome" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=IDA

UNIPROTKB|J9NZU7 PIN4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 70/94 (74%), Positives = 85/94 (90%)

Query:    29 VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDA 88
             +KVRHILCEK  K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ+A
Sbjct:    25 IKVRHILCEKHGKIMEAMEKLKSGMRFNEVATQYSEDKARQGGDLGWMTRGSMVGPFQEA 84

Query:    89 AFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
             AF LP+S  + PV+T+PPI+T+FGYHIIMVEG+K
Sbjct:    85 AFALPVSGPDEPVFTDPPIRTEFGYHIIMVEGRK 118

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|F1P6G4 LOC100687619 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 70/94 (74%), Positives = 84/94 (89%)

Query:    29 VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDA 88
             +KV HILCEK  K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ+A
Sbjct:    58 IKVGHILCEKHGKIMEAMEKLKSGMRFNEVATQYSEDKARQGGDLGWMTRGSMVGPFQEA 117

Query:    89 AFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
             AF LP+S  + PV+T+PPI+TKFGYHIIMVEG+K
Sbjct:   118 AFALPVSGPDKPVFTDPPIRTKFGYHIIMVEGRK 151

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

ASPGD|ASPL0000015747 par1 [Emericella nidulans (taxid:162425)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 57/95 (60%), Positives = 68/95 (71%)

Query:    28 AVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQD 87
             +V VRHILCEK SK  EALEK+++G KF EVA +YSEDKARQGG LGW  +G +   F++
Sbjct:    36 SVNVRHILCEKFSKKEEALEKIRNGAKFDEVAREYSEDKARQGGSLGWKSKGELELPFEE 95

Query:    88 AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
              AF L  ST  NP   E   KT +GYHIIMVEG+K
Sbjct:    96 VAFSLEQSTTGNPKIGEA--KTGYGYHIIMVEGRK 128

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4I665	PIN4_GIBZE	5, ., 2, ., 1, ., 8	0.5961	0.8360	0.7669	yes	N/A
Q4WJM6	PIN4_ASPFU	5, ., 2, ., 1, ., 8	0.6391	0.7786	0.7364	yes	N/A
Q503Y7	PIN4_DANRE	5, ., 2, ., 1, ., 8	0.7685	0.8852	0.8437	yes	N/A
B5KFL3	PIN4_TAEGU	5, ., 2, ., 1, ., 8	0.76	0.8196	0.7812	yes	N/A
Q9Y237	PIN4_HUMAN	5, ., 2, ., 1, ., 8	0.76	0.8196	0.7633	no	N/A
Q5B5W1	PIN4_EMENI	5, ., 2, ., 1, ., 8	0.5619	0.9590	0.9140	yes	N/A
Q7RYY4	PIN4_NEUCR	5, ., 2, ., 1, ., 8	0.5267	0.8934	0.8384	N/A	N/A
A6QPY8	PIN4_BOVIN	5, ., 2, ., 1, ., 8	0.79	0.8196	0.7633	yes	N/A
Q6P4K8	PIN4_XENTR	5, ., 2, ., 1, ., 8	0.7735	0.8688	0.8346	yes	N/A
Q9CWW6	PIN4_MOUSE	5, ., 2, ., 1, ., 8	0.7090	0.9016	0.8396	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.983
4th Layer	5.2.1.8	0.979

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	122
pfam00639	94	pfam00639, Rotamase, PPIC-type PPIASE domain	7e-20
pfam13616	114	pfam13616, Rotamase_3, PPIC-type PPIASE domain	6e-19
PRK02998	283	PRK02998, prsA, peptidylprolyl isomerase; Reviewed	8e-14
PRK03002	285	PRK03002, prsA, peptidylprolyl isomerase; Reviewed	3e-13
PRK03095	287	PRK03095, prsA, peptidylprolyl isomerase; Reviewed	1e-12
COG0760	320	COG0760, SurA, Parvulin-like peptidyl-prolyl isome	5e-12
PTZ00356	115	PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isom	2e-11
PRK15441	93	PRK15441, PRK15441, peptidyl-prolyl cis-trans isom	7e-10
PRK10770	413	PRK10770, PRK10770, peptidyl-prolyl cis-trans isom	7e-10
PRK00059	336	PRK00059, prsA, peptidylprolyl isomerase; Provisio	2e-09
PRK04405	298	PRK04405, prsA, peptidylprolyl isomerase; Provisio	8e-09
TIGR02933	256	TIGR02933, nifM_nitrog, nitrogen fixation protein	3e-07
PRK10788	623	PRK10788, PRK10788, periplasmic folding chaperone;	2e-06
pfam13145	121	pfam13145, Rotamase_2, PPIC-type PPIASE domain	9e-04
PRK10770	413	PRK10770, PRK10770, peptidyl-prolyl cis-trans isom	0.003

>gnl|CDD|216038 pfam00639, Rotamase, PPIC-type PPIASE domain

 Score = 77.3 bits (191), Expect = 7e-20
 Identities = 40/100 (40%), Positives = 51/100 (51%), Gaps = 18/100 (18%)

Query: 33  HILCEKQSKVL---------EALEKLKSGV-KFPEVASQYSEDK--ARQGGDLGWMVRGS 80
           HIL +               E LE+L+SG   F E+A +YS+D   A  GGDLGW  RG 
Sbjct: 1   HILIKPPESADRAAAKAKAEEILEQLQSGEDTFAELAREYSDDCPSAANGGDLGWFTRGQ 60

Query: 81  MVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120
           +  EF+DAAF L    +        P++T FGYHII V  
Sbjct: 61  LPPEFEDAAFSLKEGEI------SGPVETPFGYHIIKVTD 94

Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 94

>gnl|CDD|222266 pfam13616, Rotamase_3, PPIC-type PPIASE domain

 Score = 75.4 bits (186), Expect = 6e-19
 Identities = 42/106 (39%), Positives = 50/106 (47%), Gaps = 19/106 (17%)

Query: 29  VKVRHILCEKQSKVLEA---------LEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMV 77
           VKVRHIL        +A            LK G  F  +A +YS+D     QGGDLGW  
Sbjct: 16  VKVRHILVAYAGAQRKAEAKALADSIYNALKGGADFAALAKKYSDDPGSKAQGGDLGWFT 75

Query: 78  -RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
             G MV EF DA F L +  +         ++T FGYHII V  KK
Sbjct: 76  ASGQMVKEFIDALFTLKVGEIG-------VVETPFGYHIIQVTDKK 114

Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 114

>gnl|CDD|179522 PRK02998, prsA, peptidylprolyl isomerase; Reviewed

 Score = 65.4 bits (159), Expect = 8e-14
 Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 8/96 (8%)

Query: 29  VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKA--RQGGDLGWMVRGSMVGEFQ 86
           +KV HIL + +    E  EK+ +G  F  +A QYSED     QGG++     G  V EF+
Sbjct: 135 MKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFE 194

Query: 87  DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           +AA+KL    V+ PV      KT +GYHII V  KK
Sbjct: 195 EAAYKLDAGQVSEPV------KTTYGYHIIKVTDKK 224

Length = 283

>gnl|CDD|101162 PRK03002, prsA, peptidylprolyl isomerase; Reviewed

 Score = 63.8 bits (155), Expect = 3e-13
 Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 8/96 (8%)

Query: 29  VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKA--RQGGDLGWMVRGSMVGEFQ 86
           +K  HIL   +++  E  +KL +G  F E+A Q S+D     +GGDLG+   G M  EF+
Sbjct: 137 IKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFE 196

Query: 87  DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
            AA+KL +  ++NPV      K+  GYHII +  KK
Sbjct: 197 TAAYKLKVGQISNPV------KSPNGYHIIKLTDKK 226

Length = 285

>gnl|CDD|179537 PRK03095, prsA, peptidylprolyl isomerase; Reviewed

 Score = 61.9 bits (150), Expect = 1e-12
 Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 13/117 (11%)

Query: 4   KKGSGKSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYS 63
           +K   K+  DKE   + K +     +K  HIL + ++   +  E+L  G  F E+A QYS
Sbjct: 113 EKAIEKTITDKELKDNYKPE-----IKASHILVKDEATAKKVKEELGQGKSFEELAKQYS 167

Query: 64  EDKA--RQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMV 118
           ED     +GGDLG+   G MV EF+DAA+KL    V+ PV      K++FGYHII V
Sbjct: 168 EDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPV------KSQFGYHIIKV 218

Length = 287

>gnl|CDD|223831 COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

 Score = 60.5 bits (146), Expect = 5e-12
 Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 13/121 (10%)

Query: 9   KSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLK-----SGVKFPEVASQYS 63
           ++   +++  + +Q K  T V+ RHIL + ++K  EAL  LK     +   F E+A + S
Sbjct: 149 EAEALRDKLQNKQQGKKVTEVQARHILVKAEAKAKEALALLKKGVREAKADFAELAKKQS 208

Query: 64  ED--KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 121
           ED      GG LGW  +G +V EF+ AAF L          +  P+KT FGYHII VE K
Sbjct: 209 EDPSSKNGGGLLGWNKKGQLVPEFRKAAFILK-----VGEVSA-PVKTSFGYHIIKVEKK 262

Query: 122 K 122
           +
Sbjct: 263 R 263

Length = 320

>gnl|CDD|185573 PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%)

Query: 50  KSGVKFPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIK 108
                F E+A Q S+   A +GGDLG+  RG M   F+DAAF L +  +++ V+T+    
Sbjct: 50  SGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQMQKPFEDAAFALKVGEISDIVHTDS--- 106

Query: 109 TKFGYHII 116
              G HII
Sbjct: 107 ---GVHII 111

Length = 115

>gnl|CDD|185338 PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional

 Score = 51.6 bits (123), Expect = 7e-10
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 33  HILCEKQSKVLEALEKLKSGVKFPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFK 91
           HIL +++   L+ LE++K+G  F ++A ++S     ++GGDLG   +G MV  F    F 
Sbjct: 9   HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFS 68

Query: 92  LPISTVNNPVYTEPPIKTKFGYHIIMV 118
            P+      +    P+ T+FGYHII V
Sbjct: 69  CPV------LEPTGPLHTQFGYHIIKV 89

Length = 93

>gnl|CDD|236758 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional

 Score = 54.7 bits (132), Expect = 7e-10
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 18/109 (16%)

Query: 20  GKQKKGGTAVKVRHILC---------EKQSKVLEALEKLKSG-VKFPEVASQYSED--KA 67
             Q    T V  RHIL          + ++K+ +    +KSG   F   A ++S+D   A
Sbjct: 258 ESQNISVTEVHARHILLKPSPIMTDEQARAKLEQIAADIKSGKTTFAAAAKEFSQDPGSA 317

Query: 68  RQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
            QGGDLGW         F+DA  +L    ++ PV++       FG+H+I
Sbjct: 318 NQGGDLGWATPDIFDPAFRDALMRLNKGQISAPVHSS------FGWHLI 360

Length = 413

>gnl|CDD|234605 PRK00059, prsA, peptidylprolyl isomerase; Provisional

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 5   KGSGKSSKDKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSE 64
           K + K ++    ++  K  +    + + HIL + + +  +  ++L  G  F +VA + S+
Sbjct: 173 KVTDKDAQKYYNENKSKFTEKPNTMHLAHILVKTEDEAKKVKKRLDKGEDFAKVAKEVSQ 232

Query: 65  DKA--RQGGDLGWM--VRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120
           D     +GGDLG +         EF D A  L    ++ PV      KT+FGYHII    
Sbjct: 233 DPGSKDKGGDLGDVPYSDSGYDKEFMDGAKALKEGEISAPV------KTQFGYHIIKAIK 286

Query: 121 KK 122
           KK
Sbjct: 287 KK 288

Length = 336

>gnl|CDD|235295 PRK04405, prsA, peptidylprolyl isomerase; Provisional

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 29  VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKA--RQGGDLGW--MVRGSMVGE 84
           V V+HIL  K+S     ++KLK G  F ++A +YS D A   +GG L        ++   
Sbjct: 145 VTVQHILVSKKSTAETVIKKLKDGKDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDST 204

Query: 85  FQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
           F+ AAFKL      N  YT  P+KT +GY +I
Sbjct: 205 FKTAAFKL-----KNGEYTTTPVKTTYGYEVI 231

Length = 298

>gnl|CDD|131979 TIGR02933, nifM_nitrog, nitrogen fixation protein NifM

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 16/98 (16%)

Query: 32  RHILC-------EKQSKVLEALEK-LKSG-VKFPEVASQYSE-DKARQGGDLGWMVRGSM 81
           RH+L        E     + A+ + L+     F E A ++S    A +GG LGW+ RG +
Sbjct: 127 RHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGLLGWVSRGLL 186

Query: 82  VGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 119
             +   A F+L    ++      PPI+++ G+H+++ E
Sbjct: 187 YPQLDAALFQLAEGELS------PPIESEIGWHLLLCE 218

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase [Central intermediary metabolism, Nitrogen fixation]. Length = 256

>gnl|CDD|182731 PRK10788, PRK10788, periplasmic folding chaperone; Provisional

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 44  EALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFK 91
             L++LK G  F  +A + S D   AR GGDLGW+   +   E ++A  K
Sbjct: 286 AVLDELKKGADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGLK 335

Length = 623

>gnl|CDD|221934 pfam13145, Rotamase_2, PPIC-type PPIASE domain

 Score = 36.3 bits (84), Expect = 9e-04
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 11/87 (12%)

Query: 37  EKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVG-EFQDAAFKLPIS 95
           E  +    AL K K+G  F  +A     D      DL      S +  E  +A F L   
Sbjct: 33  EVAADAAAALLKGKAGEDFAALAKGEGID----ATDLDLFESDSDLPEELAEALFALKPG 88

Query: 96  TVNNPVYTEPPIKTKFGYHIIMVEGKK 122
            V        PI++  GY+++ V    
Sbjct: 89  EV------SGPIESDNGYYLVRVTEIL 109

Length = 121

>gnl|CDD|236758 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 25/115 (21%)

Query: 20  GKQKKGGTAVKVRHIL-----------CEKQSKVLEAL-EKLKSGVKFPEVASQYSED-K 66
           G Q    T + + HIL            ++      ++ ++ ++G  F ++A  YS D +
Sbjct: 147 GNQNDASTELNLSHILIPLPENPTQDQVDEAESQARSIVDQARNGADFGKLAIAYSADQQ 206

Query: 67  ARQGGDLGWMVRGSMVGEFQDA---AFKLPISTVNNPVYTEPPIKTKFGYHIIMV 118
           A +GG +GW     + G F  A   A K  I           PI++  G+HI+ V
Sbjct: 207 ALKGGQMGWGRIQELPGLFAQALSTAKKGDIVG---------PIRSGVGFHILKV 252

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PF13616	117	Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3	99.94
PRK15441	93	peptidyl-prolyl cis-trans isomerase C; Provisional	99.93
KOG3258|consensus	133		99.9
PF00639	95	Rotamase: PPIC-type PPIASE domain; InterPro: IPR00	99.89
PTZ00356	115	peptidyl-prolyl cis-trans isomerase (PPIase); Prov	99.89
PRK03002	285	prsA peptidylprolyl isomerase; Reviewed	99.88
PRK02998	283	prsA peptidylprolyl isomerase; Reviewed	99.88
TIGR02933	256	nifM_nitrog nitrogen fixation protein NifM. Member	99.88
PRK03095	287	prsA peptidylprolyl isomerase; Reviewed	99.88
PRK04405	298	prsA peptidylprolyl isomerase; Provisional	99.87
PRK10770	413	peptidyl-prolyl cis-trans isomerase SurA; Provisio	99.86
PRK00059	336	prsA peptidylprolyl isomerase; Provisional	99.85
PRK12450	309	foldase protein PrsA; Reviewed	99.84
PRK01326	310	prsA foldase protein PrsA; Reviewed	99.82
PRK10788	623	periplasmic folding chaperone; Provisional	99.81
PRK10770	413	peptidyl-prolyl cis-trans isomerase SurA; Provisio	99.8
TIGR02925	232	cis_trans_EpsD peptidyl-prolyl cis-trans isomerase	99.8
KOG3259|consensus	163		99.73
COG0760	320	SurA Parvulin-like peptidyl-prolyl isomerase [Post	99.54
PF13145	121	Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2	99.18
PRK10788	623	periplasmic folding chaperone; Provisional	94.42

