Psyllid ID: psy7132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYLNG
Secondary Structure (PSIPRED)
ccccHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcc
Coil and Loop (DISEMBL)
mgliggalfhgikgfrnapsgmnrrflgmtttikqkspilagnFAVWGAMFSTIDCSLVyvrkkedpwnsiisGAATGGILAARNGVPAMAGSALIGAFYLNG
Flexible Loop (DISEMBL)
mgliggalfhgikgfrnapsgmNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYLNG
Low Complexity Region (SEG)
MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYLNG
Disordered region (IsUnstruct)
**LIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL**
Disordered Region (DISOPRED)
MGLIGGALFHGIKGFRNAPSG***RFLG*TTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYLNG
Disordered Region (DISEMBL)
MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYLNG
Disordered Region (DISPRO)
*GLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYLNG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYLNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q9VGA2	222	Probable mitochondrial im	no	N/A	0.980	0.454	0.633	5e-33
Q9VNA0	179	Probable mitochondrial im	no	N/A	0.941	0.541	0.639	3e-30
Q9VN97	224	Probable mitochondrial im	no	N/A	0.980	0.450	0.574	6e-30
Q99595	171	Mitochondrial import inne	yes	N/A	0.980	0.590	0.633	6e-30
Q9Z0V8	171	Mitochondrial import inne	yes	N/A	0.980	0.590	0.623	7e-30
O35092	171	Mitochondrial import inne	yes	N/A	0.980	0.590	0.613	3e-29
Q9Z0V7	172	Mitochondrial import inne	no	N/A	0.980	0.587	0.584	4e-28
O60830	172	Mitochondrial import inne	no	N/A	0.980	0.587	0.574	1e-27
Q2HJE9	172	Mitochondrial import inne	no	N/A	0.980	0.587	0.574	3e-27
Q9SP35	243	Mitochondrial import inne	yes	N/A	0.961	0.407	0.534	1e-24

>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit Tim17 3 OS=Drosophila melanogaster GN=Tim17a1 PE=2 SV=1

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 81/101 (80%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGG+LF  +KGFRNAP+G+ RR  G    +K ++P +AG+FAVWGA FST+DC+LV+
Sbjct: 22  MGTIGGSLFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPSIAGSFAVWGATFSTVDCALVH 81

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
            R++ED WNSI+SGAATGGILAARNG+ AMA SAL+G   L
Sbjct: 82  YRQREDAWNSILSGAATGGILAARNGIRAMANSALVGCLVL 122

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
Drosophila melanogaster (taxid: 7227)

>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 73/97 (75%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG +GG  F  IKGFRNAPSG+  R  G    ++ +S ++ GNFAVWGA FS IDCSLVY
Sbjct: 23  MGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLVGGNFAVWGATFSAIDCSLVY 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIG 97
            RKKEDPWN+IISGA TGGILAAR G+ +M  SAL+G
Sbjct: 83  FRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVG 119

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q9VN97|TI17D_DROME Probable mitochondrial import inner membrane translocase subunit Tim17 4 OS=Drosophila melanogaster GN=Tim17a2 PE=3 SV=1

 Score =  129 bits (324), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 78/101 (77%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG +GG+LF  +KGFRNAPSG+ R   G   +++ ++P +AG+FA+WGA FST+DC +V 
Sbjct: 22  MGTMGGSLFQYLKGFRNAPSGLRRGLHGGIESVRLRTPAIAGSFAIWGATFSTVDCVMVS 81

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
            R++ED WN+I+SGAATGGILAARNG+ AMA SA +G   L
Sbjct: 82  YRQREDSWNAIVSGAATGGILAARNGIRAMANSAFVGCLVL 122

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 73/101 (72%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGG +F  IKGFRN+P G+N R  G  T IK ++P L G+FAVWG +FS IDCS+V 
Sbjct: 23  MGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQ 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           VR KEDPWNSI SGA TG ILAARNG  AM GSA +G   L
Sbjct: 83  VRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILL 123

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-A OS=Mus musculus GN=Timm17a PE=2 SV=1

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 73/101 (72%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGG +F   KGFRN+P G+N R  G  T IK ++P L G+FAVWG +FSTIDCS+V 
Sbjct: 23  MGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCSMVQ 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +R KEDPWNSI SGA TG ILAARNG  AM GSA +G   L
Sbjct: 83  IRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILL 123

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Mus musculus (taxid: 10090)

>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17-A OS=Rattus norvegicus GN=Timm17a PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 72/101 (71%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGG +F   KGFRN+P G+N R  G  T IK ++P L G+FAVWG +FSTIDC +V 
Sbjct: 23  MGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCGMVQ 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +R KEDPWNSI SGA TG ILAARNG  AM GSA +G   L
Sbjct: 83  IRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILL 123

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=2 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 74/101 (73%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG+IGG +F  IKGFRNAP G+  RF G    ++ ++P + G+FAVWG +FSTIDC LV 
Sbjct: 23  MGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVR 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +R KEDPWNSI SGA TG +LAAR+G  AM GSA++G   L
Sbjct: 83  LRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGILL 123

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Mus musculus (taxid: 10090)

>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B PE=1 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 73/101 (72%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG+IGG +F  IKGFRNAP G+  R  G    ++ ++P + G+FAVWG +FSTIDC LV 
Sbjct: 23  MGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQIGGSFAVWGGLFSTIDCGLVR 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +R KEDPWNSI SGA TG +LAAR+G  AM GSA++G   L
Sbjct: 83  LRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILL 123

