Psyllid ID: psy7139

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870------
Protein Sequence
MGLHCELFASITMSDKTFSRAIVLGRKDGRMEESLCPPSNQQCIEMSDETLGTTEETVNPPIDQQCNPMAEETLGRMEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIEMTEETLGRTEESLCPPSNQQCIEMSVETLGTTEETVNPPSDQQCIEMSEETLSQPSNQQCIEMTEETLGRMEESPCPPSNQQCIEMSDETLGTTEETVNPPSDQQCIEMSEETLSQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEMTEETLGRTEETVNPPTDQQCIEMAEEILTPPINQQWSQMSEETLSQPSNQQFIKMTEDTLYERTVQDSKVVIAHAKLTEDELCPITQAIYMGSSMQSLKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFPDHPRIKENNTETERELVRQNKKKETLCPNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQRIKMTEETLSTTEEILSPQSNKQSIEMTKETLDLTSNRQCNQMSEETVCLPSNQQCIEMTEETLGRMEESLCPPSNQQCIEISDETLGTTEETVNPPTDQQCNQMTEETLGRTEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE
Secondary Structure (PSIPRED)
ccccccccEEEEccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccEEEEEcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccEEEEcHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccEEEEEEccccccEEEEcccccccccHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEHEEEEEEEcccccEEEEEccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEEccEEEEEcHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHcccccccccccccEEEEccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccHHHHccEEEEcccccccEEEEEcHHHccccHHHHHHHHHHHcccccHHHccHccc
Coil and Loop (DISEMBL)
MGLHCELFASITMSDKTFSRAIVLgrkdgrmeeslcppsnqqciemsdetlgtteetvnppidqqcnpmaeetlgrmeeslcppsnqqciemsdetlgtteetvnpptdqQCIEMAEEILSQPLNQQWSQmseetlsqppnqqcIEMTEetlgrteeslcppsnqqcIEMSVEtlgtteetvnppsdqqciemseetlsqpsnqQCIEMTEEtlgrmeespcppsnqqciemsdetlgtteetvnppsdqqciemseetlsqpsnqQCNQMAEETLGRmeeslcppsnqqcIEMTEetlgrteetvnpptdqqCIEMAEeiltppinqqwsqmseetlsqpsnQQFIKMTEDTLYERTVQDSKVVIAHAKltedelcpitqaiymgssmQSLKLMEIPQSLISEIQQGnrvlfrgdigdppvlctqrqtfqvkeaetsnsltlirglyfpdhprikennTETERELVRQNkkketlcpnqQCIEMAeetlsqpsiqqdnqmdkeilspppsnqqriKMTEETLSTTEeilspqsnkqSIEMTKETLDLTsnrqcnqmseetvclpsnqqCIEMTEETLGrmeeslcppsnqqcieisdetlgtteetvnpptdqqcnqmteetlgrteeslcppsnqqciemsdetlgtteetvnpptdqqcieisdetlgtteetvnpptdqqcieikrfdransslgfrfllfpgyirtldhdyNFRMLSHILNlvdsnswsadqidrtetkvtlealvPAEIVDFLFDHYMvestdktnqngepyycliEDKICRVIGEAllrptekfILNDFLTVWQASVPEGLKTNLKQLEGLAfvrqsskpvvvqyfpevnlseDIKTRIDQLFQVQdkwtledirpyie
Flexible Loop (DISEMBL)
MGLHCELFAsitmsdktfSRAIVLGRkdgrmeeslcppsnqqcIEMSDETLGTTEETVNPPIDQQCNPMAEETLGRMEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIEMTEETLGRTEESLCPPSNQQCIEMSVETLGTTEETVNPPSDQQCIEMSeetlsqpsnqQCIEMTEETLGRMEESPCPPSNQQCIEMSDETLGTTEETVNPPSDQQCIEMSEetlsqpsnqQCNQMAEETLGRMEESLCPPSNQQCIEMTEEtlgrteetvnPPTDQQCIEMAEEILTPPINQQWSQMSEETLSQPSNQQFIKMTEDTLYERTVQDSKVVIAHAkltedelcPITQAIYMGSSMQSLKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTFqvkeaetsnsltlirglyfpdhprikenntETERELVrqnkkketlcpNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQRIKMTEETLstteeilspqsnkqsIEMTKETLDLTSNRQCNQMseetvclpsnqQCIEMTEETLGRMEESLCPPSNQQCIEISDETLGTTeetvnpptdqqcNQMTEETLGRTEESLCPPSNQQCIEMSDETLGTTeetvnpptdqqcIEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVESTdktnqngepYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLfqvqdkwtledirpyie
Low Complexity Region (SEG)
MGLHCELFASITMSDKTFSRAIVLGRKDGRMEESLCPPSNQQCIEMSDETLGTTEETVNPPIDQQCNPMAEETLGRMEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIEMTEETLGRTEESLCPPSNQQCIEMSVETLGTTEETVNPPSDQQCIEMSEETLSQPSNQQCIEMTEETLGRMEESPCPPSNQQCIEMSDETLGTTEETVNPPSDQQCIEMSEETLSQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEMTEETLGRTEETVNPPTDQQCIEMAEEILTPPINQQWSQMSEETLSQPSNQQFIKMTEDTLYERTVQDSKVVIAHAKLTEDELCPITQAIYMGSSMQSLKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFPDHPRIKENNTETERELVRQNKKKETLCPNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQRIKMteetlstteeilsPQSNKQSIEMTKETLDLTSNRQCNQMSEETVCLPSNQQCIEMTEETLGRMEESLCPPSNQQCIEISDETLGTTEETVNPPTDQQCNQMTEETLGRTEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE
Disordered region (IsUnstruct)
***HCELFASITMSDKTFSRAIVL************************************************************************************************************************************************************************************************************************************************************************************************************************************MTEDTLYERTVQDSKVVIAHAKLTEDELCPITQAIYMGSSMQSLKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFP*****************************************************************************************************************************************************************************************************************************************QCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIR****
Disordered Region (DISOPRED)
*GLHCELFASITMSDKTF*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE
Disordered Region (DISEMBL)
MGLHCELFASITMSDKTFSRAIVLGRKDGRMEESLCPPSNQQCIEMSDETLGTTEETVNPPIDQQCNPMAEETLGRMEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEMAEEILSQPLNQ*************PNQQCIEMTEETLGRTEESLCPPSNQQCIEMSVETLGTTEETVNPPSDQQCIEMSEETLSQPSNQQCIEMTEET************NQQCIEMSDETLGTTEETVNPPSDQQCIEMSE***************EETLGRMEESLCPPSNQQCIEMTEETLGRTEETVNPPTDQQCIEMAEEILTPPINQQW************NQQFIKMTEDTLYERTVQDSKVVIAHAKLTEDELCPITQAIYMGSSMQSLKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFPDHPRIKEN*************KKETLCPNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQRIKMTEETLSTTEEILSPQSNKQSIEMTKETLDLTSNRQCNQMSEETVCLPSNQQCIEMTEETLGRMEESLCPPSNQQCIEISDETLGTTEETVNPPTDQQCNQMTEETLGRTEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE
Disordered Region (DISPRO)
*GLHCELFASITMSDKTFSRAIVLGRKDGRMEES*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLHCELFASITMSDKTFSRAIVLGRKDGRMEESLCPPSNQQCIEMSDETLGTTEETVNPPIDQQCNPMAEETLGRMEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIEMTEETLGRTEESLCPPSNQQCIEMSVETLGTTEETVNPPSDQQCIEMSEETLSQPSNQQCIEMTEETLGRMEESPCPPSNQQCIEMSDETLGTTEETVNPPSDQQCIEMSEETLSQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEMTEETLGRTEETVNPPTDQQCIEMAEEILTPPINQQWSQMSEETLSQPSNQQFIKMTEDTLYERTVQDSKVVIAHAKLTEDELCPITQAIYMGSSMQSLKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFPDHPRIKENNTETERELVRQNKKKETLCPNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQRIKMTEETLSTTEEILSPQSNKQSIEMTKETLDLTSNRQCNQMSEETVCLPSNQQCIEMTEETLGRMEESLCPPSNQQCIEISDETLGTTEETVNPPTDQQCNQMTEETLGRTEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	876	2.2.26 [Sep-21-2011]
Q14AI0	399	Sister chromatid cohesion	yes	N/A	0.189	0.416	0.417	3e-29
Q66I84	391	Sister chromatid cohesion	yes	N/A	0.190	0.427	0.4	4e-29
Q9BVC3	393	Sister chromatid cohesion	yes	N/A	0.189	0.422	0.405	5e-28
Q6GL75	391	Sister chromatid cohesion	yes	N/A	0.244	0.547	0.346	3e-27
Q6GMB0	390	Sister chromatid cohesion	N/A	N/A	0.189	0.425	0.382	1e-25
D3YVF0	745	A-kinase anchor protein 5	no	N/A	0.317	0.373	0.244	5e-07
Q55BA5	376	Probable sister chromatid	yes	N/A	0.196	0.457	0.231	0.0003
P24587	714	A-kinase anchor protein 5	no	N/A	0.295	0.362	0.217	0.0006

>sp|Q14AI0|DCC1_MOUSE Sister chromatid cohesion protein DCC1 OS=Mus musculus GN=DSCC1 PE=2 SV=1