>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A

Probab=99.94  E-value=7.8e-27  Score=159.04  Aligned_cols=93  Identities=43%  Similarity=0.752  Sum_probs=84.4

Q ss_pred             CCCceEEEEEEEecC-----------HHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCccccee-CCCCcHHHHHHH
Q psy6496          24 KGGTAVKVRHILCEK-----------QSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMV-RGSMVGEFQDAA   89 (122)
Q Consensus        24 ~~~~~v~v~~I~v~~-----------~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~-~~~l~~~~~~a~   89 (122)
                      ..+++|+++||+|+.           +..|++|+.+|++|.+|++||++||.|+  +.+||++||++ .+.++++|.+++
T Consensus        11 ~~~~~v~~~~I~i~~~~~~~~~~~~ak~~a~~i~~~l~~G~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~   90 (117)
T PF13616_consen   11 QAPDEVKVSHILIPVPDASSRSKEEAKKKADSILKQLKSGADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAA   90 (117)
T ss_dssp             GE--EEEEEEEEESS-----------HHHHHHHHHHHHCTCCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHH
T ss_pred             CCcCeEEEEEEEEeccccccchhHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHH
Confidence            367899999999996           6789999999999999999999999984  68999999999 999999999999


Q ss_pred             hcCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          90 FKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        90 ~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      ++|++|++|+      ||++++|||||+|++||
T Consensus        91 ~~l~~G~is~------~v~s~~G~hIikv~drk  117 (117)
T PF13616_consen   91 FSLKVGEISG------PVESPNGYHIIKVTDRK  117 (117)
T ss_dssp             HHS-TTECTC------EEEETTEEEEEEEEEE-
T ss_pred             HcCCCCCCCC------eEEECCEEEEEEEEeeC
Confidence            9999999998      99999999999999997

>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional

Probab=99.93  E-value=9.3e-26  Score=148.28  Aligned_cols=89  Identities=35%  Similarity=0.608  Sum_probs=84.9

Q ss_pred             ceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh-hhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCC
Q psy6496          27 TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEP  105 (122)
Q Consensus        27 ~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~-~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~  105 (122)
                      ..+.++||++.+++.|++++++|++|.+|+++|++||.++ ...||++||+..++|||+|.+++++|++|++|+      
T Consensus         3 ~~~~~~~I~~~~~~~A~~i~~~l~~g~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~------   76 (93)
T PRK15441          3 KTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTG------   76 (93)
T ss_pred             CceEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHhCCCchhhcCccceeecccccCHHHHHHHHhCCCCCcCC------
Confidence            5789999999999999999999999999999999999984 568999999999999999999999999999998      


Q ss_pred             CeeeCceEEEEEEeee
Q psy6496         106 PIKTKFGYHIIMVEGK  121 (122)
Q Consensus       106 pi~s~~G~hIvkv~dr  121 (122)
                      ||++++|||||+|++|
T Consensus        77 Pi~t~~G~hIlkv~~r   92 (93)
T PRK15441         77 PLHTQFGYHIIKVLYR   92 (93)
T ss_pred             cEEcCCEEEEEEEEec
Confidence            9999999999999997

>KOG3258|consensus

Probab=99.90  E-value=1.9e-23  Score=139.72  Aligned_cols=100  Identities=83%  Similarity=1.321  Sum_probs=95.0

Q ss_pred             cCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchhhhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCC
Q psy6496          23 KKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVY  102 (122)
Q Consensus        23 ~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~  102 (122)
                      .....-|.+|||+...+-++.++++.|++|..|.++|.+||+|.+.+||||||++++.|.-.|++++|+|+++.+..|++
T Consensus        34 kgggtaVKvRHiLCEKqGKi~EA~eKLk~G~~F~evAA~YSEdkar~GGDLGW~~RG~MvGPFQdaAFalpvs~~~~pv~  113 (133)
T KOG3258|consen   34 KGGGTAVKVRHILCEKQGKINEAMEKLKSGMKFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQDAAFALPVSTVDKPVY  113 (133)
T ss_pred             CCCcceEEEEEeeehhhchHHHHHHHHHcccchHHHHHHhccCccccCCcccceeccccccchhhhhhcccccccCCccc
Confidence            44557899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeCceEEEEEEeeeC
Q psy6496         103 TEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus       103 ~~~pi~s~~G~hIvkv~drr  122 (122)
                      ++.||+|.+|||||.|..|+
T Consensus       114 TdpP~KtkfGYHiImvEGrK  133 (133)
T KOG3258|consen  114 TDPPVKTKFGYHIIMVEGRK  133 (133)
T ss_pred             cCCCcccccceEEEEecccC
Confidence            99999999999999998875

>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5

Probab=99.89  E-value=1.4e-22  Score=133.28  Aligned_cols=82  Identities=50%  Similarity=0.830  Sum_probs=75.7

Q ss_pred             EEEecC----------HHHHHHHHHHhcCCCC-HHHHHHHhcch--hhhcCCcccceeCCCCcHHHHHHHhcCCCCcccC
Q psy6496          33 HILCEK----------QSKVLEALEKLKSGVK-FPEVASQYSED--KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNN   99 (122)
Q Consensus        33 ~I~v~~----------~~~A~~i~~~l~~g~s-F~~la~~~S~d--~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~   99 (122)
                      ||+++.          ++.|++++.+|++|.+ |+++|++||.+  ++.+||++||+..+.||++|.+++++|++|++|+
T Consensus         1 HIl~~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs~   80 (95)
T PF00639_consen    1 HILVKPPPSDEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVSK   80 (95)
T ss_dssp             EEEEESTTSCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBEE
T ss_pred             CEEEECCCchhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcCC
Confidence            788874          5678999999999975 99999999965  4789999999999999999999999999999998


Q ss_pred             CCCCCCCeeeCceEEEEEEee
Q psy6496         100 PVYTEPPIKTKFGYHIIMVEG  120 (122)
Q Consensus       100 ~~~~~~pi~s~~G~hIvkv~d  120 (122)
                            ||++++|||||+|.|
T Consensus        81 ------pi~t~~G~~Ii~v~d   95 (95)
T PF00639_consen   81 ------PIETDNGYHIIKVED   95 (95)
T ss_dssp             ------EEEETTEEEEEEEEE
T ss_pred             ------CEEECCEEEEEEEEC
Confidence                  999999999999986

2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....

>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

Probab=99.89  E-value=1.4e-22  Score=137.93  Aligned_cols=89  Identities=36%  Similarity=0.589  Sum_probs=80.8

Q ss_pred             CCceEEEEEEEecCH----------------------HHHHHHHHHhcCCC-CHHHHHHHhcch-hhhcCCcccceeCCC
Q psy6496          25 GGTAVKVRHILCEKQ----------------------SKVLEALEKLKSGV-KFPEVASQYSED-KARQGGDLGWMVRGS   80 (122)
Q Consensus        25 ~~~~v~v~~I~v~~~----------------------~~A~~i~~~l~~g~-sF~~la~~~S~d-~~~~gG~lG~~~~~~   80 (122)
                      .+++|+++||++...                      ..++.++++|++|. +|+++|++||.+ +..+||++||+....
T Consensus         2 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~~~~~~gG~lG~~~~~~   81 (115)
T PTZ00356          2 EGDTVRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIVSGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQ   81 (115)
T ss_pred             CCcEEEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCCchhhcCccceeEcccc
Confidence            478999999999731                      25788999999996 999999999987 467899999999999


Q ss_pred             CcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEe
Q psy6496          81 MVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE  119 (122)
Q Consensus        81 l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~  119 (122)
                      |||.|.+++++|++|++|+      ||+++.|||||+++
T Consensus        82 L~~~~~~a~~~L~~Geis~------Pi~t~~G~hIlk~~  114 (115)
T PTZ00356         82 MQKPFEDAAFALKVGEISD------IVHTDSGVHIILRL  114 (115)
T ss_pred             cCHHHHHHHHcCCCCCCCC------cEEECCEEEEEEEc
Confidence            9999999999999999998      99999999999986

>PRK03002 prsA peptidylprolyl isomerase; Reviewed

Probab=99.88  E-value=1.2e-22  Score=157.03  Aligned_cols=102  Identities=37%  Similarity=0.622  Sum_probs=94.4

Q ss_pred             ccccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhc
Q psy6496          14 KEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFK   91 (122)
Q Consensus        14 ~~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~   91 (122)
                      ..+|++.+.+.. ++++++||++++++.|+.++.+|++|.+|+++|++||.|+  ..+||++||+..+.|||.|.+++++
T Consensus       123 ~vtd~ei~~~Y~-~~~~~~~Ilv~~~~~A~~i~~~l~~G~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~  201 (285)
T PRK03002        123 SVTEKDVKDHYK-PEIKASHILVSDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYK  201 (285)
T ss_pred             CCCHHHHHHhhc-cceEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHc
Confidence            467777887776 5799999999999999999999999999999999999984  4689999999999999999999999


Q ss_pred             CCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          92 LPISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        92 l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      |++|++|+      ||++++|||||+|++++
T Consensus       202 L~~GevS~------pI~t~~G~hIikv~~~~  226 (285)
T PRK03002        202 LKVGQISN------PVKSPNGYHIIKLTDKK  226 (285)
T ss_pred             CCCCCcCC------cEEECCEEEEEEEeecC
Confidence            99999998      99999999999999875

>PRK02998 prsA peptidylprolyl isomerase; Reviewed

Probab=99.88  E-value=1.4e-22  Score=156.34  Aligned_cols=102  Identities=39%  Similarity=0.638  Sum_probs=93.7

Q ss_pred             ccccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhc
Q psy6496          14 KEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFK   91 (122)
Q Consensus        14 ~~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~   91 (122)
                      ..+|++.+++.. ++++++||++++++.|+.++.+|++|.+|+++|++||.++  ..+||++||+..+.+||.|.++++.
T Consensus       121 ~Vtd~ei~~~y~-~~~~v~~Ilv~~e~~A~~i~~~l~~G~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~  199 (283)
T PRK02998        121 TVTEKDVKDNYK-PEMKVSHILVKDEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYK  199 (283)
T ss_pred             CCCHHHHHHhcc-cceEEEEEEeCCHHHHHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHc
Confidence            456777777765 4799999999999999999999999999999999999985  4689999999999999999999999


Q ss_pred             CCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          92 LPISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        92 l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      |++|++|+      ||+++.|||||+|++++
T Consensus       200 Lk~GevS~------pi~t~~G~hIikv~~~~  224 (283)
T PRK02998        200 LDAGQVSE------PVKTTYGYHIIKVTDKK  224 (283)
T ss_pred             CCCCCcCC------ceEECCEEEEEEEeccC
Confidence            99999998      99999999999999874

>TIGR02933 nifM_nitrog nitrogen fixation protein NifM

Probab=99.88  E-value=1.7e-22  Score=154.02  Aligned_cols=101  Identities=28%  Similarity=0.502  Sum_probs=89.2

Q ss_pred             ccccccccCCCceEEEEEEEecC--------HHHHHHHHHHhcCC-CCHHHHHHHhcchh-hhcCCcccceeCCCCcHHH
Q psy6496          16 EDSSGKQKKGGTAVKVRHILCEK--------QSKVLEALEKLKSG-VKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEF   85 (122)
Q Consensus        16 ~~~~~~~~~~~~~v~v~~I~v~~--------~~~A~~i~~~l~~g-~sF~~la~~~S~d~-~~~gG~lG~~~~~~l~~~~   85 (122)
                      ++.+...|..+..++++||+++.        ...|..++.+|++| .+|+++|++||.++ +.+||++||++.+.|||.|
T Consensus       111 y~~~~~~~~~~e~~~~~hIli~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~sa~~GGdlG~~~~~~l~~~~  190 (256)
T TIGR02933       111 YRRHAEQFKRPEQRLTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGLLGWVSRGLLYPQL  190 (256)
T ss_pred             HHHHHHhcCCCCeEEEEEEEEECCcccHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCCccccCCccCCcCCCccChHH
Confidence            45667778888888999999974        23357788899887 69999999999984 6789999999999999999


Q ss_pred             HHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          86 QDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        86 ~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      .+++++|++|+||+      ||+|+.|||||+|.+++
T Consensus       191 ~~~l~~L~~G~vS~------Pi~s~~G~hIlkl~~~~  221 (256)
T TIGR02933       191 DAALFQLAEGELSP------PIESEIGWHLLLCEAIR  221 (256)
T ss_pred             HHHHHcCCCCCcCC------ceeeCCeEEEEEEeeec
Confidence            99999999999998      99999999999999875

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.

>PRK03095 prsA peptidylprolyl isomerase; Reviewed

Probab=99.88  E-value=2.1e-22  Score=155.74  Aligned_cols=101  Identities=43%  Similarity=0.683  Sum_probs=92.6

Q ss_pred             cccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhcC
Q psy6496          15 EEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFKL   92 (122)
Q Consensus        15 ~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~l   92 (122)
                      .+|++.+.+.. ++++++||+++++..|.+++.+|++|.+|+++|++||.++  ..+||++||++.+.|||.|.+++++|
T Consensus       120 vtd~ei~~~y~-~~v~~~hIlv~~~~~A~~i~~~l~~G~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L  198 (287)
T PRK03095        120 ITDKELKDNYK-PEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKL  198 (287)
T ss_pred             CCHHHHHhhhc-ccEEEEEEEeCCHHHHHHHHHHHHCCCCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhC
Confidence            45666777765 4699999999999999999999999999999999999985  46899999999999999999999999


Q ss_pred             CCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          93 PISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        93 ~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      ++|++|+      ||+++.|||||+|++++
T Consensus       199 ~~GevS~------pi~t~~G~hIikv~~~~  222 (287)
T PRK03095        199 KKDEVSE------PVKSQFGYHIIKVTDIK  222 (287)
T ss_pred             CCCCcCC------ceEECCEEEEEEEeeec
Confidence            9999998      99999999999999985

>PRK04405 prsA peptidylprolyl isomerase; Provisional

Probab=99.87  E-value=4.9e-22  Score=154.53  Aligned_cols=102  Identities=32%  Similarity=0.498  Sum_probs=88.5

Q ss_pred             cccccccccCC--CceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeC--CCCcHHHHHH
Q psy6496          15 EEDSSGKQKKG--GTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVR--GSMVGEFQDA   88 (122)
Q Consensus        15 ~~~~~~~~~~~--~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~--~~l~~~~~~a   88 (122)
                      .+|++.+.|..  +++|+++||++++++.|+.++++|++|++|+++|++||.|+  +.+||+|||+..  +.|||+|.++
T Consensus       129 Vtd~ei~~~y~~~~~~~~v~hIlv~~~~~A~~v~~~l~~G~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a  208 (298)
T PRK04405        129 VTNSQLKKAWKSYQPKVTVQHILVSKKSTAETVIKKLKDGKDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTA  208 (298)
T ss_pred             CCHHHHHHHHHHhhhhEEEEEEEecChHHHHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHH
Confidence            45555554322  46899999999999999999999999999999999999984  468999998854  6899999999


