Psyllid ID: psy711

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530--

MELLASKAGQESRSSKSKKDDKMAPFQTAVTLDDNRDGEVIEVQILPQDENWGENTTAVTGNTSEQSGSLEDLALWPGGNQETGLLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSKKNHSHSSFKFYDVDGGFNNSTLQSGGECNRSVSNVHPRRRDSSHNERFYEEHDYERRVKKRRARLITATEEAFTHIKRTGHQEPVVGGVPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTVFQLLQNEVSLICSVHALPHFNISEEVIHPKSNRFVLRMSSETSV

cccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEcccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccEEHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccEEccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccccEEEEEccccccccccccEEEEEEccEEEEEEEEcccEEEEEEEEEcccccEEEEEccccccc

cccEEccccccccccccccccccccccccEEccccccccEEEEEEcccccccccccEEEEcccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHcHHHHcHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccEEcHcHHHHHHHHHHHHHHHHHHcccccccHHcccHcHHHHccccccEEEEEccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccEEEEEEccccccccccccEEEEEEccEEEEEEEEEccEEEEEEEEEcccccEEEEEEcccccc

MELlaskagqesrsskskkddkmapfqtavtlddnrdgevievqilpqdenwgenttavtgntseqsgsledlalwpggnqetGLLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVflrqpratmprIFIFRAIVVVFLFVCTIAYWLFFIVQMTEgaratvtgedVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHlqpafyikvtrspdgdsksyaIGQLSIQRAAVWVLQKYYTEFSiynpyleklpvskskknhshssfkfydvdggfnnstlqsggecnrsvsnvhprrrdsshnerfyeehDYERRVKKRRARLITATEEAFTHIkrtghqepvvggvpmdsyEAAQAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLshdlspraflepflipapvlqnekEQKEIQSWSLICDElltrplqngtvFQLLQNEVSLICSvhalphfniseevihpksnrFVLRMSSETSV

mellaskagqesrsskskkddkmapfqtavtlddnrdgEVIEVqilpqdenwgeNTTAVTGNTSEQSGSLEDLALWPGGNQETGLLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSKKNHSHSSFKFYDVDGGFNNSTLqsggecnrsvsnvhprrrdsshnerfyeehdyerrvkKRRARLITATeeafthikrtghqepvVGGVPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTVFQLLQNEVSLICSVHALPHFNiseevihpksnrfvlrmssetsv

MELLASKAGQEsrsskskkddkMAPFQTAVTLDDNRDGEVIEVQILPQDENWGENTTAVTGNTSEQSGSLEDLALWPGGNQETGLLFLCHRYIGSVFTGILSVISFlspllmlalpklGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVskskknhshssfkfYDVDGGFNNSTLQSGGECNRSVSNVHPRRRDSSHNERFYEEHDYERRVKKRRARLITATEEAFTHIKRTGHQEPVVGGVPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTVFQLLQNEVSLICSVHALPHFNISEEVIHPKSNRFVLRMSSETSV

**************************************EVIEVQILP************************DLALWPGGNQETGLLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKL**************KFYDVD************************************************ARLITATEEAFTHIKRTGHQEPVVGGVPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTVFQLLQNEVSLICSVHALPHFNISEEVIHP***************

*******************************************QILPQDENWGENTTAVTGNTSEQSG*LE****WP*GNQETGLLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPY********************************************************RFYEEHDYERRVKKRRARLITATEEAFTHIK*********************AVFPSLARALQKYLRV***********ILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTVFQLLQNEVSLICSVHALPHFNISEEVIHPKSNRFVLRMSS****

***********************APFQTAVTLDDNRDGEVIEVQILPQDENWGENTTAVTGNTSEQSGSLEDLALWPGGNQETGLLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPV********HSSFKFYDVDGGFNNSTLQ*********************NERFYEEHDYERRVKKRRARLITATEEAFTHIKRTGHQEPVVGGVPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTVFQLLQNEVSLICSVHALPHFNISEEVIHPKSNRFVLRMSSETSV

