Psyllid ID: psy6778

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MHFLKLLCVPLLIGAVCGEKIDLNSDPCYENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECK
cHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccEEEEEEEcccEEEEEEEEEEEcccccccccEEEEEcccccccEEEcEEcHHHHHHHHcccccccccccccccEEEccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccEEEEEccccccccccEEEEcccEEEccccccccccccccccccccccccEEEcccccccccccccccccEEEEEEcccEEEEEEEEEEEcccccccccEEEEEEcccccccEEEEEEcHHHHHHccccccccccccccccEEEcccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccEEEEcccccccccHHHcccccccccccccccccccccc
MHFLKLLCVPLLIGavcgekidlnsdpcyengrprrcipdfvnaafGQEVKvnsvcglesperycdtsgachvcdagsprgrfpaeyltdlnnpsnvtcwrseAQTSvnslsaspdnvTLTLSLGKKFELTYIslsfcpksikpdslaiyksqdfgkswqplqfySSQCKKlygrtatgvisrgneqealctdrhkkqggrckcnghasrcikspqgelvcecrhntagkdcekckpffsdrpwgratvydaneckggrckcnghasrcikspqgalvcecrhntagkdcekckpffsdrpwgratvydaneck
MHFLKLLCVPLLIGAVCGEKIDLNSDPCYENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSvnslsaspdnVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEalctdrhkkqggrckcnghasrcikspqgeLVCECRHntagkdcekckpffsdrpwgraTVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHntagkdcekckpffsdrpwgratvydaneck
MHFLKLLCVPLLIGAVCGEKIDLNSDPCYENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECK
**FLKLLCVPLLIGAVCGEKIDLNSDPCYENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRS**************NVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTD*****GGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATVY******
MHFLKLLCVPLLIGAVCGEKI******CYENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHAS*****PQ*ALVCECRHNTAGKDCEKCKPFFSDRPWGRATV****ECK
MHFLKLLCVPLLIGAVCGEKIDLNSDPCYENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALC***************HASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECK
MHFLKLLCVPLLIGAVCGEKIDLNSDPCYENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRAT******C*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHFLKLLCVPLLIGAVCGEKIDLNSDPCYENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
Q90922 606 Netrin-1 OS=Gallus gallus yes N/A 0.872 0.452 0.477 3e-70
Q2HXW4 600 Netrin-1 OS=Sus scrofa GN yes N/A 0.936 0.49 0.460 4e-70
O95631 604 Netrin-1 OS=Homo sapiens yes N/A 0.872 0.453 0.477 1e-69
O09118 604 Netrin-1 OS=Mus musculus yes N/A 0.869 0.451 0.479 2e-69
Q924Z9 604 Netrin-1 OS=Rattus norveg yes N/A 0.869 0.451 0.479 2e-69
Q90923 581 Netrin-3 (Fragment) OS=Ga no N/A 0.859 0.464 0.459 3e-64
P34710 612 Netrin unc-6 OS=Caenorhab yes N/A 0.894 0.459 0.423 3e-61
Q24568 793 Netrin-B OS=Drosophila me yes N/A 0.550 0.218 0.584 2e-54
A0JP86 1592 Laminin subunit gamma-1 O no N/A 0.878 0.173 0.392 7e-51
P11047 1609 Laminin subunit gamma-1 O no N/A 0.866 0.169 0.401 2e-50
>sp|Q90922|NET1_CHICK Netrin-1 OS=Gallus gallus GN=NTN1 PE=1 SV=1 Back     alignment and function desciption
 Score =  265 bits (677), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/314 (47%), Positives = 195/314 (62%), Gaps = 40/314 (12%)

Query: 26  DPCY-ENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYC-------DTSGACHVCDAG 77
           DPCY E+G PRRCIPDFVN+AFG+EVKV+S CG + P RYC       +   +CH+C+A 
Sbjct: 41  DPCYDEHGLPRRCIPDFVNSAFGKEVKVSSTCG-KPPSRYCVVTEKGEEQVRSCHLCNAS 99

Query: 78  SPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSF 137
            P+   P  +LTDLNNP N+TCW+S+      S    P NVTLTLSLGKKFE+TY+SL F
Sbjct: 100 DPKRAHPPSFLTDLNNPHNLTCWQSD------SYVQYPHNVTLTLSLGKKFEVTYVSLQF 153

Query: 138 CPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKK 197
           C  S +P+S+AIYKS D+GK+W P QFYS+QC+K+Y + +   I++ NEQEA+CTD H  
Sbjct: 154 C--SPRPESMAIYKSMDYGKTWVPFQFYSTQCRKMYNKPSRAAITKQNEQEAICTDSHTD 211

Query: 198 ----QGGRCKCNGHASRCI-----KSPQGE--------LVCECRHNTAGKDCEKCKPFFS 240
                GG    +    R        SP  +         V   R +T G + E       
Sbjct: 212 VRPLSGGLIAFSTLDGRPTAHDFDNSPVLQDWVTATDIKVTFSRLHTFGDENEDDSELAR 271

Query: 241 DRPWGRATVYDANECK-GGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSD 299
           D     +  Y  ++ + GGRCKCNGHASRC++     LVC+C+HNTAG +C++CKPF  D
Sbjct: 272 D-----SYFYAVSDLQVGGRCKCNGHASRCVRDRDDNLVCDCKHNTAGPECDRCKPFHYD 326