 Score =  130 bits (328), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 4/170 (2%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           GY R L+ DY  ++L+H+  LVDS SWS D++  T     L  L P E+++     Y   
Sbjct: 199 GYWRILEFDYEIKLLNHVTQLVDSESWSLDRVPLTVCLQELGPLEPEEMIEHCLKCYGKR 258

Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
             DK +     Y+ L  DKICRV  E LL+   KF L +F  VWQ SVPEG+ T L QL+
Sbjct: 259 YVDKDD----VYFELDADKICRVTAEMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLK 314

Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           GLA V ++S+P ++      +L E  + R + LF +++KWT EDI PYI+
Sbjct: 315 GLALVDRNSRPEIIFLLKVDDLPEGTQDRFNSLFSLREKWTEEDITPYIQ 364

Loads PCNA onto primed templates regulating velocity, spacing and restart activity of replication forks. May couple DNA replication to sister chromatid cohesion through regulation of the acetylation of the cohesin subunit SMC3.
Mus musculus (taxid: 10090)

>sp|Q66I84|DCC1_DANRE Sister chromatid cohesion protein DCC1 OS=Danio rerio GN=dscc1 PE=2 SV=1

 Score =  130 bits (327), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 3/170 (1%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           G+ R LD DY  ++L H+  LVDS SWS  ++  +     L +L P  +++   + Y   
Sbjct: 189 GFWRILDFDYEMKLLGHVTQLVDSESWSFSKVPLSVCLEELGSLEPKAMIEHCLNCYGRR 248

Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
            +D+ NQ     Y L EDK+CR   + LL+   KF L++F  VWQ SVPEG+ T L QL 
Sbjct: 249 HSDEDNQ---VMYALDEDKVCRATAQLLLQNAVKFNLSEFQEVWQQSVPEGMGTRLDQLR 305

Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           GLA + +SSKP  +      +L ED   R + LF +++KWT +DI PYI+
Sbjct: 306 GLALIDRSSKPETISLLRVEDLPEDTLERFNSLFSLREKWTQDDIEPYIQ 355

Loads pcna onto primed templates regulating velocity, spacing and restart activity of replication forks. May couple DNA replication to sister chromatid cohesion.

Danio rerio (taxid: 7955)

>sp|Q9BVC3|DCC1_HUMAN Sister chromatid cohesion protein DCC1 OS=Homo sapiens GN=DSCC1 PE=1 SV=2

 Score =  127 bits (318), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 4/170 (2%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           GY R L+ DY  ++L+H+  LVDS SWS  ++        L  L P E+++     Y  +
Sbjct: 193 GYWRILEFDYEMKLLNHVTQLVDSESWSFGKVPLNTCLQELGPLEPEEMIEHCLKCYGKK 252

Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
             D+    GE Y+ L  DKICR     LL+   KF L +F  VWQ SVPEG+ T+L QL+
Sbjct: 253 YVDE----GEVYFELDADKICRAAARMLLQNAVKFNLAEFQEVWQQSVPEGMVTSLDQLK 308

Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           GLA V + S+P ++      +L ED + R + LF +++KWT EDI PYI+
Sbjct: 309 GLALVDRHSRPEIIFLLKVDDLPEDNQERFNSLFSLREKWTEEDIAPYIQ 358

Loads PCNA onto primed templates regulating velocity, spacing and restart activity of replication forks. May couple DNA replication to sister chromatid cohesion through regulation of the acetylation of the cohesin subunit SMC3.

Homo sapiens (taxid: 9606)

>sp|Q6GL75|DCC1_XENTR Sister chromatid cohesion protein DCC1 OS=Xenopus tropicalis GN=dscc1 PE=2 SV=1

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 14/228 (6%)

Query: 651 EETVNPPTDQQCIEISDETLGTTEETVN--PPTDQQCIEIKRFDRANSSLGFRFLLFPGY 708
           E T N P +++  E  D +L TTE+ +N    ++++ ++  +   A S          G+
Sbjct: 141 ENTYNGPENER--ESQDNSLHTTEDLLNMIQASNEELVDHLKAIHACS--------INGF 190

Query: 709 IRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVEST 768
            R LD DY  ++L+HI  L+DS SWS  ++        L +L P E+++     Y     
Sbjct: 191 WRLLDFDYEMKLLNHITQLIDSESWSFSKVPLPVCLQELRSLEPEEMIEHCLTCYGKRLI 250

Query: 769 DKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGL 828
           D+    G  ++ L EDKICR     LL+   KF L +F  VWQ SVPEG+ T L QL+GL
Sbjct: 251 DEGT--GGDFFALDEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPEGMNTRLDQLKGL 308

Query: 829 AFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           A V ++S+P  +      +L ED + R + LF +++KW   DI PYI+
Sbjct: 309 ALVDRTSRPETIFLLKTEDLPEDTQERFNTLFGMREKWAEADIAPYIK 356

Loads pcna onto primed templates regulating velocity, spacing and restart activity of replication forks. May couple DNA replication to sister chromatid cohesion.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GMB0|DCC1_XENLA Sister chromatid cohesion protein DCC1 OS=Xenopus laevis GN=dscc1 PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 95/170 (55%), Gaps = 4/170 (2%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           G  R LD DY  ++L+HI  L+DS SWS  ++        L +L P E+++    H +  
Sbjct: 190 GIWRLLDFDYEMKLLNHITQLIDSESWSFSKVPLQVCLQELRSLEPEEMIE----HCLTC 245

Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
              +  + G   + L EDKICR     LL+   KF L +F  VWQ SVP+G+ T L QL+
Sbjct: 246 YGKRLMEEGGDCFALDEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPDGMNTRLDQLK 305

Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           GLA V ++S+P  +      +L ED + R + LF +++KWT  DI PYI+
Sbjct: 306 GLALVDRTSRPETIFLLQTEDLPEDTQERFNTLFGMREKWTEADIAPYIQ 355

Loads pcna onto primed templates regulating velocity, spacing and restart activity of replication forks. May couple DNA replication to sister chromatid cohesion.

Xenopus laevis (taxid: 8355)

>sp|D3YVF0|AKAP5_MOUSE A-kinase anchor protein 5 OS=Mus musculus GN=Akap5 PE=3 SV=2

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 140/315 (44%), Gaps = 37/315 (11%)

Query: 70  AEETLGRMEESLCPPSNQQCIEMSDE-TLGTTEETVNPPTDQQCIEMAEEILSQPLNQQW 128
            E  LG+ EE+    ++++ +  + E T G  EE      + Q  E     LSQ      
Sbjct: 300 GETALGQAEEAAVGQADKRALSQAGEATAGHPEEATVIQAESQAKEGK---LSQAEETTV 356

Query: 129 SQMSEETLSQPPNQQCIEMTEETLGRTEESLCPPSNQQCIEMSVE-TLGTTEE-TVNPPS 186
           +Q  E  LSQ    +  +  + T+G+ EE+    + +  ++ + E T+G  EE TV    
Sbjct: 357 AQAKETVLSQAKEGELSQAKKATVGQAEEATIDHTEKVTVDQAEETTVGQAEEATVGQAG 416

Query: 187 DQQCIEMSEETLSQPSNQQCIEMTEE-TLGRMEESPCPPSNQQCIEMSDE-TLGTTEETV 244
           +    +  E T+   + +  ++  EE T+G+ EE+    + +  ++ ++E T+G  EE  
Sbjct: 417 EAILSQAKEATVVGQAEEATVDRAEEATVGQAEEATVGHTEKVTVDQAEEATVGQAEEAT 476

Query: 245 NPPSDQQCIEMSEETLSQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEMTEE-TLGRTE 303
              +++  ++ +E    +P+     Q  E T+G+ EE+    + +  ++  EE T+G+ E
Sbjct: 477 VGQAEEATVDWAE----KPT---VGQAEEATVGQAEEATVGHTEKVTVDQAEEATVGQAE 529

Query: 304 ETVNPPTDQQCIEMAEEILTPPINQQWSQMSEETLSQPSNQQFIKMTEDTLYERTV---- 359
           E     T++  ++ AEE           Q  E T+ Q       K+T D   E TV    
Sbjct: 530 EATVGHTEKVTVDHAEEATV-------GQAEEATVGQAE-----KVTVDHAEEATVGQAE 577

Query: 360 -----QDSKVVIAHA 369
                Q  KV + HA
Sbjct: 578 EATVGQAEKVTVDHA 592

May anchor the PKA kinase to cytoskeletal and/or organelle-associated proteins, targeting the signal carried by cAMP to specific intracellular effectors.

Mus musculus (taxid: 10090)

>sp|Q55BA5|DCC1_DICDI Probable sister chromatid cohesion protein DCC1 OS=Dictyostelium discoideum GN=DDB_G0271400 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 22/194 (11%)

Query: 703 LLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDH 762
           L++      L  +Y F++L  IL+     +W  D I   +    + A  P  I+      
Sbjct: 152 LIYKNRYIVLSENYEFKILELILSEATIGAWKLDNIPIDKCIENIRA--PEFIIKHCLQL 209

Query: 763 YMVEST-------------DKTNQNGEPYYCLIE-DKICRVIGEALLRPTEK--FILNDF 806
           Y  + +                + N +   C ++ +K+C    + LL  + K      DF
Sbjct: 210 YSKQKSPTNSGGGGEEIKGGGGDDNNDENICSLDFNKVCIFRAKQLLTLSNKSNMKFEDF 269

Query: 807 LTVWQASVPEGLKTNLKQLEGLAFVRQSS----KPVVVQYFPEVNLSEDIKTRIDQLFQV 862
           +  W+ ++P  ++ N   L+G+A +  SS    K   V++  E  L    K R  +LFQ+
Sbjct: 270 MDNWKDTLPIEIQPNFSMLKGIAILIPSSSTNPKEKSVKFINESILPTIPKARFKELFQI 329

Query: 863 QDKWTLEDIRPYIE 876
             +W+++DI P+I+
Sbjct: 330 STRWSIDDIEPFIK 343

Loads PCNA onto primed templates regulating velocity, spacing and restart activity of replication forks. May couple DNA replication to sister chromatid cohesion.