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane translocase subunit Tim17-B OS=Bos taurus GN=TIMM17B PE=2 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 72/101 (71%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG+IGG +F  IKGFRNAP GM  R  G    ++ ++P + G+FAVWG +FSTIDC LV 
Sbjct: 23  MGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVR 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +R KEDPWNSI SGA TG +LAAR+   AM GSA++G   L
Sbjct: 83  LRGKEDPWNSITSGALTGAVLAARSVPLAMVGSAMMGGILL 123

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Bos taurus (taxid: 9913)

>sp|Q9SP35|TI172_ARATH Mitochondrial import inner membrane translocase subunit TIM17-2 OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG +GG+ FH IKG  N+P G   RF+G T ++   +P   G+FAVWG +FST DC++VY
Sbjct: 25  MGAVGGSAFHFIKGTYNSPKG--SRFVGGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVY 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +R+KEDPWNSII+GAATGG L+ R G  A + SA+ G   L
Sbjct: 83  LRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLL 123

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
91078052	165	PREDICTED: similar to CG40451 CG40451-PA	0.980	0.612	0.782	2e-39
270002311	177	hypothetical protein TcasGA2_TC001322 [T	0.980	0.570	0.782	2e-39
195446435	173	GK12238 [Drosophila willistoni] gi|19416	0.980	0.583	0.792	2e-39
328778455	160	PREDICTED: mitochondrial import inner me	0.980	0.631	0.792	3e-39
340727758	159	PREDICTED: mitochondrial import inner me	0.980	0.635	0.792	4e-39
332376989	164	unknown [Dendroctonus ponderosae]	0.980	0.615	0.782	5e-39
383849617	162	PREDICTED: mitochondrial import inner me	0.980	0.623	0.762	7e-39
350418163	159	PREDICTED: mitochondrial import inner me	0.980	0.635	0.782	7e-39
345489360	163	PREDICTED: mitochondrial import inner me	0.980	0.619	0.772	1e-38
198454588	173	GA26255 [Drosophila pseudoobscura pseudo	0.980	0.583	0.772	1e-38

>gi|91078052|ref|XP_971201.1| PREDICTED: similar to CG40451 CG40451-PA [Tribolium castaneum]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 88/101 (87%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MGLIGG +F  IKGFRNAPSG NRRF+G    IKQ+SPI+AGNFAVWG MFSTIDC+L++
Sbjct: 23  MGLIGGGVFQSIKGFRNAPSGFNRRFVGSLAAIKQRSPIIAGNFAVWGGMFSTIDCALIH 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +RKKEDPWNSIISGAATGGILAARNG+PAMAGSA IG   L
Sbjct: 83  IRKKEDPWNSIISGAATGGILAARNGLPAMAGSAFIGGVLL 123

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002311|gb|EEZ98758.1| hypothetical protein TcasGA2_TC001322 [Tribolium castaneum]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 88/101 (87%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MGLIGG +F  IKGFRNAPSG NRRF+G    IKQ+SPI+AGNFAVWG MFSTIDC+L++
Sbjct: 35  MGLIGGGVFQSIKGFRNAPSGFNRRFVGSLAAIKQRSPIIAGNFAVWGGMFSTIDCALIH 94

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +RKKEDPWNSIISGAATGGILAARNG+PAMAGSA IG   L
Sbjct: 95  IRKKEDPWNSIISGAATGGILAARNGLPAMAGSAFIGGVLL 135

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195446435|ref|XP_002070779.1| GK12238 [Drosophila willistoni] gi|194166864|gb|EDW81765.1| GK12238 [Drosophila willistoni]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 87/101 (86%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGG +F  IKGFRNAPSGMNRR LG  T IK +SP++AGNFAVWG MFSTIDC+LV+
Sbjct: 23  MGCIGGGVFQAIKGFRNAPSGMNRRLLGSLTAIKTRSPVIAGNFAVWGGMFSTIDCTLVH 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
            RKKEDPWNSIISGAATGGILAARNGVPAMAGSA+IG   L
Sbjct: 83  FRKKEDPWNSIISGAATGGILAARNGVPAMAGSAIIGGVLL 123

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778455|ref|XP_003249498.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A isoform 1 [Apis mellifera] gi|328778457|ref|XP_003249499.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A isoform 2 [Apis mellifera] gi|328778459|ref|XP_003249500.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A isoform 3 [Apis mellifera] gi|380028326|ref|XP_003697856.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A-like [Apis florea]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 90/101 (89%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGGA+F  IKGFRNAPSG+N+R LG  T IKQKSPI+AGNFA+WG MFSTIDC+LV+
Sbjct: 23  MGAIGGAVFQTIKGFRNAPSGINKRVLGSLTAIKQKSPIIAGNFALWGGMFSTIDCTLVH 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +RKKEDPWNSIISGAATGGILAARNG+PAMAGSA+IG   L
Sbjct: 83  LRKKEDPWNSIISGAATGGILAARNGLPAMAGSAIIGGVLL 123

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727758|ref|XP_003402203.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A-like isoform 1 [Bombus terrestris] gi|340727760|ref|XP_003402204.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A-like isoform 2 [Bombus terrestris]