Query: 300 RPWGRATVYDANEC 313
           RPW RAT  +ANEC
Sbjct: 327 RPWQRATAREANEC 340
Netrins control guidance of CNS commissural axons and peripheral motor axons. Promotes neurite outgrowth from commissural axons but acts as a chemorepellent for trochlear motor axons. These effects are mediated by distinct receptors.
Gallus gallus (taxid: 9031)
>sp|Q2HXW4|NET1_PIG Netrin-1 OS=Sus scrofa GN=NTN1 PE=2 SV=1 Back     alignment and function description
>sp|O95631|NET1_HUMAN Netrin-1 OS=Homo sapiens GN=NTN1 PE=1 SV=2 Back     alignment and function description
>sp|O09118|NET1_MOUSE Netrin-1 OS=Mus musculus GN=Ntn1 PE=1 SV=3 Back     alignment and function description
>sp|Q924Z9|NET1_RAT Netrin-1 OS=Rattus norvegicus GN=Ntn1 PE=1 SV=1 Back     alignment and function description
>sp|Q90923|NET3_CHICK Netrin-3 (Fragment) OS=Gallus gallus GN=NTN3 PE=2 SV=1 Back     alignment and function description
>sp|P34710|UNC6_CAEEL Netrin unc-6 OS=Caenorhabditis elegans GN=unc-6 PE=1 SV=1 Back     alignment and function description
>sp|Q24568|NETB_DROME Netrin-B OS=Drosophila melanogaster GN=NetB PE=1 SV=1 Back     alignment and function description
>sp|A0JP86|LAMC1_XENTR Laminin subunit gamma-1 OS=Xenopus tropicalis GN=lamc1 PE=2 SV=1 Back     alignment and function description
>sp|P11047|LAMC1_HUMAN Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
383863533 637 PREDICTED: netrin-1-like [Megachile rotu 0.955 0.470 0.495 1e-86
350399310 652 PREDICTED: LOW QUALITY PROTEIN: netrin-B 0.901 0.434 0.506 3e-86
170067345374 netrin [Culex quinquefasciatus] gi|16786 0.920 0.772 0.469 1e-78
157133732377 netrin [Aedes aegypti] gi|108881492|gb|E 0.920 0.766 0.472 1e-78
357625064336 putative netrin 1a [Danaus plexippus] 0.872 0.815 0.495 1e-75
241057106364 netrin, putative [Ixodes scapularis] gi| 0.891 0.769 0.507 2e-73
259013386 596 netrin1 precursor [Saccoglossus kowalevs 0.863 0.454 0.523 3e-73
410917131 606 PREDICTED: netrin-1-like [Takifugu rubri 0.869 0.450 0.495 1e-71
6966928 555 amphinetrin [Branchiostoma floridae] 0.856 0.484 0.481 1e-71
47213869 640 unnamed protein product [Tetraodon nigro 0.872 0.428 0.493 3e-71
>gi|383863533|ref|XP_003707235.1| PREDICTED: netrin-1-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/357 (49%), Positives = 211/357 (59%), Gaps = 57/357 (15%)

Query: 3   FLKLLCVPLLI---GAVCGEKI--------DLNSDPCYENGRPRRCIPDFVNAAFGQEVK 51
              LLCV LL+     + G +I           SDPCY+  RPRRCIPDFVNAAFG  V+
Sbjct: 7   MFGLLCVILLLQQGNTLAGSEIYSKMFSSQQHPSDPCYDEDRPRRCIPDFVNAAFGAVVE 66

Query: 52  VNSVCGLESPERYCDTS---------GACHVCDAGSPRGRFPAEYLTDLNNPSNVTCWRS 102
            +S CG   P RYCD +         G CH+CD  +PR RFPA YLTDLNN +NVTCWRS
Sbjct: 67  ASSTCGTGGPTRYCDVTEQPGGGTGIGQCHICDDSTPRRRFPASYLTDLNNSNNVTCWRS 126

Query: 103 EAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPL 162
           E   +  S SA PDNVTLTLSLGKK+ELTY+SL FCPK+ KPDS+AIYKS D+GK+WQP 
Sbjct: 127 EPLVTSQSFSAPPDNVTLTLSLGKKYELTYVSLQFCPKAAKPDSIAIYKSMDYGKTWQPF 186

Query: 163 QFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQGGRCKCNGHASRCIKSPQGELVCE 222
           QFYSSQC+++YGR     I++ NEQEA CTD H+  GG    +G        P G +   
Sbjct: 187 QFYSSQCRRVYGRPNRATITKANEQEARCTDSHRYTGG----DGLG------PVGRIAFS 236

Query: 223 CRHNTAGKDCEKCKPFFSDRPWGRAT----VYD---------------------ANECKG 257
                         P   D  W  AT    V++                     ++   G
Sbjct: 237 TLEGRPSASDFDNSPVLQD--WVTATDVRVVFNRLHMPTISSAGTSTFAHHYAVSDFAVG 294

Query: 258 GRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECK 314
           GRCKCNGHA+RCI    G + CECRHNTAG+DCE+C+PF  DRPW RAT  DANECK
Sbjct: 295 GRCKCNGHAARCIPGKDGEVACECRHNTAGRDCERCRPFHFDRPWARATARDANECK 351

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350399310|ref|XP_003485486.1| PREDICTED: LOW QUALITY PROTEIN: netrin-B-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|170067345|ref|XP_001868444.1| netrin [Culex quinquefasciatus] gi|167863502|gb|EDS26885.1| netrin [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157133732|ref|XP_001662987.1| netrin [Aedes aegypti] gi|108881492|gb|EAT45717.1| AAEL003047-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|357625064|gb|EHJ75617.1| putative netrin 1a [Danaus plexippus] Back     alignment and taxonomy information
>gi|241057106|ref|XP_002407808.1| netrin, putative [Ixodes scapularis] gi|215492299|gb|EEC01940.1| netrin, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|259013386|ref|NP_001158400.1| netrin1 precursor [Saccoglossus kowalevskii] gi|90660003|gb|ABD97277.1| netrin1 [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|410917131|ref|XP_003972040.1| PREDICTED: netrin-1-like [Takifugu rubripes] Back     alignment and taxonomy information
>gi|6966928|emb|CAB72422.1| amphinetrin [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|47213869|emb|CAF94019.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
ZFIN|ZDB-GENE-990415-169 603 ntn1a "netrin 1a" [Danio rerio 0.512 0.266 0.573 9.2e-86
ZFIN|ZDB-GENE-990415-168 602 ntn1b "netrin 1b" [Danio rerio 0.512 0.267 0.561 5.7e-84
UNIPROTKB|F1PSP7 603 NTN1 "Uncharacterized protein" 0.576 0.300 0.541 8.3e-83
UNIPROTKB|O95631 604 NTN1 "Netrin-1" [Homo sapiens 0.576 0.299 0.536 1.1e-82
RGD|619809 604 Ntn1 "netrin 1" [Rattus norveg 0.576 0.299 0.531 1.1e-82
UNIPROTKB|F1LPC8 604 Ntn1 "Netrin-1" [Rattus norveg 0.576 0.299 0.531 1.1e-82
MGI|MGI:105088 604 Ntn1 "netrin 1" [Mus musculus 0.576 0.299 0.531 1.1e-82
ZFIN|ZDB-GENE-050310-2 600 ntn2 "netrin 2" [Danio rerio ( 0.515 0.27 0.577 1.1e-82
FB|FBgn0015773 726 NetA "Netrin-A" [Drosophila me 0.515 0.223 0.563 5.3e-81
FB|FBgn0015774 793 NetB "Netrin-B" [Drosophila me 0.605 0.239 0.549 2.8e-78
ZFIN|ZDB-GENE-990415-169 ntn1a "netrin 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 540 (195.1 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
 Identities = 102/178 (57%), Positives = 128/178 (71%)