****************************AVTL***RDGEVIEVQILPQDENWGENTTAVTGNTSEQ*GSLEDLALWPGGNQETGLLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKS*****HSSFK*Y*VDG***************************SHNERFYEEHDYERRVKKRRARLITATEEAFTHIKRTGHQE****GVPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTVFQLLQNEVSLICSVHALPHFNISEEVIHPKSNRFVLRMS*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		532	2.2.26 [Sep-21-2011]
Q80Z96		526	Vang-like protein 1 OS=Mu	yes	N/A	0.857	0.866	0.458	1e-114
Q8TAA9		524	Vang-like protein 1 OS=Ho	yes	N/A	0.857	0.870	0.454	1e-113
Q90Z05		521	Vang-like protein 2-B OS=	N/A	N/A	0.783	0.800	0.452	1e-105
Q8UVJ6		526	Vang-like protein 2 OS=Da	no	N/A	0.787	0.796	0.441	1e-103
Q90X64		521	Vang-like protein 2-A OS=	N/A	N/A	0.787	0.804	0.457	1e-103
Q4VBG5		521	Vang-like protein 2 OS=Xe	yes	N/A	0.787	0.804	0.454	1e-103
P84889		521	Vang-like protein 2 OS=Ra	no	N/A	0.860	0.879	0.447	4e-92
Q91ZD4		521	Vang-like protein 2 OS=Mu	no	N/A	0.860	0.879	0.447	4e-92
Q9ULK5		521	Vang-like protein 2 OS=Ho	no	N/A	0.860	0.879	0.443	7e-91

>sp\|Q80Z96\|VANG1_MOUSE Vang-like protein 1 OS=Mus musculus GN=Vangl1 PE=1 SV=2	Back alignment and function desciption

 Score =  411 bits (1056), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/486 (45%), Positives = 314/486 (64%), Gaps = 30/486 (6%)

Query: 48  QDENWGENTTAVTGNTSEQSGSLEDLALWPGGNQETGLLFLCHRYIGSVFTGILSVISFL 107
           QD+NWGE TTA+TG TSE S S ED+A     + E  +   C RY+G      L ++ FL
Sbjct: 70  QDDNWGETTTAITG-TSEHSISQEDIAR-ISKDMEDSVGLDCKRYLGLTVASFLGLLVFL 127

Query: 108 SPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLR 167
           +P+  + LP++              +  L  CG+ C+G+L+S +FK+++L +G WA+F R
Sbjct: 128 TPIAFILLPQI------------LWREELKPCGAICEGLLISVSFKLLILLIGTWALFFR 175

Query: 168 QPRATMPRIFIFRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASS 227
           + RA +PR+F+FRA+++V +F+  ++YWLF+ V++ +             Y+ +V YA S
Sbjct: 176 KQRADVPRVFVFRALLLVLIFLFVVSYWLFYGVRILDSRDQN--------YKDIVQYAVS 227

Query: 228 FVDALLFIHYITVVLIEIRHLQPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYT 287
            VDALLFIHY+ +VL+E+R LQP F ++V RS DG+S+ Y++G LSIQRAA+ VL+ YY 
Sbjct: 228 LVDALLFIHYLAIVLLELRQLQPMFTLQVVRSTDGESRFYSLGHLSIQRAALVVLENYYK 287

Query: 288 EFSIYNPYLEKLPVSKSKKNHSHSSFKFYDVDGGFNNSTLQSGGECNRSVSNVHPRRRDS 347
           +F+IYNP L  L  SK +     +  K Y+VDG  NN+T QS      +         DS
Sbjct: 288 DFTIYNPNL--LTASKFRAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAARRR-----DS 340

Query: 348 SHNERFYEEHDYERRVKKRRARLITATEEAFTHIKRTGHQEPVVG-GVPMDSYEAAQAVF 406
           SHNE +YEE ++ERRVKKRRARL+ A EEAF HI+R   +E     G  MD  EAAQA+F
Sbjct: 341 SHNELYYEEAEHERRVKKRRARLVVAVEEAFIHIQRLQAEEQQKSPGEVMDPREAAQAIF 400

Query: 407 PSLARALQKYLRVTRQQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQK 466
           PS+ARALQKYLR TRQQ  HS+ESIL HLA C+++ ++P+AFLE +L   P LQ +K++ 
Sbjct: 401 PSMARALQKYLRTTRQQHYHSMESILQHLAFCITNSMTPKAFLERYLSAGPTLQYDKDRW 460

Query: 467 EIQSWSLICDELLTRPLQNGTVFQLLQNEVSLICSVHALPHFNISEEVIHPKSNRFVLRM 526
               W LI +E +T  L++G VF L   + SL+ +V  +P   +SEE I PKS++FVLR+
Sbjct: 461 LSTQWRLISEEAVTNGLRDGIVFVLKCLDFSLVVNVKKIPFIVLSEEFIDPKSHKFVLRL 520

Query: 527 SSETSV 532
            SETSV
Sbjct: 521 QSETSV 526

Mus musculus (taxid: 10090)

>sp\|Q8TAA9\|VANG1_HUMAN Vang-like protein 1 OS=Homo sapiens GN=VANGL1 PE=1 SV=1	Back alignment and function description

>sp\|Q90Z05\|VNG2B_XENLA Vang-like protein 2-B OS=Xenopus laevis GN=vangl2-b PE=1 SV=1	Back alignment and function description