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/101 (79%), Positives = 89/101 (88%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGGA+F  IKGFRNAPSG+N+R LG    IKQKSPI+AGNFA+WG MFSTIDCSLV+
Sbjct: 23  MGAIGGAVFQSIKGFRNAPSGINKRVLGSLIAIKQKSPIIAGNFALWGGMFSTIDCSLVH 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +RKKEDPWNSIISGAATGGILAARNG+PAMAGSA+IG   L
Sbjct: 83  LRKKEDPWNSIISGAATGGILAARNGLPAMAGSAIIGGVLL 123

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376989|gb|AEE63634.1| unknown [Dendroctonus ponderosae]

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 87/101 (86%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MGLIGG +F  IKGFRNAPSG+NRR LG    IKQ+SPI+AGNFAVWG MFSTIDC+L++
Sbjct: 23  MGLIGGGVFQSIKGFRNAPSGINRRLLGSLVAIKQRSPIIAGNFAVWGGMFSTIDCALIH 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
            RKKEDPWNSIISGAATGGILAARNG+PAMAGSA IG   L
Sbjct: 83  ARKKEDPWNSIISGAATGGILAARNGLPAMAGSAFIGGVLL 123

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849617|ref|XP_003700441.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-B-like [Megachile rotundata]

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 90/101 (89%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGGA+F  IKGFRNAPSG+N+RF+G    +KQ+SPI+AGNFA+WG MFSTIDC+LV+
Sbjct: 23  MGAIGGAVFQSIKGFRNAPSGLNKRFMGSLMAVKQRSPIIAGNFALWGGMFSTIDCTLVH 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +RKKEDPWNSIISGAATGGILAARNG+PAMAGSA+IG   L
Sbjct: 83  LRKKEDPWNSIISGAATGGILAARNGLPAMAGSAIIGGVLL 123

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418163|ref|XP_003491766.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A-like [Bombus impatiens]

 Score =  164 bits (414), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 89/101 (88%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGGA+F  IKGFRNAPSG+N+R LG    IKQKSPI+AGNFA+WG MFSTIDC+LV+
Sbjct: 23  MGAIGGAVFQSIKGFRNAPSGINKRVLGSLIAIKQKSPIIAGNFALWGGMFSTIDCTLVH 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +RKKEDPWNSIISGAATGGILAARNG+PAMAGSA+IG   L
Sbjct: 83  LRKKEDPWNSIISGAATGGILAARNGLPAMAGSAIIGGVLL 123

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489360|ref|XP_003426117.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-B-like [Nasonia vitripennis]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 88/101 (87%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGGA+F  IKGFRNAPSG+N+RF G    IKQ+SPI+AGNFA+WG MFSTIDC+LV+
Sbjct: 23  MGAIGGAVFQSIKGFRNAPSGLNKRFTGSLMAIKQRSPIIAGNFAIWGGMFSTIDCTLVH 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
            RKKEDPWNSIISGAATGGILAARNG+PAMAGSA+IG   L
Sbjct: 83  FRKKEDPWNSIISGAATGGILAARNGLPAMAGSAIIGGVLL 123

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198454588|ref|XP_002137912.1| GA26255 [Drosophila pseudoobscura pseudoobscura] gi|198132863|gb|EDY68470.1| GA26255 [Drosophila pseudoobscura pseudoobscura]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 87/101 (86%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGG +F  IKGFRNAPSGM+RR +G  T IK +SP++AGNFAVWG MFSTIDC+LV+
Sbjct: 23  MGCIGGGVFQAIKGFRNAPSGMSRRLIGSMTAIKTRSPVIAGNFAVWGGMFSTIDCTLVH 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
            RKKEDPWNSIISGAATGGILAARNGVPAMAGSA+IG   L
Sbjct: 83  FRKKEDPWNSIISGAATGGILAARNGVPAMAGSAIIGGVLL 123

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
FB|FBgn0263977	173	Tim17b [Drosophila melanogaste	0.980	0.583	0.762	1.6e-38
FB|FBgn0020371	478	Tim17b2 "Translocase inner mem	0.990	0.213	0.647	4.6e-34
FB|FBgn0031164	185	CG1724 [Drosophila melanogaste	0.990	0.551	0.627	8.5e-33
FB|FBgn0038018	222	Tim17a1 "Tim17a1" [Drosophila	0.980	0.454	0.633	6e-32
FB|FBgn0037310	179	Tim17b1 "Tim17b1" [Drosophila	0.980	0.564	0.623	2.3e-30
ZFIN|ZDB-GENE-031030-6	201	timm17a "translocase of inner	0.980	0.502	0.633	2.3e-30
MGI|MGI:1343131	171	Timm17a "translocase of inner	0.980	0.590	0.623	3.8e-30
UNIPROTKB|G3N1S8	171	TIMM17A "Uncharacterized prote	0.980	0.590	0.623	4.9e-30
UNIPROTKB|E2R659	171	TIMM17A "Uncharacterized prote	0.980	0.590	0.633	4.9e-30
UNIPROTKB|Q99595	171	TIMM17A "Mitochondrial import	0.980	0.590	0.633	4.9e-30

FB|FBgn0263977 Tim17b [Drosophila melanogaster (taxid:7227)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 77/101 (76%), Positives = 86/101 (85%)

Query:     1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
             MG IGG +F  IKGFRNAPSG+NRR +G    IK +SP++AGNFAVWG MFSTIDC+LV+
Sbjct:    23 MGCIGGGVFQAIKGFRNAPSGLNRRLVGSIIAIKTRSPVIAGNFAVWGGMFSTIDCTLVH 82

