Psyllid ID: psy6834

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MLPQIFFHNIPITDTEEIDSIFTLMTQKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSRNFHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQDGSLESSTCLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDIE
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEccccccccHHHHHHHHHHHHHHccccccHHcccccHHHHccccccccccccccEEEcccccccccccccccccccccEEEEccccccccccccHHHccccccccHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccEEcccccHHHHHHccccccccccccccccccHHHHHHHHHHHHccEEEcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEcHHHccccHHHHHEEccHHHHHccHHHHHHcccccEEEcHcccccHHHHcccEEEEEccccEcccccccEEEEEcccEEEEccccccccccccHHHHHcccHHHHHHHcHHHccccHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccccHHHHHHHHHHHHHHccEEEEEccc
Coil and Loop (DISEMBL)
mlpqiffhnipitdteeIDSIFTLMTQKSLARYCTQNAAQITEANLKSVLQrefpkaksievqdvsggcgaMFEIMVispefkglstVKQHmlvnkdsssnhspysrnfhQTTVAYSRNFHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYdlhlqdgslesstcllqwagpkslARYCTQNAAQITEANLKSVLQrefpkaksievqdvsggcgaMFEIMVispefkglstvKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVvhdhdrpktnkqydlrpsKMALKAEIKEMhglrihtdie
Flexible Loop (DISEMBL)
MLPQIFFhnipitdteeIDSIFTLMTQKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDsssnhspysrNFHQTTVAYSRNFHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQDGSLESSTCLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKavvhdhdrpktnkqydlrpskMALKAEIKemhglrihtdie
Low Complexity Region (SEG)
MLPQIFFHNIPITDTEEIDSIFTLMTQKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSRNFHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQDGSLESSTCLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDIE
Disordered region (IsUnstruct)
***QIFFHNIPITDTEEIDSIFTLMTQKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHM****************FHQTTVAYSRNFHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQDGSLESSTCLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVH*************************************
Disordered Region (DISOPRED)
************************************************VLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQ*******************FLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQ*************************************VLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRIL*************************************GLRIHT***
Disordered Region (DISEMBL)
MLPQIFFHNIPITDTEEIDSIFTLMTQKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK********YSRNFHQTTVAYSRNFHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQDGSLESSTCLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDIE
Disordered Region (DISPRO)
MLPQIFFHNIPITDTEEIDSIFTLMTQKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSRNFHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQDGSLESSTCLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPQIFFHNIPITDTEEIDSIFTLMTQKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSRNFHQTTVAYSRNFLQLCNSKELNFRNFQQTTVAYSSRICYDLHLQDGSLESSTCLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q3SZ84	110	BolA-like protein 3 OS=Bo	yes	N/A	0.271	0.772	0.345	4e-11
Q8CEI1	110	BolA-like protein 3 OS=Mu	yes	N/A	0.261	0.745	0.358	4e-11
Q53S33	107	BolA-like protein 3 OS=Ho	yes	N/A	0.233	0.682	0.355	5e-11
P39724	118	Altered inheritance of mi	yes	N/A	0.223	0.593	0.464	8e-09
O14280	84	Uncharacterized bolA-like	no	N/A	0.115	0.428	0.583	3e-06
Q9USK1	116	Uncharacterized bolA-like	no	N/A	0.230	0.620	0.268	5e-05
Q86HT3	52	BolA-like protein DDB_G02	yes	N/A	0.105	0.634	0.545	0.0002

>sp|Q3SZ84|BOLA3_BOVIN BolA-like protein 3 OS=Bos taurus GN=BOLA3 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 61/133 (45%), Gaps = 48/133 (36%)

Query: 182 LARYCTQNAAQITEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLST 239
           L  +  +  A  TEA LK   +L+ +FP+A +I+V D+SGGCGAM+EI + S EFK   T
Sbjct: 21  LLHWAQRMFASQTEAELKVTQILKEKFPRATAIKVTDISGGCGAMYEIKIESEEFKEKRT 80

Query: 240 VKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAE 299
           V+QH +VN+                                              ALK E
Sbjct: 81  VQQHQMVNQ----------------------------------------------ALKEE 94

Query: 300 IKEMHGLRIHTDI 312
           IK MHGLRI T +
Sbjct: 95  IKGMHGLRIFTSV 107

Bos taurus (taxid: 9913)

>sp|Q8CEI1|BOLA3_MOUSE BolA-like protein 3 OS=Mus musculus GN=Bola3 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 60/131 (45%), Gaps = 49/131 (37%)

Query: 185 YCTQNA-AQITEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVK 241
           +C Q   A  TE  LK   VL+ +FP+A +I+V D+SGGCGAM+EI + S EFK   TV+
Sbjct: 23  HCAQRMFASQTEGELKVTQVLKEKFPRATAIQVTDISGGCGAMYEIKIESEEFKEKRTVQ 82

Query: 242 QHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIK 301
           QH +VN+                                              ALK EIK
Sbjct: 83  QHQMVNQ----------------------------------------------ALKEEIK 96

Query: 302 EMHGLRIHTDI 312
            MHGLRI T +
Sbjct: 97  GMHGLRIFTSV 107

Mus musculus (taxid: 10090)

>sp|Q53S33|BOLA3_HUMAN BolA-like protein 3 OS=Homo sapiens GN=BOLA3 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 57/121 (47%), Gaps = 48/121 (39%)

Query: 194 TEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL 251
           TE  L+   +L+ +FP+A +I+V D+SGGCGAM+EI + S EFK   TV+QH +VN+   
Sbjct: 30  TEGELRVTQILKEKFPRATAIKVTDISGGCGAMYEIKIESEEFKEKRTVQQHQMVNQ--- 86

Query: 252 SGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTD 311
                                                      ALK EIKEMHGLRI T 
Sbjct: 87  -------------------------------------------ALKEEIKEMHGLRIFTS 103

Query: 312 I 312
           +
Sbjct: 104 V 104

Homo sapiens (taxid: 9606)

>sp|P39724|AIM1_YEAST Altered inheritance of mitochondria protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIM1 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 185 YCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHM 244
           Y TQ A    E  +   LQ+E  + +  +VQDVSGGCG+MF I + S +F GLS +KQH 
Sbjct: 29  YSTQMAMTPEEKMITDKLQQEL-EPEVCKVQDVSGGCGSMFAINITSKKFNGLSLIKQHQ 87

Query: 245 LVNKVSLSGIS 255
           LVN++    IS
Sbjct: 88  LVNRILRDDIS 98

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O14280|YETB_SCHPO Uncharacterized bolA-like protein C8C9.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC8C9.11 PE=3 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 30/36 (83%)

Query: 60 IEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVN 95
          IE+QD+SGGCG  FE++++SP F+G ST+ +H LVN
Sbjct: 20 IEIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVN 55

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9USK1|YJ2B_SCHPO Uncharacterized bolA-like protein C4B3.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.11c PE=3 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 47/119 (39%)

Query: 195 EANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGI 254
           E  +K +L  +   + S+ V DVSGGCG+M+++ + S  F+G +T+ QH LVN +     
Sbjct: 33  ERRIKDILTEKLSPS-SLRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSI----- 86

Query: 255 SYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDIE 313
                                                    LK EI+ MHGL + T++E
Sbjct: 87  -----------------------------------------LKEEIRNMHGLNLSTEVE 104

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q86HT3|Y4439_DICDI BolA-like protein DDB_G0274439 OS=Dictyostelium discoideum GN=DDB_G0274439 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 27/33 (81%)

Query: 217 VSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
           +SGGCG+M++I ++SPEFKG S + QH  VN++
Sbjct: 1   MSGGCGSMYKIEIVSPEFKGKSMINQHRKVNQI 33

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
328791881	107	PREDICTED: bolA-like protein 3-like [Api	0.271	0.794	0.386	4e-16
345492715	107	PREDICTED: bolA-like protein 3-like [Nas	0.271	0.794	0.379	2e-15
340718405	107	PREDICTED: bolA-like protein 3-like isof	0.268	0.785	0.398	2e-15
307167889	101	BolA-like protein 3 [Camponotus floridan	0.271	0.841	0.386	4e-15
383853756	107	PREDICTED: bolA-like protein 3-like [Meg	0.319	0.934	0.339	4e-14
170063883	106	conserved hypothetical protein [Culex qu	0.265	0.783	0.357	5e-14
170064836	106	conserved hypothetical protein [Culex qu	0.265	0.783	0.350	1e-13
118790123	105	AGAP004778-PA [Anopheles gambiae str. PE	0.271	0.809	0.375	1e-13
157120082	107	hypothetical protein AaeL_AAEL008899 [Ae	0.265	0.775	0.364	1e-13
322796138	109	hypothetical protein SINV_04260 [Solenop	0.293	0.844	0.355	2e-13

>gi|328791881|ref|XP_001123015.2| PREDICTED: bolA-like protein 3-like [Apis mellifera] gi|380017001|ref|XP_003692455.1| PREDICTED: bolA-like protein 3-like [Apis florea]

 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 68/137 (49%), Gaps = 52/137 (37%)

Query: 176 WAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFK 235
           W GP S        A +  E  + S+L+ +FPKAK IEV DVSGGCGAMFEI V++PEFK
Sbjct: 20  WNGPNSAL------AGKHAEQKMISILRNKFPKAKLIEVNDVSGGCGAMFEINVVAPEFK 73

Query: 236 GLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMA 295
           GL+T+KQH L+N+                                              A
Sbjct: 74  GLNTIKQHRLINE----------------------------------------------A 87

Query: 296 LKAEIKEMHGLRIHTDI 312
           LK EIK+MHG+RI+T +
Sbjct: 88  LKEEIKDMHGVRIYTSV 104

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492715|ref|XP_001599467.2| PREDICTED: bolA-like protein 3-like [Nasonia vitripennis]

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 69/137 (50%), Gaps = 52/137 (37%)

Query: 176 WAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFK 235
           W GP+++         +  E  + ++L+ +FPKA+ IEV DVSGGCGAMFEI VI+PEFK
Sbjct: 20  WNGPQNVL------TGKQAEEKMTTLLRNKFPKAELIEVCDVSGGCGAMFEINVIAPEFK 73

Query: 236 GLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMA 295
           GL+TVKQH ++N+V                                              
Sbjct: 74  GLNTVKQHRIINEV---------------------------------------------- 87

Query: 296 LKAEIKEMHGLRIHTDI 312
           LK EIK+MHG+RIHT I
Sbjct: 88  LKEEIKDMHGIRIHTAI 104

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718405|ref|XP_003397658.1| PREDICTED: bolA-like protein 3-like isoform 1 [Bombus terrestris] gi|340718407|ref|XP_003397659.1| PREDICTED: bolA-like protein 3-like isoform 2 [Bombus terrestris] gi|340718409|ref|XP_003397660.1| PREDICTED: bolA-like protein 3-like isoform 3 [Bombus terrestris] gi|350401952|ref|XP_003486317.1| PREDICTED: bolA-like protein 3-like isoform 1 [Bombus impatiens] gi|350401959|ref|XP_003486318.1| PREDICTED: bolA-like protein 3-like isoform 2 [Bombus impatiens] gi|350401964|ref|XP_003486319.1| PREDICTED: bolA-like protein 3-like isoform 3 [Bombus impatiens]