Dictyostelium discoideum (taxid: 44689)

>sp|P24587|AKAP5_RAT A-kinase anchor protein 5 OS=Rattus norvegicus GN=Akap5 PE=2 SV=2

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 30/289 (10%)

Query: 25  GRKDGRMEESLCPPSNQQCIEMSDETLGTTEETVN-PPIDQQCNPMAEE-TLGRMEESLC 82
           G+ DGR + +     + +        LG  EE  +    D+     AEE T+G  EE+  
Sbjct: 285 GKDDGRRKTAAEEKKSGET------ALGQAEEASSVSQADKSVLSQAEEATVGHTEEATV 338

Query: 83  PPSNQQCIEMSDETLGTTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPNQ 142
             +  Q  E     L   EE           +  E +LSQ    + SQ+ E  +SQ    
Sbjct: 339 IQAQSQAKEGK---LSQAEEAT-------VAQAKETVLSQAEEVKLSQIEEPAISQAKKA 388

Query: 143 QCIEMTEETLGRTEESLCPPSNQQCIEMSVE-TLGTTEETVNPPSDQQCIEMSEE-TLSQ 200
              +  E  + + EE++   + +  +  + E T+G  E+T    +++  +  +EE T+ Q
Sbjct: 389 TVGQAKEAYVSQAEEAIVGHTEKATMGQAEEATVGHIEKTTVGQAEEATVGQAEEATVGQ 448

Query: 201 PSNQQCIEMTEETLGRMEESPCPPSNQQCI-EMSDETLGTTEETVNPPSDQQCIEMSEE- 258
                  +  E T+G+ EE+    + +  +  +   T+G  EE +   +++  +  +EE 
Sbjct: 449 AEEATVGQAEEATVGQAEEATVGQAGEATVSHIEKTTVGQAEEAIVGQAEEATVGQAEEA 508

Query: 259 --------TLSQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEMTEETL 299
                   T+ Q      +Q  E T+G+ EE+    + +  +   EE +
Sbjct: 509 TVGQAEEATVGQAEEATVDQAEEATVGQAEEATVGQAGEAAVGQAEEAI 557

May anchor the PKA kinase to cytoskeletal and/or organelle-associated proteins, targeting the signal carried by cAMP to specific intracellular effectors.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	876
193697430	397	PREDICTED: sister chromatid cohesion pro	0.190	0.420	0.467	1e-31
357611579	347	hypothetical protein KGM_20082 [Danaus p	0.189	0.478	0.426	1e-30
390365035	214	PREDICTED: sister chromatid cohesion pro	0.192	0.789	0.443	2e-30
326918051	358	PREDICTED: sister chromatid cohesion pro	0.189	0.463	0.405	6e-29
332376430	393	unknown [Dendroctonus ponderosae]	0.190	0.424	0.376	2e-28
149066381	401	similar to hypothetical protein MGC5528	0.189	0.413	0.417	2e-28
62652428	408	PREDICTED: sister chromatid cohesion pro	0.189	0.406	0.417	3e-28
301780318	388	PREDICTED: sister chromatid cohesion pro	0.189	0.427	0.417	3e-28
118087340	389	PREDICTED: sister chromatid cohesion pro	0.189	0.426	0.4	5e-28
270011205	359	hypothetical protein TcasGA2_TC030592 [T	0.190	0.465	0.411	6e-28

>gi|193697430|ref|XP_001952730.1| PREDICTED: sister chromatid cohesion protein DCC1-like [Acyrthosiphon pisum]

 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 104/171 (60%), Gaps = 4/171 (2%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           G  R LD +Y  R LS +LNL+D  SW  + I   ET   L  L+P  I+  + D Y   
Sbjct: 193 GNWRVLDFEYECRALSFLLNLIDEQSWPYNTIPMDETLNILGELLPPVILQHIIDQY--- 249

Query: 767 STDKTNQN-GEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQL 825
           ST   + N  + +  LIEDK+CR +   LLRP +KF L DF T WQ SVPEG+ TNLKQL
Sbjct: 250 STWCVSSNLSQTHRSLIEDKVCRFMAVGLLRPCDKFNLTDFKTAWQGSVPEGMITNLKQL 309

Query: 826 EGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           +G   V QSS P  + YF E +L +DI  RI  LFQV++KWT  +I+P++E
Sbjct: 310 DGTVLVDQSSHPQTICYFNEQDLPDDILERIVHLFQVRNKWTFNEIQPFLE 360

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611579|gb|EHJ67553.1| hypothetical protein KGM_20082 [Danaus plexippus]

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 105/169 (62%), Gaps = 3/169 (1%)

Query: 708 YIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVES 767
           + R LD DY FR+LS++L+L++ NSW  ++I R  T  +L+ LVPA I++ +F  Y +ES
Sbjct: 148 HYRLLDFDYEFRILSYMLDLIEENSWPLNKISREVTLDSLKDLVPACILEAMFGFYTMES 207

Query: 768 TDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEG 827
            +   + G  YY   EDK+CR +   LL+   KF L +F+  W+ SVPEG+ T+   L G
Sbjct: 208 VE---EGGTQYYQYKEDKVCRFLARVLLKSAGKFNLVEFMQAWRDSVPEGMITHKSMLAG 264

Query: 828 LAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           +A   +SS+P V+  F   +L ED+  R   LFQ + KWTL +I PYIE
Sbjct: 265 IAITDESSQPPVIWGFSASDLPEDLNQRFKILFQAKPKWTLSEISPYIE 313

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390365035|ref|XP_001194603.2| PREDICTED: sister chromatid cohesion protein DCC1-like [Strongylocentrotus purpuratus]

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 110/178 (61%), Gaps = 9/178 (5%)

Query: 704 LFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHY 763
           L  G+ R LD DY  ++L+HIL+LV  NSWS D++   ET  TLE L P  I++    H 
Sbjct: 5   LIDGHWRVLDFDYESQVLTHILSLVQENSWSYDEVPLEETLSTLENLEPRPILE----HC 60

Query: 764 MV---ESTDKTNQNG--EPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGL 818
           +    + T   N +G  E  Y L  DK+CR+  E LLRP +KF L +FL VWQ SVPEG+
Sbjct: 61  LKCCGDFTRGKNDDGSEEAMYSLDPDKVCRLFAEMLLRPADKFNLTEFLEVWQQSVPEGM 120

Query: 819 KTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
            T  +QL+GLA + +S  P V  +FP  +L E+ + R D LF+ +++WTL++I  YIE
Sbjct: 121 VTTEQQLKGLALIDRSCSPPVTWHFPLSDLPENERERFDVLFKTKERWTLDEITSYIE 178

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|326918051|ref|XP_003205305.1| PREDICTED: sister chromatid cohesion protein DCC1-like [Meleagris gallopavo]

 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/170 (40%), Positives = 105/170 (61%), Gaps = 4/170 (2%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           GY R L+ DY  ++L+H+  L+DS SWS   +++   +  LE L P E ++ + +H ++ 
Sbjct: 158 GYWRILEFDYEMKLLNHVTQLIDSESWS---LNKVPLRTCLEELGPLEPIE-MIEHILLI 213

Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
              K   +GE Y+ + EDKICR I + LL+   KF L +F  VWQ SVPEG+ T+L QL+
Sbjct: 214 YGRKYTDDGEVYFEMCEDKICRAIAQMLLQNAVKFNLAEFHEVWQQSVPEGMSTSLDQLK 273

Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           GLA V ++S+P  +      +L ED + R + LF +++KWT  DI PYI+
Sbjct: 274 GLALVDKASRPETIFLLKVEDLPEDNQERFNSLFSIREKWTEADITPYIQ 323

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332376430|gb|AEE63355.1| unknown [Dendroctonus ponderosae]

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 104/170 (61%), Gaps = 3/170 (1%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           G++R L+ DY+FR+LS++L ++D NSW+   +D   T  +L+ +VP  I++ LF  Y   
Sbjct: 193 GFVRELEFDYHFRVLSYMLKIIDENSWTISTVDYDVTCDSLKEIVPEAIIEALFKKY--- 249

Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
           +++    +G   +     ++C++   A+LR   KF L +FL  WQ SVPEG+ TN + L 
Sbjct: 250 TSEFRIIDGARLFKYKPQEVCQIFARAILRSAAKFNLEEFLQAWQESVPEGIVTNEEMLY 309

Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           G+A + + S P V+  F E  L +DI  R+  LF+ +DKWT+ +I PYI+
Sbjct: 310 GIAIINRKSSPKVIWEFEEALLPDDINERLHMLFEAKDKWTVAEIAPYIK 359

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149066381|gb|EDM16254.1| similar to hypothetical protein MGC5528 (predicted) [Rattus norvegicus]