>sp\|Q8UVJ6\|VANG2_DANRE Vang-like protein 2 OS=Danio rerio GN=vangl2 PE=1 SV=1	Back alignment and function description

>sp\|Q90X64\|VNG2A_XENLA Vang-like protein 2-A OS=Xenopus laevis GN=vangl2-a PE=1 SV=1	Back alignment and function description

>sp\|Q4VBG5\|VANG2_XENTR Vang-like protein 2 OS=Xenopus tropicalis GN=vangl2 PE=2 SV=1	Back alignment and function description

>sp\|P84889\|VANG2_RAT Vang-like protein 2 OS=Rattus norvegicus GN=Vangl2 PE=2 SV=1	Back alignment and function description

>sp\|Q91ZD4\|VANG2_MOUSE Vang-like protein 2 OS=Mus musculus GN=Vangl2 PE=1 SV=3	Back alignment and function description

>sp\|Q9ULK5\|VANG2_HUMAN Vang-like protein 2 OS=Homo sapiens GN=VANGL2 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
328724953		559	PREDICTED: vang-like protein 1-like [Acy	0.971	0.924	0.679	0.0
282403507		548	van-gogh [Tribolium castaneum]	0.968	0.939	0.68	0.0
270002841		556	van-gogh [Tribolium castaneum]	0.968	0.926	0.68	0.0
242014085		548	conserved hypothetical protein [Pediculu	0.962	0.934	0.685	0.0
157167184		562	hypothetical protein AaeL_AAEL006801 [Ae	0.977	0.925	0.617	0.0
170049282		596	van Gogh [Culex quinquefasciatus] gi\|167	0.975	0.870	0.588	0.0
158300293		588	AGAP012288-PA [Anopheles gambiae str. PE	0.951	0.860	0.598	0.0
350415887		572	PREDICTED: vang-like protein 1-like [Bom	0.973	0.905	0.605	0.0
340710342		572	PREDICTED: vang-like protein 1-like [Bom	0.973	0.905	0.605	0.0
307187749		573	Vang-like protein 1 [Camponotus floridan	0.968	0.898	0.607	0.0

>gi\|328724953\|ref\|XP_001945204.2\| PREDICTED: vang-like protein 1-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/527 (67%), Positives = 436/527 (82%), Gaps = 10/527 (1%)

Query: 8   AGQESRSSKSKKDDKMAPFQTAVTLDDNRDG-EVIEVQILPQDENWGENTTAVTGNTSEQ 66
           A + S S  +  +  MAP+QT V LDD RDG +V+EVQILPQDENWGENTTA+TGNTS Q
Sbjct: 41  ARKYSDSLNNPYETAMAPYQTTVMLDDTRDGQDVVEVQILPQDENWGENTTAITGNTSVQ 100

Query: 67  SGSLEDL-ALWPGGNQETGLLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVT 125
           SGS+E++ ALWP   Q++    LCHRYI +  TG+L +++FLSPL ML LPKLGVFS   
Sbjct: 101 SGSMEEMGALWPDTEQKSAFPILCHRYIATTLTGLLCLVAFLSPLAMLVLPKLGVFSPAA 160

Query: 126 SNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVV 185
           +NL+ QQ+  LL CG+ECKG+L+S  FKM LLAV +WA+FLR  +ATMPRI +FRAIV+ 
Sbjct: 161 TNLSPQQRETLLNCGAECKGVLVSLAFKMFLLAVASWAIFLRPVKATMPRIHVFRAIVLA 220

Query: 186 FLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEI 245
            + +C   +WLF++VQ+TEG RAT TGED+LEYR +VSY+SS  D LL IHY+ +VL+EI
Sbjct: 221 LVSICCGIFWLFYVVQVTEGVRATATGEDLLEYRALVSYSSSLCDCLLCIHYVAIVLMEI 280

Query: 246 RHLQPAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSK 305
           RHLQPAFYIKV RSPDG+S+SY IGQL IQRAAVWVL++YYTEFSIYNPYLE+LPVSKSK
Sbjct: 281 RHLQPAFYIKVVRSPDGESRSYPIGQLCIQRAAVWVLERYYTEFSIYNPYLERLPVSKSK 340

Query: 306 KNHSHSSFKFYDVDGGFNNSTLQSGGECNRSVSNVHPRRRDSSHNERFYEEHDYERRVKK 365
           KN   SSFKFYD++ G  ++TLQ     +R   N H RRRDSSHNERFYEEHDYERRVKK
Sbjct: 341 KN--ASSFKFYDIE-GIGSNTLQMSQ--SRGTMNGHARRRDSSHNERFYEEHDYERRVKK 395

