Psyllid ID: psy6704

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MESDIDVVGDEVKINKLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNACHNINTSPEHHPCR
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHcccccccccccEEEEcccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccEEEEEEcccEEEEEcEEEcEEEEEccccEEEcccccEEEEEccccEEEEEEEcccccEEEEEEEccccEEEEEEcEEEEEcccccccEEEEcccccEEccccccccEEEEEEEEccEEccccccEEEEEccEEEEEcccEEEEEEcEEEEEEcccEEEEEcccEEEEEEcccEEEEcccccccccccccccccccEEEEEEEEccccEEEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEccHHHHcccHHHHHHHHHHHHccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccEEEEEcccccccEEEcccEEEccccccEEEEEccccEEEEEEEccccccccEEEEccccEEEEEEEEEEEEccccccEEEEEccccccccccccccEEEEEEEEEcEEEccccccEEEEcccEEEEEccccEEEEEEEEEEEEcccEEEEEEccEEEEEEccEEEEEcccccccccccccccccccEEEEEEEEccccEEEEEEcccccccccEEEccccccccccc
Coil and Loop (DISEMBL)
mesdidvvgdevkINKLSIRDKMLLKRNFnrlrhsenfqagrviedpggspshtglhdgksfTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLygdidlgklykddgyfssfkdsglritgrqggsvhidvnfgvnrtrrmlsiepegvrvtnvkefnvydptdhlpifstgfrsadfglprgvkkldvqqvrtsriispieddltlrsetytrlkgnegismegrtitwtaDKDIFLKSVNGSLTLAAENGIflevkklpfvkknlfldsnlHNAAFKLcvcmpggrifrvkaddimshnachnintspehhpcr
Flexible Loop (DISEMBL)
mesdidvvgdevkinklsirdkmLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGlritgrqggsvhidvnfgvnrtrrmlsiepegvrvtnvkefnvydPTDHLPIFSTGFrsadfglprgvkkldvqqvrtsriispieddltlrsetytrlkgnegismegrtitWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNachnintspehhpcr
Low Complexity Region (SEG)
MESDIDVVGDEVKINKLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFALINlvltltlmtmlRIGWGMETIEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNACHNINTSPEHHPCR
Disordered region (IsUnstruct)
*******VGDEVKINKLSIRDKMLLKRNFNRL************************HDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNACHN***********
Disordered Region (DISOPRED)
**SDIDVVG****************************F***RV***********GLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLYKDDG*****KD**LRITGRQGGSVHIDV***********SIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIE**LTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLE**********************KLCVCMPGGRIFRVKADDIMSHNAC**INTS*******
Disordered Region (DISEMBL)
MESDIDVVGDEVKINKLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNACHNINT********
Disordered Region (DISPRO)
*****DVVGDEVKINKLSIRDKMLL***********NFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNACHNI*T********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESDIDVVGDEVKINKLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNACHNINTSPEHHPCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
P82349	320	Beta-sarcoglycan OS=Mus m	yes	N/A	0.879	0.912	0.290	4e-22
Q5R9U1	319	Beta-sarcoglycan OS=Pongo	yes	N/A	0.876	0.912	0.292	8e-21
Q60538	320	Beta-sarcoglycan OS=Mesoc	N/A	N/A	0.879	0.912	0.281	9e-21
Q28635	318	Beta-sarcoglycan OS=Oryct	yes	N/A	0.861	0.899	0.291	1e-20
Q16585	318	Beta-sarcoglycan OS=Homo	yes	N/A	0.876	0.915	0.288	3e-20
A6QP70	317	Beta-sarcoglycan OS=Bos t	yes	N/A	0.858	0.899	0.287	7e-20

>sp|P82349|SGCB_MOUSE Beta-sarcoglycan OS=Mus musculus GN=Sgcb PE=1 SV=1

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 28/320 (8%)

Query: 16  KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
           K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct: 21  KKSMREKAVERRNVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIVLLFILA 78

Query: 76  LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
           +INL++TL +  ++RIG  G +++E      +++     D+G    LYK        ++ 
Sbjct: 79  VINLLITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 135

Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
            L ITG     V     F    T+  LS+E     +T+      +DP  H  +FST + +
Sbjct: 136 NLVITGNNQPIV-----FQQGTTK--LSVEKNKTSITSDIGMQFFDPRTHNILFSTDYET 188

Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
            +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +    D
Sbjct: 189 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGD 248

Query: 252 IFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKAD 311
           + LK+ N   ++     + +   +LP         S      +KLC+C   G +F+V+  
Sbjct: 249 VELKAEN---SIILNGTVMVSPTRLPSSSSGDQSGSGDW-VRYKLCMC-ADGTLFKVQVT 303

Query: 312 DIMSHNACHNINTSPEHHPC 331
                   HN+      +PC
Sbjct: 304 G-------HNMGCQVSDNPC 316

Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix.
Mus musculus (taxid: 10090)

>sp|Q5R9U1|SGCB_PONAB Beta-sarcoglycan OS=Pongo abelii GN=SGCB PE=2 SV=1

 Score =  101 bits (251), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 154/315 (48%), Gaps = 24/315 (7%)

Query: 16  KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
           K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct: 20  KKSMREKAVERRNVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIILLFILA 77

Query: 76  LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
           +INL++TL +  ++RIG  G +++E      +++     D+G    LYK        ++ 
Sbjct: 78  VINLIITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 134

Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
            L ITG     V     F    T+  LS+E     +T+      +DP     +FST + +
Sbjct: 135 NLVITGNNQPIV-----FQQGTTK--LSVENNKTSITSDIGMQFFDPRTQNILFSTDYET 187

Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
            +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +    +
Sbjct: 188 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGN 247

Query: 252 IFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKAD 311
           + LK+ N   ++     + +   +LP       L S      +KLC+C   G +F+V+  
Sbjct: 248 MELKAEN---SIILNGSVMVSTTRLPSSSSGDQLGSG-DWVRYKLCMC-ADGTLFKVQ-- 300

Query: 312 DIMSHNACHNINTSP 326
            + S N    I+ +P
Sbjct: 301 -VTSQNMGCQISDNP 314

Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix.

Pongo abelii (taxid: 9601)

>sp|Q60538|SGCB_MESAU Beta-sarcoglycan OS=Mesocricetus auratus GN=SGCB PE=2 SV=1

 Score =  101 bits (251), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 151/320 (47%), Gaps = 28/320 (8%)

Query: 16  KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
           K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct: 21  KKSMREKAVERRNVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIVLLFILA 78

Query: 76  LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
           +INL++TL +  ++RIG  G +++E      +++     D+G    LYK        ++ 
Sbjct: 79  VINLLITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 135

Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
            L ITG     V     F    T+  LS+E     +T+      +DP     +FST + +
Sbjct: 136 NLVITGNNQPIV-----FQQGTTK--LSVEKNKTSITSDIGMQFFDPRTQNILFSTDYET 188

Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
            +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +    +
Sbjct: 189 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGN 248

Query: 252 IFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKAD 311
           + LK+ N   ++     + +   +LP                +KLC+C   G +F+V+  
Sbjct: 249 VELKAEN---SIILNGTVMVSPTRLPSSSSGDQSGGGDW-VRYKLCMC-ADGTLFKVQVT 303

Query: 312 DIMSHNACHNINTSPEHHPC 331
                   HN+      +PC
Sbjct: 304 G-------HNMGCQVADNPC 316

Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix.

Mesocricetus auratus (taxid: 10036)

>sp|Q28635|SGCB_RABIT Beta-sarcoglycan OS=Oryctolagus cuniculus GN=SGCB PE=1 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 151/326 (46%), Gaps = 40/326 (12%)

Query: 16  KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
           K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL+L A
Sbjct: 19  KKSMREKAVERRNVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIVLLFLLA 76

Query: 76  LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
           +INL++TL +  ++RIG  G +++E      +++     D+G    LYK        ++ 
Sbjct: 77  VINLIITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 133

Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
            L ITG     V     F    T+  LS+E     +T+      +DP     +FST + +
Sbjct: 134 NLVITGNNQPIV-----FQQGTTK--LSVEKNKTSITSDIGMQFFDPRTQNILFSTDYET 186

Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
            +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +     
Sbjct: 187 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEF----- 241

Query: 252 IFLKSVNGSLTLAAENGIFL------EVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRI 305
                + G++ L AEN I L         +LP       L        +KLC+C   G +
Sbjct: 242 ----HMGGNMELKAENSIILNGTVMVSTTRLPSSSSADQLGGG-DWVRYKLCMCAD-GTL 295

Query: 306 FRVKADDIMSHNACHNINTSPEHHPC 331
           F+V+           N+      +PC
Sbjct: 296 FKVQVTG-------QNVGCQVSDNPC 314

Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q16585|SGCB_HUMAN Beta-sarcoglycan OS=Homo sapiens GN=SGCB PE=1 SV=1

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 154/315 (48%), Gaps = 24/315 (7%)

Query: 16  KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
           K S+R+K + +R+ N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct: 19  KKSMREKAVERRSVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIILLFILA 76

Query: 76  LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
           +INL++TL +  ++RIG  G +++E      +++     D+G    LYK        ++ 
Sbjct: 77  VINLIITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 133

Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
            L ITG     V     F    T+  LS+E     +T+      +DP     +FST + +
Sbjct: 134 NLVITGNNQPIV-----FQQGTTK--LSVENNKTSITSDIGMQFFDPRTQNILFSTDYET 186

Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
            +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +    +
Sbjct: 187 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGN 246

Query: 252 IFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKAD 311
           + LK+ N   ++     + +   +LP       L S      +KLC+C   G +F+V+  
Sbjct: 247 MELKAEN---SIILNGSVMVSTTRLPSSSSGDQLGSG-DWVRYKLCMC-ADGTLFKVQ-- 299

Query: 312 DIMSHNACHNINTSP 326
            + S N    I+ +P
Sbjct: 300 -VTSQNMGCQISDNP 313

Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix.