Query:    61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
              RKKEDPWNSIISGAATGGILAARNGVPAMAGSA+IG   L
Sbjct:    83 FRKKEDPWNSIISGAATGGILAARNGVPAMAGSAIIGGVLL 123

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

FB|FBgn0020371 Tim17b2 "Translocase inner membrane 17" [Drosophila melanogaster (taxid:7227)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 66/102 (64%), Positives = 80/102 (78%)

Query:     1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
             MG +GG LF G+KGFRNAP G+ RR  G    IK KSP++ G+FA WGA+FS +DCSLV+
Sbjct:    23 MGCVGGGLFQGLKGFRNAPQGLGRRVAGSVAAIKTKSPVIGGSFAAWGAVFSIVDCSLVH 82

Query:    61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYLN 102
              R+KEDPWNSI+SGA TGGILA+RNG  AMAGSA+IG   L+
Sbjct:    83 FRQKEDPWNSIVSGAVTGGILASRNGAAAMAGSAIIGGVLLS 124

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

FB|FBgn0031164 CG1724 [Drosophila melanogaster (taxid:7227)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 64/102 (62%), Positives = 78/102 (76%)

Query:     1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
             MG  GG LF G+KGFRNAP G+ RRF G    +K +SP + GNFA WG +FS +DCSLV+
Sbjct:    23 MGCFGGGLFQGLKGFRNAPQGLKRRFAGGLAAVKSRSPTIGGNFAAWGCVFSIVDCSLVH 82

Query:    61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYLN 102
             +RKKEDPWNSI+SGA  GGIL++RNGV AM GSA+IG   L+
Sbjct:    83 LRKKEDPWNSIMSGAIAGGILSSRNGVAAMFGSAIIGGVLLS 124

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

FB|FBgn0038018 Tim17a1 "Tim17a1" [Drosophila melanogaster (taxid:7227)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 64/101 (63%), Positives = 81/101 (80%)

Query:     1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
             MG IGG+LF  +KGFRNAP+G+ RR  G    +K ++P +AG+FAVWGA FST+DC+LV+
Sbjct:    22 MGTIGGSLFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPSIAGSFAVWGATFSTVDCALVH 81

Query:    61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
              R++ED WNSI+SGAATGGILAARNG+ AMA SAL+G   L
Sbjct:    82 YRQREDAWNSILSGAATGGILAARNGIRAMANSALVGCLVL 122

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISS

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

FB|FBgn0037310 Tim17b1 "Tim17b1" [Drosophila melanogaster (taxid:7227)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 63/101 (62%), Positives = 74/101 (73%)

Query:     1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
             MG +GG  F  IKGFRNAPSG+  R  G    ++ +S ++ GNFAVWGA FS IDCSLVY
Sbjct:    23 MGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLVGGNFAVWGATFSAIDCSLVY 82

Query:    61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
              RKKEDPWN+IISGA TGGILAAR G+ +M  SAL+G   L
Sbjct:    83 FRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGALL 123

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

ZFIN|ZDB-GENE-031030-6 timm17a "translocase of inner mitochondrial membrane 17 homolog A (yeast)" [Danio rerio (taxid:7955)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 64/101 (63%), Positives = 73/101 (72%)

Query:     1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
             MG IGG +F  +KGFRN+PSGMN R  G  T I+ ++P L G+FAVWG +FS IDC LV 
Sbjct:    58 MGAIGGGIFQAVKGFRNSPSGMNHRMKGSLTAIRTRAPQLGGSFAVWGGLFSMIDCGLVK 117

Query:    61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
             VR KEDPWNSI SGA TG ILAARNG  AM GSA +G   L
Sbjct:   118 VRGKEDPWNSITSGAMTGAILAARNGPVAMVGSAAMGGILL 158

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1343131 Timm17a "translocase of inner mitochondrial membrane 17a" [Mus musculus (taxid:10090)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 63/101 (62%), Positives = 73/101 (72%)

Query:     1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
             MG IGG +F   KGFRN+P G+N R  G  T IK ++P L G+FAVWG +FSTIDCS+V 
Sbjct:    23 MGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCSMVQ 82

Query:    61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
             +R KEDPWNSI SGA TG ILAARNG  AM GSA +G   L
Sbjct:    83 IRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILL 123

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0031305 "integral to mitochondrial inner membrane" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|G3N1S8 TIMM17A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 63/101 (62%), Positives = 73/101 (72%)

Query:     1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
             MG IGG +F  IKGFRN+P G+N R  G  T IK ++P L G+FAVWG +FS IDCS+V 
Sbjct:    23 MGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQ 82

Query:    61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
             +R KEDPWNSI SGA TG ILAARNG  AM GSA +G   L
Sbjct:    83 IRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAVGGVLL 123

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2R659 TIMM17A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 64/101 (63%), Positives = 73/101 (72%)

Query:     1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
             MG IGG +F  IKGFRN+P G+N R  G  T IK ++P L G+FAVWG +FS IDCS+V 
Sbjct:    23 MGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQ 82

Query:    61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
             VR KEDPWNSI SGA TG ILAARNG  AM GSA +G   L
Sbjct:    83 VRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILL 123

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|Q99595 TIMM17A "Mitochondrial import inner membrane translocase subunit Tim17-A" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 64/101 (63%), Positives = 73/101 (72%)