Query: 366 RRARLITATEEAFTHIKRTGHQEPVVGGVPMDSYEAAQAVFPSLARALQKYLRVTRQQPR 425
           RRARL+TA EEAFTH+KR+ H +P +    MD YEAAQAVFP++AR+LQKYLRVTRQQPR
Sbjct: 396 RRARLLTAAEEAFTHVKRS-HHDPGISA--MDPYEAAQAVFPTIARSLQKYLRVTRQQPR 452

Query: 426 HSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQN 485
           H+VE+ILSHLA+CL+HD SP+AFLEP+L  APVLQNEKEQK +QSWSLIC+ELLTR L++
Sbjct: 453 HTVETILSHLALCLTHDASPKAFLEPYLSAAPVLQNEKEQKSLQSWSLICNELLTRALKD 512

Query: 486 GTVFQLLQNEVSLICSVHALPHFNISEEVIHPKSNRFVLRMSSETSV 532
           GTVFQL QN++SL+C+VH LPHF+I+EEVI+PKSNRFVL+++SETSV
Sbjct: 513 GTVFQLRQNDISLLCTVHKLPHFSITEEVINPKSNRFVLKLNSETSV 559

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|282403507\|ref\|NP_001164150.1\| van-gogh [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|270002841\|gb\|EEZ99288.1\| van-gogh [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|242014085\|ref\|XP_002427728.1\| conserved hypothetical protein [Pediculus humanus corporis] gi\|212512169\|gb\|EEB14990.1\| conserved hypothetical protein [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|157167184\|ref\|XP_001652211.1\| hypothetical protein AaeL_AAEL006801 [Aedes aegypti] gi\|108877337\|gb\|EAT41562.1\| AAEL006801-PA [Aedes aegypti]	Back alignment and taxonomy information

>gi\|170049282\|ref\|XP_001855183.1\| van Gogh [Culex quinquefasciatus] gi\|167871116\|gb\|EDS34499.1\| van Gogh [Culex quinquefasciatus]	Back alignment and taxonomy information

>gi\|158300293\|ref\|XP_320249.4\| AGAP012288-PA [Anopheles gambiae str. PEST] gi\|157013089\|gb\|EAA00250.4\| AGAP012288-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|350415887\|ref\|XP_003490779.1\| PREDICTED: vang-like protein 1-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|340710342\|ref\|XP_003393751.1\| PREDICTED: vang-like protein 1-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|307187749\|gb\|EFN72721.1\| Vang-like protein 1 [Camponotus floridanus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		532
FB\|FBgn0015838		584	Vang "Van Gogh" [Drosophila me	0.945	0.861	0.585	1.4e-158
UNIPROTKB\|Q90Z05		521	vangl2-b "Vang-like protein 2-	0.716	0.731	0.479	1.3e-98
UNIPROTKB\|E1C1K5		525	VANGL1 "Uncharacterized protei	0.712	0.721	0.492	2.8e-98
MGI\|MGI:2135272		521	Vangl2 "vang-like 2 (van gogh,	0.716	0.731	0.479	1.2e-97
RGD\|1309442		521	Vangl2 "VANGL planar cell pola	0.716	0.731	0.479	1.2e-97
UNIPROTKB\|F1MFE8		575	VANGL2 "Uncharacterized protei	0.716	0.662	0.477	1.5e-97
UNIPROTKB\|Q9ULK5		521	VANGL2 "Vang-like protein 2" [	0.716	0.731	0.477	1.5e-97
UNIPROTKB\|Q90X64		521	vangl2-a "Vang-like protein 2-	0.716	0.731	0.477	5.2e-97
UNIPROTKB\|Q4VBG5		521	vangl2 "Vang-like protein 2" [	0.716	0.731	0.474	6.6e-97
UNIPROTKB\|H9L3K5		459	VANGL2 "Uncharacterized protei	0.716	0.830	0.467	3.7e-96

FB\|FBgn0015838 Vang "Van Gogh" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1545 (548.9 bits), Expect = 1.4e-158, P = 1.4e-158
 Identities = 304/519 (58%), Positives = 386/519 (74%)

Query:    23 MAPFQTAVTL--DDNRDG-EVIEVQILPQDENWGENTTAVTGNTSEQSGSLEDLA-LWPG 78
             MAP+QT+V +  D + DG EVIEVQILPQDENWGENTTAVTGNTSEQS S+ED+  +W  
Sbjct:    73 MAPYQTSVNMTGDGSHDGQEVIEVQILPQDENWGENTTAVTGNTSEQSISMEDINNMWHR 132

Query:    79 GNQETGLLFLCHRYIGSVFTGILSVISFXXXXXXXXXXXXGVFSSVTSN--LTSQQKAAL 136
                + G  F C RY+ S F  +L   +F            G F S   +  +T   +  L
Sbjct:   133 -ESDKGFSFACRRYVESSFYFLLGCGAFFSPVAMVVMPYVGFFPSAFDHPEITQTVRTQL 191

Query:   137 LACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFVCTIAYWL 196
             LAC  +CKG L+S   +++LLA+G WAVF+R+  ATMPRIF++RA+V++ + +CT AYWL
Sbjct:   192 LACSEQCKGQLVSLAARLLLLAIGLWAVFMRRTSATMPRIFLYRALVLLLVTICTFAYWL 251

Query:   197 FFIVQMTEGARATV-TGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFYIK 255
             F+IVQ+T GA+  V TG D ++Y+ +V YA++FVD LLFIHY+ VVL+E+RH QP +YIK
Sbjct:   252 FYIVQVTNGAKIVVETGGDAVDYKSLVGYATNFVDTLLFIHYVAVVLLELRHQQPCYYIK 311

Query:   256 VTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVXXXXXXXXXXXXXX 315
             + RSPDG S+SY +GQLSIQRAAVWVLQ YY +F I+NPYLE++P+              
Sbjct:   312 IIRSPDGVSRSYMLGQLSIQRAAVWVLQHYYVDFPIFNPYLERIPISVSKSQRNKISNSF 371

Query:   316 --YDVDGGFNNSTLQSGGECNRSVSNVHPRRRDSSHNERFYEEHDYERRVKKRRARLITA 373
               Y+VDG  +NS  QS    +R+V   + RRRDSSHNERFYEEH+YERRVKKRRARLITA
Sbjct:   372 KYYEVDG-VSNSQQQSQ---SRAVLAANARRRDSSHNERFYEEHEYERRVKKRRARLITA 427

Query:   374 TEEAFTHIKRTGHQEPVVGGVPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSVESILS 433
              EEAFTHIKR  H EP    +P+D  EAA AVFPS+ARALQKYLRVTRQQPRH+ ESIL 
Sbjct:   428 AEEAFTHIKRI-HNEPAPA-LPLDPQEAASAVFPSMARALQKYLRVTRQQPRHTFESILK 485

Query:   434 HLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTVFQLLQ 493
             HLA CL HDLSPRAFLEP+L  +PV+Q+EKE++ +QSWSLICDE+++RP+ N   FQL+Q
Sbjct:   486 HLAHCLKHDLSPRAFLEPYLTESPVMQSEKERRWVQSWSLICDEIVSRPIGNECTFQLIQ 545

Query:   494 NEVSLICSVHALPHFNISEEVIHPKSNRFVLRMSSETSV 532
             N+VSL+ +VH LPHFN++EEV+ PKSN+FVL+++SETSV
Sbjct:   546 NDVSLMVTVHKLPHFNLAEEVVDPKSNKFVLKLNSETSV 584

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0001736 "establishment of planar polarity" evidence=IEP;IMP;TAS

GO:0042067 "establishment of ommatidial planar polarity" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0005109 "frizzled binding" evidence=IPI

GO:0070593 "dendrite self-avoidance" evidence=IMP

GO:0090175 "regulation of establishment of planar polarity" evidence=IGI

UNIPROTKB\|Q90Z05 vangl2-b "Vang-like protein 2-B" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C1K5 VANGL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:2135272 Vangl2 "vang-like 2 (van gogh, Drosophila)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1309442 Vangl2 "VANGL planar cell polarity protein 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MFE8 VANGL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9ULK5 VANGL2 "Vang-like protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q90X64 vangl2-a "Vang-like protein 2-A" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4VBG5 vangl2 "Vang-like protein 2" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|H9L3K5 VANGL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4VBG5	VANG2_XENTR	No assigned EC number	0.4549	0.7875	0.8042	yes	N/A
Q8TAA9	VANG1_HUMAN	No assigned EC number	0.4547	0.8571	0.8702	yes	N/A
Q80Z96	VANG1_MOUSE	No assigned EC number	0.4588	0.8571	0.8669	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		532
pfam06638		507	pfam06638, Strabismus, Strabismus protein	0.0

>gnl\|CDD\|219117 pfam06638, Strabismus, Strabismus protein	Back alignment and domain information

 Score =  671 bits (1733), Expect = 0.0
 Identities = 265/524 (50%), Positives = 357/524 (68%), Gaps = 35/524 (6%)

Query: 11  ESRSSKS-KKDDKMAPFQTAVTLDDNRDGEVIEVQILPQDENWGENTTAVTGNTSEQSGS 69
            SRS KS        P   + +         IEVQI PQD+NWGE TTAVTG TSE S S
Sbjct: 17  SSRSDKSVTIQAPGEPLLDSDSAI-----SSIEVQIEPQDDNWGETTTAVTG-TSEHSIS 70