Homo sapiens (taxid: 9606)

>sp|A6QP70|SGCB_BOVIN Beta-sarcoglycan OS=Bos taurus GN=SGCB PE=2 SV=1

 Score = 98.2 bits (243), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 151/327 (46%), Gaps = 42/327 (12%)

Query: 16  KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
           K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct: 18  KKSMREKAVERRNVNK-EHNSNFKAGYIPIDED-RLHKTGLRGRKGNLAICVIVLLFILA 75

Query: 76  LINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGDIDLG---KLYKDDGYFSSFKDS 131
           +INL++TL +  ++RIG  G +++E      +++     D+G    LYK        ++ 
Sbjct: 76  VINLIITLVIWAVIRIGPNGCDSMEFHES-GLLRFKQVSDMGVIHPLYKST--VGGRRNE 132

Query: 132 GLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRS 191
            L ITG     V     F    T+  LS+      +T+      +DP     +FST + +
Sbjct: 133 NLVITGNNQPIV-----FQQGTTK--LSVGKNKTSITSDTGMQFFDPRTQNILFSTDYET 185

Query: 192 ADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKD 251
            +F LP GVK L+VQ+  T RI S    DL ++      ++GNEG+ + G+TI +     
Sbjct: 186 HEFHLPSGVKSLNVQKASTERITSNATSDLNIKVGGRAIVRGNEGVFIMGKTIQF----- 240

Query: 252 IFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHN-------AAFKLCVCMPGGR 304
                + G++ L AEN I L    +  V  N    S+  +         +KLC+C   G 
Sbjct: 241 ----HMGGNMELKAENSIILNGTVM--VSTNRLPSSSSGDQFGGDDWVRYKLCMCAD-GT 293

Query: 305 IFRVKADDIMSHNACHNINTSPEHHPC 331
           +FRV+           N+      +PC
Sbjct: 294 LFRVQVTG-------QNMGCQTSDNPC 313

Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
91076388	324	PREDICTED: similar to beta-sarcoglycan [	0.924	0.947	0.373	1e-51
383847939	336	PREDICTED: beta-sarcoglycan-like isoform	0.933	0.922	0.352	4e-50
383847941	335	PREDICTED: beta-sarcoglycan-like isoform	0.831	0.823	0.361	2e-49
350397280	346	PREDICTED: beta-sarcoglycan-like [Bombus	0.876	0.841	0.369	2e-49
340725961	346	PREDICTED: beta-sarcoglycan-like [Bombus	0.876	0.841	0.366	4e-49
242014758	300	beta-sarcoglycan, putative [Pediculus hu	0.846	0.936	0.369	1e-48
357622707	325	putative beta-sarcoglycan [Danaus plexip	0.792	0.809	0.386	1e-48
332029080	338	Beta-sarcoglycan [Acromyrmex echinatior]	0.822	0.807	0.385	1e-47
328711010	302	PREDICTED: hypothetical protein LOC10057	0.894	0.983	0.376	3e-47
307211654	338	Beta-sarcoglycan [Harpegnathos saltator]	0.801	0.786	0.374	2e-46

>gi|91076388|ref|XP_968260.1| PREDICTED: similar to beta-sarcoglycan [Tribolium castaneum] gi|270002457|gb|EEZ98904.1| hypothetical protein TcasGA2_TC004520 [Tribolium castaneum]

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/335 (37%), Positives = 189/335 (56%), Gaps = 28/335 (8%)

Query: 6   DVVGDEVKINKLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSH------TGLHDG 59
           DV  DEV  + +SIRDK LLKR+ ++  H+ NF+AG V       P H      TGL   
Sbjct: 8   DVFSDEV--DSISIRDKALLKRSVSK-HHNNNFKAGYV-------PVHEQHLTKTGLRGR 57

Query: 60  KSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLY 119
           K+F FW L+ LL++ A+ NL+LT+T++ +LR+G GME+IE++P    VK +G  DLG +Y
Sbjct: 58  KTFAFWTLVALLFILAVGNLLLTVTILGVLRLGQGMESIELVPDEYAVKFFGVTDLGHMY 117

Query: 120 KDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPT 179
           K DG    FKD  + IT  +   +   ++    R    + +   G        F+V +  
Sbjct: 118 KRDGKIEGFKDEPVAITSEESAVLLNIMSLRNGRPSNQMRVTKNGTSFWGFDSFHVRNKQ 177

Query: 180 DHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISM 239
             + +FST   S +F   RG    D + V T+RI SP+   L +     T  KG+EG  M
Sbjct: 178 GAV-LFSTD--SPNFHALRGANDFDAKIVFTNRIASPVHSKLKVEGRVLT-FKGSEGTRM 233

Query: 240 EGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPF--VKKNLFLDSNLHNAAFKLC 297
           +G+ I W+AD+DI+LK+ NGS+ L+  +G  ++V+++P   VK N ++ S      +K+C
Sbjct: 234 DGKDIFWSADQDIYLKTNNGSIVLSGSDGTLIDVRRIPIATVKNNNYVTSQ-----YKVC 288

Query: 298 VCMPGGRIFRVKADDIMSHNA-CHNINTSPEHHPC 331
           VCMP G++FR+      +    CH+INT P H+PC
Sbjct: 289 VCMPEGKLFRIPVPSGPNPRVFCHHINTQPPHNPC 323

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847939|ref|XP_003699610.1| PREDICTED: beta-sarcoglycan-like isoform 1 [Megachile rotundata]

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 113/321 (35%), Positives = 177/321 (55%), Gaps = 11/321 (3%)

Query: 15  NKLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLF 74
           + LS  D  L+K    R   SEN     +I      P+       + +  W L  +L + 
Sbjct: 22  DNLSNSDGPLIKGYVCRNSCSENINRTMLISR--TMPTTNEKSTKRRYCLWILTFILAII 79

Query: 75  ALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGLR 134
            L NL L +T++ +LRI  GME +EM+P  N+VK YG  DL ++    G   S+ D  + 
Sbjct: 80  GLCNLFLNITVIAVLRISQGMEAMEMIPDENLVKFYGKTDLDRVCLRSGICQSYGDESME 139

Query: 135 ITGRQGGSVHIDVNFG--VNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSA 192
           I+G + G + IDVN     + TR  +++ P G  + +V+ F + DP      F+T F   
Sbjct: 140 ISGDEAG-IQIDVNNQRTQDETRVKVTVLPNGTSIAHVESFEIRDPRSGAIYFTTDF--P 196

Query: 193 DFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDI 252
           +FGLP GV+K+DV+   T RI SP+ + LT+ S+    ++G EG SME + I W+AD DI
Sbjct: 197 NFGLPSGVEKIDVKLAETHRITSPVNESLTVNSDDQISMQGAEGASMESKDIVWSADTDI 256

Query: 253 FLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADD 312
           FLKS+NGS+ L A+ G+ ++V+ +P     +FL +      +K+C+CMP G++F+V    
Sbjct: 257 FLKSINGSIVLDAKEGVAIDVENIPVTP--IFLQNPPGQEQYKVCICMPQGKLFKVAVRT 314

Query: 313 IMSHNA--CHNINTSPEHHPC 331
             +  +  C  I+ +PE+ PC
Sbjct: 315 GSNSRSVNCARISRTPENDPC 335

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847941|ref|XP_003699611.1| PREDICTED: beta-sarcoglycan-like isoform 2 [Megachile rotundata]

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 164/285 (57%), Gaps = 9/285 (3%)

Query: 51  PSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLY 110
           P+       + +  W L  +L +  L NL L +T++ +LRI  GME +EM+P  N+VK Y
Sbjct: 55  PTTNEKSTKRRYCLWILTFILAIIGLCNLFLNITVIAVLRISQGMEAMEMIPDENLVKFY 114

Query: 111 GDIDLGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVN--FGVNRTRRMLSIEPEGVRVT 168
           G  DL ++    G   S+ D  + I+G + G + IDVN     + TR  +++ P G  + 
Sbjct: 115 GKTDLDRVCLRSGICQSYGDESMEISGDEAG-IQIDVNNQRTQDETRVKVTVLPNGTSIA 173

Query: 169 NVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETY 228
           +V+ F + DP      F+T F   +FGLP GV+K+DV+   T RI SP+ + LT+ S+  
Sbjct: 174 HVESFEIRDPRSGAIYFTTDF--PNFGLPSGVEKIDVKLAETHRITSPVNESLTVNSDDQ 231

Query: 229 TRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSN 288
             ++G EG SME + I W+AD DIFLKS+NGS+ L A+ G+ ++V+ +P     +FL + 
Sbjct: 232 ISMQGAEGASMESKDIVWSADTDIFLKSINGSIVLDAKEGVAIDVENIPVTP--IFLQNP 289

Query: 289 LHNAAFKLCVCMPGGRIFRVKADDIMSHNA--CHNINTSPEHHPC 331
                +K+C+CMP G++F+V      +  +  C  I+ +PE+ PC
Sbjct: 290 PGQEQYKVCICMPQGKLFKVAVRTGSNSRSVNCARISRTPENDPC 334