Query:     1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
             MG IGG +F  IKGFRN+P G+N R  G  T IK ++P L G+FAVWG +FS IDCS+V 
Sbjct:    23 MGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQ 82

Query:    61 VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
             VR KEDPWNSI SGA TG ILAARNG  AM GSA +G   L
Sbjct:    83 VRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILL 123

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0031305 "integral to mitochondrial inner membrane" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99595	TI17A_HUMAN	No assigned EC number	0.6336	0.9805	0.5906	yes	N/A
Q9Z0V8	TI17A_MOUSE	No assigned EC number	0.6237	0.9805	0.5906	yes	N/A
O35092	TI17A_RAT	No assigned EC number	0.6138	0.9805	0.5906	yes	N/A
P87130	TIM17_SCHPO	No assigned EC number	0.5465	0.8155	0.5121	yes	N/A
P39515	TIM17_YEAST	No assigned EC number	0.5813	0.8155	0.5316	yes	N/A
Q9SP35	TI172_ARATH	No assigned EC number	0.5346	0.9611	0.4074	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	103
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	3e-40
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	8e-37
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	8e-25
COG5596	191	COG5596, TIM22, Mitochondrial import inner membran	3e-11
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	4e-07
COG5596	191	COG5596, TIM22, Mitochondrial import inner membran	4e-06

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score =  130 bits (329), Expect = 3e-40
 Identities = 59/101 (58%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGG++F   KGFRN+P G      G    IK ++P+L GNFAVWG +FSTIDC++V 
Sbjct: 23  MGTIGGSIFQAFKGFRNSPKGEKLV--GAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVA 80

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +RKKEDPWNSIISG  TG  LA R G  AM GSA++GA  L
Sbjct: 81  IRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACIL 121

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score =  121 bits (306), Expect = 8e-37
 Identities = 50/101 (49%), Positives = 68/101 (67%), Gaps = 2/101 (1%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVY 60
           MG IGG ++H +KG RN+P G   RF G    +++++PIL GNFA+WG +FST DC+L Y
Sbjct: 25  MGCIGGFIWHFLKGMRNSPKG--ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQY 82

Query: 61  VRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL 101
           +R KED WN+I SG  TGG+LA R G  +   +A+ G   L
Sbjct: 83  LRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILL 123

Length = 164

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score = 90.0 bits (224), Expect = 8e-25
 Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 2/101 (1%)

Query: 1   MGLIGGALFHGIKGFRNAP--SGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSL 58
           MG + G  F    G  NA     +  R  G+     ++ P    NFAV+G ++S I+C+L
Sbjct: 16  MGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNNFAVFGGLYSGIECAL 75

Query: 59  VYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAF 99
             +R KEDPWNSII+GA TG +L  R G  A A  A +GA 
Sbjct: 76  EKLRGKEDPWNSIIAGALTGAVLGLRGGPKAAAVGAAVGAA 116

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|227883 COG5596, TIM22, Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 1   MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFA-VWGAMFSTIDCSLV 59
              IG +   G+KGFR    G +  F            +L  NF  VWG +FSTIDC+  
Sbjct: 44  YSCIGKSALSGLKGFRL--GGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPF 101

Query: 60  YVRKKEDPWNSIISGAATGGILAARNGV 87
            ++ KE   N+   G  TG  L     +
Sbjct: 102 RLQLKEQLNNAGKRGFFTGKNLGVLGLI 129

Length = 191

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score = 44.8 bits (106), Expect = 4e-07
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 2   GLIGGALFHGIKGFRNAPSG--MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLV 59
           GL  GAL     G +   S      R   +   + ++ P       +   +++ I+  + 
Sbjct: 45  GLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIE 104

Query: 60  YVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGA 98
             R K D +NS+ +GA TG +  +  G+  MA S  +GA
Sbjct: 105 ATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGA 143

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

>gnl|CDD|227883 COG5596, TIM22, Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

 Score = 42.5 bits (100), Expect = 4e-06
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 36  KSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMA-GSA 94
           +      N  V G +++ I+  +  +R K D  N+I +GA TG  LA+  G  AM  G A
Sbjct: 115 RGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGA 174

Query: 95  LIGAF 99
              AF
Sbjct: 175 GFAAF 179

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PTZ00236	164	mitochondrial import inner membrane translocase su	99.97
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.97
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.97
KOG1652|consensus	183		99.95
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.89
KOG3324|consensus	206		99.86
KOG3225|consensus	168		99.76
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.44
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	98.26
KOG4608|consensus	270		97.96
KOG1398|consensus	460		93.42
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	88.66
KOG4096|consensus	75		85.21
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	82.54
PF12732	74	YtxH: YtxH-like protein; InterPro: IPR024623 This	82.02

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.97  E-value=8.3e-32  Score=190.33  Aligned_cols=100  Identities=50%  Similarity=0.952  Sum_probs=97.3