Q ss_pred             HhcCCCCccc-CCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          89 AFKLPISTVN-NPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        89 ~~~l~~G~vs-~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      +++|++|+++ +      ||++++|||||+|++++
T Consensus       209 ~~~L~~Geiss~------pv~t~~GyhIikv~~~~  237 (298)
T PRK04405        209 AFKLKNGEYTTT------PVKTTYGYEVIKMIKHP  237 (298)
T ss_pred             HHcCCCCCccCC------CEEeCCeEEEEEEeecC
Confidence            9999999995 7      99999999999999863

>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional

Probab=99.86  E-value=1.5e-21  Score=156.52  Aligned_cols=96  Identities=27%  Similarity=0.522  Sum_probs=88.0

Q ss_pred             cccCCCceEEEEEEEec------------CHHHHHHHHHHhcCCCCHHHHHHHhcchh-hhcCCcccceeCCCCcHHHHH
Q psy6496          21 KQKKGGTAVKVRHILCE------------KQSKVLEALEKLKSGVKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQD   87 (122)
Q Consensus        21 ~~~~~~~~v~v~~I~v~------------~~~~A~~i~~~l~~g~sF~~la~~~S~d~-~~~gG~lG~~~~~~l~~~~~~   87 (122)
                      ..+..+++++++||+++            .+..|++++.+|++|.+|+++|+.||+++ +.+||++||++.+.|||.|.+
T Consensus       148 ~~~~~~~~~~~~~I~i~~~~~~s~~~~~~~~~~a~~l~~~l~~g~~F~~lA~~yS~~~~a~~gGdlg~~~~~~l~~~~~~  227 (413)
T PRK10770        148 NQNDASTELNLSHILIPLPENPTQDQVDEAESQARSIVDQARNGADFGKLAIAYSADQQALKGGQMGWGRIQELPGLFAQ  227 (413)
T ss_pred             hhccccceEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCcccccCCcCCccccccccHHHHH
Confidence            34566889999999997            24668899999999999999999999985 679999999999999999999


Q ss_pred             HHhcCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          88 AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        88 a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      ++++|++|++|+      ||+++.|||||+|.++|
T Consensus       228 ~~~~l~~G~is~------Pi~t~~GyhIikl~~~~  256 (413)
T PRK10770        228 ALSTAKKGDIVG------PIRSGVGFHILKVNDLR  256 (413)
T ss_pred             HHHhCCCCCCCC------cEECCCceEEEEEeeec
Confidence            999999999998      99999999999999975

>PRK00059 prsA peptidylprolyl isomerase; Provisional

Probab=99.85  E-value=7.6e-21  Score=148.93  Aligned_cols=101  Identities=31%  Similarity=0.476  Sum_probs=92.3

Q ss_pred             ccccccccC-CCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeC--CCCcHHHHHHHh
Q psy6496          16 EDSSGKQKK-GGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVR--GSMVGEFQDAAF   90 (122)
Q Consensus        16 ~~~~~~~~~-~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~--~~l~~~~~~a~~   90 (122)
                      ++.+...|. .+++++++||++++++.|++++++|++|.+|+++|++||.++  ..+||++||++.  +.+||+|.++++
T Consensus       183 y~~~~~~~~~~p~~~~v~~I~~~~~~~a~~~~~~l~~g~~F~~la~~~s~~~~~~~~~g~lg~~~~~~~~l~~~~~~a~~  262 (336)
T PRK00059        183 YNENKSKFTEKPNTMHLAHILVKTEDEAKKVKKRLDKGEDFAKVAKEVSQDPGSKDKGGDLGDVPYSDSGYDKEFMDGAK  262 (336)
T ss_pred             HHHhhhhhcCCcceEEEEEEEecCHHHHHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcccccccccCccCHHHHHHHH
Confidence            445556675 688999999999999999999999999999999999999983  578999999998  789999999999


Q ss_pred             cCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          91 KLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        91 ~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      .|++|+||+      ||.+++|||||+|++++
T Consensus       263 ~l~~Gevs~------pi~~~~G~~i~~v~~~~  288 (336)
T PRK00059        263 ALKEGEISA------PVKTQFGYHIIKAIKKK  288 (336)
T ss_pred             cCCCCCcCc------cEecCCeEEEEEEEeec
Confidence            999999998      99999999999999875

>PRK12450 foldase protein PrsA; Reviewed

Probab=99.84  E-value=5.3e-21  Score=149.34  Aligned_cols=107  Identities=21%  Similarity=0.214  Sum_probs=91.3

Q ss_pred             cccccccccCC--CceEEEEEEEecCHHHHHHHHHHhc-CCCCHHHHHHHhcchhhhcCCcccceeC-CCCcHHHHHHHh
Q psy6496          15 EEDSSGKQKKG--GTAVKVRHILCEKQSKVLEALEKLK-SGVKFPEVASQYSEDKARQGGDLGWMVR-GSMVGEFQDAAF   90 (122)
Q Consensus        15 ~~~~~~~~~~~--~~~v~v~~I~v~~~~~A~~i~~~l~-~g~sF~~la~~~S~d~~~~gG~lG~~~~-~~l~~~~~~a~~   90 (122)
                      .+|++.+.|..  .++++++||++.+++.|+.++.+|+ .|++|+++|++||.++ ..||++||... +.|||+|.++++
T Consensus       133 Vtd~evk~~y~~~~~~~~~~~I~~~~~~~A~~i~~~l~~~G~dF~~lAk~~S~~~-~~~g~~~f~~~~~~l~~ef~~aa~  211 (309)
T PRK12450        133 ISKKDYRQAYDAYTPTMTAEIMQFEKEEDAKAALEAVKAEGADFAAIAKEKTIAA-DKKTTYTFDSGETTLPAEVVRAAS  211 (309)
T ss_pred             CCHHHHHHHHHHhCccceeEEEEeCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCc-ccCCcccccCCCCCCCHHHHHHHH
Confidence            45556554432  3589999999999999999999998 4999999999999874 46789998764 579999999999


Q ss_pred             cCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          91 KLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        91 ~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      .|++|++|+|+.+..|++|++|||||+|++++
T Consensus       212 ~Lk~GevS~~i~~~~pv~t~~GyhIikl~~~~  243 (309)
T PRK12450        212 GLKEGNRSEIITALDPATSKRTYHIIKVTKKA  243 (309)
T ss_pred             cCCCCCccccccCCCccccCCceEEEEEeccc
Confidence            99999999988776699999999999999874

>PRK01326 prsA foldase protein PrsA; Reviewed

Probab=99.82  E-value=2.8e-20  Score=145.26  Aligned_cols=89  Identities=22%  Similarity=0.337  Sum_probs=81.1

Q ss_pred             ceEEEEEEEecCHHHHHHHHHHhc-CCCCHHHHHHHhcchhhhcCCcccceeC-CCCcHHHHHHHhcCCCCcccCCCCCC
Q psy6496          27 TAVKVRHILCEKQSKVLEALEKLK-SGVKFPEVASQYSEDKARQGGDLGWMVR-GSMVGEFQDAAFKLPISTVNNPVYTE  104 (122)
Q Consensus        27 ~~v~v~~I~v~~~~~A~~i~~~l~-~g~sF~~la~~~S~d~~~~gG~lG~~~~-~~l~~~~~~a~~~l~~G~vs~~~~~~  104 (122)
                      ++++++||++.+++.|+.++.+|+ .|++|+++|++||. ++.+||++||++. ..||++|.+++++|++|+||+     
T Consensus       144 ~~~~~~~I~~~~~~~A~~i~~~l~~~G~dF~~lA~~~S~-s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~-----  217 (310)
T PRK01326        144 PEVTAQIIRLDNEDKAKSVLEEAKAEGADFAQIAKENTT-TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSD-----  217 (310)
T ss_pred             ccccchhhhHhhhHHHHHHHHHHHhCCCCHHHHHHHhCc-ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCC-----
Confidence            568999999999999999999999 59999999999998 6678999999987 479999999999999999999     


Q ss_pred             CCeee------CceEEEEEEeeeC
Q psy6496         105 PPIKT------KFGYHIIMVEGKK  122 (122)
Q Consensus       105 ~pi~s------~~G~hIvkv~drr  122 (122)
                       ||++      .+|||||+|.++|
T Consensus       218 -pv~t~~~~~~~~GyhIikv~~~~  240 (310)
T PRK01326        218 -VISVLDPTAYQSKYYIVKVTKKT  240 (310)
T ss_pred             -ceecCCCCcCCceEEEEEEeccC
Confidence             7765      7799999999875

>PRK10788 periplasmic folding chaperone; Provisional

Probab=99.81  E-value=7.3e-20  Score=153.66  Aligned_cols=101  Identities=25%  Similarity=0.423  Sum_probs=92.9

Q ss_pred             cccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcch--hhhcCCcccceeCCCCcHHHHHHHhcC
Q psy6496          15 EEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED--KARQGGDLGWMVRGSMVGEFQDAAFKL   92 (122)
Q Consensus        15 ~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d--~~~~gG~lG~~~~~~l~~~~~~a~~~l   92 (122)
                      .+++++.+|..+++++++||++++++.|++++.+|++|++|+++|++||.|  ++.+||+|||++.+.||++|.++++ +
T Consensus       257 ~y~~~~~~~~~~e~~~~~~i~~~~~~~A~~~~~~l~~G~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~  335 (623)
T PRK10788        257 YYDQHQDQFTQPERKRYSIIQTKTEAEAKAVLDELKKGADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGL-K  335 (623)
T ss_pred             HHHHHHHhcCChhheeeeEEEECCHHHHHHHHHHHhCCCCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhc-c
Confidence            456677788899999999999999999999999999999999999999998  4679999999999999999999988 6


Q ss_pred             CCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          93 PISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        93 ~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      ++|++|+      ||+++.|||||+|++++
T Consensus       336 ~~G~vs~------pv~t~~G~~Iikv~~~~  359 (623)
T PRK10788        336 EKGQLSG------VIKSSVGFLIVRLDDIQ  359 (623)
T ss_pred             CCCCcCC------cEEECCeEEEEEEEeec
Confidence            8899998      99999999999999875

>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional

Probab=99.80  E-value=9.7e-20  Score=146.13  Aligned_cols=92  Identities=34%  Similarity=0.629  Sum_probs=82.7

Q ss_pred             CCceEEEEEEEecC---------HHHHHHHHHHhcCCC-CHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhcC
Q psy6496          25 GGTAVKVRHILCEK---------QSKVLEALEKLKSGV-KFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFKL   92 (122)
Q Consensus        25 ~~~~v~v~~I~v~~---------~~~A~~i~~~l~~g~-sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~l   92 (122)
                      ..++++++||+++.         ...|.+++.+|.+|. +|+++|++||.|+  +.+||++||+..+.|+|+|.+++++|
T Consensus       263 ~~~e~~~~hIli~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~~A~~~S~d~~s~~~gG~lg~~~~~~~~~~~~~~~~~l  342 (413)
T PRK10770        263 SVTEVHARHILLKPSPIMTDEQARAKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALMRL  342 (413)
T ss_pred             hHHhhhhhheEECCCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCCChHhhCCcCCccCccccCHHHHHHHHcC
Confidence            45679999999973         245678899999995 9999999999984  67899999999999999999999999


Q ss_pred             CCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          93 PISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        93 ~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      ++|++|.      ||.++.|||||+|+++|
T Consensus       343 ~~GeiS~------pv~t~~g~~ii~v~~~~  366 (413)
T PRK10770        343 NKGQISA------PVHSSFGWHLIELLDTR  366 (413)
T ss_pred             CCCCcCC------cEEcCCeEEEEEEeecc
Confidence            9999998      99999999999999975

>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family

Probab=99.80  E-value=1.8e-19  Score=134.62  Aligned_cols=101  Identities=7%  Similarity=-0.019  Sum_probs=90.4

Q ss_pred             cccccccccCCCceEEEEEEEecC-HHHHHHHHHHhcCCCCHHHHHHHhcchhhhcCCcccceeCCCCcHHHHHHHhcCC
Q psy6496          15 EEDSSGKQKKGGTAVKVRHILCEK-QSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLP   93 (122)
Q Consensus        15 ~~~~~~~~~~~~~~v~v~~I~v~~-~~~A~~i~~~l~~g~sF~~la~~~S~d~~~~gG~lG~~~~~~l~~~~~~a~~~l~   93 (122)
                      -++++...|..+++|+++||+++. ++.|+++++++++|.+|++++..++......+|.+||++.++|||+|.+++++|+
T Consensus       125 ~Y~~~~~~f~~~~~~~~~hIlv~~~~~~a~~~~~~l~~g~~f~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~l~  204 (232)
T TIGR02925       125 YFQEHPQLFAERKLYNLQEIALPPDMELLDELRAMVENGKPLEDILAWLKAKNVPFNASSAARPAEQLPAEILAVLAKLK  204 (232)
T ss_pred             HHHhCHHhcCCCceEEEEEEEecCChhHHHHHHHHHhcCCCHHHHHHHhhhcCcccccccccCchhhCCHHHHHHHHhCC
Confidence            467788889999999999999975 4568999999999999999999987654456788999999999999999999999


Q ss_pred             CCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          94 ISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        94 ~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      +|+|+       ||+|.+||||++|.+++
T Consensus       205 ~G~is-------~v~s~~G~hiikv~~~~  226 (232)
T TIGR02925       205 PGAPL-------VVQGPNNVLILVLADAQ  226 (232)
T ss_pred             CCCeE-------EeecCCceEEEEEeccc
Confidence            99998       79999999999999875

Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.