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397280|ref|XP_003484827.1| PREDICTED: beta-sarcoglycan-like [Bombus impatiens]

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 172/303 (56%), Gaps = 12/303 (3%)

Query: 35  SENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWG 94
           SEN     ++     S S+  L   + +  W L  +L +  L NL L +T++ +LRI  G
Sbjct: 48  SENINRTTIVSSYTMSASNEKLIK-RRYCLWTLTFILAIIGLCNLFLNITVIAVLRISQG 106

Query: 95  METIEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRT 154
           ME +E++P  N+VK YG  DL ++    G   S+ D  + I+G + G V I VN   +RT
Sbjct: 107 MEAMEVIPDENLVKFYGKTDLDRVCLQSGVCQSYGDEPMEISGNEAG-VQIRVNVNNHRT 165

Query: 155 R----RMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRT 210
                  ++I   G  ++ V+ F V DP      F+T F   +FGLP GVKK+DV+   T
Sbjct: 166 DDETLAKVTILSNGTTMSKVESFEVKDPRTGTIYFTTDF--PNFGLPAGVKKIDVKIAET 223

Query: 211 SRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIF 270
            RI SP+ + LT+ S+    ++G EG SME + I W+AD DIFL+SVNGS+ L A++G+ 
Sbjct: 224 HRITSPVNESLTVNSDDQISMQGAEGASMESKDIVWSADTDIFLRSVNGSIILDAKDGVS 283

Query: 271 LEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNA--CHNINTSPEH 328
           ++V+ +P     LFL +   +  +K+C+CMP G++F+V     +S  +  C  IN +PE+
Sbjct: 284 IDVENIPVAP--LFLQNPSGHEQYKVCICMPQGKLFKVAVRAGVSSRSVNCARINRTPEN 341

Query: 329 HPC 331
            PC
Sbjct: 342 DPC 344

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725961|ref|XP_003401332.1| PREDICTED: beta-sarcoglycan-like [Bombus terrestris]

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 111/303 (36%), Positives = 172/303 (56%), Gaps = 12/303 (3%)

Query: 35  SENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWG 94
           SEN     ++     S S+  L   + +  W L  +L +  L NL L +T++ +LRI  G
Sbjct: 48  SENINRTTIVSSYTMSASNEKLIK-RRYCLWTLTFILAIIGLCNLFLNITVIAVLRISQG 106

Query: 95  METIEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRT 154
           ME +E++P  N+VK YG  DL ++    G   S+ D  + I+G + G V I VN   +RT
Sbjct: 107 MEAMEVIPDENLVKFYGKTDLDRICLQSGVCQSYGDEPMEISGNEAG-VQIRVNVNNHRT 165

Query: 155 R----RMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRT 210
                  ++I   G  ++ V+ F V DP   +  F+T F   +FGLP GVKK+DV+   T
Sbjct: 166 DDETLAKVTILSNGTTMSKVESFEVKDPRTGIIYFTTDF--PNFGLPAGVKKIDVKIAET 223

Query: 211 SRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIF 270
            RI SP+ + LT+ S+    ++G EG SME + I W+AD DIFL+SVNGS+ L A++G+ 
Sbjct: 224 HRITSPVNESLTVNSDDQISMQGAEGASMESKDIVWSADTDIFLRSVNGSIILDAKDGVS 283

Query: 271 LEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNA--CHNINTSPEH 328
           ++V+ +P     LF  +   +  +K+C+CMP G++F+V     +S  +  C  IN +PE+
Sbjct: 284 IDVENIPIAP--LFQQNPSGHEQYKVCICMPQGKLFKVAVRAGVSSRSVNCARINRTPEN 341

Query: 329 HPC 331
            PC
Sbjct: 342 DPC 344

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014758|ref|XP_002428052.1| beta-sarcoglycan, putative [Pediculus humanus corporis] gi|212512571|gb|EEB15314.1| beta-sarcoglycan, putative [Pediculus humanus corporis]

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/295 (36%), Positives = 177/295 (60%), Gaps = 14/295 (4%)

Query: 38  FQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMET 97
           FQ   VI+       H+      ++ FW LI LL++ AL NL+LT++++ +LR+G GME+
Sbjct: 17  FQIVTVIQKMRAKQKHS------AYLFWILISLLFILALGNLILTISILGVLRLGQGMES 70

Query: 98  IEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRM 157
           +E++P  +++K +G IDL  +YK DG   SF D  + + G +G +V I +          
Sbjct: 71  LELVPAESVIKFFGLIDLDNIYKRDGKLESFNDFPMEVEGDEG-NVFISIPENEKEITST 129

Query: 158 LSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPI 217
           ++ + +   + NV  F V +P     IFST F   +FGLP+GV KLDV+ V T RI S +
Sbjct: 130 INFDKKQKIIKNVDSFIVRNPLTGKTIFSTDF--PNFGLPKGVGKLDVELVLTKRITSAL 187

Query: 218 EDDLTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLP 277
           +  L ++S+++ +LKG+EGI ++G+ + ++AD+DIFLKSVN S+ L  +NG+ ++V+ LP
Sbjct: 188 DKILVIKSDSFVKLKGSEGIHIDGKEVIFSADQDIFLKSVNKSIILDGQNGVIIDVRNLP 247

Query: 278 FVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHN-ACHNINTSPEHHPC 331
              +     +      +K+CVCMP G++FR+      S   +C+NI TS   +PC
Sbjct: 248 IASEK----NPRTFTQYKICVCMPEGKLFRLAIPPGQSTVISCNNIATSSFDNPC 298

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622707|gb|EHJ74122.1| putative beta-sarcoglycan [Danaus plexippus]

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/274 (38%), Positives = 165/274 (60%), Gaps = 11/274 (4%)

Query: 60  KSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLY 119
           ++F FW L+ LL + A+ NLVLT +++ +LR+G G+E++E LPL + VK  GD +L  +Y
Sbjct: 60  RTFVFWILVFLLLVTAVGNLVLTFSILGVLRLGSGLESMEFLPLHDAVKFLGDTNLDNIY 119

Query: 120 KDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPT 179
           K DG   SF+D+ L IT  + GSV I +     R+   L +   GV +  V  FN+ DP 
Sbjct: 120 KKDGLIESFRDTPLSITS-ENGSVLITLQTRAPRSETKLIVNTTGVFIKGVTTFNINDPD 178

Query: 180 DHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISM 239
             + +FS+G  + +  +   +  L+ +QV T RI SP+++DL  RS+    L+G EG  M
Sbjct: 179 SGVQLFSSG--NPEVTVNENLNSLNARQVSTKRISSPVDEDLVFRSDASAYLRGAEGTHM 236

Query: 240 EGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAA--FKLC 297
           E + + W+AD+DI L+S NGS+ L+ + G+F++V+ LP       L S  H+    FK+C
Sbjct: 237 ESKELYWSADQDIHLRSANGSVILSGKEGVFVDVRYLPIA-----LPSKEHHGTGQFKVC 291

Query: 298 VCMPGGRIFRVKADDIMSHNACHNINTSPEHHPC 331
           VCMP G++FR+   D      C +INT+ + +PC
Sbjct: 292 VCMPQGKLFRIAVPD-GQRVTCSHINTTGDLNPC 324

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029080|gb|EGI69094.1| Beta-sarcoglycan [Acromyrmex echinatior]

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/285 (38%), Positives = 164/285 (57%), Gaps = 12/285 (4%)

Query: 54  TGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDI 113
           TG    + +  W L  +L +  L NL L +T++ +LRI  GME IE++P  N+VK YG  
Sbjct: 57  TGEKSKRRYCLWMLTLVLAIIGLCNLFLNITVIAVLRISQGMEAIEVIPDENLVKFYGRT 116

Query: 114 DLGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDV-NFG-VNRT--RRMLSIEPEGVRVTN 169
           DL K+    G   S+ D  + I+G + G VH+DV N G ++ T     L I P G  ++ 
Sbjct: 117 DLDKISLQSGICQSYGDEPMEISGDEAG-VHVDVKNRGQIHETYPHSKLGILPNGTTMSQ 175

Query: 170 VKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYT 229
           V+ F V DP      F+T F   +FGLP GV+ +DV+   T RI SP+ + L ++S+   
Sbjct: 176 VESFEVKDPRTGTIYFTTDF--PNFGLPNGVETIDVRIAETHRITSPVNESLAVKSDNEV 233

Query: 230 RLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNL 289
            L G EG+ ME + I W+AD DIFLKSVNGS+ L A++G+F++V+ +P     +FL S  
Sbjct: 234 SLHGAEGVHMESKDIVWSADLDIFLKSVNGSVVLDAKDGVFIDVEDIPVAP--MFLQSPT 291

Query: 290 HN-AAFKLCVCMPGGRIFRVKADDIMSHNA--CHNINTSPEHHPC 331
            +   +K+CVCMP G++F++      S     C  +  +PE+ PC
Sbjct: 292 TSFEQYKVCVCMPQGKLFKIPVRPGASSRTVNCARVVRTPENDPC 336

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711010|ref|XP_003244422.1| PREDICTED: hypothetical protein LOC100572072 [Acyrthosiphon pisum]

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/313 (37%), Positives = 169/313 (53%), Gaps = 16/313 (5%)