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 4/170 (2%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           GY R L+ DY  ++L+H+  LVDS SWS +++        L  L P E+++     Y  +
Sbjct: 208 GYWRILEFDYEIKLLNHVTQLVDSESWSFNKVPLNVCLQELGPLEPEEMIEHCLKCYGKK 267

Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
             DK    GE Y+ L  DK+CR   E LL+   KF L +F  VWQ SVPEG+ T L QL+
Sbjct: 268 YVDK----GEVYFELNADKVCRATAEMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLK 323

Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           GLA V +SS+P ++  F    L E  + R + LF +++KWT EDI PYI+
Sbjct: 324 GLALVDRSSRPEIIFLFKVDALPEGTQDRFNSLFSLREKWTEEDIAPYIQ 373

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|62652428|ref|XP_216934.3| PREDICTED: sister chromatid cohesion protein DCC1 [Rattus norvegicus] gi|392341505|ref|XP_002726975.2| PREDICTED: LOW QUALITY PROTEIN: sister chromatid cohesion protein DCC1 [Rattus norvegicus]

 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 4/170 (2%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           GY R L+ DY  ++L+H+  LVDS SWS +++        L  L P E+++     Y  +
Sbjct: 208 GYWRILEFDYEIKLLNHVTQLVDSESWSFNKVPLNVCLQELGPLEPEEMIEHCLKCYGKK 267

Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
             DK    GE Y+ L  DK+CR   E LL+   KF L +F  VWQ SVPEG+ T L QL+
Sbjct: 268 YVDK----GEVYFELNADKVCRATAEMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLK 323

Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           GLA V +SS+P ++  F    L E  + R + LF +++KWT EDI PYI+
Sbjct: 324 GLALVDRSSRPEIIFLFKVDALPEGTQDRFNSLFSLREKWTEEDIAPYIQ 373

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301780318|ref|XP_002925576.1| PREDICTED: sister chromatid cohesion protein DCC1-like [Ailuropoda melanoleuca] gi|281350859|gb|EFB26443.1| hypothetical protein PANDA_015097 [Ailuropoda melanoleuca]

 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 100/170 (58%), Gaps = 4/170 (2%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           GY R L+ DY  ++L+H++ LVDS SWS D++        L  L P E+++     Y   
Sbjct: 188 GYWRILEFDYEMKLLNHVIQLVDSESWSFDKVPLNTCLQELGPLEPEEMIEHCLKCY--- 244

Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
              K  + GE Y+ L  DKICRV  + LL+   KF L +F  VWQ SVPEG+ T L QL+
Sbjct: 245 -GTKYIEEGEVYFALSADKICRVTAQMLLQNAVKFNLAEFQEVWQQSVPEGMVTRLDQLK 303

Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           GLA V + S+P ++      +L ED + R + LF +++KWT EDI PYI+
Sbjct: 304 GLALVDRHSRPEIIFLLKVDDLPEDNQERFNSLFSLREKWTEEDIAPYIQ 353

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118087340|ref|XP_418464.2| PREDICTED: sister chromatid cohesion protein DCC1-like [Gallus gallus]

 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 4/170 (2%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           GY R L+ DY  ++L+H+  L+DS SW     ++   +  LE L P E  + + +H +  
Sbjct: 189 GYWRVLEFDYEMKLLNHVTQLIDSESWP---FNKVPLRTCLEELGPLEPTE-MIEHILSS 244

Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
              K + +GE Y+ + EDKICR I + LL+   KF L++F  VWQ SVPEG+ T+L QL+
Sbjct: 245 YGRKYSDDGEVYFEMREDKICRAIAQMLLKNAVKFNLSEFHEVWQQSVPEGMSTSLDQLK 304

Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           GLA V ++S+P  +      +L ED + R + LF +++KWT  DI PYI+
Sbjct: 305 GLALVDKASRPETIFLLKVEDLPEDNQERFNSLFSIREKWTEVDITPYIQ 354

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270011205|gb|EFA07653.1| hypothetical protein TcasGA2_TC030592 [Tribolium castaneum]

 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 103/170 (60%), Gaps = 3/170 (1%)

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
           G IR LD +Y+FR LS++L L++ NSW+ D+ID  ET  +L  ++P  I+  LFD Y  E
Sbjct: 193 GKIRLLDVEYHFRALSYMLKLIEENSWNLDEIDFDETLNSLRDIIPETILKNLFDKYTTE 252

Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
           S      +G   Y   E +ICR   + LL    KF L +FL  W+ SVPEG+  + + L 
Sbjct: 253 SK---IVDGLQLYSYKEREICRFFAQILLYGAGKFNLEEFLQAWRESVPEGMTCDEELLH 309

Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
           G+A + + S P V+  FPE  L E+I  R ++LF+ ++KWT+ +I PYI+
Sbjct: 310 GIAIIDRKSDPPVISAFPEEELPEEINARFNKLFKAKEKWTVPEITPYIQ 359

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	876
ZFIN|ZDB-GENE-040912-35	391	dscc1 "defective in sister chr	0.190	0.427	0.4	2.6e-42
RGD|1561749	399	Dscc1 "defective in sister chr	0.189	0.416	0.417	5.3e-40
MGI|MGI:1919357	399	Dscc1 "defective in sister chr	0.189	0.416	0.417	6.8e-40
UNIPROTKB|Q6GL75	391	dscc1 "Sister chromatid cohesi	0.246	0.552	0.345	1.8e-39
UNIPROTKB|Q6GMB0	390	dscc1 "Sister chromatid cohesi	0.240	0.541	0.347	2.3e-38
UNIPROTKB|F1NKY0	391	DSCC1 "Uncharacterized protein	0.190	0.427	0.394	4.1e-38
UNIPROTKB|Q9BVC3	393	DSCC1 "Sister chromatid cohesi	0.189	0.422	0.405	5.7e-38
UNIPROTKB|F1S283	362	DSCC1 "Uncharacterized protein	0.189	0.458	0.4	3.1e-37
UNIPROTKB|F1MTU0	394	DSCC1 "Uncharacterized protein	0.189	0.421	0.4	1.5e-35
GENEDB_PFALCIPARUM|PFB0915w	1558	PFB0915w "liver stage antigen	0.426	0.240	0.189	2.3e-17

ZFIN|ZDB-GENE-040912-35 dscc1 "defective in sister chromatid cohesion 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 331 (121.6 bits), Expect = 2.6e-42, Sum P(2) = 2.6e-42
 Identities = 68/170 (40%), Positives = 98/170 (57%)

Query:   707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
             G+ R LD DY  ++L H+  LVDS SWS  ++  +     L +L P  +++   + Y   
Sbjct:   189 GFWRILDFDYEMKLLGHVTQLVDSESWSFSKVPLSVCLEELGSLEPKAMIEHCLNCYGRR 248

Query:   767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
              +D+ NQ     Y L EDK+CR   + LL+   KF L++F  VWQ SVPEG+ T L QL 
Sbjct:   249 HSDEDNQ---VMYALDEDKVCRATAQLLLQNAVKFNLSEFQEVWQQSVPEGMGTRLDQLR 305

Query:   827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
             GLA + +SSKP  +      +L ED   R + LF +++KWT +DI PYI+
Sbjct:   306 GLALIDRSSKPETISLLRVEDLPEDTLERFNSLFSLREKWTQDDIEPYIQ 355

GO:0000785 "chromatin" evidence=ISS

GO:0006275 "regulation of DNA replication" evidence=ISS

GO:0034088 "maintenance of mitotic sister chromatid cohesion" evidence=ISS

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1561749 Dscc1 "defective in sister chromatid cohesion 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 331 (121.6 bits), Expect = 5.3e-40, Sum P(2) = 5.3e-40
 Identities = 71/170 (41%), Positives = 99/170 (58%)

Query:   707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
             GY R L+ DY  ++L+H+  LVDS SWS +++        L  L P E+++     Y  +
Sbjct:   199 GYWRILEFDYEIKLLNHVTQLVDSESWSFNKVPLNVCLQELGPLEPEEMIEHCLKCYGKK 258

Query:   767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
               DK    GE Y+ L  DK+CR   E LL+   KF L +F  VWQ SVPEG+ T L QL+
Sbjct:   259 YVDK----GEVYFELNADKVCRATAEMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLK 314

Query:   827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
             GLA V +SS+P ++  F    L E  + R + LF +++KWT EDI PYI+
Sbjct:   315 GLALVDRSSRPEIIFLFKVDALPEGTQDRFNSLFSLREKWTEEDIAPYIQ 364

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0000785 "chromatin" evidence=IEA;ISO

GO:0005654 "nucleoplasm" evidence=IEA;ISO

GO:0006275 "regulation of DNA replication" evidence=IEA;ISO

GO:0034088 "maintenance of mitotic sister chromatid cohesion" evidence=IEA;ISO

GO:0034421 "post-translational protein acetylation" evidence=IEA;ISO

MGI|MGI:1919357 Dscc1 "defective in sister chromatid cohesion 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 330 (121.2 bits), Expect = 6.8e-40, Sum P(2) = 6.8e-40
 Identities = 71/170 (41%), Positives = 99/170 (58%)

Query:   707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
             GY R L+ DY  ++L+H+  LVDS SWS D++  T     L  L P E+++     Y   
Sbjct:   199 GYWRILEFDYEIKLLNHVTQLVDSESWSLDRVPLTVCLQELGPLEPEEMIEHCLKCYGKR 258