Query: 70  LEDLALWPGGNQETGLLFLCHRYIGSVFTGILSVISFLSPLLMLALPKLGVFSSVTSNLT 129
           +EDLA      ++  +   C RY+G    G+L +++F++PL  + LP++G +        
Sbjct: 71  MEDLARIGKDMEDRVVGLNCRRYLGLALGGLLGLLAFVTPLAFIVLPQVG-WRD------ 123

Query: 130 SQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFIFRAIVVVFLFV 189
                 L  CG+ C+G+L+S  FK+++L + +WA+FLR PRA MPRIF+FRA+++V +F+
Sbjct: 124 -----RLEPCGTACEGLLISLAFKLLILLIASWALFLRPPRADMPRIFVFRALLLVLVFL 178

Query: 190 CTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQ 249
              +YWLF+ V+        + G     Y+ +V YA S VDALLFIHY+ VVL+E+RHLQ
Sbjct: 179 FLFSYWLFYGVR--------ILGAREKNYKGIVQYAVSLVDALLFIHYLAVVLLELRHLQ 230

Query: 250 PAFYIKVTRSPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSKKNHS 309
           P FY+KV RS DG+S+ Y IGQLSIQRAAVWVL+ YY +F +YNPYL   P S++ K+ +
Sbjct: 231 PQFYVKVVRSTDGESRFYNIGQLSIQRAAVWVLENYYKDFPVYNPYLLNAPKSRAAKHMA 290

Query: 310 HSSFKFYDVDGGFNNSTLQSGGECNRSVSNVHPRRRDSSHNERFYEEHDYERRVKKRRAR 369
              FK Y+VDG  +NST QS     R++     RRRDSSHNER+YEE +YERRV+KR+AR
Sbjct: 291 G--FKVYNVDGPTSNSTSQS-----RALIAAAARRRDSSHNERYYEEAEYERRVRKRKAR 343

Query: 370 LITATEEAFTHIKRT-GHQEPVVGGVPMDSYEAAQAVFPSLARALQKYLRVTRQQPRHSV 428
           L+ A EEAFTHIKR     E      PMD  EAAQA+FPS+ARALQKYLR TRQQ RH++
Sbjct: 344 LVVAVEEAFTHIKRLQEEDENKKPANPMDPREAAQAIFPSMARALQKYLRTTRQQHRHTM 403

Query: 429 ESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTV 488
           ESIL HLA CL+HD+SP+AFLE +L P P LQ +KE++ ++ W+L+ +E +T  L++GTV
Sbjct: 404 ESILQHLAFCLTHDMSPKAFLERYLSPGPTLQYDKERRGVRQWTLVSEESVTSGLRDGTV 463

Query: 489 FQLLQNEVSLICSVHALPHFNISEEVIHPKSNRFVLRMSSETSV 532
           FQL Q + SL+ +V ++P FN+SEE + PKS++FVL++ SETSV
Sbjct: 464 FQLKQLDFSLVVTVKSIPFFNLSEEFVDPKSHKFVLKLQSETSV 507

This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates. Length = 507

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		532
PF06638		505	Strabismus: Strabismus protein; InterPro: IPR00953	100.0
KOG3814\|consensus		531		100.0

>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2	Back alignment and domain information

Probab=100.00  E-value=2.7e-219  Score=1696.72  Aligned_cols=478  Identities=59%  Similarity=1.015  Sum_probs=463.3

Q ss_pred             ccceeeec------CCCCCceeeeeccCCCCCccccceeeeCCCcccccccccccCCCCCCCCCcc-ccccccchhhhhh
Q psy711           26 FQTAVTLD------DNRDGEVIEVQILPQDENWGENTTAVTGNTSEQSGSLEDLALWPGGNQETGL-LFLCHRYIGSVFT   98 (532)
Q Consensus        26 ~~~sv~i~------~~~~~e~ievqil~qDdNWGEtTTaiTGnTSe~S~S~eD~~~~~~~d~~~~~-g~~C~R~l~~~~~   98 (532)
                      -+|||+|+      -+++.+++||||+||||||||||||||| |||+|+|+||++++.+ |++++. |++|+||+|++++
T Consensus        20 ~~ks~~i~~p~~~~~~~~~~~~ev~i~~qDdnWGEttTaiTg-TSe~s~S~ed~~~~~~-~~~~~~~~~~c~r~l~~~~~   97 (505)
T PF06638_consen   20 SEKSVTIQAPMEPLLGNDSERIEVQILPQDDNWGETTTAITG-TSEHSISMEDVSRLSK-DMEDSVVGFDCSRYLGLILA   97 (505)
T ss_pred             CCCCCcccCCCCCcCCccccccccccCCCCCCccccceEEec-CCcCCCccchhhhhcc-CccccccCcccceeHHHHHH
Confidence            36677764      1222388899999999999999999999 9999999999999999 877666 9999999999999