Query:    26 DPCY-ENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYC-------DTSGACHVCDAG 77
             DPCY ENG PRRCIPDFVNAAFG+EV+ +S CG ++P RYC       +    CH CDA 
Sbjct:    38 DPCYDENGHPRRCIPDFVNAAFGKEVRASSTCG-KTPSRYCVVTEKGDERHRNCHTCDAS 96

Query:    78 SPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSF 137
              P+   P  YLTDLNNP N+TCW+S+     N L   P NVTLTLSLGKKFE+TY+SL F
Sbjct:    97 DPKKNHPPAYLTDLNNPHNLTCWQSD-----NYLQY-PQNVTLTLSLGKKFEVTYVSLQF 150

Query:   138 CPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRH 195
             C  S +P+S+AI+KS D+GKSW P Q+YS+QC+K+Y + +   I++ NEQEA+CTD H
Sbjct:   151 C--SPRPESMAIFKSMDYGKSWVPFQYYSTQCRKMYNKPSKATITKQNEQEAICTDSH 206
GO:0033564 "anterior/posterior axon guidance" evidence=IMP
GO:0048665 "neuron fate specification" evidence=IMP
GO:0016525 "negative regulation of angiogenesis" evidence=IMP
GO:0001569 "patterning of blood vessels" evidence=IMP
GO:0005576 "extracellular region" evidence=IEA
GO:0001525 "angiogenesis" evidence=IMP
GO:0016358 "dendrite development" evidence=IGI
ZFIN|ZDB-GENE-990415-168 ntn1b "netrin 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PSP7 NTN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O95631 NTN1 "Netrin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|619809 Ntn1 "netrin 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPC8 Ntn1 "Netrin-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:105088 Ntn1 "netrin 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050310-2 ntn2 "netrin 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0015773 NetA "Netrin-A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0015774 NetB "Netrin-B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q24568NETB_DROMENo assigned EC number0.58460.55090.2181yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
smart00136238 smart00136, LamNT, Laminin N-terminal domain (doma 4e-70
pfam00055237 pfam00055, Laminin_N, Laminin N-terminal (Domain V 2e-32
cd0005550 cd00055, EGF_Lam, Laminin-type epidermal growth fa 8e-07
cd0005550 cd00055, EGF_Lam, Laminin-type epidermal growth fa 9e-07
pfam0005349 pfam00053, Laminin_EGF, Laminin EGF-like (Domains 6e-05
pfam0005349 pfam00053, Laminin_EGF, Laminin EGF-like (Domains 6e-05
>gnl|CDD|214532 smart00136, LamNT, Laminin N-terminal domain (domain VI) Back     alignment and domain information 
 Score =  217 bits (554), Expect = 4e-70
 Identities = 86/173 (49%), Positives = 105/173 (60%), Gaps = 15/173 (8%)

Query: 32  GRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSG------ACHVCDAGSPRGRFPA 85
           GRPR C P FVN AFG+EV   S CG   PERYC   G       C  CDA +PR   PA
Sbjct: 2   GRPRSCYPPFVNLAFGREVTATSTCGEPGPERYCKLVGHTEQGKKCDYCDARNPRRSHPA 61

Query: 86  EYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPD 145
           E LTD NNP+N T W+SE       LS  P NV LTL LGK+F +TY+ L FC  S +P 
Sbjct: 62  ENLTDGNNPNNPTWWQSE------PLSNGPQNVNLTLDLGKEFHVTYVILKFC--SPRP- 112

Query: 146 SLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVISRGNEQEALCTDRHKKQ 198
           SL I +  DFGK+WQP Q++SS C++ +GR   G I++GNE E +CT  +   
Sbjct: 113 SLWILERSDFGKTWQPWQYFSSDCRRTFGRPPRGPITKGNEDEVICTSEYSDI 165

N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins. Length = 238
>gnl|CDD|215682 pfam00055, Laminin_N, Laminin N-terminal (Domain VI) Back     alignment and domain information
>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies Back     alignment and domain information
>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies Back     alignment and domain information
>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V) Back     alignment and domain information
>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
KOG3512|consensus 592 100.0
KOG0994|consensus 1758 100.0
smart00136238 LamNT Laminin N-terminal domain (domain VI). N-ter 100.0
KOG1836|consensus 1705 100.0
PF00055237 Laminin_N: Laminin N-terminal (Domain VI); InterPr 100.0
KOG0994|consensus 1758 99.73
KOG3512|consensus 592 99.71
KOG1836|consensus 1705 99.4
cd0005550 EGF_Lam Laminin-type epidermal growth factor-like 98.71
cd0005550 EGF_Lam Laminin-type epidermal growth factor-like 98.59
PF0005349 Laminin_EGF: Laminin EGF-like (Domains III and V); 98.5
KOG1388|consensus217 98.43
PF0005349 Laminin_EGF: Laminin EGF-like (Domains III and V); 98.4
smart0018046 EGF_Lam Laminin-type epidermal growth factor-like 98.38
smart0018046 EGF_Lam Laminin-type epidermal growth factor-like 98.18
KOG3509|consensus964 98.03
KOG3509|consensus 964 97.71
PF00754129 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000 97.27
KOG4289|consensus 2531 96.89
cd00057143 FA58C Substituted updates: Jan 31, 2002 96.84
KOG1388|consensus 217 96.59
KOG4260|consensus 350 95.79
KOG1219|consensus 4289 94.11
KOG4289|consensus 2531 93.61
PF0201212 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Membe 92.25
KOG1225|consensus 525 91.91
cd08159129 APC10-like APC10-like DOC1 domains in E3 ubiquitin 91.68
cd08666134 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H 91.25
KOG1219|consensus 4289 91.25
cd08366139 APC10 APC10 subunit of the anaphase-promoting comp 91.09
KOG1226|consensus 783 90.64
cd08365131 APC10-like1 APC10-like DOC1 domains of E3 ubiquiti 90.16
KOG3437|consensus184 89.67
cd08665131 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit 88.71
cd08667131 APC10-ZZEF1 APC10/DOC1-like domain of uncharacteri 88.48
KOG0196|consensus 996 87.49
COG5156189 DOC1 Anaphase-promoting complex (APC), subunit 10 85.33
PF0797432 EGF_2: EGF-like domain; InterPro: IPR013111 A sequ 84.08
PF03256193 APC10: Anaphase-promoting complex, subunit 10 (APC 82.18
>KOG3512|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.7e-84  Score=623.02  Aligned_cols=275  Identities=55%  Similarity=1.067  Sum_probs=260.6

