Psyllid ID: psy7099

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MVKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYR
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccccccEEEcc
Coil and Loop (DISEMBL)
MVKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDampkqcklprydygspgvlgyr
Flexible Loop (DISEMBL)
MVKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAmpkqcklprydygspgvlgyr
Low Complexity Region (SEG)
MVKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYR
Disordered region (IsUnstruct)
**KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYG********
Disordered Region (DISOPRED)
***FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYR
Disordered Region (DISEMBL)
MVKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYR
Disordered Region (DISPRO)
*VKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q299G2	1291	Cytoplasmic FMR1-interact	yes	N/A	0.96	0.055	0.767	2e-26
Q9VF87	1291	Cytoplasmic FMR1-interact	yes	N/A	0.96	0.055	0.767	2e-26
Q7TMB8	1253	Cytoplasmic FMR1-interact	yes	N/A	0.946	0.056	0.661	2e-24
Q7L576	1253	Cytoplasmic FMR1-interact	yes	N/A	0.946	0.056	0.661	2e-24
Q90YM8	1253	Cytoplasmic FMR1-interact	yes	N/A	0.946	0.056	0.661	2e-24
Q5SQX6	1253	Cytoplasmic FMR1-interact	no	N/A	0.946	0.056	0.661	2e-24
Q5R414	1253	Cytoplasmic FMR1-interact	no	N/A	0.946	0.056	0.661	2e-24
Q96F07	1278	Cytoplasmic FMR1-interact	no	N/A	0.946	0.055	0.661	3e-24
Q6GQD1	1253	Cytoplasmic FMR1-interact	N/A	N/A	0.946	0.056	0.661	3e-24
O44518	1262	Cytoplasmic FMR1-interact	yes	N/A	0.893	0.053	0.462	5e-13

>sp|Q299G2|CYFIP_DROPS Cytoplasmic FMR1-interacting protein OS=Drosophila pseudoobscura pseudoobscura GN=Sra-1 PE=3 SV=1

 Score =  117 bits (292), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/73 (76%), Positives = 62/73 (84%), Gaps = 1/73 (1%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLK-IVTSLIQGSLLQFTKTLMDAMPKQCKL 61
           ++ GFVG+ HF AMCRLLGYQGIAVVM+ +LK IV  LIQGSLLQFTKTLM AMPK CKL
Sbjct: 925 QYTGFVGSPHFHAMCRLLGYQGIAVVMDIILKDIVKPLIQGSLLQFTKTLMIAMPKSCKL 984

Query: 62  PRYDYGSPGVLGY 74
           PR +YGSPGVL Y
Sbjct: 985 PRCEYGSPGVLSY 997

Plays a role in guidance and morphology of central and peripheral axons and in synaptic morphology. Also required for formation of cell membrane protrusions and for bristle development.
Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9VF87|CYFIP_DROME Cytoplasmic FMR1-interacting protein OS=Drosophila melanogaster GN=Sra-1 PE=1 SV=1

 Score =  117 bits (292), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/73 (76%), Positives = 62/73 (84%), Gaps = 1/73 (1%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLK-IVTSLIQGSLLQFTKTLMDAMPKQCKL 61
           ++ GFVG+ HF AMCRLLGYQGIAVVM+ +LK IV  LIQGSLLQFTKTLM AMPK CKL
Sbjct: 925 QYTGFVGSPHFHAMCRLLGYQGIAVVMDIILKDIVKPLIQGSLLQFTKTLMIAMPKSCKL 984

Query: 62  PRYDYGSPGVLGY 74
           PR +YGSPGVL Y
Sbjct: 985 PRCEYGSPGVLSY 997

Plays a role in guidance and morphology of central and peripheral axons and in synaptic morphology. Also required for formation of cell membrane protrusions and for bristle development.

Drosophila melanogaster (taxid: 7227)

>sp|Q7TMB8|CYFP1_MOUSE Cytoplasmic FMR1-interacting protein 1 OS=Mus musculus GN=Cyfip1 PE=1 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 4   FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
           +  FVG  HF+ +CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR
Sbjct: 905 YRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPR 964

Query: 64  YDYGSPGVLGY 74
           ++YGSPG+L +
Sbjct: 965 HEYGSPGILEF 975

Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit is an adapter between EIF4E and FMR1. Promotes the translation repression activity of FMR1 in brain probably by mediating its association with EIF4E and mRNA (By similarity). Regulates formation of membrane ruffles and lamellipodia. Plays a role in axon outgrowth. Binds to F-actin but not to RNA. Part of the WAVE complex that regulates actin filament reorganization via its interaction with the Arp2/3 complex. Actin remodeling activity is regulated by RAC1. Regulator of epithelial morphogenesis. May act as an invasion suppressor in cancers.

Mus musculus (taxid: 10090)

>sp|Q7L576|CYFP1_HUMAN Cytoplasmic FMR1-interacting protein 1 OS=Homo sapiens GN=CYFIP1 PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 4   FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
           +  FVG  HF+ +CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR
Sbjct: 905 YRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPR 964

Query: 64  YDYGSPGVLGY 74
           ++YGSPG+L +
Sbjct: 965 HEYGSPGILEF 975

Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit is an adapter between EIF4E and FMR1. Promotes the translation repression activity of FMR1 in brain probably by mediating its association with EIF4E and mRNA (By similarity). Regulates formation of membrane ruffles and lamellipodia. Plays a role in axon outgrowth. Binds to F-actin but not to RNA. Part of the WAVE complex that regulates actin filament reorganization via its interaction with the Arp2/3 complex. Actin remodeling activity is regulated by RAC1. Regulator of epithelial morphogenesis. May act as an invasion suppressor in cancers.

Homo sapiens (taxid: 9606)

>sp|Q90YM8|CYFP1_DANRE Cytoplasmic FMR1-interacting protein 1 homolog OS=Danio rerio GN=cyfip1 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 4   FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
           +  FVG  H +A+CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR
Sbjct: 905 YRNFVGPPHIKAICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPR 964

Query: 64  YDYGSPGVLGY 74
           ++YGSPG+L +
Sbjct: 965 HEYGSPGILEF 975

Involved in formation of membrane ruffles and lamellipodia protrusions and in axon outgrowth. Binds to F-actin but not to RNA.

Danio rerio (taxid: 7955)

>sp|Q5SQX6|CYFP2_MOUSE Cytoplasmic FMR1-interacting protein 2 OS=Mus musculus GN=Cyfip2 PE=1 SV=2

 Score =  110 bits (275), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 4   FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
           +  FVG  HF+ +CRLLGYQGIAVVMEELLKIV SL+QG++LQ+ KTL++ MPK C+LPR
Sbjct: 904 YRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPR 963

Query: 64  YDYGSPGVLGY 74
           ++YGSPG+L +
Sbjct: 964 HEYGSPGILEF 974

Involved in T-cell adhesion and p53-dependent induction of apoptosis (By similarity). Does not bind RNA.

Mus musculus (taxid: 10090)

>sp|Q5R414|CYFP2_PONAB Cytoplasmic FMR1-interacting protein 2 OS=Pongo abelii GN=CYFIP2 PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 4   FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
           +  FVG  HF+ +CRLLGYQGIAVVMEELLKIV SL+QG++LQ+ KTL++ MPK C+LPR
Sbjct: 904 YRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVESLLQGTILQYVKTLIEVMPKICRLPR 963

Query: 64  YDYGSPGVLGY 74
           ++YGSPG+L +
Sbjct: 964 HEYGSPGILEF 974

Involved in T-cell adhesion and p53-dependent induction of apoptosis. Does not bind RNA.

Pongo abelii (taxid: 9601)

>sp|Q96F07|CYFP2_HUMAN Cytoplasmic FMR1-interacting protein 2 OS=Homo sapiens GN=CYFIP2 PE=1 SV=2

 Score =  110 bits (275), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 4   FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
           +  FVG  HF+ +CRLLGYQGIAVVMEELLKIV SL+QG++LQ+ KTL++ MPK C+LPR
Sbjct: 929 YRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPR 988

Query: 64  YDYGSPGVLGY 74
           ++YGSPG+L +
Sbjct: 989 HEYGSPGILEF 999

Involved in T-cell adhesion and p53/TP53-dependent induction of apoptosis. Does not bind RNA.

Homo sapiens (taxid: 9606)

>sp|Q6GQD1|CYFP2_XENLA Cytoplasmic FMR1-interacting protein 2 OS=Xenopus laevis GN=cyfip2 PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 4   FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
           +  FVG  HF+ +CRLLGYQGIAVVMEELLKIV SL+QG++LQ+ KTL++ MPK C+LPR
Sbjct: 904 YRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTVLQYVKTLIEVMPKICRLPR 963

Query: 64  YDYGSPGVLGY 74
           ++YGSPG+L +
Sbjct: 964 HEYGSPGILEF 974

Involved in T-cell adhesion and p53-dependent induction of apoptosis. Does not bind RNA.

Xenopus laevis (taxid: 8355)

>sp|O44518|CYFIP_CAEEL Cytoplasmic FMR1-interacting protein homolog OS=Caenorhabditis elegans GN=gex-2 PE=1 SV=4

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 8   VGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYG 67
           +G  H +A+ RLL YQGIAV+++ELLK+   L+   + +  + + + MPK CKLPR DYG
Sbjct: 912 IGTQHLKAITRLLHYQGIAVILDELLKMTNRLLNDKIRRHVRNVFNMMPKVCKLPRSDYG 971

Query: 68  SPGVLGY 74
           S  +L Y
Sbjct: 972 SNALLQY 978

Required for initial steps of body morphogenesis.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
156545874	1315	PREDICTED: cytoplasmic FMR1-interacting	0.96	0.054	0.875	2e-31
242011745	1288	conserved hypothetical protein [Pediculu	0.96	0.055	0.861	1e-30
193610539	1285	PREDICTED: cytoplasmic FMR1-interacting	0.96	0.056	0.833	3e-30
307201321	1282	Cytoplasmic FMR1-interacting protein [Ha	0.96	0.056	0.833	7e-30
383860827	1292	PREDICTED: cytoplasmic FMR1-interacting	0.96	0.055	0.847	1e-29
380020009	1292	PREDICTED: LOW QUALITY PROTEIN: cytoplas	0.96	0.055	0.847	1e-29
340715094	1292	PREDICTED: cytoplasmic FMR1-interacting	0.96	0.055	0.847	1e-29
110772336	1292	PREDICTED: cytoplasmic FMR1-interacting	0.96	0.055	0.847	1e-29
350414685	1292	PREDICTED: cytoplasmic FMR1-interacting	0.96	0.055	0.847	1e-29
383860829	1269	PREDICTED: cytoplasmic FMR1-interacting	0.96	0.056	0.847	1e-29

>gi|156545874|ref|XP_001606532.1| PREDICTED: cytoplasmic FMR1-interacting protein-like [Nasonia vitripennis]

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/72 (87%), Positives = 67/72 (93%)

Query: 3    KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
            ++ GFVG YHFR MC+LLGYQGIAVVMEELLKIV SLIQGSLLQFTKTLM+AMPK CKLP
Sbjct: 950  QYSGFVGPYHFRTMCKLLGYQGIAVVMEELLKIVKSLIQGSLLQFTKTLMEAMPKVCKLP 1009

Query: 63   RYDYGSPGVLGY 74
            RYDYGSPGVLGY
Sbjct: 1010 RYDYGSPGVLGY 1021

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011745|ref|XP_002426607.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510756|gb|EEB13869.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/72 (86%), Positives = 66/72 (91%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
           ++ GFVG+YHFR MCRLLGYQGIAVVMEELLKIV  LIQG+LLQFTKTLMDAMPK CKLP
Sbjct: 924 QYTGFVGSYHFRMMCRLLGYQGIAVVMEELLKIVKLLIQGNLLQFTKTLMDAMPKICKLP 983

Query: 63  RYDYGSPGVLGY 74
           RYDYGSPGVL Y
Sbjct: 984 RYDYGSPGVLQY 995

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193610539|ref|XP_001949649.1| PREDICTED: cytoplasmic FMR1-interacting protein-like [Acyrthosiphon pisum]

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/72 (83%), Positives = 67/72 (93%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
           ++ GFVGA HFR MC++LGYQGIAVVMEELLKIV SLIQG+LLQF KTLM+AMP+QCKLP
Sbjct: 925 QYTGFVGAPHFRTMCKMLGYQGIAVVMEELLKIVKSLIQGNLLQFAKTLMEAMPRQCKLP 984

Query: 63  RYDYGSPGVLGY 74
           RYDYGSPGVLGY
Sbjct: 985 RYDYGSPGVLGY 996

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201321|gb|EFN81168.1| Cytoplasmic FMR1-interacting protein [Harpegnathos saltator]

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 60/72 (83%), Positives = 66/72 (91%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
           ++ GFVG YHFR +C+LLGYQGIAVVMEELLKIV +LIQGSL QFTKTLM+AMPK CKLP
Sbjct: 915 QYSGFVGPYHFRTICKLLGYQGIAVVMEELLKIVKTLIQGSLHQFTKTLMEAMPKVCKLP 974

Query: 63  RYDYGSPGVLGY 74
           RYDYGSPGVLGY
Sbjct: 975 RYDYGSPGVLGY 986

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860827|ref|XP_003705890.1| PREDICTED: cytoplasmic FMR1-interacting protein-like isoform 1 [Megachile rotundata]

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/72 (84%), Positives = 65/72 (90%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
           ++ GFVG  HFR MC+LLGYQGIAVVMEELLKIV SLIQGSL QFTKTLM+AMPK CKLP
Sbjct: 926 QYSGFVGPQHFRTMCKLLGYQGIAVVMEELLKIVKSLIQGSLHQFTKTLMEAMPKVCKLP 985

Query: 63  RYDYGSPGVLGY 74
           RYDYGSPGVLGY
Sbjct: 986 RYDYGSPGVLGY 997

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020009|ref|XP_003693891.1| PREDICTED: LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein-like [Apis florea]

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/72 (84%), Positives = 65/72 (90%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
           ++ GFVG  HFR MC+LLGYQGIAVVMEELLKIV SLIQGSL QFTKTLM+AMPK CKLP
Sbjct: 926 QYSGFVGPQHFRTMCKLLGYQGIAVVMEELLKIVKSLIQGSLHQFTKTLMEAMPKVCKLP 985

Query: 63  RYDYGSPGVLGY 74
           RYDYGSPGVLGY
Sbjct: 986 RYDYGSPGVLGY 997

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715094|ref|XP_003396055.1| PREDICTED: cytoplasmic FMR1-interacting protein-like [Bombus terrestris]

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/72 (84%), Positives = 65/72 (90%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
           ++ GFVG  HFR MC+LLGYQGIAVVMEELLKIV SLIQGSL QFTKTLM+AMPK CKLP
Sbjct: 926 QYSGFVGPQHFRTMCKLLGYQGIAVVMEELLKIVKSLIQGSLHQFTKTLMEAMPKVCKLP 985

Query: 63  RYDYGSPGVLGY 74
           RYDYGSPGVLGY
Sbjct: 986 RYDYGSPGVLGY 997

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110772336|ref|XP_395632.3| PREDICTED: cytoplasmic FMR1-interacting protein isoform 1 [Apis mellifera]

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/72 (84%), Positives = 65/72 (90%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
           ++ GFVG  HFR MC+LLGYQGIAVVMEELLKIV SLIQGSL QFTKTLM+AMPK CKLP
Sbjct: 926 QYSGFVGPQHFRTMCKLLGYQGIAVVMEELLKIVKSLIQGSLHQFTKTLMEAMPKVCKLP 985

Query: 63  RYDYGSPGVLGY 74
           RYDYGSPGVLGY
Sbjct: 986 RYDYGSPGVLGY 997

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414685|ref|XP_003490387.1| PREDICTED: cytoplasmic FMR1-interacting protein-like [Bombus impatiens]

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/72 (84%), Positives = 65/72 (90%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
           ++ GFVG  HFR MC+LLGYQGIAVVMEELLKIV SLIQGSL QFTKTLM+AMPK CKLP
Sbjct: 926 QYSGFVGPQHFRTMCKLLGYQGIAVVMEELLKIVKSLIQGSLHQFTKTLMEAMPKVCKLP 985

Query: 63  RYDYGSPGVLGY 74
           RYDYGSPGVLGY
Sbjct: 986 RYDYGSPGVLGY 997

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860829|ref|XP_003705891.1| PREDICTED: cytoplasmic FMR1-interacting protein-like isoform 2 [Megachile rotundata]

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/72 (84%), Positives = 65/72 (90%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
           ++ GFVG  HFR MC+LLGYQGIAVVMEELLKIV SLIQGSL QFTKTLM+AMPK CKLP
Sbjct: 903 QYSGFVGPQHFRTMCKLLGYQGIAVVMEELLKIVKSLIQGSLHQFTKTLMEAMPKVCKLP 962

Query: 63  RYDYGSPGVLGY 74
           RYDYGSPGVLGY
Sbjct: 963 RYDYGSPGVLGY 974

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
FB|FBgn0038320	1291	Sra-1 "specifically Rac1-assoc	0.96	0.055	0.767	5.5e-23
UNIPROTKB|Q299G2	1291	Sra-1 "Cytoplasmic FMR1-intera	0.96	0.055	0.767	5.5e-23
UNIPROTKB|E1BW56	1254	CYFIP1 "Uncharacterized protei	0.946	0.056	0.661	1.3e-21
UNIPROTKB|E1BN47	1285	E1BN47 "Uncharacterized protei	0.946	0.055	0.661	1.3e-21
UNIPROTKB|Q7L576	1253	CYFIP1 "Cytoplasmic FMR1-inter	0.946	0.056	0.661	1.6e-21
MGI|MGI:1338801	1253	Cyfip1 "cytoplasmic FMR1 inter	0.946	0.056	0.661	1.6e-21
RGD|1310332	1253	Cyfip1 "cytoplasmic FMR1 inter	0.946	0.056	0.661	1.6e-21
ZFIN|ZDB-GENE-030131-8557	1257	cyfip1 "cytoplasmic FMR1 inter	0.946	0.056	0.661	2.1e-21
UNIPROTKB|E7EVF4	1253	CYFIP2 "Cytoplasmic FMR1-inter	0.946	0.056	0.661	2.7e-21
UNIPROTKB|Q5R414	1253	CYFIP2 "Cytoplasmic FMR1-inter	0.946	0.056	0.661	2.7e-21

FB|FBgn0038320 Sra-1 "specifically Rac1-associated protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 279 (103.3 bits), Expect = 5.5e-23, P = 5.5e-23
 Identities = 56/73 (76%), Positives = 62/73 (84%)

Query:     3 KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLK-IVTSLIQGSLLQFTKTLMDAMPKQCKL 61
             ++ GFVG+ HF AMCRLLGYQGIAVVM+ +LK IV  LIQGSLLQFTKTLM AMPK CKL
Sbjct:   925 QYTGFVGSPHFHAMCRLLGYQGIAVVMDIILKDIVKPLIQGSLLQFTKTLMIAMPKSCKL 984

Query:    62 PRYDYGSPGVLGY 74
             PR +YGSPGVL Y
Sbjct:   985 PRCEYGSPGVLSY 997

GO:0017048 "Rho GTPase binding" evidence=NAS

GO:0007411 "axon guidance" evidence=IMP

GO:0050807 "regulation of synapse organization" evidence=IMP

GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP

GO:0030031 "cell projection assembly" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0045202 "synapse" evidence=ISS

GO:0031209 "SCAR complex" evidence=IDA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0045177 "apical part of cell" evidence=IDA

UNIPROTKB|Q299G2 Sra-1 "Cytoplasmic FMR1-interacting protein" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 279 (103.3 bits), Expect = 5.5e-23, P = 5.5e-23
 Identities = 56/73 (76%), Positives = 62/73 (84%)

Query:     3 KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLK-IVTSLIQGSLLQFTKTLMDAMPKQCKL 61
             ++ GFVG+ HF AMCRLLGYQGIAVVM+ +LK IV  LIQGSLLQFTKTLM AMPK CKL
Sbjct:   925 QYTGFVGSPHFHAMCRLLGYQGIAVVMDIILKDIVKPLIQGSLLQFTKTLMIAMPKSCKL 984

Query:    62 PRYDYGSPGVLGY 74
             PR +YGSPGVL Y
Sbjct:   985 PRCEYGSPGVLSY 997

GO:0007411 "axon guidance" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=ISS

GO:0022416 "chaeta development" evidence=ISS

GO:0030031 "cell projection assembly" evidence=ISS

GO:0030866 "cortical actin cytoskeleton organization" evidence=ISS

GO:0031209 "SCAR complex" evidence=ISS

GO:0050807 "regulation of synapse organization" evidence=ISS

UNIPROTKB|E1BW56 CYFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 266 (98.7 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query:     4 FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
             +  FVG  HF+ +CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR
Sbjct:   906 YRNFVGPPHFKVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPR 965

Query:    64 YDYGSPGVLGY 74
             ++YGSPG+L +
Sbjct:   966 HEYGSPGILEF 976

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048675 "axon extension" evidence=IEA

UNIPROTKB|E1BN47 E1BN47 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query:     4 FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
             +  FVG  HF+ +CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR
Sbjct:   936 YRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKVCRLPR 995

Query:    64 YDYGSPGVLGY 74
             ++YGSPG+L +
Sbjct:   996 HEYGSPGILEF 1006

GO:0048675 "axon extension" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

UNIPROTKB|Q7L576 CYFIP1 "Cytoplasmic FMR1-interacting protein 1" [Homo sapiens (taxid:9606)]

 Score = 265 (98.3 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query:     4 FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
             +  FVG  HF+ +CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR
Sbjct:   905 YRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPR 964

Query:    64 YDYGSPGVLGY 74
             ++YGSPG+L +
Sbjct:   965 HEYGSPGILEF 975

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0030027 "lamellipodium" evidence=ISS

GO:0030032 "lamellipodium assembly" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0043005 "neuron projection" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0001726 "ruffle" evidence=ISS

GO:0031529 "ruffle organization" evidence=ISS

GO:0048365 "Rac GTPase binding" evidence=ISS

GO:0048675 "axon extension" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005845 "mRNA cap binding complex" evidence=ISS

MGI|MGI:1338801 Cyfip1 "cytoplasmic FMR1 interacting protein 1" [Mus musculus (taxid:10090)]

 Score = 265 (98.3 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query:     4 FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
             +  FVG  HF+ +CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR
Sbjct:   905 YRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPR 964

Query:    64 YDYGSPGVLGY 74
             ++YGSPG+L +
Sbjct:   965 HEYGSPGILEF 975

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005522 "profilin binding" evidence=TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0030027 "lamellipodium" evidence=IDA

GO:0030032 "lamellipodium assembly" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=IDA

GO:0045202 "synapse" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0048675 "axon extension" evidence=ISO

RGD|1310332 Cyfip1 "cytoplasmic FMR1 interacting protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query:     4 FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
             +  FVG  HF+ +CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR
Sbjct:   905 YRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPR 964

Query:    64 YDYGSPGVLGY 74
             ++YGSPG+L +
Sbjct:   965 HEYGSPGILEF 975

GO:0005845 "mRNA cap binding complex" evidence=IEA;ISO

GO:0030027 "lamellipodium" evidence=IEA;ISO

GO:0030032 "lamellipodium assembly" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0048675 "axon extension" evidence=IEA;ISO

ZFIN|ZDB-GENE-030131-8557 cyfip1 "cytoplasmic FMR1 interacting protein 1" [Danio rerio (taxid:7955)]

 Score = 264 (98.0 bits), Expect = 2.1e-21, P = 2.1e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query:     4 FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
             +  FVG  H +A+CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR
Sbjct:   909 YRNFVGPPHIKAICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPR 968

Query:    64 YDYGSPGVLGY 74
             ++YGSPG+L +
Sbjct:   969 HEYGSPGILEF 979

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0048675 "axon extension" evidence=ISS

GO:0030032 "lamellipodium assembly" evidence=ISS

GO:0031529 "ruffle organization" evidence=ISS

GO:0003779 "actin binding" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|E7EVF4 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Homo sapiens (taxid:9606)]

 Score = 263 (97.6 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query:     4 FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
             +  FVG  HF+ +CRLLGYQGIAVVMEELLKIV SL+QG++LQ+ KTL++ MPK C+LPR
Sbjct:   904 YRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPR 963

Query:    64 YDYGSPGVLGY 74
             ++YGSPG+L +
Sbjct:   964 HEYGSPGILEF 974

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5R414 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Pongo abelii (taxid:9601)]

 Score = 263 (97.6 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query:     4 FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
             +  FVG  HF+ +CRLLGYQGIAVVMEELLKIV SL+QG++LQ+ KTL++ MPK C+LPR
Sbjct:   904 YRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVESLLQGTILQYVKTLIEVMPKICRLPR 963

Query:    64 YDYGSPGVLGY 74
             ++YGSPG+L +
Sbjct:   964 HEYGSPGILEF 974

GO:0005737 "cytoplasm" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0016337 "cell-cell adhesion" evidence=ISS

GO:0043005 "neuron projection" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q90YM8	CYFP1_DANRE	No assigned EC number	0.6619	0.9466	0.0566	yes	N/A
Q7L576	CYFP1_HUMAN	No assigned EC number	0.6619	0.9466	0.0566	yes	N/A
Q299G2	CYFIP_DROPS	No assigned EC number	0.7671	0.96	0.0557	yes	N/A
Q9VF87	CYFIP_DROME	No assigned EC number	0.7671	0.96	0.0557	yes	N/A
Q7TMB8	CYFP1_MOUSE	No assigned EC number	0.6619	0.9466	0.0566	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
pfam05994	815	pfam05994, FragX_IP, Cytoplasmic Fragile-X interac	2e-25
PLN03099	1232	PLN03099, PIR, Protein PIR; Provisional	0.002

>gnl|CDD|218846 pfam05994, FragX_IP, Cytoplasmic Fragile-X interacting family

 Score = 96.7 bits (241), Expect = 2e-25
 Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 6   GFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYD 65
            F+G  HFRA+CRLLGY GIAV+ +ELLK    L++ ++L F K  M  MPK  +LP  D
Sbjct: 515 NFIGPEHFRALCRLLGYGGIAVLSQELLK----LLEEAILPFVKIYMSVMPKITRLPPLD 570

Query: 66  YGSPGVLGY 74
           YGS GV  Y
Sbjct: 571 YGSHGVYDY 579

CYFIP1/2 (Cytoplasmic fragile X mental retardation interacting protein) like proteins for a highly conserved protein family. The function of CYFIPs is unclear, but CYFIP interaction with fragile X mental retardation interacting protein (FMRP) involves the domain of FMRP which also mediating homo- and heteromerization. Length = 815

>gnl|CDD|215574 PLN03099, PIR, Protein PIR; Provisional

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 4   FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
              F G  H  A+ +LLG + +  ++  LL  ++  I   L    + L +AMPK   LP 
Sbjct: 863 HSKFFGLPHMFAIVKLLGSRSLPWLIRALLDHLSQKITT-LEPMIEDLREAMPKAIGLPS 921

Query: 64  YDYGSPGVL 72
           +D G  G +
Sbjct: 922 FDGGVAGCM 930

Length = 1232

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
PLN03099	1232	PIR Protein PIR; Provisional	99.97
KOG3534|consensus	1253		99.96
PF05994	820	FragX_IP: Cytoplasmic Fragile-X interacting family	99.92
PF02186	65	TFIIE_beta: TFIIE beta subunit core domain; InterP	92.54
cd07977	75	TFIIE_beta_winged_helix TFIIE_beta_winged_helix do	82.83
PF08352	64	oligo_HPY: Oligopeptide/dipeptide transporter, C-t	81.57

>PLN03099 PIR Protein PIR; Provisional

Probab=99.97  E-value=2.7e-31  Score=225.91  Aligned_cols=72  Identities=29%  Similarity=0.469  Sum_probs=70.7

Q ss_pred             ccccCCcchhHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCccCCCCCcccCCcccccc
Q psy7099           2 VKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGY   74 (75)
Q Consensus         2 ~ly~gFvG~pH~~aivRLLGy~gia~vi~elLk~v~~~i~~~l~~yv~~l~~~mPk~~kLP~~dyGs~G~~~y   74 (75)
                      ++|+||||+|||+|||||||||||||||+||||+++++|+ +|.|||++|+++|||+||||++||||+||++|
T Consensus       861 ~ly~~f~G~pH~~ai~rLlG~~~la~vi~~lL~~i~~~i~-~l~~~v~~L~~~mPk~~~Lp~~dyG~~g~~~~  932 (1232)
T PLN03099        861 ELHSKFFGLPHMFAIVKLLGSRSLPWLIRALLDHLSQKIT-TLEPMIEDLREAMPKAIGLPSFDGGVAGCMKI  932 (1232)
T ss_pred             HHHhcccCcHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCccccCCCccccCchHHHHH
Confidence            5899999999999999999999999999999999999999 89999999999999999999999999999987

>KOG3534|consensus

Probab=99.96  E-value=1.9e-29  Score=210.11  Aligned_cols=73  Identities=68%  Similarity=1.213  Sum_probs=71.3

Q ss_pred             ccccCCcchhHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCccCCCCCcccCCcccccc
Q psy7099           2 VKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGY   74 (75)
Q Consensus         2 ~ly~gFvG~pH~~aivRLLGy~gia~vi~elLk~v~~~i~~~l~~yv~~l~~~mPk~~kLP~~dyGs~G~~~y   74 (75)
                      +.|++|||.|||+||||||||||||||++||||++++++|++|.+||+++++.|||+|||||.||||+|+++|
T Consensus       898 ~~Y~~fvG~pHf~aicRLLgYQGIAVvmdelLKivk~Llqg~ilq~vktl~~~MPKiCkLPR~eYGSpgiL~y  970 (1253)
T KOG3534|consen  898 GSYRNFVGPPHFKAICRLLGYQGIAVVMDELLKIVKSLLQGTILQYVKTLMEVMPKICKLPRHEYGSPGILEY  970 (1253)
T ss_pred             HHHhcCCCcHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCCccccCChHHHHH
Confidence            3589999999999999999999999999999999999999999999999999999999999999999999987

>PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family

Probab=99.92  E-value=4e-26  Score=189.59  Aligned_cols=69  Identities=59%  Similarity=1.091  Sum_probs=57.9

Q ss_pred             ccccCCcchhHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCccCCCCCcccCCcccccc
Q psy7099           2 VKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGY   74 (75)
Q Consensus         2 ~ly~gFvG~pH~~aivRLLGy~gia~vi~elLk~v~~~i~~~l~~yv~~l~~~mPk~~kLP~~dyGs~G~~~y   74 (75)
                      ++|++|||+|||+||||||||+|||||++||++    +|+++++|||++++++|||+||||++|||++|||+|
T Consensus       511 ~~~~~FvG~pH~~ai~rLLg~~~la~li~ell~----~i~~~~~~~V~~l~~~mPk~~~lP~~dygs~g~~~~  579 (820)
T PF05994_consen  511 SLYRGFVGVPHFKAIVRLLGYRGLAVLIEELLK----LIQNKIEPYVKALMEAMPKSCKLPPFDYGSAGVYDY  579 (820)
T ss_dssp             GGGGS-B-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHTHHHHHHHHHHHHS-SB-----GGG-HHHHHHH
T ss_pred             HHhCCccChHHHHHHHHHhCCCcHHHHHHHHHH----HHHHHHHHHHHHHHHhCCccccCCCccCCCHHHHHH
Confidence            589999999999999999999999999999999    888889999999999999999999999999999987

Absence of FMRP is responsible for pathologic manifestations in Fragile X Syndrome, the most frequent cause of inherited mental retardation []. FMRP is an RNA-binding protein that may have a role in local protein translation at neuronal dendrites and in dendritic spine maturation []. CYFIP1 and CYFIP2, which share a high level of sequence identity, have recently been identified as cytoplasmic FMRP interacting proteins []. CYFIP2 interacts with FMRP-related proteins FXR1P/2P, while CYFIP1 interacts exclusively with FMRP. The FMRP-CYFIP interaction involves the domain of FMRP that also mediates homo- and heteromerisation, suggesting competition between the various interaction partners. CYFIP1 also interacts with the small GTPase Rac1 implicated in development and maintenance of neuronal structures. CYFIP1/2 are both present in synaptosomal extracts []. PIR121 (121F-specific p53 inducible RNA) is another functionally uncharacterised member of this family. The PIR121 gene maps to human chromosome 5q34, a region frequently translocated in acute myeloid leukaemia but not known to be amplified or deleted in solid tumours. Interaction between PIR121 and FMRP has been demonstrated, and hence PIR121 has also been termed CYFIP2 (Cytoplasmic FMRP Interacting Protein 2) [, ]. Shyc (Selective HYbridizing Clone) is a cytoplasmic protein of unknown function, expressed in the developing and embryonic nervous system. The protein has also been designated CYFIP1 due to the high sequence identity (98.7%) to its human orthologue. The CYFIP orthologues in Caenorhabditis elegans and Drosophila melanogaster (Fruit fly) share about 51% and 67% sequence identity with the human proteins, respectively []. The high level of conservation manifest throughout the entire CYFIP sequence between various orthologues suggests a number of functionally/structurally important domains. ; PDB: 3P8C_A.

>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH

Probab=92.54  E-value=0.029  Score=34.28  Aligned_cols=54  Identities=19%  Similarity=0.393  Sum_probs=36.2

Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCccCCCCCcccCCcc-ccccC
Q psy7099          12 HFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPG-VLGYR   75 (75)
Q Consensus        12 H~~aivRLLGy~gia~vi~elLk~v~~~i~~~l~~yv~~l~~~mPk~~kLP~~dyGs~G-~~~y~   75 (75)
                      -++.+|..+-.++-|+-++|+++..+--+...+.++.+          +.|+..|-..| .|+|+
T Consensus         6 ql~~~VeymK~r~~Plt~~eI~d~l~~d~~~~~~~~Lk----------~npKI~~d~~~~~f~fk   60 (65)
T PF02186_consen    6 QLAKAVEYMKKRDHPLTLEEILDYLSLDIGKKLKQWLK----------NNPKIEYDPDGNTFSFK   60 (65)
T ss_dssp             HHHHHHHHHHHH-S-B-HHHHHHHHTSSS-HHHHHHHH----------H-TTEEEE-TT-CEEE-
T ss_pred             HHHHHHHHHHhcCCCcCHHHHHHHHcCCCCHHHHHHHH----------cCCCEEEecCCCEEEec
Confidence            46678888889999999999999988556555555554          66778887666 88774

In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.