Query: 25  LKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHD----GKSFTFWALIGLLYLFALINLV 80
           + +N   +         R+I+ P    S T  +D      ++ FW     L + A+I L 
Sbjct: 1   MMKNLKNVASQNLLLPNRLIK-PSKKQSKTEENDWLLVATNWYFWIYTWTLMVVAIIGLG 59

Query: 81  LTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLYKDDGYFSSFKDSGLRITGRQG 140
            T+ LM +LR    ME+IE L    + KL G+IDL  +YK DG    FKD  L +     
Sbjct: 60  ATIMLMVVLRFTTRMESIEFLTDSELTKLMGNIDLDDIYKVDGIMEGFKDIPLEMVSEND 119

Query: 141 GSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGV 200
             +   VN         + +     +V N+  F V DP +  PIF+T F   +FGLP GV
Sbjct: 120 NILLHVVNPEDKSLESAIELGFTKTQVKNINSFTVGDPEN--PIFTTSF--PNFGLPEGV 175

Query: 201 KKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGS 260
           + LDV  V T+RI+SPI + LTL+S  YTRLKGNEG +++G  I W+A+ DIFL+SVNG+
Sbjct: 176 RHLDVTTVYTNRIVSPINETLTLKSSNYTRLKGNEGTTIDGSKIKWSAEGDIFLRSVNGT 235

Query: 261 LTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVK-ADDIMSHNAC 319
           + L++  GI+L+V+ LP V  N F         +KLC+CMP G +FRV  +    S+ AC
Sbjct: 236 VVLSSA-GIYLDVQNLPVVLSNKFAAHQ-----YKLCICMPSGMVFRVPVSTSYNSYMAC 289

Query: 320 HNINTSPEHHPCR 332
             I+    +HPC+
Sbjct: 290 SMIDLGESNHPCK 302

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211654|gb|EFN87678.1| Beta-sarcoglycan [Harpegnathos saltator]

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/278 (37%), Positives = 157/278 (56%), Gaps = 12/278 (4%)

Query: 60  KSFTFWALIGLLYLFALINLVLTLTLMTMLRIGWGMETIEMLPLLNMVKLYGDIDLGKLY 119
           + +  W L  +L +  + NL L +T++ +LRI  GME +E++P  N+VK YG  DL K+ 
Sbjct: 65  RRYCLWTLTLILAIIGVCNLFLNITVIAVLRISQGMEAMEVIPDENLVKFYGRTDLDKVS 124

Query: 120 KDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRT----RRMLSIEPEGVRVTNVKEFNV 175
              G   S+ D  + I+G + G V +DV     RT    R  L + P G  ++ V+ F V
Sbjct: 125 LQSGICQSYGDESMEISGDEAG-VRVDVKS--RRTHEHPRSKLGVLPNGTTMSQVESFEV 181

Query: 176 YDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNE 235
            DP   +  F+T F   +FGLP GVKK+DV+   T RI SP+ + LT+ S+    L G E
Sbjct: 182 KDPRTGVTYFTTDF--PNFGLPSGVKKIDVKIAETHRITSPVNESLTINSDNQISLHGAE 239

Query: 236 GISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLFLDSNLHNAAFK 295
           G+ ME + I W+AD D+FLKSVNGS+ L A++G+ ++V+ +P     L   +  H   +K
Sbjct: 240 GVRMESKDIVWSADVDVFLKSVNGSIMLDAKDGVSIDVENIPVAPMFLQNPATSHE-QYK 298

Query: 296 LCVCMPGGRIFRVKADDIMSHNA--CHNINTSPEHHPC 331
           +CVCMP G++F+V            C  +  +PE+ PC
Sbjct: 299 VCVCMPQGKLFKVPVRPGTGSRMINCARVVRTPENDPC 336

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
FB|FBgn0038042	352	Scgbeta "Sarcoglycan beta" [Dr	0.777	0.732	0.315	9.5e-34
ZFIN|ZDB-GENE-030131-6695	313	sgcb "sarcoglycan, beta (dystr	0.831	0.881	0.303	4.8e-23
MGI|MGI:1346523	320	Sgcb "sarcoglycan, beta (dystr	0.876	0.909	0.298	1.6e-22
RGD|1594202	320	Sgcb "sarcoglycan, beta (dystr	0.876	0.909	0.298	7e-22
UNIPROTKB|F1NLD5	320	SGCB "Uncharacterized protein"	0.882	0.915	0.299	2.4e-21
UNIPROTKB|F1P4K5	312	SGCB "Uncharacterized protein"	0.882	0.939	0.299	2.4e-21
UNIPROTKB|Q16585	318	SGCB "Beta-sarcoglycan" [Homo	0.876	0.915	0.295	1e-20
UNIPROTKB|F1SE70	319	SGCB "Uncharacterized protein"	0.834	0.868	0.298	2.7e-20
UNIPROTKB|F1PA70	320	SGCB "Uncharacterized protein"	0.834	0.865	0.295	3.5e-20
UNIPROTKB|A6QP70	317	SGCB "Beta-sarcoglycan" [Bos t	0.834	0.873	0.295	9.2e-20

FB|FBgn0038042 Scgbeta "Sarcoglycan beta" [Drosophila melanogaster (taxid:7227)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 86/273 (31%), Positives = 140/273 (51%)

Query:    53 HTGLHDGKS-FTFWALIGLLYLFALINXXXXXXXXXXXRIGWGMETIEMLPLLNMVKLYG 111
             H G H G++ F FW ++ LL +  + N           R+G G++ +E++P +++VK YG
Sbjct:    68 HPG-HQGRNTFAFWTIVVLLLVLTVGNLLLTLTIVGVLRLGKGVQGMEVIPEVDLVKFYG 126

Query:   112 DIDLGKLYKDD-GYFSSFKDSGLRITGRQG---GSVHIDV---NFGVNRTRRMLSIEPEG 164
               DL ++  +  G    F D  + I+   G   G VH+ V     G    R  + +  EG
Sbjct:   127 TTDLERVQTNSIGQIHGFSDVPVTISSDAGDGEGGVHVRVFRNGNGAASERDRIVLNREG 186

Query:   165 VRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLR 224
             + V     F V DP D  PIF+T      + +P GV+ L  + V  S I+SPI++ L L 
Sbjct:   187 ILVQATNLFEVKDPVDKQPIFTT--HRPQYNIPGGVEALQAKVVSASGIVSPIDESLVLE 244

Query:   225 SETYTRLKGNEGISMEGRTITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKKNLF 284
             S+    ++G+EG+  +G ++   A+  I + S  G+  L A  GIFL++ ++P V   L 
Sbjct:   245 SDGRMAIRGSEGVYFDGASVDMQAEHHILINSTQGATILEAGTGIFLDMDRIPIVSSELG 304

Query:   285 LDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHN 317
             L +   +  +K+CVCMP G +FR+    +  HN
Sbjct:   305 LRTG--SVQYKICVCMPHGTLFRIAIPRV--HN 333

GO:0008307 "structural constituent of muscle" evidence=ISS

GO:0016012 "sarcoglycan complex" evidence=ISS;NAS

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-6695 sgcb "sarcoglycan, beta (dystrophin-associated glycoprotein)" [Danio rerio (taxid:7955)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 91/300 (30%), Positives = 147/300 (49%)

Query:    16 KLSIRDKMLLKRNFNRLRHSENFQAGRV-IEDPGGSPSHTGLHDGKSFTFWALIGLLYLF 74
             K S+R+K + +R+ N+  H+ NF+AG V IE+       TGL   K      +I LL+L 
Sbjct:    13 KKSMREKAIERRSANK-EHNSNFKAGYVPIEEE--RLHKTGLRGRKGIFAIGIIILLFLL 69

Query:    75 ALINXXXXXXXXXXXRIG-WGMETIEMLPLLNMVKLYGDIDLGKLYK-DDGYFSSFKDSG 132
             ALIN           RIG  G E++E      +++     D+G ++          KD  
Sbjct:    70 ALINLIITLVIWTVIRIGPGGCESMEFHES-GLLRFKQKADMGIVHPLHKSTVGGRKDQD 128

Query:   133 LRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSA 192
             L ITG     V     F    T+  LS+E +   + +    +  DP      FST F + 
Sbjct:   129 LVITGNNNPVV-----FRQGNTK--LSVEEDKTSIVSDLGISFTDPRTQNTFFSTDFDTH 181

Query:   193 DFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDI 252
             +F LP+ VK L+V++  T RI S    DLT++ +    ++GNEG+ + G+T+ ++    I
Sbjct:   182 EFHLPKEVKVLNVKKASTERITSNASSDLTIKGDGKAIIRGNEGVYIMGKTVEFSMGGGI 241

Query:   253 FLKSVNGSLTLAAENG-IFLEVKKLP--FVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVK 309
              LK+ N S+ L   NG + +   ++P   +  +L+ +  L    +KLC+C  G  +FRV+
Sbjct:   242 ELKAEN-SIIL---NGSVMISPSRIPNSSLGGDLYFNDGLER--YKLCMCADG-TLFRVQ 294

GO:0016021 "integral to membrane" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0016012 "sarcoglycan complex" evidence=IEA

GO:0042383 "sarcolemma" evidence=IDA

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=NAS

MGI|MGI:1346523 Sgcb "sarcoglycan, beta (dystrophin-associated glycoprotein)" [Mus musculus (taxid:10090)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 94/315 (29%), Positives = 148/315 (46%)

Query:    16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
             K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct:    21 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDEDRLHK-TGLRGRKGNLAICVIVLLFILA 78