Q ss_pred             CCCCCCc-cCCCcccCCCcchhhccCCceeecCccCCCCCccccCCC--CCcc-cCCCCCCCCCCCCceecccCCCCCce
Q psy6778          23 LNSDPCY-ENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTS--GACH-VCDAGSPRGRFPAEYLTDLNNPSNVT   98 (314)
Q Consensus        23 ~~~~~c~-~~g~~~~C~P~~~nla~g~~v~assTCG~~~~e~yC~~~--~~C~-~Cd~~~p~~~hp~~~~~D~~~~~~~t   98 (314)
                      ++.|||+ +.|.|++|+|.|+|+|+|++|.|++||| ++||+||.+.  ..|. .|||++|+++||+++|+|.+++.+.|
T Consensus        32 s~~dpc~~e~g~p~~C~P~~vnaa~g~~V~as~TCG-drPe~~c~~~~~~~~~~eCdAs~p~~AHpPalltD~n~~~n~T  110 (592)
T KOG3512|consen   32 SQVDPCEDETGEPRACQPEFVNAAFGKKVPASSTCG-DRPETFCSVENPYLCSNECDASNPDLAHPPALLTDLNGPGNAT  110 (592)
T ss_pred             CCCCCccCCCCCeeecChhhhhhhhCCccCCccccC-CCccceeeecCCCcccccccCCCccccCChHHhcCCCCCCCcc
Confidence            3579999 7899999999999999999999999999 6999999987  7785 99999999999999999999999999


Q ss_pred             eeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCCCCCCceEEEeecCCCCCcccceeehhhhhcccCC-CC
Q psy6778          99 CWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGR-TA  177 (314)
Q Consensus        99 wWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~g~tw~p~~yya~~C~~~f~~-~~  177 (314)
                      +|||++|.    ....|.||||||+|+|.||||||+|+|+  |+||++|+||||+|||+||+|||||+++|.+.|+| +.
T Consensus       111 cWqS~tw~----~~~~PlnVtlTLSlgKkfELT~Vsl~Fc--S~rPdsmaL~KS~D~GrTWqPfQFYss~C~~~fgr~~~  184 (592)
T KOG3512|consen  111 CWQSETWS----RYPSPLNVTLTLSLGKKFELTYVSLTFC--SGRPDSMALEKSLDYGRTWQPFQFYSSDCRKAFGRSPR  184 (592)
T ss_pred             eeeccccC----CCCCCceEEEEEecCcEEEEEEEEEEEe--cCCCceeeeeeccccCCcccccchhHHHHHHHhCCCCc
Confidence            99999874    2457899999999999999999999999  99999999999999999999999999999999999 66


Q ss_pred             cCccccCCCCCceecccCc-------------------------------------------------------------
Q psy6778         178 TGVISRGNEQEALCTDRHK-------------------------------------------------------------  196 (314)
Q Consensus       178 ~~~~~~~~~~~~~Ct~~ys-------------------------------------------------------------  196 (314)
                      ...+++.+++|++||++|+                                                             
T Consensus       185 ~a~isk~n~~Ea~Ct~s~~~~~~~~~~~~af~~l~~Rps~~dldss~vLqDwvTaTDiRvvl~Rp~s~G~~~dde~~l~r  264 (592)
T KOG3512|consen  185 RADISKSNEQEALCTESYSDGAGSGGGKIAFFELEDRPSAFDLDSSPVLQDWVTATDIRVVLLRPASLGEEYDDEANLAR  264 (592)
T ss_pred             ccccccCCccceeeccccccCCCCCCceEEeeeecCCccccccccchhhhhheeeeeeEEEEechhhcCCcchhhhhhhh
Confidence            7778889999999999886                                                             


Q ss_pred             --------ccccCCCCCCCCCCCccCCCCceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCCCCCC
Q psy6778         197 --------KQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNGHASR  268 (314)
Q Consensus       197 --------~v~g~C~CnGHa~~C~~~~~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~h~~~  268 (314)
                              .|+|||+|||||++|+.+.+++.+|+|+|||+|+.|++|||+|+++||++||...+++|.  +|+||+|+.+
T Consensus       265 YfYAisdl~VgGRCKCNgHAs~Cv~d~~~~ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~--ac~Cn~harr  342 (592)
T KOG3512|consen  265 YFYAISDLAVGGRCKCNGHASRCVMDESSHLTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPANECV--ACNCNGHARR  342 (592)
T ss_pred             hheecccceeeeeeeecCccceeeeccCCceEEecccCCCCCCcccccccccCCCccccccCCCcccc--ccccchhhhh
Confidence                    799999999999999998878899999999999999999999999999999999999999  9999999999


Q ss_pred             cccC---------CCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778         269 CIKS---------PQGALVCECRHNTAGKDCEKCKPFFSDRPWGRAT  306 (314)
Q Consensus       269 C~~~---------~~~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~~~~~  306 (314)
                      |.|+         .++|+|++|+|||+|+||+.|++|||||+..+.+
T Consensus       343 crfn~Ely~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~  389 (592)
T KOG3512|consen  343 CRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLT  389 (592)
T ss_pred             cccchhhhcccCccccceEeecccCCCCcccccccCccccCCCCCCc
Confidence            9988         5689999999999999999999999999998876