>KOG3259|consensus

Probab=99.73  E-value=1.3e-17  Score=116.79  Aligned_cols=90  Identities=37%  Similarity=0.571  Sum_probs=77.6

Q ss_pred             cCCCceEEEEEEEecC-----------------HHHH----HHHHHHhcCCC-CHHHHHHHhcch-hhhcCCcccceeCC
Q psy6496          23 KKGGTAVKVRHILCEK-----------------QSKV----LEALEKLKSGV-KFPEVASQYSED-KARQGGDLGWMVRG   79 (122)
Q Consensus        23 ~~~~~~v~v~~I~v~~-----------------~~~A----~~i~~~l~~g~-sF~~la~~~S~d-~~~~gG~lG~~~~~   79 (122)
                      -..+++|+.+||||+-                 ++.|    +.+.+.|+.|. +|.+||+++|++ ++..||||||+..+
T Consensus        49 ~~~p~~Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrg  128 (163)
T KOG3259|consen   49 QGEPARVRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRG  128 (163)
T ss_pred             CCCccceeEEEEEEccccCCCCcccccccchhhHHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCcccccccc
Confidence            3457899999999972                 3444    45556677774 999999999998 57899999999999


Q ss_pred             CCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEE
Q psy6496          80 SMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMV  118 (122)
Q Consensus        80 ~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv  118 (122)
                      +|-..|.++.|+|++|++|+      ||.|+.|+|||+=
T Consensus       129 qMqk~FEdaafaL~~ge~Sg------iV~t~SG~HiI~R  161 (163)
T KOG3259|consen  129 QMQKPFEDAAFALKVGEMSG------IVDTDSGVHIIYR  161 (163)
T ss_pred             cccccchhhhhhcccccccC------ceecCCceEEEEe
Confidence            99999999999999999999      9999999999974

>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=7e-16  Score=116.16  Aligned_cols=92  Identities=49%  Similarity=0.784  Sum_probs=83.7

Q ss_pred             CCceEEEEEEEecCHHHHHHHHHHhcCC-----CCHHHHHHHhcchh-hh-cCCcccceeCCCCcHHHHHHHhcCCCCcc
Q psy6496          25 GGTAVKVRHILCEKQSKVLEALEKLKSG-----VKFPEVASQYSEDK-AR-QGGDLGWMVRGSMVGEFQDAAFKLPISTV   97 (122)
Q Consensus        25 ~~~~v~v~~I~v~~~~~A~~i~~~l~~g-----~sF~~la~~~S~d~-~~-~gG~lG~~~~~~l~~~~~~a~~~l~~G~v   97 (122)
                      ..++++.+||+++.+..|.+++..++.+     .+|+++|++||.++ .. .||++||...+.++|+|..+++.+++|++
T Consensus       165 ~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g~~  244 (320)
T COG0760         165 KVTEVQARHILVKAEAKAKEALALLKKGVREAKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGEV  244 (320)
T ss_pred             HHHHHhhcccccCchHhHHHHHHHHHhccccccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCccc
Confidence            3589999999999999999999988877     79999999999985 33 47788889999999999999999999999


Q ss_pred             cCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          98 NNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        98 s~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      +.      ||++.+||||++|+++|
T Consensus       245 ~~------pv~t~~g~~ii~v~~~~  263 (320)
T COG0760         245 SA------PVKTSFGYHIIKVEKKR  263 (320)
T ss_pred             cc------ccccchHHHHHHHHhhh
Confidence            98      99999999999998875

>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A

Probab=99.18  E-value=9.2e-12  Score=82.63  Aligned_cols=99  Identities=24%  Similarity=0.324  Sum_probs=70.7

Q ss_pred             ccccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCC--CCHHHHHHHhcchhhhcCCcccceeCC-CCcHHHHHHHh
Q psy6496          14 KEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSG--VKFPEVASQYSEDKARQGGDLGWMVRG-SMVGEFQDAAF   90 (122)
Q Consensus        14 ~~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g--~sF~~la~~~S~d~~~~gG~lG~~~~~-~l~~~~~~a~~   90 (122)
                      +-++.++..|..+..+.+.+++++++..+......++.+  .+|..++..++..    ..+++|.... .|++.|.++++
T Consensus         8 ~yY~~n~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~   83 (121)
T PF13145_consen    8 AYYEENKDRFSQPERRIFQIIFFKAEDAAEAAKALAKKKAGEDFAALAKKYSID----QSDLGIFTDESDLPPEFADALF   83 (121)
T ss_dssp             HHHHH-HHHH--EEEEEEEEEEESSCCHHHHHHHHHHHHCHHHHHHHHHCTHCC----CCCCCCCETTHHH-HHHHCCHT
T ss_pred             HHHHHHHHHhCCcccEEEEEEEeCCHHHHHHHHHHHhhcccchHHHHHHhcCCc----cccccccccccccCHHHHHHHh
Confidence            457788999999999888888888766555555555443  4677777665543    3445566654 68999999999


Q ss_pred             cCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          91 KLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        91 ~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      .|++|++|+      ||.+.+|||||+|.+++
T Consensus        84 ~l~~g~~s~------~i~~~~~~~v~~v~~~~  109 (121)
T PF13145_consen   84 KLKPGEVSG------PIESGNGYYVVKVKERN  109 (121)
T ss_dssp             T-STT-EEE------EEEETTEEEEEEEEEEE
T ss_pred             cCCCCCeee------eEEECCEEEEEEEEeec
Confidence            999999998      99999999999998863

>PRK10788 periplasmic folding chaperone; Provisional

Probab=94.42  E-value=0.2  Score=42.65  Aligned_cols=69  Identities=20%  Similarity=0.207  Sum_probs=46.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHhcchhhhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCCCeee-----CceEEEE
Q psy6496          42 VLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKT-----KFGYHII  116 (122)
Q Consensus        42 A~~i~~~l~~g~sF~~la~~~S~d~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s-----~~G~hIv  116 (122)
                      |++++.+|++|.+.+ +++.  .  ...-...+++++..++|.+..++|.++.|..+.      |+..     ..||.|+
T Consensus       505 a~~ll~~l~~g~~~~-~~~~--~--~~~~~~~~~~~r~~~~~~~~~~~F~~~~~~~~~------~~~~~~~~~~~~~~v~  573 (623)
T PRK10788        505 AEKLLAALKAGKGEE-AMKA--A--GLSFGEPKTLSRTSQDDPLSQAAFALPLPAKDK------PSYGMAQDMQGNVVLI  573 (623)
T ss_pred             HHHHHHHHhcCCchh-hhHh--c--CCccccccceecCCCChHHHHHHhcCCCCCCCC------CeeEEEEcCCCCEEEE
Confidence            566777788886542 3221  1  111122356776667778999999999988887      5533     5789999


Q ss_pred             EEeee
Q psy6496         117 MVEGK  121 (122)
Q Consensus       117 kv~dr  121 (122)
                      +|.++
T Consensus       574 ~v~~v  578 (623)
T PRK10788        574 ALDEV  578 (623)
T ss_pred             EEccc
Confidence            99865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
3ui4_A	101	0.8 A Resolution Crystal Structure Of Human Parvuli		2e-41
1fjd_A	104	Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMER		2e-41
1eq3_A	96	Nmr Structure Of Human Parvulin Hpar14 Length = 96		2e-41
2rqs_A	97	3d Structure Of Pin From The Psychrophilic Archeon		4e-14
1zk6_A	93	Nmr Solution Structure Of B. Subtilis Prsa Ppiase L		3e-13
3rfw_A	252	The Virulence Factor Peb4 And The Periplasmic Prote		1e-11
1jns_A	92	Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRA		4e-09
4g2p_A	110	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		4e-07
1nmw_A	114	Solution Structure Of The Ppiase Domain Of Human Pi		5e-07
3ik8_A	123	Structure-Based Design Of Novel Pin1 Inhibitors (I)		6e-07
3kac_A	123	Structure-Guided Design Of Alpha-Amino Acid-Derived		6e-07
3kad_A	167	Structure-Guided Design Of Alpha-Amino Acid-Derived		6e-07
2zqu_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		9e-07
2zqv_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-06
2zr4_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-06
2zr6_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-06
1pin_A	163	Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo		1e-06
3tcz_A	158	Human Pin1 Bound To Cis Peptidomimetic Inhibitor Le		1e-06
2zr5_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-06
2f21_A	162	Human Pin1 Fip Mutant Length = 162		1e-06
2zqs_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		1e-06
3tc5_A	166	Selective Targeting Of Disease-Relevant Protein Bin		1e-06
2itk_A	167	Human Pin1 Bound To D-Peptide Length = 167		1e-06
1f8a_B	167	Structural Basis For The Phosphoserine-Proline Reco		1e-06
1zcn_A	161	Human Pin1 Ng Mutant Length = 161		1e-06
2zqt_A	163	Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl		6e-06
1m5y_A	408	Crystallographic Structure Of Sura, A Molecular Cha		2e-05
2jzv_A	111	Solution Structure Of S. Aureus Prsa-Ppiase Length		2e-05
1yw5_A	177	Peptidyl-Prolyl Isomerase Ess1 From Candida Albican		4e-05
1j6y_A	139	Solution Structure Of Pin1at From Arabidopsis Thali		7e-05
2lj4_A	115	Solution Structure Of The Tbpin1 Length = 115		2e-04

>pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14 Length = 101

Iteration: 1
 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 73/96 (76%), Positives = 87/96 (90%)
Query: 27  TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQ 86
            AVKVRHILCEK  K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ
Sbjct: 6   NAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQ 65
Query: 87  DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           +AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 66  EAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 101

>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE, Hpar14 Length = 104

Iteration: 1
 Score =  163 bits (413), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 73/96 (76%), Positives = 87/96 (90%)
Query: 27  TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQ 86
            AVKVRHILCEK  K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ
Sbjct: 9   NAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQ 68
Query: 87  DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           +AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 69  EAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 104

>pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14 Length = 96

Iteration: 1
 Score =  163 bits (413), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 73/95 (76%), Positives = 87/95 (91%)
Query: 28  AVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQD 87
           AVKVRHILCEK  K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ+
Sbjct: 2   AVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQE 61
Query: 88  AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 62  AAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96

>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon Cenarcheaum Symbiosum (Cspin) Length = 97

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Query: 29  VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED--KARQGGDLGWMVRGSMVGEFQ 86
           +K  HIL +KQ + L   E+LK+G KF ++A + S D   A++ G LG+  RG MV  F+
Sbjct: 10  IKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFE 69
Query: 87  DAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
           DAAF+L +  V+ PV      K++FGYH+I
Sbjct: 70  DAAFRLQVGEVSEPV------KSEFGYHVI 93

>pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase Length = 93

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 29  VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMVR-GSMVGEFQ 86
           ++  HIL   +    E  +KLK G KF ++A +YS D  A +GGDLGW  + G M   F 
Sbjct: 5   IRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFS 64
Query: 87  DAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
            AAFKL    V++PV      KT++GYHII
Sbjct: 65  KAAFKLKTGEVSDPV------KTQYGYHII 88

>pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein Cj1289 Are Two Structurally-Related Sura-Like Chaperones In The Human Pathogen Campylobacter Jejuni Length = 252

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 13/100 (13%)
Query: 29  VKVRHIL--CEKQSK-VLEALEKLKS---GVKFPEVASQYSED--KARQGGDLGWMVRGS 80
           V+ +HIL   EK++K ++  L+ LK      KF E+A + S D     QGG+LGW  + +
Sbjct: 113 VQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQST 172
Query: 81  MVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120
           MV  F DAAF L   T+     T  P+KT FGYH+I+ E 
Sbjct: 173 MVKPFTDAAFALKNGTI-----TTTPVKTNFGYHVILKEN 207

>pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS- Isomerase Parvulin 10 Length = 92

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 33  HILCEKQSKVLEALEKLKSGVKFPEVASQYS-EDKARQGGDLGWMVRGSMVGEFQDAAFK 91
           HIL +++   L+ LE++K+G  F ++A ++S     ++GGDLG   +G MV  F    F 
Sbjct: 8   HILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFS 67
Query: 92  LPISTVNNPVYTEPPIKTKFGYHIIMV 118
            P+     P++T+      FGYHII V
Sbjct: 68  CPVLEPTGPLHTQ------FGYHIIKV 88

>pdb|4G2P|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Domain Ii Of Molecular Chaperone Sura From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s Length = 110

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 18/102 (17%)
Query: 27  TAVKVRHILC---------EKQSKVLEALEKLKSG-VKFPEVASQYSED--KARQGGDLG 74
           T V  RHIL          + + K+ E    +KSG   F   A +YS+D   A QGGDLG
Sbjct: 7   TEVHARHILLKPSPIXNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLG 66
Query: 75  WMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
           W         F+DA  KL    ++ PV++       FG+H+I
Sbjct: 67  WATPDIFDPAFRDALTKLHKGQISAPVHSS------FGWHLI 102

>pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1 Length = 114

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 44  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 103
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 104 DS------GIHIIL 111

>pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I) Length = 123

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 53  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 112
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 113 DS------GIHIIL 120

>pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inhibitors Length = 123

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 53  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 112
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 113 DS------GIHIIL 120

>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1 Inhibitors Length = 167

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 97  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMAKPFEDASFALRTGEMSGPVFT 156
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 157 DS------GIHIIL 164

>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 93  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 153 DS------GIHIIL 160

>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 93  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 153 DS------GIHIIL 160

>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 93  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 153 DS------GIHIIL 160

>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 93  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 153 DS------GIHIIL 160

>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens Length = 163

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 93  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 153 DS------GIHIIL 160

>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor Length = 158

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 88  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 147
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 148 DS------GIHIIL 155

>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 93  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 153 DS------GIHIIL 160

>pdb|2F21|A Chain A, Human Pin1 Fip Mutant Length = 162

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 92  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 151
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 152 DS------GIHIIL 159

>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 93  IQKIKSGEEDFESLASQFSDASSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 153 DS------GIHIIL 160

>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding Domains By O- Phosphorylated Natural Product Derivatives Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 96  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 155
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 156 DS------GIHIIL 163

>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide Length = 167

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 97  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 156
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 157 DS------GIHIIL 164

>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition By Group Iv Ww Domains Length = 167

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 97  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 156
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 157 DS------GIHIIL 164

>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant Length = 161

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ PV+T
Sbjct: 91  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFT 150
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 151 DS------GIHIIL 158

>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl Cis-Trans Isomerase Length = 163

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 8/74 (10%)
Query: 46  LEKLKSGVK-FPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           ++K+KSG + F  +ASQ+S+   A+  GDLG   RG     F+DA+F L    ++ PV+T
Sbjct: 93  IQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQAQKPFEDASFALRTGEMSGPVFT 152
Query: 104 EPPIKTKFGYHIIM 117
           +       G HII+
Sbjct: 153 DS------GIHIIL 160

>pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone That Facilitates Outer Membrane Porin Folding Length = 408

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 22/104 (21%)
Query: 27  TAVKVRHIL-------CEKQSKVLEALEKLKSGVK-----FPEVASQYSED--KARQGGD 72
           T V  RHIL        ++Q++V   LE++ + +K     F   A ++S+D   A QGGD
Sbjct: 263 TEVHARHILLKPSPIMTDEQARV--KLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGD 320
Query: 73  LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 116
           LGW         F+DA  +L      N      P+ + FG+H+I
Sbjct: 321 LGWATPDIFDPAFRDALTRL------NKGQMSAPVHSSFGWHLI 358

>pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase Length = 111

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 54  KFPEVASQYSED--KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKF 111
           KF E+A + S D   A++ G+LG++++G    +F+ A FKL    V+  V      K+ F
Sbjct: 49  KFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVV------KSSF 102
Query: 112 GYHIIMVE 119
           GYHII  +
Sbjct: 103 GYHIIKAD 110

>pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans Length = 177

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 46  LEKLKSG-VKFPEVASQYSEDKAR-QGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYT 103
           LE++ SG VK  E+A+  S+  +  +GGDLG+  +G M   F++AAF L +  V+N    
Sbjct: 107 LERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSN---- 162
Query: 104 EPPIKTKFGYHIIMVEG 120
              I+T  G HI+   G
Sbjct: 163 --IIETNSGVHILQRTG 177

>pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana Length = 139

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 34  ILCEKQSKVLEALEKLKSGV-----KFPEVASQYSE-DKARQGGDLGWMVRGSMVGEFQD 87
           IL   +   +E L+ ++  +      F EVA++ S+   A++GGDLG   RG M   F++
Sbjct: 53  ILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEE 112
Query: 88  AAFKLPISTVNNPVYTEPPIKTKFGYHII 116
           A + L +  +++ V T+       G HII
Sbjct: 113 ATYALKVGDISDIVDTDS------GVHII 135

>pdb|2LJ4|A Chain A, Solution Structure Of The Tbpin1 Length = 115

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 47  EKLKSG-VKFPEVASQYSEDKA-RQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTE 104
           +++ SG V F E ASQ S+  +   GGDLG+   G M+  F+DA   L I  ++      
Sbjct: 46  QRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSGEMMKPFEDAVRALKIGDIS------ 99
Query: 105 PPIKTKFGYHII 116
           P ++T  G HII
Sbjct: 100 PIVQTDSGLHII 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	7e-47
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	1e-32
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	3e-31
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	2e-29
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	9e-29
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	2e-28
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	9e-28
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	8e-27
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	6e-25
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	6e-25
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	4e-23
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	6e-23
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	7e-23
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	3e-22
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	9e-16
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	2e-14
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	1e-15
3rgc_A	252	Possible periplasmic protein; ppiase, chaperone; 2	3e-07
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} PDB: 3ui5_A 1fjd_A 1eq3_A Length = 101

 Score =  145 bits (368), Expect = 7e-47
 Identities = 74/100 (74%), Positives = 88/100 (88%)

Query: 23  KKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMV 82
             G  AVKVRHILCEK  K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMV
Sbjct: 2   PMGSNAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMV 61

Query: 83  GEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           G FQ+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 62  GPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 101

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum} Length = 97

 Score =  109 bits (275), Expect = 1e-32
 Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 8/103 (7%)