>cd07977 TFIIE_beta_winged_helix TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

Probab=82.83  E-value=1.3  Score=27.45  Aligned_cols=58  Identities=14%  Similarity=0.292  Sum_probs=39.8

Q ss_pred             HHHHHHHHhcccc-HHHHHHHHHHHHH-HHHHhhHHHHHHHHHHhCCccCCCCCcccCCccccccC
Q psy7099          12 HFRAMCRLLGYQG-IAVVMEELLKIVT-SLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYR   75 (75)
Q Consensus        12 H~~aivRLLGy~g-ia~vi~elLk~v~-~~i~~~l~~yv~~l~~~mPk~~kLP~~dyGs~G~~~y~   75 (75)
                      -+.-+|.-+-.++ -|+-++|+++..+ --+...++++.++..  .+   ..|++|-. .|.|.|+
T Consensus        10 ~l~~aV~ymK~r~~~Plt~~EIl~~ls~~d~~~~~~~~L~~~~--~~---~n~~~~~~-~~tf~fk   69 (75)
T cd07977          10 QLAKIVDYMKKRHQHPLTLDEILDYLSLLDIGPKLKEWLKSEA--LV---NNPKIDPK-DGTFSFK   69 (75)
T ss_pred             hHHHHHHHHHhcCCCCccHHHHHHHHhccCccHHHHHHHHhhh--hc---cCceeccC-CCEEEec
Confidence            3566788888899 9999999999988 555555555554221  11   26677754 6788875

Transcription Factor IIE (TFIIE) beta winged-helix (or forkhead) domain is located at the central core region of TFIIE beta. The winged-helix is a form of helix-turn-helix (HTH) domain which typically binds DNA with the 3rd helix. The winged-helix domain is distinguished by the presence of a C-terminal beta-strand hairpin unit (the wing) that packs against the cleft of the tri-helical core. Although most winged-helix domains are multi-member families, TFIIE beta winged-helix domain is typically found as a single orthologous group. TFIIE is one of the six eukaryotic general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH) that are required for transcription initiation of protein-coding genes. TFIIE is a heterotetramer consisting of two copies each of alpha and beta subunits. TFIIE beta contains several functional

>PF08352 oligo_HPY: Oligopeptide/dipeptide transporter, C-terminal region; InterPro: IPR013563 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=81.57  E-value=1.2  Score=25.60  Aligned_cols=23  Identities=17%  Similarity=0.419  Sum_probs=20.1

Q ss_pred             HHHHHHhhHHHHHHHHHHhCCcc
Q psy7099          36 VTSLIQGSLLQFTKTLMDAMPKQ   58 (75)
Q Consensus        36 v~~~i~~~l~~yv~~l~~~mPk~   58 (75)
                      ++.++++...||++.|+++.|..
T Consensus         6 ~~~i~~~P~HPYT~~Ll~a~p~~   28 (64)
T PF08352_consen    6 TEDIFDNPRHPYTRALLAAVPSI   28 (64)
T ss_pred             HHHHHHCccCHHHHHHHHcCcch
Confidence            56788999999999999999854

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry features a region found towards the C terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (IPR003439 from INTERPRO). All characterised members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the haem precursor delta-aminolevulinic acid. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0015833 peptide transport

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
3p8c_A	1253	Structure And Control Of The Actin Regulatory Wave		1e-25

>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex Length = 1253

Iteration: 1
 Score =  110 bits (276), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)
Query: 4   FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
           +  FVG  HF+ +CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR
Sbjct: 905 YRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPR 964
Query: 64  YDYGSPGVLGY 74
           ++YGSPG+L +
Sbjct: 965 HEYGSPGILEF 975

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
3p8c_A	1253	Cytoplasmic FMR1-interacting protein 1; actin poly	1e-27

>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1253

 Score =  102 bits (255), Expect = 1e-27
 Identities = 47/72 (65%), Positives = 61/72 (84%)

Query: 3   KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
            +  FVG  HF+ +CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LP
Sbjct: 904 SYRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLP 963

Query: 63  RYDYGSPGVLGY 74
           R++YGSPG+L +
Sbjct: 964 RHEYGSPGILEF 975

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
3p8c_A	1253	Cytoplasmic FMR1-interacting protein 1; actin poly	99.95

>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}

Probab=99.95  E-value=6.7e-29  Score=211.22  Aligned_cols=73  Identities=64%  Similarity=1.183  Sum_probs=71.9

Q ss_pred             ccccCCcchhHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCccCCCCCcccCCcccccc
Q psy7099           2 VKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGY   74 (75)
Q Consensus         2 ~ly~gFvG~pH~~aivRLLGy~gia~vi~elLk~v~~~i~~~l~~yv~~l~~~mPk~~kLP~~dyGs~G~~~y   74 (75)
                      ++|++|||.|||+||||||||+||||||+||||+++++|+++++|||++++++|||+||||++||||+||++|
T Consensus       903 ~~~~~FvG~~H~~ai~rLlg~~~l~~vi~ell~~~~~~i~~~~~~yv~~l~~~mPk~~klP~~dyGs~G~~~~  975 (1253)
T 3p8c_A          903 GSYRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEF  975 (1253)
T ss_dssp             GGGGSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSCSBCCCCCGGGCHHHHHHH
T ss_pred             hhcccccChHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhCCCCccCCchHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00