>KOG0994|consensus Back     alignment and domain information
>smart00136 LamNT Laminin N-terminal domain (domain VI) Back     alignment and domain information
>KOG1836|consensus Back     alignment and domain information
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>KOG3512|consensus Back     alignment and domain information
>KOG1836|consensus Back     alignment and domain information
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies Back     alignment and domain information
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies Back     alignment and domain information
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation Back     alignment and domain information
>KOG1388|consensus Back     alignment and domain information
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation Back     alignment and domain information
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai Back     alignment and domain information
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai Back     alignment and domain information
>KOG3509|consensus Back     alignment and domain information
>KOG3509|consensus Back     alignment and domain information
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>cd00057 FA58C Substituted updates: Jan 31, 2002 Back     alignment and domain information
>KOG1388|consensus Back     alignment and domain information
>KOG4260|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes Back     alignment and domain information
>KOG1225|consensus Back     alignment and domain information
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination Back     alignment and domain information
>KOG1226|consensus Back     alignment and domain information
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>KOG3437|consensus Back     alignment and domain information
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination Back     alignment and domain information
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs Back     alignment and domain information
>KOG0196|consensus Back     alignment and domain information
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins Back     alignment and domain information
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
4aqt_A375 Laminin Gamma1 Ln-Le1-2 Structure Length = 375 6e-50
4aqt_A375 Laminin Gamma1 Ln-Le1-2 Structure Length = 375 2e-23
3zyg_A353 Netring2 Lam And Egf1 Domains Length = 353 4e-21
3zyj_B426 Netring1 In Complex With Ngl1 Length = 426 1e-19
3tbd_A338 Crystal Structure Of Domain Vi And Le1 Of Human Net 3e-19
2y38_A403 Laminin Alpha5 Chain N-Terminal Fragment Length = 4 2e-18
2y38_A403 Laminin Alpha5 Chain N-Terminal Fragment Length = 4 5e-16
4aqs_A 525 Laminin Beta1 Ln-Le1-4 Structure Length = 525 5e-17
4aqs_A 525 Laminin Beta1 Ln-Le1-4 Structure Length = 525 4e-15
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  194 bits (493), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/309 (39%), Positives = 164/309 (53%), Gaps = 37/309 (11%)
Query: 30  ENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSG------ACHVCDAGSPRGRF 83
           E GRP+RC+P+FVNAAF   V   + CG   PE YC  +G      +CH+CDAG    + 
Sbjct: 12  EGGRPQRCMPEFVNAAFNVTVVATNTCGT-PPEEYCVQTGVTGVTKSCHLCDAGQQHLQH 70
Query: 84  PAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIK 143
            A +LTD NN ++ T W+S  QT +  +   P+++ LTL LGK F++TY+ L F   + +
Sbjct: 71  GAAFLTDYNNQADTTWWQS--QTMLAGVQY-PNSINLTLHLGKAFDITYVRLKF--HTSR 125
Query: 144 PDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI-SRGNEQEALCTDRHKKQGGRC 202
           P+S AIYK       W P Q+YS  C+  Y +   G I + G+EQ+ALCTD         
Sbjct: 126 PESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLT 185
Query: 203 KCNGHASRCIKSPQG----------ELVCEC-------RHNTAGKDCEKCKPFFSDRPWG 245
             N   S     P            E V          R NT G +       F++    
Sbjct: 186 GGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDE------VFNEPKVL 239
Query: 246 RATVYDANE-CKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGR 304
           ++  Y  ++   GGRCKCNGHAS C+K+    L+C C+HNT G DCEKC PFF+DRPW R
Sbjct: 240 KSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRR 299
Query: 305 ATVYDANEC 313
           AT   A+EC
Sbjct: 300 ATAESASEC 308
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure Length = 375 Back     alignment and structure
>pdb|3ZYG|A Chain A, Netring2 Lam And Egf1 Domains Length = 353 Back     alignment and structure
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1 Length = 426 Back     alignment and structure
>pdb|3TBD|A Chain A, Crystal Structure Of Domain Vi And Le1 Of Human Netrin-G2 Length = 338 Back     alignment and structure
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment Length = 403 Back     alignment and structure
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment Length = 403 Back     alignment and structure
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure Length = 525 Back     alignment and structure
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure Length = 525 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 1e-66
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 3e-25
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 5e-07
3tbd_A338 Netrin-G2, laminet-2; laminin N-terminal domain, d 2e-58
3tbd_A338 Netrin-G2, laminet-2; laminin N-terminal domain, d 2e-17
4aqs_A 525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 2e-51
4aqs_A525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 2e-09
4aqs_A525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 2e-07
4aqs_A525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 6e-05
3zyj_B426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 2e-49
3zyj_B426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 5e-19
2y38_A403 Laminin subunit alpha-5; structural protein, cell 1e-47
2y38_A403 Laminin subunit alpha-5; structural protein, cell 4e-21
2y38_A403 Laminin subunit alpha-5; structural protein, cell 2e-05
1klo_A162 Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: 8e-17
1klo_A162 Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: 6e-08
1klo_A 162 Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: 2e-07
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375 Back     alignment and structure
 Score =  212 bits (541), Expect = 1e-66
 Identities = 116/309 (37%), Positives = 158/309 (51%), Gaps = 26/309 (8%)

Query: 25  SDPCY-ENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTSGA------CHVCDAG 77
            D C  E GRP+RC+P+FVNAAF   V   + CG   PE YC  +G       CH+CDAG
Sbjct: 6   MDECADEGGRPQRCMPEFVNAAFNVTVVATNTCG-TPPEEYCVQTGVTGVTKSCHLCDAG 64

Query: 78  SPRGRFPAEYLTDLNNPSNVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSF 137
               +  A +LTD NN ++ T W+S+   ++ +    P+++ LTL LGK F++TY+ L F
Sbjct: 65  QQHLQHGAAFLTDYNNQADTTWWQSQ---TMLAGVQYPNSINLTLHLGKAFDITYVRLKF 121