Query: 20  GKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMV 77
           G        +K  HIL +KQ + L   E+LK+G KF ++A + S D   A++ G LG+  
Sbjct: 1   GPMGSMADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFG 60

Query: 78  RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 120
           RG MV  F+DAAF+L +  V+ PV      K++FGYH+I   G
Sbjct: 61  RGKMVKPFEDAAFRLQVGEVSEPV------KSEFGYHVIKRLG 97

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A Length = 92

 Score =  105 bits (264), Expect = 3e-31
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 29  VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMVRGSMVGEFQD 87
               HIL +++   L+ LE++K+G  F ++A ++S     ++GGDLG   +G MV  F  
Sbjct: 4   AAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDK 63

Query: 88  AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 121
             F  P+     P+       T+FGYHII V  +
Sbjct: 64  VVFSCPVLEPTGPL------HTQFGYHIIKVLYR 91

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} Length = 93

 Score =  101 bits (253), Expect = 2e-29
 Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 8/99 (8%)

Query: 25  GGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK-ARQGGDLGWMVR-GSMV 82
           G   ++  HIL   +    E  +KLK G KF ++A +YS D  A +GGDLGW  + G M 
Sbjct: 1   GSGKIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMD 60

Query: 83  GEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 121
             F  AAFKL    V++PV      KT++GYHII    +
Sbjct: 61  ETFSKAAFKLKTGEVSDPV------KTQYGYHIIKKTEE 93

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} Length = 102

 Score = 99.6 bits (249), Expect = 9e-29
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 29  VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQ 86
            +   I  + + +    L++L  G  F  +A + S D   AR GGD+GW+   ++  E +
Sbjct: 6   TRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELK 65

Query: 87  DAAFKLP--ISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           +A  K    +S           IK+  G+ I+ ++  +
Sbjct: 66  NAGLKEKGQLSG---------VIKSSVGFLIVRLDDIQ 94

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans} Length = 112

 Score = 99.3 bits (248), Expect = 2e-28
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 25  GGTAVKVRHIL--------CEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGW 75
           G    ++  I          +  +   + +E+LK G  F   A QYSE   A  GGDLGW
Sbjct: 4   GTEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGW 63

Query: 76  MVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           +    +  E    A  +    +  PV      + + G+ I+ +  K+
Sbjct: 64  IRLAQLPTELATTAASMGPGQLAGPV------EIRGGFSILYLIDKR 104

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp} Length = 110

 Score = 97.3 bits (243), Expect = 9e-28
 Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 18/113 (15%)

Query: 22  QKKGGTAVKVRHILC---------EKQSKVLEALEKLKSG-VKFPEVASQYSEDK--ARQ 69
                T V  RHIL          + + K+ E    +KSG   F   A +YS+D   A Q
Sbjct: 2   NAISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQ 61

Query: 70  GGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           GGDLGW         F+DA  KL    ++ PV       + FG+H+I +   +
Sbjct: 62  GGDLGWATPDIFDPAFRDALTKLHKGQISAPV------HSSFGWHLIELLDTR 108

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A Length = 103

 Score = 94.7 bits (236), Expect = 8e-27
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 19/109 (17%)

Query: 27  TAVKVRHIL------------CEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDL 73
           T + + HIL             E +S+    +++ ++G  F ++A  +S D +A  GG +
Sbjct: 1   TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQM 60

Query: 74  GWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           GW     + G F  A        +  P+      ++  G+HI+ V   +
Sbjct: 61  GWGRIQELPGIFAQALSTAKKGDIVGPI------RSGVGFHILKVNDLR 103

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni} Length = 252

 Score = 93.7 bits (233), Expect = 6e-25
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 13/110 (11%)

Query: 21  KQKKGGTAVKVRHILCEKQSKVLEALEKLK------SGVKFPEVASQYSEDK--ARQGGD 72
            +      V+ +HIL   + +  + + +LK         KF E+A + S D     QGG+
Sbjct: 105 DKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGE 164

Query: 73  LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           LGW  + +MV  F DAAF L   T+     T  P+KT FGYH+I+ E  +
Sbjct: 165 LGWFDQSTMVKPFTDAAFALKNGTI-----TTTPVKTNFGYHVILKENSQ 209

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} Length = 111

 Score = 90.0 bits (224), Expect = 6e-25
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 24/109 (22%)

Query: 29  VKVRHILC---------------EKQSKVLEALEKLKSG-VKFPEVASQYSEDK--ARQG 70
            K  HIL                E + K  E  +++     KF E+A + S D   A++ 
Sbjct: 8   KKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKD 67

Query: 71  GDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 119
           G+LG++++G    +F+ A FKL    V+  V      K+ FGYHII  +
Sbjct: 68  GELGYVLKGQTDKDFEKALFKLKDGEVSEVV------KSSFGYHIIKAD 110

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A Length = 123

 Score = 85.9 bits (213), Expect = 4e-23
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 29/114 (25%)

Query: 29  VKVRHILC---------------------EKQSKVLEALEKLKSG-VKFPEVASQYSEDK 66
           V+  H+L                      E    +   ++K+KSG   F  +ASQ+S+  
Sbjct: 15  VRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCS 74

Query: 67  -ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 119
            A+  GDLG   RG M   F+DA+F L    ++ PV       T  G HII+  
Sbjct: 75  SAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPV------FTDSGIHIILRT 122

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Length = 177

 Score = 86.8 bits (215), Expect = 6e-23
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 30/133 (22%)

Query: 12  KDKEEDSSGKQKKGGTAVKVRHILC----------------------EKQSKVLEALEKL 49
              + +           V+V H+L                       E    + + LE++
Sbjct: 51  AKFKNNGYKPLVNEDGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERI 110

Query: 50  KSG-VKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPI 107
            SG VK  E+A+  S+     +GGDLG+  +G M   F++AAF L +  V+N +      
Sbjct: 111 LSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNII------ 164

Query: 108 KTKFGYHIIMVEG 120
           +T  G HI+   G
Sbjct: 165 ETNSGVHILQRTG 177

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1 Length = 139

 Score = 85.6 bits (212), Expect = 7e-23
 Identities = 32/136 (23%), Positives = 47/136 (34%), Gaps = 33/136 (24%)

Query: 12  KDKEEDSSGKQKKGGTAVKVRHILC-------------------------EKQSKVLEAL 46
                   G        VK  HIL                              ++    
Sbjct: 10  HSSGLVPRGSHMASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIR 69

Query: 47  EKLKSG-VKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTE 104
           E + SG   F EVA++ S+   A++GGDLG   RG M   F++A + L +  +++ V   
Sbjct: 70  EDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIV--- 126

Query: 105 PPIKTKFGYHIIMVEG 120
               T  G HII    
Sbjct: 127 ---DTDSGVHIIKRTA 139

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Length = 166

 Score = 84.9 bits (210), Expect = 3e-22
 Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 33/140 (23%)

Query: 7   SGKSSKDKEEDSSGKQKKGGTA----VKVRHILC---------------------EKQSK 41
           +  S  ++   +S    K G      V+  H+L                      E    
Sbjct: 32  TNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALEL 91

Query: 42  VLEALEKLKSG-VKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNN 99
           +   ++K+KSG   F  +ASQ+S+   A+  GDLG   RG M   F+DA+F L    ++ 
Sbjct: 92  INGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSG 151

Query: 100 PVYTEPPIKTKFGYHIIMVE 119
           PV       T  G HII+  
Sbjct: 152 PV------FTDSGIHIILRT 165

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408

 Score = 70.9 bits (173), Expect = 9e-16
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 19/116 (16%)

Query: 20  GKQKKGGTAVKVRHILC------------EKQSKVLEALEKLKSGVKFPEVASQYSED-K 66
           G Q    T + + HIL             E +S+    +++ ++G  F ++A  +S D +
Sbjct: 145 GNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQ 204

Query: 67  ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           A  GG +GW     + G F  A        +        PI++  G+HI+ V   +
Sbjct: 205 ALNGGQMGWGRIQELPGIFAQALSTAKKGDIV------GPIRSGVGFHILKVNDLR 254

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408

 Score = 67.0 bits (163), Expect = 2e-14
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 18/120 (15%)

Query: 15  EEDSSGKQKKGGTAVKVRHILC---------EKQSKVLEALEKLKSG-VKFPEVASQYSE 64
            +     +    T V  RHIL          + + K+ +    +KSG   F   A ++S+
Sbjct: 251 NDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQ 310

Query: 65  DK--ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           D   A QGGDLGW         F+DA  +L    ++       P+ + FG+H+I +   +
Sbjct: 311 DPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMS------APVHSSFGWHLIELLDTR 364

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid} Length = 325

 Score = 70.0 bits (171), Expect = 1e-15
 Identities = 16/118 (13%), Positives = 39/118 (33%), Gaps = 23/118 (19%)

Query: 22  QKKGGTAVKVRHILC-------EKQSKVLEALEK-----LKSGVKFPEVASQYSEDK--A 67
           + K G  ++ R I         ++++++ + + +     L     F  +A     D    
Sbjct: 153 KDKVGFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALR 212

Query: 68  RQGGDLGWMVRGSMVGEFQ---DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
            + G + W+    +    +     A  LP   V+         + +   + I+    K
Sbjct: 213 ARRGMVEWISSFDLYKYSKITATIAAPLPNGGVS------EVFRDERKRYCILKIEGK 264

>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni} Length = 252

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 22/110 (20%)

Query: 13  DKEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGD 72
            K  + +  +    T +     L    S   + LE +K+  K                  
Sbjct: 120 KKFFEQNKDKFTFYTQINANIYL----SNNPQTLENIKNTKKT------------ILKPQ 163

Query: 73  LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
              +   +          ++P+ + +      P +  K GY +  V+ K 
Sbjct: 164 NASLNTSNADPRLLGLLSQIPVGSFS------PVLNGKNGYELYEVKSKD 207

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 11/31 (35%)

Query: 37 EKQSKVLEALEKLKSGVKFPEVASQYSEDKA 67
          EKQ+     L+KL++ +K       Y++D A
Sbjct: 18 EKQA-----LKKLQASLKL------YADDSA 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	99.97
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	99.96
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	99.95
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	99.95
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	99.95
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	99.95
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	99.95
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	99.95
2lj4_A	115	Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT;	99.94
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	99.94
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	99.94
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	99.93
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	99.92
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	99.91
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	99.9
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	99.85
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	99.83
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	99.79
3rgc_A	252	Possible periplasmic protein; ppiase, chaperone; 2	99.7

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A

Probab=99.97  E-value=1e-30  Score=173.48  Aligned_cols=97  Identities=75%  Similarity=1.282  Sum_probs=93.2

Q ss_pred             CceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchhhhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCC
Q psy6496          26 GTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEP  105 (122)
Q Consensus        26 ~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~  105 (122)
                      .++|+++||+++++++|++++++|++|++|++||++||.|++.+||+|||++.++|+|+|.+++++|++|++|+|+.+..
T Consensus         5 ~~~v~~~~Ilv~~~~~A~~i~~~l~~G~~F~~lA~~~S~d~a~~GGdlG~~~~~~l~~~f~~a~~~l~~G~vs~~~~~~~   84 (101)
T 3ui4_A            5 SNAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDP   84 (101)
T ss_dssp             GCEEEEEEEEESSHHHHHHHHHHHHTTCCHHHHHHHHCSSSGGGTTEEEEEETTSSCHHHHHHHHTSCCCBTTBCCBCSS
T ss_pred             CcEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHhCcCchhcCCceeeEcCCCCCHHHHHHHHhCCCCCCccCcccCC
Confidence            57999999999999999999999999999999999999998889999999999999999999999999999998887777


Q ss_pred             CeeeCceEEEEEEeeeC
Q psy6496         106 PIKTKFGYHIIMVEGKK  122 (122)
Q Consensus       106 pi~s~~G~hIvkv~drr  122 (122)
                      ||+|++|||||+|++||
T Consensus        85 pv~t~~G~hIikv~~rk  101 (101)
T 3ui4_A           85 PVKTKFGYHIIMVEGRK  101 (101)
T ss_dssp             CEEETTEEEEEEEEEEC
T ss_pred             cEEECCEEEEEEEEeeC
Confidence            99999999999999997

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A

Probab=99.96  E-value=7.5e-29  Score=161.45  Aligned_cols=90  Identities=34%  Similarity=0.606  Sum_probs=86.5

Q ss_pred             ceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcch-hhhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCC
Q psy6496          27 TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEP  105 (122)
Q Consensus        27 ~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d-~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~  105 (122)
                      ++++++||+++++++|++++.+|++|++|+++|++||.+ ++.+||+|||++.++|+|+|.+++++|++|++|+      
T Consensus         2 ~~~~~~hIl~~~~~~A~~i~~~l~~g~~F~~lA~~~S~~~s~~~gGdlg~~~~~~l~~~f~~a~~~l~~G~is~------   75 (92)
T 1jns_A            2 KTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTG------   75 (92)
T ss_dssp             CEEEEEEEEESSHHHHHHHHHHHHHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEE------
T ss_pred             CEEEEEEEEeCCHHHHHHHHHHHHCCCCHHHHHHHhCCCcchhcCCeeeEEcCcccCHHHHHHHHhCCCCCcCC------
Confidence            589999999999999999999999999999999999998 4679999999999999999999999999999998      


Q ss_pred             CeeeCceEEEEEEeeeC
Q psy6496         106 PIKTKFGYHIIMVEGKK  122 (122)
Q Consensus       106 pi~s~~G~hIvkv~drr  122 (122)
                      ||+|++|||||+|+++|
T Consensus        76 pv~t~~G~hIi~v~~~r   92 (92)
T 1jns_A           76 PLHTQFGYHIIKVLYRN   92 (92)
T ss_dssp             EEEETTEEEEEEEECCC
T ss_pred             cEEECCEEEEEEEEeeC
Confidence            99999999999999987

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}

Probab=99.95  E-value=7.4e-28  Score=158.21  Aligned_cols=93  Identities=42%  Similarity=0.722  Sum_probs=87.7

Q ss_pred             ccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcch--hhhcCCcccceeCCCCcHHHHHHHhcCCCCcccC
Q psy6496          22 QKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED--KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNN   99 (122)
Q Consensus        22 ~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d--~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~   99 (122)
                      -++.+++++++||+++++++|++++.+|++|++|+++|++||.|  ++.+||++||++.++|+|+|.+++++|++|+||+
T Consensus         3 ~~~~~~~~~~~hIl~~~~~~A~~i~~~l~~g~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~l~~G~is~   82 (97)
T 2rqs_A            3 MGSMADKIKCSHILVKKQGEALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSE   82 (97)
T ss_dssp             SCCCCCSEEEEEEEESCHHHHHHHHHHHTTTCCHHHHHHHTCCCCGGGGGTTEEEEECTTSSCHHHHHHHTTCTTSCBCC
T ss_pred             cccccceEEEEEEEeCCHHHHHHHHHHHHCCCCHHHHHHHhCCCCcchhcCceeeeEcCCCCCHHHHHHHHcCCCCCccc
Confidence            36678999999999999999999999999999999999999965  4789999999999999999999999999999998


Q ss_pred             CCCCCCCeeeCceEEEEEEee
Q psy6496         100 PVYTEPPIKTKFGYHIIMVEG  120 (122)
Q Consensus       100 ~~~~~~pi~s~~G~hIvkv~d  120 (122)
                            ||+|++|||||+|.+
T Consensus        83 ------pv~t~~G~hIi~v~d   97 (97)
T 2rqs_A           83 ------PVKSEFGYHVIKRLG   97 (97)
T ss_dssp             ------CEECSSCEEEEEECC
T ss_pred             ------cEEECCEEEEEEEeC
Confidence                  999999999999975