Query:    76 LINXXXXXXXXXXXRIGW-GMETIEMLPL-LNMVKLYGDID-LGKLYKDDGYFSSFKDSG 132
             +IN           RIG  G +++E     L   K   D+  +  LYK        ++  
Sbjct:    79 VINLLITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKST--VGGRRNEN 136

Query:   133 LRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSA 192
             L ITG     V     F    T+  LS+E     +T+      +DP  H  +FST + + 
Sbjct:   137 LVITGNNQPIV-----FQQGTTK--LSVEKNKTSITSDIGMQFFDPRTHNILFSTDYETH 189

Query:   193 DFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDI 252
             +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +    D+
Sbjct:   190 EFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGDV 249

Query:   253 FLKSVNGSLTLAAENG-IFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKAD 311
              LK+ N S+ L   NG + +   +LP         S      +KLC+C  G  +F+V+  
Sbjct:   250 ELKAEN-SIIL---NGTVMVSPTRLPSSSSGDQSGSG-DWVRYKLCMCADG-TLFKVQ-- 301

Query:   312 DIMSHNACHNINTSP 326
              +  HN    ++ +P
Sbjct:   302 -VTGHNMGCQVSDNP 315

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=ISO

GO:0016012 "sarcoglycan complex" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0035051 "cardiocyte differentiation" evidence=IMP

RGD|1594202 Sgcb "sarcoglycan, beta (dystrophin-associated glycoprotein)" [Rattus norvegicus (taxid:10116)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 94/315 (29%), Positives = 148/315 (46%)

Query:    16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
             K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct:    21 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDEDRLHK-TGLRGRKGNLAICVIVLLFILA 78

Query:    76 LINXXXXXXXXXXXRIGW-GMETIEMLPL-LNMVKLYGDIDL-GKLYKDDGYFSSFKDSG 132
             +IN           RIG  G +++E     L   K   D+ +   LYK        ++  
Sbjct:    79 VINLLITLVIWAVIRIGPNGCDSLEFHESGLLRFKQVSDMGIIHPLYKST--VGGRRNEN 136

Query:   133 LRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSA 192
             L ITG     V     F    T+  LS+E     +T+      +DP     +FST + + 
Sbjct:   137 LVITGNNQPIV-----FQQGTTK--LSVEKNKTSITSDIGMQFFDPRTQNILFSTDYETH 189

Query:   193 DFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDI 252
             +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +    D+
Sbjct:   190 EFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMRGDV 249

Query:   253 FLKSVNGSLTLAAENG-IFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKAD 311
              LK+ N S+ L   NG + +   +LP         S      +KLC+C  G  +F+V+  
Sbjct:   250 ELKAEN-SIIL---NGTVMVSPTRLPSSSGGDQSGSG-DWVRYKLCMCADG-TLFKVQ-- 301

Query:   312 DIMSHNACHNINTSP 326
              + SHN    ++ +P
Sbjct:   302 -VTSHNMGCQVSDNP 315

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=ISO

GO:0016012 "sarcoglycan complex" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035051 "cardiocyte differentiation" evidence=IEA;ISO

UNIPROTKB|F1NLD5 SGCB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 96/321 (29%), Positives = 150/321 (46%)

Query:    16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
             K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct:    21 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDEDRLHK-TGLRGRKGNLAICVIVLLFILA 78

Query:    76 LINXXXXXXXXXXXRIGW-GMETIEMLPL-LNMVKLYGDID-LGKLYKDDGYFSSFKDSG 132
             +IN           RIG  G +++E     L   K   D+  +  LYK        ++  
Sbjct:    79 VINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKST--VGGRRNED 136

Query:   133 LRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSA 192
             L ITG     V     F    T+  LS+E +   +T+       DP     +FST + + 
Sbjct:   137 LVITGNNQPIV-----FQQGTTK--LSVEKDKTSITSDIGMEFVDPRTQNTLFSTDYETH 189

Query:   193 DFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDI 252
             +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +    ++
Sbjct:   190 EFHLPNGVKILNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFITGKTIEFRMGGNM 249

Query:   253 FLKSVNGSLTLAAENG-IFLEVKKLPFVKKN-LFLDSNLHNAAFKLCVCMPGGRIFRVKA 310
              LK+ N S+ L   NG + +   +LP       F + N     FKLC+C  G  +F+V+ 
Sbjct:   250 ELKAEN-SIIL---NGTVMVSPSRLPSSSYGEQFNNGNW--LRFKLCMCADG-TLFKVQ- 301

Query:   311 DDIMSHN-ACH-NINTSPEHH 329
               +  HN  C  ++N     H
Sbjct:   302 --VTGHNMGCQTSVNPCGATH 320

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0016012 "sarcoglycan complex" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035051 "cardiocyte differentiation" evidence=IEA

UNIPROTKB|F1P4K5 SGCB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 96/321 (29%), Positives = 150/321 (46%)

Query:    16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
             K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct:    13 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDEDRLHK-TGLRGRKGNLAICVIVLLFILA 70

Query:    76 LINXXXXXXXXXXXRIGW-GMETIEMLPL-LNMVKLYGDID-LGKLYKDDGYFSSFKDSG 132
             +IN           RIG  G +++E     L   K   D+  +  LYK        ++  
Sbjct:    71 VINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKST--VGGRRNED 128

Query:   133 LRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSA 192
             L ITG     V     F    T+  LS+E +   +T+       DP     +FST + + 
Sbjct:   129 LVITGNNQPIV-----FQQGTTK--LSVEKDKTSITSDIGMEFVDPRTQNTLFSTDYETH 181

Query:   193 DFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDI 252
             +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +    ++
Sbjct:   182 EFHLPNGVKILNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFITGKTIEFRMGGNM 241

Query:   253 FLKSVNGSLTLAAENG-IFLEVKKLPFVKKN-LFLDSNLHNAAFKLCVCMPGGRIFRVKA 310
              LK+ N S+ L   NG + +   +LP       F + N     FKLC+C  G  +F+V+ 
Sbjct:   242 ELKAEN-SIIL---NGTVMVSPSRLPSSSYGEQFNNGNW--LRFKLCMCADG-TLFKVQ- 293

Query:   311 DDIMSHN-ACH-NINTSPEHH 329
               +  HN  C  ++N     H
Sbjct:   294 --VTGHNMGCQTSVNPCGATH 312

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0016012 "sarcoglycan complex" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q16585 SGCB "Beta-sarcoglycan" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 93/315 (29%), Positives = 148/315 (46%)

Query:    16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
             K S+R+K + +R+ N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct:    19 KKSMREKAVERRSVNK-EHNSNFKAGYIPIDEDRLHK-TGLRGRKGNLAICVIILLFILA 76

Query:    76 LINXXXXXXXXXXXRIGW-GMETIEMLPL-LNMVKLYGDID-LGKLYKDDGYFSSFKDSG 132
             +IN           RIG  G +++E     L   K   D+  +  LYK        ++  
Sbjct:    77 VINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKST--VGGRRNEN 134

Query:   133 LRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSA 192
             L ITG     V     F    T+  LS+E     +T+      +DP     +FST + + 
Sbjct:   135 LVITGNNQPIV-----FQQGTTK--LSVENNKTSITSDIGMQFFDPRTQNILFSTDYETH 187

Query:   193 DFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDI 252
             +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +    ++
Sbjct:   188 EFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGNM 247

Query:   253 FLKSVNGSLTLAAENG-IFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKAD 311
              LK+ N S+ L   NG + +   +LP       L S      +KLC+C  G  +F+V+  
Sbjct:   248 ELKAEN-SIIL---NGSVMVSTTRLPSSSSGDQLGSG-DWVRYKLCMCADG-TLFKVQ-- 299

Query:   312 DIMSHNACHNINTSP 326
              + S N    I+ +P
Sbjct:   300 -VTSQNMGCQISDNP 313

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0016012 "sarcoglycan complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0035051 "cardiocyte differentiation" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0016010 "dystrophin-associated glycoprotein complex" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007517 "muscle organ development" evidence=TAS

UNIPROTKB|F1SE70 SGCB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 89/298 (29%), Positives = 140/298 (46%)

Query:    16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
             K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct:    20 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDEDRLHK-TGLRGRKGNLAICVIILLFILA 77

Query:    76 LINXXXXXXXXXXXRIGW-GMETIEMLPL-LNMVKLYGDID-LGKLYKDDGYFSSFKDSG 132
             +IN           RIG  G +++E     L   K   D+  +  LYK        ++  
Sbjct:    78 VINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKST--VGGRRNEN 135

Query:   133 LRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSA 192
             L ITG     V     F    T+  LS+E     +T+      +DP     +FST + + 
Sbjct:   136 LVITGNNQPIV-----FQQGTTK--LSVEKNKTSITSDIGMQFFDPRTQNILFSTDYETH 188

Query:   193 DFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDI 252
             +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +    ++
Sbjct:   189 EFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGNM 248

Query:   253 FLKSVNGSLTLAAENG-IFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVK 309
              LK+ N S+ L   NG + +   +LP         S      +KLC+C  G  +F+V+
Sbjct:   249 ELKAEN-SIIL---NGTVTVSTTRLPSSSSGDQFGSG-DWVRYKLCMCADG-TLFKVQ 300

GO:0035051 "cardiocyte differentiation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016012 "sarcoglycan complex" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

UNIPROTKB|F1PA70 SGCB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 88/298 (29%), Positives = 140/298 (46%)

Query:    16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
             K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct:    21 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDEDRLHK-TGLRGRKGNLAICVIILLFILA 78