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 71/138 (51%), Gaps = 54/138 (39%)

Query: 176 WAGP-KSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEF 234
           W GP ++LA    +NA Q     + S+L+ +FP+AK IEV DVSGGCGAMFEI VI+PEF
Sbjct: 20  WNGPNRALA---GRNAEQ----KMISILRNKFPQAKLIEVNDVSGGCGAMFEINVIAPEF 72

Query: 235 KGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKM 294
           KGL+T+KQH L+N                                               
Sbjct: 73  KGLNTIKQHRLIND---------------------------------------------- 86

Query: 295 ALKAEIKEMHGLRIHTDI 312
           ALK EIK+MHG+RI+T +
Sbjct: 87  ALKEEIKDMHGVRIYTSV 104

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167889|gb|EFN61278.1| BolA-like protein 3 [Camponotus floridanus]

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/137 (38%), Positives = 67/137 (48%), Gaps = 52/137 (37%)

Query: 176 WAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFK 235
           W GP  +       A +  E  + S+L+  FP+A+ IEV DVSGGCGAMF+I VI+PEFK
Sbjct: 14  WNGPNGVL------AGKQAEQKMISILRNRFPQAQLIEVTDVSGGCGAMFDINVIAPEFK 67

Query: 236 GLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMA 295
           GL+TVKQH ++N+V                                              
Sbjct: 68  GLNTVKQHRIINEV---------------------------------------------- 81

Query: 296 LKAEIKEMHGLRIHTDI 312
           LK EIK+MHGLRIHT I
Sbjct: 82  LKEEIKDMHGLRIHTSI 98

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853756|ref|XP_003702388.1| PREDICTED: bolA-like protein 3-like [Megachile rotundata]

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 56/156 (35%)

Query: 157 CYDLHLQDGSLESSTCLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQD 216
            + L+ ++ SL S      W GP  +       A +  E  + S+L+ +FP AK IEV D
Sbjct: 5   VFMLNFRNISLLSRV----WNGPNRVL------AGKQAEQKMISILKNKFPNAKLIEVND 54

Query: 217 VSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVH 276
           VSGGCGAMFEI V++ EFKGL+T+KQH ++N+                            
Sbjct: 55  VSGGCGAMFEINVVAAEFKGLNTIKQHRMINE---------------------------- 86

Query: 277 DHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDI 312
                             ALK EIK+MHG+RI+T +
Sbjct: 87  ------------------ALKKEIKDMHGIRIYTSV 104

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170063883|ref|XP_001867297.1| conserved hypothetical protein [Culex quinquefasciatus] gi|170063885|ref|XP_001867298.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167881372|gb|EDS44755.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167881373|gb|EDS44756.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 66/137 (48%), Gaps = 54/137 (39%)

Query: 176 WAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFK 235
           W+G    A+Y        +E +L+  LQ +FP+AK++ V D+SGGCG+M+EI V + EFK
Sbjct: 21  WSGSAGAAKY--------SEESLRKTLQGKFPQAKNVVVSDISGGCGSMYEIFVETTEFK 72

Query: 236 GLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMA 295
           GLSTVKQH L+ +                                               
Sbjct: 73  GLSTVKQHRLITET---------------------------------------------- 86

Query: 296 LKAEIKEMHGLRIHTDI 312
           LK+EIK+MHGLRIHT I
Sbjct: 87  LKSEIKDMHGLRIHTAI 103

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170064836|ref|XP_001867693.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167882066|gb|EDS45449.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 54/137 (39%)

Query: 176 WAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFK 235
           W+G    A+Y        +E +L+  LQ +FP+AK++ V D+SGGCG+M+EI V + EFK
Sbjct: 21  WSGSAGAAKY--------SEESLRKTLQGKFPQAKNVVVSDISGGCGSMYEIFVETTEFK 72

Query: 236 GLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMA 295
           GL+TVKQH L+ +                                               
Sbjct: 73  GLTTVKQHRLITE----------------------------------------------T 86

Query: 296 LKAEIKEMHGLRIHTDI 312
           LK+EIK+MHGLRIHT I
Sbjct: 87  LKSEIKDMHGLRIHTAI 103

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118790123|ref|XP_318038.3| AGAP004778-PA [Anopheles gambiae str. PEST] gi|116122366|gb|EAA13135.3| AGAP004778-PA [Anopheles gambiae str. PEST]

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 67/133 (50%), Gaps = 48/133 (36%)

Query: 182 LARYCTQNAAQI--TEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLST 239
           L+R  + N+  +  +EA L+  L+ +FP+AK+I V D+SGGCG+M+EI V S EFKGLST
Sbjct: 17  LSRVWSGNSQLMKNSEATLRKTLEAKFPQAKNIVVSDISGGCGSMYEIYVESKEFKGLST 76

Query: 240 VKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAE 299
           VKQH L+ +                                               LK+E
Sbjct: 77  VKQHRLITET----------------------------------------------LKSE 90

Query: 300 IKEMHGLRIHTDI 312
           IK+MHGLRIHT I
Sbjct: 91  IKDMHGLRIHTSI 103

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120082|ref|XP_001659581.1| hypothetical protein AaeL_AAEL008899 [Aedes aegypti] gi|108875059|gb|EAT39284.1| AAEL008899-PA [Aedes aegypti]

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 66/137 (48%), Gaps = 54/137 (39%)

Query: 176 WAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFK 235
           W+G        T  AA+ +E  L+  LQ +FP+AKS+ V D+SGGCG+M+EI V + EFK
Sbjct: 21  WSG--------TNGAAKNSEDALRKTLQNKFPQAKSVMVNDISGGCGSMYEIYVEAIEFK 72

Query: 236 GLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMA 295
           GLSTVKQH L+ +                                               
Sbjct: 73  GLSTVKQHRLITET---------------------------------------------- 86

Query: 296 LKAEIKEMHGLRIHTDI 312
           LK+EIK+MHGLRIHT +
Sbjct: 87  LKSEIKDMHGLRIHTAV 103

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796138|gb|EFZ18714.1| hypothetical protein SINV_04260 [Solenopsis invicta]

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 70/149 (46%), Gaps = 57/149 (38%)

Query: 169 SSTCLLQ-----WAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGA 223
           + T LLQ     W G   +       A +  E  + S+L+  FP+A+ IEV DVSGGCGA
Sbjct: 11  NKTKLLQLLSRLWNGSNGIL------AGKHAEQKMISILRNRFPQAQLIEVTDVSGGCGA 64

Query: 224 MFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKT 283
           MF+I V++PEFKGL+T+KQH ++N+V                                  
Sbjct: 65  MFDINVVAPEFKGLNTMKQHRIINEV---------------------------------- 90

Query: 284 NKQYDLRPSKMALKAEIKEMHGLRIHTDI 312
                       LK EIK+MHGLRI T I
Sbjct: 91  ------------LKEEIKDMHGLRIRTSI 107

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
RGD|1305975	110	Bola3 "bolA homolog 3 (E. coli	0.204	0.581	0.477	1.9e-15
CGD|CAL0003310	122	orf19.6585 [Candida albicans (	0.172	0.442	0.454	2.6e-12
UNIPROTKB|Q5AGV3	122	CaO19.13938 "Putative uncharac	0.172	0.442	0.454	2.6e-12
MGI|MGI:1925903	110	Bola3 "bolA-like 3 (E. coli)"	0.204	0.581	0.507	1.1e-11
UNIPROTKB|Q3SZ84	110	BOLA3 "BolA-like protein 3" [B	0.214	0.609	0.478	2.4e-11
ZFIN|ZDB-GENE-040801-32	104	zgc:100870 "zgc:100870" [Danio	0.172	0.519	0.537	3.9e-11
POMBASE|SPCC4B3.11c	116	SPCC4B3.11c "mitochondrial tra	0.172	0.465	0.4	9.1e-11
UNIPROTKB|Q53S33	107	BOLA3 "BolA-like protein 3" [H	0.223	0.654	0.452	1.8e-10
SGD|S000000044	118	AIM1 "Protein involved in mito	0.223	0.593	0.464	4e-10
TAIR|locus:2178143	93	AT5G09830 [Arabidopsis thalian	0.172	0.580	0.363	1.1e-07

RGD|1305975 Bola3 "bolA homolog 3 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 32/67 (47%), Positives = 44/67 (65%)

Query:    33 YCTQNA-AQITEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVK 89
             +C     A  TE  LK   VL+ +FP+A +I+V D+SGGCGAM+EI + S EFK    V+
Sbjct:    23 HCAHRMFASQTEGELKVTQVLKEKFPRATAIQVTDISGGCGAMYEIKIESEEFKAKRMVQ 82

Query:    90 QHMLVNK 96
             QH +VN+
Sbjct:    83 QHQMVNQ 89

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0003310 orf19.6585 [Candida albicans (taxid:5476)]

 Score = 141 (54.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 25/55 (45%), Positives = 42/55 (76%)

Query:   195 EANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
             E+ + ++LQ+E     +++++DVSGGCG+MF I + S +FKGL+ +KQH LVN++
Sbjct:    51 ESKIYNILQQELNPV-NLKIKDVSGGCGSMFSIFIESEKFKGLTMIKQHRLVNEI 104

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AGV3 CaO19.13938 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 141 (54.7 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 25/55 (45%), Positives = 42/55 (76%)

Query:   195 EANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
             E+ + ++LQ+E     +++++DVSGGCG+MF I + S +FKGL+ +KQH LVN++
Sbjct:    51 ESKIYNILQQELNPV-NLKIKDVSGGCGSMFSIFIESEKFKGLTMIKQHRLVNEI 104

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1925903 Bola3 "bolA-like 3 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 163 (62.4 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 34/67 (50%), Positives = 46/67 (68%)

Query:    33 YCTQNA-AQITEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVK 89
             +C Q   A  TE  LK   VL+ +FP+A +I+V D+SGGCGAM+EI + S EFK   TV+
Sbjct:    23 HCAQRMFASQTEGELKVTQVLKEKFPRATAIQVTDISGGCGAMYEIKIESEEFKEKRTVQ 82

Query:    90 QHMLVNK 96
             QH +VN+
Sbjct:    83 QHQMVNQ 89

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3SZ84 BOLA3 "BolA-like protein 3" [Bos taurus (taxid:9913)]

 Score = 160 (61.4 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 33/69 (47%), Positives = 47/69 (68%)

Query:    30 LARYCTQNAAQITEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLST 87
             L  +  +  A  TEA LK   +L+ +FP+A +I+V D+SGGCGAM+EI + S EFK   T
Sbjct:    21 LLHWAQRMFASQTEAELKVTQILKEKFPRATAIKVTDISGGCGAMYEIKIESEEFKEKRT 80