Query:   767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
               DK     + Y+ L  DKICRV  E LL+   KF L +F  VWQ SVPEG+ T L QL+
Sbjct:   259 YVDKD----DVYFELDADKICRVTAEMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLK 314

Query:   827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
             GLA V ++S+P ++      +L E  + R + LF +++KWT EDI PYI+
Sbjct:   315 GLALVDRNSRPEIIFLLKVDDLPEGTQDRFNSLFSLREKWTEEDITPYIQ 364

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0000785 "chromatin" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA

GO:0006275 "regulation of DNA replication" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0034088 "maintenance of mitotic sister chromatid cohesion" evidence=ISO

GO:0034421 "post-translational protein acetylation" evidence=ISO

UNIPROTKB|Q6GL75 dscc1 "Sister chromatid cohesion protein DCC1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 326 (119.8 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
 Identities = 78/226 (34%), Positives = 116/226 (51%)

Query:   651 EETVNPPTDQQCIEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIR 710
             E T N P +++  E  D +L TTE+ +N       I+    +  +           G+ R
Sbjct:   141 ENTYNGPENER--ESQDNSLHTTEDLLN------MIQASNEELVDHLKAIHACSINGFWR 192

Query:   711 TLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVESTDK 770
              LD DY  ++L+HI  L+DS SWS  ++        L +L P E+++     Y     D+
Sbjct:   193 LLDFDYEMKLLNHITQLIDSESWSFSKVPLPVCLQELRSLEPEEMIEHCLTCYGKRLIDE 252

Query:   771 TNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAF 830
                 G  ++ L EDKICR     LL+   KF L +F  VWQ SVPEG+ T L QL+GLA 
Sbjct:   253 GT--GGDFFALDEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPEGMNTRLDQLKGLAL 310

Query:   831 VRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
             V ++S+P  +      +L ED + R + LF +++KW   DI PYI+
Sbjct:   311 VDRTSRPETIFLLKTEDLPEDTQERFNTLFGMREKWAEADIAPYIK 356

GO:0000785 "chromatin" evidence=ISS

GO:0006275 "regulation of DNA replication" evidence=ISS

GO:0034088 "maintenance of mitotic sister chromatid cohesion" evidence=ISS

UNIPROTKB|Q6GMB0 dscc1 "Sister chromatid cohesion protein DCC1" [Xenopus laevis (taxid:8355)]

 Score = 312 (114.9 bits), Expect = 2.3e-38, Sum P(2) = 2.3e-38
 Identities = 80/230 (34%), Positives = 117/230 (50%)

Query:   651 EETVNPPTDQQCIEISDET-LGTTEE---TVNPPTDQQCIEIKRFDRANSSLGFRFLLFP 706
             E T N P ++   E S ET L TTE+    +   T++    +K     N           
Sbjct:   141 ENTYNGPENES--ESSQETSLYTTEDLLSVIQSSTEELMDHLKAIHACN---------IK 189

Query:   707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
             G  R LD DY  ++L+HI  L+DS SWS  ++        L +L P E+++    H +  
Sbjct:   190 GIWRLLDFDYEMKLLNHITQLIDSESWSFSKVPLQVCLQELRSLEPEEMIE----HCLTC 245

Query:   767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
                +  + G   + L EDKICR     LL+   KF L +F  VWQ SVP+G+ T L QL+
Sbjct:   246 YGKRLMEEGGDCFALDEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPDGMNTRLDQLK 305

Query:   827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
             GLA V ++S+P  +      +L ED + R + LF +++KWT  DI PYI+
Sbjct:   306 GLALVDRTSRPETIFLLQTEDLPEDTQERFNTLFGMREKWTEADIAPYIQ 355

GO:0000785 "chromatin" evidence=ISS

GO:0006275 "regulation of DNA replication" evidence=ISS

GO:0034088 "maintenance of mitotic sister chromatid cohesion" evidence=ISS

UNIPROTKB|F1NKY0 DSCC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 333 (122.3 bits), Expect = 4.1e-38, Sum P(2) = 4.1e-38
 Identities = 67/170 (39%), Positives = 102/170 (60%)

Query:   707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
             GY R L+ DY  ++L+H+  L+DS SW  +++        L  L P E+++ +   Y  +
Sbjct:   190 GYWRVLEFDYEMKLLNHVTQLIDSESWPFNKVPLRTCLEELGPLEPTEMIEHILSSYGRK 249

Query:   767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
              +D     GE Y+ + EDKICR I + LL+   KF L++F  VWQ SVPEG+ T+L QL+
Sbjct:   250 YSDDA---GEVYFEMREDKICRAIAQMLLKNAVKFNLSEFHEVWQQSVPEGMSTSLDQLK 306

Query:   827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
             GLA V ++S+P  +      +L ED + R + LF +++KWT  DI PYI+
Sbjct:   307 GLALVDKASRPETIFLLKVEDLPEDNQERFNSLFSIREKWTEVDITPYIQ 356

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0006275 "regulation of DNA replication" evidence=IEA

GO:0034088 "maintenance of mitotic sister chromatid cohesion" evidence=IEA

GO:0034421 "post-translational protein acetylation" evidence=IEA

UNIPROTKB|Q9BVC3 DSCC1 "Sister chromatid cohesion protein DCC1" [Homo sapiens (taxid:9606)]

 Score = 319 (117.4 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 69/170 (40%), Positives = 98/170 (57%)

Query:   707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
             GY R L+ DY  ++L+H+  LVDS SWS  ++        L  L P E+++     Y  +
Sbjct:   193 GYWRILEFDYEMKLLNHVTQLVDSESWSFGKVPLNTCLQELGPLEPEEMIEHCLKCYGKK 252

Query:   767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
               D+    GE Y+ L  DKICR     LL+   KF L +F  VWQ SVPEG+ T+L QL+
Sbjct:   253 YVDE----GEVYFELDADKICRAAARMLLQNAVKFNLAEFQEVWQQSVPEGMVTSLDQLK 308

Query:   827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
             GLA V + S+P ++      +L ED + R + LF +++KWT EDI PYI+
Sbjct:   309 GLALVDRHSRPEIIFLLKVDDLPEDNQERFNSLFSLREKWTEEDIAPYIQ 358

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0034088 "maintenance of mitotic sister chromatid cohesion" evidence=IMP

GO:0006275 "regulation of DNA replication" evidence=IMP

GO:0034421 "post-translational protein acetylation" evidence=IMP

GO:0000785 "chromatin" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA

UNIPROTKB|F1S283 DSCC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 318 (117.0 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
 Identities = 68/170 (40%), Positives = 99/170 (58%)

Query:   707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
             GY R L+ DY  ++L+H+  LVDS SWS  ++        L  L P E+++   + Y  +
Sbjct:   197 GYWRILEFDYEMKLLNHVTQLVDSESWSFSKVPLNTCLQELGPLEPEEMIEHCLNCYGKK 256

Query:   767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
               D+    GE Y+ L  DKICR   + LL+   KF L +F  VWQ SVPEG+ T L QL+
Sbjct:   257 YLDE----GEVYFELSADKICRATAQMLLQNAVKFNLAEFQEVWQQSVPEGMITRLDQLK 312

Query:   827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
             GLA V + S+P ++      +L E+ + R + LF +++KWT EDI PYI+
Sbjct:   313 GLALVDRHSRPEIIFLLKVDDLPEENQERFNSLFSLREKWTEEDIAPYIQ 362

GO:0034421 "post-translational protein acetylation" evidence=IEA

GO:0034088 "maintenance of mitotic sister chromatid cohesion" evidence=IEA

GO:0006275 "regulation of DNA replication" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

UNIPROTKB|F1MTU0 DSCC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 68/170 (40%), Positives = 97/170 (57%)

Query:   707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
             GY R L+ DY  ++L+HI  LVDS SWS  ++        L  L P E+++     Y  +
Sbjct:   194 GYWRILEFDYEMKLLNHITQLVDSESWSFSKVPLNTCLQELGPLEPEEMIEHCLKCYGKK 253

Query:   767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
              T++    G  Y+ L  DKICR   + LL+   KF L +F  VWQ SVPEG+ T L QL+
Sbjct:   254 YTEE----GAVYFELSADKICRATAQMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLK 309

Query:   827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
             GLA V + S+P ++      +L E  + R + LF +++KWT EDI PYI+
Sbjct:   310 GLALVDRQSRPEIIFLLKAEDLPEGDQERFNSLFSLREKWTEEDIAPYIQ 359

GO:0034421 "post-translational protein acetylation" evidence=IEA

GO:0034088 "maintenance of mitotic sister chromatid cohesion" evidence=IEA

GO:0006275 "regulation of DNA replication" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GENEDB_PFALCIPARUM|PFB0915w PFB0915w "liver stage antigen 3" [Plasmodium falciparum (taxid:5833)]

 Score = 243 (90.6 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
 Identities = 73/385 (18%), Positives = 182/385 (47%)

Query:    32 EESLCPPSNQQCIEMSDETLGTT-EETVNPPIDQQCNPMAEETLGRMEESLCPPSNQQCI 90
             EES+     +   E  DE++ ++ EE++   +D+  +   EE +    E +  P+ ++ +
Sbjct:   236 EESVEENVEENVEENDDESVASSVEESIASSVDESIDSSIEENVAPTVEEIVAPTVEEIV 295