Query:    76 LINXXXXXXXXXXXRIGW-GMETIEMLPL-LNMVKLYGDID-LGKLYKDDGYFSSFKDSG 132
             +IN           RIG  G +++E     L   K   D+  +  LYK        ++  
Sbjct:    79 VINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKST--VGGRRNEN 136

Query:   133 LRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSA 192
             L ITG     V     F    T+  LS+E     +T+      +DP     +FST + + 
Sbjct:   137 LVITGNNQPIV-----FQQGTTK--LSVEKNKTSITSDIGMQFFDPRTQNILFSTDYETH 189

Query:   193 DFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDI 252
             +F LP GVK L+VQ+  T RI S    DL ++ +    ++GNEG+ + G+TI +    ++
Sbjct:   190 EFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGNM 249

Query:   253 FLKSVNGSLTLAAENG-IFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVK 309
              LK+ N S+ L   NG + +   +LP         +      +KLC+C  G  +F+V+
Sbjct:   250 ELKAEN-SIIL---NGTVMVSTTRLPSSSSGDQFGAG-DWVRYKLCMCADG-TLFKVQ 301

GO:0035051 "cardiocyte differentiation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016012 "sarcoglycan complex" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

UNIPROTKB|A6QP70 SGCB "Beta-sarcoglycan" [Bos taurus (taxid:9913)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 88/298 (29%), Positives = 138/298 (46%)

Query:    16 KLSIRDKMLLKRNFNRLRHSENFQAGRVIEDPGGSPSHTGLHDGKSFTFWALIGLLYLFA 75
             K S+R+K + +RN N+  H+ NF+AG +  D       TGL   K      +I LL++ A
Sbjct:    18 KKSMREKAVERRNVNK-EHNSNFKAGYIPIDEDRLHK-TGLRGRKGNLAICVIVLLFILA 75

Query:    76 LINXXXXXXXXXXXRIGW-GMETIEMLPL-LNMVKLYGDID-LGKLYKDDGYFSSFKDSG 132
             +IN           RIG  G +++E     L   K   D+  +  LYK        ++  
Sbjct:    76 VINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKST--VGGRRNEN 133

Query:   133 LRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSA 192
             L ITG     V     F    T+  LS+      +T+      +DP     +FST + + 
Sbjct:   134 LVITGNNQPIV-----FQQGTTK--LSVGKNKTSITSDTGMQFFDPRTQNILFSTDYETH 186

Query:   193 DFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEGISMEGRTITWTADKDI 252
             +F LP GVK L+VQ+  T RI S    DL ++      ++GNEG+ + G+TI +    ++
Sbjct:   187 EFHLPSGVKSLNVQKASTERITSNATSDLNIKVGGRAIVRGNEGVFIMGKTIQFHMGGNM 246

Query:   253 FLKSVNGSLTLAAENG-IFLEVKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVK 309
              LK+ N S+ L   NG + +   +LP          +     +KLC+C  G  +FRV+
Sbjct:   247 ELKAEN-SIIL---NGTVMVSTNRLPSSSSGDQFGGD-DWVRYKLCMCADG-TLFRVQ 298

GO:0042383 "sarcolemma" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0035051 "cardiocyte differentiation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016012 "sarcoglycan complex" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28635	SGCB_RABIT	No assigned EC number	0.2914	0.8614	0.8993	yes	N/A
P82349	SGCB_MOUSE	No assigned EC number	0.2906	0.8795	0.9125	yes	N/A
Q5R9U1	SGCB_PONAB	No assigned EC number	0.2920	0.8765	0.9122	yes	N/A
Q16585	SGCB_HUMAN	No assigned EC number	0.2888	0.8765	0.9150	yes	N/A
A6QP70	SGCB_BOVIN	No assigned EC number	0.2874	0.8584	0.8990	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	332
pfam04790	264	pfam04790, Sarcoglycan_1, Sarcoglycan complex subu	4e-44

>gnl|CDD|218266 pfam04790, Sarcoglycan_1, Sarcoglycan complex subunit protein

 Score =  152 bits (385), Expect = 4e-44
 Identities = 78/269 (28%), Positives = 119/269 (44%), Gaps = 27/269 (10%)

Query: 54  TGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIGW-GMETIEMLPLLNMVKLYGD 112
            G++  +    +  + LL L A++NL LTL ++ ++R G  GM  +E+     +    G+
Sbjct: 4   VGIYGWRKRCLYTFVLLLLLLAVVNLALTLWILKVMRFGPDGMGNLEITE-DGLRLFEGE 62

Query: 113 ID-LGKLYKDDGYFSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVK 171
            D L  LY         +D  L I   +  +V+     G    +  LS+  +G+     K
Sbjct: 63  SDFLQPLYA--KEIHGRRDEPLLIQSNRNVTVNARNRNGNVTNK--LSVGKDGIVEAATK 118

Query: 172 EFNVYDPTDHLPIFSTGFRSADFG-------LPRGVKKLDVQQVRTSRIISPIEDDLTLR 224
            F V DP D   +FS        G        P G   L    V T RI SP   DL L 
Sbjct: 119 GFEVKDPVDGKLLFSADRDEVVVGAERLRVTGPEGA--LFEHSVETPRIRSPPNKDLRLE 176

Query: 225 SETYT-RLKGNEGISMEGRT--ITWTADKDIFLKSVNGSLTLAAENGIFLEVKKLPFVKK 281
           S T +  +   EG++++ +   I +TA  DI L+S +GS+ L A   + L   +LP    
Sbjct: 177 SPTRSLSMDAPEGVNIDAKAGNIEFTALTDINLRSKDGSIVLDAS-SVML--NRLPISSG 233

Query: 282 NLFLDSNLHNAAFKLCVCMPGGRIFRVKA 310
               +S      +KLCVC P G++F V A
Sbjct: 234 ----ESGSRQGQYKLCVC-PDGKLFLVAA 257

The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members. Length = 264

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG3950|consensus	292		100.0
PF04790	264	Sarcoglycan_1: Sarcoglycan complex subunit protein	100.0
PF04790	264	Sarcoglycan_1: Sarcoglycan complex subunit protein	97.46
PF10106	155	DUF2345: Uncharacterized protein conserved in bact	92.6
KOG3950|consensus	292		92.56
PF10106	155	DUF2345: Uncharacterized protein conserved in bact	86.71

>KOG3950|consensus

Probab=100.00  E-value=1.6e-86  Score=612.32  Aligned_cols=259  Identities=24%  Similarity=0.396  Sum_probs=245.7

Q ss_pred             CCCCcccceeecchhhHHHHHHHHHHHHHHHHHHHHHHhheeeeeC-CCCceeEEEecCCeEEEeeeeece-eeeeecce
Q psy6704          47 PGGSPSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIG-WGMETIEMLPLLNMVKLYGDIDLG-KLYKDDGY  124 (332)
Q Consensus        47 ~~~~l~~~Gi~GwRk~cly~~vllL~il~viNL~LTiwIl~VL~~~-~GMg~L~~~~~~~~vr~~G~~~f~-~l~~~~g~  124 (332)
                      .+.++|++|||||||||||+|||||||++|+||+|||||++||||+ +|||+|+|++  +|||++|+++|+ +||++  +
T Consensus        20 ~~~~~y~vGiyGWRKrcLY~fvLlL~i~ivvNLalTiWIlkVm~Fs~dGmG~Lkit~--~GirleG~sefl~pl~ak--e   95 (292)
T KOG3950|consen   20 VGAQVYKVGIYGWRKRCLYTFVLLLMILIVVNLALTIWILKVMNFSPDGMGNLKITK--KGIRLEGDSEFLQPLYAK--E   95 (292)
T ss_pred             CCceEEEEEeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccceEEcc--CcEEEechhhhhhhhhhh--h
Confidence            6899999999999999999999999999999999999999999999 9999999988  799999999997 89996  9


Q ss_pred             eeecCCCCeEEEeeCCcCEEEEeecCCCceeeeEEEcCCceEEEeeeeEEEeCCCCCceeEEecCCcceEecCCccccee
Q psy6704         125 FSSFKDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHLPIFSTGFRSADFGLPRGVKKLD  204 (332)
Q Consensus       125 I~s~~d~~L~i~S~~~~~V~l~~~~~~g~~~~~L~v~~~~~~~~~~~~F~V~d~~~g~~lFsad~~~~ev~ip~g~~~L~  204 (332)
                      |+|++|+||.++|+|  ||+||+||.+|+++++|+++++++++++ ++|||+|. +||+||+||+  .|+++  |+++|+
T Consensus        96 i~Sr~~~~l~~~S~r--nvtvnarn~~g~v~~~l~lgp~~ve~~~-~~Fev~~~-dgk~LFsad~--dEv~v--gae~LR  167 (292)
T KOG3950|consen   96 IHSRPGSPLYLQSAR--NVTVNARNPNGKVTGQLILGPKKVEAQC-KRFEVNDV-DGKLLFSADE--DEVVV--GAEKLR  167 (292)
T ss_pred             hhcCCCCceEEEecc--CeeEEccCCCCceeeeEEechHHHhhhh-ceeEEecC-CCcEEEEecc--ceeEe--eeeeeE
Confidence            999999999999999  9999999999999999999999999998 99999998 8999999999  49999  999999