Q ss_pred             CchhHhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHH
Q psy7132           1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGI   80 (103)
Q Consensus         1 ~G~~~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~   80 (103)
                      ||++.|++|++++|+||+|.+  +|+++.++.+++|+|.++++|++|+++|+++||.++++|+|||+||++++|++||++
T Consensus        25 ~G~vgG~~~~~~~G~rnsp~g--~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~AG~~TGa~  102 (164)
T PTZ00236         25 MGCIGGFIWHFLKGMRNSPKG--ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGV  102 (164)
T ss_pred             HHHHHHHHHHHHHHHHhCCCc--chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence            689999999999999999977  899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcChHHHHHHHHHHHHhhc
Q psy7132          81 LAARNGVPAMAGSALIGAFYLN  102 (103)
Q Consensus        81 ~~~~~g~~~~~~~~~~g~~~~~  102 (103)
                      +++|.||++++.++++|+++++
T Consensus       103 l~~r~G~~~~~~~a~~Gg~~~~  124 (164)
T PTZ00236        103 LAIRGGWRSAVRNAIFGGILLG  124 (164)
T ss_pred             HHHhcChHHHHHHHHHHHHHHH
Confidence            9999999999999999999975

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.97  E-value=1.4e-31  Score=190.25  Aligned_cols=100  Identities=59%  Similarity=1.083  Sum_probs=97.2

Q ss_pred             CchhHhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHH
Q psy7132           1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGI   80 (103)
Q Consensus         1 ~G~~~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~   80 (103)
                      ||+++|++|++++|+||+|.+  +|+++.++++++|+|+++++|++|+++|+++||.++++|+|||+||++++|++||++
T Consensus        23 ~G~~~G~~~g~~~G~rnsp~g--~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~KeD~~NsiiAG~~TGa~  100 (170)
T TIGR00980        23 MGTIGGSIFQAFKGFRNSPKG--EKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAA  100 (170)
T ss_pred             HHHHHHHHHHHHHHhhcCCcc--chhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            689999999999999999976  899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcChHHHHHHHHHHHHhhc
Q psy7132          81 LAARNGVPAMAGSALIGAFYLN  102 (103)
Q Consensus        81 ~~~~~g~~~~~~~~~~g~~~~~  102 (103)
                      |+.|.|+++++.++++++++|+
T Consensus       101 l~~r~G~~a~~~~aa~gg~~la  122 (170)
T TIGR00980       101 LAVRGGPRAMRGSAILGACILA  122 (170)
T ss_pred             HHhccChHHHHHHHHHHHHHHH
Confidence            9999999999999999999986

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.97  E-value=6e-30  Score=178.77  Aligned_cols=102  Identities=25%  Similarity=0.378  Sum_probs=98.1

Q ss_pred             CchhHhhHHHHHHhhhhCCcc--chhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHH
Q psy7132           1 MGLIGGALFHGIKGFRNAPSG--MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATG   78 (103)
Q Consensus         1 ~G~~~G~~~g~~~g~~~~p~~--~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tG   78 (103)
                      ||++.|+++|+++|++++|.+  .|+|+++++|++.+++++++++|++++.+|+.+||.++++|+|||+||+++||++||
T Consensus        44 ~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TG  123 (149)
T TIGR00983        44 TGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTG  123 (149)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHH
Confidence            689999999999999999863  589999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcChHHHHHHHHHHHHhhc
Q psy7132          79 GILAARNGVPAMAGSALIGAFYLN  102 (103)
Q Consensus        79 a~~~~~~g~~~~~~~~~~g~~~~~  102 (103)
                      ++|++++||++++.++++|+++++
T Consensus       124 al~~~~~G~r~~~~g~~~G~~l~~  147 (149)
T TIGR00983       124 ALYKSTRGLRGMARSGALGATAAG  147 (149)
T ss_pred             HHHHhccChHHHHHHhHHHHHHhh
Confidence            999999999999999999998875

>KOG1652|consensus

Probab=99.95  E-value=3.9e-30  Score=182.79  Aligned_cols=100  Identities=61%  Similarity=1.068  Sum_probs=98.0

Q ss_pred             CchhHhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHH
Q psy7132           1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGI   80 (103)
Q Consensus         1 ~G~~~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~   80 (103)
                      ||++.|.+|++++|++|+|.+  .|+.+.++.++.|+|.++++|++|+++||.+||.+..+|+|||+||++++|++||.+
T Consensus        23 mg~igG~~f~~ikG~~nap~G--~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R~KeDpwNsivsGa~TGg~  100 (183)
T KOG1652|consen   23 MGTIGGSVFQLIKGFRNAPSG--ARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIRKKEDPWNSIVSGAATGGL  100 (183)
T ss_pred             hcccccceeeeeeeeecCCcc--cccccchhhhhccCcccccceeeeechhhHHHHHHHHHhcccchHHHHHHHhhccce
Confidence            799999999999999999998  799999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcChHHHHHHHHHHHHhhc
Q psy7132          81 LAARNGVPAMAGSALIGAFYLN  102 (103)
Q Consensus        81 ~~~~~g~~~~~~~~~~g~~~~~  102 (103)
                      +..|.|+++++.++++++++|+
T Consensus       101 La~r~g~~a~~~sa~~~g~~la  122 (183)
T KOG1652|consen  101 LAARGGPKAMLTSAITGGLLLA  122 (183)
T ss_pred             eeccccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999985

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.89  E-value=8.3e-23  Score=137.72  Aligned_cols=100  Identities=35%  Similarity=0.715  Sum_probs=85.3