Query:    91 EMS--DETLGTTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIEMT 148
               S  +    + EE+V    ++   E  EE +++ + +  ++  EE++++   +   E  
Sbjct:   296 APSVVESVAPSVEESVEENVEESVAENVEESVAENVEESVAENVEESVAENVEESVAENV 355

Query:   149 EETLGRTEESLCPPSNQQCIEMSVETL--GTTEETVNPPSDQQCIEMSEETLSQPSNQQC 206
             EE++    E +  P+ ++ +  +VE +   + EE+V P  ++  +   EE++++   +  
Sbjct:   356 EESVAENVEEIVAPTVEESVAPTVEEIVAPSVEESVAPSVEEIVVPTVEESVAENVEEIV 415

Query:   207 IEMTEETLG-RMEESPCPPSNQQCIEMSDETLG-TTEETVNPPSDQQCIEMSEETLSQPS 264
                 EE +   +EE   P   +      +E +  + EE+V P  ++  +   EE++++  
Sbjct:   416 APSVEEIVAPSVEEIVAPTVEESVAPTVEEIVAPSVEESVAPSVEEIVVPTVEESVAENV 475

Query:   265 NQQCNQMAEETLGRMEESLCPPSNQQCIEMT-EETLGRT-EETVNPPTDQQCIEMAEEIL 322
              +   +  EE +    E +  PS ++ +  + EE +  + EE V P  ++      EEI+
Sbjct:   476 EESVAENVEEIVAPSVEEIVAPSVEEIVAPSVEEIVAPSVEEIVAPSVEEIVAPSVEEIV 535

Query:   323 TPPINQQWSQMSEETLSQPSNQQFIKMTEDTLYERTVQDSKVVIAHAKLTEDELCPITQA 382
              P + +  +   EE ++ P+ ++ +  T + +   +V++         + E+    ++  
Sbjct:   536 APSVEEIVAPSVEEIVA-PTVEEIVAPTVEEIVAPSVEEIVAPTVEESVAENVATNLSDN 594

Query:   383 IYMGSSMQSLKLMEIPQSLISEIQQ 407
             + + + +  ++  EI  S+++EI++
Sbjct:   595 L-LSNLLGGIETEEIKDSILNEIEE 618

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	876
pfam09724	325	pfam09724, DUF2036, Uncharacterized conserved prot	5e-32
pfam09724	325	pfam09724, DUF2036, Uncharacterized conserved prot	2e-09

>gnl|CDD|220363 pfam09724, DUF2036, Uncharacterized conserved protein (DUF2036)

 Score =  127 bits (320), Expect = 5e-32
 Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 11/177 (6%)

Query: 705 FPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTET-KVTLEALVPAEIVDFLFDHY 763
             G  R L  DY  + L  +L L+DSNSW  D++   E  +    +  P E+++ + + +
Sbjct: 155 IDGRARVLSPDYETKALDLLLVLLDSNSWDLDEVSLDEVVEALRPSEYPEEVIETVLNKF 214

Query: 764 MVESTDKTNQNGEPYYCLIEDKICRVIGEALLRPT--EKFILNDFLTVWQASVPE--GLK 819
             + +++ ++     + L EDK+CR   E LL+     K  L++F+  W+ S+PE  G+ 
Sbjct: 215 GTKESEEGDR-----FALDEDKVCRWFAEQLLQKGLAGKMNLDEFMETWKESLPEFFGMD 269

Query: 820 TNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
            +L QL G A + + ++  + QY  E +L  D K R  +LF+++ +W LE+I PYIE
Sbjct: 270 LDLDQLRGYALLDRPAEETI-QYLSEEDLPTDPKERFKELFELRKRWELEEIEPYIE 325

This family of proteins includes members ranging in size from approximately 300 to 460 residues. There are a number of well-conserved domains along the length. Length = 325

>gnl|CDD|220363 pfam09724, DUF2036, Uncharacterized conserved protein (DUF2036)

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 391 SLKLMEIPQSLISEIQQGN-RVLFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYF 449
             KL+E+ + L+  I++G   + F+G   D  VLCT  +T+ +K+AETSN+L L+     
Sbjct: 1   DYKLLELDEDLLDAIKEGQGSLTFKGLKDDKAVLCTDDKTYDLKQAETSNTLLLLPECKP 60

Query: 450 PD 451
           PD
Sbjct: 61  PD 62

This family of proteins includes members ranging in size from approximately 300 to 460 residues. There are a number of well-conserved domains along the length. Length = 325

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	876
PF09724	325	DUF2036: Uncharacterized conserved protein (DUF203	100.0
KOG0798|consensus	380		100.0

>PF09724 DUF2036: Uncharacterized conserved protein (DUF2036); InterPro: IPR019128 Sister chromatid cohesion protein DCC1 is a component of the RFC-like complex CTF18-RFC

Probab=100.00  E-value=4.3e-73  Score=589.49  Aligned_cols=320  Identities=30%  Similarity=0.552  Sum_probs=282.5

Q ss_pred             ceEEEecChhhHHHHhcCCeEEEccCCCCCeEEeeCCCeEEEEEEecccceEEecCCCCCCCCCccCCChhhHHHHHHhc
Q psy7139         391 SLKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFPDHPRIKENNTETERELVRQN  470 (876)
Q Consensus       391 ~~kLLEl~~~LL~~Ie~G~~l~fRG~~~D~AVLCT~~kTY~VK~aeTSNSLLLi~~~~~p~~~~~~e~nt~~er~l~~~~  470 (876)
                      +|||||||++|++.|++|++|+|||+++|+|||||++|||+||+|+|||||||+++...++.....+.+.          
T Consensus         1 ~ykLLEl~~~Ll~~l~~~~~L~iKg~~~~~aVLCT~~kTy~vrq~~~SNsllL~~~~~~~~~~~~~~~~~----------   70 (325)
T PF09724_consen    1 EYKLLELPPELLEALESGESLTIKGDPDDDAVLCTDDKTYSVRQVNTSNSLLLMPPCQPPDDSDPNDDSS----------   70 (325)
T ss_pred             CcEEEECCHHHHHHHhCCCeEEEecCCCCceEEcCCCCcEEEEEeecCceeEEcCCCCCccccccccccc----------
Confidence            5999999999999999999999999999999999999999999999999999999876543211000000          


Q ss_pred             ccccccCCchhhhhhhhhhcCCCcccccccccccccCCCCChhhhhhhhhcccccchhccCccccchhhhhhhhhccccc
Q psy7139         471 KKKETLCPNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQRIKMTEETLSTTEEILSPQSNKQSIEMTKETLDLTS  550 (876)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~pp~~~~~~ik~~~~~l~~~~~~~~~~s~~~~i~~~~~~~dl~~  550 (876)
                                                        ..                                 +  +..-.+++
T Consensus        71 ----------------------------------~~---------------------------------~--~~~~~~~~   81 (325)
T PF09724_consen   71 ----------------------------------TN---------------------------------E--RTDPTLVV   81 (325)
T ss_pred             ----------------------------------cc---------------------------------c--cccCceEE
Confidence                                              00                                 0  00112344


Q ss_pred             ccccccceeeeecCCChHHHHhhhHhhcccccCCCCCCCchhhhhcccCCCcccccccCCCCchhhhhhHHHHhcccccc
Q psy7139         551 NRQCNQMSEETVCLPSNQQCIEMTEETLGRMEESLCPPSNQQCIEISDETLGTTEETVNPPTDQQCNQMTEETLGRTEES  630 (876)
Q Consensus       551 ~~~~~~~lEl~~~~PrL~kL~~L~~~~~~L~e~~Y~gpe~e~~~~~~d~~~yT~e~~~~~~~~~~~~~~~eeLl~~~~~~  630 (876)
                      .+.+++|||++++.|++++|+.|      |+...|.|++.+.... .+...||                +++|+++    
T Consensus        82 ~~~~~~~~El~~~~p~l~~L~~l------l~~~~y~g~~~e~~~~-~~~~~~t----------------~~~L~~~----  134 (325)
T PF09724_consen   82 IASCSSYLELRPIAPRLNKLREL------LRLPPYDGEEDEESND-GNKSDYT----------------LDELLDN----  134 (325)
T ss_pred             EEEeccEEEEEecCCcHHHHHHH------hcCCcccCCccccccc-ccccccc----------------HHHHHHh----
Confidence            58899999999999999999999      9999999988776422 2244599                9999999    


Q ss_pred             CCCCCccccccccccccCccccccCCCCCCcccccCHHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEcCEEE
Q psy7139         631 LCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIR  710 (876)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~IQASdeEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywR  710 (876)
                                                      ||||++||.++|.+++           |            |+|||+||
T Consensus       135 --------------------------------vq~S~~El~~~l~~l~-----------~------------~ei~G~~r  159 (325)
T PF09724_consen  135 --------------------------------VQASEAELRQALKELG-----------A------------CEIDGYWR  159 (325)
T ss_pred             --------------------------------CCccHHHHHHHHHHCC-----------E------------EEECCEEE
Confidence                                            9999999999999999           9            99999999