Query:    88 VKQHMLVNK 96
             V+QH +VN+
Sbjct:    81 VQQHQMVNQ 89

GO:0005576 "extracellular region" evidence=IEA

ZFIN|ZDB-GENE-040801-32 zgc:100870 "zgc:100870" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 29/54 (53%), Positives = 41/54 (75%)

Query:    43 EANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
             E  +  VL+ +FP+A +++V D+SGGCGAM+EI + S EFKG  TV+QH LVN+
Sbjct:    30 EVRIAQVLKEKFPQATALKVVDISGGCGAMYEIHIESDEFKGKRTVQQHQLVNQ 83

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPCC4B3.11c SPCC4B3.11c "mitochondrial transcriptional repressor protein BolA domain (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 117 (46.2 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
 Identities = 22/55 (40%), Positives = 36/55 (65%)

Query:   195 EANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
             E  +K +L  +   + S+ V DVSGGCG+M+++ + S  F+G +T+ QH LVN +
Sbjct:    33 ERRIKDILTEKLSPS-SLRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSI 86

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q53S33 BOLA3 "BolA-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 33/73 (45%), Positives = 48/73 (65%)

Query:   178 GPKSLARYCTQNAAQITEANLK--SVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFK 235
             G + L  +    A Q TE  L+   +L+ +FP+A +I+V D+SGGCGAM+EI + S EFK
Sbjct:    15 GIRGLPLHHRMFATQ-TEGELRVTQILKEKFPRATAIKVTDISGGCGAMYEIKIESEEFK 73

Query:   236 GLSTVKQHMLVNK 248
                TV+QH +VN+
Sbjct:    74 EKRTVQQHQMVNQ 86

GO:0005576 "extracellular region" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000000044 AIM1 "Protein involved in mitochondrial function or organization" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 149 (57.5 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 33/71 (46%), Positives = 44/71 (61%)

Query:   185 YCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHM 244
             Y TQ A    E  +   LQ+E  + +  +VQDVSGGCG+MF I + S +F GLS +KQH 
Sbjct:    29 YSTQMAMTPEEKMITDKLQQEL-EPEVCKVQDVSGGCGSMFAINITSKKFNGLSLIKQHQ 87

Query:   245 LVNKVSLSGIS 255
             LVN++    IS
Sbjct:    88 LVNRILRDDIS 98

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178143 AT5G09830 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 20/55 (36%), Positives = 37/55 (67%)

Query:    41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVN 95
             +T+  +++ L  +  K   +EV D+SGGCG+ FE+ V+S +F+G   +++H +VN
Sbjct:     2 VTKEQVEASLTSKL-KPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLERHRMVN 55

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006301 "postreplication repair" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86HT3	Y4439_DICDI	No assigned EC number	0.5454	0.1054	0.6346	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	313
pfam01722	72	pfam01722, BolA, BolA-like protein	1e-08
pfam01722	72	pfam01722, BolA, BolA-like protein	2e-08
COG0271	90	COG0271, BolA, Stress-induced morphogen (activity	3e-07
COG0271	90	COG0271, BolA, Stress-induced morphogen (activity	3e-07

>gnl|CDD|216662 pfam01722, BolA, BolA-like protein

 Score = 50.6 bits (122), Expect = 1e-08
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 202 LQREFPKAKSIEVQDVSG-GCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
           L+   P    +EV+D S  G G+ F+++V+S  F+G S VK+H LV   
Sbjct: 3   LEAALP-PAHLEVEDESHKGDGSHFKVVVVSDAFEGKSLVKRHRLVYAA 50

This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5. Length = 72

>gnl|CDD|216662 pfam01722, BolA, BolA-like protein

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 50 LQREFPKAKSIEVQDVSG-GCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
          L+   P    +EV+D S  G G+ F+++V+S  F+G S VK+H LV  
Sbjct: 3  LEAALP-PAHLEVEDESHKGDGSHFKVVVVSDAFEGKSLVKRHRLVYA 49

This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5. Length = 72

>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 193 ITEANLKSVLQREFPKAKSIEVQDVS-------GGCGAMFEIMVISPEFKGLSTVKQHML 245
           I    ++  L+  FP +  +E+ D S       GG G+ F+++++S  F+G S V +H L
Sbjct: 3   IQRERIEKKLRAAFPPSF-LEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRL 61

Query: 246 VNKV 249
           V   
Sbjct: 62  VYSA 65

Length = 90

>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 41 ITEANLKSVLQREFPKAKSIEVQDVS-------GGCGAMFEIMVISPEFKGLSTVKQHML 93
          I    ++  L+  FP +  +E+ D S       GG G+ F+++++S  F+G S V +H L
Sbjct: 3  IQRERIEKKLRAAFPPSF-LEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRL 61

Query: 94 VNK 96
          V  
Sbjct: 62 VYS 64

Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
KOG3348|consensus	85		99.93
PRK11628	105	transcriptional regulator BolA; Provisional	99.89
KOG3348|consensus	85		99.88
COG0271	90	BolA Stress-induced morphogen (activity unknown) [	99.87
PF01722	76	BolA: BolA-like protein; InterPro: IPR002634 This	99.86
COG5007	80	Predicted transcriptional regulator, BolA superfam	99.86
COG0271	90	BolA Stress-induced morphogen (activity unknown) [	99.84
PRK11628	105	transcriptional regulator BolA; Provisional	99.83
PF01722	76	BolA: BolA-like protein; InterPro: IPR002634 This	99.79
KOG2313|consensus	100		99.78
COG5007	80	Predicted transcriptional regulator, BolA superfam	99.72
KOG2313|consensus	100		99.66

>KOG3348|consensus

Probab=99.93  E-value=9.7e-26  Score=179.39  Aligned_cols=75  Identities=44%  Similarity=0.771  Sum_probs=72.0

Q ss_pred             ccccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhhhhhhhhchhhhhhhhhhhh
Q psy6834         191 AQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSA  270 (313)
Q Consensus       191 m~~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~haisikT~~eW~~~~~~~~  270 (313)
                      |++.++.|+++|+++| .|++|+|+|+|||||++|+|.|||+.|+||++|+|||+||+                      
T Consensus         1 m~~~e~~l~~~L~~~l-~p~~v~V~D~SgGCG~~F~v~IvS~~FeGKs~L~rHRlVN~----------------------   57 (85)
T KOG3348|consen    1 MTVTEERLEELLTEAL-EPEHVEVQDVSGGCGSMFDVVIVSAAFEGKSLLARHRLVNS----------------------   57 (85)
T ss_pred             CcchHHHHHHHHHhhc-CceEEEEEEcCCCccceEEEEEEccccCChHHHHHHHHHHH----------------------
Confidence            5678999999999999 69999999999999999999999999999999999999999                      


Q ss_pred             hhhhcccCCCCccccccCCccchHHHHHHHhhhhceeeeecc
Q psy6834         271 LKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDI  312 (313)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  312 (313)
                                              +|++||++||||+++|..
T Consensus        58 ------------------------~L~Eeik~iHalt~kt~t   75 (85)
T KOG3348|consen   58 ------------------------ILAEEIKEIHALTIKTYT   75 (85)
T ss_pred             ------------------------HHHHHHHHHhhheeeecC
Confidence                                    999999999999999975

>PRK11628 transcriptional regulator BolA; Provisional

Probab=99.89  E-value=1.9e-23  Score=172.68  Aligned_cols=77  Identities=18%  Similarity=0.316  Sum_probs=72.3

Q ss_pred             chHHHHHHHHhhhCCCCceEEEEecc------CCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecc
Q psy6834          41 ITEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTV  114 (313)
Q Consensus        41 ~~~eeI~~kLq~~lp~~~~VeV~D~S------gG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~  114 (313)
                      +..++|+++|+.+|+ +.+|+|+|+|      +|+|+||+|+|||+.|+||++|+|||+||++|+++|.++||||+|+|+
T Consensus         2 m~~~~I~~~L~~~l~-~~~l~V~d~S~~H~~~~g~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~IHALsi~t~   80 (105)
T PRK11628          2 MIREQIEEKLRAAFQ-PVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTY   80 (105)
T ss_pred             CcHHHHHHHHHhhCC-CcEEEEEECcccccCCCCCCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCCccceeeecC
Confidence            478999999999998 4579999999      478999999999999999999999999999999999988999999999


Q ss_pred             cccc
Q psy6834         115 AYSR  118 (313)
Q Consensus       115 t~s~  118 (313)
                      ||+|
T Consensus        81 tp~E   84 (105)
T PRK11628         81 TIKE   84 (105)
T ss_pred             CHHH
Confidence            9987

>KOG3348|consensus

Probab=99.88  E-value=5.8e-23  Score=163.54  Aligned_cols=78  Identities=32%  Similarity=0.563  Sum_probs=74.7

Q ss_pred             CcchHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834          39 AQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR  118 (313)
Q Consensus        39 ~~~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~  118 (313)
                      |++.++.|+++|++++ .|++|+|+|.|||||+.|.|+|||+.|+||++|+|||+||++|+++|++ |||++++|.|+.+
T Consensus         1 m~~~e~~l~~~L~~~l-~p~~v~V~D~SgGCG~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik~-iHalt~kt~t~~~   78 (85)
T KOG3348|consen    1 MTVTEERLEELLTEAL-EPEHVEVQDVSGGCGSMFDVVIVSAAFEGKSLLARHRLVNSILAEEIKE-IHALTIKTYTPEE   78 (85)
T ss_pred             CcchHHHHHHHHHhhc-CceEEEEEEcCCCccceEEEEEEccccCChHHHHHHHHHHHHHHHHHHH-HhhheeeecChhh
Confidence            5678999999999999 5899999999999999999999999999999999999999999999997 9999999999887

>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

Probab=99.87  E-value=1.9e-22  Score=162.98  Aligned_cols=76  Identities=25%  Similarity=0.366  Sum_probs=71.0

Q ss_pred             hHHHHHHHHhhhCCCCceEEEEeccC-------CCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecc
Q psy6834          42 TEANLKSVLQREFPKAKSIEVQDVSG-------GCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTV  114 (313)
Q Consensus        42 ~~eeI~~kLq~~lp~~~~VeV~D~Sg-------G~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~  114 (313)
                      ..++|+++|+++|+ |..++|.|+|+       |||+||+|+|||+.|+|+|+|+|||+||++|+|+|.++||||++.|+
T Consensus         4 ~~~~Ie~~l~~~f~-p~~l~i~deS~~h~~~~~g~~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~~iHALal~t~   82 (90)
T COG0271           4 QRERIEKKLRAAFP-PSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSGGIHALALHTY   82 (90)
T ss_pred             cHHHHHHHHHhcCC-CceEEEEecccccccCCCCCCCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhccceeeEeEee
Confidence            34789999999998 56799999995       69999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q psy6834         115 AYSR  118 (313)
Q Consensus       115 t~s~  118 (313)
                      |+.|
T Consensus        83 t~~e   86 (90)
T COG0271          83 TPEE   86 (90)
T ss_pred             ccch
Confidence            8875

>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs

Probab=99.86  E-value=4.4e-22  Score=155.67  Aligned_cols=68  Identities=32%  Similarity=0.498  Sum_probs=60.8

Q ss_pred             HHhhhCCCCceEEEEecc-------CCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834          49 VLQREFPKAKSIEVQDVS-------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR  118 (313)
Q Consensus        49 kLq~~lp~~~~VeV~D~S-------gG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~  118 (313)
                      ||++.|| +.+|+|+|+|       +| |+||+|+|||+.|+|||+|+|||+||++|+++|.++||||+|+|.||+|
T Consensus         1 Kl~~~l~-~~~l~V~d~S~~H~~h~~g-~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~~iHAlsi~t~tp~E   75 (76)
T PF01722_consen    1 KLKAALP-PTHLEVEDESHKHAGHAGG-GSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKDGIHALSIKTYTPEE   75 (76)
T ss_dssp             HHHHHHT-TSEEEEEE-SSSSSS-CCS-SSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGCTCSEEEEEEE-HHH
T ss_pred             ChhHhCC-CcEEEEEECcccccCCCCC-CceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCCccc
Confidence            6788897 6679999999       45 9999999999999999999999999999999999899999999999988

In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.