Q ss_pred             chhHhhHHHHHHhhh----hCCc--cchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHH
Q psy7132           2 GLIGGALFHGIKGFR----NAPS--GMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGA   75 (103)
Q Consensus         2 G~~~G~~~g~~~g~~----~~p~--~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~   75 (103)
                      |.+.|.++|.+.+.+    ..++  ..+++++..++.+.+++++.+.+|+.++++|+.+||.+|++|+|||+||++++|+
T Consensus        13 g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k~D~~N~~~aG~   92 (128)
T PF02466_consen   13 GFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGKDDPWNSAIAGA   92 (128)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence            344555555555544    2222  2568999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcChHHHHHHHHHHHHhh
Q psy7132          76 ATGGILAARNGVPAMAGSALIGAFYL  101 (103)
Q Consensus        76 ~tGa~~~~~~g~~~~~~~~~~g~~~~  101 (103)
                      +||++++.+.+++.++.++++++++.
T Consensus        93 ~aGa~~~~~~g~~~~~~~~~~~a~~~  118 (128)
T PF02466_consen   93 AAGAVLGLRSGPRGMASGAALGAAFA  118 (128)
T ss_pred             HHHHHHHhccChHHHHHHHHHHHHHH
Confidence            99999999999999999988888764

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>KOG3324|consensus

Probab=99.86  E-value=9.6e-22  Score=141.68  Aligned_cols=100  Identities=24%  Similarity=0.368  Sum_probs=94.9

Q ss_pred             chhHhhHHHHHHhhhhCCcc--chhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHH
Q psy7132           2 GLIGGALFHGIKGFRNAPSG--MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGG   79 (103)
Q Consensus         2 G~~~G~~~g~~~g~~~~p~~--~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa   79 (103)
                      |+..|+.+|++.|+++.|..  .|.|++.++|++.++++.++++.++++.+|+.+|..++..|+|||++|++.||++||+
T Consensus        88 G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGa  167 (206)
T KOG3324|consen   88 GSAIGAFNGLILGLKNTENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGA  167 (206)
T ss_pred             chhhhhHHHHHHhhhcCCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhh
Confidence            67899999999999998874  6899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhcChHHHHHHHHHHHHhh
Q psy7132          80 ILAARNGVPAMAGSALIGAFYL  101 (103)
Q Consensus        80 ~~~~~~g~~~~~~~~~~g~~~~  101 (103)
                      +|++.+|+|++..++.+++++.
T Consensus       168 lyrs~~Glr~~av~ga~g~~aa  189 (206)
T KOG3324|consen  168 LYRSTRGLRAAAVAGAVGGTAA  189 (206)
T ss_pred             hhhcCCCchHHHHHHHHHHHHH
Confidence            9999999999999888887754

>KOG3225|consensus

Probab=99.76  E-value=2.3e-19  Score=125.76  Aligned_cols=95  Identities=29%  Similarity=0.352  Sum_probs=82.2

Q ss_pred             CchhHhhHHHHHHhhhh----CCcc-chhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHH
Q psy7132           1 MGLIGGALFHGIKGFRN----APSG-MNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGA   75 (103)
Q Consensus         1 ~G~~~G~~~g~~~g~~~----~p~~-~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~   75 (103)
                      +|...|.++|++.+..+    -|+. .+.-+.+.++.+.+|...++++|+.+|.+|+++||++|++|.|+||+|++++||
T Consensus        52 ~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~  131 (168)
T KOG3225|consen   52 TGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGC  131 (168)
T ss_pred             cccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeee
Confidence            57788999998888766    2421 234445668999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcChHHHHHHHH
Q psy7132          76 ATGGILAARNGVPAMAGSAL   95 (103)
Q Consensus        76 ~tGa~~~~~~g~~~~~~~~~   95 (103)
                      +||+.++.|.||++.+.++.
T Consensus       132 vtGg~l~~raGp~a~~~G~a  151 (168)
T KOG3225|consen  132 VTGGSLGYRAGPKAAAIGCA  151 (168)
T ss_pred             eeccchhhcccchhhhhchh
Confidence            99999999999999888544

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=4.7e-15  Score=106.32  Aligned_cols=87  Identities=23%  Similarity=0.316  Sum_probs=76.1

Q ss_pred             HhhHHHHHHhhhhCCc--cchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhh
Q psy7132           5 GGALFHGIKGFRNAPS--GMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILA   82 (103)
Q Consensus         5 ~G~~~g~~~g~~~~p~--~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~   82 (103)
                      +|++||   ++++.+.  +.++|++.+++++.+|++.+++++++++.+|...||.++.+|+|+|+.|++.+|..||+.++
T Consensus        85 fg~vwG---gl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~  161 (191)
T COG5596          85 FGGVWG---GLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALA  161 (191)
T ss_pred             cccccc---ceeeccccchHHHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHH
Confidence            445555   4443332  26799999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcChHHHHHHH
Q psy7132          83 ARNGVPAMAGSA   94 (103)
Q Consensus        83 ~~~g~~~~~~~~   94 (103)
                      .+.++|++..+.
T Consensus       162 ~~~g~qa~~~~~  173 (191)
T COG5596         162 SSAGPQAMPMGG  173 (191)
T ss_pred             hhccccccccCc
Confidence            999999988743

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=2.3e-08  Score=72.04  Aligned_cols=86  Identities=31%  Similarity=0.408  Sum_probs=77.6