Q ss_pred             hHhHHHhhhhhhHHHhhcCccCCCcccccchhhhhhhhcccCCCCCccchhHHHHHHHHHHHHHHHHhcCCCCCCChHHH
Q psy711           99 GILSVISFLSPLLMLALPKLGVFSSVTSNLTSQQKAALLACGSECKGMLLSFTFKMILLAVGAWAVFLRQPRATMPRIFI  178 (532)
Q Consensus        99 ~~L~l~aflSPiaflvLP~i~lw~~~~~~~~~~~~~~l~~Cg~~CeGlliSlAfKLliLlig~WALf~R~~~a~mPRifv  178 (532)
                      ++||++||+|||||++||++ +|+           +++++||++|||+||||||||+||+||+|||||||++|+|||||+
T Consensus        98 ~~L~l~aflSPiaflvLP~i-l~~-----------~~~~~C~~~CeGllislafKLliLlig~WAlf~R~~~a~lPRif~  165 (505)
T PF06638_consen   98 SILGLLAFLSPIAFLVLPKI-LWR-----------WQLEPCGAECEGLLISLAFKLLILLIGTWALFFRRPRADLPRIFV  165 (505)
T ss_pred             HHHHHHHHHhhHHHHHhccc-ccC-----------ccccccCCcccceeHHHHHHHHHHHHHHHHHhcCcccCCCchhHH
Confidence            99999999999999999999 888           558999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhheeeecccccccccccccccceeeehhhhHHHHHHHHHHHHHHHHhhhccCceEEEEEEe
Q psy711          179 FRAIVVVFLFVCTIAYWLFFIVQMTEGARATVTGEDVLEYRVVVSYASSFVDALLFIHYITVVLIEIRHLQPAFYIKVTR  258 (532)
Q Consensus       179 fRalll~lvfl~~~syWLFY~VrIl~~~~~~~~~~~~~dY~~IV~yA~SlvDaLLFiHYlAvVLLElR~lqp~f~lkVVR  258 (532)
                      ||+++|+|+|+++|+|||||||||+++        ++.||++||+||+||||||||||||||||||||||||+|+|||||
T Consensus       166 fRa~ll~Lvfl~~~syWLFY~vrIl~~--------~~~dy~~IV~yA~SlvDaLLFiHYlavvLLElR~lqp~f~vkVVR  237 (505)
T PF06638_consen  166 FRALLLVLVFLFLFSYWLFYGVRILDP--------RESDYQGIVSYAVSLVDALLFIHYLAVVLLELRHLQPQFYVKVVR  237 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheeeec--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEE
Confidence            999999999999999999999999999        999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccccccChhhHHHHHHHHHHHhhcccCcCCcccccCccccccccCCCCCceEEecCCCCCCCcccCCCccccccc
Q psy711          259 SPDGDSKSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSKKNHSHSSFKFYDVDGGFNNSTLQSGGECNRSVS  338 (532)
Q Consensus       259 SpDGesR~Y~iG~lSIQrAAv~VLe~YY~dFpvYNP~L~~~~~s~~~k~~~~s~fK~Y~vDg~~n~~~~~~qs~~~Rai~  338 (532)
                      |||||||||+||||||||||+||||+||+|||+|||||+++|+++..|++  ++||||||||++|++  ++|+   ||++
T Consensus       238 SpDGesR~Y~iG~lSIQrAAv~vLe~Yy~dFpvyNP~L~~~~~~~~~~~~--s~fK~Ydvdg~~~~~--~~~s---ra~i  310 (505)
T PF06638_consen  238 SPDGESRFYNIGQLSIQRAAVWVLEKYYKDFPVYNPYLERAPKSRAAKHM--SGFKVYDVDGPNNNS--EGQS---RAII  310 (505)
T ss_pred             CCCCceeeeecCchhHHHHHHHHHHHHhhcCCccCcchhhcCcccccccC--CCceEEecCCCCCCc--Cccc---HHHH
Confidence            99999999999999999999999999999999999999999999999999  999999999997777  8899   9999