Q ss_pred             ---------eeeEEeceeecCCCCCceEeecce-EEEEcCceeEEEece--EEEEeecceEEEecCceEEEecCCceEEe
Q psy6704         205 ---------VQQVRTSRIISPIEDDLTLRSETY-TRLKGNEGISMEGRT--ITWTADKDIFLKSVNGSLTLAAENGIFLE  272 (332)
Q Consensus       205 ---------~~~V~T~~Irs~~~~~L~LeS~tr-L~~~g~eGV~i~a~~--i~~~a~~dI~L~S~~G~i~Lda~~gI~i~  272 (332)
                               .|+||||+|||+|+++|||||||| |+|+||+||+|.|+|  |++.|.+||.|+|.||+|+|||++   |.
T Consensus       168 v~g~~GavF~~sveTp~VRa~P~~~LRLESPTRsl~m~Apk~v~i~a~AG~iea~~~~di~~~s~dGeirLeas~---I~  244 (292)
T KOG3950|consen  168 VLGAEGAVFEHSVETPHVRADPFQELRLESPTRSLSMEAPKGVEIQAAAGNIEATCLTDLRLESKDGEIRLEASK---IR  244 (292)
T ss_pred             eccCCcccccccccCCcccCCCCccccccCCcceeeeecCCCceeeeccCCceEEEeeeeeEeccCceEEEeece---ee
Confidence                     489999999999999999999999 999999999999998  777788999999999999999999   77


Q ss_pred             cCCcccccccccccCCCCCcceEEeEecCCCeEEEEecCCCCccceeeccCCCCCCCCCC
Q psy6704         273 VKKLPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNACHNINTSPEHHPCR  332 (332)
Q Consensus       273 ~~~LP~~~~~~~~~s~~~~~~yklCvC~p~GkLFlv~~~~~~~~~tC~~~~~~~~~~pC~  332 (332)
                      |++||.++.+   ++++.|.+||+||| ||||||+++|+.+   ++|+     .++++|.
T Consensus       245 lp~L~~g~~~---psgS~q~v~eiCvC-~nGkLfLs~Ag~~---stCq-----~~s~iC~  292 (292)
T KOG3950|consen  245 LPKLPTGSYT---PSGSRQKVFEICVC-PNGKLFLSQAGPG---STCQ-----IDSSICL  292 (292)
T ss_pred             cccccCCCCC---CCCCcceEEEEEEe-cCCcEEEeccCCC---Cccc-----ccccccC
Confidence            8999999744   66777899999999 7999999999876   7997     7889994

>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle

Probab=100.00  E-value=6e-84  Score=609.81  Aligned_cols=249  Identities=33%  Similarity=0.554  Sum_probs=230.3

Q ss_pred             cccceeecchhhHHHHHHHHHHHHHHHHHHHHHHhheeeeeC-CCCceeEEEecCCeEEEeeeeece-eeeeecceeeec
Q psy6704          51 PSHTGLHDGKSFTFWALIGLLYLFALINLVLTLTLMTMLRIG-WGMETIEMLPLLNMVKLYGDIDLG-KLYKDDGYFSSF  128 (332)
Q Consensus        51 l~~~Gi~GwRk~cly~~vllL~il~viNL~LTiwIl~VL~~~-~GMg~L~~~~~~~~vr~~G~~~f~-~l~~~~g~I~s~  128 (332)
                      +|+||||||||||||+||+||||++|+||||||||++||||+ +|||+|||+++ +.++|+|++||. ++|+  ++|+||
T Consensus         1 ~~~~Gi~Gwrk~cly~~vllL~il~iiNL~LTiwIl~Vl~~~~~Gm~~l~~~~~-g~~~f~g~~~~~~~l~~--~~I~s~   77 (264)
T PF04790_consen    1 LYKTGIYGWRKRCLYLFVLLLFILAIINLALTIWILKVLRFSSNGMGSLEFIPD-GLRLFEGESEFLQPLYA--SEIHSF   77 (264)
T ss_pred             CcccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhhheeeecccCccccEEEecC-CeEEEcCceeEeeeeee--ceeeee
Confidence            689999999999999999999999999999999999999999 99999999985 556669999996 7888  599999


Q ss_pred             CCCCeEEEeeCCcCEEEEeecCCCceeeeEEEcCCc-eEEEeeeeEEEeCCCCCceeEEecCCcce---------EecCC
Q psy6704         129 KDSGLRITGRQGGSVHIDVNFGVNRTRRMLSIEPEG-VRVTNVKEFNVYDPTDHLPIFSTGFRSAD---------FGLPR  198 (332)
Q Consensus       129 ~d~~L~i~S~~~~~V~l~~~~~~g~~~~~L~v~~~~-~~~~~~~~F~V~d~~~g~~lFsad~~~~e---------v~ip~  198 (332)
                      +|+||+|+|++  ||++++||++|+.++||+|++++ ++.++ ++|+|+||++|++||+||+  |+         |+.|+
T Consensus        78 ~d~~l~i~s~~--~v~~~~r~~~g~~~~~l~v~~~~~v~~~~-~~F~V~d~~~g~~lFsad~--~~v~v~~~~lrv~~~~  152 (264)
T PF04790_consen   78 RDSPLVIQSSR--NVTLNARNENGSVTSRLVVGPDGTVEAQS-NRFEVKDPRDGKTLFSADR--PEVVVGAEKLRVTGPE  152 (264)
T ss_pred             cCCCEEEEecC--ceEEEEecCCCcccceEEECCCccEEEec-CeEEEEcCCCCceEEEecC--CceEEeeeeEEecCCc
Confidence            99999999987  99999999999999999999999 55555 9999999999999999999  67         67788


Q ss_pred             cccceeeeeEEeceeecCCCCCceEeecce-EEEEcCceeEEEece--EEEEeecceEEEecCceEEEecCCceEEecCC
Q psy6704         199 GVKKLDVQQVRTSRIISPIEDDLTLRSETY-TRLKGNEGISMEGRT--ITWTADKDIFLKSVNGSLTLAAENGIFLEVKK  275 (332)
Q Consensus       199 g~~~L~~~~V~T~~Irs~~~~~L~LeS~tr-L~~~g~eGV~i~a~~--i~~~a~~dI~L~S~~G~i~Lda~~gI~i~~~~  275 (332)
                      |+  |.+++||||+||||+++||+|||||| |+|+|||||+|+|++  |+|+|.+||+|+|++|+|+|||+ |||+  ++
T Consensus       153 G~--l~~~~v~T~~Irs~~~~~L~leS~trsL~~~a~egV~i~a~ag~I~~~a~~di~L~S~~G~i~Lda~-~I~l--~~  227 (264)
T PF04790_consen  153 GA--LFEKSVQTPRIRSPPNEDLRLESPTRSLSMRAPEGVHIEAKAGDIEASARQDISLNSTDGSIVLDAE-GIRL--PN  227 (264)
T ss_pred             cE--EEeeeEEeccccCCCCcccccccCCcEEEEECCCCeEEEeccCcEEEEecCCEEEEecCCeEEEecC-eEEe--CC
Confidence            88  88999999999999999999999999 999999999999999  99999999999999999999995 5776  59


Q ss_pred             cccccccccccCCCCCcceEEeEecCCCeEEEEecCCCCccceee
Q psy6704         276 LPFVKKNLFLDSNLHNAAFKLCVCMPGGRIFRVKADDIMSHNACH  320 (332)
Q Consensus       276 LP~~~~~~~~~s~~~~~~yklCvC~p~GkLFlv~~~~~~~~~tC~  320 (332)
                      ||+++++    ++.++.+|||||| |+|||||+|++.+   .|||
T Consensus       228 LP~~~~~----~~~~~~~y~lCvC-~~GkLF~v~~~~~---~~c~  264 (264)
T PF04790_consen  228 LPISSSP----SGSRQGQYKLCVC-PNGKLFLVPAGSG---STCQ  264 (264)
T ss_pred             CccCCCC----CCCCCccEEEEEC-CCCCEEEeeCCCC---CCCC
Confidence            9999865    3444569999999 8999999999998   4795

The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane

>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle

Probab=97.46  E-value=0.011  Score=56.77  Aligned_cols=135  Identities=15%  Similarity=0.186  Sum_probs=75.2

Q ss_pred             cceeecchhhHHHHHHHHHHHHHHHHHHH---HHHhh----eeeeeC-CCCceeEEEecCCeEEEeeeeeceeeeeecc-
Q psy6704          53 HTGLHDGKSFTFWALIGLLYLFALINLVL---TLTLM----TMLRIG-WGMETIEMLPLLNMVKLYGDIDLGKLYKDDG-  123 (332)
Q Consensus        53 ~~Gi~GwRk~cly~~vllL~il~viNL~L---TiwIl----~VL~~~-~GMg~L~~~~~~~~vr~~G~~~f~~l~~~~g-  123 (332)
                      -.|+|.|=.||+.+++++|+|+-++=-+.   .+||-    .-|+|. +|  -.+|..+.+.++   ......+....+ 
T Consensus         6 i~Gwrk~cly~~vllL~il~iiNL~LTiwIl~Vl~~~~~Gm~~l~~~~~g--~~~f~g~~~~~~---~l~~~~I~s~~d~   80 (264)
T PF04790_consen    6 IYGWRKRCLYLFVLLLFILAIINLALTIWILKVLRFSSNGMGSLEFIPDG--LRLFEGESEFLQ---PLYASEIHSFRDS   80 (264)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhheeeecccCccccEEEecCC--eEEEcCceeEee---eeeeceeeeecCC
Confidence            36999999999999999988875544322   34443    458999 64  344322112211   111111111100 