>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]

Probab=99.86  E-value=5.6e-22  Score=156.29  Aligned_cols=73  Identities=26%  Similarity=0.418  Sum_probs=69.3

Q ss_pred             chHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCc-ccceeeeecccccc
Q psy6834          41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSP-YSRNFHQTTVAYSR  118 (313)
Q Consensus        41 ~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~-~IHAL~i~T~t~s~  118 (313)
                      ++.++|++.|+++|| +++++|+    |+|+||.+++||+.|+|||+|+|||+||+.|.++|.+ .||||+|+|+||+|
T Consensus         1 M~~e~Ik~ll~~~L~-~e~v~V~----Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IHAlsikt~Tp~e   74 (80)
T COG5007           1 MDNEEIKSLLENALP-LEEVEVE----GDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALSIKTYTPAE   74 (80)
T ss_pred             CCHHHHHHHHHhcCC-ccEEEEe----cCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceEEEEeeecCHHH
Confidence            467999999999998 6679998    8999999999999999999999999999999999995 99999999999998

>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

Probab=99.84  E-value=4.8e-21  Score=154.77  Aligned_cols=74  Identities=35%  Similarity=0.593  Sum_probs=67.9

Q ss_pred             cccHHHHHHHHhhhCCCCceEEEEeCCC-------CCCceeEEEEECcCCCCCChHHHHHHHHHHhhhhhhhhchhhhhh
Q psy6834         192 QITEANLKSVLQREFPKAKSIEVQDVSG-------GCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKS  264 (313)
Q Consensus       192 ~~~e~~I~~kL~~~Lp~a~~v~V~D~Sg-------GcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~haisikT~~eW~~  264 (313)
                      .+..++|+++|+++|+ |..++|.|+|+       |||+||+|.|||+.|+|||+|+|||+||.                
T Consensus         2 ~i~~~~Ie~~l~~~f~-p~~l~i~deS~~h~~~~~g~~~Hf~i~IVS~~F~G~s~v~rHr~V~~----------------   64 (90)
T COG0271           2 SIQRERIEKKLRAAFP-PSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYS----------------   64 (90)
T ss_pred             CccHHHHHHHHHhcCC-CceEEEEecccccccCCCCCCCeEEEEEEchhhCCccHHHHHHHHHH----------------
Confidence            3445789999999996 77899999995       79999999999999999999999999999                


Q ss_pred             hhhhhhhhhhcccCCCCccccccCCccchHHHHHHHhh-hhceeeeecc
Q psy6834         265 RILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKE-MHGLRIHTDI  312 (313)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~  312 (313)
                                                    +|++||.. +|||.|+|..
T Consensus        65 ------------------------------~L~del~~~iHALal~t~t   83 (90)
T COG0271          65 ------------------------------ALKDELSGGIHALALHTYT   83 (90)
T ss_pred             ------------------------------HHHHHHhccceeeEeEeec
Confidence                                          99999987 9999999974

>PRK11628 transcriptional regulator BolA; Provisional

Probab=99.83  E-value=1.1e-20  Score=156.25  Aligned_cols=72  Identities=18%  Similarity=0.423  Sum_probs=63.1

Q ss_pred             cccHHHHHHHHhhhCCCCceEEEEeCC------CCCCceeEEEEECcCCCCCChHHHHHHHHHHhh-------hhhhhhc
Q psy6834         192 QITEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL-------SGISYKC  258 (313)
Q Consensus       192 ~~~e~~I~~kL~~~Lp~a~~v~V~D~S------gGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~-------haisikT  258 (313)
                      +|..++|+++|+++|+ +.+|+|+|+|      +|||+||+|.|||+.|+||++|+||||||++|.       |+++|+|
T Consensus         1 mm~~~~I~~~L~~~l~-~~~l~V~d~S~~H~~~~g~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~IHALsi~t   79 (105)
T PRK11628          1 MMIREQIEEKLRAAFQ-PVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHT   79 (105)
T ss_pred             CCcHHHHHHHHHhhCC-CcEEEEEECcccccCCCCCCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCCccceeeec
Confidence            3577999999999996 6789999999      578999999999999999999999999999874       6667777


Q ss_pred             h--hhhhh
Q psy6834         259 N--RHWKS  264 (313)
Q Consensus       259 ~--~eW~~  264 (313)
                      +  +||++
T Consensus        80 ~tp~Ew~~   87 (105)
T PRK11628         80 YTIKEWEG   87 (105)
T ss_pred             CCHHHHHH
Confidence            6  58875

>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs

Probab=99.79  E-value=2.1e-19  Score=140.62  Aligned_cols=64  Identities=48%  Similarity=0.783  Sum_probs=56.7

Q ss_pred             HHhhhCCCCceEEEEeCC-------CCCCceeEEEEECcCCCCCChHHHHHHHHHHhhhhhhhhchhhhhhhhhhhhhhh
Q psy6834         201 VLQREFPKAKSIEVQDVS-------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSALKA  273 (313)
Q Consensus       201 kL~~~Lp~a~~v~V~D~S-------gGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~haisikT~~eW~~~~~~~~~~~  273 (313)
                      ||+++|+ +.+|+|.|+|       +| |+||+|.|||+.|+|||+|+||||||+                         
T Consensus         1 Kl~~~l~-~~~l~V~d~S~~H~~h~~g-~sHf~i~IvS~~F~g~s~i~rhr~V~~-------------------------   53 (76)
T PF01722_consen    1 KLKAALP-PTHLEVEDESHKHAGHAGG-GSHFKIIIVSDEFEGKSRIKRHRLVYK-------------------------   53 (76)
T ss_dssp             HHHHHHT-TSEEEEEE-SSSSSS-CCS-SSEEEEEEECGGGTTS-HHHHHHHHHH-------------------------
T ss_pred             ChhHhCC-CcEEEEEECcccccCCCCC-CceEEEEEEcHHhCCCCHHHHHHHHHH-------------------------
Confidence            6889995 7789999999       55 999999999999999999999999999                         


Q ss_pred             hcccCCCCccccccCCccchHHHHHHHhh-hhceeeeecc
Q psy6834         274 VVHDHDRPKTNKQYDLRPSKMALKAEIKE-MHGLRIHTDI  312 (313)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~  312 (313)
                                           +|++||+. +|+|+|+|.+
T Consensus        54 ---------------------~L~~~i~~~iHAlsi~t~t   72 (76)
T PF01722_consen   54 ---------------------ALKDEIKDGIHALSIKTYT   72 (76)
T ss_dssp             ---------------------HTHHHHGCTCSEEEEEEE-
T ss_pred             ---------------------HHHHHhcCCceEEEEEcCC
Confidence                                 99999987 9999999864

In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.

>KOG2313|consensus

Probab=99.78  E-value=4.5e-19  Score=144.94  Aligned_cols=81  Identities=23%  Similarity=0.277  Sum_probs=75.0

Q ss_pred             ccCcchHHHHHHHHhhhCCCCceEEEEeccC---------C---CcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCc
Q psy6834          37 NAAQITEANLKSVLQREFPKAKSIEVQDVSG---------G---CGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSP  104 (313)
Q Consensus        37 s~~~~~~eeI~~kLq~~lp~~~~VeV~D~Sg---------G---~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~  104 (313)
                      ...++.+..|+++|..+|. +.++++.|+|+         |   +++||+|.|||++|+|+++|+||||||++|+||+++
T Consensus         6 ~~~g~~~~ri~~~l~~~lk-p~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl~~   84 (100)
T KOG2313|consen    6 GIYGPRESRIREKLFEALK-PLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELAG   84 (100)
T ss_pred             cccCcHHHHHHHHhHhhcC-cceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHHHhhc
Confidence            4567899999999999996 66899999994         2   789999999999999999999999999999999999


Q ss_pred             -ccceeeeecccccc
Q psy6834         105 -YSRNFHQTTVAYSR  118 (313)
Q Consensus       105 -~IHAL~i~T~t~s~  118 (313)
                       ++|||+|.+.||+|
T Consensus        85 ~gvHAL~i~aKTP~e   99 (100)
T KOG2313|consen   85 TGVHALSIMAKTPSE   99 (100)
T ss_pred             cceeEEEeeccCCCC
Confidence             79999999999998

>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]

Probab=99.72  E-value=6.8e-18  Score=133.26  Aligned_cols=68  Identities=31%  Similarity=0.586  Sum_probs=61.9

Q ss_pred             ccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhh--------hhhhhhch--hhh
Q psy6834         193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL--------SGISYKCN--RHW  262 (313)
Q Consensus       193 ~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~--------haisikT~--~eW  262 (313)
                      |+.++|++.|++.|| .++++|+    |+|+||.+++||+.|+|||+|+|||+||+.|.        |++||||+  +||
T Consensus         1 M~~e~Ik~ll~~~L~-~e~v~V~----Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IHAlsikt~Tp~eW   75 (80)
T COG5007           1 MDNEEIKSLLENALP-LEEVEVE----GDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALSIKTYTPAEW   75 (80)
T ss_pred             CCHHHHHHHHHhcCC-ccEEEEe----cCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceEEEEeeecCHHHh
Confidence            567999999999997 5679996    79999999999999999999999999999984        78899998  699


Q ss_pred             hhh
Q psy6834         263 KSR  265 (313)
Q Consensus       263 ~~~  265 (313)
                      +++
T Consensus        76 ~~~   78 (80)
T COG5007          76 ARD   78 (80)
T ss_pred             hhc
Confidence            983

>KOG2313|consensus

Probab=99.66  E-value=2.1e-16  Score=129.32  Aligned_cols=58  Identities=31%  Similarity=0.441  Sum_probs=52.3