Q ss_pred             EeChHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHhhc-CCCHHHHHHHHHHccCccccccCCCCCCeEEechhHHHHH
Q psy7139         711 TLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEA-LVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRV  789 (876)
Q Consensus       711 LLSpsYLtrILdlILtlIdeESWsLdkVpldetvEALee-~yPreVIEhVLrkYGtpS~~k~~ddGd~~wkLDEdKICRw  789 (876)
                      +||++|+.++|++||+.++++||+++.++++++.++|.+ .||++|++|||++||+    ..+++ ..+|+||++|||||
T Consensus       160 ~Ls~~~~~~~L~~il~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~v~~~vl~~~~~----~~~~~-~~~~~Ld~~ki~~~  234 (325)
T PF09724_consen  160 LLSPSYLFEILDLILTSAVEESWDLDQFPVEEVVEALEEDEYPREVVEHVLRKFGT----REDDD-DSWWKLDEDKICRW  234 (325)
T ss_pred             ECCHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHhcccCCCHHHHHHHHHHhCC----CccCC-CceEEcCHHHHHHH
Confidence            999999999999999999999999999999999999986 6999999999999998    32221 45799999999999


Q ss_pred             HHHHhcCCCC--CCCHHHHHHHHHHhCCC--CccccccccceeEEEeCCCCCcEEEEecCCCCcccHHHHHHHHHhcCCC
Q psy7139         790 IGEALLRPTE--KFILNDFLTVWQASVPE--GLKTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDK  865 (876)
Q Consensus       790 fAiqLLraa~--KfnLEEFMEtWKsSVPE--Gm~pDLEmLKGlALVd~sSsp~tIrYFpesDLP~DPkERFkeLFkIRpK  865 (876)
                      ||+++|+++.  +|+++|||++||++||+  ++.++++||+|+|+++..+.+++|+||++++||.||++||++||++|+|
T Consensus       235 ~a~~lL~~~~~~~~~~~eFl~~Wk~~lP~~~~~~~~l~~L~G~~~~~~~~~~~~I~y~~~~~Lp~dp~~Rf~~LF~~~~k  314 (325)
T PF09724_consen  235 FAIQLLKAHASSSFPLDEFLEAWKSSLPEFFGMDPDLEMLRGLALIDDRPSPTTIQYFPESDLPTDPKERFKELFKLRPK  314 (325)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHhCCCcCCCCCCHHHhCCeeEeecCCCCCEEEEecHHHCCCCHHHHHHHHHhcCCC
Confidence            9999999987  99999999999999999  7778999999999998889999999999999999999999999999999


Q ss_pred             CChhhcccccC
Q psy7139         866 WTLEDIRPYIE  876 (876)
Q Consensus       866 WTlEEIePYIe  876 (876)
                      |+++||+|||+
T Consensus       315 W~~~ei~Pyi~  325 (325)
T PF09724_consen  315 WTLDEIEPYIE  325 (325)
T ss_pred             CCHHHHHHhhC
Confidence            99999999997

This complex is required for the efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighbouring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA [, ].

>KOG0798|consensus

Probab=100.00  E-value=1.1e-72  Score=597.03  Aligned_cols=345  Identities=28%  Similarity=0.474  Sum_probs=312.6

Q ss_pred             HHHHHHHHHcCCCccccCCcceEEEecCC----CCceEEEecChhhHHHHhcCCeEEEccCCCCCeEEeeCCCeEEEEEE
Q psy7139         360 QDSKVVIAHAKLTEDELCPITQAIYMGSS----MQSLKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTFQVKEA  435 (876)
Q Consensus       360 ~d~~~~~~~AKl~~~~l~~~~q~l~f~~~----~~~~kLLEl~~~LL~~Ie~G~~l~fRG~~~D~AVLCT~~kTY~VK~a  435 (876)
                      ++|++..+||||+..+|.+++++++|+++    .++|.||+++.+++..+.+|.+|+|||+.+|+|||||++|||+||.|
T Consensus         2 ~ev~a~~~~~~L~~~~~~~~~~~l~f~P~~~~~s~~~~LLeld~~~i~~~~eg~~L~fkgd~de~aVLCT~dkTy~vK~~   81 (380)
T KOG0798|consen    2 EEVDAQFTFAKLEANELLPRSILLKFPPEYSDISSEFLLLELDDDLIQQLEEGHSLVFKGDFDEDAVLCTDDKTYAVKQV   81 (380)
T ss_pred             cchhhhhhhhhhhhcccchhhhcccCCCccccchhhhhhhcccHHHhhchhcCceEEEecCCccceEEecCCceeeeeee
Confidence            68999999999999999999999999976    58999999999999999999999999999999999999999999999


Q ss_pred             ecccceEEecCCCCCCCCCccCCChhhHHHHHHhcccccccCCchhhhhhhhhhcCCCcccccccccccccCCCCChhhh
Q psy7139         436 ETSNSLTLIRGLYFPDHPRIKENNTETERELVRQNKKKETLCPNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQR  515 (876)
Q Consensus       436 eTSNSLLLi~~~~~p~~~~~~e~nt~~er~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~pp~~~~~~  515 (876)
                      ++|||+||+|++.++++...+. +                                +                       
T Consensus        82 ~~SNs~LLip~~~~~~~~~~~p-~--------------------------------~-----------------------  105 (380)
T KOG0798|consen   82 EQSNSVLLIPELKPADDVLTDP-D--------------------------------L-----------------------  105 (380)
T ss_pred             cccceEEEecCCcCccccccCc-C--------------------------------C-----------------------
Confidence            9999999999998775432110 0                                0                       


Q ss_pred             hhhhhcccccchhccCccccchhhhhhhhhcccccccccccceeeeecCCChHHHHhhhHhhcccccCCCCCCCchhhhh
Q psy7139         516 IKMTEETLSTTEEILSPQSNKQSIEMTKETLDLTSNRQCNQMSEETVCLPSNQQCIEMTEETLGRMEESLCPPSNQQCIE  595 (876)
Q Consensus       516 ik~~~~~l~~~~~~~~~~s~~~~i~~~~~~~dl~~~~~~~~~lEl~~~~PrL~kL~~L~~~~~~L~e~~Y~gpe~e~~~~  595 (876)
                                                .+...+..+++..  |+|++++.|++.+|+++      |++.+|.|++++.+.+
T Consensus       106 --------------------------~~~~~~~~~f~~~--~~E~re~~p~l~klk~i------l~~~~~~~~e~~~e~~  151 (380)
T KOG0798|consen  106 --------------------------SKNYIDTKIFAFL--EFELREIYPRLFKLKKI------LYENELDWDEKEVELE  151 (380)
T ss_pred             --------------------------CCccccceeeccc--eeeeeehhhhhhhhhhh------hhcCCCCCcHHHhhhc
Confidence                                      0111223333333  99999999999999999      9999999999998643


Q ss_pred             cccCCCcccccccCCCCchhhhhhHHHHhccccccCCCCCccccccccccccCccccccCCCCCCcccccCHHHHHHHHH
Q psy7139         596 ISDETLGTTEETVNPPTDQQCNQMTEETLGRTEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEISDETLGTTEE  675 (876)
Q Consensus       596 ~~d~~~yT~e~~~~~~~~~~~~~~~eeLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~IQASdeEL~~~L~  675 (876)
                      .  ...||                ++||++.                                    ||||++|++.+|+
T Consensus       152 ~--~~~yT----------------~~dLL~s------------------------------------VqaS~eE~~~~Lq  177 (380)
T KOG0798|consen  152 S--NSVYT----------------LEDLLNS------------------------------------VQASREEVMSGLQ  177 (380)
T ss_pred             c--ccccc----------------HHHHHHh------------------------------------ccccHHHHHHHHH
Confidence            3  22299                9999999                                    9999999999999


Q ss_pred             HhCCCCccchhhhhhccccccCCCeeeEEEcCEEEEeChHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHhhc-CCCHH
Q psy7139         676 TVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEA-LVPAE  754 (876)
Q Consensus       676 ~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywRLLSpsYLtrILdlILtlIdeESWsLdkVpldetvEALee-~yPre  754 (876)
                      +++           |            +++||+||+||++|+.++|++|+.++++++|+++.++...++.++.+ .||++
T Consensus       178 ~l~-----------a------------~~~dG~~riLs~~Y~~~iL~~il~l~~~~~wsf~~v~~~~~v~~l~~dEFpe~  234 (380)
T KOG0798|consen  178 KLF-----------A------------IVKDGFLRILSPDYLCKILNMILVLADEESWSFDEVDLKELVNALKDDEFPED  234 (380)
T ss_pred             hcC-----------c------------EeecCEEEEecHHHHHHHHHHHHHHhhhhcccccchhHHHHhhccccccCcHH
Confidence            999           8            99999999999999999999999999999999999999999999976 46999