Q ss_pred             --eeeecCCCCeEEEe-eCCcC------------E-----EEEeecC-CCceeeeEEEcCCceEEEeeeeEEEeCCCCCc
Q psy6704         124 --YFSSFKDSGLRITG-RQGGS------------V-----HIDVNFG-VNRTRRMLSIEPEGVRVTNVKEFNVYDPTDHL  182 (332)
Q Consensus       124 --~I~s~~d~~L~i~S-~~~~~------------V-----~l~~~~~-~g~~~~~L~v~~~~~~~~~~~~F~V~d~~~g~  182 (332)
                        +|+|  ++++.+.. ++++.            +     .+.+++. .|.  .-++.+.+.+++.+ +.++|..| .|.
T Consensus        81 ~l~i~s--~~~v~~~~r~~~g~~~~~l~v~~~~~v~~~~~~F~V~d~~~g~--~lFsad~~~v~v~~-~~lrv~~~-~G~  154 (264)
T PF04790_consen   81 PLVIQS--SRNVTLNARNENGSVTSRLVVGPDGTVEAQSNRFEVKDPRDGK--TLFSADRPEVVVGA-EKLRVTGP-EGA  154 (264)
T ss_pred             CEEEEe--cCceEEEEecCCCcccceEEECCCccEEEecCeEEEEcCCCCc--eEEEecCCceEEee-eeEEecCC-ccE
Confidence              2455  44444433 11111            1     1233454 344  46677777888888 99999998 454


Q ss_pred             eeEEecCCcceEecCCc
Q psy6704         183 PIFSTGFRSADFGLPRG  199 (332)
Q Consensus       183 ~lFsad~~~~ev~ip~g  199 (332)
                       +|.-.-++|-+.-|.+
T Consensus       155 -l~~~~v~T~~Irs~~~  170 (264)
T PF04790_consen  155 -LFEKSVQTPRIRSPPN  170 (264)
T ss_pred             -EEeeeEEeccccCCCC
Confidence             8887776666665533

The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane

>PF10106 DUF2345: Uncharacterized protein conserved in bacteria (DUF2345); InterPro: IPR018769 This entry represents the C-terminal domain of a subset of the Rhs element Vgr protein family found only in genomes with type VI secretion loci

Probab=92.60  E-value=0.15  Score=45.07  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=19.9

Q ss_pred             EEEEcCceeEEEe--ceEEEEeecceEEEecCceEEEecCC
Q psy6704         229 TRLKGNEGISMEG--RTITWTADKDIFLKSVNGSLTLAAEN  267 (332)
Q Consensus       229 L~~~g~eGV~i~a--~~i~~~a~~dI~L~S~~G~i~Lda~~  267 (332)
                      +.+.+.+.|+|.+  ..|.++|.+.|.|+...+.|+|++++
T Consensus        92 ~~l~A~k~i~i~S~~~~I~i~A~~~I~l~~ggs~i~l~gg~  132 (155)
T PF10106_consen   92 MELTAKKDITITSTEGKIVITAKKEITLNAGGSYIRLSGGG  132 (155)
T ss_pred             hhhhccCcEEEEECCCcEEEEecCcEEEecCCcEEEEeCCc
Confidence            4445555555555  23555555555555555555555443

However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often encoded far from the type VI secretion locus.

>KOG3950|consensus

Probab=92.56  E-value=3.9  Score=39.49  Aligned_cols=189  Identities=16%  Similarity=0.213  Sum_probs=110.7

Q ss_pred             CCCCcccceeecchhhHHHHHHHHHHHHHHH--HHHHHHHh-----heeeeeC-CCCceeEEEecCCeEEEeeeeeceee
Q psy6704          47 PGGSPSHTGLHDGKSFTFWALIGLLYLFALI--NLVLTLTL-----MTMLRIG-WGMETIEMLPLLNMVKLYGDIDLGKL  118 (332)
Q Consensus        47 ~~~~l~~~Gi~GwRk~cly~~vllL~il~vi--NL~LTiwI-----l~VL~~~-~GMg~L~~~~~~~~vr~~G~~~f~~l  118 (332)
                      ....+--.|||-|=.|.|.+++++|+|+-+.  =-+|-+.=     |.-|++. +|+   ++ +  +--+|.--..+-.+
T Consensus        23 ~~y~vGiyGWRKrcLY~fvLlL~i~ivvNLalTiWIlkVm~Fs~dGmG~Lkit~~Gi---rl-e--G~sefl~pl~akei   96 (292)
T KOG3950|consen   23 QVYKVGIYGWRKRCLYTFVLLLMILIVVNLALTIWILKVMNFSPDGMGNLKITKKGI---RL-E--GDSEFLQPLYAKEI   96 (292)
T ss_pred             eEEEEEeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccceEEccCcE---EE-e--chhhhhhhhhhhhh
Confidence            4667777999999999999999888876443  33444333     3448888 775   33 1  12222222222222


Q ss_pred             eeecc---eeeecCCCCeEEEeeCCcCEE----------------EEeecCCCceeeeEEEcCCceEEEeeeeEEEeCCC
Q psy6704         119 YKDDG---YFSSFKDSGLRITGRQGGSVH----------------IDVNFGVNRTRRMLSIEPEGVRVTNVKEFNVYDPT  179 (332)
Q Consensus       119 ~~~~g---~I~s~~d~~L~i~S~~~~~V~----------------l~~~~~~g~~~~~L~v~~~~~~~~~~~~F~V~d~~  179 (332)
                      ....+   .++|+++..+...-++ +.|+                +.+++.+|.  .-.+++.|.+.+.. ...+|..+ 
T Consensus        97 ~Sr~~~~l~~~S~rnvtvnarn~~-g~v~~~l~lgp~~ve~~~~~Fev~~~dgk--~LFsad~dEv~vga-e~LRv~g~-  171 (292)
T KOG3950|consen   97 HSRPGSPLYLQSARNVTVNARNPN-GKVTGQLILGPKKVEAQCKRFEVNDVDGK--LLFSADEDEVVVGA-EKLRVLGA-  171 (292)
T ss_pred             hcCCCCceEEEeccCeeEEccCCC-CceeeeEEechHHHhhhhceeEEecCCCc--EEEEeccceeEeee-eeeEeccC-
Confidence            22111   1566666666665555 3232                334455666  57888999998888 88999886 


Q ss_pred             CCceeEEecCCcceEecCCcccceeeeeEEeceeecCCCCCceEeecceEEEEcCce-eEEEece-EEEEee-cceEEEe
Q psy6704         180 DHLPIFSTGFRSADFGLPRGVKKLDVQQVRTSRIISPIEDDLTLRSETYTRLKGNEG-ISMEGRT-ITWTAD-KDIFLKS  256 (332)
Q Consensus       180 ~g~~lFsad~~~~ev~ip~g~~~L~~~~V~T~~Irs~~~~~L~LeS~trL~~~g~eG-V~i~a~~-i~~~a~-~dI~L~S  256 (332)
                       |-.+|--.-++|.|.-..+-+ |+   .|     | |...|.++.|.-+.+.|.-| +...+.. +.+++. ..|+|+|
T Consensus       172 -~GavF~~sveTp~VRa~P~~~-LR---LE-----S-PTRsl~m~Apk~v~i~a~AG~iea~~~~di~~~s~dGeirLea  240 (292)
T KOG3950|consen  172 -EGAVFEHSVETPHVRADPFQE-LR---LE-----S-PTRSLSMEAPKGVEIQAAAGNIEATCLTDLRLESKDGEIRLEA  240 (292)
T ss_pred             -CcccccccccCCcccCCCCcc-cc---cc-----C-CcceeeeecCCCceeeeccCCceEEEeeeeeEeccCceEEEee
Confidence             448887777666665322221 22   11     1 45566666666655554433 4444443 666554 4677776


Q ss_pred             c
Q psy6704         257 V  257 (332)
Q Consensus       257 ~  257 (332)
                      +
T Consensus       241 s  241 (292)
T KOG3950|consen  241 S  241 (292)
T ss_pred             c
Confidence            6

>PF10106 DUF2345: Uncharacterized protein conserved in bacteria (DUF2345); InterPro: IPR018769 This entry represents the C-terminal domain of a subset of the Rhs element Vgr protein family found only in genomes with type VI secretion loci

Probab=86.71  E-value=1.7  Score=38.54  Aligned_cols=43  Identities=28%  Similarity=0.521  Sum_probs=20.9

Q ss_pred             EEEEcCce-eEEEec--eEEEEeecceEEEecCceEEEecCCceEE
Q psy6704         229 TRLKGNEG-ISMEGR--TITWTADKDIFLKSVNGSLTLAAENGIFL  271 (332)
Q Consensus       229 L~~~g~eG-V~i~a~--~i~~~a~~dI~L~S~~G~i~Lda~~gI~i  271 (332)
                      +.+-+.+| |.|+|.  .+++.|.+||.|.|.++.|.|.|.+.|.|
T Consensus        74 i~liA~~G~v~iqAq~~~~~l~A~k~i~i~S~~~~I~i~A~~~I~l  119 (155)
T PF10106_consen   74 IKLIAAQGKVEIQAQSDDMELTAKKDITITSTEGKIVITAKKEITL  119 (155)
T ss_pred             eeEEEcCCcEEEEEcCCchhhhccCcEEEEECCCcEEEEecCcEEE
Confidence            44444443 445443  25555555555555555555555444443

However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often encoded far from the type VI secretion locus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00