Query: 138 CPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGRTATGVI-SRGNEQEALCTDRHK 196
              + +P+S AIYK       W P Q+YS  C+  Y +   G I + G+EQ+ALCTD   
Sbjct: 122 H--TSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFS 179

Query: 197 KQGGRCKCNGHASRCIKSPQGE------------LVCECRHNTAGKDCEKCKPFFSDRPW 244
                   N   S     P                  + R      +    + F   +  
Sbjct: 180 DISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNEPKVL 239

Query: 245 GRATVYDANECKGGRCKCNGHASRCIKSPQGALVCECRHNTAGKDCEKCKPFFSDRPWGR 304
                  ++   GGRCKCNGHAS C+K+    L+C C+HNT G DCEKC PFF+DRPW R
Sbjct: 240 KSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRR 299

Query: 305 ATVYDANEC 313
           AT   A+EC
Sbjct: 300 ATAESASEC 308
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375 Back     alignment and structure
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375 Back     alignment and structure
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Length = 338 Back     alignment and structure
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Length = 338 Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525 Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525 Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525 Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525 Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426 Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426 Back     alignment and structure
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403 Back     alignment and structure
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403 Back     alignment and structure
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403 Back     alignment and structure
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162 Back     alignment and structure
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162 Back     alignment and structure
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Length = 162 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 100.0
2y38_A403 Laminin subunit alpha-5; structural protein, cell 100.0
3zyj_B426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 100.0
4aqs_A 525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 100.0
3tbd_A338 Netrin-G2, laminet-2; laminin N-terminal domain, d 100.0
1klo_A162 Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: 99.7
1klo_A162 Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: 99.51
2y38_A403 Laminin subunit alpha-5; structural protein, cell 98.8
4aqs_A525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 98.71
3tbd_A338 Netrin-G2, laminet-2; laminin N-terminal domain, d 98.57
4a3z_A161 GH89_CBM32, alpha-N-acetylglucosaminidase family p 98.5
3zyj_B426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 98.44
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 98.4
2gy5_A 423 Angiopoietin-1 receptor; ligand-binding domain, tr 97.93
3lei_A153 Platelet aggregation factor SM-HPAF; lectin domain 97.64
4a42_A149 GH89_CBM32-4, alpha-N-acetylglucosaminidase family 97.61
2yc2_A139 IFT25, intraflagellar transport protein 25; transp 97.59
2jda_A145 Yecbm32; hypothetical protein, carbohydrate- bindi 97.58
3eyp_A469 Putative alpha-L-fucosidase; structural genomics, 97.55
1tvg_A153 LOC51668 protein; cell cycle, structural genomics, 97.53
4a4a_A 914 Alpha-N-acetylglucosaminidase family protein; hydr 97.5
2gy5_A423 Angiopoietin-1 receptor; ligand-binding domain, tr 97.49
4a41_A161 GH89_CBM32-5, alpha-N-acetylglucosaminidase family 97.47
3f2z_A159 Uncharacterized protein BF3579; the present C-term 97.4
4gwi_A153 Lectinolysin, platelet aggregation factor SM-HPAF; 97.28
2j1a_A150 Hyaluronidase, CBM32; protein-carbohydrate interac 97.25
3hnm_A172 Putative chitobiase; PSI-2, protein structure init 97.19
3ggl_A169 Putative chitobiase; X-RAY, structure genomics, NE 97.14
1k12_A158 Lectin; beta barrel, protein carbohydrate complex, 96.82
2j1v_A151 Fucolectin-related protein; carbohydrate-binding p 96.62
3cqo_A293 FBP32; F-lectin, fucolectin, sugar binding protein 96.57
2j22_A148 Fucolectin-related protein; carbohydrate-binding p 95.84
3cqo_A293 FBP32; F-lectin, fucolectin, sugar binding protein 95.83
3ues_A478 Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr 95.82
2v72_A143 CBM32, EXO-alpha-sialidase; galactose, bacterial p 95.23
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 95.14
1w8o_A601 Bacterial sialidase; 3D-structure, glycosidase, hy 94.97
2v5d_A737 O-GLCNACASE NAGJ; family 32 carbohydrate binding m 94.57
3k6s_B687 Integrin beta-2; cell receptor, adhesion molecule, 94.39
2ygq_A324 WIF-1, WNT inhibitory factor 1; signaling protein, 94.38
3bn6_A158 Lactadherin; anticoagulation, anti-coagulation, an 94.17
2w1s_A192 Hyaluronoglucosaminidase; hexosaminidase, family 3 93.58
2cho_A716 Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro 92.49
3k6s_B 687 Integrin beta-2; cell receptor, adhesion molecule, 92.06
1czt_A160 Protein (coagulation factor V); membrane-binding, 91.97
2qqi_A318 Neuropilin-1; VEGF receptor, semaphorin receptor, 91.96
2ygq_A324 WIF-1, WNT inhibitory factor 1; signaling protein, 91.62
2qqj_A325 Neuropilin-2; VEGF receptor, semaphorin receptor, 91.15
2e26_A725 Reelin, reeler protein; signaling protein; HET: NA 90.87
1jhj_A171 APC10; beta sandwich, jellyroll, cell cycle; 1.60A 90.37
2qqi_A318 Neuropilin-1; VEGF receptor, semaphorin receptor, 90.17
2vj2_A169 Jagged-1; signalling, polymorphism, glycoprotein, 90.06
4d90_A143 EGF-like repeat and discoidin I-like domain-conta 90.05
3fcs_B690 Integrin beta-3; beta propeller, rossmann fold, EG 89.85
4deq_A218 Neuropilin-1, vascular endothelial growth factor; 89.42
2wuh_A178 Discoidin domain receptor 2; receptor-peptide comp 87.91
2ddu_A 387 Reelin; beta-jelly-roll, signaling protein; 2.05A 87.69
4d90_A143 EGF-like repeat and discoidin I-like domain-conta 87.12
2qqm_A450 Neuropilin-1; VEGF receptor, semaphorin receptor, 87.12
2zxq_A1376 Endo-alpha-N-acetylgalactosaminidase; broken TIM b 86.18
2vm9_A257 Discoidin-2, discoidin II; DDR, lectin, aggregatio 85.96
2vj3_A135 Neurogenic locus notch homolog protein 1; transcri 85.26
2vj3_A135 Neurogenic locus notch homolog protein 1; transcri 85.19
3fcs_B 690 Integrin beta-3; beta propeller, rossmann fold, EG 85.04
2p28_B217 Integrin beta-2; hybrid domain, PSI domain, I-EGF 84.88
2qqj_A325 Neuropilin-2; VEGF receptor, semaphorin receptor, 84.72
3fl7_A 536 Ephrin receptor; ATP-binding, kinase, nucleotide-b 83.66
2vj2_A169 Jagged-1; signalling, polymorphism, glycoprotein, 83.39
3hny_M159 Coagulation factor VIII; blood clotting, acute pha 82.51
2qqk_A579 Neuropilin-2; VEGF receptor, semaphorin receptor, 82.42
1sdd_B647 Coagulation factor V; copper-binding protein, cofa 82.18
2qqo_A460 Neuropilin-2; VEGF receptor, semaphorin receptor, 81.93
1gqp_A221 DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, 80.03
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=4.3e-80  Score=600.59  Aligned_cols=272  Identities=46%  Similarity=0.952  Sum_probs=248.4