Q ss_pred             cccCCCCCCCccccchhhhhhhhhhhhhhhhhhHhHHHHhhhhhhccCCC-CCCCCCCCChHHHHHHhhHHHHHHHHHHH
Q psy711          339 NVHPRRRDSSHNERFYEEHDYERRVKKRRARLITATEEAFTHIKRTGHQE-PVVGGVPMDSYEAAQAVFPSLARALQKYL  417 (532)
Q Consensus       339 ~aaarRRd~shNEryYEE~E~ERRVrKRraRLv~A~EeAFtHikR~~~~e-~~~~~~~Mdp~EAAQaIFpsmAR~LQKYL  417 (532)
                      +|+|||||+|||||||||+|||||||||||||++|||||||||||+++++ ++.|+++|||+||||||||+|||||||||
T Consensus       311 ~aaarRr~~~hNer~yeE~E~ERRvrKRraRLv~A~EeAFtHikr~~~~~~~~~~~~~Mdp~eAAQaiFpsmaR~LQKYL  390 (505)
T PF06638_consen  311 AAAARRRDSSHNERYYEEAEYERRVRKRRARLVVAVEEAFTHIKRLQEEEQNKRPGEPMDPREAAQAIFPSMARALQKYL  390 (505)
T ss_pred             HHhhhhcCCCcchhhhhhHHhhhhhcccceeeeehHHHHHHHHHhhccccccCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987 68999999999999999999999999999


Q ss_pred             HHhccCCCCChhHHHHHHHHhhhcCCCccccccccCCCCCccccccccccccceEEEeccccccCCCCCcEEEEeeCcEE
Q psy711          418 RVTRQQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVLQNEKEQKEIQSWSLICDELLTRPLQNGTVFQLLQNEVS  497 (532)
Q Consensus       418 R~TRQQ~~ht~esIl~HLa~CL~~~mspkAFLEryl~~~P~lq~~~e~~~~~~WsLvcde~vt~~L~~G~vF~Lk~~d~s  497 (532)
                      |+||||||||||||++|||+||+||||||||||||+++||++||++|++++|+|+|||||++++||+||++|||||+|||
T Consensus       391 R~TRQq~~ht~esIl~HLa~Cl~~~~sp~aFLEryl~~~P~l~~~~e~~~~~~WsLvcde~~t~~l~~g~~F~Lk~~d~s  470 (505)
T PF06638_consen  391 RTTRQQPRHTMESILDHLAFCLSHDMSPRAFLERYLSPGPTLQYDKERWQSQQWSLVCDEPVTSGLRDGTVFQLKQNDVS  470 (505)
T ss_pred             HHhccCccCCHHHHHHHHHHHHhCCCCHHHHhhhcCCCCCCcCcCcccccCcceEEEEchhhhhcccCCcEEEEEeccEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeecCeeeeeeeeeCCCCCeeEEeccCccCC
Q psy711          498 LICSVHALPHFNISEEVIHPKSNRFVLRMSSETSV  532 (532)
Q Consensus       498 LvvtV~~iP~f~LsEe~idpks~KFvLrl~SETSV  532 (532)
                      ||||||+||||+|+||++|||||||||||||||||
T Consensus       471 Lvvtv~~iP~~~lsEe~~dpks~kFvLrl~SETSV  505 (505)
T PF06638_consen  471 LVVTVHKIPFFNLSEEFVDPKSNKFVLRLNSETSV  505 (505)
T ss_pred             EEEEEecCCceEeeEEeecCCCceEEEecCCCCCC
Confidence            99999999999999999999999999999999998

The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane

>KOG3814\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		532
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 62/391 (15%), Positives = 110/391 (28%), Gaps = 144/391 (36%)

Query: 211 TGEDVLEYRVVVS-YASSFVDALLFIH---YITVVLI--EIRHLQPAFYIKVTRSPDGDS 264
           TGE   +Y+ ++S +  +FVD             +L   EI H        +  S D  S
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--------IIMSKDAVS 62

Query: 265 KSYAIGQLSIQRAAVWVLQKYYTEFSIYNPYLEKLPVSKSKKNHSHSSFKFYDVDGGFNN 324
            +  +          W L     E  +   ++E++     + N     +KF         
Sbjct: 63  GTLRL---------FWTLLSKQEE--MVQKFVEEV----LRIN-----YKFL-------- 94

Query: 325 STLQSGGECNRSVSNVHPRRRDSSHNERFYEE-----HDYERRVKKR---RARLITATEE 376
                       +S +   +R  S   R Y E     ++  +   K    R +      +
Sbjct: 95  ------------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 377 AFTHIKRTGHQEPVVGGVPMD----SYEAAQAV--------FP---------------SL 409
           A   ++    +  ++ G  +     ++ A                             ++
Sbjct: 143 ALLELRP--AKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 410 ARALQK-YLRVTR---------QQPRHSVESILSHLAMCLSHDLSPRAFLEPFLIPAPVL 459
              LQK   ++              +  + SI + L   L         L        VL
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--------VL 250

Query: 460 QNEKEQKEIQSWSLICDELL-TRP------LQNGTVFQLLQNEVS--------------- 497
            N +  K   +++L C  LL TR       L   T   +  +  S               
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 498 LICSVHALPHFNISEEV--IHPKSNRFVLRM 526
           L C    LP      EV   +P      L +
Sbjct: 311 LDCRPQDLP-----REVLTTNP----RRLSI 332

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00