Q ss_pred             cccccHHHHHHHHhhhCCCCceEEEEeCCC---------C---CCceeEEEEECcCCCCCChHHHHHHHHH
Q psy6834         190 AAQITEANLKSVLQREFPKAKSIEVQDVSG---------G---CGAMFEIMVISPEFKGLSTVKQHMLVNK  248 (313)
Q Consensus       190 ~m~~~e~~I~~kL~~~Lp~a~~v~V~D~Sg---------G---cGsHF~I~IVS~~F~Gks~VkRHRlVy~  248 (313)
                      ...+.+..|+++|..+|. +..++++|+|+         |   .++||+|.|||++|+|+++|+||||||.
T Consensus         7 ~~g~~~~ri~~~l~~~lk-p~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~   76 (100)
T KOG2313|consen    7 IYGPRESRIREKLFEALK-PLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYK   76 (100)
T ss_pred             ccCcHHHHHHHHhHhhcC-cceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHH
Confidence            344578999999999995 78899999994         2   7899999999999999999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
3o2e_A	105	Crystal Structure Of A Bol-Like Protein From Babesi		3e-04

>pdb|3O2E|A Chain A, Crystal Structure Of A Bol-Like Protein From Babesia Bovis Length = 105

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 16/83 (19%)
Query: 165 GSLESSTCLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAM 224
           G+LE+ T      GP S+       +  I E  L+S+L  +F     ++V D SGGCGA 
Sbjct: 10  GTLEAQT-----QGPGSMV------SKSIVEERLRSMLSPQF-----LKVTDNSGGCGAA 53
Query: 225 FEIMVISPEFKGLSTVKQHMLVN 247
           F   ++S +F+G   + +  LVN
Sbjct: 54  FNAYIVSQQFEGKGLLDRQRLVN 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	9e-16
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	8e-15
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	3e-14
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	2e-13
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	7e-12
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	2e-11
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	2e-10
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	2e-10
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	8e-08
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	9e-08
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	2e-07
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	2e-07
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	3e-07
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	3e-07
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	1e-05
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	2e-05
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	2e-05
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Length = 105

 Score = 70.9 bits (174), Expect = 9e-16
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 47/130 (36%)

Query: 181 SLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTV 240
           +L        + ++++ ++  L+      + ++V D SGGCGA F   ++S +F+G   +
Sbjct: 11  TLEAQTQGPGSMVSKSIVEERLRSMLS-PQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLL 69

Query: 241 KQHMLVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEI 300
            +  LVN                                               A+ AE+
Sbjct: 70  DRQRLVNS----------------------------------------------AIAAEM 83

Query: 301 KEMHGLRIHT 310
            ++H   +  
Sbjct: 84  PQIHAFTMKC 93

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Length = 105

 Score = 68.3 bits (167), Expect = 8e-15
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 29 SLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTV 88
          +L        + ++++ ++  L+      + ++V D SGGCGA F   ++S +F+G   +
Sbjct: 11 TLEAQTQGPGSMVSKSIVEERLRSMLS-PQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLL 69

Query: 89 KQHMLVNK 96
           +  LVN 
Sbjct: 70 DRQRLVNS 77

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Length = 108

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 47/117 (40%)

Query: 194 TEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSG 253
            +  ++  L         +E+ D S GCG  F+ +++S  F+    + +H LVN      
Sbjct: 25  IQKVIEDKLSSALK-PTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNT----- 78

Query: 254 ISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHT 310
                                                     LK E++ +H   +  
Sbjct: 79  -----------------------------------------ILKEELQNIHAFSMKC 94

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Length = 108

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 42 TEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
           +  ++  L         +E+ D S GCG  F+ +++S  F+    + +H LVN 
Sbjct: 25 IQKVIEDKLSSALK-PTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNT 78

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Length = 113

 Score = 60.2 bits (146), Expect = 7e-12
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 48/125 (38%)

Query: 187 TQNAAQITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHML 245
                +++   L+  L+++   A+ +EV+D +   C   F ++V+S +F+G   +++H L
Sbjct: 24  GAATMELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRL 82

Query: 246 VNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHG 305
           VN+                                               L  E+  +H 
Sbjct: 83  VNE----------------------------------------------CLAEELPHIHA 96

Query: 306 LRIHT 310
               T
Sbjct: 97  FEQKT 101

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Length = 113

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 35 TQNAAQITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHML 93
               +++   L+  L+++   A+ +EV+D +   C   F ++V+S +F+G   +++H L
Sbjct: 24 GAATMELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRL 82

Query: 94 VNK 96
          VN+
Sbjct: 83 VNE 85

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis} Length = 76

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
          +T++ L+ +++  FP+A+ I V  + G     + I VIS +F+G S ++QH ++ K
Sbjct: 6  VTQSQLELLIRNAFPEAE-ITVTSLVGD-NNHYSIKVISSQFQGKSKLEQHRMIYK 59

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis} Length = 76

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 248
           +T++ L+ +++  FP+A+ I V  + G     + I VIS +F+G S ++QH ++ K
Sbjct: 6   VTQSQLELLIRNAFPEAE-ITVTSLVGD-NNHYSIKVISSQFQGKSKLEQHRMIYK 59

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii} Length = 82

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
           +T  ++K  ++    +++ +   +   G G  FE +V+ P F+G + + +H LV   
Sbjct: 5   VTTHDIKQWIETGLSESR-VISAE---GDGHHFEAVVLCPTFEGQTALTRHRLVYNA 57

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii} Length = 82

 Score = 48.1 bits (115), Expect = 9e-08
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
          +T  ++K  ++    +++ +   +   G G  FE +V+ P F+G + + +H LV  
Sbjct: 5  VTTHDIKQWIETGLSESR-VISAE---GDGHHFEAVVLCPTFEGQTALTRHRLVYN 56

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Length = 80

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
           +    ++ +++   P+A+ ++VQ      G  FE  V+SP F G + + +H +V   
Sbjct: 6   LDAETIRKLIESGLPEAR-VDVQG---EDGVHFEATVVSPAFVGKAPLARHRMVYAT 58

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Length = 80

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
          +    ++ +++   P+A+ ++VQ      G  FE  V+SP F G + + +H +V  
Sbjct: 6  LDAETIRKLIESGLPEAR-VDVQG---EDGVHFEATVVSPAFVGKAPLARHRMVYA 57

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Length = 97

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
           +    ++SVL       + + V     G G+ F+++ +   F G+S VK+   V   
Sbjct: 6   MENNEIQSVLMNALSLQE-VHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGP 57

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Length = 97

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
          +    ++SVL       + + V     G G+ F+++ +   F G+S VK+   V  
Sbjct: 6  MENNEIQSVLMNALSLQE-VHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYG 56

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str} Length = 107

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 194 TEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVN 247
               ++  L+  F +   +EV D S       G  + F+++++S  F G   + +H ++ 
Sbjct: 10  IRERIEEKLRAAF-QPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIY 68

Query: 248 KV 249
             
Sbjct: 69  ST 70

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str} Length = 107

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 42 TEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVN 95
              ++  L+  F +   +EV D S       G  + F+++++S  F G   + +H ++ 
Sbjct: 10 IRERIEEKLRAAF-QPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIY 68

Query: 96 K 96
           
Sbjct: 69 S 69

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 123

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 187 TQNAAQITEANLKSVLQREFPKAKSIEVQDVSG------GCGAMFEIMVISPEFKGLSTV 240
              AA   EA +++ L++     + +E+++ SG      G    F + V+S  F+G+S +
Sbjct: 20  GSAAAGPVEAAIRAKLEQAL-SPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPL 78

Query: 241 KQHMLVNKV 249
           ++H LV++ 
Sbjct: 79  QRHRLVHEA 87

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 123

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 7/68 (10%)

Query: 35 TQNAAQITEANLKSVLQREFPKAKSIEVQDVSG------GCGAMFEIMVISPEFKGLSTV 88
             AA   EA +++ L++     + +E+++ SG      G    F + V+S  F+G+S +
Sbjct: 20 GSAAAGPVEAAIRAKLEQAL-SPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPL 78

Query: 89 KQHMLVNK 96
          ++H LV++
Sbjct: 79 QRHRLVHE 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 57/325 (17%), Positives = 93/325 (28%), Gaps = 99/325 (30%)

Query: 47  KSVLQREFPKAKSIEVQDVSGGCGAMFEIMV---ISPE--FKGLSTVKQHMLVNKDSSSN 101
           K+ +  +     S +VQ        +F + +    SPE   + L  +   +  N  S S+
Sbjct: 163 KTWVALDV--CLSYKVQCKMDF--KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 102 HS-PYSRNFHQTTVAYSRNFHQTTVAYSRNFLQL---CNSKELN-FRNFQ----QTT--- 149
           HS       H       R        Y    L L    N+K  N F N       TT   
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFK 275

Query: 150 -------VAYSSRICYDLHLQDG--SLESSTCLLQWAG--------------PKSLA--- 183
                   A ++ I  D H        E  + LL++                P+ L+   
Sbjct: 276 QVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 184 -----------RYCTQNAAQITEA------NLKSVLQRE-------FPK-----AKSIEV 214
                       +   N  ++T         L+    R+       FP         + +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 215 --QDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGI--SYKCNR------HWKS 264
              DV        ++MV+  +    S V++    + +S+  I    K         H   
Sbjct: 395 IWFDVIK-----SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--R 447

Query: 265 RILTS--ALKAVVHDHDRPKTNKQY 287
            I+      K    D   P    QY
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQY 472

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 67/433 (15%), Positives = 109/433 (25%), Gaps = 169/433 (39%)

Query: 11  PITDTEEIDSIFTLMTQKSLARY-----CTQNAAQITEANLKSVLQREFP---------- 55
            I   EEID I       S          ++   ++ +  ++ VL+  +           
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 56  KAKSIEVQ-------------------DVS--------------------------GGCG 70
           +  S+  +                   +VS                           G G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 71  ----------------AM-FEIM------VISPE--FKGLSTVKQHMLVNKDSSSNHS-P 104
                            M F+I         SPE   + L  +   +  N  S S+HS  
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 105 YSRNFHQTTVAYSRNFHQTTVAYSRNFLQL---CNSKELN-FRNFQ----QTT------- 149
                H       R        Y    L L    N+K  N F N       TT       
Sbjct: 223 IKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTD 279

Query: 150 ---VAYSSRICYDLHLQDG--SLESSTCLLQWAG--PKSLAR-YCTQN-------AAQIT 194
               A ++ I  D H        E  + LL++    P+ L R   T N       A  I 
Sbjct: 280 FLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 195 EA-----NLKSVLQREFPKA--KSIEVQDVSGGCGAMFEIMVISPE-------------F 234
           +      N K V   +       S+ V +       MF+ + + P              F
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 235 KGLSTVKQHM---LVNKVSLSGISYKCNRHWKSRILTSALKAVVHDHDRPKTNKQYDLRP 291
             + +    +   L    SL        +  K   ++      +            +L+ 
Sbjct: 398 DVIKSDVMVVVNKLHKY-SL------VEKQPKESTIS------IPSI-------YLELKV 437