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}

Probab=99.95  E-value=3.3e-28  Score=164.25  Aligned_cols=92  Identities=27%  Similarity=0.487  Sum_probs=85.6

Q ss_pred             CCceEEEEEEEecCH--------HHHHHHHHHhcCCCCHHHHHHHhcch-hhhcCCcccceeCCCCcHHHHHHHhcCCCC
Q psy6496          25 GGTAVKVRHILCEKQ--------SKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMVRGSMVGEFQDAAFKLPIS   95 (122)
Q Consensus        25 ~~~~v~v~~I~v~~~--------~~A~~i~~~l~~g~sF~~la~~~S~d-~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G   95 (122)
                      .+++|+++||+|++.        ++|++++.+|++|++|++||++||.| ++.+||+|||++.++|+|+|.+++++|++|
T Consensus         4 ~~~~~~v~hIli~~~~~~~~~a~~~A~~i~~~l~~G~~F~~lA~~~S~d~sa~~GGdlG~~~~~~l~~~f~~a~~~l~~G   83 (112)
T 3gpk_A            4 GTEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASMGPG   83 (112)
T ss_dssp             -CCEEEEEEEEEECCGGGHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHHHHCCTT
T ss_pred             CCcEEEEEEEEEeCChhhHHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCcchhcCcccceEcccccCHHHHHHHHhCCCC
Confidence            468999999999853        67899999999999999999999998 478999999999999999999999999999


Q ss_pred             cccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          96 TVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        96 ~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      +||+      ||+|++|||||+|.++|
T Consensus        84 eiS~------pv~t~~G~hIikv~~~~  104 (112)
T 3gpk_A           84 QLAG------PVEIRGGFSILYLIDKR  104 (112)
T ss_dssp             CEEE------EEEETTEEEEEEEEEEE
T ss_pred             Cccc------eEEECCEEEEEEEEeEe
Confidence            9998      99999999999999985

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}

Probab=99.95  E-value=7.7e-28  Score=161.67  Aligned_cols=93  Identities=37%  Similarity=0.607  Sum_probs=85.8

Q ss_pred             CCCceEEEEEEEecC---------HHHHHHHHHHhcCCC-CHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhc
Q psy6496          24 KGGTAVKVRHILCEK---------QSKVLEALEKLKSGV-KFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFK   91 (122)
Q Consensus        24 ~~~~~v~v~~I~v~~---------~~~A~~i~~~l~~g~-sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~   91 (122)
                      ...++|+++||+++.         +.+|++++.+|++|. +|++||++||.|+  +.+||+|||+..+.|+|+|.+++++
T Consensus         4 ~~~~~v~~~hIli~~~~~~~~~~a~~~a~~i~~~l~~G~~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~   83 (110)
T 4g2p_A            4 ISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTK   83 (110)
T ss_dssp             CCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHT
T ss_pred             ccccEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCccccccccccCeecccccCHHHHHHHHc
Confidence            456899999999973         456789999999998 9999999999984  6799999999999999999999999


Q ss_pred             CCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          92 LPISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        92 l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      |++|+||+      ||+|++|||||+|+++|
T Consensus        84 l~~Geis~------pv~t~~G~hIikv~~~r  108 (110)
T 4g2p_A           84 LHKGQISA------PVHSSFGWHLIELLDTR  108 (110)
T ss_dssp             CCTTCBCC------CEEETTEEEEEEEEEEE
T ss_pred             CCCCCcCc------cEEECCEEEEEEEEEEe
Confidence            99999998      99999999999999986

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}

Probab=99.95  E-value=1.1e-27  Score=155.98  Aligned_cols=89  Identities=43%  Similarity=0.764  Sum_probs=84.7

Q ss_pred             CceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcch-hhhcCCccccee-CCCCcHHHHHHHhcCCCCcccCCCCC
Q psy6496          26 GTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMV-RGSMVGEFQDAAFKLPISTVNNPVYT  103 (122)
Q Consensus        26 ~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d-~~~~gG~lG~~~-~~~l~~~~~~a~~~l~~G~vs~~~~~  103 (122)
                      +++++++||+++++++|++++.+|++|++|+++|++||.| ++.+||+|||++ .+.|+|+|.+++++|++|+||+    
T Consensus         2 ~~~~~~~hIl~~~~~~A~~i~~~l~~g~~F~~lA~~~S~~~s~~~gG~lg~~~~~~~l~~~f~~a~~~l~~G~is~----   77 (93)
T 1zk6_A            2 SGKIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSD----   77 (93)
T ss_dssp             -CCEEEEEEEESSHHHHHHHHHHHHHTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSCTTHHHHHHHSCTTCBCC----
T ss_pred             CCEEEEEEEEeccHHHHHHHHHHHHCCCCHHHHHHHhCCCchhhhCCeeeeecccccCCHHHHHHHHcCCCCCccc----
Confidence            4789999999999999999999999999999999999998 478999999999 9999999999999999999998    


Q ss_pred             CCCeeeCceEEEEEEee
Q psy6496         104 EPPIKTKFGYHIIMVEG  120 (122)
Q Consensus       104 ~~pi~s~~G~hIvkv~d  120 (122)
                        ||++++|||||+|.+
T Consensus        78 --pv~t~~G~hIi~v~~   92 (93)
T 1zk6_A           78 --PVKTQYGYHIIKKTE   92 (93)
T ss_dssp             --CEECSSCEEEEEEEE
T ss_pred             --eEEECCEEEEEEEec
Confidence              999999999999986

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A

Probab=99.95  E-value=1.8e-27  Score=157.61  Aligned_cols=90  Identities=27%  Similarity=0.489  Sum_probs=83.7

Q ss_pred             ceEEEEEEEecC------------HHHHHHHHHHhcCCCCHHHHHHHhcch-hhhcCCcccceeCCCCcHHHHHHHhcCC
Q psy6496          27 TAVKVRHILCEK------------QSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMVRGSMVGEFQDAAFKLP   93 (122)
Q Consensus        27 ~~v~v~~I~v~~------------~~~A~~i~~~l~~g~sF~~la~~~S~d-~~~~gG~lG~~~~~~l~~~~~~a~~~l~   93 (122)
                      ++|+++||+++.            +..|++++.+|++|.+|+++|++||.| ++.+||+|||++.+.|+|+|.+++++|+
T Consensus         1 ~~~~~~hIli~~~~~~~~~~~~~a~~~a~~i~~~l~~g~~F~~lA~~~S~~~s~~~gG~lg~~~~~~l~~~f~~a~~~l~   80 (103)
T 2pv1_A            1 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAK   80 (103)
T ss_dssp             CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHTTTCC
T ss_pred             CcEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCcccccCCccceEchhhcCHHHHHHHHcCC
Confidence            369999999962            466899999999999999999999998 4689999999999999999999999999


Q ss_pred             CCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          94 ISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        94 ~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      +|+||+      ||+|++|||||+|+++|
T Consensus        81 ~G~is~------pv~t~~G~hii~v~~~r  103 (103)
T 2pv1_A           81 KGDIVG------PIRSGVGFHILKVNDLR  103 (103)
T ss_dssp             TTCEEE------EEEETTEEEEEEEEEEC
T ss_pred             CCCeec------cEEECCEEEEEEEEEEC
Confidence            999998      99999999999999987

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A

Probab=99.95  E-value=4.5e-27  Score=161.05  Aligned_cols=95  Identities=35%  Similarity=0.554  Sum_probs=80.7

Q ss_pred             ccccCCCceEEEEEEEec-----------------CHHHHH----HHHHHhcCC-CCHHHHHHHhcch-hhhcCCcccce
Q psy6496          20 GKQKKGGTAVKVRHILCE-----------------KQSKVL----EALEKLKSG-VKFPEVASQYSED-KARQGGDLGWM   76 (122)
Q Consensus        20 ~~~~~~~~~v~v~~I~v~-----------------~~~~A~----~i~~~l~~g-~sF~~la~~~S~d-~~~~gG~lG~~   76 (122)
                      +.+|..+++|+++||+|+                 ++++|+    +++.+|++| .+|++||++||++ ++.+||+|||+
T Consensus         6 ~~~~~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~~sa~~GGdLG~~   85 (123)
T 3i6c_A            6 KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAF   85 (123)
T ss_dssp             -----CCSEEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEE
T ss_pred             ccccCCCcEEEEEEEEEecCCccCccccchhhhhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCchhhhCCceeeE
Confidence            348899999999999997                 234454    445688899 6999999999987 47899999999


Q ss_pred             eCCCCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEee
Q psy6496          77 VRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG  120 (122)
Q Consensus        77 ~~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~d  120 (122)
                      ..++|+|+|.+++|+|++|+||+      ||+|++|||||+|++
T Consensus        86 ~~~~l~~~f~~a~f~l~~GeiS~------pv~t~~G~hIi~v~E  123 (123)
T 3i6c_A           86 SRGQMQKPFEDASFALRTGEMSG------PVFTDSGIHIILRTE  123 (123)
T ss_dssp             ETTTSCHHHHHHHHHSCTTCBCS------CEEETTEEEEEEECC
T ss_pred             cCCCCCHHHHHHHHhCCCCCccc------cEEECCEEEEEEEeC
Confidence            99999999999999999999998      999999999999975

>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}

Probab=99.94  E-value=8.8e-27  Score=157.81  Aligned_cols=89  Identities=30%  Similarity=0.444  Sum_probs=80.7

Q ss_pred             CCceEEEEEEEecC-----------------------HHHHHHHHHHhcCCC-CHHHHHHHhcch-hhhcCCcccceeCC
Q psy6496          25 GGTAVKVRHILCEK-----------------------QSKVLEALEKLKSGV-KFPEVASQYSED-KARQGGDLGWMVRG   79 (122)
Q Consensus        25 ~~~~v~v~~I~v~~-----------------------~~~A~~i~~~l~~g~-sF~~la~~~S~d-~~~~gG~lG~~~~~   79 (122)
                      .+++|+++||+|+.                       ...|++++.+|++|. +|+++|++||++ ++.+||+|||+..+
T Consensus         1 ~pe~vrasHILi~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~sa~~GGdLG~~~~~   80 (115)
T 2lj4_A            1 MSEKLRAAHLLVKFSGSRNPVSRRTGDSTADVTYEDAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSG   80 (115)
T ss_dssp             CCCEEEEEEEEECCTTSSCCCCTTTSSCCTTSCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGTTSEEEEEETT
T ss_pred             CCCcEEEEEEEEecCCccChhhhhhccccccccHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCcccccCCccceecCC
Confidence            37899999999951                       245788999999995 999999999987 57899999999999


Q ss_pred             CCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEe
Q psy6496          80 SMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE  119 (122)
Q Consensus        80 ~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~  119 (122)
                      +|+|+|.+++++|++|+||+      ||+|++|||||+|+
T Consensus        81 ~~~~~f~~a~~~l~~GeiS~------pv~t~~G~HIIkl~  114 (115)
T 2lj4_A           81 EMMKPFEDAVRALKIGDISP------IVQTDSGLHIIKRL  114 (115)
T ss_dssp             SSCHHHHHHHTTSCBTCBCC------CEECSSSEEEEEEC
T ss_pred             CCCchHHHHHhcCCCCCCCC------cEEeCCeEEEEEEe
Confidence            99999999999999999998      99999999999986

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}

Probab=99.94  E-value=4e-26  Score=153.01  Aligned_cols=90  Identities=34%  Similarity=0.596  Sum_probs=83.7

Q ss_pred             CCceEEEEEEEec---------------CHHHHHHHHHHhcCC-CCHHHHHHHhcchh--hhcCCcccceeCCCCcHHHH
Q psy6496          25 GGTAVKVRHILCE---------------KQSKVLEALEKLKSG-VKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQ   86 (122)
Q Consensus        25 ~~~~v~v~~I~v~---------------~~~~A~~i~~~l~~g-~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~   86 (122)
                      .+++|+++||+++               ++++|++++.+|++| .+|+++|++||.|+  +.+||+|||+..+.|+++|.
T Consensus         4 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~lA~~~S~d~~s~~~gG~lG~~~~~~l~~~f~   83 (111)
T 2jzv_A            4 GSDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFE   83 (111)
T ss_dssp             CCSEEEEEEEEEEBCSCSSCSSSBCHHHHHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEEETTSSCHHHH
T ss_pred             CCcEEEEEEEEEECCCCCChhhhhhHHHHHHHHHHHHHHHHcCcccHHHHHHHHCCCcchhhhCCccceecCCcccHHHH
Confidence            4689999999997               456789999999999 89999999999984  67899999999999999999


Q ss_pred             HHHhcCCCCcccCCCCCCCCeeeCceEEEEEEee
Q psy6496          87 DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG  120 (122)
Q Consensus        87 ~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~d  120 (122)
                      +++++|++|+||+      ||+|++|||||+|++
T Consensus        84 ~a~~~l~~G~is~------pv~t~~G~hIi~v~~  111 (111)
T 2jzv_A           84 KALFKLKDGEVSE------VVKSSFGYHIIKADK  111 (111)
T ss_dssp             HHHHTCCTTCBCC------CEEETTEEEEEEECC
T ss_pred             HHHHhCCCCCcCc------cEEECCEEEEEEEeC
Confidence            9999999999998      999999999999974

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}

Probab=99.94  E-value=1e-26  Score=154.29  Aligned_cols=89  Identities=25%  Similarity=0.512  Sum_probs=84.5

Q ss_pred             ceEEEEEEEe--cCHHHHHHHHHHhcCCCCHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCC
Q psy6496          27 TAVKVRHILC--EKQSKVLEALEKLKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVY  102 (122)
Q Consensus        27 ~~v~v~~I~v--~~~~~A~~i~~~l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~  102 (122)
                      ++++++||++  .++++|++++.+|++|++|++||++||.|+  +.+||+|||++.+.|+|+|.+++++ ++|+||+   
T Consensus         2 ~~~~~~hIl~~~~~~~~A~~i~~~l~~G~~F~~lA~~~S~d~~sa~~GGdlG~~~~~~l~~~f~~a~~~-~~GeiS~---   77 (102)
T 2kgj_A            2 QPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLK-EKGQLSG---   77 (102)
T ss_dssp             CCCEEEEEEEEESSHHHHHHHHHHHHHTSCHHHHHHHTCTTHHHHTTTSEEEEEETTCCCHHHHTTCCC-STTCEEE---
T ss_pred             CEEEEEeeecChhhHHHHHHHHHHHHCCCCHHHHHHHhCCCchhhhcCCccceecccccCHHHHHHHhc-CCCCccc---
Confidence            5799999999  789999999999999999999999999985  6799999999999999999999999 9999998   


Q ss_pred             CCCCeeeCceEEEEEEeeeC
Q psy6496         103 TEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus       103 ~~~pi~s~~G~hIvkv~drr  122 (122)
                         ||+|++|||||+|.+++
T Consensus        78 ---pv~t~~G~hIikv~~~~   94 (102)
T 2kgj_A           78 ---VIKSSVGFLIVRLDDIQ   94 (102)
T ss_dssp             ---EEEETTEEEEEEEEEEE
T ss_pred             ---cEEECCEEEEEEEeecc
Confidence               99999999999999875

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=99.93  E-value=2.1e-25  Score=159.66  Aligned_cols=94  Identities=35%  Similarity=0.579  Sum_probs=80.9