Q ss_pred             CchhHhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHH-HHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHH
Q psy7132           1 MGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFA-VWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGG   79 (103)
Q Consensus         1 ~G~~~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a-~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa   79 (103)
                      |+++...++.-++|.+..|+.  ++..+.+..-+.+.+-.+.+|+ +||++|+.++|..+++|.|+|+||....|+.||.
T Consensus        44 ~~~i~k~~~s~l~G~~~g~~~--g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~  121 (191)
T COG5596          44 YSCIGKSALSGLKGFRLGGPS--GGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGK  121 (191)
T ss_pred             hcchhhhhhhccccccccccc--ccchhhcccccccccccCccccccccceeeccccchHHHHHhhcccccccccccccc
Confidence            568899999999999999977  7777888888888999999999 8999999999999999999999999999999999


Q ss_pred             HhhhhcChH
Q psy7132          80 ILAARNGVP   88 (103)
Q Consensus        80 ~~~~~~g~~   88 (103)
                      .++.+....
T Consensus       122 n~GvlGl~y  130 (191)
T COG5596         122 NLGVLGLIY  130 (191)
T ss_pred             ccceeeeec
Confidence            888776533

>KOG4608|consensus

Probab=97.96  E-value=5.8e-07  Score=67.24  Aligned_cols=69  Identities=22%  Similarity=0.307  Sum_probs=58.7

Q ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHH
Q psy7132          31 TTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAF   99 (103)
Q Consensus        31 ~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~~~~g~~~~~~~~~~g~~   99 (103)
                      +.+.+-+-+++-..|++...|-++...+..+|+|+|.||-+.+|.+||++|++.-|++-++.+.++|++
T Consensus       125 r~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa~vilG~~  193 (270)
T KOG4608|consen  125 RGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAAGVILGAL  193 (270)
T ss_pred             HHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhhcceeehh
Confidence            336667777788888999999999999999999999999999999999999999987777666555543

>KOG1398|consensus

Probab=93.42  E-value=0.13  Score=41.44  Aligned_cols=49  Identities=18%  Similarity=0.285  Sum_probs=42.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhhh
Q psy7132          35 QKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAA   83 (103)
Q Consensus        35 ~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~~   83 (103)
                      +..-+++.-++.+-++|..+.|.+.+++.+||..|+++||.+++-.+..
T Consensus       297 renlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmf  345 (460)
T KOG1398|consen  297 RENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMF  345 (460)
T ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeee
Confidence            3455677788999999999999999999999999999999998865443

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=88.66  E-value=0.44  Score=29.25  Aligned_cols=50  Identities=28%  Similarity=0.339  Sum_probs=28.9

Q ss_pred             chhHhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q psy7132           2 GLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDC   56 (103)
Q Consensus         2 G~~~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~   56 (103)
                      |.+.|.++|.++.+|.-+     +-++.++.+.+.....+.+|+.+=.+=+.++|
T Consensus        18 G~~~G~l~G~~~~~r~g~-----~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IRc   67 (67)
T PF10247_consen   18 GGAFGALFGTFSAFRYGA-----RGRGLMRTLGKYMLGSGATFGFFMSIGSVIRC   67 (67)
T ss_pred             HhhhhhhhhhHHHhccCC-----CCcchHhHHhHHHhcchhHHHHHHhhhccccC
Confidence            334444555555555543     33456666777777777788776655544443

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>KOG4096|consensus

Probab=85.21  E-value=0.64  Score=28.97  Aligned_cols=48  Identities=35%  Similarity=0.589  Sum_probs=32.5

Q ss_pred             HhhHHHHHHhhhhCCccchhhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhH
Q psy7132           5 GGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCS   57 (103)
Q Consensus         5 ~G~~~g~~~g~~~~p~~~~~r~~~~l~~~~~~~~~~a~~~a~~g~~fs~~~~~   57 (103)
                      .|.+||-++.+|.-|.+     ++.++.+.+.....+.+|+.+-++=+.++|.
T Consensus        25 ~G~lfGgf~~lR~g~~g-----~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~   72 (75)
T KOG4096|consen   25 TGALFGGFAALRYGPRG-----RGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG   72 (75)
T ss_pred             hhhhccchhheeecCCh-----hHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence            34445555555665544     4556667777788888999888888877775

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=82.54  E-value=6.6  Score=25.75  Aligned_cols=73  Identities=11%  Similarity=-0.023  Sum_probs=43.0

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHhHhhhhhccCChHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhh
Q psy7132          29 MTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGAFYL  101 (103)
Q Consensus        29 ~l~~~~~~~~~~a~~~a~~g~~fs~~~~~~~~~R~k~D~~N~~~aG~~tGa~~~~~~g~~~~~~~~~~g~~~~  101 (103)
                      .++.+.++..+.+..++..-+.|.++-+.++..=++-=-.|-.+=..++|++-+.--+.+.-....+.+++..
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~  114 (128)
T PF02466_consen   42 RLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGKDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALG  114 (128)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            4455555555555567777777777776666655543345666666666666666555544444555554443

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria

Probab=82.02  E-value=4.1  Score=24.68  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=26.2

Q ss_pred             chhHhhHHHHHHhhhhCCc-c--chhhhhhHHHHHhhh
Q psy7132           2 GLIGGALFHGIKGFRNAPS-G--MNRRFLGMTTTIKQK   36 (103)
Q Consensus         2 G~~~G~~~g~~~g~~~~p~-~--~~~r~~~~l~~~~~~   36 (103)
                      |++.|++.|..-++..+|. +  +|+++....+.+..+
T Consensus         4 g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~   41 (74)
T PF12732_consen    4 GFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKDK   41 (74)
T ss_pred             HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence            7899999999999999997 4  456666655554443

Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00