Query: 292 SKMALKAEIKEMH 304
                      +H
Sbjct: 438 K----LENEYALH 446

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	99.91
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	99.9
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	99.9
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	99.9
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	99.9
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	99.89
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	99.89
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	99.89
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	99.88
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	99.88
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	99.88
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	99.88
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	99.85
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	99.85
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	99.85
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	99.84
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	99.82
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	99.79

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.91  E-value=1.6e-24  Score=182.46  Aligned_cols=86  Identities=22%  Similarity=0.353  Sum_probs=78.1

Q ss_pred             hhccccCcchHHHHHHHHhhhCCCCceEEEEeccC------CCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCccc
Q psy6834          33 YCTQNAAQITEANLKSVLQREFPKAKSIEVQDVSG------GCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYS  106 (313)
Q Consensus        33 f~~~s~~~~~~eeI~~kLq~~lp~~~~VeV~D~Sg------G~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~I  106 (313)
                      +.+....++.+++|+++|+++|+ +.+|+|+|+|+      |||+||+|+|||+.|+||++|+|||+||++|+++|++.|
T Consensus        18 ~~~~~~~~~~~~~I~~~L~~~l~-p~~l~V~DeS~~H~~~~G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~~~I   96 (123)
T 1v60_A           18 SAGSAAAGPVEAAIRAKLEQALS-PEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPV   96 (123)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTC-CSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTTC
T ss_pred             ccCCCCCCcHHHHHHHHHHhhCC-CeEEEEEECcccccCCCCCCCeEEEEEEehhhCCCCHHHHHHHHHHHHHHHHcCCc
Confidence            33344567899999999999998 56799999995      899999999999999999999999999999999999889


Q ss_pred             ceeeeeccccccc
Q psy6834         107 RNFHQTTVAYSRN  119 (313)
Q Consensus       107 HAL~i~T~t~s~~  119 (313)
                      |||+|+|+||+|.
T Consensus        97 HALsi~t~TP~Ew  109 (123)
T 1v60_A           97 HALAIQAKTPAQW  109 (123)
T ss_dssp             SEEEEEEECTTTT
T ss_pred             ceeEeEecCHHHH
Confidence            9999999999983

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}

Probab=99.90  E-value=2e-24  Score=178.35  Aligned_cols=76  Identities=20%  Similarity=0.312  Sum_probs=72.9

Q ss_pred             chHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834          41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR  118 (313)
Q Consensus        41 ~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~  118 (313)
                      ++.++|+++|+++|+ +.+|+|+|+|+|||+||+|+|||+.|+||++|+|||+||++|+++|+. ||||+|+|+||+|
T Consensus        24 m~~~~I~~~L~~~l~-p~~l~V~DeS~G~gsHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~-IHALsi~t~TP~E   99 (108)
T 2kdn_A           24 CIQKVIEDKLSSALK-PTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQN-IHAFSMKCHTPLE   99 (108)
T ss_dssp             SHHHHHHHHHHHHHC-CSEEEEEECCCSSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGG-CSCEEEEEECHHH
T ss_pred             CcHHHHHHHHHhhCC-CcEEEEEeCCCCCCceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHhc-CceEEEEecChHH
Confidence            588999999999998 567999999999999999999999999999999999999999999997 9999999999988

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}

Probab=99.90  E-value=2e-24  Score=168.12  Aligned_cols=73  Identities=25%  Similarity=0.383  Sum_probs=68.2

Q ss_pred             CcchHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccc
Q psy6834          39 AQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAY  116 (313)
Q Consensus        39 ~~~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~  116 (313)
                      |+++.++|+++|+++|+ +.+++|+|+| |||+||+|+|||+.|+||++|+|||+||++|+++   .||||+++|+||
T Consensus         4 M~m~~~~I~~~L~~~l~-~~~l~V~d~S-G~g~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e---~iHALsi~t~tp   76 (76)
T 2kz0_A            4 MTVTQSQLELLIRNAFP-EAEITVTSLV-GDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDGL---NIHAIQIQTGCK   76 (76)
T ss_dssp             SSCTTHHHHHHHHHHCT-TEEEEEECCS-STTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS---CCCSSSEEECCC
T ss_pred             CcccHHHHHHHHHhhCC-CcEEEEEECC-CCccEEEEEEEchHhCCCCHHHHHHHHHHHhccC---CceEEEEEEeCC
Confidence            45678999999999998 5679999999 7899999999999999999999999999999999   699999999886

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}

Probab=99.90  E-value=2.1e-24  Score=177.44  Aligned_cols=77  Identities=22%  Similarity=0.432  Sum_probs=73.3

Q ss_pred             cchHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834          40 QITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR  118 (313)
Q Consensus        40 ~~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~  118 (313)
                      +...++|+++|+++|+ +.+|+|+|+|+|||+||+|+|||+.|+||++|+|||+||++|+++|+ .||||+++|+||+|
T Consensus        22 M~~~~~I~~kL~~~l~-p~~l~V~D~S~g~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~-~IHALsi~t~TP~E   98 (105)
T 3o2e_A           22 MVSKSIVEERLRSMLS-PQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMP-QIHAFTMKCLTPGE   98 (105)
T ss_dssp             CCCHHHHHHHHHHHHC-CSEEEEEECCBTTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGG-GEEEEEEEEECHHH
T ss_pred             CcHHHHHHHHHHhhCC-CCEEEEEECCCCCCcEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHh-cCceeEEEeCCHHH
Confidence            3589999999999997 56799999999999999999999999999999999999999999998 69999999999998

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}

Probab=99.90  E-value=3.3e-24  Score=176.53  Aligned_cols=77  Identities=18%  Similarity=0.314  Sum_probs=72.8

Q ss_pred             chHHHHHHHHhhhCCCCceEEEEecc------CCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecc
Q psy6834          41 ITEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTV  114 (313)
Q Consensus        41 ~~~eeI~~kLq~~lp~~~~VeV~D~S------gG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~  114 (313)
                      ++.++|+++|+++|+ +.+|+|+|+|      +|||+||+|+|||+.|+||++|+|||+||++|+++|++.||||+|+|+
T Consensus         9 ~~~~~I~~~L~~~l~-p~~l~V~d~S~~H~~~~G~gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IHALsi~t~   87 (107)
T 2dhm_A            9 MIRERIEEKLRAAFQ-PVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTY   87 (107)
T ss_dssp             CHHHHHHHHHHHHTC-CSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCCCEEEEE
T ss_pred             CHHHHHHHHHHhcCC-CcEEEEEECcccccCCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceEEEEec
Confidence            478999999999997 5679999999      489999999999999999999999999999999999988999999999


Q ss_pred             cccc
Q psy6834         115 AYSR  118 (313)
Q Consensus       115 t~s~  118 (313)
                      ||+|
T Consensus        88 TP~E   91 (107)
T 2dhm_A           88 TIKE   91 (107)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9988

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1

Probab=99.89  E-value=3.3e-24  Score=178.22  Aligned_cols=78  Identities=24%  Similarity=0.494  Sum_probs=73.8

Q ss_pred             CcchHHHHHHHHhhhCCCCceEEEEecc-CCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeeccccc
Q psy6834          39 AQITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYS  117 (313)
Q Consensus        39 ~~~~~eeI~~kLq~~lp~~~~VeV~D~S-gG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s  117 (313)
                      |.++.++|+++|+++|+ +.+|+|+|+| +|||+||+|+|||+.|+||++|+|||+||++|+++|+. ||||+|+|+||+
T Consensus        28 M~m~~~~I~~~L~~~l~-p~~l~V~DeS~~G~gsHF~v~IVS~~F~Gks~V~RHRlVy~aL~eei~~-IHALsi~t~TP~  105 (113)
T 1v9j_A           28 MELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPH-IHAFEQKTLTPE  105 (113)
T ss_dssp             SSSCHHHHHHHHHHHHT-CSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGG-CSSEEEEEECHH
T ss_pred             ccCcHHHHHHHHHhhCC-CcEEEEEeccCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHhc-CceEEEEecChH
Confidence            55789999999999998 5679999999 68999999999999999999999999999999999997 999999999998


Q ss_pred             c
Q psy6834         118 R  118 (313)
Q Consensus       118 ~  118 (313)
                      |
T Consensus       106 E  106 (113)
T 1v9j_A          106 Q  106 (113)
T ss_dssp             H
T ss_pred             H
Confidence            8

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}

Probab=99.89  E-value=1.3e-23  Score=164.75  Aligned_cols=75  Identities=20%  Similarity=0.378  Sum_probs=69.9

Q ss_pred             cchHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834          40 QITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR  118 (313)
Q Consensus        40 ~~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~  118 (313)
                      +++.++|+++|+++|| +.+++|+   ||||+||+|+|||+.|+||++|+|||+||++|+++|++.||||+++|+||+|
T Consensus         5 mm~~~~I~~~L~~~l~-~~~l~V~---G~~gsHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~~~iHALsi~t~Tp~E   79 (80)
T 1xs3_A            5 PLDAETIRKLIESGLP-EARVDVQ---GEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDE   79 (80)
T ss_dssp             CCHHHHHHHHHHHHSS-SCEEEEE---SCTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCCEEEEECGGG
T ss_pred             cCCHHHHHHHHHhhCC-CcEEEEE---cCCCCEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHcCCcceEEEEecCCCC
Confidence            4578999999999998 5679998   4489999999999999999999999999999999999889999999999987

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1

Probab=99.89  E-value=9e-24  Score=175.62  Aligned_cols=72  Identities=26%  Similarity=0.521  Sum_probs=62.3

Q ss_pred             ccccccCCCccccccccccccccHHHHHHHHhhhCCCCceEEEEeCC-CCCCceeEEEEECcCCCCCChHHHHHHHHHHh
Q psy6834         172 CLLQWAGPKSLARYCTQNAAQITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNKVS  250 (313)
Q Consensus       172 cl~~~~~~~~~~~~~t~~~m~~~e~~I~~kL~~~Lp~a~~v~V~D~S-gGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L  250 (313)
                      .-++|-|+.+..      .|.|.+++|+++|+++|+ |.+|+|+|+| +|||+||+|.|||+.|+||++|+|||+||++|
T Consensus        15 ~~~~~~~~~~~~------~M~m~~~~I~~~L~~~l~-p~~l~V~DeS~~G~gsHF~v~IVS~~F~Gks~V~RHRlVy~aL   87 (113)
T 1v9j_A           15 ASLVPRGSEGAA------TMELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL   87 (113)
T ss_dssp             CCCCSSCCCCSS------SSSSCHHHHHHHHHHHHT-CSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHT
T ss_pred             cceeeccCcccc------cccCcHHHHHHHHHhhCC-CcEEEEEeccCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHH
Confidence            345677766411      477899999999999996 6789999999 78999999999999999999999999999944