Q ss_pred             cccCCCceEEEEEEEec-----------------CHHHHHHHH----HHhcCC-CCHHHHHHHhcch-hhhcCCccccee
Q psy6496          21 KQKKGGTAVKVRHILCE-----------------KQSKVLEAL----EKLKSG-VKFPEVASQYSED-KARQGGDLGWMV   77 (122)
Q Consensus        21 ~~~~~~~~v~v~~I~v~-----------------~~~~A~~i~----~~l~~g-~sF~~la~~~S~d-~~~~gG~lG~~~   77 (122)
                      ..+..+++|+++||+|+                 ++++|++++    .+|++| .+|++||++||++ ++.+||+|||+.
T Consensus        50 ~~~~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~~g~~~F~~lA~~~Sd~~sa~~GGdLG~~~  129 (166)
T 3tc5_A           50 NGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFS  129 (166)
T ss_dssp             ----CCSCEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEEC
T ss_pred             cccccccceeEeeeEEecccccCccccchhhhhhHHHHHHHHHHHHHHHHHcCccCHHHHHHHhCcccHHhcCCccceec
Confidence            35667899999999998                 345565554    588889 6999999999987 578999999999


Q ss_pred             CCCCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEee
Q psy6496          78 RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG  120 (122)
Q Consensus        78 ~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~d  120 (122)
                      .++|+++|.+++|+|++|+||+      ||+|++|||||+|++
T Consensus       130 ~~~l~~~f~~a~f~l~~GeiS~------pv~t~~G~hIi~v~e  166 (166)
T 3tc5_A          130 RGQMQKPFEDASFALRTGEMSG------PVFTDSGIHIILRTE  166 (166)
T ss_dssp             TTSSCHHHHHHHHHSCTTCBCC------CEEETTEEEEEEECC
T ss_pred             ccccCHHHHHHHHhCCCCCCcc------cEEECCEEEEEEEeC
Confidence            9999999999999999999998      999999999999975

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1

Probab=99.92  E-value=7.7e-26  Score=157.64  Aligned_cols=99  Identities=32%  Similarity=0.494  Sum_probs=84.1

Q ss_pred             cccccccccCCCceEEEEEEEecCH-------------------------HHHHHHHHHhcCCC-CHHHHHHHhcch-hh
Q psy6496          15 EEDSSGKQKKGGTAVKVRHILCEKQ-------------------------SKVLEALEKLKSGV-KFPEVASQYSED-KA   67 (122)
Q Consensus        15 ~~~~~~~~~~~~~~v~v~~I~v~~~-------------------------~~A~~i~~~l~~g~-sF~~la~~~S~d-~~   67 (122)
                      -++++...|..+++|+++||+|+..                         +.|++++.+|++|. +|++||++||.+ ++
T Consensus        13 ~~~~~~~~f~~~~~v~~~HILi~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~a~~i~~~l~~G~~~F~~lA~~~S~~~sa   92 (139)
T 1j6y_A           13 GLVPRGSHMASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSA   92 (139)
T ss_dssp             -------CCSSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHHHH
T ss_pred             hHHHhHHHcCCCCeEEEEEEEEecCccccccccccccccccchHHHHHHHHHHHHHHHHHHcCcccHHHHHHHhccCchh
Confidence            3678899999999999999999731                         23568899999998 799999999997 47


Q ss_pred             hcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEe
Q psy6496          68 RQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE  119 (122)
Q Consensus        68 ~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~  119 (122)
                      .+||+|||+..++|+|+|.+++++|++|+||+      ||+|++|||||+|+
T Consensus        93 ~~GGdLG~~~~~~l~~~f~~a~~~l~~GeiS~------pv~t~~G~hIikv~  138 (139)
T 1j6y_A           93 KRGGDLGSFGRGQMQKPFEEATYALKVGDISD------IVDTDSGVHIIKRT  138 (139)
T ss_dssp             HTCSEEEECSSSSSCTHHHHHHHHCCSSSCCS------CEEETTEEECCCSC
T ss_pred             hcCCeeeeecccccCHHHHHHHHcCCCCCccc------cEEECCEEEEEEEe
Confidence            89999999999999999999999999999998      99999999999986

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=99.91  E-value=1.4e-24  Score=156.43  Aligned_cols=99  Identities=32%  Similarity=0.519  Sum_probs=86.6

Q ss_pred             cccccccc-----CCCceEEEEEEEecC------------------HHHH----HHHHHHhcCCC-CHHHHHHHhcch-h
Q psy6496          16 EDSSGKQK-----KGGTAVKVRHILCEK------------------QSKV----LEALEKLKSGV-KFPEVASQYSED-K   66 (122)
Q Consensus        16 ~~~~~~~~-----~~~~~v~v~~I~v~~------------------~~~A----~~i~~~l~~g~-sF~~la~~~S~d-~   66 (122)
                      ++++..+|     ..+++++++||+|+.                  ++.|    +.++.+|++|. +|++||++||.| +
T Consensus        50 y~~~~~~~~~~~~~~~~~~~~~hIlv~~~~~~~p~~~~~~~~~~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~~s  129 (177)
T 1yw5_A           50 IAKFKNNGYKPLVNEDGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTESDCSS  129 (177)
T ss_dssp             HHHHHHTTSCCCCCTTSCEEEEEEEECCTTSSSCCBTTBTTCCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGG
T ss_pred             HHHhHhhhcccccCCcceEEEEEEEEecCCccCcccccccccchhHHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCcc
Confidence            45566677     688999999999974                  3444    55678889997 899999999998 4


Q ss_pred             hhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEee
Q psy6496          67 ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG  120 (122)
Q Consensus        67 ~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~d  120 (122)
                      +.+||+|||+..++|+++|.+++|+|++|+||+      ||+|++|||||+|++
T Consensus       130 a~~GGdLG~~~~~~l~~~f~~a~f~L~~GeiS~------pv~t~~G~hIikv~~  177 (177)
T 1yw5_A          130 HDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSN------IIETNSGVHILQRTG  177 (177)
T ss_dssp             GGGTTEEEEECTTSSCHHHHHHHHTSCTTCBCC------CEEETTEEEEEEECC
T ss_pred             hhcCCccceecccccCHHHHHHHHcCCCCCcCC------eEEECCEEEEEEEeC
Confidence            789999999999999999999999999999998      999999999999974

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}

Probab=99.90  E-value=5.9e-24  Score=159.22  Aligned_cols=103  Identities=37%  Similarity=0.645  Sum_probs=94.0

Q ss_pred             ccccccccccCCCceEEEEEEEecCHHHHHHHHHHhc--CC----CCHHHHHHHhcchh--hhcCCcccceeCCCCcHHH
Q psy6496          14 KEEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLK--SG----VKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEF   85 (122)
Q Consensus        14 ~~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~--~g----~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~   85 (122)
                      +-++++...|..+++++++||++++++.|++++.+|+  +|    .+|+++|++||.|+  ..+||++||++.++|+|+|
T Consensus        98 ~~Y~~~~~~f~~~~~~~~~~I~~~~~~~A~~~~~~l~~~~g~~~~~~F~~lA~~~S~~~~~~~~gGdlg~~~~~~l~~~f  177 (252)
T 3rfw_A           98 AFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPF  177 (252)
T ss_dssp             HHHHHHGGGSEECCEEEEEEEEESSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCTTTGGGTTEEEEECSSSSCHHH
T ss_pred             HHHHHhHHhccccceEEEEEEEeCCHHHHHHHHHHHHhhcCCCccccHHHHHHHhCCCCchhhcCCcccccccccccHHH
Confidence            3466778889999999999999999999999999999  45    49999999999985  3469999999999999999


Q ss_pred             HHHHhcCCCCccc-CCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          86 QDAAFKLPISTVN-NPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        86 ~~a~~~l~~G~vs-~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      .+++++|++|++| .      ||+|++|||||+|++++
T Consensus       178 ~~a~~~l~~G~is~~------pv~t~~G~hii~v~~~~  209 (252)
T 3rfw_A          178 TDAAFALKNGTITTT------PVKTNFGYHVILKENSQ  209 (252)
T ss_dssp             HHHHHHSCTTEECSS------CEEETTEEEEEEEEEEE
T ss_pred             HHHHHcCCCCCccCc------eEEECCEEEEEEEEEec
Confidence            9999999999999 7      99999999999999874

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}

Probab=99.85  E-value=4e-22  Score=154.61  Aligned_cols=91  Identities=22%  Similarity=0.293  Sum_probs=84.5

Q ss_pred             CceEEEEEEEe-----------cCHHHHHHHHHH-hcCCCCHHHHHHHhcchh--hhcCCcccceeCCCCc---HHHHHH
Q psy6496          26 GTAVKVRHILC-----------EKQSKVLEALEK-LKSGVKFPEVASQYSEDK--ARQGGDLGWMVRGSMV---GEFQDA   88 (122)
Q Consensus        26 ~~~v~v~~I~v-----------~~~~~A~~i~~~-l~~g~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~---~~~~~a   88 (122)
                      +..++++||++           .+++.|++++.+ |++|.+|+++|++||.|+  +.+||++||++.+.|+   |+|.++
T Consensus       157 ~~~~~~~~Ili~~~~~~~~~~~~~~~~a~~i~~~~l~~g~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~~~~a  236 (325)
T 3nrk_A          157 GFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATI  236 (325)
T ss_dssp             CEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSTTSCHHHHHTTTEEEEEEHHHHHHHCHHHHHH
T ss_pred             CcceEEEEEEEecCCCCccchHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCccccccCCcccccccccccccCHHHHHH
Confidence            56799999999           567789999999 999999999999999984  4799999999999999   999999


Q ss_pred             HhcCCCCcccCCCCCCCCeeeCc-eEEEEEEeeeC
Q psy6496          89 AFKLPISTVNNPVYTEPPIKTKF-GYHIIMVEGKK  122 (122)
Q Consensus        89 ~~~l~~G~vs~~~~~~~pi~s~~-G~hIvkv~drr  122 (122)
                      +++|++|+||+      ||++++ |||||+|++++
T Consensus       237 ~~~l~~Geis~------pv~t~~~G~hIikv~~~~  265 (325)
T 3nrk_A          237 AAPLPNGGVSE------VFRDERKRYCILKIEGKR  265 (325)
T ss_dssp             HTTCCTTCBCC------CEECTTSCEEEEEEEEEE
T ss_pred             HHcCCCCCCCc------eEEeCCCeEEEEEEeccC
Confidence            99999999998      999999 99999999874

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A

Probab=99.83  E-value=8.5e-21  Score=149.65  Aligned_cols=102  Identities=25%  Similarity=0.463  Sum_probs=87.0

Q ss_pred             cccccccccCCCceEEEEEEEecC------------HHHHHHHHHHhcCCCCHHHHHHHhcchh-hhcCCcccceeCCCC
Q psy6496          15 EEDSSGKQKKGGTAVKVRHILCEK------------QSKVLEALEKLKSGVKFPEVASQYSEDK-ARQGGDLGWMVRGSM   81 (122)
Q Consensus        15 ~~~~~~~~~~~~~~v~v~~I~v~~------------~~~A~~i~~~l~~g~sF~~la~~~S~d~-~~~gG~lG~~~~~~l   81 (122)
                      -++.+..+|..+++++++||+++.            +..|++++.+|++|.+|+++|+.||.++ +.+||++||++.+.|
T Consensus       140 ~y~~~~~~~~~~~~~~~~~i~i~~~~~~s~~~~~~~~~~a~~~~~~l~~g~~F~~lA~~~S~~~~~~~gG~lg~~~~~~l  219 (408)
T 1m5y_A          140 LAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQEL  219 (408)
T ss_dssp             HHHCC-------CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGS
T ss_pred             HHHhhhhhcCCcccEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHcCCCcccccCCcccccchhhc
Confidence            355667788899999999999962            4568899999999999999999999984 679999999999999


Q ss_pred             cHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          82 VGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        82 ~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      ||.|.++++.|++|++|+      ||++++||||++|.+++
T Consensus       220 ~~~~~~~~~~l~~G~vs~------pv~~~~g~~iikv~~~~  254 (408)
T 1m5y_A          220 PGIFAQALSTAKKGDIVG------PIRSGVGFHILKVNDLR  254 (408)
T ss_dssp             CHHHHTGGGTCCTTCEEE------EEEETTEEEEEEEEEEC
T ss_pred             cHHHHHHHHhCCCCCccC------eeecCCeEEEEEEEEec
Confidence            999999999999999998      99999999999999875

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A

Probab=99.79  E-value=5.4e-19  Score=139.33  Aligned_cols=95  Identities=33%  Similarity=0.586  Sum_probs=85.3

Q ss_pred             ccCCCceEEEEEEEecC---------HHHHHHHHHHhcCCC-CHHHHHHHhcch--hhhcCCcccceeCCCCcHHHHHHH
Q psy6496          22 QKKGGTAVKVRHILCEK---------QSKVLEALEKLKSGV-KFPEVASQYSED--KARQGGDLGWMVRGSMVGEFQDAA   89 (122)
Q Consensus        22 ~~~~~~~v~v~~I~v~~---------~~~A~~i~~~l~~g~-sF~~la~~~S~d--~~~~gG~lG~~~~~~l~~~~~~a~   89 (122)
                      .....++++++||++..         .+.|.+++.+|++|. +|+++|++||.+  ++.+||++||++.+.++|+|.+++
T Consensus       258 ~~~~~~~~~~~~Il~~~~~~~~~~~a~~~a~~~~~~l~~g~~~f~~~A~~~s~~~~s~~~gg~lg~~~~~~~~~~~~~a~  337 (408)
T 1m5y_A          258 KNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDAL  337 (408)
T ss_dssp             CCCCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHH
T ss_pred             CcccccchhhheeeecCCCCcCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCcchhhcCCcCcccCcccchHHHHHHH
Confidence            34456889999999973         355788999999998 999999999998  467899999999999999999999


Q ss_pred             hcCCCCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          90 FKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        90 ~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      |+|++|++|+      ||++++|||||+|++++
T Consensus       338 f~l~~G~~s~------~v~~~~g~~ii~v~~~~  364 (408)
T 1m5y_A          338 TRLNKGQMSA------PVHSSFGWHLIELLDTR  364 (408)
T ss_dssp             HTCCTTCBCC------CEECSSCEEEEEEEEEE
T ss_pred             HcCCCCCccC------cEeeCCeEEEEEEeeec
Confidence            9999999998      99999999999999874

>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}

Probab=99.70  E-value=1.3e-17  Score=124.57  Aligned_cols=86  Identities=14%  Similarity=0.118  Sum_probs=76.0

Q ss_pred             cccccccccCCCceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchhhhcCCcccceeCCCCcHHHHHHHhcCCC
Q psy6496          15 EEDSSGKQKKGGTAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPI   94 (122)
Q Consensus        15 ~~~~~~~~~~~~~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~~~~gG~lG~~~~~~l~~~~~~a~~~l~~   94 (122)
                      -++++..+|..+++|+++||++.+++    ++.+|++|.+|+            .+|++||++.+.|||+|.+++++|++
T Consensus       122 yy~~~~~~f~~~~~v~~~~i~~~~~~----~~~~l~~g~~f~------------l~g~lg~~~~~~l~~~~~~a~~~l~~  185 (252)
T 3rgc_A          122 FFEQNKDKFTFYTQINANIYLSNNPQ----TLENIKNTKKTI------------LKPQNASLNTSNADPRLLGLLSQIPV  185 (252)
T ss_dssp             HHHTCGGGCCEESEEEEEEEECSCHH----HHHHHHHHCCCC------------SCCEEEEEETTTSCHHHHHHHHHSCT
T ss_pred             HHHhCHHhcCCCceEEEEEecCCCHH----HHHHHHhCCCcc------------cccccceecHHhcCHHHHHHHHcCCC
Confidence            46778888999999999999998754    456677788886            26899999999999999999999999


Q ss_pred             CcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          95 STVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        95 G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      |++|+      ||++++|||||+|++++
T Consensus       186 G~is~------pv~t~~G~hiikv~~~~  207 (252)
T 3rgc_A          186 GSFSP------VLNGKNGYELYEVKSKD  207 (252)
T ss_dssp             TCBCC------CBTTTTCEEEEEEEECS
T ss_pred             CCcCC------cEEeCCeEEEEEEeccc
Confidence            99998      99999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1eq3a_	96	d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar	2e-31
d1jnsa_	92	d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichi	7e-19
d1m5ya3	108	d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase	8e-13
d2pv2a1	103	d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase	1e-11
d1j6ya_	120	d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Tha	7e-11
d1pina2	119	d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain	9e-11