Q ss_pred             HHHHHHHHccCccccccCCCCCCeEEechhHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccccccccceeEEEeCC
Q psy7139         755 IVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAFVRQS  834 (876)
Q Consensus       755 VIEhVLrkYGtpS~~k~~ddGd~~wkLDEdKICRwfAiqLLraa~KfnLEEFMEtWKsSVPEGm~pDLEmLKGlALVd~s  834 (876)
                      ++.|||++||.    +.++.++ +|+|++.+||||+|++||+...+|++++||+.||+++|+||.+++++|+|++++++.
T Consensus       235 ~v~~vl~~f~~----k~n~~~~-kf~l~~~li~r~~ar~iL~~~~~~~l~eF~e~W~~~lP~gm~~~~~~L~gl~l~~k~  309 (380)
T KOG0798|consen  235 SVEHVLRSFGI----KDNEEPK-KFRLDEELICRWYARQILRGIVSFSLDEFMELWKKRLPYGMPCDIKQLEGLGLLDKG  309 (380)
T ss_pred             HHHHHHHHhcc----cccCCCC-ccccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCCCcChhhcccccccccC
Confidence            99999999998    4434333 799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCCCCcccHHHHHHHHHhcCCCCChhhcccccC
Q psy7139         835 SKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE  876 (876)
Q Consensus       835 Ssp~tIrYFpesDLP~DPkERFkeLFkIRpKWTlEEIePYIe  876 (876)
                      +.++.|+||.+++||++|++||+.||++|+||+++||.|||+
T Consensus       310 ~~~~~i~~la~~~LP~~pkeRf~~LF~~r~~W~~edl~Pyi~  351 (380)
T KOG0798|consen  310 PFSKLILYLAVEDLPTTPKERFSVLFELRSRWTMEDLEPYIE  351 (380)
T ss_pred             CcchhhhhhhHhhcCCCHHHHHHHHHHHHhhhhHHHhhHHHH
Confidence            999999999999999999999999999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	876
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.3 bits (179), Expect = 2e-13
 Identities = 99/670 (14%), Positives = 190/670 (28%), Gaps = 232/670 (34%)

Query: 249 DQQCIEMSEETLSQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEMTEETLGRTEETVNP 308
           +  C ++ +   S  S ++ + +               +    + +    L + EE V  
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMS----------KDAVSGTLRLFWTLLSKQEEMVQ- 80

Query: 309 PTDQQCIEMAEEILTPPINQQW--SQMSEETLSQPS----------------NQQFIKMT 350
                  +  EE+L    N ++  S +  E   QPS                NQ F K  
Sbjct: 81  -------KFVEEVLRI--NYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 351 ----------EDTLYERTVQDSKVVIAH-------------AKLTEDELCPITQAIY--- 384
                        L E  ++ +K V+                 L+    C +   I+   
Sbjct: 131 VSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 385 MGSSMQSLKLMEIPQSL---------------------ISEIQQGNRVLFRG-------- 415
           + +      ++E+ Q L                     I  IQ   R L +         
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 416 ---DIGDPPVL------C----TQRQTFQVKEAETSNSLTLIRGLYFPDHPRIKENN-TE 461
              ++ +          C    T R             +T         H  +  ++ T 
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFK----------QVTDFLSAATTTHISLDHHSMTL 298

Query: 462 TERELVRQNKKKETLCPNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQRIKM--- 518
           T  E+       ++L    + ++   + L  P         +E+L+  P   +R+ +   
Sbjct: 299 TPDEV-------KSLL--LKYLDCRPQDL--P---------REVLTTNP---RRLSIIAE 335

Query: 519 -TEETLSTTEEILSPQSNKQS--IEMTKETLDLTSNRQC-NQMS--EETVCLPSNQQCI- 571
              + L+T +       +K +  IE +   L+    R+  +++S    +  +P+    + 
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 572 --EMTEETLGRMEESLCPPSNQQCIEISDETLGTTEETVNPPTDQQCNQMTEETLGRTEE 629
             ++ +  +  +   L        +E                  +Q  + T        E
Sbjct: 396 WFDVIKSDVMVVVNKLH---KYSLVE------------------KQPKESTISIPSIYLE 434

Query: 630 SLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEISDETLGTTEETVNPPTDQ------ 683
                 N+    +    +    +  N P   +  +  D           P  DQ      
Sbjct: 435 LKVKLENEY--ALHRSIV----DHYNIP---KTFDSDDLIP--------PYLDQYFYSHI 477

Query: 684 -----QCIEIKRFDRANSS-LGFRFLLFPGYIRTLDHD-YNFRMLSHILN-LVDSNSWSA 735
                     +R        L FRFL      + + HD   +     ILN L     +  
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLE-----QKIRHDSTAWNASGSILNTLQQLKFYK- 531

Query: 736 DQIDRTETKVTLEALVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRVIGEALL 795
             I   +     E LV   I+DFL             +N      LI  K   ++  AL+
Sbjct: 532 PYI--CDNDPKYERLV-NAILDFLPKI---------EEN------LICSKYTDLLRIALM 573

Query: 796 RPTEKFILND 805
              E  I  +
Sbjct: 574 AEDE-AIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 7e-09
 Identities = 71/550 (12%), Positives = 150/550 (27%), Gaps = 163/550 (29%)

Query: 402 ISEIQQGNRVL-------FRGDIGDPPVLCTQRQTFQVKEAE----TSNSLTLIRGLYFP 450
             E Q   + +       F  +     V    +     +E +    + ++++    L++ 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW- 69

Query: 451 DHPRIKENNTETERELVRQNKKKETLCPNQQCI--EMAEETLSQPS------IQQDNQMD 502
               +     E  ++ V     +E L  N + +   +  E   QPS      I+Q +++ 
Sbjct: 70  ---TLLSKQEEMVQKFV-----EEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLY 120

Query: 503 KEILSPPPSNQQRIKMTEETLSTTEEILSPQSN----------KQSIEMTKETLDLTSNR 552
            +       N  R++   + L      L P  N          K    +  +        
Sbjct: 121 NDNQVFAKYNVSRLQPYLK-LRQALLELRPAKNVLIDGVLGSGKTW--VALDVCL----- 172

Query: 553 QCNQMSEETVCLPSNQ-------QCIEMTEETLGRMEESLC----PPSNQQCIEISDETL 601
                S +  C    +        C   + ET+  M + L     P    +  + S    
Sbjct: 173 -----SYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQIDPNWTSRS-DHSSNIK 224

Query: 602 GTTEETVNPPTDQQCNQMTEETL--------GRTEESLCPPSNQQCIEMSDETLGTTE-- 651
                          ++  E  L         +   +     N  C     + L TT   
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLSC-----KILLTTRFK 275

Query: 652 ---ETVNPPTDQQCIEISDETLG-TTEETVNPPTDQQCIEIKRFD-RANSSLGFRFLLFP 706
              + ++  T    I +   ++  T +E  +     + ++ +  D            L  
Sbjct: 276 QVTDFLSAATTTH-ISLDHHSMTLTPDEVKS--LLLKYLDCRPQDLPREVLTTNPRRL-- 330

Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTET--KVTLEALVPAEIVDFLFDHYM 764
             I     D               ++W     D+  T  + +L  L PAE          
Sbjct: 331 SIIAESIRDGLAT----------WDNWKHVNCDKLTTIIESSLNVLEPAEY--------- 371

Query: 765 VESTDKTNQNGEPYY--CLI--ED-KICRVIGEALLRPTEKFILNDFLTVWQASVPEGLK 819
                         +    +      I          PT   +L+    +W   +   + 
Sbjct: 372 -----------RKMFDRLSVFPPSAHI----------PTI--LLS---LIWFDVIKSDVM 405

Query: 820 TNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTR---------IDQLFQVQDKWTLED 870
             + +L   + V +  K   +   P + L   +K           +D  + +   +  +D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDD 463

Query: 871 IRP-----YI 875
           + P     Y 
Sbjct: 464 LIPPYLDQYF 473

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 7e-06
 Identities = 78/594 (13%), Positives = 154/594 (25%), Gaps = 171/594 (28%)

Query: 89  CIEMSDETLG--TTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIE 146
           C ++ D      + EE              + I+        +     TL     +   +
Sbjct: 35  CKDVQDMPKSILSKEEI-------------DHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 147 MTEETLGRTEESLCPPSNQQCIEMSVETLGTTEETVNPPSDQQCIEMSEETLSQPSNQQC 206
             EE L    + L  P   +  + S+ T    E+     +D Q    ++  +S+    Q 
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--VFAKYNVSRL---QP 136

Query: 207 IEMTEETLGRMEESP-------------------CPPSNQQCIEMSDE----TLGTTEET 243
                + L  +  +                    C     QC +M  +     L      
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIFWLNLKNCN-- 193

Query: 244 VNPPSDQQCIEMSEE---TLSQPSNQQCNQM---------AEETLGRM------EESL-- 283
               S +  +EM ++    +      + +            +  L R+      E  L  
Sbjct: 194 ----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 284 ----CPPS-----NQQC-IEMTEETLGRTEETVNPPTDQQCIEMAEEILTPPINQQWSQM 333
                        N  C I +T      T+      T    ++     LTP         
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--------- 300

Query: 334 SEETLSQPSNQQFIKMTEDTLYERTVQDSKVVIAH-AKLTEDELCPITQAIYMGSSMQSL 392
            +E  S      ++      L    +  +   ++  A+   D L       ++       
Sbjct: 301 -DEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD---- 353

Query: 393 KLMEIPQSLI-----SEIQQ--GNRVLFRGDIGDPP-VLCT--QRQTFQVKE-------- 434
           KL  I +S +     +E ++      +F      P  +L                     
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 435 ----AETSNSLTL-IRGLYFPDHPRIKENNTETERELVRQNKKKETLCPNQ--------- 480
                +     T+ I  +Y     ++ EN     R +V      +T   +          
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKL-ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 481 ---------QCIEMAEETLSQPSIQQD-------------------------NQMD---K 503
                    + IE  E       +  D                          Q+     
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 504 EILSPPPSNQQRIKMTEETLSTTEEIL--SPQSN-KQSIEMTK-ETLDLTSNRQ 553
            I    P  ++ +    + L   EE L  S  ++  +   M + E +   +++Q
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00