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}

Probab=99.88  E-value=2.9e-23  Score=163.67  Aligned_cols=74  Identities=20%  Similarity=0.335  Sum_probs=69.6

Q ss_pred             chHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecccccc
Q psy6834          41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTVAYSR  118 (313)
Q Consensus        41 ~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~t~s~  118 (313)
                      ++.++|+++|+++|| +.+|+|+   +|||+||+|+|||+.|+||++|+|||+||++|+++|.+.||||+++|+||+|
T Consensus         5 m~~~~I~~~L~~~l~-~~~l~V~---~g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~~~iHAL~i~t~Tp~E   78 (82)
T 3tr3_A            5 VTTHDIKQWIETGLS-ESRVISA---EGDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIHALSLKTYTPDE   78 (82)
T ss_dssp             CCHHHHHHHHHHHST-TCEEEEE---EECSSEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGTTTCSEEEEEEECHHH
T ss_pred             chHHHHHHHHHhhCC-CcEEEEE---cCCCCeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceEEEEeCCHHH
Confidence            588999999999998 5579998   4689999999999999999999999999999999998789999999999998

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}

Probab=99.88  E-value=3.9e-23  Score=170.60  Aligned_cols=55  Identities=25%  Similarity=0.488  Sum_probs=53.1

Q ss_pred             ccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHH
Q psy6834         193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK  248 (313)
Q Consensus       193 ~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~  248 (313)
                      |.+++|+++|+++|+ |.+|+|+|+|+|||+||+|.|||+.|+||++|+||||||+
T Consensus        24 m~~~~I~~~L~~~l~-p~~l~V~DeS~G~gsHF~v~IVS~~F~Gks~v~RHRlVy~   78 (108)
T 2kdn_A           24 CIQKVIEDKLSSALK-PTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNT   78 (108)
T ss_dssp             SHHHHHHHHHHHHHC-CSEEEEEECCCSSSCCEEEEEECGGGTTCCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhhCC-CcEEEEEeCCCCCCceEEEEEEehhhCCCCHHHHHHHHHH
Confidence            788999999999996 6789999999999999999999999999999999999999

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}

Probab=99.88  E-value=2.5e-23  Score=170.98  Aligned_cols=57  Identities=28%  Similarity=0.541  Sum_probs=53.7

Q ss_pred             cHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhh
Q psy6834         194 TEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL  251 (313)
Q Consensus       194 ~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~  251 (313)
                      .+++|+++|+++|+ |.+|+|+|+|+|||+||+|.|||+.|+||++|+|||+||++|.
T Consensus        24 ~~~~I~~kL~~~l~-p~~l~V~D~S~g~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~   80 (105)
T 3o2e_A           24 SKSIVEERLRSMLS-PQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIA   80 (105)
T ss_dssp             CHHHHHHHHHHHHC-CSEEEEEECCBTTBEEEEEEEECGGGTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCC-CCEEEEEECCCCCCcEEEEEEEchHhCCCCHHHHHHHHHHHHH
Confidence            78999999999996 7789999999999999999999999999999999999999554

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}

Probab=99.88  E-value=1.8e-23  Score=162.71  Aligned_cols=73  Identities=29%  Similarity=0.549  Sum_probs=68.3

Q ss_pred             cccccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhhhhhhhhchhhhhhhhhhh
Q psy6834         190 AAQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTS  269 (313)
Q Consensus       190 ~m~~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~haisikT~~eW~~~~~~~  269 (313)
                      .|.|.+++|+++|+++|+ +.+++|+|+| |||+||+|.|||+.|+||++|+|||+||+                     
T Consensus         3 ~M~m~~~~I~~~L~~~l~-~~~l~V~d~S-G~g~Hf~v~IVS~~F~G~s~v~rHr~Vy~---------------------   59 (76)
T 2kz0_A            3 SMTVTQSQLELLIRNAFP-EAEITVTSLV-GDNNHYSIKVISSQFQGKSKLEQHRMIYK---------------------   59 (76)
T ss_dssp             CSSCTTHHHHHHHHHHCT-TEEEEEECCS-STTSCCEEEEEEGGGTTCCHHHHHHHHHH---------------------
T ss_pred             cCcccHHHHHHHHHhhCC-CcEEEEEECC-CCccEEEEEEEchHhCCCCHHHHHHHHHH---------------------
Confidence            577888999999999996 6789999999 69999999999999999999999999999                     


Q ss_pred             hhhhhcccCCCCccccccCCccchHHHHHHHhhhhceeeeecc
Q psy6834         270 ALKAVVHDHDRPKTNKQYDLRPSKMALKAEIKEMHGLRIHTDI  312 (313)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~  312 (313)
                                               +|++|  ++|||+|+|.+
T Consensus        60 -------------------------~L~~e--~iHALsi~t~t   75 (76)
T 2kz0_A           60 -------------------------VLDGL--NIHAIQIQTGC   75 (76)
T ss_dssp             -------------------------HTTTS--CCCSSSEEECC
T ss_pred             -------------------------HhccC--CceEEEEEEeC
Confidence                                     88888  89999999975

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1

Probab=99.85  E-value=2.6e-22  Score=162.84  Aligned_cols=73  Identities=18%  Similarity=0.295  Sum_probs=68.5

Q ss_pred             chHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccC-cccceeeeecccccc
Q psy6834          41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHS-PYSRNFHQTTVAYSR  118 (313)
Q Consensus        41 ~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~-~~IHAL~i~T~t~s~  118 (313)
                      ++.++|+++|+++|+ +.+|+|+    |||+||+|+|||+.|+||++|+|||+||++|+++|+ +.||||+++|+||+|
T Consensus         6 m~~~~I~~~L~~~l~-p~~l~V~----G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHALsi~t~TP~E   79 (97)
T 1ny8_A            6 MENNEIQSVLMNALS-LQEVHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAE   79 (97)
T ss_dssp             CCCHHHHHHHHHHHC-CSEEEEE----ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEEEECCHHH
T ss_pred             cCHHHHHHHHHhhCC-CcEEEEE----cCCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcceEEeEecChHH
Confidence            366899999999998 5679998    799999999999999999999999999999999999 489999999999988

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}

Probab=99.85  E-value=9.9e-22  Score=161.78  Aligned_cols=71  Identities=18%  Similarity=0.432  Sum_probs=59.9

Q ss_pred             ccHHHHHHHHhhhCCCCceEEEEeCC------CCCCceeEEEEECcCCCCCChHHHHHHHHHHhh-------hhhhhhch
Q psy6834         193 ITEANLKSVLQREFPKAKSIEVQDVS------GGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL-------SGISYKCN  259 (313)
Q Consensus       193 ~~e~~I~~kL~~~Lp~a~~v~V~D~S------gGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~-------haisikT~  259 (313)
                      +.+++|+++|+++|+ +.+|+|+|+|      +|||+||+|.|||+.|+||++|+||||||++|.       |+++|+|+
T Consensus         9 ~~~~~I~~~L~~~l~-p~~l~V~d~S~~H~~~~G~gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IHALsi~t~   87 (107)
T 2dhm_A            9 MIRERIEEKLRAAFQ-PVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTY   87 (107)
T ss_dssp             CHHHHHHHHHHHHTC-CSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCCCEEEEE
T ss_pred             CHHHHHHHHHHhcCC-CcEEEEEECcccccCCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceEEEEec
Confidence            467999999999996 6789999999      489999999999999999999999999999653       34455554


Q ss_pred             --hhhhh
Q psy6834         260 --RHWKS  264 (313)
Q Consensus       260 --~eW~~  264 (313)
                        +||++
T Consensus        88 TP~Ew~~   94 (107)
T 2dhm_A           88 TIKEWEG   94 (107)
T ss_dssp             CHHHHHT
T ss_pred             CHHHHHh
Confidence              36654

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.85  E-value=2.7e-21  Score=162.72  Aligned_cols=60  Identities=30%  Similarity=0.567  Sum_probs=54.9

Q ss_pred             cccccHHHHHHHHhhhCCCCceEEEEeCCC------CCCceeEEEEECcCCCCCChHHHHHHHHHHh
Q psy6834         190 AAQITEANLKSVLQREFPKAKSIEVQDVSG------GCGAMFEIMVISPEFKGLSTVKQHMLVNKVS  250 (313)
Q Consensus       190 ~m~~~e~~I~~kL~~~Lp~a~~v~V~D~Sg------GcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L  250 (313)
                      ...+.+++|+++|+++|+ +.+|+|+|+|+      |||+||+|.|||+.|+||++|+||||||++|
T Consensus        23 ~~~~~~~~I~~~L~~~l~-p~~l~V~DeS~~H~~~~G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL   88 (123)
T 1v60_A           23 AAGPVEAAIRAKLEQALS-PEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEAL   88 (123)
T ss_dssp             SSCHHHHHHHHHHHHHTC-CSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHhhCC-CeEEEEEECcccccCCCCCCCeEEEEEEehhhCCCCHHHHHHHHHHHH
Confidence            345678999999999996 77899999995      8999999999999999999999999999955

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}

Probab=99.84  E-value=1.2e-21  Score=153.72  Aligned_cols=72  Identities=25%  Similarity=0.499  Sum_probs=65.6

Q ss_pred             ccccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhhhhhhhhchhhhhhhhhhhh
Q psy6834         191 AQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSLSGISYKCNRHWKSRILTSA  270 (313)
Q Consensus       191 m~~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~haisikT~~eW~~~~~~~~  270 (313)
                      |.|.+++|+++|+++|+ |.+++|+   ||||+||+|.|||+.|+||++|+|||+||+                      
T Consensus         4 ~mm~~~~I~~~L~~~l~-~~~l~V~---G~~gsHf~v~IVS~~F~G~~~v~RHrlVy~----------------------   57 (80)
T 1xs3_A            4 RPLDAETIRKLIESGLP-EARVDVQ---GEDGVHFEATVVSPAFVGKAPLARHRMVYA----------------------   57 (80)
T ss_dssp             SCCHHHHHHHHHHHHSS-SCEEEEE---SCTTSCCEEEEECGGGCSSCCHHHHHHHHH----------------------
T ss_pred             ccCCHHHHHHHHHhhCC-CcEEEEE---cCCCCEEEEEEEchhhCCCcHHHHHHHHHH----------------------
Confidence            45789999999999996 6789998   569999999999999999999999999999                      


Q ss_pred             hhhhcccCCCCccccccCCccchHHHHHHHhh-hhceeeeecc
Q psy6834         271 LKAVVHDHDRPKTNKQYDLRPSKMALKAEIKE-MHGLRIHTDI  312 (313)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~  312 (313)
                                              +|++||++ +|||+|+|.+
T Consensus        58 ------------------------~L~~e~~~~iHALsi~t~T   76 (80)
T 1xs3_A           58 ------------------------TLGELMGGAIHALQLKTLT   76 (80)
T ss_dssp             ------------------------HTTSTTTTCCSCCEEEEEC
T ss_pred             ------------------------HHHHHHcCCcceEEEEecC
Confidence                                    89999974 9999999864

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}

Probab=99.82  E-value=7.9e-21  Score=149.77  Aligned_cols=55  Identities=24%  Similarity=0.433  Sum_probs=50.3

Q ss_pred             ccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhh
Q psy6834         193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL  251 (313)
Q Consensus       193 ~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~  251 (313)
                      |..++|+++|+++|+ +.+|+|+   ||||+||+|.|||+.|+||++|+|||+||++|.
T Consensus         5 m~~~~I~~~L~~~l~-~~~l~V~---~g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~   59 (82)
T 3tr3_A            5 VTTHDIKQWIETGLS-ESRVISA---EGDGHHFEAVVLCPTFEGQTALTRHRLVYNALG   59 (82)
T ss_dssp             CCHHHHHHHHHHHST-TCEEEEE---EECSSEEEEEEECGGGTTCCHHHHHHHHHHHTG
T ss_pred             chHHHHHHHHHhhCC-CcEEEEE---cCCCCeEEEEEEchhhCCCCHHHHHHHHHHHHH
Confidence            688999999999997 6789998   579999999999999999999999999999443

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1

Probab=99.79  E-value=7.6e-20  Score=148.34  Aligned_cols=67  Identities=24%  Similarity=0.487  Sum_probs=55.9

Q ss_pred             ccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhh--------hhhhhhch--hhh
Q psy6834         193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL--------SGISYKCN--RHW  262 (313)
Q Consensus       193 ~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~--------haisikT~--~eW  262 (313)
                      |..++|+++|+++|+ |.+|+|.    |||+||+|.|||+.|+||++|+|||+||++|.        |+++++|+  +||
T Consensus         6 m~~~~I~~~L~~~l~-p~~l~V~----G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHALsi~t~TP~Ew   80 (97)
T 1ny8_A            6 MENNEIQSVLMNALS-LQEVHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEW   80 (97)
T ss_dssp             CCCHHHHHHHHHHHC-CSEEEEE----ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEEEECCHHHH
T ss_pred             cCHHHHHHHHHhhCC-CcEEEEE----cCCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcceEEeEecChHHH
Confidence            466999999999996 6789998    69999999999999999999999999999653        34455554  466


Q ss_pred             hh
Q psy6834         263 KS  264 (313)
Q Consensus       263 ~~  264 (313)
                      ++
T Consensus        81 ~~   82 (97)
T 1ny8_A           81 AR   82 (97)
T ss_dssp             HH
T ss_pred             Hh
Confidence            55

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1v9ja_	113	d.52.6.1 (A:) BolA-like protein {Mouse (Mus muscul	4e-07
d1v9ja_	113	d.52.6.1 (A:) BolA-like protein {Mouse (Mus muscul	1e-06
d1ny8a_	97	d.52.6.1 (A:) Hypothetical protein YrbA {Escherich	7e-07
d1ny8a_	97	d.52.6.1 (A:) Hypothetical protein YrbA {Escherich	1e-06

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 177 AGPKSLARYCTQNAA-QITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEF 234
           +G   + R     A  +++   L+  L+++   A+ +EV+D +   C   F ++V+S +F
Sbjct: 13  SGASLVPRGSEGAATMELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKF 71

Query: 235 KGLSTVKQHMLVNKV 249
           +G   +++H LVN+ 
Sbjct: 72  EGKPLLQRHRLVNEC 86

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 41 ITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
          ++   L+  L+++   A+ +EV+D +   C   F ++V+S +F+G   +++H LVN+
Sbjct: 30 LSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNE 85

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (105), Expect = 7e-07
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 193 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKV 249
           +    ++SVL       + + V     G G+ F+++ +   F G+S VK+   V   
Sbjct: 6   MENNEIQSVLMNALSLQE-VHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGP 57

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNK 96
          +    ++SVL       + + V     G G+ F+++ +   F G+S VK+   V  
Sbjct: 6  MENNEIQSVLMNALSLQE-VHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYG 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1v9ja_	113	BolA-like protein {Mouse (Mus musculus) [TaxId: 10	99.86
d1v9ja_	113	BolA-like protein {Mouse (Mus musculus) [TaxId: 10	99.85
d1ny8a_	97	Hypothetical protein YrbA {Escherichia coli [TaxId	99.83
d1ny8a_	97	Hypothetical protein YrbA {Escherichia coli [TaxId	99.74

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=5.8e-23  Score=168.76  Aligned_cols=81  Identities=23%  Similarity=0.476  Sum_probs=75.3

Q ss_pred             cccCcchHHHHHHHHhhhCCCCceEEEEecc-CCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCcccceeeeecc
Q psy6834          36 QNAAQITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSPYSRNFHQTTV  114 (313)
Q Consensus        36 ~s~~~~~~eeI~~kLq~~lp~~~~VeV~D~S-gG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~~IHAL~i~T~  114 (313)
                      +..|++.+++|+++|+++|+ +.+|+|+|+| .|||+||+|+|||+.|+||++|+|||+||++|+++|++ ||||+|+|+
T Consensus        25 ~~~m~~~~e~I~~kL~~~~~-~~~leV~D~S~~h~G~Hf~i~IvS~~F~g~s~v~rHr~Vy~~L~~ei~~-iHAlsi~t~  102 (113)
T d1v9ja_          25 AATMELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPH-IHAFEQKTL  102 (113)
T ss_dssp             SSSSSSCHHHHHHHHHHHHT-CSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGG-CSSEEEEEE
T ss_pred             CCCCcccHHHHHHHHHhhCC-CcEEEEEecCCCCCCceEEEEEEeccccCCchhHHHHhHHHHHHHHHhc-ceeeEEEeC
Confidence            34577889999999999997 6689999999 57899999999999999999999999999999999975 999999999


Q ss_pred             cccc
Q psy6834         115 AYSR  118 (313)
Q Consensus       115 t~s~  118 (313)
                      ||+|
T Consensus       103 Tp~E  106 (113)
T d1v9ja_         103 TPEQ  106 (113)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9998

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.5e-22  Score=163.40  Aligned_cols=61  Identities=26%  Similarity=0.585  Sum_probs=56.5

Q ss_pred             ccccccHHHHHHHHhhhCCCCceEEEEeCC-CCCCceeEEEEECcCCCCCChHHHHHHHHHHh
Q psy6834         189 NAAQITEANLKSVLQREFPKAKSIEVQDVS-GGCGAMFEIMVISPEFKGLSTVKQHMLVNKVS  250 (313)
Q Consensus       189 ~~m~~~e~~I~~kL~~~Lp~a~~v~V~D~S-gGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L  250 (313)
                      ..|.+.++.|+++|+++|+ +.+|+|.|+| +|||+||+|.|||+.|+||++|+|||+||++|
T Consensus        26 ~~m~~~~e~I~~kL~~~~~-~~~leV~D~S~~h~G~Hf~i~IvS~~F~g~s~v~rHr~Vy~~L   87 (113)
T d1v9ja_          26 ATMELSADYLREKLRQDLE-AEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL   87 (113)
T ss_dssp             SSSSSCHHHHHHHHHHHHT-CSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHT
T ss_pred             CCCcccHHHHHHHHHhhCC-CcEEEEEecCCCCCCceEEEEEEeccccCCchhHHHHhHHHHH
Confidence            3788889999999999996 7789999999 67999999999999999999999999999944

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.4e-21  Score=156.46  Aligned_cols=73  Identities=18%  Similarity=0.291  Sum_probs=68.1

Q ss_pred             chHHHHHHHHhhhCCCCceEEEEeccCCCcCeeEEEEECccCCCCChHHHHHHHHHHHhhccCc-ccceeeeecccccc
Q psy6834          41 ITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKDSSSNHSP-YSRNFHQTTVAYSR  118 (313)
Q Consensus        41 ~~~eeI~~kLq~~lp~~~~VeV~D~SgG~GsHF~I~VVSd~FeG~s~VqRHRlVY~~L~eei~~-~IHAL~i~T~t~s~  118 (313)
                      +..++|+++|+++||+ .+|+|.    |+|+||+|+|||+.|+|||+|+|||+||++|+++|++ .||||+++|+||+|
T Consensus         6 M~~~eI~~~L~~~l~~-~~v~V~----g~g~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IHAlsikt~Tp~E   79 (97)
T d1ny8a_           6 MENNEIQSVLMNALSL-QEVHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAE   79 (97)
T ss_dssp             CCCHHHHHHHHHHHCC-SEEEEE----ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEEEECCHHH
T ss_pred             CCHHHHHHHHHhhCCC-cEEEEe----CCCcEEEEEEEcHHhCCCCHHHHHHHHHHHHHHHHcCCCceeeEeEeCCHHH
Confidence            4568999999999985 569997    7899999999999999999999999999999999986 79999999999999

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5.1e-19  Score=141.52  Aligned_cols=81  Identities=25%  Similarity=0.449  Sum_probs=69.3

Q ss_pred             ccccHHHHHHHHhhhCCCCceEEEEeCCCCCCceeEEEEECcCCCCCChHHHHHHHHHHhh--------hhhhhhch--h
Q psy6834         191 AQITEANLKSVLQREFPKAKSIEVQDVSGGCGAMFEIMVISPEFKGLSTVKQHMLVNKVSL--------SGISYKCN--R  260 (313)
Q Consensus       191 m~~~e~~I~~kL~~~Lp~a~~v~V~D~SgGcGsHF~I~IVS~~F~Gks~VkRHRlVy~~L~--------haisikT~--~  260 (313)
                      ..|..++|+++|+++|| +.+|+|.    |||+||+|.|||+.|+|||+|+|||+||++|.        ||++|||+  +
T Consensus         4 ~~M~~~eI~~~L~~~l~-~~~v~V~----g~g~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IHAlsikt~Tp~   78 (97)
T d1ny8a_           4 DPMENNEIQSVLMNALS-LQEVHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPA   78 (97)
T ss_dssp             CCCCCHHHHHHHHHHHC-CSEEEEE----ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEEEECCHH
T ss_pred             CcCCHHHHHHHHHhhCC-CcEEEEe----CCCcEEEEEEEcHHhCCCCHHHHHHHHHHHHHHHHcCCCceeeEeEeCCHH
Confidence            45667899999999997 5679985    68999999999999999999999999999984        77789987  6


Q ss_pred             hhhh-hhhhhhhhhhcc
Q psy6834         261 HWKS-RILTSALKAVVH  276 (313)
Q Consensus       261 eW~~-~~~~~~~~~~~~  276 (313)
                      ||++ +.+-+++.+--|
T Consensus        79 Ew~~~kk~~~~~~~~~~   95 (97)
T d1ny8a_          79 EWARDRKLNGFLEHHHH   95 (97)
T ss_dssp             HHHHHHHTTSSSSCSCC
T ss_pred             HHHHhhhhhhHHHhhcc
Confidence            9987 777777766544