Q ss_pred             CCCCCCc-cCCCcccCCCcchhhccCCceeecCccCCCCCccccCCC------CCcccCCCCCCCCCCCCceecccCCCC
Q psy6778          23 LNSDPCY-ENGRPRRCIPDFVNAAFGQEVKVNSVCGLESPERYCDTS------GACHVCDAGSPRGRFPAEYLTDLNNPS   95 (314)
Q Consensus        23 ~~~~~c~-~~g~~~~C~P~~~nla~g~~v~assTCG~~~~e~yC~~~------~~C~~Cd~~~p~~~hp~~~~~D~~~~~   95 (314)
                      +++|||| +.|+||+|+|+|+|||+||+|+||||||+ +||+||+++      ++|++|||++|+++||+++|+|+++..
T Consensus         4 ~~~d~Cyd~~~~p~~C~P~~~N~a~~~~i~assTCG~-~pe~yC~~~~~~~~~~~C~~Cda~~p~~~Hp~~~~~D~~~~~   82 (375)
T 4aqt_A            4 AAMDECADEGGRPQRCMPEFVNAAFNVTVVATNTCGT-PPEEYCVQTGVTGVTKSCHLCDAGQQHLQHGAAFLTDYNNQA   82 (375)
T ss_dssp             ----CCBCTTCCBCCCCCCCEETTTTCCCEESCCTTS-SCEEEECCC----CCCCEEEECSSSTTTCCCGGGGSSCCCSS
T ss_pred             CCCCCCcCCCCCcCccCCchhhhccCCeeeEecCCCC-CCcCeEEecCCcccCCcCCccCCCChhhhCCHhheeccCCCC
Confidence            4589999 68999999999999999999999999996 899999986      689999999999999999999999999


Q ss_pred             CceeeccCCcccCCcCCCCCCceeeEeecCceeEEEEEEeeeccCCCCCCceEEEeecCCCCCcccceeehhhhhcccCC
Q psy6778          96 NVTCWRSEAQTSVNSLSASPDNVTLTLSLGKKFELTYISLSFCPKSIKPDSLAIYKSQDFGKSWQPLQFYSSQCKKLYGR  175 (314)
Q Consensus        96 ~~twWqS~~~~~~~~~~~~~~~vtitl~l~~~f~~~~v~l~f~~~s~rP~~~~iekS~D~g~tw~p~~yya~~C~~~f~~  175 (314)
                      +.|||||+++.   .+.+.+++|||||||+|+|+|+||+|+|+  ++||++|+||||+|+|+||+||||||.+|.+.|+|
T Consensus        83 ~~TwWQS~~~~---~~~~~~~~VtitLdL~~~f~~t~v~i~F~--~~rP~~m~Iers~d~G~tw~p~qyfa~~C~~~f~~  157 (375)
T 4aqt_A           83 DTTWWQSQTML---AGVQYPNSINLTLHLGKAFDITYVRLKFH--TSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSK  157 (375)
T ss_dssp             SCCCEECCCGG---GTCSSSCCEEEEEEEEEEEEEEEEEEEES--SSCCSEEEEEEESSSSSCCEEEEEEETTHHHHHSC
T ss_pred             CCceEECCCcc---ccCCCCcceEEEEcCCCeEEEEEEEEEec--CCCCCcEEEEEecCCCCCccceeeeecchhHhcCC
Confidence            99999999984   12345689999999999999999999999  99999999999999999999999999999999999


Q ss_pred             CCcCcccc-CCCCCceecccCc----------------------------------------------------------
Q psy6778         176 TATGVISR-GNEQEALCTDRHK----------------------------------------------------------  196 (314)
Q Consensus       176 ~~~~~~~~-~~~~~~~Ct~~ys----------------------------------------------------------  196 (314)
                      ++++.+.. .+++++||++.||                                                          
T Consensus       158 ~~~~~~~~~~~~~~viCt~~ys~~~p~~~g~v~~~~l~~rp~~~~~~~s~~lq~~~~at~iRi~l~~~~~~~~~~~~~~~  237 (375)
T 4aqt_A          158 ANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNEPK  237 (375)
T ss_dssp             CTTCCCCTTSCTTCCEEESTTCSCCSSSCEEEEEETTTTCTTGGGGGGCHHHHHHTEEEEEEEEEEECCCCSGGGSCCHH
T ss_pred             CCCCCcCCCCCCCeeEeCCcCCCCcCCcCCeEEEEeccCCCCcccCCcCHHHhhhhhheeeeeeecccccCccccccccc
Confidence            88877643 5688999999886                                                          


Q ss_pred             ------------ccccCCCCCCCCCCCccCCCCceeeeCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCcccCCC
Q psy6778         197 ------------KQGGRCKCNGHASRCIKSPQGELVCECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCKCNG  264 (314)
Q Consensus       197 ------------~v~g~C~CnGHa~~C~~~~~g~~~C~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~Cn~  264 (314)
                                  .|+|+|+|||||+.|..+..+.++|.|+|||+|++||+|++|||++||++++...++.|+  +|+||+
T Consensus       238 ~~~~yyYai~di~v~g~C~Cngh~s~c~~~~~~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~--~C~Cn~  315 (375)
T 4aqt_A          238 VLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECL--PCDCNG  315 (375)
T ss_dssp             HHTTCCCEEEEEEEEEEECCTTSCSCEEECTTSCEEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCC--CCCGGG
T ss_pred             ccccceeeecccccCceecCCCCCcccCCCCCCCeeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCC--CCcCcC
Confidence                        689999999999999877656678899999999999999999999999999999999999  999999