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-31
 Identities = 73/95 (76%), Positives = 87/95 (91%)

Query: 28  AVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQD 87
           AVKVRHILCEK  K++EA+EKLKSG++F EVA+QYSEDKARQGGDLGWM RGSMVG FQ+
Sbjct: 2   AVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQE 61

Query: 88  AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+K
Sbjct: 62  AAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]} Length = 92

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

 Score = 73.1 bits (179), Expect = 7e-19
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 29  VKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQG-GDLGWMVRGSMVGEFQD 87
               HIL +++   L+ LE++K+G  F ++A ++S   + +  GDLG   +G MV  F  
Sbjct: 4   AAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDK 63

Query: 88  AAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 121
             F  P+     P+       T+FGYHII V  +
Sbjct: 64  VVFSCPVLEPTGPL------HTQFGYHIIKVLYR 91

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

 Score = 57.8 bits (139), Expect = 8e-13
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 18/108 (16%)

Query: 27  TAVKVRHILC---------EKQSKVLEALEKLKSG-VKFPEVASQYSEDK--ARQGGDLG 74
           T V  RHIL          + + K+ +    +KSG   F   A ++S+D   A QGGDLG
Sbjct: 5   TEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLG 64

Query: 75  WMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           W         F+DA  +L    ++ PV       + FG+H+I +   +
Sbjct: 65  WATPDIFDPAFRDALTRLNKGQMSAPV------HSSFGWHLIELLDTR 106

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 103

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

 Score = 54.8 bits (131), Expect = 1e-11
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 19/109 (17%)

Query: 27  TAVKVRHIL------------CEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGD-L 73
           T + + HIL             E +S+    +++ ++G  F ++A  +S D+    G  +
Sbjct: 1   TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQM 60

Query: 74  GWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKK 122
           GW     + G F  A        +        PI++  G+HI+ V   +
Sbjct: 61  GWGRIQELPGIFAQALSTAKKGDIV------GPIRSGVGFHILKVNDLR 103

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.3 bits (127), Expect = 7e-11
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 33/117 (28%)

Query: 29  VKVRHILCEKQSKVL------------------EALEKLKS--------GVKFPEVASQY 62
           VK  HIL + Q                       A+E+LKS           F EVA++ 
Sbjct: 8   VKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRV 67

Query: 63  SED-KARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMV 118
           S+   A++GGDLG   RG M   F++A + L +  +++ V       T  G HII  
Sbjct: 68  SDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIV------DTDSGVHIIKR 118

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 9e-11
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 30/124 (24%)

Query: 20  GKQKKGG-TAVKVRHILC---------------------EKQSKVLEALEKLKSGVK-FP 56
           GK  +G    V+  H+L                      E    +   ++K+KSG + F 
Sbjct: 1   GKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFE 60

Query: 57  EVASQYSEDKARQGGD-LGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHI 115
            +ASQ+S+  + +    LG   RG M   F+DA+F L    ++ PV       T  G HI
Sbjct: 61  SLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPV------FTDSGIHI 114

Query: 116 IMVE 119
           I+  
Sbjct: 115 ILRT 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1eq3a_	96	Parvulin {Human (Homo sapiens), hpar14 [TaxId: 960	99.97
d1jnsa_	92	Parvulin 10 (rotamase C) {Escherichia coli [TaxId:	99.96
d2pv2a1	103	Porin chaperone SurA, PPIase domains {Escherichia	99.94
d1pina2	119	Mitotic rotamase PIN1, domain 2 {Human (Homo sapie	99.94
d1m5ya3	108	Porin chaperone SurA, PPIase domains {Escherichia	99.94
d1j6ya_	120	Mitotic rotamase PIN1, domain 2 {Thale cress (Arab	99.92

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

Probab=99.97  E-value=1.2e-31  Score=175.12  Aligned_cols=96  Identities=76%  Similarity=1.294  Sum_probs=92.6

Q ss_pred             ceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchhhhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCCC
Q psy6496          27 TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDKARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEPP  106 (122)
Q Consensus        27 ~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~p  106 (122)
                      +.|+++||++.++++|++++++|++|++|++||++||.|++.++|+|||+..++|+|+|.+++|+|++|++|+|+.+..|
T Consensus         1 ~~v~vrHIl~~~~~~a~~i~~~i~~g~~F~~lA~~~S~d~~~~~G~lG~~~~~~l~~ef~~a~f~l~~g~is~~~~~~~p   80 (96)
T d1eq3a_           1 NAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPP   80 (96)
T ss_dssp             CCEEEEEEEECCCSTHHHHHHHHTTTTSHHHHHHHHCCCTTTCCSEEEEESSCCSSSHHHHHHHHCCSCCSSTTTBCSSC
T ss_pred             CcEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHhCcCccccccccceechHHhhHHHHHHHHhCCCCcCccccccCCC
Confidence            47999999999999999999999999999999999999988889999999999999999999999999999999988889


Q ss_pred             eeeCceEEEEEEeeeC
Q psy6496         107 IKTKFGYHIIMVEGKK  122 (122)
Q Consensus       107 i~s~~G~hIvkv~drr  122 (122)
                      |+|.+|||||+|++||
T Consensus        81 i~T~~G~HIikv~~kr   96 (96)
T d1eq3a_          81 VKTKFGYHIIMVEGRK   96 (96)
T ss_dssp             EEETTEEEEEEEEECC
T ss_pred             EecCCeEEEEEEeeEC
Confidence            9999999999999997

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.2e-29  Score=162.14  Aligned_cols=89  Identities=35%  Similarity=0.608  Sum_probs=85.3

Q ss_pred             ceEEEEEEEecCHHHHHHHHHHhcCCCCHHHHHHHhcchh-hhcCCcccceeCCCCcHHHHHHHhcCCCCcccCCCCCCC
Q psy6496          27 TAVKVRHILCEKQSKVLEALEKLKSGVKFPEVASQYSEDK-ARQGGDLGWMVRGSMVGEFQDAAFKLPISTVNNPVYTEP  105 (122)
Q Consensus        27 ~~v~v~~I~v~~~~~A~~i~~~l~~g~sF~~la~~~S~d~-~~~gG~lG~~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~  105 (122)
                      .+++++||+++++++|.+++++|++|.+|+++|++||.|+ +.+||+|||++.++|+|+|.+++++|++|++|+      
T Consensus         2 ~~~~a~HIlv~~~~~A~~i~~~l~~g~~F~~lA~~~S~d~s~~~gG~lG~~~~~~l~~~f~~~~~~l~~G~vs~------   75 (92)
T d1jnsa_           2 KTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTG------   75 (92)
T ss_dssp             CEEEEEEEEESSHHHHHHHHHHHHHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEE------
T ss_pred             CcceEEEEEeCCHHHHHHHHHHHHCCCCHHHHHHHhCCCcccchhhhhceeeHhhhhhHHHHHHHhCCCCCcCC------
Confidence            5789999999999999999999999999999999999984 678999999999999999999999999999998      


Q ss_pred             CeeeCceEEEEEEeee
Q psy6496         106 PIKTKFGYHIIMVEGK  121 (122)
Q Consensus       106 pi~s~~G~hIvkv~dr  121 (122)
                      ||+|++|||||+|++|
T Consensus        76 pi~t~~G~HIikv~dr   91 (92)
T d1jnsa_          76 PLHTQFGYHIIKVLYR   91 (92)
T ss_dssp             EEEETTEEEEEEEECC
T ss_pred             CEEeCCeEEEEEEEeC
Confidence            9999999999999987

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=7e-27  Score=153.34  Aligned_cols=90  Identities=27%  Similarity=0.495  Sum_probs=83.4

Q ss_pred             ceEEEEEEEec------------CHHHHHHHHHHhcCCCCHHHHHHHhcch-hhhcCCcccceeCCCCcHHHHHHHhcCC
Q psy6496          27 TAVKVRHILCE------------KQSKVLEALEKLKSGVKFPEVASQYSED-KARQGGDLGWMVRGSMVGEFQDAAFKLP   93 (122)
Q Consensus        27 ~~v~v~~I~v~------------~~~~A~~i~~~l~~g~sF~~la~~~S~d-~~~~gG~lG~~~~~~l~~~~~~a~~~l~   93 (122)
                      .+|+++||+|+            .++.|.+++.+|++|.+|+++|++||.+ ++.+||++||+..++||++|.+++++|+
T Consensus         1 te~~~~hIli~~~~~~~~~~~~~~~~~a~~~~~~l~~g~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~~~~~i~~l~   80 (103)
T d2pv2a1           1 TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAK   80 (103)
T ss_dssp             CEEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEEEGGGSBHHHHHHHHTCC
T ss_pred             CceEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhcccccccccccccccccccccccchhhhhhhhhcC
Confidence            37999999995            1356888999999999999999999998 5789999999999999999999999999


Q ss_pred             CCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          94 ISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        94 ~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      +|++|+      ||++++|||||+|++||
T Consensus        81 ~G~is~------pi~t~~G~hIikl~~~R  103 (103)
T d2pv2a1          81 KGDIVG------PIRSGVGFHILKVNDLR  103 (103)
T ss_dssp             TTCEEE------EEEETTEEEEEEEEEEC
T ss_pred             CCCCCC------cEEECCEEEEEEEeeEC
Confidence            999998      99999999999999997

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=155.96  Aligned_cols=94  Identities=33%  Similarity=0.525  Sum_probs=83.3

Q ss_pred             cccCCCceEEEEEEEecC---------------------HHHHHHHHHHhcCC-CCHHHHHHHhcch-hhhcCCccccee
Q psy6496          21 KQKKGGTAVKVRHILCEK---------------------QSKVLEALEKLKSG-VKFPEVASQYSED-KARQGGDLGWMV   77 (122)
Q Consensus        21 ~~~~~~~~v~v~~I~v~~---------------------~~~A~~i~~~l~~g-~sF~~la~~~S~d-~~~~gG~lG~~~   77 (122)
                      .....|++|+++||+++.                     .+.|++++.+|++| .+|++||++||++ ++.+||+|||+.
T Consensus         3 ~~~~~p~~vr~~HILi~~~~~~~~~~~~~~~i~~~k~ea~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~gG~lg~~~   82 (119)
T d1pina2           3 NGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFS   82 (119)
T ss_dssp             CSCCCCSCEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEEC
T ss_pred             CCCCCCcEEEEEEEEEecCCCcCchhhhhhhhhhhHHHHHHHHHHHHHHHHcChhhHHHHHHHcCCCccccccccccccc
Confidence            345678999999999951                     23467788888888 7999999999988 477999999999


Q ss_pred             CCCCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEee
Q psy6496          78 RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG  120 (122)
Q Consensus        78 ~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~d  120 (122)
                      .+.|+|+|.+++++|++|+||+      ||+|++|||||+|+|
T Consensus        83 ~~~l~~~f~~~~~~l~~GeiS~------pi~t~~G~HIikv~d  119 (119)
T d1pina2          83 RGQMQKPFEDASFALRTGEMSG------PVFTDSGIHIILRTE  119 (119)
T ss_dssp             TTSSCHHHHHHHHHCCTTCBCC------CEECSSCEEEEEECC
T ss_pred             cchHHHHHHHHHhcCCCCCcCC------cEEeCCcEEEEEEeC
Confidence            9999999999999999999998      999999999999986

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.7e-26  Score=152.89  Aligned_cols=91  Identities=34%  Similarity=0.613  Sum_probs=82.0

Q ss_pred             CceEEEEEEEecC---------HHHHHHHHHHhcCC-CCHHHHHHHhcchh--hhcCCcccceeCCCCcHHHHHHHhcCC
Q psy6496          26 GTAVKVRHILCEK---------QSKVLEALEKLKSG-VKFPEVASQYSEDK--ARQGGDLGWMVRGSMVGEFQDAAFKLP   93 (122)
Q Consensus        26 ~~~v~v~~I~v~~---------~~~A~~i~~~l~~g-~sF~~la~~~S~d~--~~~gG~lG~~~~~~l~~~~~~a~~~l~   93 (122)
                      ..+|+++||+++.         ...+.+++.+|++| .+|+++|++||.|+  +.+||++||+..+.||++|.+++++|+
T Consensus         4 ~tev~vrHILi~~~~~~~~~~a~~~~~~i~~~l~~~~~~F~~lA~~~S~d~~~~~~gG~lgw~~~~~l~~~~~~~~~~l~   83 (108)
T d1m5ya3           4 VTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLN   83 (108)
T ss_dssp             CEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHTCC
T ss_pred             ccEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCcCCccccccccccccccccccHHHHHHHHhCC
Confidence            4679999999962         34467888888887 69999999999983  678999999999999999999999999


Q ss_pred             CCcccCCCCCCCCeeeCceEEEEEEeeeC
Q psy6496          94 ISTVNNPVYTEPPIKTKFGYHIIMVEGKK  122 (122)
Q Consensus        94 ~G~vs~~~~~~~pi~s~~G~hIvkv~drr  122 (122)
                      +|++|+      ||+|++|||||+|.++|
T Consensus        84 ~GeiS~------pi~t~~G~hIikl~~~r  106 (108)
T d1m5ya3          84 KGQMSA------PVHSSFGWHLIELLDTR  106 (108)
T ss_dssp             TTCBCC------CEECSSCEEEEEEEEEE
T ss_pred             CCCCCc------cEEeCCEEEEEEEEEEe
Confidence            999998      99999999999999987

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=5.7e-26  Score=153.01  Aligned_cols=91  Identities=33%  Similarity=0.522  Sum_probs=81.4

Q ss_pred             cCCCceEEEEEEEecC-------------------------HHHHHHHHHHhcCC-CCHHHHHHHhcch-hhhcCCcccc
Q psy6496          23 KKGGTAVKVRHILCEK-------------------------QSKVLEALEKLKSG-VKFPEVASQYSED-KARQGGDLGW   75 (122)
Q Consensus        23 ~~~~~~v~v~~I~v~~-------------------------~~~A~~i~~~l~~g-~sF~~la~~~S~d-~~~~gG~lG~   75 (122)
                      +...++|+++||+++.                         .+.+++++.+|.+| .+|+++|++||++ ++.+||+|||
T Consensus         2 ~~s~e~vr~sHILik~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~GG~lGw   81 (120)
T d1j6ya_           2 MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGS   81 (120)
T ss_dssp             CSSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEE
T ss_pred             CCCcceEEEEEEEEccCcccchhhhccccccccccccHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCccccccccccc
Confidence            5678999999999951                         24467888888888 5999999999987 5789999999


Q ss_pred             eeCCCCcHHHHHHHhcCCCCcccCCCCCCCCeeeCceEEEEEEe
Q psy6496          76 MVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE  119 (122)
Q Consensus        76 ~~~~~l~~~~~~a~~~l~~G~vs~~~~~~~pi~s~~G~hIvkv~  119 (122)
                      +..++|+|+|.+++++|++|+||+      ||+|++|||||+|+
T Consensus        82 ~~~~~l~~~f~~~~~~l~~G~is~------pi~t~~G~HIikvt  119 (120)
T d1j6ya_          82 FGRGQMQKPFEEATYALKVGDISD------IVDTDSGVHIIKRT  119 (120)
T ss_dssp             CSSSSSCTHHHHHHHHCCSSSCCS------CEEETTEEECCCSC
T ss_pred             chhhhcChHHHHHHHcCCCCCcCC------CEEeCCeeEEEEEe
Confidence            999999999999999999999998      99999999999986