Q ss_pred             CCCCcccC-------CCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q psy6778         265 HASRCIKS-------PQGALVCECRHNTAGKDCEKCKPFFSDRPW  302 (314)
Q Consensus       265 h~~~C~~~-------~~~G~C~~C~~nt~G~~Ce~C~~Gyy~~p~  302 (314)
                      |++.|.++       ..+|+|++|++||+|++||+|++|||+++.
T Consensus       316 ~g~~C~~d~~~~~c~~~~G~C~~C~~n~~G~~Ce~C~~Gyyg~~~  360 (375)
T 4aqt_A          316 RSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGN  360 (375)
T ss_dssp             SCSCEEECHHHHHHSSCCEEECSCTTTEESTTSCEECSSEECCTT
T ss_pred             CCCCcccccccCccCCCCCCCCCCCCCCcCCCCCCCCcCcccCcC
Confidence            99998765       568999899999999999999999999874
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Back     alignment and structure
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Back     alignment and structure
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Back     alignment and structure
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Back     alignment and structure
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Back     alignment and structure
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Back     alignment and structure
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A* Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Back     alignment and structure
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Back     alignment and structure
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A* Back     alignment and structure
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens} Back     alignment and structure
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A Back     alignment and structure
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A Back     alignment and structure
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A Back     alignment and structure
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A Back     alignment and structure
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Back     alignment and structure
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A* Back     alignment and structure
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A Back     alignment and structure
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A* Back     alignment and structure
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A* Back     alignment and structure
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15 Back     alignment and structure
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A* Back     alignment and structure
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} Back     alignment and structure
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae} Back     alignment and structure
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} Back     alignment and structure
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A* Back     alignment and structure
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens} Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Back     alignment and structure
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Back     alignment and structure
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A Back     alignment and structure
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A* Back     alignment and structure
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A* Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Back     alignment and structure
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A Back     alignment and structure
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A Back     alignment and structure
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Back     alignment and structure
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens} Back     alignment and structure
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A* Back     alignment and structure
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9 Back     alignment and structure
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A Back     alignment and structure
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Back     alignment and structure
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Back     alignment and structure
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A Back     alignment and structure
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A Back     alignment and structure
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus} Back     alignment and structure
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Back     alignment and structure
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Back     alignment and structure
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} Back     alignment and structure
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A* Back     alignment and structure
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Back     alignment and structure
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Back     alignment and structure
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A Back     alignment and structure
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens} Back     alignment and structure
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Back     alignment and structure
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Back     alignment and structure
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} SCOP: b.18.1.2 PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A Back     alignment and structure
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Back     alignment and structure
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2 Back     alignment and structure
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Back     alignment and structure
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d1kloa155 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mu 9e-07
d1kloa155 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mu 2e-06
d1kloa256 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (M 0.002
d1kloa256 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (M 0.003
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 55 Back     information, alignment and structure

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 9e-07
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 202 CKCNGHASRCIKSPQGELVC-ECRHNTAGKDCEKCKPFFSDRPWG 245
           C C G +S  I     E+VC  C   TAGK CE C   +   P G
Sbjct: 1   CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLG 45
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 55 Back     information, alignment and structure
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 56 Back     information, alignment and structure
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d1kloa256 Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 99.09
d1kloa256 Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 99.01
d1kloa155 Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 99.0
d1kloa155 Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 98.87
d1kloa351 Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 98.37
d1kloa351 Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 98.26
d1jhja_161 APC10/DOC1 subunit of the anaphase-promoting compl 97.59
d1tvga_136 Placental protein 25, pp25 {Human (Homo sapiens) [ 97.55
d1w8oa2142 Sialidase, C-terminal domain {Micromonospora virid 97.48
d1gqpa_194 APC10/DOC1 subunit of the anaphase-promoting compl 97.45
d1k3ia2162 Galactose oxidase, N-terminal domain {Fungi (Fusar 97.22
d1k12a_158 Fucose binding lectin {European eel (Anguilla angu 97.21
d2qqia1156 C2 domain of factor VIII {Human (Homo sapiens) [Ta 91.59
d1jv2b543 Integrin beta EGF-like domains {Human (Homo sapien 85.3
d1edmb_39 Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 81.44
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1.1e-11  Score=87.23  Aligned_cols=49  Identities=37%  Similarity=0.819  Sum_probs=39.3

Q ss_pred             CCCCCCCC-----CCccCCCCceee-eCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCccCCccc
Q psy6778         202 CKCNGHAS-----RCIKSPQGELVC-ECRHNTAGKDCEKCKPFFSDRPWGRATVYDANECKGGRCK  261 (314)
Q Consensus       202 C~CnGHa~-----~C~~~~~g~~~C-~C~~nT~G~~Ce~C~pgy~~~p~~~~t~~~~~~C~~~~C~  261 (314)
                      |+||+|++     .|++.   +++| +|++||+|++||+|++|||++|.      ....|+  +|+
T Consensus         1 C~Cn~~~~~~~~~~Cd~~---tG~C~~C~~nt~G~~Cd~C~~G~yg~~~------~~~~C~--~C~   55 (56)
T d1kloa2           1 CQCNDNIDPNAVGNCNRL---TGECLKCIYNTAGFYCDRCKEGFFGNPL------APNPAD--KCK   55 (56)
T ss_dssp             CCSTTCBCTTCSCCBCTT---TCCBCCBCTTEETTTTCEECTTEEECTT------CSSGGG--SEE
T ss_pred             CcCCCCCCCcccCccCCC---CCCCCCCCCCCCCCCcCcccCCcccCCC------CCCCCC--CCc
Confidence            78999975     46543   4699 69999999999999999998763      345788  774
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel (Anguilla anguilla) [TaxId: 7936]} Back     information, alignment and structure
>d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure