Psyllid ID: psy7220

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MLVTSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR
Secondary Structure (PSIPRED)
cccccHHEEEEccEEEEccccccEEEEEEEEcccEEEEEEccccccHHHHHHHHHcccccccEEEEEEEEcccccccHHc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEccEEEcccEEEEEcEEEEEcccEEEEEEEcccccHHHHHHHHHccccccccEEEEEcccccccHHHcc
Coil and Loop (DISEMBL)
MLVTSLqtvdshletfpydtkpavnqisfgvgrgecfgllglngagkttTFKMLTgaikptsgnayvmnhsirdsmdlvr
Flexible Loop (DISEMBL)
mlvtslqtvdshletfpydtkpaVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGaikptsgnayvmnhsirdsmdlvr
Low Complexity Region (SEG)
MLVTSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR
Disordered region (IsUnstruct)
***********HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM************
Disordered Region (DISOPRED)
****SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM****
Disordered Region (DISEMBL)
MLVTSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR
Disordered Region (DISPRO)
MLVTSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLVTSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
Q99758	1704	ATP-binding cassette sub-	yes	N/A	0.725	0.034	0.603	3e-13
Q8R420	1704	ATP-binding cassette sub-	no	N/A	0.787	0.036	0.575	8e-13
Q86UK0	2595	ATP-binding cassette sub-	no	N/A	0.612	0.018	0.673	2e-12
P78363	2273	Retinal-specific ATP-bind	no	N/A	0.737	0.025	0.593	4e-12
P41233	2261	ATP-binding cassette sub-	no	N/A	0.65	0.022	0.615	6e-12
Q86UQ4	5058	ATP-binding cassette sub-	no	N/A	0.887	0.014	0.479	1e-11
O35600	2310	Retinal-specific ATP-bind	no	N/A	0.712	0.024	0.614	1e-11
Q91V24	2159	ATP-binding cassette sub-	no	N/A	0.6	0.022	0.549	1e-11
Q7TNJ2	2170	ATP-binding cassette sub-	no	N/A	0.6	0.022	0.549	1e-11
O95477	2261	ATP-binding cassette sub-	no	N/A	0.65	0.022	0.596	2e-11

>sp|Q99758|ABCA3_HUMAN ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 42/58 (72%)

Query: 23   AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
            AV+++S  V +GECFGLLG NGAGKTTTFKMLTG    TSG+A+V  H I   +  VR
Sbjct: 1398 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVR 1455

Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.
Homo sapiens (taxid: 9606)

>sp|Q8R420|ABCA3_MOUSE ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=3

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 18   YDTKP---AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
            YD +    AV++IS  V +GECFGLLG NGAGKTTTFKMLTG    TSG+A+V  +SI  
Sbjct: 1390 YDQRAPLLAVDRISLAVQKGECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISS 1449

Query: 75   SMDLVR 80
             +  VR
Sbjct: 1450 DIGKVR 1455

Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.

Mus musculus (taxid: 10090)

>sp|Q86UK0|ABCAC_HUMAN ATP-binding cassette sub-family A member 12 OS=Homo sapiens GN=ABCA12 PE=1 SV=3

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 38/49 (77%)

Query: 23   AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
            AVN IS G+  GECFGLLG+NGAGKTT FKMLTG I P+SGN  + N +
Sbjct: 2272 AVNNISIGIPAGECFGLLGVNGAGKTTIFKMLTGDIIPSSGNILIRNKT 2320

Probable transporter involved in lipid homeostasis.

Homo sapiens (taxid: 9606)

>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 43/59 (72%)

Query: 14   ETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
            + +P  + PAV+++  GV  GECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI
Sbjct: 1945 KIYPGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI 2003

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Homo sapiens (taxid: 9606)

>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 41/52 (78%)

Query: 21   KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
            KPAV++I  G+  GECFGLLG+NGAGK+TTFKMLTG    T G+A++  +SI
Sbjct: 1926 KPAVDRICIGIPPGECFGLLGVNGAGKSTTFKMLTGDTPVTRGDAFLNKNSI 1977

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Mus musculus (taxid: 10090)

>sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 2/73 (2%)

Query: 6    LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65
            L  +  H   F +    AV  IS G+ +GECFGLLG+NGAGK+TTFKML G +  TSG+A
Sbjct: 4720 LYNLSKHYRRF-FQNIIAVQDISLGIPKGECFGLLGVNGAGKSTTFKMLNGEVSLTSGHA 4778

Query: 66   YVMNHSIRDSMDL 78
             ++   + D++DL
Sbjct: 4779 -IIRTPMGDAVDL 4790

Homo sapiens (taxid: 9606)

>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus GN=Abca4 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query: 20   TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 76
            + PAV+++  GV  GECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI  S+
Sbjct: 1950 SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTSI 2006

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Mus musculus (taxid: 10090)

>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 40/51 (78%)

Query: 22   PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
            PAV+++  G+  GECFGLLG+NGAGKT+TF+M+TG   P+SG A +  H++
Sbjct: 1822 PAVDRLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV 1872

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Mus musculus (taxid: 10090)

>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 39/51 (76%)

Query: 22   PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
            PAV+ +  G+  GECFGLLG+NGAGKT+TF+M+TG   P+SG A +  H++
Sbjct: 1833 PAVDHLCLGIPPGECFGLLGVNGAGKTSTFRMVTGDTLPSSGEAVLAGHNV 1883

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Rattus norvegicus (taxid: 10116)

>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 41/52 (78%)

Query: 21   KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
            KPAV++I  G+  GECFGLLG+NGAGK++TFKMLTG    T G+A++  +SI
Sbjct: 1926 KPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSI 1977

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
427784385	2338	Putative lipid exporter abca1 [Rhipiceph	0.737	0.025	0.644	5e-14
427794409	797	Putative lipid exporter abca1, partial [	0.737	0.074	0.644	5e-14
449681672	345	PREDICTED: ATP-binding cassette sub-fami	0.712	0.165	0.684	8e-14
449673705	1206	PREDICTED: ATP-binding cassette sub-fami	0.675	0.044	0.666	1e-13
145530237	1760	hypothetical protein [Paramecium tetraur	0.737	0.033	0.633	2e-13
405950989	2208	ATP-binding cassette sub-family A member	0.725	0.026	0.603	3e-13
443734953	2255	hypothetical protein CAPTEDRAFT_226736 [	0.675	0.023	0.685	4e-13
145530173	1762	hypothetical protein [Paramecium tetraur	0.75	0.034	0.566	5e-13
291414610	1703	PREDICTED: ATP-binding cassette, sub-fam	0.725	0.034	0.655	5e-13
118363720	2778	ABC transporter family protein [Tetrahym	0.75	0.021	0.55	6e-13

>gi|427784385|gb|JAA57644.1| Putative lipid exporter abca1 [Rhipicephalus pulchellus]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 45/59 (76%)

Query: 22   PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
            PAVN +  GV  GECFGLLG+NGAGKTTTFKMLTG  + T GNA++  +SIR  +DL R
Sbjct: 1971 PAVNHLCVGVRAGECFGLLGVNGAGKTTTFKMLTGNTEVTEGNAFISGYSIRTQIDLAR 2029

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427794409|gb|JAA62656.1| Putative lipid exporter abca1, partial [Rhipicephalus pulchellus]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 45/59 (76%)

Query: 22  PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
           PAVN +  GV  GECFGLLG+NGAGKTTTFKMLTG  + T GNA++  +SIR  +DL R
Sbjct: 384 PAVNHLCVGVRAGECFGLLGVNGAGKTTTFKMLTGNTEVTEGNAFISGYSIRTQIDLAR 442

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449681672|ref|XP_002156679.2| PREDICTED: ATP-binding cassette sub-family A member 2-like, partial [Hydra magnipapillata]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 45/57 (78%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 79
          AVNQISFGV  GECFGLLGLNGAGK++ FKMLTG    T G+A+V N+SIRD +  V
Sbjct: 12 AVNQISFGVEPGECFGLLGLNGAGKSSMFKMLTGDSSITDGDAFVNNYSIRDDLKKV 68

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449673705|ref|XP_002167290.2| PREDICTED: ATP-binding cassette sub-family A member 2-like, partial [Hydra magnipapillata]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/54 (66%), Positives = 45/54 (83%)

Query: 23  AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 76
           AVNQISFGV  GECFGLLG+NGAGK++TF MLTG    T G+A+V N+SIR+++
Sbjct: 815 AVNQISFGVEHGECFGLLGVNGAGKSSTFNMLTGGTPITDGDAFVDNYSIRNNL 868

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|145530237|ref|XP_001450896.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124418529|emb|CAK83499.1| unnamed protein product [Paramecium tetraurelia]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 45/60 (75%)

Query: 21   KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
            K AV+ ISF VG GE F LLG+NGAGKTTTFK+L+G +KPTSG AYV  HS+ D +   R
Sbjct: 1377 KVAVDNISFSVGNGEVFSLLGVNGAGKTTTFKILSGELKPTSGVAYVSGHSVIDQIQDAR 1436

Source: Paramecium tetraurelia strain d4-2

Species: Paramecium tetraurelia

Genus: Paramecium

Family: Parameciidae

Order: Peniculida

Class: Oligohymenophorea

Superkingdom: Eukaryota

>gi|405950989|gb|EKC18939.1| ATP-binding cassette sub-family A member 1 [Crassostrea gigas]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 47/58 (81%)

Query: 23   AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
            AV+++  G+ +G+CFGLLG+NGAGKTTTFKMLTG I  +SG AY+  HS+ D +D+VR
Sbjct: 1889 AVDRLCVGIPKGQCFGLLGVNGAGKTTTFKMLTGDIPMSSGAAYIAGHSVIDEIDVVR 1946

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|443734953|gb|ELU18808.1| hypothetical protein CAPTEDRAFT_226736 [Capitella teleta]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 44/54 (81%)

Query: 23   AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 76
            AV+++S GV  GECFGLLG+NGAGKTTTFKMLTG IK T G+A++  HSIR  M
Sbjct: 1883 AVDRLSVGVHSGECFGLLGVNGAGKTTTFKMLTGNIKSTDGDAHLAGHSIRSEM 1936

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|145530173|ref|XP_001450864.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124418497|emb|CAK83467.1| unnamed protein product [Paramecium tetraurelia]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 46/60 (76%)

Query: 21   KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
            K AV+Q+SF + +GE FGLLG+NGAGKTTTFK+L+G +KPT G AY+   S+ D ++  R
Sbjct: 1362 KVAVDQVSFAIDQGEVFGLLGVNGAGKTTTFKILSGELKPTYGEAYIAGKSVIDDLEAAR 1421

Source: Paramecium tetraurelia strain d4-2

Species: Paramecium tetraurelia

Genus: Paramecium

Family: Parameciidae

Order: Peniculida

Class: Oligohymenophorea

Superkingdom: Eukaryota

>gi|291414610|ref|XP_002723549.1| PREDICTED: ATP-binding cassette, sub-family A member 3 [Oryctolagus cuniculus]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/58 (65%), Positives = 43/58 (74%)

Query: 23   AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
            AV++IS  V RGECFGLLG NGAGKTTTFKMLTG    TSG+A+V  HSI   +  VR
Sbjct: 1397 AVDKISLAVQRGECFGLLGFNGAGKTTTFKMLTGEESITSGDAFVGGHSISSDIGKVR 1454

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118363720|ref|XP_001015084.1| ABC transporter family protein [Tetrahymena thermophila] gi|89296851|gb|EAR94839.1| ABC transporter family protein [Tetrahymena thermophila SB210]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 47/60 (78%)

Query: 21   KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
            K AV+Q+SFG+G GECF LLG+NGAGKTTTFK+L+G I+ TSG  ++M + ++  ++  R
Sbjct: 1371 KVAVDQVSFGIGNGECFTLLGVNGAGKTTTFKILSGEIQQTSGECHIMGYDLQTQINQAR 1430

Source: Tetrahymena thermophila

Species: Tetrahymena thermophila

Genus: Tetrahymena

Family: Tetrahymenidae

Order: Hymenostomatida

Class: Oligohymenophorea

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
UNIPROTKB|H3BTP1	411	ABCA3 "ATP-binding cassette su	0.725	0.141	0.603	1.8e-12
UNIPROTKB|F5H5R2	392	ABCA4 "Retinal-specific ATP-bi	0.712	0.145	0.614	2.1e-12
UNIPROTKB|E1BM08	787	ABCA13 "Uncharacterized protei	0.625	0.063	0.68	3.5e-12
UNIPROTKB|B4DWY6	543	ABCA4 "cDNA FLJ51128, highly s	0.712	0.104	0.614	4.1e-12
ZFIN|ZDB-GENE-050517-3	2277	abca4a "ATP-binding cassette,	0.737	0.025	0.627	4.8e-12
UNIPROTKB|E1BVQ5	1706	ABCA3 "Uncharacterized protein	0.687	0.032	0.637	5.7e-12
UNIPROTKB|F1MAJ3	1447	Abca3 "Protein Abca3" [Rattus	0.787	0.043	0.590	9.8e-12
UNIPROTKB|E9PTI4	1702	Abca3 "Protein Abca3" [Rattus	0.787	0.037	0.590	1.2e-11
UNIPROTKB|E9PU20	1704	Abca3 "Protein Abca3" [Rattus	0.787	0.036	0.590	1.2e-11
MGI|MGI:1351617	1704	Abca3 "ATP-binding cassette, s	0.787	0.036	0.590	1.2e-11

UNIPROTKB|H3BTP1 ABCA3 "ATP-binding cassette sub-family A member 3" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 35/58 (60%), Positives = 42/58 (72%)

Query:    23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
             AV+++S  V +GECFGLLG NGAGKTTTFKMLTG    TSG+A+V  H I   +  VR
Sbjct:   179 AVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVR 236

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F5H5R2 ABCA4 "Retinal-specific ATP-binding cassette transporter" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query:    16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
             +P  + PAV+++  GV  GECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI
Sbjct:    66 YPGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI 122

GO:0005524 "ATP binding" evidence=IEA

GO:0004012 "phospholipid-translocating ATPase activity" evidence=IEA

GO:0006649 "phospholipid transfer to membrane" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

UNIPROTKB|E1BM08 ABCA13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 34/50 (68%), Positives = 40/50 (80%)

Query:    18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
             + +  AV  IS GV RGECFGLLG+NGAGKTTTFKMLTG + P+SG+A V
Sbjct:   461 FKSTTAVQDISLGVRRGECFGLLGVNGAGKTTTFKMLTGDLPPSSGHAVV 510

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|B4DWY6 ABCA4 "cDNA FLJ51128, highly similar to Retinal-specific ATP-binding cassette transporter" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 35/57 (61%), Positives = 42/57 (73%)

Query:    16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
             +P  + PAV+++  GV  GECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI
Sbjct:   217 YPGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI 273

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-050517-3 abca4a "ATP-binding cassette, sub-family A (ABC1), member 4a" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 37/59 (62%), Positives = 44/59 (74%)

Query:    14 ETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
             +T+    +PAV++I  GV  GECFGLLG+NGAGKTTTFKMLTG I  TSG A V  +SI
Sbjct:  1941 KTYTGTFRPAVDRICVGVSPGECFGLLGVNGAGKTTTFKMLTGDIDVTSGEADVAGYSI 1999

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BVQ5 ABCA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 37/58 (63%), Positives = 44/58 (75%)

Query:    18 YDTKP---AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
             YD++    AV++IS  V +GECFGLLG NGAGKTTTFKMLTG    TSG+A+V  HSI
Sbjct:  1393 YDSRESLLAVDRISLAVSKGECFGLLGFNGAGKTTTFKMLTGDESITSGDAFVDGHSI 1450

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0097208 "alveolar lamellar body" evidence=IEA

UNIPROTKB|F1MAJ3 Abca3 "Protein Abca3" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 9.8e-12, P = 9.8e-12
 Identities = 39/66 (59%), Positives = 47/66 (71%)

Query:    18 YDTK-P--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
             YD + P  AV++IS  V +GECFGLLG NGAGKTTTFKMLTG    TSG+A+V  +SI  
Sbjct:  1133 YDQRAPLLAVDRISLAVQKGECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISS 1192

Query:    75 SMDLVR 80
              +  VR
Sbjct:  1193 DIGKVR 1198

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|E9PTI4 Abca3 "Protein Abca3" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 39/66 (59%), Positives = 47/66 (71%)

Query:    18 YDTK-P--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
             YD + P  AV++IS  V +GECFGLLG NGAGKTTTFKMLTG    TSG+A+V  +SI  
Sbjct:  1388 YDQRAPLLAVDRISLAVQKGECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISS 1447

Query:    75 SMDLVR 80
              +  VR
Sbjct:  1448 DIGKVR 1453

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|E9PU20 Abca3 "Protein Abca3" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 39/66 (59%), Positives = 47/66 (71%)

Query:    18 YDTK-P--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
             YD + P  AV++IS  V +GECFGLLG NGAGKTTTFKMLTG    TSG+A+V  +SI  
Sbjct:  1390 YDQRAPLLAVDRISLAVQKGECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISS 1449

Query:    75 SMDLVR 80
              +  VR
Sbjct:  1450 DIGKVR 1455

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

MGI|MGI:1351617 Abca3 "ATP-binding cassette, sub-family A (ABC1), member 3" [Mus musculus (taxid:10090)]

 Score = 174 (66.3 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 39/66 (59%), Positives = 47/66 (71%)

Query:    18 YDTK-P--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
             YD + P  AV++IS  V +GECFGLLG NGAGKTTTFKMLTG    TSG+A+V  +SI  
Sbjct:  1390 YDQRAPLLAVDRISLAVQKGECFGLLGFNGAGKTTTFKMLTGEETITSGDAFVGGYSISS 1449

Query:    75 SMDLVR 80
              +  VR
Sbjct:  1450 DIGKVR 1455

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0006810 "transport" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0097208 "alveolar lamellar body" evidence=ISO

GO:0097233 "alveolar lamellar body membrane" evidence=ISO;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63TX3	NODI_BURPS	3, ., 6, ., 3, ., -	0.6170	0.5875	0.1546	yes	N/A
P26050	NODI_BRAJA	3, ., 6, ., 3, ., -	0.5090	0.6875	0.1797	yes	N/A
Q1BWI2	NODI_BURCA	3, ., 6, ., 3, ., -	0.6086	0.575	0.1513	yes	N/A
Q62K72	NODI_BURMA	3, ., 6, ., 3, ., -	0.6170	0.5875	0.1546	yes	N/A
P0A9U2	YBHF_SHIFL	No assigned EC number	0.5471	0.6625	0.0916	yes	N/A
Q54DT1	ABCA9_DICDI	No assigned EC number	0.5438	0.7125	0.0674	yes	N/A
Q39GT7	NODI_BURS3	3, ., 6, ., 3, ., -	0.5869	0.575	0.1513	yes	N/A
Q1PEH6	AB3A_ARATH	No assigned EC number	0.5423	0.7375	0.0633	yes	N/A
Q99758	ABCA3_HUMAN	No assigned EC number	0.6034	0.725	0.0340	yes	N/A
Q13ZJ1	NODI_BURXL	3, ., 6, ., 3, ., -	0.5869	0.575	0.1513	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	80
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	8e-29
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-24
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	8e-22
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	1e-19
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	8e-18
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	2e-17
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-17
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	2e-17
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-16
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-16
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	3e-16
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	5e-16
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	1e-15
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	1e-15
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	1e-15
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	3e-15
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	8e-15
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	9e-15
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	1e-14
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	1e-14
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-14
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	3e-14
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	3e-14
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	4e-14
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	5e-14
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	1e-13
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	1e-13
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	3e-13
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	3e-13
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	4e-13
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	9e-13
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	9e-13
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	2e-12
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	2e-12
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	2e-12
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	3e-12
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	4e-12
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	4e-12
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	8e-12
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	1e-11
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-11
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	3e-11
COG1123	539	COG1123, COG1123, ATPase components of various ABC	5e-11
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	5e-11
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	6e-11
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	6e-11
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	7e-11
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	8e-11
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	9e-11
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	1e-10
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-10
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	1e-10
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	2e-10
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	2e-10
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	2e-10
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	3e-10
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-10
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	4e-10
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	5e-10
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	6e-10
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	8e-10
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	8e-10
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	9e-10
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	1e-09
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-09
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	1e-09
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-09
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	2e-09
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-09
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	2e-09
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-09
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	3e-09
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	3e-09
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	4e-09
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	5e-09
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	5e-09
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	5e-09
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	5e-09
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	6e-09
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	7e-09
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	8e-09
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	8e-09
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	8e-09
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	1e-08
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-08
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	1e-08
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	2e-08
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	2e-08
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-08
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	2e-08
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	2e-08
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	2e-08
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-08
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-08
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-08
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-08
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	3e-08
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	3e-08
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	3e-08
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	5e-08
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	6e-08
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	7e-08
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	7e-08
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	7e-08
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	8e-08
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	8e-08
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	9e-08
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	1e-07
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	1e-07
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	1e-07
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	1e-07
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	1e-07
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	2e-07
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-07
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	2e-07
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	3e-07
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	3e-07
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	3e-07
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	3e-07
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	5e-07
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	6e-07
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	6e-07
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	6e-07
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	6e-07
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	7e-07
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	7e-07
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	8e-07
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	9e-07
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	9e-07
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	1e-06
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-06
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-06
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-06
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	2e-06
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-06
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	2e-06
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	2e-06
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	2e-06
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	2e-06
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	2e-06
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	2e-06
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-06
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	2e-06
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	3e-06
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	3e-06
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	3e-06
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	4e-06
COG4133	209	COG4133, CcmA, ABC-type transport system involved	5e-06
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	5e-06
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	6e-06
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	7e-06
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	8e-06
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	1e-05
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-05
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	1e-05
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	1e-05
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	1e-05
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	2e-05
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-05
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-05
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	2e-05
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	2e-05
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	2e-05
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	2e-05
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-05
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	3e-05
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	3e-05
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	3e-05
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	4e-05
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	4e-05
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	5e-05
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	5e-05
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	5e-05
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	5e-05
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	6e-05
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	8e-05
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	8e-05
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	8e-05
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	9e-05
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	9e-05
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	1e-04
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	1e-04
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	1e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-04
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	2e-04
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	2e-04
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-04
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	2e-04
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-04
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	2e-04
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	2e-04
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	3e-04
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	3e-04
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	3e-04
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	3e-04
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	4e-04
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	4e-04
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	4e-04
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	4e-04
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	4e-04
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	4e-04
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	6e-04
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	6e-04
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	7e-04
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	7e-04
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	7e-04
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	7e-04
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	8e-04
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	8e-04
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	8e-04
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	8e-04
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	9e-04
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	0.001
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	0.001
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	0.001
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.001
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	0.001
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	0.001
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	0.002
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	0.002
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	0.002
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	0.002
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	0.002
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	0.002
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	0.003
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	0.003
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	0.003
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	0.003
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	0.003
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	0.003
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	0.003
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	0.003

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  101 bits (255), Expect = 8e-29
 Identities = 38/66 (57%), Positives = 46/66 (69%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          T+   TKPAV+ +S  V +GE FGLLG NGAGKTTT KMLTG ++PTSG AY+  +SIR 
Sbjct: 9  TYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT 68

Query: 75 SMDLVR 80
               R
Sbjct: 69 DRKAAR 74

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 90.1 bits (225), Expect = 1e-24
 Identities = 28/63 (44%), Positives = 39/63 (61%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
          Y  K A++ IS  V +GE +GLLG NGAGKTT  K++ G +KP SG   V+   I+   +
Sbjct: 10 YGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPE 69

Query: 78 LVR 80
           V+
Sbjct: 70 EVK 72

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 85.1 bits (211), Expect = 8e-22
 Identities = 30/60 (50%), Positives = 38/60 (63%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
          K A++ +SF V  GE FGLLG NGAGKTT  K+L G +KPTSG   V+ + +      VR
Sbjct: 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVR 77

Length = 293

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 78.2 bits (193), Expect = 1e-19
 Identities = 36/63 (57%), Positives = 39/63 (61%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
          Y    AV  +SF V RGE FGLLG NGAGKTTT KMLT  +KPTSG A V  H +     
Sbjct: 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPR 69

Query: 78 LVR 80
           VR
Sbjct: 70 EVR 72

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 73.5 bits (181), Expect = 8e-18
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
          Y    A+  ISF + +GE  G +G NGAGKTTT K+L+G ++PTSG   V 
Sbjct: 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA 81

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 72.6 bits (179), Expect = 2e-17
 Identities = 27/55 (49%), Positives = 33/55 (60%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          Y  +  VN +S  V +GE  GLLG NGAGKTTTF M+ G +KP SG   +    I
Sbjct: 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI 64

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 74.7 bits (183), Expect = 2e-17
 Identities = 35/66 (53%), Positives = 45/66 (68%)

Query: 14   ETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
            + +   + PAV+++  GV  GECFGLLG+NGAGKTTTFKMLTG    TSG+A V   SI 
Sbjct: 1945 KVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL 2004

Query: 74   DSMDLV 79
             ++  V
Sbjct: 2005 TNISDV 2010

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 73.2 bits (180), Expect = 2e-17
 Identities = 30/63 (47%), Positives = 38/63 (60%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
          Y    AV+ ++F V  GE FG LG NGAGKTTT +MLT  ++PTSG A V  + +     
Sbjct: 3  YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPR 62

Query: 78 LVR 80
           VR
Sbjct: 63 KVR 65

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 68.8 bits (169), Expect = 2e-16
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          +F Y  + A++ +S  +  GE   L+G NG+GK+T  + + G +KPTSG   +    I  
Sbjct: 6  SFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK 65

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 69.6 bits (171), Expect = 2e-16
 Identities = 26/55 (47%), Positives = 33/55 (60%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          +    A++ ISF V +GE FGLLG NGAGKTTT +M+ G I P SG        +
Sbjct: 10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL 64

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 69.9 bits (172), Expect = 3e-16
 Identities = 25/46 (54%), Positives = 30/46 (65%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          Y  +  VN +S  V  GE  GLLG NGAGKTTTF M+ G ++P SG
Sbjct: 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59

Length = 243

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 68.4 bits (168), Expect = 5e-16
 Identities = 25/46 (54%), Positives = 31/46 (67%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          Y  K  ++ IS  V +GE +G LG NGAGKTTT K++ G IKP SG
Sbjct: 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG 55

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 68.9 bits (169), Expect = 1e-15
 Identities = 27/53 (50%), Positives = 33/53 (62%)

Query: 11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +H       +  AV  ISF + +GE  G LG NGAGK+TT KMLTG + PTSG
Sbjct: 27 NHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG 79

Length = 325

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 67.1 bits (165), Expect = 1e-15
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          +  Y  +  ++ +S  +  GE  G+LG NGAGK+T  K L G +KP+SG   +    +  
Sbjct: 6  SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS 65

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 68.5 bits (168), Expect = 1e-15
 Identities = 28/46 (60%), Positives = 34/46 (73%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +  K AV+ ISF V  GE FGLLG NGAGKTTTF+M+ G ++PT G
Sbjct: 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG 57

Length = 300

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 67.1 bits (165), Expect = 3e-15
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          A++ +SF V  GE  GL+G NGAGKTT F +++G ++PTSG
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG 55

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 66.8 bits (163), Expect = 8e-15
 Identities = 28/63 (44%), Positives = 35/63 (55%)

Query: 18  YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
           Y  K  VN +SF V  GECFGLLG NGAGK+T  +M+ G   P +G   V+   +     
Sbjct: 51  YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110

Query: 78  LVR 80
           L R
Sbjct: 111 LAR 113

Length = 340

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 66.4 bits (162), Expect = 9e-15
 Identities = 28/46 (60%), Positives = 32/46 (69%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          Y  K  V+ +SF V RGECFGLLG NGAGKTTT +ML G   P +G
Sbjct: 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62

Length = 306

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 64.7 bits (158), Expect = 1e-14
 Identities = 26/45 (57%), Positives = 32/45 (71%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          AV+ +SF V  GE  GLLG NGAGKTTT +ML G ++P +G A V
Sbjct: 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 63.6 bits (156), Expect = 1e-14
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----VMNHSIRDSM 76
           A++ +S  V RGE   LLG NGAGK+T  K+L+G  KP SG        V   S RD+ 
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDAR 73

Query: 77 DL 78
            
Sbjct: 74 RA 75

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 65.2 bits (159), Expect = 2e-14
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          Y T+ A++++SF   +G   G LG NGAGK+TT K++TG + P SG+  V    +
Sbjct: 12 YGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 64.5 bits (158), Expect = 3e-14
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
              AV+ +SF +  GE  GL+G +G GK+T  +++ G  +PTSG        I  
Sbjct: 24 RYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK 79

Length = 268

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 64.5 bits (158), Expect = 3e-14
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          +F Y  KP ++ +SF + +GE  G+LG NG+GK+T  K L G +KP SG   +    I  
Sbjct: 9  SFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS 68

Query: 75 --SMDLVR 80
              +L +
Sbjct: 69 LSPKELAK 76

Length = 258

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 64.0 bits (156), Expect = 4e-14
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
          AV  +SF    GE  GLLG NGAGKTT  +M+   + P SG   +      D +D VR
Sbjct: 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI------DGVDTVR 68

Length = 245

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 63.8 bits (156), Expect = 5e-14
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
               A+  ISF + +GE  G++G NGAGK+T  K++ G  KPTSG   V
Sbjct: 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV 86

Length = 249

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
          AVN IS  V +   +GLLG NGAGK+T  KM+TG ++PTSG      H
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 62.7 bits (153), Expect = 1e-13
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
          +F Y  + A++ +SF V  G    LLG NGAGK+T F +LT       G   V  H +R
Sbjct: 8  SFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR 66

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 61.8 bits (151), Expect = 3e-13
 Identities = 25/50 (50%), Positives = 30/50 (60%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          AVN +S  V  GE  GL+G NGAGKTT F ++TG  KP+SG        I
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI 68

Length = 250

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 62.3 bits (151), Expect = 3e-13
 Identities = 30/63 (47%), Positives = 36/63 (57%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
          Y  K  VN +SF + RGECFGLLG NGAGK+T  +ML G I P  G   V+   +     
Sbjct: 14 YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRAR 73

Query: 78 LVR 80
          L R
Sbjct: 74 LAR 76

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 61.0 bits (149), Expect = 4e-13
 Identities = 24/64 (37%), Positives = 32/64 (50%)

Query: 5  SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
          SL+ +             A+  +SF V RGE  GL+G NGAGK+T  ++L G   P SG 
Sbjct: 19 SLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT 78

Query: 65 AYVM 68
            V 
Sbjct: 79 VTVR 82

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 59.8 bits (146), Expect = 9e-13
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          ++P   +PA++ IS  + +GE   ++G NG+GK+T  ++L G + PTSG   V    +  
Sbjct: 8  SYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTK 67

Query: 75 S 75
           
Sbjct: 68 L 68

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 61.0 bits (149), Expect = 9e-13
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-----AYVMNHSIRDSM 76
           A++ +S  V  GE   LLG NGAGK+T  K+L+G   P SG        V   S RD++
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81

Query: 77 DL 78
            
Sbjct: 82 AA 83

Length = 500

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 57.8 bits (141), Expect = 2e-12
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +  Y  K  +  IS  +  G+  GL+G NGAGK+T  K++ G ++P  G
Sbjct: 7  SKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG 55

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 59.1 bits (144), Expect = 2e-12
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          T  Y   P +  +SF V  GE   ++G NGAGK+T  K + G +KPTSG+  V
Sbjct: 6  TVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 58.7 bits (143), Expect = 2e-12
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          T  Y  K A++ +S  +G G  +GLLG NGAGKTT  ++L     P+SG   +    +  
Sbjct: 7  TKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK 65

Query: 75 SMDLVR 80
              +R
Sbjct: 66 QPQKLR 71

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 58.6 bits (143), Expect = 3e-12
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           +L    Y     +  +S  V  GE   LLG NGAGKTT  K + G + P SG
Sbjct: 4  ENLNAG-YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG 55

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.4 bits (142), Expect = 4e-12
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          T  Y  +P +  IS  V +GE   L+G NGAGK+T  K + G +KP+SG   +    +R 
Sbjct: 11 TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK 70

Length = 254

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 58.8 bits (143), Expect = 4e-12
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          +  Y  K AV+ ++  +  GE   L+G +G+GKTTT KM+   I+PTSG   +    I D
Sbjct: 8  SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67

Query: 75 SMDLVR 80
           +D V 
Sbjct: 68 -LDPVE 72

Length = 309

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 58.3 bits (141), Expect = 8e-12
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 23  AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
           AV+ +S  V  GE FG++G +GAGKTT  K++ G ++PTSG   V
Sbjct: 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV 343

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.9 bits (138), Expect = 1e-11
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 15 TFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +F Y   K A+  +S  + +GE   L+G NG+GK+T  K+L G +KPTSG
Sbjct: 10 SFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59

Length = 235

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 57.3 bits (139), Expect = 2e-11
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
          Y  +P +  +S  +  GE  GL+G NGAGK+T  K+L G ++P SG 
Sbjct: 13 YGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59

Length = 530

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 56.2 bits (136), Expect = 3e-11
 Identities = 22/41 (53%), Positives = 25/41 (60%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          AVN ++  V   E   L+G NGAGKTT F  LTG  KPT G
Sbjct: 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60

Length = 255

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 56.0 bits (136), Expect = 5e-11
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 21  KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
             AV+ +SF +  GE  GL+G +G+GK+T  ++L G + P+SG+      
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQ 353

Length = 539

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 55.6 bits (135), Expect = 5e-11
 Identities = 22/46 (47%), Positives = 27/46 (58%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          Y    A+  +S  V RGE   LLG NGAGKTT  K + G ++P SG
Sbjct: 13 YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG 58

Length = 237

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 55.7 bits (135), Expect = 6e-11
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 19  DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
             +  +  +SF + RG+   ++G NGAGK+T  K+L G + P SG
Sbjct: 333 GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377

Length = 530

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 55.2 bits (134), Expect = 6e-11
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          Y +  A++ +S  V  GE   LLG +G GKTT  +++ G  +P SG
Sbjct: 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG 55

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 54.9 bits (133), Expect = 7e-11
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          Y    A++ +S  +  GE F LLG +G GKTT  +++ G   PTSG   +    I
Sbjct: 10 YGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 54.8 bits (133), Expect = 8e-11
 Identities = 18/51 (35%), Positives = 32/51 (62%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           A++ +SF + +GE  GL+G +G+GK+T  + + G +KPTSG+       +
Sbjct: 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDL 69

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 55.2 bits (134), Expect = 9e-11
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          A + +S  V +GE   LLG NGAGK+T  K+L G  +P SG   V
Sbjct: 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63

Length = 501

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 55.2 bits (133), Expect = 1e-10
 Identities = 19/47 (40%), Positives = 31/47 (65%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          K  VN     + +GE F ++GL+G+GK+TT +ML   I+PT+G  ++
Sbjct: 6  KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFI 52

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 55.0 bits (133), Expect = 1e-10
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +    AV+ IS  + +GE   LLG +G GKTT  +M+ G  +P+SG
Sbjct: 15 FGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60

Length = 352

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
            VN +S  V  GE F ++GL+G+GK+T  + +   I+PTSG   +
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI 83

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
            A+N +S  + RGE  G++G +G+GK+T  ++L G  KP+SG+  +
Sbjct: 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL 66

Length = 252

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
           + K  +  +S+ V  GE + ++G NGAGKTT   +LTG   P+SG+  ++     
Sbjct: 41 RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFG 96

Length = 257

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 54.1 bits (131), Expect = 2e-10
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
          T+P + K A+  +S  +  GE   L+G +GAGK+T  + L G ++PTSG+  +    I 
Sbjct: 9  TYP-NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDIN 66

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 54.2 bits (131), Expect = 3e-10
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 11/69 (15%)

Query: 18  YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN---------AYVM 68
           +  K  ++ +SF +  G   G++G NGAGK+T F+M+TG  +P SG          AYV 
Sbjct: 332 FGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYV- 390

Query: 69  NHSIRDSMD 77
               RD++D
Sbjct: 391 -DQSRDALD 398

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 52.4 bits (127), Expect = 3e-10
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 15 TFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          +F Y    KP +  +S  +  GE   ++G +G+GK+T  K+L     PTSG   +    +
Sbjct: 7  SFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL 66

Query: 73 RD 74
          RD
Sbjct: 67 RD 68

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.5 bits (129), Expect = 4e-10
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          +F Y      A+  +SF +  GE   +LG NG+GK+T  K+LTG +KP SG   +   +I
Sbjct: 14 SFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI 73

Query: 73 -RDSMDLVR 80
           ++++  +R
Sbjct: 74 SKENLKEIR 82

Length = 271

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 53.2 bits (129), Expect = 5e-10
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 11/59 (18%)

Query: 28  SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN---------AYVMNHSIRDSMD 77
           SF +  G   G++G NGAGK+T FKM+TG  +P SG          AYV     RD++D
Sbjct: 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS--RDALD 400

Length = 556

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 52.7 bits (127), Expect = 6e-10
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 15 TFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
          T  Y   K AVN ++  + +GE   L+G +G+GKTTT KM+   I+PTSG  ++    IR
Sbjct: 7  TKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIR 66

Query: 74 DSMDLVR 80
          +  D V 
Sbjct: 67 E-QDPVE 72

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 52.7 bits (126), Expect = 8e-10
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 21   KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
            +PAV++++      +    LG NGAGKTTT  +LTG + PTSG   V    I  ++D VR
Sbjct: 943  RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 52.2 bits (126), Expect = 8e-10
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
          A+N +S  V  GE   ++G NGAGKTT   ++TG  +P  G+       + 
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLT 67

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 52.6 bits (127), Expect = 9e-10
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 15  TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR- 73
            +P    PA++ +S  +  GE   ++G  G+GK+T  K+L G  +PT G+  +    IR 
Sbjct: 472 AYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531

Query: 74  -DSMDLVR 80
            D  DL R
Sbjct: 532 IDPADLRR 539

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 17  PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DS 75
           P   KP +  ISF +  GE  G++G +G+GK+T  ++L G   PTSG       S+R D 
Sbjct: 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG-------SVRLDG 397

Query: 76  MDL 78
            DL
Sbjct: 398 ADL 400

Length = 580

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          +    A++ ++  +  GE   LLG +G GKTTT +M+ G  +PTSG  Y+
Sbjct: 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 6  LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          L+T D    ++P  T+ A+  I+F   +GE   LLG NGAGK+T F    G +KPTSG
Sbjct: 2  LETRDLKY-SYPDGTE-ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG 57

Length = 275

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
          +     +  I+  V +GE   +LG +G GK+T  +++ G  KPTSG   +  
Sbjct: 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG 64

Length = 248

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 50.9 bits (122), Expect = 2e-09
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +P   +  +  ++F   RGE   LLG NGAGK+T    L G ++P SG
Sbjct: 1  YPGGPE-VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG 47

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          + +   +  ++  +  GE   LLG +G GK+T  +M+ G  +PTSG   +    + D
Sbjct: 13 FGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69

Length = 338

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 51.3 bits (124), Expect = 2e-09
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          +  ++ +S  +  GE   +LG NGAGK+T  + L+G + P SG   +    + D
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD 68

Length = 258

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 50.6 bits (122), Expect = 2e-09
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          Y  K  +N +S  +  GE   LLG +G+GK+T  + + G  +P SG+  +
Sbjct: 10 YGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
          ++P    PA++ +S  +  GE   ++G  G+GK+T  K+L G  KPTSG+  +    IR
Sbjct: 11 SYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR 69

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 15 TFPYD---TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
          TF Y     K  +N +SF V +GE   ++G NG+GK+TT +++ G ++  SG   +   
Sbjct: 11 TFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD 69

Length = 279

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 50.2 bits (121), Expect = 4e-09
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
             A+  +S  + +GE   ++G +G+GK+T   +L G  +PTSG   V    I  
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISK 70

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 49.9 bits (119), Expect = 5e-09
 Identities = 23/58 (39%), Positives = 30/58 (51%)

Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
          F Y  +P + QISF +  G    L G NGAGKTT  K++ G + P  G       SI+
Sbjct: 9  FDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK 66

Length = 200

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           +P     A+  +SF V  GE   ++G NG+GK+T  K+L G + P +G
Sbjct: 14 RYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62

Length = 279

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 50.3 bits (121), Expect = 5e-09
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
          A++ ISF    G+   L+G NGAGK+T  K+L+G  +P +G+
Sbjct: 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60

Length = 501

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 49.8 bits (120), Expect = 5e-09
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          T  +  +  +  +   V RGE   ++G +G+GK+T  +++ G ++P SG   +    I  
Sbjct: 7  TKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISG 66

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 50.3 bits (121), Expect = 6e-09
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 15  TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
            +  D  P +  +S  +  GE   ++G +G+GK+T  K+L G  KP  G   +    + D
Sbjct: 480 RYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND 539

Query: 75  -SMDLVR 80
             +  +R
Sbjct: 540 IDLASLR 546

Length = 709

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 49.7 bits (119), Expect = 7e-09
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
          P +  +S  V  GEC  L G +GAGK+T  K L     P SG   V  H     +DL +
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV-RH-EGAWVDLAQ 78

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 49.4 bits (119), Expect = 8e-09
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
             A+  IS  V  GE   L+G +G GK+T  +++ G  +PTSG   V    +  
Sbjct: 16 AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG 70

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.6 bits (119), Expect = 8e-09
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          T+P     A+  ++  + +GE   ++G +GAGK+T  + L G + PTSG        I
Sbjct: 12 TYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQI 68

Length = 258

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 49.8 bits (119), Expect = 8e-09
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          T  +D + AV+ +S  + +GE F LLG +G GK+T  +ML G  +PT+G
Sbjct: 26 TKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG 74

Length = 377

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 49.5 bits (119), Expect = 1e-08
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVR 80
           AV+ +SF + +GE  G++G +G+GK+   K + G +     NA ++   I  D  DL+ 
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK--PNARIVGGEILFDGKDLLS 76

Length = 316

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 17  PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DS 75
           P   KP +  ISF +  GE   ++G +G+GK+T  +++ G   PTSG       S+R D 
Sbjct: 327 PGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG-------SVRLDG 379

Query: 76  MDL 78
            DL
Sbjct: 380 ADL 382

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
           P +  +S  +  GE  GLLG +G GK+T  ++L G  KP  G 
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGT 67

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 78
          K A++ ++  V +GE   +LG NG+GK+T  K +   + P+ G  YV      D  +L
Sbjct: 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80

Length = 280

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
          AV  +SF +  G+   ++G NG+GK+T  KML G I+PTSG   + +H
Sbjct: 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDH 75

Length = 267

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 20/68 (29%), Positives = 37/68 (54%)

Query: 5  SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
           L+ V          T  A++ +S  + +GE FG++G +GAGK+T  +++    +PTSG+
Sbjct: 3  ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGS 62

Query: 65 AYVMNHSI 72
           +V    +
Sbjct: 63 VFVDGQDL 70

Length = 339

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          Y  +  V  +S  V  GE  GLLG NGAGKTTTF M+ G +   +GN  + +  I
Sbjct: 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI 67

Length = 241

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
           VN  S  V  GE F ++GL+G+GK+T  ++L   I+PT G   V      D  D+ +
Sbjct: 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILV------DGKDIAK 94

Length = 386

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           A+  +S  V +GE FG++G +GAGK+T  + + G  +PTSG+  V    +
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL 69

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 20/49 (40%), Positives = 29/49 (59%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
          A+  ++  V  GE   LLG NGAGK+T  K+L+G  +PT G   + N +
Sbjct: 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN 68

Length = 510

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
          +    A++ IS  +  GE   LLG +GAGK+T  +++ G   P +G   +    + D 
Sbjct: 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDV 69

Length = 345

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
           +P   + A+  I+  +  GE   ++G +GAGK+T  + +   ++P+SG+  +    I  
Sbjct: 10 VYPNGKQ-ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITK 68

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 47.3 bits (113), Expect = 3e-08
 Identities = 18/66 (27%), Positives = 34/66 (51%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          ++P   +  +  +S  + +GE   LLG +G+GK+T  ++LTG +KP  G   +    + D
Sbjct: 9  SYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSD 68

Query: 75 SMDLVR 80
              + 
Sbjct: 69 LEKALS 74

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
          A+N +SF V  GE   L+G NGAGKTT   ++TG  +P  G             DL +
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLF-----DGDTDLTK 72

Length = 249

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 14 ETFPYDTK-------PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
          +TF Y T         AV  +SF +  G+   ++G NG+GK+T  KML G I+PTSG   
Sbjct: 12 KTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELL 71

Query: 67 VMNH 70
          + +H
Sbjct: 72 IDDH 75

Length = 267

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 47.6 bits (114), Expect = 3e-08
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
            + A+  +SF + +GE   L G +GAGK+T  K++ G  +PT G   V  H +
Sbjct: 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDL 66

Length = 223

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
          T+P   KPA+N ISF + RG    L+G NG+GK+T  K++ G + P       + 
Sbjct: 14 TYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKIT 68

Length = 282

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.3 bits (113), Expect = 6e-08
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          P++ K A++ ++  +  GE  GL+G  G+GK+T  + L G +KPTSG   +    I D
Sbjct: 17 PFEKK-ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD 73

Length = 287

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 47.3 bits (113), Expect = 7e-08
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 18  YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
            D K  V   S  V RG+   L+G NG GKTT  K++ G ++  SG  + 
Sbjct: 329 IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC 378

Length = 635

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.0 bits (112), Expect = 7e-08
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          P +  +S  V  GEC  L G +G+GK+T  + L     P  G   V
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV 70

Length = 235

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 46.8 bits (112), Expect = 7e-08
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          TF Y  D  P +  IS  +  GE   L+G +G+GK+T   ++       SG   +  H +
Sbjct: 7  TFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV 66

Query: 73 RD 74
          RD
Sbjct: 67 RD 68

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 46.4 bits (111), Expect = 8e-08
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          P    P +  +SF +  GE   ++G +G+GK+T  +++ G ++PTSG
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG 57

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 46.7 bits (112), Expect = 8e-08
 Identities = 18/46 (39%), Positives = 23/46 (50%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          Y     +  +S  V +GE   +LG NG GKTT  K L G +   SG
Sbjct: 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 46.3 bits (111), Expect = 9e-08
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
           K AV  +SF V  GE  G+ GL G G+T   + L G   P SG   +    + 
Sbjct: 12 VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT 65

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
          KP    IS   G G  +GL+G NG GK+T  K+L G ++P++GN
Sbjct: 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGN 57

Length = 530

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          +K A+N I+F   R     ++G NGAGK+T F+   G +KPTSG+  +    I
Sbjct: 16 SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI 68

Length = 277

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +S  +  GE   L G NGAGKTT  K+L G IK +SG
Sbjct: 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG 55

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          T+P  T  A++ I+  +  GE   L+G +GAGK+T  K++     PTSG
Sbjct: 9  TYPNGT-AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG 56

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 18/31 (58%), Positives = 20/31 (64%)

Query: 33  RGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
            GE  G+LG NG GKTT  K+L G IKP  G
Sbjct: 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396

Length = 591

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
          A++ IS     G+  GL+G+NG+GK+T   ++ G++ PT G 
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGK 80

Length = 264

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 33  RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
            GE  G++G NG GKTT  K+L G +KP  G 
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE 395

Length = 590

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
            K A+N +S  +  G+   ++G NGAGK+T    + G +KPTSG
Sbjct: 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61

Length = 263

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
            E  G+LG NG GKTT  KML G +KP  G+  +   ++
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query: 20  TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           + P VN +SF + +GE  G+ GL GAG+T   K+L GA+  TSG   +  H +
Sbjct: 264 SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV 316

Length = 501

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
          A++ +S  V  GE   L G NGAGK+T  K+L+G
Sbjct: 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53

Length = 506

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 15  TFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
           +F Y  K P +  ISF +  GE   ++G +G+GK+T  K+L     PTSG   +    IR
Sbjct: 335 SFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIR 394

Query: 74  D 74
           D
Sbjct: 395 D 395

Length = 567

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 15  TFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
           TF Y D   +V  I+  + RGE   L+G NG+GK+T   +LTG  +P SG   +
Sbjct: 329 TFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382

Length = 547

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 44.5 bits (106), Expect = 6e-07
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 22  PAVNQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           P + + ISF V  GE  GL GL GAG++   K+L GA + T+G
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG 308

Length = 501

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 44.2 bits (105), Expect = 6e-07
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           A++ +S  + +GE   L G +GAGKTT  K+L GA+ P+ G   +    +
Sbjct: 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDV 66

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 44.1 bits (105), Expect = 6e-07
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          T  +  +  ++ +   V RGE   +LG +G+GK+T  +++ G ++P  G   +    I  
Sbjct: 15 TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74

Length = 263

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 44.3 bits (105), Expect = 6e-07
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 4  TSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           S+  +      F      A+  IS  V +GE   LLG +G GKTT  +++ G  + T+G
Sbjct: 5  LSIDNIRKRFGAFT-----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG 59

Query: 64 NAYVMNHSI 72
            Y     I
Sbjct: 60 TIYQGGRDI 68

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 44.3 bits (105), Expect = 7e-07
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 15  TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
            +P   +PA++ IS  +  GE   L+G +G+GK+T   ++    +P SG   +  H + D
Sbjct: 339 RYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 44.5 bits (105), Expect = 7e-07
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          A+N ISF V  GE  G++GLNG+GK+T   ++ G   P  G
Sbjct: 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG 79

Length = 549

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 15  TFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           +F YD ++  V  +SF    G+   ++G  GAGK+T   +L     P SG
Sbjct: 341 SFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390

Length = 588

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 43.9 bits (104), Expect = 9e-07
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +S  V RG+ F +LG  G+GK+   + + G IKP SG
Sbjct: 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSG 54

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.1 bits (104), Expect = 9e-07
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          D   A+  I+  + +GE   +LG NGAGK+T F+ L G +KP+SG
Sbjct: 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG 61

Length = 283

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          ++ +S  +  GE   +LG NGAGK+T  K L+G + P SG   +    +
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65

Length = 259

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 15  TFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
           +F Y  +   A+   +  + +GE   +LG +G+GK+T  ++L GA  P  G+
Sbjct: 343 SFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS 394

Length = 573

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 15  TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
            +P   +PA+  +SF V  GE   L+G +GAGK+T   +L G + PT G
Sbjct: 330 AYP-GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG 377

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 42.9 bits (102), Expect = 2e-06
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 13  LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----V 67
           LE         V  +SF V  GE  G+ GL GAG+T   + L GA   +SG        V
Sbjct: 264 LEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPV 323

Query: 68  MNHSIRDSMDL 78
              S RD++  
Sbjct: 324 RIRSPRDAIKA 334

Length = 500

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 15  TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           T  +D  P    ++  +  GE   ++G NG GKTT  + L G ++P SG
Sbjct: 326 TKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG 374

Length = 530

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
          +D K  ++ +   +  GE   LLG +G GKTT  +++ G   P SG   
Sbjct: 24 FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72

Length = 375

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 18  YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           Y  +  ++ I   +  G   GLLG NGAGK+T  K+L G + P SG
Sbjct: 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG 367

Length = 638

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
              +N IS  V  GE   + G +G GK+T  K++   I PTSG   
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61

Length = 223

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 15 TFPYDTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
           FP   +   A+N +S  +  GE FG++G +GAGK+T  + +    +PTSG   V
Sbjct: 10 VFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64

Length = 343

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 13 LETFPY---DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          LE   Y   D  PA+  I+  + +GE  G++G NG+GK+T    L G ++P  G   V
Sbjct: 4  LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61

Length = 274

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
           A++ +S  +  GE   LLG +G+GKTT  +++ G  +P SG 
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          +F Y  D    +  +SF + +G+   ++G NG+GK+T  K++ G  K  SG  +  N +I
Sbjct: 14 SFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI 73

Query: 73 RD 74
           D
Sbjct: 74 TD 75

Length = 269

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 42.5 bits (101), Expect = 2e-06
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          +   A+  ++  +  GE   ++G +G+GK+T   +L G  KPTSG   +    +  
Sbjct: 16 EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTK 71

Length = 226

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 18/39 (46%), Positives = 21/39 (53%)

Query: 29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
              +GE  GLLG NGAGKTT  + + G I P  G   V
Sbjct: 1  LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKV 39

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMN 69
             Y  K A+  IS  + +GE   L+G +G GK+T  ++L          P  G   +  
Sbjct: 7  NVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG 66

Query: 70 HSIRD 74
            I D
Sbjct: 67 KDIYD 71

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
            ++ +   V  G   GL+G NGAGKTT  + + G + PT+G   V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62

Length = 402

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 15 TFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
           F YD  KP +  I+F +  GE   ++G  GAGKTT   +L     P  G   +    IR
Sbjct: 9  NFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR 68

Query: 74 D 74
          D
Sbjct: 69 D 69

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 24  VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
           V  I+  + RGE   L+G NG+GK+T   +LTG  +P SG   +
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382

Length = 546

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
          + +SF +  GE   + G NGAGKTT  ++L G ++P +G  Y     I++  +   
Sbjct: 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYH 74

Length = 209

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 41.4 bits (97), Expect = 5e-06
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 9/50 (18%)

Query: 31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
          V  GE  G++G NG GKTT  K+L G + P   N         D  D + 
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN---------DEWDGIT 62

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 41.6 bits (98), Expect = 6e-06
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
            +S  +G+GE   ++G +G+GK+T   +L G   PTSG       S+ 
Sbjct: 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS 70

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 1  MLVTSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
           ++ S   V +H     Y    A++++S  + +GE   L+G NGAGKTT    L G  + 
Sbjct: 3  KVMLSFDKVSAH-----YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA 57

Query: 61 TSGN 64
          TSG 
Sbjct: 58 TSGR 61

Length = 237

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 41.6 bits (98), Expect = 8e-06
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 16  FPYDTKP---AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           F Y  +P   A++ ++  V  GE   L+G +GAGK+T F++L     P SG
Sbjct: 345 FAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG 395

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 40.9 bits (97), Expect = 1e-05
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 33  RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
            G+  G+LG NG GKTT  K+L+G + P  G+
Sbjct: 98  EGKVTGILGPNGIGKTTAVKILSGELIPNLGD 129

Length = 590

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 15 TFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
          TF YD  +P +  +SF +  G+   ++G +G+GK+T  ++L      +SG+  +    IR
Sbjct: 7  TFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR 66

Query: 74 D 74
          +
Sbjct: 67 E 67

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 76
          A+   SF V  G    L+G+NG+GK+T FK L G ++  SG   ++    R ++
Sbjct: 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQAL 75

Length = 272

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
            +     +SF +  GE   + G NG GKTT  ++L G ++P SG
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG 55

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          Y  KPA+  I+  +  GE   +LG +G GKTT   ++ G +    G
Sbjct: 11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56

Length = 255

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSG 63
          T  +D K  +  ISF +  GE  G+LG +GAGK+    +L G    +PTSG
Sbjct: 7  TKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 33  RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
            G+  G+LG NG GK+T  K+L G +KP  G 
Sbjct: 99  PGKVVGILGPNGIGKSTALKILAGELKPNLGR 130

Length = 591

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 19  DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
           D KPA++ ++  +  G+   L+G +GAGK+T   +L G + PT G   V    +RD
Sbjct: 332 DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRD 387

Length = 559

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          Y TK  ++ +S  + +G    ++G NGAGK+T   M++  +K  SG   +    +  
Sbjct: 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS 67

Length = 252

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           +SF +  GE   + G NG+GKTT  ++L G   P +G
Sbjct: 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG 55

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 15  TFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           TF Y  K  PA+  I+F +  G+   L+G +G+GK+T   +LT       G   +  H +
Sbjct: 348 TFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL 407

Query: 73  RD 74
           RD
Sbjct: 408 RD 409

Length = 582

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
          +    A++ I   V  GEC GL G NGAGK+T  K+L+G
Sbjct: 11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG 49

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
            PAV  +SF V  GE  G++G +G+GK+T    L G
Sbjct: 21 RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG 57

Length = 539

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 19/63 (30%), Positives = 29/63 (46%)

Query: 11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
          +H   F  + +P    + F V  GE   + G NGAGKTT  ++L G +   SG   +   
Sbjct: 14 AHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK 73

Query: 71 SIR 73
          +  
Sbjct: 74 TAT 76

Length = 214

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
          +N +S  +  GE   LLG +G GK+T  ++L G   P+ GN
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN 68

Length = 268

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 39.4 bits (93), Expect = 3e-05
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           +SF +  GE   + G NGAGKT+  ++L G  +P +G
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG 56

Length = 204

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 39.0 bits (92), Expect = 4e-05
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 13/71 (18%)

Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV-- 67
            +T   +  I+  V +GE   ++G  G+GK++    L G ++  SG+       AYV  
Sbjct: 14 EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQ 73

Query: 68 ----MNHSIRD 74
               N +IR+
Sbjct: 74 EPWIQNGTIRE 84

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 39.3 bits (92), Expect = 4e-05
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          ++ +S  +  G+   LLG NGAGK+T  +++ G + P  G
Sbjct: 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG 59

Length = 251

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 39.0 bits (91), Expect = 5e-05
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           F Y  D    ++ IS  +  GE  G++G +G+GK+T  K++     P +G   V  H +
Sbjct: 7  RFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL 66

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.3 bits (91), Expect = 5e-05
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 16 FPYDTKPAVNQ---ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          F Y+ +  VNQ   +SF + +GE   ++G NG+GK+TT +++ G  +   G
Sbjct: 12 FKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG 62

Length = 277

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          I F +  GE   LLG NGAGK+T  K++ G + P SG
Sbjct: 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66

Length = 510

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           +   TK A+  +S  +  G    LLG NGAGK+T    L G   P  G   VM   +
Sbjct: 13 RYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV 69

Length = 274

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 23  AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 61
           AV+ IS  + RG+  GL+G +G+GK+T    L   I   
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340

Length = 534

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 38.3 bits (89), Expect = 8e-05
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 41 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          G NG GK++  +M+ G ++P+SGN Y  N +I
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI 64

Length = 195

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 38.3 bits (89), Expect = 8e-05
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          G   GLLG NG+GK+T  ++L GA++P +G
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAG 56

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 38.2 bits (89), Expect = 8e-05
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          A++ ++  V  G    LLG +G+GK+T  +++ G  +P SG
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG 55

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 38.3 bits (89), Expect = 9e-05
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 16  FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
                 P +  I+  + +GE   + G  G+GKT+   ++ G ++P+ G    + HS R S
Sbjct: 45  LCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG---KIKHSGRIS 101

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 38.3 bits (90), Expect = 9e-05
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 15  TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
           T+P   +P +  +S  +  GE   LLG  G GK+T  ++LT A  P  G   +    I D
Sbjct: 347 TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD 406

Length = 574

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
           V   S  +  GE F ++GL+G+GK+T  ++L   I+PT G   +
Sbjct: 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI 87

Length = 400

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
           +SF +  GE   L G NG+GKTT  +++ G + P +G 
Sbjct: 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT 58

Length = 207

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
          Y        +SF +  GE  G++G +G+GK+T    L G + P  G A  +  S
Sbjct: 13 YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS 66

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 38 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
          G+LGLNGAGK+T  +++ G  K   G A   
Sbjct: 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPA 67

Length = 556

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 18  YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
            D K  V  ISF V RGE  G  GL G+G+T     L G  K   G   +
Sbjct: 274 RDRK-KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322

Length = 510

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 24  VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57
           V+ +SF + RGE  G+ GL GAG+T   + L GA
Sbjct: 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA 311

Length = 506

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 24  VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57
           V+ +SF + RGE  G+ GL GAG+T   + L GA
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA 309

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 15/39 (38%), Positives = 27/39 (69%)

Query: 18  YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 56
           Y+ +P ++ +S+ V  GE + ++G NGAGK+T   ++TG
Sbjct: 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308

Length = 490

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
          G+  GL+G NG GK+T  K+L G +KP  G 
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGK 56

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 19  DTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 50
           D    V  ISF +  GE  GL+G +G+GK+TT
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTT 328

Length = 529

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 16 FPYDTKPAVNQISFGVGRGECFGLL-GLNGAGKTTTFKMLTGAIKPTSG 63
          +       +N ISF +  GE F L+ G +G GK+T  K++   I PTSG
Sbjct: 15 YLAGDAKILNNISFSLRAGE-FKLITGPSGCGKSTLLKIVASLISPTSG 62

Length = 225

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 7  QTVDSHLE-TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65
              SHL  ++    + A+  +S  +  GE   +LG +G GKTT   ++ G + P+ G+ 
Sbjct: 3  MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62

Length = 259

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 22  PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
           P +  ISF + +G+   + G  G+GK++   M+ G ++P+ G    + HS R S
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGK---IKHSGRIS 490

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          F Y  +P +  ++         GL+G NG GK+T F  L+G ++P  G
Sbjct: 9  FRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKG 56

Length = 271

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-AYVM 68
          Y        +SF +  GE  G++G +G+GKTT  K ++G + P +G   Y M
Sbjct: 16 YGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRM 67

Length = 258

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          Y TK  +N +S  +  G+   L+G NG GK+T  K     + P SG
Sbjct: 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG 57

Length = 255

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTT 50
          T  AV  ISF +  GE   L+G +G+GK+ T
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVT 52

Length = 534

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          A+N +S  V  G+ +G++G +GAGK+T  + +    +PTSG+  V
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIV 64

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 8   TVDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-- 64
            V+    TF + ++   V  +SF    G+   ++G  GAGKTT   +L     PT G   
Sbjct: 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393

Query: 65  ------AYVMNHSIRDSMDLV 79
                   V   S+R S+  V
Sbjct: 394 IDGIDINTVTRESLRKSIATV 414

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 13/60 (21%)

Query: 19 DTKPAVNQISFGV-GR------------GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65
          DT  A+  +SF V GR            G+  GL+G NG+GK+T  KML     P+ G  
Sbjct: 9  DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68

Length = 265

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +SF +G GE   ++G +G+GK+T   +L G   PTSG
Sbjct: 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64

Length = 233

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          ++ ++  + +G    LLG +G GKTT  +++ G  KPT G  ++
Sbjct: 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFI 65

Length = 351

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 35.9 bits (83), Expect = 6e-04
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 15 TFPYDTKPAVN---QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
          TF Y T+P       +SF +  GE   L+G +G+GK+T   +L    +P  G   +    
Sbjct: 18 TFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKP 77

Query: 72 IRD 74
          I  
Sbjct: 78 ISQ 80

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 35.8 bits (83), Expect = 6e-04
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           +   V RGE   ++G +G+GK+T   +L G   P+SG   ++   +
Sbjct: 28 GVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPL 74

Length = 228

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 35.7 bits (83), Expect = 7e-04
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
          A++ +SF + RG+   ++G +G GK+T  ++LT    PT G  Y
Sbjct: 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELY 73

Length = 327

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
           V  ++  + RGE   L+G +G+GK+ T   + G + P
Sbjct: 1  LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPP 38

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 8   TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 54
            V+    T+P    PA+  ++F +  G+  G+ G  G+GK+T   ++
Sbjct: 315 DVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361

Length = 569

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 35.8 bits (82), Expect = 7e-04
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 16  FPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN-HS 71
           F YDT+  V     ++F +  G+ +  +G +G GK+T  K++     PT G+  + + H+
Sbjct: 390 FHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN 449

Query: 72  IRD 74
           ++D
Sbjct: 450 LKD 452

Length = 1466

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 12  HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
            L         AV  +SF V  GE  G+ G+ G G++   + ++G  KP SG   +    
Sbjct: 262 DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKD 321

Query: 72  IR 73
           + 
Sbjct: 322 VL 323

Length = 501

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 35.7 bits (83), Expect = 8e-04
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 38 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 68
          G+LGLNGAGK+T  +++ G  K  +G A   
Sbjct: 35 GVLGLNGAGKSTLLRIMAGVDKEFNGEARPA 65

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGN 64
            K  +  ++  V  GE   ++G NG+GK+T    + G    + T G 
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE 62

Length = 251

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 15 TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
          +F Y ++P V     +S  +  G+   L+G +G GK+T   +L     PTSG   +    
Sbjct: 7  SFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVD 66

Query: 72 IRD 74
          IRD
Sbjct: 67 IRD 69

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 35.5 bits (82), Expect = 9e-04
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          D  P +  +SF V  GE  G++G  GAGK+T    L   ++   G
Sbjct: 19 DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG 63

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
          PY+ + A++ ++    +G+ + ++G  G+GK+T  + +   +KPT+G 
Sbjct: 17 PYEHQ-AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGT 63

Length = 286

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 19  DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
              P ++ +S  +  GE   +LG +G+GK+T    L G + P  G 
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGE 391

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
           + Y+  P   +    V  GE   ++G +GAGK+T   ++ G I+P SG+  V
Sbjct: 7  RYEYEHLPM--EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 69
           GE   ++G  G+GKTT  + L   + P  G    ++
Sbjct: 1  PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65
           AV  +SF + RGE   ++G +G+GK+ T   L   ++   G  
Sbjct: 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV 73

Length = 623

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 15  TFPYDTKPAV-NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
           +F Y   P +   ++FG+       ++G NG GK+T  K+++G ++P+SG  +
Sbjct: 515 SFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF 567

Length = 718

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 16/48 (33%), Positives = 20/48 (41%)

Query: 27  ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
           IS  V  GE  GL G+ GAG+T   + L G      G   +    I  
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINA 329

Length = 510

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 22  PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
             ++ IS  +       ++G++G+GK+T  K+L G  +  SG   +   S++D
Sbjct: 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKD 540

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 15  TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
           TF Y  D    ++ +S  +  GE   ++G +G+GK+T  ++L G   P SG+ +
Sbjct: 458 TFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
          Y     ++ +S  +  GE   L+G +G GKTT  + + G +K 
Sbjct: 15 YGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA 57

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +F    +   + IS  V RG+   ++G +G GKTT  +++ G I P  G
Sbjct: 14 SFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG 62

Length = 269

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 34.1 bits (79), Expect = 0.002
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-YVMNH 70
          Y  +     +SF +  GE  G++G +G+GKTT    L+  + P +G   Y M  
Sbjct: 16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD 69

Length = 258

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          P + K A++ +S  + +GE   ++G  G+GKTT  + L   + P +G
Sbjct: 17 PTELK-ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62

Length = 305

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          ++  + +GE   L+G +G GK+T   +++G  +PTSG   +
Sbjct: 4  VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 34.0 bits (79), Expect = 0.003
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
          +  K  +  IS  V +GE   ++G +G+GK+T  + L G  +P SG+  V    + D  D
Sbjct: 12 FGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKD 71

Query: 78 L 78
          +
Sbjct: 72 I 72

Length = 240

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          + A+  ++F +  GE   L G +GAGK+T  K++ G  +P++G  +   H I
Sbjct: 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDI 66

Length = 222

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          N IS  +  G+   LLG +G+GKTT  +++ G    TSG
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG 57

Length = 353

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 33.8 bits (78), Expect = 0.003
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
           E  G+ G +GAGK+T  + + G  KP  G   +
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL 56

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          P + K  ++ ISF +  G    L+G  G+GK+T  +     +KP+SG   +  + I
Sbjct: 17 PMEKK-GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI 71

Length = 287

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRD 74
          ++  + +GE   L+G NG+GK+T  K + G    + T G        I D
Sbjct: 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.87
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.86
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.84
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.84
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.83
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.83
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.83
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.83
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.83
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.83
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.83
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.83
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.82
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.82
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.82
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.82
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.82
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.82
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.82
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.82
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.82
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.82
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.82
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.81
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.81
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.81
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.81
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.81
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.81
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.81
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.81
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.81
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.81
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.81
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.81
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.81
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.81
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.81
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.81
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.81
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.81
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.81
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.81
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.81
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.81
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.81
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.81
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.81
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.81
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.81
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.81
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.81
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.8
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.8
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.8
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.8
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.8
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.8
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.8
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.8
PRK10908	222	cell division protein FtsE; Provisional	99.8
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.8
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.8
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.8
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.8
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.8
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.8
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.8
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.8
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.8
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.8
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.8
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.8
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.8
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.8
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.8
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.8
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.8
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.79
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.79
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.79
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.79
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.79
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.79
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.79
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.79
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.79
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.79
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.79
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.79
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.79
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.79
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.79
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.79
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.78
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.78
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.78
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.78
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.78
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
cd03246	173	ABCC_Protease_Secretion This family represents the	99.78
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.78
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.78
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.78
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.78
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.78
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.78
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.78
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.78
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.78
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.78
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.78
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.78
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.78
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.78
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.78
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.78
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.78
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.77
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.77
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.77
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.77
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.77
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.77
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.77
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.77
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.77
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.77
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.77
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.77
COG4559	259	ABC-type hemin transport system, ATPase component	99.77
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.77
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.77
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.77
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.77
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.77
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.77
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.77
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.77
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.77
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.77
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.77
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.77
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.77
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.76
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.76
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.76
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.76
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.76
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.76
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.76
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.76
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.76
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK10938	490	putative molybdenum transport ATP-binding protein	99.76
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.76
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.76
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.76
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.76
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.76
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.76
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.76
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.76
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.76
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.76
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.76
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.76
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.76
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.76
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.75
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.75
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.75
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.75
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.75
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.75
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.75
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.75
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.75
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.75
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.75
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.75
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.75
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.74
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.74
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.74
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.74
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.74
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.74
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.74
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.74
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.74
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.74
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.74
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.74
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.74
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.74
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.74
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.74
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.74
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.74
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.74
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.74
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.74
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.74
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.74
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.74
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.74
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.74
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.74
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.73
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.73
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.73
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.73
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.73
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.73
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.73
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.73
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.73
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.73
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.73
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.73
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.73
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.73
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.73
PRK10938	490	putative molybdenum transport ATP-binding protein	99.73
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.73
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.72
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.72
PRK11147	635	ABC transporter ATPase component; Reviewed	99.72
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.72
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.72
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.72
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.72
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.72
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.72
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.72
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.72
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.72
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.72
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.71
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.71
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.71
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.71
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.71
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.71
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.71
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.71
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.71
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.71
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.71
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.71
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.71
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.71
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.7
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.7
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.7
PRK11147	635	ABC transporter ATPase component; Reviewed	99.7
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.7
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.7
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.7
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.69
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.69
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.69
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.69
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.69
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.69
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.69
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.69
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.69
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.69
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.69
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.69
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.69
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.68
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.68
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.68
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.68
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.68
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.68
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.68
KOG0058|consensus	716		99.68
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.67
KOG0057|consensus	591		99.67
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.67
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.67
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.66
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.66
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.66
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.66
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.65
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.65
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.65
COG4987	573	CydC ABC-type transport system involved in cytochr	99.65
COG4988	559	CydD ABC-type transport system involved in cytochr	99.65
PLN03232	1495	ABC transporter C family member; Provisional	99.64
PLN03130	1622	ABC transporter C family member; Provisional	99.64
PLN03211	659	ABC transporter G-25; Provisional	99.64
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.64
PLN03073	718	ABC transporter F family; Provisional	99.64
COG0488	530	Uup ATPase components of ABC transporters with dup	99.63
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.63
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.63
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.63
PTZ00243	1560	ABC transporter; Provisional	99.63
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.63
PLN03073	718	ABC transporter F family; Provisional	99.63
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.63
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.63
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.62
KOG0055|consensus	1228		99.62
COG1123	539	ATPase components of various ABC-type transport sy	99.62
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.6
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.6
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.59
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.59
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.59
PRK13409	590	putative ATPase RIL; Provisional	99.58
PRK13409	590	putative ATPase RIL; Provisional	99.57
COG4181	228	Predicted ABC-type transport system involved in ly	99.56
KOG0056|consensus	790		99.55
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.55
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.54
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.53
KOG0055|consensus	1228		99.53
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.52
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.52
COG0488	530	Uup ATPase components of ABC transporters with dup	99.52
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.52
COG1123	539	ATPase components of various ABC-type transport sy	99.5
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.49
KOG0059|consensus	885		99.48
KOG0054|consensus	1381		99.47
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.47
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.47
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.46
PLN03140	1470	ABC transporter G family member; Provisional	99.45
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.43
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.43
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.42
PLN03130	1622	ABC transporter C family member; Provisional	99.41
PLN03140	1470	ABC transporter G family member; Provisional	99.4
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.4
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.39
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.38
PTZ00243	1560	ABC transporter; Provisional	99.38
PLN03232	1495	ABC transporter C family member; Provisional	99.37
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.37
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.33
COG4172	534	ABC-type uncharacterized transport system, duplica	99.22
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.22
KOG2355|consensus	291		99.19
KOG0061|consensus	613		99.19
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.15
KOG0927|consensus	614		99.14
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.13
COG4172	534	ABC-type uncharacterized transport system, duplica	99.12
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.11
COG4178	604	ABC-type uncharacterized transport system, permeas	99.1
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.09
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.07
KOG0927|consensus	614		99.03
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.0
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	99.0
KOG0060|consensus	659		98.95
KOG0064|consensus	728		98.93
KOG0066|consensus	807		98.92
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.92
KOG0054|consensus	1381		98.92
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.89
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.89
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.88
KOG0062|consensus	582		98.88
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.87
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.82
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.81
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.81
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.81
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.79
PRK09862	506	putative ATP-dependent protease; Provisional	98.78
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.77
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.76
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.75
PRK08149	428	ATP synthase SpaL; Validated	98.73
PRK09099	441	type III secretion system ATPase; Provisional	98.73
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.72
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.72
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.71
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.7
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.67
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.66
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.66
PRK00300	205	gmk guanylate kinase; Provisional	98.64
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.64
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.63
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.61
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.61
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.6
PRK09825	176	idnK D-gluconate kinase; Provisional	98.59
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.59
KOG0065|consensus	1391		98.58
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.57
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.56
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.55
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.54
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.53
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.52
PRK05922	434	type III secretion system ATPase; Validated	98.52
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.52
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.52
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.5
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	98.5
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.49
PLN02796	347	D-glycerate 3-kinase	98.48
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.48
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.47
PRK06315	442	type III secretion system ATPase; Provisional	98.45
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.44
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	98.44
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.43
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.42
TIGR00767	415	rho transcription termination factor Rho. Members	98.39
PRK10416	318	signal recognition particle-docking protein FtsY;	98.39
PRK01889	356	GTPase RsgA; Reviewed	98.39
PRK04863	1486	mukB cell division protein MukB; Provisional	98.38
PRK06936	439	type III secretion system ATPase; Provisional	98.38
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.36
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.36
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.36
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.35
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.35
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.35
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.34
PRK06820	440	type III secretion system ATPase; Validated	98.32
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.3
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	98.3
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.29
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.28
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.27
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.26
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.26
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	98.25
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.23
PRK05480	209	uridine/cytidine kinase; Provisional	98.23
PRK03846	198	adenylylsulfate kinase; Provisional	98.22
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.22
KOG0066|consensus	807		98.21
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.19
PRK00098	298	GTPase RsgA; Reviewed	98.18
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.17
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.12
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.11
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.11
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.11
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.09
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.09
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.08
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.08
KOG0065|consensus	1391		98.08
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	98.07
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.06
PRK00889	175	adenylylsulfate kinase; Provisional	98.06
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.03
PLN02318	656	phosphoribulokinase/uridine kinase	98.03
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.02
PRK13851	344	type IV secretion system protein VirB11; Provision	98.01
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.01
PLN03046	460	D-glycerate 3-kinase; Provisional	98.01
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.01
PRK15494	339	era GTPase Era; Provisional	98.0
PRK05541	176	adenylylsulfate kinase; Provisional	98.0
PRK09183	259	transposase/IS protein; Provisional	97.99
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	97.99
PRK10246	1047	exonuclease subunit SbcC; Provisional	97.98
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.97
smart00382	148	AAA ATPases associated with a variety of cellular	97.97
KOG0063|consensus	592		97.97
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.96
PLN02165	334	adenylate isopentenyltransferase	97.96
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.96
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.94
cd01128	249	rho_factor Transcription termination factor rho is	97.94
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.93
COG3950	440	Predicted ATP-binding protein involved in virulenc	97.93
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.93

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.87  E-value=8.5e-24  Score=144.64  Aligned_cols=67  Identities=36%  Similarity=0.663  Sum_probs=63.2

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|+++++++++||++++|++++|+||||||||||+|+|+|+++|.+|+|+++|+++.+
T Consensus         2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~   68 (258)
T COG1120           2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS   68 (258)
T ss_pred             eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhh
Confidence            3567888999999999999999999999999999999999999999999999999999999998765

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.86  E-value=1.8e-22  Score=136.93  Aligned_cols=67  Identities=37%  Similarity=0.549  Sum_probs=63.0

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS   75 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~   75 (80)
                      ++.++++++|++-.+++++||++++||+++|||||||||||++++|+|+++|++|+|.++|+++...
T Consensus         5 L~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l   71 (250)
T COG0411           5 LEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL   71 (250)
T ss_pred             eeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCC
Confidence            4567889999999999999999999999999999999999999999999999999999999987653

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.84  E-value=1.9e-22  Score=142.91  Aligned_cols=67  Identities=31%  Similarity=0.527  Sum_probs=63.4

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++++++++.|++..+++|+||+|++||+++|+|||||||||+||+|+|+..|++|+|.++|+++..
T Consensus         5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~   71 (352)
T COG3842           5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD   71 (352)
T ss_pred             eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence            4677888999999999999999999999999999999999999999999999999999999998765

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=2.7e-22  Score=137.00  Aligned_cols=66  Identities=35%  Similarity=0.652  Sum_probs=60.8

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|++.++|+|+||++++|++++|+||||||||||+|++.|+++|.+|+|.+.+.++.
T Consensus         4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~   69 (254)
T COG1121           4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVR   69 (254)
T ss_pred             EEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccc
Confidence            467788899998668999999999999999999999999999999999999999999999987654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.83  E-value=4.8e-22  Score=135.08  Aligned_cols=64  Identities=25%  Similarity=0.497  Sum_probs=60.2

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ++++++++.|+...+|+++||+|++||+++|+|||||||||||++++|+.+|++|+|.++|+++
T Consensus         4 l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v   67 (248)
T COG1116           4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV   67 (248)
T ss_pred             EEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence            4566778889989999999999999999999999999999999999999999999999999876

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.83  E-value=4.7e-22  Score=133.50  Aligned_cols=66  Identities=26%  Similarity=0.450  Sum_probs=61.9

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++.++|++..+|+++|++|++||+++|+||||||||||+|||++|.+|++|+|.++|+++.
T Consensus         2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~   67 (240)
T COG1126           2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVG   67 (240)
T ss_pred             eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEecc
Confidence            356788899999999999999999999999999999999999999999999999999999997654

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.83  E-value=5.5e-22  Score=139.94  Aligned_cols=67  Identities=24%  Similarity=0.464  Sum_probs=62.1

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++++++++.|++..+++++||+|++||+++|+||||||||||||+|+|+.+|++|+|+++|+++.+
T Consensus         3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~   69 (338)
T COG3839           3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD   69 (338)
T ss_pred             EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence            4567788999988669999999999999999999999999999999999999999999999998765

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.83  E-value=6.4e-22  Score=131.97  Aligned_cols=64  Identities=23%  Similarity=0.529  Sum_probs=59.1

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|+++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   65 (235)
T cd03261           2 ELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIS   65 (235)
T ss_pred             eEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            4567788888888999999999999999999999999999999999999999999999997754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.83  E-value=6.8e-22  Score=130.09  Aligned_cols=64  Identities=28%  Similarity=0.506  Sum_probs=59.1

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   65 (213)
T cd03259           2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT   65 (213)
T ss_pred             eeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcC
Confidence            4567788888888999999999999999999999999999999999999999999999998764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.83  E-value=1.5e-21  Score=133.42  Aligned_cols=67  Identities=43%  Similarity=0.647  Sum_probs=63.2

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+++++++++|+++.+++++||++++|+++|++|+|||||||++|+|.|+++|++|+|.|+|.++..
T Consensus         2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~   68 (300)
T COG4152           2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ   68 (300)
T ss_pred             ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh
Confidence            4577888999999999999999999999999999999999999999999999999999999988654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.83  E-value=7.2e-22  Score=130.21  Aligned_cols=64  Identities=28%  Similarity=0.473  Sum_probs=58.3

Q ss_pred             ccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|++    +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   69 (218)
T cd03255           2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIS   69 (218)
T ss_pred             eEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehh
Confidence            45677788865    68999999999999999999999999999999999999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.83  E-value=1.2e-21  Score=134.53  Aligned_cols=66  Identities=35%  Similarity=0.572  Sum_probs=63.0

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++..++++.|+++.+++++||+|++||+++++|||||||||++|+|+++++|++|+|+++|+++.+
T Consensus         2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~   67 (309)
T COG1125           2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD   67 (309)
T ss_pred             ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeeccc
Confidence            567788999999999999999999999999999999999999999999999999999999999875

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.82  E-value=1.4e-21  Score=128.95  Aligned_cols=64  Identities=33%  Similarity=0.448  Sum_probs=59.1

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   65 (222)
T cd03224           2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT   65 (222)
T ss_pred             EEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence            4567788888888999999999999999999999999999999999999999999999997653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.82  E-value=1.4e-21  Score=128.96  Aligned_cols=64  Identities=58%  Similarity=0.854  Sum_probs=58.5

Q ss_pred             ccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|++  +++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.
T Consensus         2 ~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (220)
T cd03263           2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR   67 (220)
T ss_pred             EEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence            45677788876  78999999999999999999999999999999999999999999999998764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.82  E-value=9.6e-22  Score=136.17  Aligned_cols=67  Identities=45%  Similarity=0.689  Sum_probs=62.2

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|+ ++.+|+++||+|++|+++||+||||||||||+++|+|+.+|++|+|.++|++...
T Consensus         4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~   71 (293)
T COG1131           4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK   71 (293)
T ss_pred             eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCcc
Confidence            456688899999 6999999999999999999999999999999999999999999999999987654

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.82  E-value=8.2e-22  Score=136.89  Aligned_cols=67  Identities=43%  Similarity=0.701  Sum_probs=62.6

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+++.++++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|.++..
T Consensus         7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~   73 (306)
T PRK13537          7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS   73 (306)
T ss_pred             eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEeccc
Confidence            5778888999988899999999999999999999999999999999999999999999999987653

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.82  E-value=1.8e-21  Score=130.10  Aligned_cols=72  Identities=36%  Similarity=0.499  Sum_probs=65.7

Q ss_pred             hccccccCCCCCcc-ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccccccccC
Q psy7220           9 VDSHLETFPYDTKP-AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR   80 (80)
Q Consensus         9 ~~~~~~~~~~~~~~-vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~~~~~~   80 (80)
                      +++..++++|+... +++|+||++++|+++||+|+|||||||+||+|++++.|++|.|+++|.+..+..+++|
T Consensus         2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vr   74 (245)
T COG4555           2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR   74 (245)
T ss_pred             eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHh
Confidence            46677889998866 9999999999999999999999999999999999999999999999999887776654

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.82  E-value=1e-21  Score=138.38  Aligned_cols=66  Identities=41%  Similarity=0.687  Sum_probs=62.3

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus        41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~  106 (340)
T PRK13536         41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP  106 (340)
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECC
Confidence            477888899999989999999999999999999999999999999999999999999999998764

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.82  E-value=1.8e-21  Score=128.07  Aligned_cols=62  Identities=37%  Similarity=0.630  Sum_probs=57.4

Q ss_pred             cccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        11 ~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ++++++.|+++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus         2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   63 (213)
T cd03235           2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL   63 (213)
T ss_pred             cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccH
Confidence            45677888778899999999999999999999999999999999999999999999999765

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.82  E-value=1.6e-21  Score=128.08  Aligned_cols=64  Identities=42%  Similarity=0.656  Sum_probs=58.7

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (210)
T cd03269           2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD   65 (210)
T ss_pred             EEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh
Confidence            4567777887788999999999999999999999999999999999999999999999998753

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.82  E-value=1.5e-21  Score=129.12  Aligned_cols=64  Identities=53%  Similarity=0.699  Sum_probs=58.9

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   65 (220)
T cd03265           2 EVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV   65 (220)
T ss_pred             EEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecC
Confidence            4667788888888999999999999999999999999999999999999999999999987653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.82  E-value=1.7e-21  Score=128.12  Aligned_cols=64  Identities=31%  Similarity=0.549  Sum_probs=59.1

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~   65 (213)
T cd03301           2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVT   65 (213)
T ss_pred             EEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            4567788888888999999999999999999999999999999999999999999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.82  E-value=1.7e-21  Score=129.46  Aligned_cols=64  Identities=42%  Similarity=0.644  Sum_probs=59.2

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|+++.+++++||++++|++++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   65 (232)
T cd03218           2 RAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT   65 (232)
T ss_pred             eEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence            4567788888888999999999999999999999999999999999999999999999997653

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.81  E-value=1.9e-21  Score=129.21  Aligned_cols=64  Identities=30%  Similarity=0.400  Sum_probs=59.2

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (230)
T TIGR03410         2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT   65 (230)
T ss_pred             EEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence            4567788888888999999999999999999999999999999999999999999999987754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.81  E-value=1.9e-21  Score=129.53  Aligned_cols=64  Identities=38%  Similarity=0.599  Sum_probs=58.7

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++++++++||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   65 (236)
T cd03219           2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT   65 (236)
T ss_pred             eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECC
Confidence            4567778888778999999999999999999999999999999999999999999999998764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.81  E-value=2.2e-21  Score=127.22  Aligned_cols=62  Identities=35%  Similarity=0.527  Sum_probs=57.2

Q ss_pred             cccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          11 SHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        11 ~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ++++++.|++ +++++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   64 (205)
T cd03226           2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI   64 (205)
T ss_pred             cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh
Confidence            4566777877 7899999999999999999999999999999999999999999999999775

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.81  E-value=2e-21  Score=127.77  Aligned_cols=65  Identities=31%  Similarity=0.540  Sum_probs=58.6

Q ss_pred             hccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.| +++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   67 (214)
T TIGR02673         2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN   67 (214)
T ss_pred             EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence            4556777777 4678999999999999999999999999999999999999999999999998764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.81  E-value=1.8e-21  Score=130.24  Aligned_cols=65  Identities=25%  Similarity=0.447  Sum_probs=59.4

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||++++|++++|+||||||||||+++|+|+.+|++|+|+++|.++.
T Consensus         3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (239)
T cd03296           3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT   67 (239)
T ss_pred             EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            45667788888888999999999999999999999999999999999999999999999997754

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.81  E-value=1.7e-20  Score=125.33  Aligned_cols=66  Identities=39%  Similarity=0.632  Sum_probs=62.4

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +...++.+.|+.+++++++||++++||++|++|||||||||.|.++.|+.+|++|.|.++++++..
T Consensus         5 L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~   70 (243)
T COG1137           5 LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITK   70 (243)
T ss_pred             EEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCccccc
Confidence            456788999999999999999999999999999999999999999999999999999999998764

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.81  E-value=2.3e-21  Score=126.90  Aligned_cols=65  Identities=37%  Similarity=0.603  Sum_probs=59.8

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~   66 (200)
T PRK13540          2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK   66 (200)
T ss_pred             EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccc
Confidence            45667788888888999999999999999999999999999999999999999999999998764

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.81  E-value=2.5e-21  Score=129.14  Aligned_cols=64  Identities=31%  Similarity=0.560  Sum_probs=58.8

Q ss_pred             ccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++.
T Consensus         2 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   66 (241)
T cd03256           2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDIN   66 (241)
T ss_pred             EEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEecc
Confidence            45677888876 78999999999999999999999999999999999999999999999998764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.81  E-value=2e-21  Score=127.62  Aligned_cols=64  Identities=19%  Similarity=0.314  Sum_probs=58.9

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +.+++++.|+++++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (213)
T cd03262           2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT   65 (213)
T ss_pred             EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence            4567788888788999999999999999999999999999999999999999999999998763

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.81  E-value=2.5e-21  Score=128.08  Aligned_cols=65  Identities=29%  Similarity=0.561  Sum_probs=58.4

Q ss_pred             hccccccCCCCCc----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTK----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++    ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   70 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLL   70 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence            3456777777654    7999999999999999999999999999999999999999999999998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.81  E-value=2.3e-21  Score=123.98  Aligned_cols=65  Identities=37%  Similarity=0.510  Sum_probs=59.7

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +.+++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++..
T Consensus         2 ~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~   66 (163)
T cd03216           2 ELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF   66 (163)
T ss_pred             EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc
Confidence            45677888888889999999999999999999999999999999999999999999999987653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.81  E-value=2.8e-21  Score=126.85  Aligned_cols=63  Identities=33%  Similarity=0.633  Sum_probs=57.4

Q ss_pred             cccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          11 SHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        11 ~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +.++++.|++  +.+++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   66 (211)
T cd03225           2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLT   66 (211)
T ss_pred             ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcc
Confidence            4566777876  78999999999999999999999999999999999999999999999997654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.81  E-value=2.7e-21  Score=128.73  Aligned_cols=65  Identities=29%  Similarity=0.562  Sum_probs=59.3

Q ss_pred             hccccccCCCCCc----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTK----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++    ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   70 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLT   70 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence            4566778888766    8999999999999999999999999999999999999999999999998764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.81  E-value=2.4e-21  Score=128.18  Aligned_cols=64  Identities=30%  Similarity=0.519  Sum_probs=58.1

Q ss_pred             ccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|++    +++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   69 (220)
T cd03293           2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT   69 (220)
T ss_pred             eEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence            45677778876    68999999999999999999999999999999999999999999999997653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.81  E-value=2.7e-21  Score=129.21  Aligned_cols=65  Identities=25%  Similarity=0.477  Sum_probs=59.2

Q ss_pred             hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+ ++++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (243)
T TIGR02315         2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDIT   67 (243)
T ss_pred             eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhh
Confidence            35667788887 778999999999999999999999999999999999999999999999997764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=2.8e-21  Score=131.05  Aligned_cols=65  Identities=25%  Similarity=0.418  Sum_probs=59.4

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   66 (255)
T PRK11248          2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVE   66 (255)
T ss_pred             EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            45667788888788999999999999999999999999999999999999999999999997764

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.81  E-value=2.4e-21  Score=127.70  Aligned_cols=65  Identities=29%  Similarity=0.518  Sum_probs=58.1

Q ss_pred             hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|++  +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   68 (216)
T TIGR00960         2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLT   68 (216)
T ss_pred             eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehh
Confidence            456677777754  46999999999999999999999999999999999999999999999998764

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.81  E-value=3.2e-21  Score=128.32  Aligned_cols=66  Identities=27%  Similarity=0.387  Sum_probs=60.7

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   72 (225)
T PRK10247          7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIS   72 (225)
T ss_pred             eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcC
Confidence            366778888888888999999999999999999999999999999999999999999999987653

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.81  E-value=3e-21  Score=126.66  Aligned_cols=64  Identities=42%  Similarity=0.631  Sum_probs=59.1

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++++++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   65 (208)
T cd03268           2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ   65 (208)
T ss_pred             EEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCccc
Confidence            4567788887788999999999999999999999999999999999999999999999998764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.81  E-value=2.8e-21  Score=124.72  Aligned_cols=64  Identities=27%  Similarity=0.498  Sum_probs=58.6

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 ~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (178)
T cd03229           2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT   65 (178)
T ss_pred             EEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            4567777887788999999999999999999999999999999999999999999999997764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.81  E-value=2.6e-21  Score=129.24  Aligned_cols=65  Identities=37%  Similarity=0.596  Sum_probs=59.4

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~   66 (236)
T TIGR03864         2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR   66 (236)
T ss_pred             EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcc
Confidence            45667788888888999999999999999999999999999999999999999999999997764

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.81  E-value=2.9e-21  Score=126.15  Aligned_cols=64  Identities=25%  Similarity=0.429  Sum_probs=58.9

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (198)
T TIGR01189         2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALA   65 (198)
T ss_pred             EEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc
Confidence            4567788888889999999999999999999999999999999999999999999999997753

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.81  E-value=3.7e-21  Score=126.84  Aligned_cols=65  Identities=42%  Similarity=0.597  Sum_probs=58.9

Q ss_pred             hccccccCCCCCc----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTK----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++..++++.|+++    ++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   70 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV   70 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcc
Confidence            3556778888765    7999999999999999999999999999999999999999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.81  E-value=3.9e-21  Score=129.95  Aligned_cols=64  Identities=25%  Similarity=0.422  Sum_probs=60.2

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      .+++.++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|++
T Consensus         6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   69 (258)
T PRK11701          6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD   69 (258)
T ss_pred             eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence            4777888888888889999999999999999999999999999999999999999999999987

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.81  E-value=3e-21  Score=128.07  Aligned_cols=64  Identities=27%  Similarity=0.438  Sum_probs=59.2

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee-----ecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-----KPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~-----~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.     +|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~   70 (227)
T cd03260           2 ELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY   70 (227)
T ss_pred             EEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhh
Confidence            4667788888888999999999999999999999999999999999999     999999999998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.81  E-value=2.2e-21  Score=134.20  Aligned_cols=65  Identities=45%  Similarity=0.746  Sum_probs=60.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         5 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   69 (303)
T TIGR01288         5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP   69 (303)
T ss_pred             EEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence            56677888888888999999999999999999999999999999999999999999999997753

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.81  E-value=2.9e-21  Score=126.26  Aligned_cols=61  Identities=18%  Similarity=0.388  Sum_probs=56.8

Q ss_pred             ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus         2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   62 (206)
T TIGR03608         2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKET   62 (206)
T ss_pred             cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence            4567778878899999999999999999999999999999999999999999999999874

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.81  E-value=3.1e-21  Score=126.62  Aligned_cols=65  Identities=28%  Similarity=0.478  Sum_probs=59.4

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~   66 (204)
T PRK13538          2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIR   66 (204)
T ss_pred             eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence            45667788888888999999999999999999999999999999999999999999999997754

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.81  E-value=4.4e-21  Score=130.69  Aligned_cols=64  Identities=25%  Similarity=0.497  Sum_probs=59.5

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +++.++++.|+++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus         2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   65 (271)
T PRK13638          2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL   65 (271)
T ss_pred             eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEc
Confidence            4566778888888899999999999999999999999999999999999999999999999876

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.80  E-value=4.8e-21  Score=129.16  Aligned_cols=68  Identities=34%  Similarity=0.490  Sum_probs=63.5

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS   75 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~   75 (80)
                      .+++.+++..|+...+|+++||++++||+++|+|+||+|||||+++|+|+.++.+|+|.|+|+++...
T Consensus         3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~   70 (237)
T COG0410           3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL   70 (237)
T ss_pred             ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC
Confidence            35677888999999999999999999999999999999999999999999999999999999998754

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=5.1e-21  Score=127.79  Aligned_cols=66  Identities=30%  Similarity=0.437  Sum_probs=60.8

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   70 (237)
T PRK11614          5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDIT   70 (237)
T ss_pred             EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecC
Confidence            466778888888888999999999999999999999999999999999999999999999998754

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.80  E-value=4.6e-21  Score=130.59  Aligned_cols=66  Identities=29%  Similarity=0.470  Sum_probs=60.4

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   72 (269)
T PRK11831          7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIP   72 (269)
T ss_pred             eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcc
Confidence            356677788888888999999999999999999999999999999999999999999999997754

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.80  E-value=5.3e-21  Score=129.94  Aligned_cols=68  Identities=22%  Similarity=0.487  Sum_probs=64.6

Q ss_pred             hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .-++++.+++.|+++.+++++||+|++||+++|+|+||+|||||+|++.|+++|++|+|.++|+++..
T Consensus         7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~   74 (263)
T COG1127           7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ   74 (263)
T ss_pred             ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhc
Confidence            46788899999999999999999999999999999999999999999999999999999999998764

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=4.8e-21  Score=128.16  Aligned_cols=65  Identities=37%  Similarity=0.580  Sum_probs=59.4

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         4 l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   68 (241)
T PRK10895          4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS   68 (241)
T ss_pred             EEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            55667778888788999999999999999999999999999999999999999999999997653

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=6.5e-21  Score=129.22  Aligned_cols=67  Identities=25%  Similarity=0.495  Sum_probs=61.2

Q ss_pred             hhccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++++++++.| +++++|++|||+|++||+++|+|+||||||||||+|+|+.+|++|+|.++|.++..
T Consensus         3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~   70 (258)
T COG3638           3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITK   70 (258)
T ss_pred             eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhc
Confidence            35667778888 88999999999999999999999999999999999999999999999999977653

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=4.7e-21  Score=127.80  Aligned_cols=65  Identities=26%  Similarity=0.522  Sum_probs=58.6

Q ss_pred             hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|++    .++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~   74 (233)
T PRK11629          6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMS   74 (233)
T ss_pred             EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence            566777777754    47999999999999999999999999999999999999999999999998764

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.80  E-value=4.2e-21  Score=125.91  Aligned_cols=64  Identities=27%  Similarity=0.460  Sum_probs=59.0

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (201)
T cd03231           2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLD   65 (201)
T ss_pred             EEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence            4567788888888999999999999999999999999999999999999999999999987753

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.80  E-value=4.6e-21  Score=126.94  Aligned_cols=65  Identities=28%  Similarity=0.494  Sum_probs=58.5

Q ss_pred             hccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.| +++.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   67 (222)
T PRK10908          2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDIT   67 (222)
T ss_pred             EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            3456677777 5678999999999999999999999999999999999999999999999998764

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.80  E-value=5.1e-21  Score=125.74  Aligned_cols=64  Identities=30%  Similarity=0.405  Sum_probs=57.8

Q ss_pred             ccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|++ +++++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   66 (214)
T cd03292           2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS   66 (214)
T ss_pred             EEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence            45677778854 68999999999999999999999999999999999999999999999998764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.80  E-value=4.7e-21  Score=128.58  Aligned_cols=65  Identities=25%  Similarity=0.429  Sum_probs=58.9

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   68 (241)
T PRK14250          4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIK   68 (241)
T ss_pred             EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence            44556677787788999999999999999999999999999999999999999999999998764

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.80  E-value=4.6e-21  Score=128.18  Aligned_cols=65  Identities=18%  Similarity=0.356  Sum_probs=59.4

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   66 (240)
T PRK09493          2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN   66 (240)
T ss_pred             EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            35667778887788999999999999999999999999999999999999999999999998764

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.80  E-value=6e-21  Score=128.46  Aligned_cols=66  Identities=35%  Similarity=0.477  Sum_probs=60.9

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   70 (255)
T PRK11300          5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE   70 (255)
T ss_pred             eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECC
Confidence            366778888888889999999999999999999999999999999999999999999999998764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.80  E-value=5.2e-21  Score=126.97  Aligned_cols=66  Identities=24%  Similarity=0.406  Sum_probs=58.8

Q ss_pred             hhccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|++    .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~   75 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLH   75 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcc
Confidence            3567777887864    35999999999999999999999999999999999999999999999997764

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.80  E-value=5.1e-21  Score=132.39  Aligned_cols=66  Identities=36%  Similarity=0.599  Sum_probs=60.8

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.++++.|+++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~   68 (301)
T TIGR03522         3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ   68 (301)
T ss_pred             EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence            566777888888899999999999999999999999999999999999999999999999987643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.80  E-value=6.6e-21  Score=127.42  Aligned_cols=65  Identities=29%  Similarity=0.427  Sum_probs=59.7

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         3 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   67 (242)
T TIGR03411         3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLT   67 (242)
T ss_pred             EEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecC
Confidence            45677788888788999999999999999999999999999999999999999999999998764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.80  E-value=7.1e-21  Score=127.55  Aligned_cols=64  Identities=39%  Similarity=0.622  Sum_probs=58.6

Q ss_pred             ccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|++ +.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   66 (242)
T cd03295           2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIR   66 (242)
T ss_pred             EEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcC
Confidence            45677788877 78999999999999999999999999999999999999999999999998754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.80  E-value=6.2e-21  Score=125.97  Aligned_cols=64  Identities=27%  Similarity=0.492  Sum_probs=57.4

Q ss_pred             ccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|++    +++++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         3 ~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   70 (221)
T TIGR02211         3 KCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLS   70 (221)
T ss_pred             EEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence            45667777754    47999999999999999999999999999999999999999999999998764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.80  E-value=6e-21  Score=125.63  Aligned_cols=64  Identities=25%  Similarity=0.427  Sum_probs=58.5

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ++++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++
T Consensus         3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   66 (207)
T PRK13539          3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI   66 (207)
T ss_pred             EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeC
Confidence            4566677888778899999999999999999999999999999999999999999999998764

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.80  E-value=7.7e-21  Score=128.36  Aligned_cols=65  Identities=25%  Similarity=0.467  Sum_probs=60.2

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   66 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH   66 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcc
Confidence            45677888888889999999999999999999999999999999999999999999999997754

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.80  E-value=8.1e-21  Score=121.90  Aligned_cols=64  Identities=28%  Similarity=0.540  Sum_probs=58.0

Q ss_pred             ccccccCCCCCc--cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~--~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++  .+++++||++++|++++|+||||||||||+++|+|+.+|++|+++++|+++.
T Consensus         2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~   67 (171)
T cd03228           2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR   67 (171)
T ss_pred             EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh
Confidence            456677777765  7999999999999999999999999999999999999999999999997764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.80  E-value=7.4e-21  Score=122.30  Aligned_cols=64  Identities=42%  Similarity=0.691  Sum_probs=58.0

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +.+++++.|++.++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   65 (173)
T cd03230           2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK   65 (173)
T ss_pred             EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence            4566677777778999999999999999999999999999999999999999999999998764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.80  E-value=6.5e-21  Score=127.24  Aligned_cols=64  Identities=23%  Similarity=0.362  Sum_probs=58.2

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.  +|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~   67 (243)
T TIGR01978         2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL   67 (243)
T ss_pred             eEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence            4567788888888999999999999999999999999999999999995  789999999997653

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.80  E-value=7.5e-21  Score=128.06  Aligned_cols=64  Identities=22%  Similarity=0.319  Sum_probs=59.1

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|+++++++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   65 (252)
T TIGR03005         2 RFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY   65 (252)
T ss_pred             EEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            4667788888788999999999999999999999999999999999999999999999998763

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.80  E-value=9.4e-21  Score=126.20  Aligned_cols=64  Identities=34%  Similarity=0.453  Sum_probs=60.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +.++++++.|+++++++++||+|++|++++|+|+||||||||+++|+|+.+|++|+|+++|+++
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   86 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS   86 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence            6677888899999999999999999999999999999999999999999999999999998764

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.80  E-value=8.2e-21  Score=122.73  Aligned_cols=63  Identities=32%  Similarity=0.586  Sum_probs=57.7

Q ss_pred             cccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        11 ~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..++++.|+++.+++++||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~   64 (180)
T cd03214           2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA   64 (180)
T ss_pred             eeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            456677787778999999999999999999999999999999999999999999999998764

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.79  E-value=8e-21  Score=128.75  Aligned_cols=65  Identities=25%  Similarity=0.502  Sum_probs=59.6

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++.+++++||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~   67 (258)
T PRK13548          3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLA   67 (258)
T ss_pred             EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcc
Confidence            45677788888888999999999999999999999999999999999999999999999997653

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=8.2e-21  Score=128.99  Aligned_cols=66  Identities=26%  Similarity=0.425  Sum_probs=60.7

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus        11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   76 (265)
T PRK10575         11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE   76 (265)
T ss_pred             eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehh
Confidence            367778888888888999999999999999999999999999999999999999999999997653

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.79  E-value=7.1e-21  Score=127.78  Aligned_cols=65  Identities=22%  Similarity=0.371  Sum_probs=59.5

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus         4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   68 (250)
T PRK11264          4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITID   68 (250)
T ss_pred             EEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc
Confidence            55677788888788999999999999999999999999999999999999999999999987764

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.79  E-value=1.1e-20  Score=124.95  Aligned_cols=66  Identities=29%  Similarity=0.488  Sum_probs=61.0

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus        11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~   76 (214)
T PRK13543         11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT   76 (214)
T ss_pred             eEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEcc
Confidence            367788888888888999999999999999999999999999999999999999999999997654

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=9.1e-21  Score=126.89  Aligned_cols=64  Identities=25%  Similarity=0.378  Sum_probs=58.9

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ++..++++.|+++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus         3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   66 (242)
T PRK11124          3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF   66 (242)
T ss_pred             EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence            4556677888888899999999999999999999999999999999999999999999999865

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=9.5e-21  Score=127.87  Aligned_cols=65  Identities=29%  Similarity=0.508  Sum_probs=59.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++++|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus         3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (255)
T PRK11231          3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS   67 (255)
T ss_pred             EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhH
Confidence            45666778888888999999999999999999999999999999999999999999999997653

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.79  E-value=9.8e-21  Score=136.06  Aligned_cols=66  Identities=27%  Similarity=0.554  Sum_probs=60.8

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++.+++++.|+++++|+++||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.+
T Consensus         4 L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~   69 (402)
T PRK09536          4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA   69 (402)
T ss_pred             EEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCc
Confidence            556777888888999999999999999999999999999999999999999999999999987653

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.79  E-value=9.8e-21  Score=128.84  Aligned_cols=66  Identities=20%  Similarity=0.418  Sum_probs=61.3

Q ss_pred             hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ..+++.++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++.++
T Consensus        11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~   76 (257)
T PRK11247         11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL   76 (257)
T ss_pred             CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH
Confidence            467788889999888899999999999999999999999999999999999999999999988654

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.79  E-value=1.1e-20  Score=132.92  Aligned_cols=65  Identities=29%  Similarity=0.484  Sum_probs=58.7

Q ss_pred             hccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+    .+++++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~   70 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT   70 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            45667777776    467999999999999999999999999999999999999999999999998764

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1e-20  Score=128.49  Aligned_cols=67  Identities=19%  Similarity=0.427  Sum_probs=61.5

Q ss_pred             hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..+++.++++.|+++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   72 (265)
T PRK10253          6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ   72 (265)
T ss_pred             cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhh
Confidence            4566778888888888999999999999999999999999999999999999999999999998753

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.79  E-value=1.5e-20  Score=121.24  Aligned_cols=64  Identities=28%  Similarity=0.545  Sum_probs=57.1

Q ss_pred             ccccccCCCCCc--cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~--~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +.+++++.|.++  ++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   67 (178)
T cd03247           2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS   67 (178)
T ss_pred             EEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHH
Confidence            455667777654  7999999999999999999999999999999999999999999999997653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.79  E-value=1.1e-20  Score=124.15  Aligned_cols=63  Identities=35%  Similarity=0.550  Sum_probs=57.9

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++++++++||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 ~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   64 (211)
T cd03264           2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL   64 (211)
T ss_pred             EEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccc
Confidence            4567788888788999999999999 99999999999999999999999999999999998764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.79  E-value=1.1e-20  Score=126.94  Aligned_cols=65  Identities=20%  Similarity=0.346  Sum_probs=59.4

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-----CCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-----~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+|+     +|+|.++|+++.
T Consensus         2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~   71 (247)
T TIGR00972         2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY   71 (247)
T ss_pred             EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcc
Confidence            45667788888888999999999999999999999999999999999999988     999999998764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.79  E-value=1.1e-20  Score=133.79  Aligned_cols=66  Identities=29%  Similarity=0.436  Sum_probs=61.4

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|++..+|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~   69 (353)
T TIGR03265         4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT   69 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECC
Confidence            467778888898888999999999999999999999999999999999999999999999998764

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.79  E-value=1.5e-20  Score=126.54  Aligned_cols=63  Identities=27%  Similarity=0.463  Sum_probs=58.6

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      +++.++++.|+++.+++++||+|++|++++|+|+||||||||+++|+|+.+|++|+|+++|.+
T Consensus         4 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~   66 (253)
T TIGR02323         4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRS   66 (253)
T ss_pred             EEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccc
Confidence            566777888887889999999999999999999999999999999999999999999999875

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.79  E-value=1.6e-20  Score=123.96  Aligned_cols=65  Identities=34%  Similarity=0.616  Sum_probs=58.8

Q ss_pred             hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|++  +.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   69 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR   69 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhH
Confidence            566777888865  57999999999999999999999999999999999999999999999997653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=1.8e-20  Score=128.06  Aligned_cols=65  Identities=23%  Similarity=0.462  Sum_probs=57.7

Q ss_pred             hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|++     +++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~   72 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLIT   72 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            445666777754     46999999999999999999999999999999999999999999999998764

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.78  E-value=1.8e-20  Score=124.72  Aligned_cols=64  Identities=28%  Similarity=0.503  Sum_probs=57.7

Q ss_pred             ccccccCCCCCc--cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~--~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+++  ++++++||++++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         2 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   67 (234)
T cd03251           2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR   67 (234)
T ss_pred             EEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhh
Confidence            456677777664  7999999999999999999999999999999999999999999999997654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=1.3e-20  Score=133.29  Aligned_cols=66  Identities=24%  Similarity=0.470  Sum_probs=61.2

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|++..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~   71 (351)
T PRK11432          6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT   71 (351)
T ss_pred             EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC
Confidence            466777888888888999999999999999999999999999999999999999999999998764

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.78  E-value=2e-20  Score=129.40  Aligned_cols=57  Identities=49%  Similarity=0.739  Sum_probs=53.5

Q ss_pred             CCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        17 ~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   58 (302)
T TIGR01188         2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVV   58 (302)
T ss_pred             eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            467778999999999999999999999999999999999999999999999998764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.78  E-value=1.7e-20  Score=124.46  Aligned_cols=66  Identities=32%  Similarity=0.581  Sum_probs=59.5

Q ss_pred             hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|++ +.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|+++|.++.
T Consensus         2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   68 (229)
T cd03254           2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR   68 (229)
T ss_pred             eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHH
Confidence            3567778888864 57999999999999999999999999999999999999999999999997764

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.78  E-value=1.9e-20  Score=127.69  Aligned_cols=64  Identities=30%  Similarity=0.476  Sum_probs=59.2

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ...++++.|+++++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~   89 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA   89 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcc
Confidence            4557788889899999999999999999999999999999999999999999999999998764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=1.9e-20  Score=128.81  Aligned_cols=66  Identities=33%  Similarity=0.546  Sum_probs=58.8

Q ss_pred             hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++.+++++.|++     +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~   73 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD   73 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCC
Confidence            456677777754     479999999999999999999999999999999999999999999999987643

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=1.8e-20  Score=128.15  Aligned_cols=65  Identities=31%  Similarity=0.487  Sum_probs=59.1

Q ss_pred             hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+ ..++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         5 l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   70 (274)
T PRK13647          5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVN   70 (274)
T ss_pred             EEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECC
Confidence            56677788885 467999999999999999999999999999999999999999999999998764

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.78  E-value=2.3e-20  Score=120.01  Aligned_cols=64  Identities=28%  Similarity=0.596  Sum_probs=57.4

Q ss_pred             ccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +..++++.|++  .++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 ~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   67 (173)
T cd03246           2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS   67 (173)
T ss_pred             EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc
Confidence            45667777764  56999999999999999999999999999999999999999999999997764

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.1e-20  Score=127.81  Aligned_cols=65  Identities=28%  Similarity=0.546  Sum_probs=58.5

Q ss_pred             hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+ ++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   67 (274)
T PRK13644          2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG   67 (274)
T ss_pred             EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECC
Confidence            45667788884 567999999999999999999999999999999999999999999999998764

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.7e-20  Score=127.93  Aligned_cols=66  Identities=30%  Similarity=0.482  Sum_probs=60.1

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++..++++.|+ ++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   72 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR   72 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhH
Confidence            367788888885 578999999999999999999999999999999999999999999999997653

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.78  E-value=2.2e-20  Score=126.77  Aligned_cols=66  Identities=29%  Similarity=0.533  Sum_probs=59.0

Q ss_pred             hccccccCCCCCcc----ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKP----AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~----vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|+.+.    +++++||++.+||++||+|+||||||||.++|+|+.+|++|+|.++|.+...
T Consensus         4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~   73 (252)
T COG1124           4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAP   73 (252)
T ss_pred             EEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCc
Confidence            45566677777766    9999999999999999999999999999999999999999999999976543

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.78  E-value=1.8e-20  Score=124.19  Aligned_cols=64  Identities=39%  Similarity=0.632  Sum_probs=58.3

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 ~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~   65 (223)
T TIGR03740         2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT   65 (223)
T ss_pred             EEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc
Confidence            4566777887788999999999999999999999999999999999999999999999987653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.8e-20  Score=133.13  Aligned_cols=65  Identities=25%  Similarity=0.405  Sum_probs=60.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~   68 (369)
T PRK11000          4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMN   68 (369)
T ss_pred             EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            56777788888888999999999999999999999999999999999999999999999998764

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.3e-20  Score=128.36  Aligned_cols=65  Identities=26%  Similarity=0.494  Sum_probs=58.3

Q ss_pred             hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|++     +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   72 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHIT   72 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            456677777763     46999999999999999999999999999999999999999999999998763

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.3e-20  Score=127.69  Aligned_cols=65  Identities=34%  Similarity=0.621  Sum_probs=58.2

Q ss_pred             hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++..++++.|+ .+.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus         4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   69 (277)
T PRK13652          4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPIT   69 (277)
T ss_pred             EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence            44566777884 457999999999999999999999999999999999999999999999998764

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.3e-20  Score=128.24  Aligned_cols=67  Identities=22%  Similarity=0.387  Sum_probs=60.5

Q ss_pred             hhhccccccCCCCCc-----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           7 QTVDSHLETFPYDTK-----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~-----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++++++++.|+++     ++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   76 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIP   76 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcc
Confidence            457788888888754     4999999999999999999999999999999999999999999999997753

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.78  E-value=3.1e-20  Score=120.55  Aligned_cols=56  Identities=32%  Similarity=0.579  Sum_probs=52.2

Q ss_pred             CCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        18 ~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      |+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   57 (190)
T TIGR01166         2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD   57 (190)
T ss_pred             CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcc
Confidence            45678999999999999999999999999999999999999999999999997763

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.78  E-value=2.1e-20  Score=132.23  Aligned_cols=65  Identities=25%  Similarity=0.432  Sum_probs=60.1

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~   67 (353)
T PRK10851          3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS   67 (353)
T ss_pred             EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            45667788888888999999999999999999999999999999999999999999999998764

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=1.9e-20  Score=132.64  Aligned_cols=65  Identities=25%  Similarity=0.446  Sum_probs=59.9

Q ss_pred             hccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.| +++.+|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~   69 (356)
T PRK11650          4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVN   69 (356)
T ss_pred             EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC
Confidence            5667778888 6788999999999999999999999999999999999999999999999998764

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.78  E-value=2e-20  Score=126.36  Aligned_cols=66  Identities=20%  Similarity=0.360  Sum_probs=60.7

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus         5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   70 (257)
T PRK10619          5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN   70 (257)
T ss_pred             cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence            356777888888888999999999999999999999999999999999999999999999997763

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.8e-20  Score=126.88  Aligned_cols=69  Identities=16%  Similarity=0.331  Sum_probs=61.9

Q ss_pred             ehhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           5 SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      +-..++++++++.|+++++++++||+|++||+++|+||||||||||+++|+|+.+     |++|+|.++|+++.
T Consensus        10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~   83 (260)
T PRK10744         10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL   83 (260)
T ss_pred             CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence            3446778888999988889999999999999999999999999999999999986     47999999998763

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.7e-20  Score=126.69  Aligned_cols=67  Identities=27%  Similarity=0.494  Sum_probs=60.5

Q ss_pred             hhhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           7 QTVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         7 ~~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..+++.++++.|++  +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.
T Consensus         6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   74 (269)
T PRK13648          6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAIT   74 (269)
T ss_pred             ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence            35677888888865  45999999999999999999999999999999999999999999999998764

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.78  E-value=2.4e-20  Score=126.94  Aligned_cols=65  Identities=34%  Similarity=0.593  Sum_probs=57.9

Q ss_pred             hccccccCCCC---------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD---------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~---------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+         .+++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         5 l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   78 (267)
T PRK15112          5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH   78 (267)
T ss_pred             EEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence            55667777774         247999999999999999999999999999999999999999999999997764

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=2.2e-20  Score=124.74  Aligned_cols=66  Identities=24%  Similarity=0.429  Sum_probs=62.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|+.+.+++++|++|++|.+++|+|||||||||||.+++++.++++|+|+++|+++..
T Consensus         2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~   67 (252)
T COG4604           2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS   67 (252)
T ss_pred             eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeeccc
Confidence            567788999999999999999999999999999999999999999999999999999999998754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.4e-20  Score=128.18  Aligned_cols=65  Identities=22%  Similarity=0.491  Sum_probs=58.0

Q ss_pred             hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|++     +++|+++||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~   72 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIT   72 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            456667777753     46999999999999999999999999999999999999999999999998764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.78  E-value=2.2e-20  Score=126.91  Aligned_cols=65  Identities=29%  Similarity=0.539  Sum_probs=57.5

Q ss_pred             hccccccCCCC---------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD---------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~---------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+         ++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   76 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLY   76 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcc
Confidence            44566677664         367999999999999999999999999999999999999999999999998764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.78  E-value=2.9e-20  Score=117.02  Aligned_cols=61  Identities=30%  Similarity=0.491  Sum_probs=55.9

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      +..++++.|++.++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++++
T Consensus         2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~   62 (144)
T cd03221           2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST   62 (144)
T ss_pred             EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe
Confidence            4566777787778999999999999999999999999999999999999999999999874

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.78  E-value=3.1e-20  Score=123.83  Aligned_cols=64  Identities=27%  Similarity=0.467  Sum_probs=57.2

Q ss_pred             ccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|+  ++++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 ~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   67 (237)
T cd03252           2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLA   67 (237)
T ss_pred             EEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehH
Confidence            4566777775  357999999999999999999999999999999999999999999999997653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.78  E-value=2.3e-20  Score=125.58  Aligned_cols=65  Identities=15%  Similarity=0.382  Sum_probs=59.0

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++.
T Consensus         5 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~   74 (253)
T PRK14267          5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY   74 (253)
T ss_pred             EEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence            5667778888878899999999999999999999999999999999999987     4999999998764

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.78  E-value=2.5e-20  Score=131.60  Aligned_cols=66  Identities=27%  Similarity=0.441  Sum_probs=58.4

Q ss_pred             hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|++    .++|+++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++..
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~   71 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT   71 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence            456667777742    479999999999999999999999999999999999999999999999987753

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=2.8e-20  Score=128.13  Aligned_cols=65  Identities=23%  Similarity=0.464  Sum_probs=58.7

Q ss_pred             hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.+++++.|++     +++|+++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   72 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT   72 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            556777777753     56999999999999999999999999999999999999999999999998764

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.3e-20  Score=125.63  Aligned_cols=67  Identities=21%  Similarity=0.332  Sum_probs=59.7

Q ss_pred             hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      +.+++.++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+     |++|+|.++|+++.
T Consensus         5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~   76 (253)
T PRK14242          5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY   76 (253)
T ss_pred             cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence            34667788888887889999999999999999999999999999999999864     57999999998764

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.77  E-value=3.1e-20  Score=124.40  Aligned_cols=65  Identities=22%  Similarity=0.322  Sum_probs=58.7

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||+|++|++++|+|+||||||||+++|+|+.  +|++|+|+++|.++.
T Consensus         2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~   68 (248)
T PRK09580          2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL   68 (248)
T ss_pred             eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence            45677788888888999999999999999999999999999999999995  699999999997763

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=3.9e-20  Score=126.16  Aligned_cols=66  Identities=35%  Similarity=0.605  Sum_probs=59.9

Q ss_pred             hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+  ++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~   74 (271)
T PRK13632          7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIS   74 (271)
T ss_pred             EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC
Confidence            466778888884  468999999999999999999999999999999999999999999999998764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.77  E-value=4e-20  Score=134.92  Aligned_cols=66  Identities=30%  Similarity=0.407  Sum_probs=61.1

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~   70 (510)
T PRK09700          5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYN   70 (510)
T ss_pred             eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECC
Confidence            366778888898888999999999999999999999999999999999999999999999997764

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.77  E-value=3.6e-20  Score=123.61  Aligned_cols=64  Identities=28%  Similarity=0.489  Sum_probs=56.8

Q ss_pred             ccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|++   +++++++||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   68 (238)
T cd03249           2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR   68 (238)
T ss_pred             eEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehh
Confidence            45666777753   46999999999999999999999999999999999999999999999997654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.77  E-value=4.5e-20  Score=120.86  Aligned_cols=60  Identities=25%  Similarity=0.456  Sum_probs=54.8

Q ss_pred             ccccccCCCCCc-----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220          10 DSHLETFPYDTK-----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        10 ~~~~~~~~~~~~-----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      +++++++.|+++     ++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus         2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g   66 (204)
T cd03250           2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG   66 (204)
T ss_pred             EEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC
Confidence            456777777653     699999999999999999999999999999999999999999999987

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=3.6e-20  Score=127.15  Aligned_cols=65  Identities=32%  Similarity=0.548  Sum_probs=59.8

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      .++++++++.|+ ++.+++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++
T Consensus         5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~   70 (283)
T PRK13636          5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI   70 (283)
T ss_pred             eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEEC
Confidence            366778888885 57899999999999999999999999999999999999999999999999876

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.77  E-value=3.9e-20  Score=123.15  Aligned_cols=64  Identities=28%  Similarity=0.543  Sum_probs=57.6

Q ss_pred             ccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +..++++.|+ ++.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~   66 (236)
T cd03253           2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIR   66 (236)
T ss_pred             EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhh
Confidence            4566777775 467999999999999999999999999999999999999999999999997764

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.77  E-value=3.8e-20  Score=120.78  Aligned_cols=64  Identities=28%  Similarity=0.473  Sum_probs=56.1

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.+++++.|+++.+++ +||++++||+++|+|+||||||||+++|+|+.+|++|++.++|.++.
T Consensus         2 l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~   65 (195)
T PRK13541          2 LSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN   65 (195)
T ss_pred             eEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccC
Confidence            34566677777666665 99999999999999999999999999999999999999999997753

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.77  E-value=3.4e-20  Score=122.76  Aligned_cols=64  Identities=23%  Similarity=0.339  Sum_probs=57.4

Q ss_pred             ccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|++    +.+++++||++++|++++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus         3 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~   70 (220)
T TIGR02982         3 SIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELY   70 (220)
T ss_pred             EEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhH
Confidence            45566777754    67999999999999999999999999999999999999999999999998764

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=4.1e-20  Score=126.76  Aligned_cols=65  Identities=31%  Similarity=0.507  Sum_probs=59.1

Q ss_pred             hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|++  +++++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus         6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~   72 (279)
T PRK13635          6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLS   72 (279)
T ss_pred             EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECC
Confidence            567777877754  57999999999999999999999999999999999999999999999998764

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=4.2e-20  Score=126.29  Aligned_cols=65  Identities=35%  Similarity=0.630  Sum_probs=58.5

Q ss_pred             hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+ .+++++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~   67 (275)
T PRK13639          2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK   67 (275)
T ss_pred             EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECc
Confidence            45667777785 467999999999999999999999999999999999999999999999998763

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.77  E-value=3.3e-20  Score=121.71  Aligned_cols=65  Identities=25%  Similarity=0.394  Sum_probs=58.4

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece--eecCCCceeeeeccccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl--~~~~~G~i~~~~~~i~~   74 (80)
                      +++++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+  .+|++|+|.++|+++..
T Consensus         2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~   68 (200)
T cd03217           2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD   68 (200)
T ss_pred             eEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc
Confidence            456777888778899999999999999999999999999999999999  47999999999987643

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.77  E-value=4.3e-20  Score=134.63  Aligned_cols=66  Identities=24%  Similarity=0.363  Sum_probs=60.9

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~   69 (501)
T PRK10762          4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVT   69 (501)
T ss_pred             eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            366778888898888999999999999999999999999999999999999999999999997753

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.77  E-value=3.5e-20  Score=123.67  Aligned_cols=64  Identities=31%  Similarity=0.481  Sum_probs=59.1

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|+++++++++||++++|++++|+|+||||||||+++|+|+++|+.|+|+++|+++.
T Consensus         2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~   65 (232)
T cd03300           2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT   65 (232)
T ss_pred             EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence            4567788888888999999999999999999999999999999999999999999999998764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=3.4e-20  Score=125.35  Aligned_cols=65  Identities=17%  Similarity=0.321  Sum_probs=59.3

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeeccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSI   72 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i   72 (80)
                      .+++.++++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|+++
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~   73 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDL   73 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEec
Confidence            46678888888888899999999999999999999999999999999999874     699999999876

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.77  E-value=4e-20  Score=124.39  Aligned_cols=66  Identities=26%  Similarity=0.511  Sum_probs=61.6

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++..++++...++.+++++||++++||+++|+||||||||||++.|+|...|++|++.++|.++..
T Consensus         2 i~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~   67 (259)
T COG4559           2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS   67 (259)
T ss_pred             eeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh
Confidence            456778888899999999999999999999999999999999999999999999999999988654

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.77  E-value=4.2e-20  Score=123.71  Aligned_cols=64  Identities=22%  Similarity=0.407  Sum_probs=58.9

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|+++++++++||++.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~   65 (237)
T TIGR00968         2 EIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT   65 (237)
T ss_pred             EEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcC
Confidence            4567778888888999999999999999999999999999999999999999999999987764

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.77  E-value=3.6e-20  Score=126.95  Aligned_cols=65  Identities=23%  Similarity=0.406  Sum_probs=59.5

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC--------CCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT--------SGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~--------~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|+        +|+|.++|.++.
T Consensus         2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~   74 (272)
T PRK13547          2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA   74 (272)
T ss_pred             eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence            45677788888889999999999999999999999999999999999999998        899999997754

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.77  E-value=3.4e-20  Score=126.22  Aligned_cols=66  Identities=17%  Similarity=0.275  Sum_probs=60.4

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+.+|     ++|+|+++|+++.
T Consensus        19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~   89 (267)
T PRK14235         19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY   89 (267)
T ss_pred             eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence            56678888888888899999999999999999999999999999999999874     8999999998764

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=4.9e-20  Score=126.30  Aligned_cols=66  Identities=30%  Similarity=0.582  Sum_probs=59.1

Q ss_pred             hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|++   +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   72 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLT   72 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECC
Confidence            3566777887753   45999999999999999999999999999999999999999999999998764

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.77  E-value=4.4e-20  Score=121.89  Aligned_cols=65  Identities=25%  Similarity=0.467  Sum_probs=58.4

Q ss_pred             hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+.  +++++++||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   69 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS   69 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhH
Confidence            456777887753  47999999999999999999999999999999999999999999999997754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.77  E-value=3.5e-20  Score=131.59  Aligned_cols=68  Identities=21%  Similarity=0.448  Sum_probs=63.4

Q ss_pred             hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC--Cceeeeecccc
Q psy7220           6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS--GNAYVMNHSIR   73 (80)
Q Consensus         6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~--G~i~~~~~~i~   73 (80)
                      |..++++++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.+|++  |+|.++|+++.
T Consensus         3 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~   72 (362)
T TIGR03258         3 CGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT   72 (362)
T ss_pred             ceEEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECC
Confidence            456788899999988889999999999999999999999999999999999999999  99999998764

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=3.8e-20  Score=126.18  Aligned_cols=66  Identities=23%  Similarity=0.347  Sum_probs=60.2

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|+++.
T Consensus        13 ~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~   83 (269)
T PRK14259         13 IISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY   83 (269)
T ss_pred             eEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            4677888888988889999999999999999999999999999999999987     58999999997753

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=4.7e-20  Score=123.94  Aligned_cols=65  Identities=17%  Similarity=0.302  Sum_probs=58.8

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee---cCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~---~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+++   |++|+|.++|+++.
T Consensus         3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~   70 (246)
T PRK14269          3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK   70 (246)
T ss_pred             eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecc
Confidence            456777888888889999999999999999999999999999999999974   68999999998764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.77  E-value=4.8e-20  Score=124.21  Aligned_cols=64  Identities=25%  Similarity=0.444  Sum_probs=55.8

Q ss_pred             cccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          11 SHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        11 ~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ..++++.|+.    ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|.+.++|+++..
T Consensus         4 ~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~   71 (226)
T COG1136           4 LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTK   71 (226)
T ss_pred             EeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCc
Confidence            4455555532    479999999999999999999999999999999999999999999999987653

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=4e-20  Score=124.26  Aligned_cols=65  Identities=17%  Similarity=0.357  Sum_probs=58.0

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|+++|.++.
T Consensus         4 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   73 (250)
T PRK14247          4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF   73 (250)
T ss_pred             EEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence            4566667778778899999999999999999999999999999999999874     6999999998764

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.77  E-value=4.9e-20  Score=122.18  Aligned_cols=67  Identities=28%  Similarity=0.463  Sum_probs=59.9

Q ss_pred             hhhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           7 QTVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         7 ~~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..++..++++.|++   ..+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus        10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   79 (226)
T cd03248          10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS   79 (226)
T ss_pred             ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchH
Confidence            35667778888864   36999999999999999999999999999999999999999999999998764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.77  E-value=4.4e-20  Score=120.71  Aligned_cols=65  Identities=23%  Similarity=0.312  Sum_probs=59.2

Q ss_pred             hccccccCCCCC------ccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT------KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~------~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|++      +++++++||++++||+++|+||||||||||+++|+|+.  +|++|+|.++|+++.
T Consensus         4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~   76 (194)
T cd03213           4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD   76 (194)
T ss_pred             EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc
Confidence            566777888865      67999999999999999999999999999999999999  999999999998764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.77  E-value=5.6e-20  Score=123.55  Aligned_cols=66  Identities=21%  Similarity=0.375  Sum_probs=59.5

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece--eecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl--~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++.+|+++||++++||+++|+|+||||||||+++|+|+  ++|++|+|+++|.++.
T Consensus         7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~   74 (252)
T CHL00131          7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESIL   74 (252)
T ss_pred             eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcc
Confidence            36677788888878899999999999999999999999999999999998  5789999999987754

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=5.4e-20  Score=124.47  Aligned_cols=67  Identities=19%  Similarity=0.307  Sum_probs=60.5

Q ss_pred             hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      ..+++.++++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|+++.
T Consensus        11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~   82 (258)
T PRK14268         11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY   82 (258)
T ss_pred             eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence            356778888888888899999999999999999999999999999999999875     7999999998763

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=7.1e-20  Score=125.43  Aligned_cols=65  Identities=28%  Similarity=0.544  Sum_probs=57.8

Q ss_pred             hccccccCCCCC------ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT------KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~------~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|++      +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~   75 (280)
T PRK13633          5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTS   75 (280)
T ss_pred             EEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecc
Confidence            455666777752      57999999999999999999999999999999999999999999999998764

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=8.7e-20  Score=120.46  Aligned_cols=70  Identities=26%  Similarity=0.524  Sum_probs=63.9

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD   77 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~~~   77 (80)
                      .++.++++...+.++++.++||.+.+||.+.|.||||||||||+|+|+|+.+|++|+|+|++..+...++
T Consensus         2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~   71 (209)
T COG4133           2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE   71 (209)
T ss_pred             cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh
Confidence            3566788888899999999999999999999999999999999999999999999999999988776543

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.76  E-value=5.4e-20  Score=131.19  Aligned_cols=66  Identities=27%  Similarity=0.493  Sum_probs=61.5

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|++.++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus        14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~   79 (375)
T PRK09452         14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT   79 (375)
T ss_pred             eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            366788888898888999999999999999999999999999999999999999999999998764

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=5.9e-20  Score=126.45  Aligned_cols=65  Identities=26%  Similarity=0.486  Sum_probs=57.3

Q ss_pred             hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+.     +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~   71 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVS   71 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECc
Confidence            445666777753     25999999999999999999999999999999999999999999999998764

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.76  E-value=7.9e-20  Score=120.17  Aligned_cols=65  Identities=22%  Similarity=0.242  Sum_probs=57.8

Q ss_pred             hccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceee---cCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~---~~~G~i~~~~~~i~   73 (80)
                      +..+++++.|+    ++.+++++||++++|++++|+|+||||||||+++|+|+++   |++|+|.++|+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~   75 (202)
T cd03233           4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK   75 (202)
T ss_pred             EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECc
Confidence            45567777774    4689999999999999999999999999999999999998   89999999998764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.76  E-value=6.1e-20  Score=124.42  Aligned_cols=62  Identities=24%  Similarity=0.434  Sum_probs=57.2

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      ++++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.+++.
T Consensus         5 l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~   66 (251)
T PRK09544          5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK   66 (251)
T ss_pred             EEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc
Confidence            56677788888888999999999999999999999999999999999999999999998763

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=5.7e-20  Score=123.88  Aligned_cols=66  Identities=21%  Similarity=0.304  Sum_probs=59.8

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+++|     ++|+|+++|+++.
T Consensus         7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~   77 (254)
T PRK14273          7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY   77 (254)
T ss_pred             eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence            46777888888888899999999999999999999999999999999999987     4899999998763

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=5.9e-20  Score=123.52  Aligned_cols=65  Identities=22%  Similarity=0.318  Sum_probs=59.0

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+.+++++++||+|++||+++|+|+||||||||+++|+|+.+     |++|+|.++|+++.
T Consensus         5 l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~   74 (251)
T PRK14251          5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY   74 (251)
T ss_pred             EEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcc
Confidence            567788888888889999999999999999999999999999999999986     47999999998763

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.76  E-value=7e-20  Score=133.94  Aligned_cols=66  Identities=29%  Similarity=0.441  Sum_probs=61.2

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus        11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   76 (510)
T PRK15439         11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCA   76 (510)
T ss_pred             eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            367788899998888999999999999999999999999999999999999999999999997654

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=6.5e-20  Score=123.23  Aligned_cols=65  Identities=20%  Similarity=0.344  Sum_probs=58.4

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++.
T Consensus         4 l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~   73 (250)
T PRK14262          4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIY   73 (250)
T ss_pred             EEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence            5567778888778899999999999999999999999999999999999874     8899999997764

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.76  E-value=6.8e-20  Score=133.84  Aligned_cols=67  Identities=28%  Similarity=0.512  Sum_probs=61.6

Q ss_pred             hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~  401 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS  401 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence            4778889999965 569999999999999999999999999999999999999999999999987653

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=6.6e-20  Score=124.62  Aligned_cols=66  Identities=23%  Similarity=0.332  Sum_probs=59.9

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+.+     |++|+|+++|+++.
T Consensus        21 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~   91 (268)
T PRK14248         21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL   91 (268)
T ss_pred             eEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence            3677888888988889999999999999999999999999999999999864     68999999998764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.76  E-value=8.2e-20  Score=132.63  Aligned_cols=64  Identities=22%  Similarity=0.370  Sum_probs=59.0

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +++.++++.|+++.+|+++||++++|++++|+||||||||||+++|+|+.+|++|+|.+++.++
T Consensus         4 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~   67 (490)
T PRK10938          4 LQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI   67 (490)
T ss_pred             EEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCccc
Confidence            5677778888888899999999999999999999999999999999999999999999987654

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.76  E-value=9.1e-20  Score=133.67  Aligned_cols=67  Identities=30%  Similarity=0.470  Sum_probs=63.1

Q ss_pred             hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .-++.++++++|++.++|+++||++.+||+.+|+|.||||||||+|+|+|.++|++|+|.++|+++.
T Consensus         7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~   73 (500)
T COG1129           7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVA   73 (500)
T ss_pred             ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEcc
Confidence            3466888999999999999999999999999999999999999999999999999999999998764

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.76  E-value=8.4e-20  Score=118.18  Aligned_cols=61  Identities=30%  Similarity=0.418  Sum_probs=55.0

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.+++++.|    +++++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         5 l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   65 (182)
T cd03215           5 LEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT   65 (182)
T ss_pred             EEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence            4455666666    999999999999999999999999999999999999999999999997764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.76  E-value=7.8e-20  Score=123.46  Aligned_cols=64  Identities=22%  Similarity=0.409  Sum_probs=57.5

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec----CCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~----~~G~i~~~~~~i~   73 (80)
                      +++.++++.| ++++++++||++++||+++|+|+||||||||+++|+|+.+|    ++|+|+++|+++.
T Consensus         5 l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~   72 (254)
T PRK10418          5 IELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA   72 (254)
T ss_pred             EEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecc
Confidence            4566677777 56899999999999999999999999999999999999999    9999999998763

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.76  E-value=8.5e-20  Score=123.57  Aligned_cols=67  Identities=18%  Similarity=0.299  Sum_probs=61.1

Q ss_pred             hhhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           7 QTVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         7 ~~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..++.+++++.|+.  +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus        18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~   86 (257)
T cd03288          18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDIS   86 (257)
T ss_pred             ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhh
Confidence            46778888888875  57999999999999999999999999999999999999999999999998764

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=9.6e-20  Score=126.66  Aligned_cols=64  Identities=20%  Similarity=0.359  Sum_probs=56.5

Q ss_pred             hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ++++++++.|++     ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~   71 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE   71 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceec
Confidence            456667777754     2599999999999999999999999999999999999999999999987654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.76  E-value=8.2e-20  Score=124.65  Aligned_cols=66  Identities=23%  Similarity=0.387  Sum_probs=60.1

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+     |++|+|.++|.++.
T Consensus        24 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~   94 (271)
T PRK14238         24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF   94 (271)
T ss_pred             EEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence            4677888888888889999999999999999999999999999999999987     68999999998763

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.76  E-value=9.3e-20  Score=124.22  Aligned_cols=65  Identities=26%  Similarity=0.460  Sum_probs=57.9

Q ss_pred             hccccccCCCC---------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD---------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~---------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+         ++++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~   77 (268)
T PRK10419          4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLA   77 (268)
T ss_pred             EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc
Confidence            45566677775         468999999999999999999999999999999999999999999999998654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.76  E-value=7.6e-20  Score=122.92  Aligned_cols=65  Identities=18%  Similarity=0.304  Sum_probs=58.2

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|+++.
T Consensus         4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~   73 (250)
T PRK14240          4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY   73 (250)
T ss_pred             EEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            5667778888878899999999999999999999999999999999998763     6899999998764

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.76  E-value=8e-20  Score=119.92  Aligned_cols=67  Identities=25%  Similarity=0.417  Sum_probs=59.9

Q ss_pred             hhhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           7 QTVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         7 ~~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..+++.++++.|++  +.+++++||++++|++++|+|+||||||||+++|+|+.+|++|+|.++|.++.
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   73 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIS   73 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhH
Confidence            34667778888864  47999999999999999999999999999999999999999999999997753

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.76  E-value=1.3e-19  Score=119.73  Aligned_cols=63  Identities=16%  Similarity=0.282  Sum_probs=56.5

Q ss_pred             cccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          11 SHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        11 ~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +.+..+.|+ +.++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus         3 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   66 (218)
T cd03290           3 VTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNES   66 (218)
T ss_pred             eeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccc
Confidence            455677775 467999999999999999999999999999999999999999999999987653

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=9.2e-20  Score=122.81  Aligned_cols=66  Identities=18%  Similarity=0.307  Sum_probs=59.0

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++.+|+++||++++||+++|+|+||||||||+++|+|+.++     ++|+|.++|+++.
T Consensus         6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~   76 (253)
T PRK14261          6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM   76 (253)
T ss_pred             eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcc
Confidence            46677888888888999999999999999999999999999999999998753     4899999998764

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=1e-19  Score=127.23  Aligned_cols=66  Identities=24%  Similarity=0.334  Sum_probs=59.5

Q ss_pred             hhccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|++     .++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++.
T Consensus        21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~   91 (320)
T PRK13631         21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIG   91 (320)
T ss_pred             eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcc
Confidence            3677888888864     36999999999999999999999999999999999999999999999987764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.76  E-value=8.6e-20  Score=123.61  Aligned_cols=65  Identities=20%  Similarity=0.443  Sum_probs=58.8

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC---CCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|+   +|+|.++|+++.
T Consensus         5 l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~   72 (262)
T PRK09984          5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQ   72 (262)
T ss_pred             EEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecc
Confidence            56677788888889999999999999999999999999999999999999876   499999998764

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.76  E-value=1e-19  Score=119.60  Aligned_cols=62  Identities=23%  Similarity=0.476  Sum_probs=54.6

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|+++.  .++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++.
T Consensus         2 ~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~   63 (211)
T cd03298           2 RLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVT   63 (211)
T ss_pred             EEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcC
Confidence            4566677777654  3999999999999999999999999999999999999999999998764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.75  E-value=1.4e-19  Score=121.31  Aligned_cols=57  Identities=44%  Similarity=0.679  Sum_probs=53.2

Q ss_pred             CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +.|+.+++|+++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++
T Consensus        29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~   85 (236)
T cd03267          29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP   85 (236)
T ss_pred             cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc
Confidence            456778899999999999999999999999999999999999999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=8.2e-20  Score=123.01  Aligned_cols=65  Identities=18%  Similarity=0.353  Sum_probs=58.2

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee--c---CCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~--~---~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+++  |   ++|+|.++|+++.
T Consensus         5 l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~   74 (252)
T PRK14256          5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY   74 (252)
T ss_pred             EEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcc
Confidence            456777888887889999999999999999999999999999999999986  3   5899999998764

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.75  E-value=9.4e-20  Score=124.03  Aligned_cols=66  Identities=20%  Similarity=0.302  Sum_probs=60.1

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++|+++||++++||+++|+|+||||||||+++|+|+++     |++|+|.++|+++.
T Consensus        20 ~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~   90 (267)
T PRK14237         20 ALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN   90 (267)
T ss_pred             EEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence            5677788888888899999999999999999999999999999999999986     57999999998764

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=9e-20  Score=122.54  Aligned_cols=66  Identities=26%  Similarity=0.393  Sum_probs=59.1

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-----CCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-----~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.++|+++.
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~   74 (252)
T PRK14272          4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY   74 (252)
T ss_pred             EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence            356677788888888999999999999999999999999999999999998764     799999998764

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.75  E-value=1.2e-19  Score=116.35  Aligned_cols=61  Identities=20%  Similarity=0.299  Sum_probs=54.7

Q ss_pred             ccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          10 DSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        10 ~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      +.+++++.|+ ++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus         2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~   63 (166)
T cd03223           2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG   63 (166)
T ss_pred             EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC
Confidence            4566777774 467999999999999999999999999999999999999999999999863

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=9.3e-20  Score=123.26  Aligned_cols=66  Identities=23%  Similarity=0.333  Sum_probs=59.3

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee--c---CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~--~---~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+  |   ++|+|+++|+++.
T Consensus        12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~   82 (259)
T PRK14274         12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL   82 (259)
T ss_pred             eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence            4677778888888889999999999999999999999999999999999987  3   5899999998764

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.75  E-value=1.2e-19  Score=120.18  Aligned_cols=61  Identities=31%  Similarity=0.495  Sum_probs=54.0

Q ss_pred             hccccccCCCCC-------ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           9 VDSHLETFPYDT-------KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         9 ~~~~~~~~~~~~-------~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      +++.++++.|+.       ..+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++
T Consensus         2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~   69 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRH   69 (224)
T ss_pred             EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEec
Confidence            345666777742       4799999999999999999999999999999999999999999999983

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1e-19  Score=122.45  Aligned_cols=65  Identities=23%  Similarity=0.334  Sum_probs=57.9

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++.
T Consensus         5 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~   74 (251)
T PRK14270          5 MESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY   74 (251)
T ss_pred             EEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence            4456667778778899999999999999999999999999999999999875     7899999998764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=1.2e-19  Score=132.35  Aligned_cols=66  Identities=27%  Similarity=0.395  Sum_probs=60.3

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec--CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||++++||+++|+||||||||||+++|+|+++|  ++|+|+++|.++.
T Consensus         5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~   72 (506)
T PRK13549          5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ   72 (506)
T ss_pred             eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence            36777888888888899999999999999999999999999999999999986  7999999998763

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.3e-19  Score=132.03  Aligned_cols=66  Identities=29%  Similarity=0.486  Sum_probs=60.7

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||++++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~   69 (501)
T PRK11288          4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMR   69 (501)
T ss_pred             eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence            456778888888888999999999999999999999999999999999999999999999997763

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.75  E-value=1.4e-19  Score=120.99  Aligned_cols=63  Identities=27%  Similarity=0.478  Sum_probs=56.9

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|++. +++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++.
T Consensus         2 ~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~   64 (235)
T cd03299           2 KVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT   64 (235)
T ss_pred             eeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcC
Confidence            456677777654 899999999999999999999999999999999999999999999998764

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=1.7e-19  Score=123.79  Aligned_cols=65  Identities=35%  Similarity=0.603  Sum_probs=58.2

Q ss_pred             hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC---Cceeeeecccc
Q psy7220           9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~---G~i~~~~~~i~   73 (80)
                      ++++++++.|++  +++++++||+|++||+++|+||||||||||+++|+|+++|++   |+|+++|+++.
T Consensus         6 l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~   75 (282)
T PRK13640          6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLT   75 (282)
T ss_pred             EEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECC
Confidence            556777887854  569999999999999999999999999999999999999987   89999998764

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=1.3e-19  Score=129.20  Aligned_cols=66  Identities=32%  Similarity=0.540  Sum_probs=61.3

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|++..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus        19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~   84 (377)
T PRK11607         19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS   84 (377)
T ss_pred             eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            367788888888888999999999999999999999999999999999999999999999998764

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.6e-19  Score=135.28  Aligned_cols=62  Identities=19%  Similarity=0.310  Sum_probs=58.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      +++.++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++.
T Consensus         2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~   63 (638)
T PRK10636          2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN   63 (638)
T ss_pred             EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence            46778899999999999999999999999999999999999999999999999999998774

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.74  E-value=2.1e-19  Score=122.95  Aligned_cols=65  Identities=25%  Similarity=0.515  Sum_probs=58.0

Q ss_pred             hccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|++   ..+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~   72 (277)
T PRK13642          5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLT   72 (277)
T ss_pred             EEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECC
Confidence            556677777753   35999999999999999999999999999999999999999999999998764

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.74  E-value=1.9e-19  Score=131.21  Aligned_cols=66  Identities=35%  Similarity=0.492  Sum_probs=62.3

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++.+++++.|++..+++++||++++||+.+|+|+||||||||+++|.|+++|++|+|+++|+++.
T Consensus         4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~   69 (501)
T COG3845           4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVR   69 (501)
T ss_pred             eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEec
Confidence            466788899999999999999999999999999999999999999999999999999999998764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.74  E-value=2.1e-19  Score=130.68  Aligned_cols=62  Identities=26%  Similarity=0.357  Sum_probs=57.3

Q ss_pred             ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++.|+++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   63 (491)
T PRK10982          2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID   63 (491)
T ss_pred             CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECC
Confidence            45677888888999999999999999999999999999999999999999999999998763

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.74  E-value=1.6e-19  Score=117.81  Aligned_cols=64  Identities=25%  Similarity=0.329  Sum_probs=55.8

Q ss_pred             hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeeeeccc
Q psy7220           9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSI   72 (80)
Q Consensus         9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~~~~i   72 (80)
                      ++..++++.|++    +++++++||++++|++++|+||||||||||+++|+|+.  +|++|++.++|+++
T Consensus         4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~   73 (192)
T cd03232           4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL   73 (192)
T ss_pred             EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence            345666777753    67999999999999999999999999999999999985  48999999998775

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.74  E-value=2.5e-19  Score=127.42  Aligned_cols=59  Identities=34%  Similarity=0.615  Sum_probs=55.2

Q ss_pred             CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus         1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~   59 (363)
T TIGR01186         1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK   59 (363)
T ss_pred             CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc
Confidence            35778889999999999999999999999999999999999999999999999988753

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.74  E-value=2e-19  Score=129.20  Aligned_cols=59  Identities=29%  Similarity=0.479  Sum_probs=53.1

Q ss_pred             cCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        15 ~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ...|+...+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.
T Consensus        35 ~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~   93 (400)
T PRK10070         35 LEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIA   93 (400)
T ss_pred             HhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECC
Confidence            33444455899999999999999999999999999999999999999999999998764

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.7e-19  Score=124.17  Aligned_cols=65  Identities=14%  Similarity=0.314  Sum_probs=59.6

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|+++.
T Consensus        40 l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~  109 (285)
T PRK14254         40 IEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY  109 (285)
T ss_pred             EEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence            667888888888889999999999999999999999999999999999986     68999999998763

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.7e-19  Score=123.58  Aligned_cols=66  Identities=26%  Similarity=0.344  Sum_probs=60.6

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++.
T Consensus        21 ~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~   91 (276)
T PRK14271         21 AMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF   91 (276)
T ss_pred             EEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcc
Confidence            46778889999888999999999999999999999999999999999999985     6999999997764

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.74  E-value=1.8e-19  Score=136.61  Aligned_cols=67  Identities=27%  Similarity=0.541  Sum_probs=62.5

Q ss_pred             hhccccccCCCCCc--cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~--~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.++++|+|+..  .+|+++||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|.++.+
T Consensus       471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~  539 (709)
T COG2274         471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND  539 (709)
T ss_pred             eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHh
Confidence            68889999999765  69999999999999999999999999999999999999999999999998754

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.7e-19  Score=121.41  Aligned_cols=65  Identities=18%  Similarity=0.311  Sum_probs=58.7

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-----CCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-----~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++.+++++||+|++|++++|+|+||||||||+++|+|+++|+     +|+|+++|.++.
T Consensus         5 l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~   74 (251)
T PRK14249          5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIY   74 (251)
T ss_pred             EEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcc
Confidence            55667788888788999999999999999999999999999999999999987     699999998764

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=2.5e-19  Score=125.30  Aligned_cols=66  Identities=26%  Similarity=0.563  Sum_probs=57.3

Q ss_pred             hccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|..     ..+++++||+|++||++||+|.||||||||+|+++++..|++|+|.++|+++..
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~   72 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA   72 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEeccc
Confidence            344555555543     579999999999999999999999999999999999999999999999987654

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.5e-19  Score=121.43  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=57.5

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++.+++++||+|++||+++|+||||||||||+++|+|+.+|     ++|+++++|.++.
T Consensus         4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~   73 (249)
T PRK14253          4 FNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY   73 (249)
T ss_pred             EEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc
Confidence            3456667777778899999999999999999999999999999999999886     5899999997763

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.74  E-value=2.2e-19  Score=130.71  Aligned_cols=65  Identities=31%  Similarity=0.506  Sum_probs=59.0

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec--CCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||++++|++++|+||||||||||+++|+|+.+|  ++|+|+++|+++.
T Consensus         2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~   68 (500)
T TIGR02633         2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK   68 (500)
T ss_pred             EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence            4567788888888899999999999999999999999999999999999986  7999999997764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.74  E-value=2.3e-19  Score=118.96  Aligned_cols=66  Identities=30%  Similarity=0.500  Sum_probs=59.4

Q ss_pred             hccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++..++++.|.+ +++|+++||+|++||++-|+||||||||||+|+|++..+|+.|+|.++|+++..
T Consensus         2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~   68 (223)
T COG2884           2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR   68 (223)
T ss_pred             eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccc
Confidence            455667787754 569999999999999999999999999999999999999999999999998764

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.74  E-value=2.2e-19  Score=120.70  Aligned_cols=66  Identities=24%  Similarity=0.367  Sum_probs=58.3

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee--c---CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~--~---~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++.+++++||++++||+++|+||||||||||+++|+|+.+  |   ++|+|.++|+++.
T Consensus         5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~   75 (252)
T PRK14239          5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIY   75 (252)
T ss_pred             eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECc
Confidence            3567777888888889999999999999999999999999999999999853  6   4899999998763

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.74  E-value=2.4e-19  Score=134.49  Aligned_cols=67  Identities=24%  Similarity=0.499  Sum_probs=61.6

Q ss_pred             hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|+  ++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~  519 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG  519 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence            477888999984  3579999999999999999999999999999999999999999999999988753

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=2.1e-19  Score=121.91  Aligned_cols=67  Identities=22%  Similarity=0.393  Sum_probs=61.1

Q ss_pred             hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-----CCceeeeeccc
Q psy7220           6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-----SGNAYVMNHSI   72 (80)
Q Consensus         6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-----~G~i~~~~~~i   72 (80)
                      +..+++.++++.|++..+++++||++++||+++|+|+||||||||+++|+|+.+|+     +|+|.++|+++
T Consensus         5 ~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i   76 (261)
T PRK14258          5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNI   76 (261)
T ss_pred             cceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEh
Confidence            45678888899998878999999999999999999999999999999999999985     79999998775

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.74  E-value=2.2e-19  Score=126.08  Aligned_cols=53  Identities=26%  Similarity=0.491  Sum_probs=50.5

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.
T Consensus        34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~   86 (331)
T PRK15079         34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL   86 (331)
T ss_pred             eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence            46999999999999999999999999999999999999999999999998764

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.74  E-value=1.8e-19  Score=122.49  Aligned_cols=65  Identities=14%  Similarity=0.269  Sum_probs=58.6

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeeccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSI   72 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i   72 (80)
                      .+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+     |++|+|+++|+++
T Consensus        10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i   79 (264)
T PRK14243         10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL   79 (264)
T ss_pred             EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEc
Confidence            3567788888888889999999999999999999999999999999999976     3789999999776

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=2.5e-19  Score=131.30  Aligned_cols=61  Identities=34%  Similarity=0.646  Sum_probs=57.1

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      ++++++++.|+++++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus         2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~   62 (530)
T PRK15064          2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP   62 (530)
T ss_pred             EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence            4667788889888999999999999999999999999999999999999999999999976

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=2e-19  Score=121.74  Aligned_cols=66  Identities=24%  Similarity=0.368  Sum_probs=59.5

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|+++.
T Consensus         7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~   77 (259)
T PRK14260          7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIY   77 (259)
T ss_pred             eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecc
Confidence            46677888888888899999999999999999999999999999999999885     4899999998764

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.74  E-value=3.1e-19  Score=118.96  Aligned_cols=63  Identities=29%  Similarity=0.487  Sum_probs=55.4

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|++..  .++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~   64 (232)
T PRK10771          2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT   64 (232)
T ss_pred             eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecC
Confidence            45667777776543  3899999999999999999999999999999999999999999998764

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=2.7e-19  Score=121.49  Aligned_cols=65  Identities=18%  Similarity=0.287  Sum_probs=59.2

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeeccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSI   72 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i   72 (80)
                      .+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++
T Consensus        16 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~   85 (265)
T PRK14252         16 KSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV   85 (265)
T ss_pred             eEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence            56778889999888999999999999999999999999999999999999875     789999988654

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.74  E-value=3.9e-19  Score=117.21  Aligned_cols=62  Identities=27%  Similarity=0.498  Sum_probs=55.1

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++.|+.  .++++||++++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus         2 ~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   63 (213)
T TIGR01277         2 ALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHT   63 (213)
T ss_pred             eEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcc
Confidence            45666777763  568999999999999999999999999999999999999999999998764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.74  E-value=2.5e-19  Score=122.18  Aligned_cols=66  Identities=18%  Similarity=0.295  Sum_probs=59.9

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++.
T Consensus        25 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~   95 (272)
T PRK14236         25 ALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY   95 (272)
T ss_pred             EEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence            46678888888888899999999999999999999999999999999999873     7999999998764

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=3.6e-19  Score=120.83  Aligned_cols=64  Identities=20%  Similarity=0.308  Sum_probs=58.3

Q ss_pred             hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      -+.+++.++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus         8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G   71 (257)
T PRK14246          8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG   71 (257)
T ss_pred             hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcC
Confidence            3457778889999999999999999999999999999999999999999999999997777665

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=2.8e-19  Score=123.01  Aligned_cols=65  Identities=18%  Similarity=0.221  Sum_probs=58.5

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++.+++++||+|++||+++|+|+||||||||+++|+|+.+     |++|+|.++|+++.
T Consensus        40 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~  109 (286)
T PRK14275         40 VVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY  109 (286)
T ss_pred             EEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence            567788888887789999999999999999999999999999999999864     48999999997753

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.73  E-value=3.1e-19  Score=134.31  Aligned_cols=67  Identities=22%  Similarity=0.411  Sum_probs=61.8

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|+ ++++|+++||+|++|+.++|+|+||||||||+++|+|+++|++|+|+++|.++.+
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~  540 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKD  540 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHH
Confidence            477888999986 4689999999999999999999999999999999999999999999999988653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=3.6e-19  Score=121.77  Aligned_cols=66  Identities=14%  Similarity=0.205  Sum_probs=59.2

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|+++.
T Consensus        20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~   90 (274)
T PRK14265         20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY   90 (274)
T ss_pred             eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence            46677888888888899999999999999999999999999999999999763     5899999998763

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=2.8e-19  Score=120.35  Aligned_cols=64  Identities=16%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      ++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+     |++|+|.++|+++.
T Consensus         7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   75 (251)
T PRK14244          7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY   75 (251)
T ss_pred             EeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehH
Confidence            35566777877889999999999999999999999999999999999976     46999999997764

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.73  E-value=4.1e-19  Score=124.18  Aligned_cols=63  Identities=25%  Similarity=0.445  Sum_probs=59.0

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      .+++.+.++.+++..+++++|++|+.||.++++|||||||||+|++|+|+..|+.|.|.++|+
T Consensus         2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~   64 (345)
T COG1118           2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGR   64 (345)
T ss_pred             ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCE
Confidence            345667788899999999999999999999999999999999999999999999999999998

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=2.9e-19  Score=120.21  Aligned_cols=66  Identities=21%  Similarity=0.364  Sum_probs=57.7

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece---eec--CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA---IKP--TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl---~~~--~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++.+++++||++++||+++|+|+||||||||+++|+|+   .+|  ++|+|.++|+++.
T Consensus         3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~   73 (250)
T PRK14245          3 KIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY   73 (250)
T ss_pred             EEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecc
Confidence            34567778888888899999999999999999999999999999999997   344  4899999998764

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=3e-19  Score=120.12  Aligned_cols=66  Identities=24%  Similarity=0.365  Sum_probs=58.7

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee--c---CCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--P---TSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~--~---~~G~i~~~~~~i~   73 (80)
                      .+++.++++.|+++++++++||++++||+++|+|+||||||||+++|+|+.+  |   ++|+|+++|+++.
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~   75 (252)
T PRK14255          5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY   75 (252)
T ss_pred             eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcc
Confidence            3567778888888889999999999999999999999999999999999865  4   5899999998763

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.73  E-value=3.6e-19  Score=133.91  Aligned_cols=67  Identities=27%  Similarity=0.429  Sum_probs=61.7

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++  +++|+++||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus       477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~  545 (710)
T TIGR03796       477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREE  545 (710)
T ss_pred             eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHH
Confidence            4778889998864  679999999999999999999999999999999999999999999999988753

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.73  E-value=3.3e-19  Score=125.01  Aligned_cols=65  Identities=26%  Similarity=0.422  Sum_probs=56.7

Q ss_pred             hccccccCCCC----------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD----------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~----------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|.          ...+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus         6 l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~   80 (327)
T PRK11308          6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL   80 (327)
T ss_pred             EEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcC
Confidence            44555565553          247999999999999999999999999999999999999999999999998764

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.73  E-value=3.2e-19  Score=124.94  Aligned_cols=65  Identities=22%  Similarity=0.398  Sum_probs=56.4

Q ss_pred             hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceee----cCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK----PTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~----~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+.    ..+|+++||+|++||+++|+|+||||||||+++|+|+++    |++|+|.++|+++.
T Consensus         4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~   76 (326)
T PRK11022          4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQ   76 (326)
T ss_pred             EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECC
Confidence            455566666654    469999999999999999999999999999999999987    37899999998764

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=3.3e-19  Score=124.92  Aligned_cols=65  Identities=26%  Similarity=0.351  Sum_probs=55.9

Q ss_pred             hccccccCCC----CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee----cCCCceeeeecccc
Q psy7220           9 VDSHLETFPY----DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK----PTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~----~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~----~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|    +...+++++||+|++||+++|+|+||||||||+++|+|+.+    |++|+|+++|+++.
T Consensus         4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~   76 (330)
T PRK15093          4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL   76 (330)
T ss_pred             EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC
Confidence            3455566666    34579999999999999999999999999999999999986    58899999998764

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.73  E-value=3.8e-19  Score=131.00  Aligned_cols=67  Identities=30%  Similarity=0.516  Sum_probs=61.6

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++  +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++.+
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~  409 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD  409 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhh
Confidence            4788888998864  679999999999999999999999999999999999999999999999988653

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.73  E-value=2.7e-19  Score=116.61  Aligned_cols=59  Identities=29%  Similarity=0.330  Sum_probs=53.8

Q ss_pred             cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ++++.|+++.++++. |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus         5 ~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   63 (177)
T cd03222           5 DCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP   63 (177)
T ss_pred             CeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE
Confidence            457788888899884 99999999999999999999999999999999999999998654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=4.2e-19  Score=120.73  Aligned_cols=65  Identities=22%  Similarity=0.369  Sum_probs=58.1

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      +..+..++.|+++.+++++||++++||+++|+|+||||||||+++|+|+++|     ++|+|.++|+++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~   78 (261)
T PRK14263          9 MDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVY   78 (261)
T ss_pred             EEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecc
Confidence            3445567778888999999999999999999999999999999999999986     7999999998764

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.73  E-value=5.2e-19  Score=117.52  Aligned_cols=63  Identities=24%  Similarity=0.372  Sum_probs=55.9

Q ss_pred             ccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceee---cCCCceeeeeccc
Q psy7220          10 DSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSI   72 (80)
Q Consensus        10 ~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~---~~~G~i~~~~~~i   72 (80)
                      ...+++++|.+    +++++++||++++||+++|+||||||||||+++|+|+++   |++|+|.++|+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~   74 (226)
T cd03234           5 PWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR   74 (226)
T ss_pred             eeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence            35566666643    589999999999999999999999999999999999999   8999999999765

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.73  E-value=4.3e-19  Score=119.28  Aligned_cols=65  Identities=17%  Similarity=0.322  Sum_probs=57.2

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++++++++||+|++||+++|+|+||||||||+++|+|+.+     |++|+|.++|+++.
T Consensus         4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~   73 (250)
T PRK14266          4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY   73 (250)
T ss_pred             EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcc
Confidence            445666777777889999999999999999999999999999999999864     38899999998764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.73  E-value=5.5e-19  Score=128.33  Aligned_cols=65  Identities=25%  Similarity=0.464  Sum_probs=58.8

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-CCCceeeeeccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI   72 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~~~~~i   72 (80)
                      .+++.++++.|+++.+++++||++++||+++|+||||||||||+++|+|+.++ ++|+|+++|+++
T Consensus       260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~  325 (490)
T PRK10938        260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRR  325 (490)
T ss_pred             eEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccC
Confidence            36677888888888899999999999999999999999999999999998775 699999999764

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.73  E-value=5.8e-19  Score=111.62  Aligned_cols=62  Identities=32%  Similarity=0.602  Sum_probs=56.4

Q ss_pred             ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++.|.++.++++++|++++|++++|+|+||||||||+++|+|+++|+.|++++++.++.
T Consensus         3 ~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~   64 (157)
T cd00267           3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA   64 (157)
T ss_pred             EEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc
Confidence            45566777778999999999999999999999999999999999999999999999997654

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.72  E-value=6.4e-19  Score=119.67  Aligned_cols=52  Identities=42%  Similarity=0.660  Sum_probs=49.2

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      ....+|+|+||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|+
T Consensus        38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~   89 (249)
T COG1134          38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK   89 (249)
T ss_pred             ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce
Confidence            3467999999999999999999999999999999999999999999999985

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.72  E-value=5.7e-19  Score=122.46  Aligned_cols=65  Identities=18%  Similarity=0.266  Sum_probs=59.6

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+.+     |++|+|+++|.++.
T Consensus        46 l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~  115 (305)
T PRK14264         46 LSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY  115 (305)
T ss_pred             EEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            667888888888899999999999999999999999999999999999986     68999999997764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.72  E-value=5.3e-19  Score=132.25  Aligned_cols=62  Identities=24%  Similarity=0.415  Sum_probs=57.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      +++.++++.|+++++|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++.
T Consensus         4 l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~   65 (635)
T PRK11147          4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD   65 (635)
T ss_pred             EEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC
Confidence            55667788888889999999999999999999999999999999999999999999998763

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.72  E-value=6.9e-19  Score=128.57  Aligned_cols=67  Identities=33%  Similarity=0.530  Sum_probs=61.6

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++  +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~  388 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAD  388 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhh
Confidence            5778888999865  469999999999999999999999999999999999999999999999987653

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.72  E-value=4.5e-19  Score=119.31  Aligned_cols=69  Identities=20%  Similarity=0.361  Sum_probs=62.8

Q ss_pred             hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC-----Cceeeeecccccc
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-----GNAYVMNHSIRDS   75 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~-----G~i~~~~~~i~~~   75 (80)
                      ..++.+++.++|+++.+|++||++|+++++++|+||||||||||||+++++....+     |+|.++|+++.+.
T Consensus         6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~   79 (253)
T COG1117           6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP   79 (253)
T ss_pred             ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence            45677889999999999999999999999999999999999999999999987654     9999999998763

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.72  E-value=7.2e-19  Score=129.57  Aligned_cols=68  Identities=34%  Similarity=0.594  Sum_probs=63.6

Q ss_pred             hhhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           7 QTVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         7 ~~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+++.+++++.|+ ++++++++||++++||.++|+|||||||||++++|.++++|++|+|.++|+++.+
T Consensus       327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~  395 (567)
T COG1132         327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRD  395 (567)
T ss_pred             CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhh
Confidence            3578899999998 6899999999999999999999999999999999999999999999999988764

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.72  E-value=7.1e-19  Score=130.02  Aligned_cols=67  Identities=22%  Similarity=0.365  Sum_probs=61.2

Q ss_pred             hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.+++++.|++ +++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~  407 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSS  407 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhh
Confidence            4777888888854 679999999999999999999999999999999999999999999999988753

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.72  E-value=6.4e-19  Score=130.05  Aligned_cols=62  Identities=29%  Similarity=0.372  Sum_probs=57.1

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .++++++++.|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus         6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~   68 (556)
T PRK11819          6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP   68 (556)
T ss_pred             EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence            466777888887 78899999999999999999999999999999999999999999999864

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.72  E-value=9.6e-19  Score=118.46  Aligned_cols=66  Identities=33%  Similarity=0.587  Sum_probs=59.7

Q ss_pred             hhccccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++..++++.|.+. .+++++||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.++.
T Consensus         3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~   69 (235)
T COG1122           3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS   69 (235)
T ss_pred             eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeecc
Confidence            34567778888665 9999999999999999999999999999999999999999999999998754

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.72  E-value=1.2e-18  Score=127.26  Aligned_cols=65  Identities=28%  Similarity=0.428  Sum_probs=58.0

Q ss_pred             hccccccCCCC---CccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-cCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD---TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~---~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-~~~G~i~~~~~~i~   73 (80)
                      ++..++++.|+   ++++++++||+|++||+++|+|+||||||||+++|+|+.+ |++|+|+++|+++.
T Consensus       260 l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~  328 (506)
T PRK13549        260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVK  328 (506)
T ss_pred             EEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECC
Confidence            56778888883   4579999999999999999999999999999999999998 59999999987653

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.72  E-value=1.3e-18  Score=127.03  Aligned_cols=63  Identities=32%  Similarity=0.429  Sum_probs=56.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+  .+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus       266 l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~  328 (510)
T PRK09700        266 FEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS  328 (510)
T ss_pred             EEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECC
Confidence            56667776653  4899999999999999999999999999999999999999999999997653

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.72  E-value=7e-19  Score=129.37  Aligned_cols=67  Identities=33%  Similarity=0.503  Sum_probs=61.4

Q ss_pred             hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++ .++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~  389 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA  389 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence            5778888998864 569999999999999999999999999999999999999999999999988653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.72  E-value=1.2e-18  Score=126.82  Aligned_cols=65  Identities=29%  Similarity=0.478  Sum_probs=57.9

Q ss_pred             hccccccCCC---CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-CCCceeeeecccc
Q psy7220           9 VDSHLETFPY---DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~---~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~~~~~i~   73 (80)
                      +++.++++.|   +++.+++++||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.
T Consensus       258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~  326 (500)
T TIGR02633       258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVD  326 (500)
T ss_pred             EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECC
Confidence            6677788877   346799999999999999999999999999999999999985 8999999987663

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.71  E-value=9.1e-19  Score=129.57  Aligned_cols=67  Identities=30%  Similarity=0.543  Sum_probs=61.3

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++  +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+
T Consensus       338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~  406 (574)
T PRK11160        338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD  406 (574)
T ss_pred             eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence            4778888998854  579999999999999999999999999999999999999999999999987654

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.71  E-value=9.5e-19  Score=114.79  Aligned_cols=63  Identities=27%  Similarity=0.439  Sum_probs=56.9

Q ss_pred             ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ..+.+..++.++|+++||.+.+||+++|+||||||||||+|+++.+++|++|.++|.|+++..
T Consensus         7 kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~   69 (223)
T COG4619           7 KQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVST   69 (223)
T ss_pred             HHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccc
Confidence            334455577899999999999999999999999999999999999999999999999998754

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.71  E-value=8.6e-19  Score=132.39  Aligned_cols=67  Identities=24%  Similarity=0.476  Sum_probs=61.5

Q ss_pred             hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++   +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++.+
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~  547 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ  547 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence            4788889999864   479999999999999999999999999999999999999999999999988653

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.71  E-value=1e-18  Score=115.11  Aligned_cols=58  Identities=24%  Similarity=0.374  Sum_probs=53.5

Q ss_pred             cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++.|+++.+  ++||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   62 (214)
T cd03297           5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLF   62 (214)
T ss_pred             eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecc
Confidence            56888988766  99999999 999999999999999999999999999999999997653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=9.3e-19  Score=128.34  Aligned_cols=63  Identities=27%  Similarity=0.481  Sum_probs=58.4

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      .+++.++++.|+++.+++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++++
T Consensus       319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~  381 (530)
T PRK15064        319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN  381 (530)
T ss_pred             eEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc
Confidence            467788888898888999999999999999999999999999999999999999999998763

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.71  E-value=9.3e-19  Score=120.39  Aligned_cols=65  Identities=26%  Similarity=0.407  Sum_probs=58.3

Q ss_pred             hhccccccCCC--CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~--~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++.++++.|  +...+|+++||+|++||+++|+|+||||||||+++|+|+++ ++|+|+++|.++.
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~   68 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWN   68 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhh
Confidence            35677888888  45679999999999999999999999999999999999997 7899999998764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.71  E-value=1.2e-18  Score=128.46  Aligned_cols=62  Identities=29%  Similarity=0.374  Sum_probs=56.7

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .+++.++++.|+ ++++|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus         4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~   66 (552)
T TIGR03719         4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP   66 (552)
T ss_pred             EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence            356677888887 67899999999999999999999999999999999999999999999864

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.71  E-value=1.1e-18  Score=131.11  Aligned_cols=67  Identities=30%  Similarity=0.563  Sum_probs=61.3

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++  +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus       463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~  531 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ  531 (694)
T ss_pred             eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence            4778888998863  579999999999999999999999999999999999999999999999987653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.71  E-value=9.4e-19  Score=122.85  Aligned_cols=66  Identities=27%  Similarity=0.445  Sum_probs=57.8

Q ss_pred             hhccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC---CCceeeeecccc
Q psy7220           8 TVDSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i~   73 (80)
                      .++++++++.|.    ...+++++||+|++||+++|+|+||||||||+++|+|+++|+   +|+|+++|+++.
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~   84 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREIL   84 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECC
Confidence            356667777663    357999999999999999999999999999999999999985   999999998764

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.71  E-value=1.6e-18  Score=127.93  Aligned_cols=66  Identities=26%  Similarity=0.445  Sum_probs=59.0

Q ss_pred             hhccccccC-CCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETF-PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~-~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.+++++ +|+++++|+++||+|++|++++|+|+||||||||+++|+|++ |++|+|.++|.++.+
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~  415 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRE  415 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEeccc
Confidence            477778875 456678999999999999999999999999999999999999 999999999987653

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.71  E-value=1e-18  Score=118.95  Aligned_cols=64  Identities=30%  Similarity=0.537  Sum_probs=60.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +++.++++.|+++++|+++|++|++||.++|+||||||||||+++++|.++|++|.+.+.|+..
T Consensus        32 i~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~   95 (257)
T COG1119          32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRF   95 (257)
T ss_pred             EEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeec
Confidence            5677889999999999999999999999999999999999999999999999999999988764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.71  E-value=7.5e-19  Score=108.18  Aligned_cols=51  Identities=33%  Similarity=0.638  Sum_probs=48.4

Q ss_pred             cceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      |+++||++++|++++|+|+||||||||+++|+|+.+|++|+|.+++.++..
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~   51 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD   51 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc
Confidence            689999999999999999999999999999999999999999999987754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.71  E-value=1.2e-18  Score=127.80  Aligned_cols=65  Identities=22%  Similarity=0.366  Sum_probs=57.7

Q ss_pred             hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~   73 (80)
                      +++.++++.|++    +++++++||++++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++.
T Consensus         6 l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   79 (529)
T PRK15134          6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL   79 (529)
T ss_pred             EEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence            566777777753    5799999999999999999999999999999999999986     6999999998763

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.71  E-value=1.3e-18  Score=129.97  Aligned_cols=65  Identities=25%  Similarity=0.362  Sum_probs=58.3

Q ss_pred             hccccccCCCC-----------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD-----------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~-----------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.++++.|+           ...+++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|+++.
T Consensus       314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~  389 (623)
T PRK10261        314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID  389 (623)
T ss_pred             EEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence            56777787774           146999999999999999999999999999999999999999999999998663

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.70  E-value=1.7e-18  Score=118.88  Aligned_cols=54  Identities=35%  Similarity=0.598  Sum_probs=51.1

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ..++++|||+|++||++||+|+|||||||+-|+|.|+.+|++|+|+++|+++..
T Consensus        26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~   79 (268)
T COG4608          26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK   79 (268)
T ss_pred             eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh
Confidence            379999999999999999999999999999999999999999999999988643

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.70  E-value=2e-18  Score=127.65  Aligned_cols=67  Identities=30%  Similarity=0.557  Sum_probs=61.2

Q ss_pred             hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++..++++.|++ +++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~  401 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT  401 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh
Confidence            4777888888864 579999999999999999999999999999999999999999999999987653

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.70  E-value=2e-18  Score=126.29  Aligned_cols=59  Identities=36%  Similarity=0.570  Sum_probs=54.8

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeee
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVM   68 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~   68 (80)
                      +++++++.|+++++++++||++++|++++|+||||||||||+++|+|+.  +|++|+|+++
T Consensus         2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~   62 (520)
T TIGR03269         2 EVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH   62 (520)
T ss_pred             EEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence            4667888888888999999999999999999999999999999999997  6999999997

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.70  E-value=2.1e-18  Score=129.09  Aligned_cols=61  Identities=31%  Similarity=0.469  Sum_probs=56.9

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      .+++.++++.|+++++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++
T Consensus       319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~  379 (635)
T PRK11147        319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG  379 (635)
T ss_pred             eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence            3677888888988889999999999999999999999999999999999999999999983

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.70  E-value=2.1e-18  Score=121.86  Aligned_cols=59  Identities=17%  Similarity=0.302  Sum_probs=53.5

Q ss_pred             cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++.|++..+  ++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~   62 (354)
T TIGR02142         4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLF   62 (354)
T ss_pred             EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence            56777877654  999999999999999999999999999999999999999999998764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.70  E-value=2.2e-18  Score=121.70  Aligned_cols=59  Identities=15%  Similarity=0.230  Sum_probs=53.0

Q ss_pred             cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++.|+++.+  ++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         5 ~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~   63 (352)
T PRK11144          5 NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLF   63 (352)
T ss_pred             EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence            56777876543  899999999999999999999999999999999999999999997754

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.70  E-value=2.2e-18  Score=127.08  Aligned_cols=61  Identities=31%  Similarity=0.569  Sum_probs=56.6

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      +++.++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|++++
T Consensus       323 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~  383 (552)
T TIGR03719       323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE  383 (552)
T ss_pred             EEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC
Confidence            6677788888888899999999999999999999999999999999999999999999853

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.69  E-value=2.5e-18  Score=127.05  Aligned_cols=66  Identities=21%  Similarity=0.533  Sum_probs=59.7

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.+++++.|+.  +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~  380 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLT  380 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHh
Confidence            4667777887753  57999999999999999999999999999999999999999999999998764

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.69  E-value=2.4e-18  Score=126.37  Aligned_cols=67  Identities=27%  Similarity=0.475  Sum_probs=61.0

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++  +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+
T Consensus       316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~  384 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ  384 (544)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence            4777888998853  579999999999999999999999999999999999999999999999987643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.69  E-value=2.4e-18  Score=129.06  Aligned_cols=61  Identities=31%  Similarity=0.510  Sum_probs=57.1

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      .+++.++++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++
T Consensus       312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~  372 (638)
T PRK10636        312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA  372 (638)
T ss_pred             eEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence            3667788888988899999999999999999999999999999999999999999999986

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.69  E-value=2.3e-18  Score=126.39  Aligned_cols=66  Identities=30%  Similarity=0.538  Sum_probs=60.7

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++.++++++|.+  +++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~  397 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLA  397 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHH
Confidence            4778888888854  57999999999999999999999999999999999999999999999998765

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.69  E-value=2.3e-18  Score=127.15  Aligned_cols=62  Identities=31%  Similarity=0.584  Sum_probs=57.4

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .+++.++++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus       324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~  385 (556)
T PRK11819        324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE  385 (556)
T ss_pred             EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence            36777888888888899999999999999999999999999999999999999999999853

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.69  E-value=2.9e-18  Score=127.20  Aligned_cols=67  Identities=28%  Similarity=0.460  Sum_probs=61.1

Q ss_pred             hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++ +++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+
T Consensus       334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~  401 (585)
T TIGR01192       334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT  401 (585)
T ss_pred             eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence            4777888998865 579999999999999999999999999999999999999999999999987643

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.69  E-value=3.1e-18  Score=114.39  Aligned_cols=50  Identities=28%  Similarity=0.616  Sum_probs=47.4

Q ss_pred             cceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   50 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQIT   50 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence            57999999999999999999999999999999999999999999998764

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.69  E-value=2.6e-18  Score=126.36  Aligned_cols=66  Identities=30%  Similarity=0.558  Sum_probs=60.0

Q ss_pred             hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++.+++++.|+.   +.+|+++||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~  405 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLR  405 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHH
Confidence            3677788888853   56999999999999999999999999999999999999999999999998765

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.69  E-value=2.7e-18  Score=126.69  Aligned_cols=67  Identities=19%  Similarity=0.338  Sum_probs=60.9

Q ss_pred             hhccccccCCCCC-----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT-----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~-----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.+++++.|++     +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~  408 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA  408 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence            4777888888864     259999999999999999999999999999999999999999999999988754

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.69  E-value=4.3e-18  Score=112.86  Aligned_cols=50  Identities=28%  Similarity=0.483  Sum_probs=46.3

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee-eeecc
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-VMNHS   71 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~-~~~~~   71 (80)
                      ++++++||+|++|++++|+||||||||||+++|+|+.+|++|+|. +++..
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~   51 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA   51 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce
Confidence            478999999999999999999999999999999999999999997 66643

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.69  E-value=3.9e-18  Score=113.68  Aligned_cols=51  Identities=29%  Similarity=0.550  Sum_probs=48.1

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeec----CCCceeeeecccc
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIR   73 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~----~~G~i~~~~~~i~   73 (80)
                      +++++||++++|++++|+||||||||||+++|+|+.+|    ++|+|+++|+++.
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~   55 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL   55 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEech
Confidence            57899999999999999999999999999999999998    8999999998764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.69  E-value=3.8e-18  Score=124.77  Aligned_cols=61  Identities=38%  Similarity=0.590  Sum_probs=55.1

Q ss_pred             hhccccccCCCC-----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220           8 TVDSHLETFPYD-----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus         8 ~~~~~~~~~~~~-----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      .++++++++.|+     .+++++++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~  344 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVR  344 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEe
Confidence            366777788774     2579999999999999999999999999999999999999999999996

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.69  E-value=5.6e-18  Score=123.19  Aligned_cols=63  Identities=25%  Similarity=0.443  Sum_probs=55.8

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.+  +++++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++.
T Consensus       251 i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~  313 (491)
T PRK10982        251 LEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN  313 (491)
T ss_pred             EEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECC
Confidence            4556666653  46999999999999999999999999999999999999999999999987664

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.68  E-value=3.6e-18  Score=114.23  Aligned_cols=62  Identities=29%  Similarity=0.576  Sum_probs=55.4

Q ss_pred             ccccCCCCCcc--ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          12 HLETFPYDTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        12 ~~~~~~~~~~~--vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++.+|.+++  +++++|++|.+||+++++||||||||||+++++|+..|..|+|.++++++.
T Consensus         7 ~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~   70 (259)
T COG4525           7 SHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE   70 (259)
T ss_pred             hheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc
Confidence            34455666655  999999999999999999999999999999999999999999999998764

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.68  E-value=3.8e-18  Score=128.29  Aligned_cols=67  Identities=22%  Similarity=0.420  Sum_probs=61.0

Q ss_pred             hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|+  ++++++++||++++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus       455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~  523 (694)
T TIGR01846       455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI  523 (694)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhh
Confidence            477788899885  3569999999999999999999999999999999999999999999999988653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.68  E-value=3.6e-18  Score=122.19  Aligned_cols=59  Identities=22%  Similarity=0.302  Sum_probs=55.0

Q ss_pred             ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      ..+...|+...+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+
T Consensus        28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~   86 (382)
T TIGR03415        28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDG   86 (382)
T ss_pred             HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCE
Confidence            44566788889999999999999999999999999999999999999999999999985

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.68  E-value=3.7e-18  Score=125.14  Aligned_cols=64  Identities=28%  Similarity=0.455  Sum_probs=56.9

Q ss_pred             hccccccCCCC-----------CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD-----------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~-----------~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+           ++.+|+++||+|++||+++|+||||||||||+++|+|+.+ ++|+|+++|+++.
T Consensus       276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~  350 (529)
T PRK15134        276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH  350 (529)
T ss_pred             ccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence            66777787774           3579999999999999999999999999999999999985 8999999997653

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.68  E-value=3.6e-18  Score=127.68  Aligned_cols=64  Identities=22%  Similarity=0.326  Sum_probs=56.8

Q ss_pred             hhccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220           8 TVDSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus         8 ~~~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      .++++++++.|+    ..++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~   79 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKML   79 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEE
Confidence            356777777775    2479999999999999999999999999999999999999999999998753

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.68  E-value=8.1e-18  Score=116.50  Aligned_cols=54  Identities=50%  Similarity=0.706  Sum_probs=50.4

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      -++++|+||+|++|++++++|+|||||||++|+|+|++.|++|.|.++|....+
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~   90 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR   90 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch
Confidence            469999999999999999999999999999999999999999999999976543

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.68  E-value=5e-18  Score=117.11  Aligned_cols=60  Identities=20%  Similarity=0.411  Sum_probs=53.3

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .+++.++++.  ++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus        39 ~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g   98 (282)
T cd03291          39 NLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG   98 (282)
T ss_pred             eEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence            4556666653  46799999999999999999999999999999999999999999999876

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>KOG0058|consensus

Probab=99.68  E-value=5.5e-18  Score=127.69  Aligned_cols=67  Identities=31%  Similarity=0.541  Sum_probs=62.4

Q ss_pred             hhccccccCCCCCc---cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~---~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.++++|.|..+   ++|+|+||+|++||++++|||||+||||..++|-+++.|++|+|.++|.++++
T Consensus       465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~  534 (716)
T KOG0058|consen  465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD  534 (716)
T ss_pred             eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhh
Confidence            67888899999654   69999999999999999999999999999999999999999999999999865

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.67  E-value=3.4e-17  Score=109.41  Aligned_cols=67  Identities=30%  Similarity=0.447  Sum_probs=61.5

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee-ccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN-HSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~-~~i~~   74 (80)
                      .+++.+++++|++-.+++++||++.+||.-+|+|||||||||++.+|+|--+|+.|+++++| .++..
T Consensus         5 iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~   72 (249)
T COG4674           5 ILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTK   72 (249)
T ss_pred             eEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhcc
Confidence            45677889999999999999999999999999999999999999999999999999999998 55543

>KOG0057|consensus

Probab=99.67  E-value=5.7e-18  Score=124.94  Aligned_cols=66  Identities=26%  Similarity=0.517  Sum_probs=61.2

Q ss_pred             hhccccccCCCCCcc-ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKP-AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~-vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++..++.+.|++++ +|+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|+++|+++++
T Consensus       351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~  417 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKE  417 (591)
T ss_pred             cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhh
Confidence            467788888998876 9999999999999999999999999999999999999 99999999999865

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.67  E-value=8.6e-18  Score=113.38  Aligned_cols=50  Identities=30%  Similarity=0.480  Sum_probs=46.8

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +|+++||++++|++++|+|+||||||||+++|+|+.+ .+|+|.++|+++.
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~   60 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLE   60 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecC
Confidence            8999999999999999999999999999999999985 4899999998764

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=7.6e-18  Score=118.27  Aligned_cols=66  Identities=21%  Similarity=0.390  Sum_probs=58.0

Q ss_pred             hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-----cCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-----~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|.  .+++|+++||+|++||+++|+|+||||||||+++|+|+.+     |++|+|.++|+++.
T Consensus        80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~  152 (329)
T PRK14257         80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR  152 (329)
T ss_pred             eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            346677788774  3579999999999999999999999999999999999986     56899999999875

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.66  E-value=1e-17  Score=124.04  Aligned_cols=64  Identities=31%  Similarity=0.474  Sum_probs=56.2

Q ss_pred             hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220           8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus         8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      .+++.++++.|++   +++|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.+
T Consensus        21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~   87 (549)
T PRK13545         21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA   87 (549)
T ss_pred             eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe
Confidence            3455666666665   469999999999999999999999999999999999999999999998864

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.66  E-value=8.8e-18  Score=114.38  Aligned_cols=53  Identities=30%  Similarity=0.563  Sum_probs=48.2

Q ss_pred             cccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220          13 LETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY   66 (80)
Q Consensus        13 ~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~   66 (80)
                      +++++|+.. .+++++|+ +++|++++|+||||||||||+++|+|+++|++|+|.
T Consensus         5 ~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~   58 (255)
T cd03236           5 EPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD   58 (255)
T ss_pred             CcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence            457778764 59999995 999999999999999999999999999999999996

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.66  E-value=1.4e-17  Score=113.77  Aligned_cols=52  Identities=33%  Similarity=0.553  Sum_probs=48.8

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      ..+++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus        35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~   86 (264)
T PRK13546         35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE   86 (264)
T ss_pred             CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE
Confidence            3457999999999999999999999999999999999999999999999885

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.2e-17  Score=113.05  Aligned_cols=66  Identities=21%  Similarity=0.325  Sum_probs=57.7

Q ss_pred             hccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeecee--ecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~G~i~~~~~~i~~   74 (80)
                      ++++++.+...+ +++|+++||+|++||+.+|+||||||||||..+|+|..  ++++|+|.++|+++.+
T Consensus         4 L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~   72 (251)
T COG0396           4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE   72 (251)
T ss_pred             eEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc
Confidence            344555666666 59999999999999999999999999999999999986  6789999999999864

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.65  E-value=1.3e-17  Score=112.55  Aligned_cols=57  Identities=32%  Similarity=0.564  Sum_probs=53.6

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccc
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS   75 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~   75 (80)
                      ..+++|+++|++|++|+++.|+|.||||||||+++++|.+.|++|.|.++|.++.+.
T Consensus        17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~   73 (263)
T COG1101          17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK   73 (263)
T ss_pred             hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccC
Confidence            357899999999999999999999999999999999999999999999999988754

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.65  E-value=1.3e-17  Score=136.66  Aligned_cols=66  Identities=55%  Similarity=0.787  Sum_probs=60.6

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|++  +.+++++||+|++||++||+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus      1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~ 2004 (2272)
T TIGR01257      1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL 2004 (2272)
T ss_pred             eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECc
Confidence            3667788888875  57999999999999999999999999999999999999999999999998764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.65  E-value=2.4e-17  Score=120.21  Aligned_cols=52  Identities=40%  Similarity=0.657  Sum_probs=49.2

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~  318 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPID  318 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECC
Confidence            5899999999999999999999999999999999999999999999987653

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.9e-17  Score=121.97  Aligned_cols=67  Identities=25%  Similarity=0.499  Sum_probs=61.7

Q ss_pred             hhccccccCCCCCc--cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~--~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.++++|.|.+.  ++|+++||++++||.++|+|++||||||+++.+.|.++|++|+|.++|.++..
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~  404 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS  404 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence            46888999998664  59999999999999999999999999999999999999999999999988754

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=2.4e-17  Score=121.93  Aligned_cols=64  Identities=31%  Similarity=0.556  Sum_probs=58.7

Q ss_pred             cccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          11 SHLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        11 ~~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ..++++.|++. ++++++||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+..+
T Consensus       323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~  387 (559)
T COG4988         323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRD  387 (559)
T ss_pred             ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccc
Confidence            34888888664 89999999999999999999999999999999999999999999999987654

>PLN03232 ABC transporter C family member; Provisional

Probab=99.64  E-value=2e-17  Score=132.70  Aligned_cols=67  Identities=21%  Similarity=0.380  Sum_probs=61.7

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.+++++.|..  +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++.+
T Consensus      1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred             cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhh
Confidence            4788899998853  579999999999999999999999999999999999999999999999988754

>PLN03130 ABC transporter C family member; Provisional

Probab=99.64  E-value=2.3e-17  Score=133.11  Aligned_cols=67  Identities=21%  Similarity=0.404  Sum_probs=61.6

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|..  .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+
T Consensus      1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISK 1305 (1622)
T ss_pred             cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEeccc
Confidence            4788889998854  479999999999999999999999999999999999999999999999998754

>PLN03211 ABC transporter G-25; Provisional

Probab=99.64  E-value=3.3e-17  Score=123.50  Aligned_cols=63  Identities=25%  Similarity=0.352  Sum_probs=56.5

Q ss_pred             cccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC--CCceeeeecccc
Q psy7220          11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT--SGNAYVMNHSIR   73 (80)
Q Consensus        11 ~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~--~G~i~~~~~~i~   73 (80)
                      ..++++.|+++.+|+++|+++++||+++|+||||||||||+++|+|..+|+  +|+|.++|+++.
T Consensus        71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~  135 (659)
T PLN03211         71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT  135 (659)
T ss_pred             cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc
Confidence            344667788889999999999999999999999999999999999998885  899999998753

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.64  E-value=3.6e-17  Score=119.32  Aligned_cols=52  Identities=42%  Similarity=0.702  Sum_probs=49.0

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus       266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~  317 (501)
T PRK10762        266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVV  317 (501)
T ss_pred             CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            4799999999999999999999999999999999999999999999997653

>PLN03073 ABC transporter F family; Provisional

Probab=99.64  E-value=3e-17  Score=124.72  Aligned_cols=62  Identities=24%  Similarity=0.534  Sum_probs=55.8

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .++..++++.|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|++++
T Consensus       508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~  570 (718)
T PLN03073        508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA  570 (718)
T ss_pred             eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC
Confidence            356778888885 45699999999999999999999999999999999999999999998764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.63  E-value=3e-17  Score=121.42  Aligned_cols=62  Identities=32%  Similarity=0.606  Sum_probs=57.5

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .+++.++++.|+++++++++||++.+|+.+||||+|||||||||++|+|...|++|+|.+..
T Consensus         3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~   64 (530)
T COG0488           3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK   64 (530)
T ss_pred             eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence            35567778899999999999999999999999999999999999999999999999998865

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.63  E-value=3.8e-17  Score=122.69  Aligned_cols=66  Identities=26%  Similarity=0.385  Sum_probs=58.3

Q ss_pred             hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|++    +.+++++||++++||+++|+|+||||||||+++|+|+++|++|++.++|+++..
T Consensus         5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~   74 (648)
T PRK10535          5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVAT   74 (648)
T ss_pred             EEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCc
Confidence            556666777742    469999999999999999999999999999999999999999999999987653

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.63  E-value=5.1e-17  Score=108.19  Aligned_cols=53  Identities=40%  Similarity=0.711  Sum_probs=50.1

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..+++.+||++++|+.++|+|.||||||||.++|+|+++|++|+|.+|++.+.
T Consensus        26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~   78 (267)
T COG4167          26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH   78 (267)
T ss_pred             hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccc
Confidence            35899999999999999999999999999999999999999999999998754

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.63  E-value=4.3e-17  Score=130.97  Aligned_cols=67  Identities=21%  Similarity=0.288  Sum_probs=61.9

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.+++++.|..  .++|+++||+|++||++||+|++|||||||+++|.|+++|++|+|.++|.++.+
T Consensus      1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~ 1352 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAK 1352 (1522)
T ss_pred             cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccc
Confidence            5788888998864  479999999999999999999999999999999999999999999999998764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=99.63  E-value=4e-17  Score=131.43  Aligned_cols=67  Identities=19%  Similarity=0.299  Sum_probs=61.5

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|.+  .++|+++||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++.+
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~ 1376 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGA 1376 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence            4778888998854  459999999999999999999999999999999999999999999999998764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.63  E-value=6.4e-17  Score=118.40  Aligned_cols=51  Identities=31%  Similarity=0.466  Sum_probs=48.5

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~  328 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEIN  328 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECC
Confidence            699999999999999999999999999999999999999999999987653

>PLN03073 ABC transporter F family; Provisional

Probab=99.63  E-value=5.1e-17  Score=123.49  Aligned_cols=66  Identities=18%  Similarity=0.320  Sum_probs=58.5

Q ss_pred             hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee---ecCCCceeeeecc
Q psy7220           6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI---KPTSGNAYVMNHS   71 (80)
Q Consensus         6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~---~~~~G~i~~~~~~   71 (80)
                      ..++++.++++.|+++++|+++||+|++|+++||+|+||||||||+++|+|..   .|+.|+|.+.++.
T Consensus       175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~  243 (718)
T PLN03073        175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE  243 (718)
T ss_pred             ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence            34678889999998889999999999999999999999999999999999854   5788999876664

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.63  E-value=2.9e-17  Score=134.66  Aligned_cols=66  Identities=35%  Similarity=0.494  Sum_probs=60.7

Q ss_pred             hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+  ++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|.++.
T Consensus       928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~  995 (2272)
T TIGR01257       928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE  995 (2272)
T ss_pred             eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECc
Confidence            467788888884  578999999999999999999999999999999999999999999999998774

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.63  E-value=6.6e-17  Score=116.79  Aligned_cols=69  Identities=30%  Similarity=0.470  Sum_probs=63.2

Q ss_pred             hhhhccccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           6 LQTVDSHLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+.++.+++.|.|... .-+..||++|++||++-|+|.||||||||++.|.|+++|++|+|++||.+++.
T Consensus       320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~  389 (546)
T COG4615         320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA  389 (546)
T ss_pred             ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence            4567888889988765 67899999999999999999999999999999999999999999999999865

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.62  E-value=4.3e-17  Score=130.74  Aligned_cols=66  Identities=24%  Similarity=0.545  Sum_probs=59.7

Q ss_pred             hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee-ecccc
Q psy7220           8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM-NHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~-~~~i~   73 (80)
                      +++.+++++.|+.   .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|+++ |.++.
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~  451 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLK  451 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchh
Confidence            5788899999974   369999999999999999999999999999999999999999999995 56653

>KOG0055|consensus

Probab=99.62  E-value=5.7e-17  Score=127.41  Aligned_cols=67  Identities=25%  Similarity=0.512  Sum_probs=62.6

Q ss_pred             hhccccccCCCCCc---cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~---~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.+++.|.|..+   ++|+++||.|++|++++|+|+|||||||++++|.+++.|++|+|+++|.++..
T Consensus       350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~  419 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRN  419 (1228)
T ss_pred             ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchh
Confidence            78888999999765   59999999999999999999999999999999999999999999999998764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.62  E-value=7.8e-17  Score=119.11  Aligned_cols=51  Identities=35%  Similarity=0.659  Sum_probs=49.1

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      ..+++++||++.+||++||+|+|||||||+.|+|+|+.+|+.|+|.++|.+
T Consensus       304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~  354 (539)
T COG1123         304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD  354 (539)
T ss_pred             eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence            468999999999999999999999999999999999999999999999977

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.60  E-value=9.3e-17  Score=128.83  Aligned_cols=53  Identities=19%  Similarity=0.352  Sum_probs=49.1

Q ss_pred             hhccccccCCCC---CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec
Q psy7220           8 TVDSHLETFPYD---TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus         8 ~~~~~~~~~~~~---~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      .++.++++|.|.   +.++|+++||+|++|++++|+|||||||||++++|.|+++|
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            477889999995   34799999999999999999999999999999999999998

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.60  E-value=1.4e-16  Score=105.80  Aligned_cols=67  Identities=21%  Similarity=0.365  Sum_probs=62.5

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++..++.++|+...+|+++|++.++|+.+.|+|.+|||||||++|++=+..|+.|.|.++|+.+.-
T Consensus         6 ~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~   72 (256)
T COG4598           6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRL   72 (256)
T ss_pred             ceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEe
Confidence            4667788899999999999999999999999999999999999999999999999999999988753

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.59  E-value=2.3e-16  Score=106.85  Aligned_cols=52  Identities=37%  Similarity=0.646  Sum_probs=45.6

Q ss_pred             ccccceeeeeec-----cceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          21 KPAVNQISFGVG-----RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        21 ~~vl~~isl~i~-----~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ...+++++|+++     +||+++|+||||||||||+++|+|+.+|++|+|.+++..+
T Consensus         7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i   63 (246)
T cd03237           7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV   63 (246)
T ss_pred             ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceE
Confidence            346777777776     7999999999999999999999999999999999988543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.59  E-value=2.5e-16  Score=104.35  Aligned_cols=63  Identities=27%  Similarity=0.406  Sum_probs=53.0

Q ss_pred             cccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccc
Q psy7220          11 SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS   75 (80)
Q Consensus        11 ~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~   75 (80)
                      +.++.+.|+..  --.++++|+.||+++|+||||||||||+++++|+..|.+|+|.++|++....
T Consensus         4 L~~V~~~y~~~--~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~   66 (231)
T COG3840           4 LDDVRFSYGHL--PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS   66 (231)
T ss_pred             ccceEEeeCcc--eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC
Confidence            34455666543  3367888999999999999999999999999999999999999999886543

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.59  E-value=2.1e-16  Score=118.95  Aligned_cols=62  Identities=19%  Similarity=0.239  Sum_probs=55.9

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .++.+++++.|. ++++++++||++++||+++|+||||||||||+++|+|+++|++|++.+++
T Consensus       451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~  513 (659)
T TIGR00954       451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA  513 (659)
T ss_pred             eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC
Confidence            367788888874 55799999999999999999999999999999999999999999998764

>PRK13409 putative ATPase RIL; Provisional

Probab=99.58  E-value=1.5e-16  Score=118.82  Aligned_cols=61  Identities=26%  Similarity=0.406  Sum_probs=54.5

Q ss_pred             ccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee-----------eeecccc
Q psy7220          12 HLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----------VMNHSIR   73 (80)
Q Consensus        12 ~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~-----------~~~~~i~   73 (80)
                      ..++++|+. ..+|++++ .+++|++++|+||||||||||+++|+|+++|+.|+|.           ++|+++.
T Consensus        77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~  149 (590)
T PRK13409         77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQ  149 (590)
T ss_pred             cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHH
Confidence            346788886 46999999 8999999999999999999999999999999999997           8887654

>PRK13409 putative ATPase RIL; Provisional

Probab=99.57  E-value=2.8e-16  Score=117.32  Aligned_cols=59  Identities=31%  Similarity=0.362  Sum_probs=52.6

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      ++..++++.|++. .|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++
T Consensus       341 l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~  399 (590)
T PRK13409        341 VEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE  399 (590)
T ss_pred             EEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe
Confidence            5566677777664 5899999999999999999999999999999999999999999875

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.56  E-value=5.8e-16  Score=102.01  Aligned_cols=55  Identities=25%  Similarity=0.521  Sum_probs=51.8

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .-.+|++++|.|++||.++|+||+|||||||+-+++|+..|++|+|.+.|+++..
T Consensus        22 ~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~   76 (228)
T COG4181          22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHK   76 (228)
T ss_pred             ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhh
Confidence            3579999999999999999999999999999999999999999999999998654

>KOG0056|consensus

Probab=99.55  E-value=4.9e-16  Score=114.84  Aligned_cols=67  Identities=34%  Similarity=0.569  Sum_probs=61.9

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++..++++.|. ++++|+|+||.+.+|+.++++||+|+||||++|+|.++++..+|.|.++|++++.
T Consensus       537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrn  604 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRN  604 (790)
T ss_pred             eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHH
Confidence            567788899885 5889999999999999999999999999999999999999999999999999753

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.55  E-value=5.7e-16  Score=124.43  Aligned_cols=66  Identities=29%  Similarity=0.431  Sum_probs=60.1

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|..  .++|+++||+|++||.+||+|+||||||||+++|.|+++ ++|+|.++|.++.+
T Consensus      1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred             eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEccc
Confidence            4778888998854  679999999999999999999999999999999999997 78999999998753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.54  E-value=1.1e-15  Score=101.31  Aligned_cols=63  Identities=25%  Similarity=0.436  Sum_probs=58.5

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      -++.+.+++.|+.....+++||++.+||.++|+|++|||||||+++|++-+.|+.|+|.+...
T Consensus         6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r   68 (258)
T COG4107           6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR   68 (258)
T ss_pred             ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence            456678899999999999999999999999999999999999999999999999999998653

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.53  E-value=9.7e-16  Score=101.92  Aligned_cols=44  Identities=43%  Similarity=0.688  Sum_probs=41.7

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      |++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   44 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP   44 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence            57899999999999999999999999999999999999999765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>KOG0055|consensus

Probab=99.53  E-value=1.1e-15  Score=120.37  Aligned_cols=67  Identities=27%  Similarity=0.560  Sum_probs=62.4

Q ss_pred             hhccccccCCCCCc---cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~---~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.++++|.|..+   ++++|+||++++|+.++|||||||||||.+.+|-+++.|+.|.|.++|+++.+
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ 1056 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKD 1056 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccccc
Confidence            68889999999754   69999999999999999999999999999999999999999999999998764

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.52  E-value=1.3e-15  Score=121.97  Aligned_cols=64  Identities=25%  Similarity=0.335  Sum_probs=55.5

Q ss_pred             ccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceee---cCCCceeeeecccc
Q psy7220          10 DSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~---~~~G~i~~~~~~i~   73 (80)
                      +.+++++.++    .+.+|+++|+.+++||+++|+||||||||||+++|+|+.+   |++|+|.++|+++.
T Consensus       761 ~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~  831 (1394)
T TIGR00956       761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD  831 (1394)
T ss_pred             EEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence            4556666553    4679999999999999999999999999999999999987   67899999998763

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.52  E-value=2e-15  Score=98.31  Aligned_cols=47  Identities=17%  Similarity=0.239  Sum_probs=42.3

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      ..++++++||++++|++++|+||||||||||++++.    +++|++.+++.
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~   53 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISF   53 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCc
Confidence            457999999999999999999999999999999884    36899998865

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.52  E-value=2.1e-15  Score=111.68  Aligned_cols=62  Identities=32%  Similarity=0.565  Sum_probs=56.1

Q ss_pred             hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      -++..++++.|++ +.+++++||.|.+|+.++|+||||+|||||+++|+|...|.+|+|.+..
T Consensus       321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~  383 (530)
T COG0488         321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE  383 (530)
T ss_pred             eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC
Confidence            4567888899965 6899999999999999999999999999999999999999999988754

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.52  E-value=1.2e-15  Score=106.88  Aligned_cols=65  Identities=23%  Similarity=0.471  Sum_probs=53.8

Q ss_pred             ccccccCCCC----CccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-c----CCCceeeeeccccc
Q psy7220          10 DSHLETFPYD----TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-P----TSGNAYVMNHSIRD   74 (80)
Q Consensus        10 ~~~~~~~~~~----~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-~----~~G~i~~~~~~i~~   74 (80)
                      ++++++..|.    ...+++++||++++||++||+|+|||||||+.+.|.|+++ |    .+|+|.++|+++.+
T Consensus         3 ~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~   76 (316)
T COG0444           3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS   76 (316)
T ss_pred             eEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCccccc
Confidence            3445555443    2479999999999999999999999999999999999997 3    46899999987543

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.50  E-value=3.5e-15  Score=110.42  Aligned_cols=54  Identities=33%  Similarity=0.542  Sum_probs=49.9

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC----CCceeeeeccccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT----SGNAYVMNHSIRD   74 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~----~G~i~~~~~~i~~   74 (80)
                      ..+++++||++.+||++||+|.|||||||+.++|.|+.++.    +|+|.|+|+++..
T Consensus        22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~   79 (539)
T COG1123          22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLG   79 (539)
T ss_pred             eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhc
Confidence            36999999999999999999999999999999999999887    7999999987543

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.49  E-value=4.2e-15  Score=119.68  Aligned_cols=62  Identities=23%  Similarity=0.490  Sum_probs=56.7

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .++.+++++.|++  +++|+++||++++|++++|+||||||||||+++|.|+++|++|+|.++|
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g  699 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG  699 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC
Confidence            4677788888864  5799999999999999999999999999999999999999999999876

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0059|consensus

Probab=99.48  E-value=9.6e-15  Score=113.04  Aligned_cols=71  Identities=55%  Similarity=0.785  Sum_probs=63.4

Q ss_pred             hhhccccccCCCCCcc-ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccccccc
Q psy7220           7 QTVDSHLETFPYDTKP-AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD   77 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~-vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~~~~   77 (80)
                      ..+...++++.|+.+. +++++|+.|++||++|++|+|||||||+++++.|..+|+.|+++++|.++..+.+
T Consensus       563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~  634 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD  634 (885)
T ss_pred             ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc
Confidence            4556677788887766 9999999999999999999999999999999999999999999999998876444

>KOG0054|consensus

Probab=99.47  E-value=5.7e-15  Score=117.71  Aligned_cols=67  Identities=24%  Similarity=0.416  Sum_probs=61.4

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.++++.+|..  ..||+++||.|++||.+||+|++|||||||..+|.++.+|.+|+|.++|.++.+
T Consensus      1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISK 1206 (1381)
T ss_pred             eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccc
Confidence            6777888888865  479999999999999999999999999999999999999999999999998764

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.47  E-value=8.3e-15  Score=109.61  Aligned_cols=55  Identities=27%  Similarity=0.310  Sum_probs=50.2

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC---CCceeeeecccc
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR   73 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i~   73 (80)
                      +++++|+++|+++++||+++|+||||||||||+++|+|..++.   +|+|.++|.++.
T Consensus        36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~   93 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID   93 (617)
T ss_pred             CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence            3578999999999999999999999999999999999998774   799999998754

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.47  E-value=1e-14  Score=107.44  Aligned_cols=67  Identities=31%  Similarity=0.536  Sum_probs=57.3

Q ss_pred             hhccccccCCC--CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~--~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+.++++++..  ..+++++++||++.+||.++||||||||||||.|+|.|.++|.+|.|.++|-++.+
T Consensus       334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q  402 (580)
T COG4618         334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ  402 (580)
T ss_pred             eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence            34445555432  34689999999999999999999999999999999999999999999999987654

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.46  E-value=1.1e-14  Score=102.67  Aligned_cols=54  Identities=37%  Similarity=0.601  Sum_probs=50.5

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ...++++||+|++||+++|.|-||||||||+|+++++++|++|+|+++|.++..
T Consensus        41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~   94 (386)
T COG4175          41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK   94 (386)
T ss_pred             EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhc
Confidence            356789999999999999999999999999999999999999999999998754

>PLN03140 ABC transporter G family member; Provisional

Probab=99.45  E-value=1.1e-14  Score=117.12  Aligned_cols=54  Identities=24%  Similarity=0.252  Sum_probs=50.7

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC---CCceeeeecccc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR   73 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i~   73 (80)
                      .+.+|+|+|+.+++|++++|+||||||||||+++|+|..+|+   +|+|.++|+++.
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~  233 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLN  233 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEech
Confidence            467999999999999999999999999999999999999988   999999998764

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.43  E-value=2e-14  Score=115.12  Aligned_cols=55  Identities=18%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeecee----ecCCCceeeeecccc
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSIR   73 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~----~~~~G~i~~~~~~i~   73 (80)
                      ..+++|+++|+.+++||+++|+||||||||||+++|+|..    +|.+|+|.++|+++.
T Consensus        72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~  130 (1394)
T TIGR00956        72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPE  130 (1394)
T ss_pred             CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehH
Confidence            3467999999999999999999999999999999999986    468999999998764

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.43  E-value=3.6e-14  Score=86.27  Aligned_cols=48  Identities=15%  Similarity=0.087  Sum_probs=43.3

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ..++++++|++++|++++|+||||||||||++++.      .|++.+++.++..
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~   49 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE   49 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH
Confidence            57899999999999999999999999999999875      7889999987643

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.42  E-value=3.9e-14  Score=113.99  Aligned_cols=49  Identities=27%  Similarity=0.609  Sum_probs=47.2

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      +++|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g  487 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG  487 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence            5699999999999999999999999999999999999999999999876

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.41  E-value=3.2e-14  Score=115.23  Aligned_cols=62  Identities=23%  Similarity=0.502  Sum_probs=55.9

Q ss_pred             hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC-Cceeeee
Q psy7220           8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~-G~i~~~~   69 (80)
                      .++.+++++.|+.   +++|+++||+|++|+.++|+||+|||||||+++|.|+++|++ |+|.+.+
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~  679 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG  679 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC
Confidence            4777888888863   579999999999999999999999999999999999999999 8988754

>PLN03140 ABC transporter G family member; Provisional

Probab=99.40  E-value=6.4e-14  Score=112.77  Aligned_cols=55  Identities=24%  Similarity=0.380  Sum_probs=49.1

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec--CCCceeeeecccc
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIR   73 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i~~~~~~i~   73 (80)
                      +++.+|+++|+.+++|++++|+||||||||||+++|+|..++  .+|+|.++|++..
T Consensus       891 ~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~  947 (1470)
T PLN03140        891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK  947 (1470)
T ss_pred             CCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC
Confidence            345799999999999999999999999999999999998763  6899999997653

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.40  E-value=5.5e-14  Score=91.31  Aligned_cols=64  Identities=19%  Similarity=0.387  Sum_probs=56.3

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC---CCceeeeecccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIR   73 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i~   73 (80)
                      .+.+++...+++-.|-++||+|.+||++.|.||+|||||||+..+.|.+.++   +|+++++++++.
T Consensus         4 ~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~   70 (213)
T COG4136           4 CLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD   70 (213)
T ss_pred             eeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecc
Confidence            4456677778889999999999999999999999999999999999988764   799999998764

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.39  E-value=1.1e-13  Score=91.42  Aligned_cols=50  Identities=32%  Similarity=0.572  Sum_probs=47.3

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      -++++++||+++.|||+++-||+|+||||++++|.+-+.|++|+|.+..+
T Consensus        24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~   73 (235)
T COG4778          24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHE   73 (235)
T ss_pred             eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeC
Confidence            47999999999999999999999999999999999999999999998654

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.38  E-value=7.7e-14  Score=102.47  Aligned_cols=52  Identities=13%  Similarity=0.150  Sum_probs=46.7

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC-ceeeeeccccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSIRD   74 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~i~~~~~~i~~   74 (80)
                      ..+|+++|+++++||+++|+||||||||||++  .++..|++| +|.++|+++..
T Consensus        19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~   71 (504)
T TIGR03238        19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS   71 (504)
T ss_pred             HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence            36899999999999999999999999999999  677788888 79999988753

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PTZ00243 ABC transporter; Provisional

Probab=99.38  E-value=9.9e-14  Score=112.10  Aligned_cols=52  Identities=25%  Similarity=0.424  Sum_probs=47.9

Q ss_pred             CCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220          17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus        17 ~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      .++++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+.
T Consensus       669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~  720 (1560)
T PTZ00243        669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE  720 (1560)
T ss_pred             ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence            3456679999999999999999999999999999999999999999998874

>PLN03232 ABC transporter C family member; Provisional

Probab=99.37  E-value=1.1e-13  Score=111.50  Aligned_cols=59  Identities=20%  Similarity=0.446  Sum_probs=52.7

Q ss_pred             hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220           8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY   66 (80)
Q Consensus         8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~   66 (80)
                      .++.+++++.|+.   +++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|.+.
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~  675 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV  675 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE
Confidence            4677888888863   5799999999999999999999999999999999999999988653

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.37  E-value=1.2e-13  Score=90.84  Aligned_cols=63  Identities=25%  Similarity=0.373  Sum_probs=58.8

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      +.+.++++.|+.+.+|.||+|+-++||.++++||+|+|||||+|.|+-+.-|.+|+..+.|..
T Consensus         3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~   65 (242)
T COG4161           3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNH   65 (242)
T ss_pred             eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccc
Confidence            567788999999999999999999999999999999999999999999999999999997754

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.4e-13  Score=99.88  Aligned_cols=67  Identities=33%  Similarity=0.533  Sum_probs=60.3

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+...++.+.|. ++++|+++||.+++|+.++++|++|+||||++++|.+++++.+|.|.++|++++.
T Consensus       262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~  329 (497)
T COG5265         262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD  329 (497)
T ss_pred             eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHH
Confidence            455666777774 5789999999999999999999999999999999999999999999999998753

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.22  E-value=2.3e-12  Score=93.58  Aligned_cols=53  Identities=32%  Similarity=0.428  Sum_probs=49.6

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ..+++++||++++|+.+||+|+||||||||-++|.++++++ |+|.|.|+++..
T Consensus       300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~  352 (534)
T COG4172         300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG  352 (534)
T ss_pred             eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence            46999999999999999999999999999999999999876 999999998763

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.22  E-value=2e-12  Score=86.42  Aligned_cols=35  Identities=14%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             CCCCccccceeeeeeccceeeeeecccCCCceeEe
Q psy7220          17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        17 ~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll   51 (80)
                      +..+..+|+++||+|++||+++|+|+||||||||+
T Consensus         4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             ccchhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence            34456799999999999999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG2355|consensus

Probab=99.19  E-value=5.7e-12  Score=85.37  Aligned_cols=64  Identities=30%  Similarity=0.438  Sum_probs=56.2

Q ss_pred             hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220           8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      .+++.+++|.|.. .+++.++|++++.|...-++|.||||||||+++|+|-.-...|.|.+.|++
T Consensus        13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrs   77 (291)
T KOG2355|consen   13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRS   77 (291)
T ss_pred             eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcC
Confidence            5778888888854 589999999999999999999999999999999999876667888887765

>KOG0061|consensus

Probab=99.19  E-value=3.5e-12  Score=95.87  Aligned_cols=52  Identities=29%  Similarity=0.451  Sum_probs=48.0

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec---CCCceeeeecc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHS   71 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~---~~G~i~~~~~~   71 (80)
                      .+++|+++|..+++||+.||+||+|||||||+++|+|-...   .+|+|.+||++
T Consensus        42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~   96 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP   96 (613)
T ss_pred             cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc
Confidence            47899999999999999999999999999999999998864   68999999954

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.15  E-value=6.5e-12  Score=83.90  Aligned_cols=35  Identities=23%  Similarity=0.416  Sum_probs=30.7

Q ss_pred             CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      +.|++..++++++     +++++|+||||||||||+++|+
T Consensus        10 ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          10 KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHH
Confidence            3577778888876     7899999999999999999997

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0927|consensus

Probab=99.14  E-value=8.6e-12  Score=92.63  Aligned_cols=63  Identities=30%  Similarity=0.531  Sum_probs=55.1

Q ss_pred             hhccccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220           8 TVDSHLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus         8 ~~~~~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      -+...++.|.|.+. .++++++|.|..++.+++|||||+|||||++++.|.+.|+.|.+....+
T Consensus       389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H  452 (614)
T KOG0927|consen  389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH  452 (614)
T ss_pred             eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc
Confidence            45557778888665 6889999999999999999999999999999999999999998876543

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.13  E-value=4.8e-12  Score=88.67  Aligned_cols=35  Identities=37%  Similarity=0.651  Sum_probs=32.8

Q ss_pred             eecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          39 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        39 iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      |+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~   35 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVT   35 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECC
Confidence            68999999999999999999999999999998764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.12  E-value=9.7e-12  Score=90.42  Aligned_cols=55  Identities=31%  Similarity=0.465  Sum_probs=48.9

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-----CCCceeeeeccccc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-----TSGNAYVMNHSIRD   74 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-----~~G~i~~~~~~i~~   74 (80)
                      ...+++++||+|++||.++|+|+||||||-....+.++++.     .+|+|.|+|+++-.
T Consensus        22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~   81 (534)
T COG4172          22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA   81 (534)
T ss_pred             ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence            57899999999999999999999999999999999998864     36899999988643

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.11  E-value=6.4e-12  Score=82.74  Aligned_cols=47  Identities=15%  Similarity=0.290  Sum_probs=39.1

Q ss_pred             ceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC---------Cceeeeeccc
Q psy7220          25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---------GNAYVMNHSI   72 (80)
Q Consensus        25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~---------G~i~~~~~~i   72 (80)
                      +++++++++| +++|+||||||||||+++|+++.++..         |++.+.+++.
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~   69 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSET   69 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCC
Confidence            6789999999 999999999999999999999876553         3566666554

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.10  E-value=1.5e-11  Score=92.25  Aligned_cols=61  Identities=23%  Similarity=0.297  Sum_probs=52.0

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      .+++++++..-+ +++.+++.+|++++||.+-|.|+||||||||+|+|+|+.|-.+|+|..-
T Consensus       392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P  453 (604)
T COG4178         392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP  453 (604)
T ss_pred             eeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC
Confidence            455566665443 3689999999999999999999999999999999999999988987654

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.09  E-value=2.2e-11  Score=85.16  Aligned_cols=49  Identities=24%  Similarity=0.454  Sum_probs=45.5

Q ss_pred             eeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++|+.+...+++|-|+|||||||++++++|+.+|++|.|.++|+.+.+
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~D   64 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVD   64 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeec
Confidence            7889999989999999999999999999999999999999999976544

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.07  E-value=2.4e-11  Score=80.74  Aligned_cols=51  Identities=29%  Similarity=0.437  Sum_probs=45.8

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      =|-.+|.++..||++=++||||||||||+-.++|+. |.+|+|.+.|.++..
T Consensus        14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~   64 (248)
T COG4138          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEA   64 (248)
T ss_pred             cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhH
Confidence            456889999999999999999999999999999986 578999999988653

>KOG0927|consensus

Probab=99.03  E-value=5.2e-11  Score=88.53  Aligned_cols=57  Identities=23%  Similarity=0.514  Sum_probs=52.2

Q ss_pred             hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG   63 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G   63 (80)
                      .++.+.++++.|.+..+++|..|++.+|+.+||+|+|||||||+|+++.+-..|..-
T Consensus        74 ~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~  130 (614)
T KOG0927|consen   74 RDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE  130 (614)
T ss_pred             ccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc
Confidence            378888999999999999999999999999999999999999999999988776543

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.00  E-value=4.2e-11  Score=79.65  Aligned_cols=42  Identities=14%  Similarity=0.241  Sum_probs=35.4

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .+++++.. .|++..+++++++     ++++|+|||||||||++++|.
T Consensus         5 ~l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274           5 KLVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             EEEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH
Confidence            45555544 6788889998887     899999999999999999987

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=99.00  E-value=2.9e-11  Score=78.64  Aligned_cols=48  Identities=21%  Similarity=0.212  Sum_probs=42.1

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      ...+-+.+.+++|+.++|+||||||||||+++|+++++|+.|.+.+.+
T Consensus        13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied   60 (186)
T cd01130          13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED   60 (186)
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence            345556678899999999999999999999999999999989888865

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0060|consensus

Probab=98.95  E-value=2.3e-10  Score=85.68  Aligned_cols=48  Identities=25%  Similarity=0.396  Sum_probs=44.3

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      +..+++++||+|++|+.+-|.||||||||+|+|++.|+++...|.+..
T Consensus       447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k  494 (659)
T KOG0060|consen  447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTK  494 (659)
T ss_pred             CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEe
Confidence            456889999999999999999999999999999999999988888764

>KOG0064|consensus

Probab=98.93  E-value=2e-10  Score=85.83  Aligned_cols=48  Identities=25%  Similarity=0.418  Sum_probs=42.8

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      ...++..++|+|++|-.+-|+||||||||+|+|+|.|++|...|..+.
T Consensus       494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~  541 (728)
T KOG0064|consen  494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI  541 (728)
T ss_pred             cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec
Confidence            456889999999999999999999999999999999999987775543

>KOG0066|consensus

Probab=98.92  E-value=1.5e-10  Score=85.50  Aligned_cols=61  Identities=31%  Similarity=0.589  Sum_probs=54.7

Q ss_pred             hhccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220           8 TVDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus         8 ~~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      .+-+|+++|.| +.++++.+++|-|.--..++|+||||.|||||+++|.|-+.|..|+..-+
T Consensus       586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn  647 (807)
T KOG0066|consen  586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN  647 (807)
T ss_pred             eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc
Confidence            45568889999 66789999999999999999999999999999999999999999976544

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.92  E-value=3e-10  Score=75.14  Aligned_cols=47  Identities=26%  Similarity=0.311  Sum_probs=35.1

Q ss_pred             hhhccccccCCCCCccccceeeeeec-cceeeeeecccCCCceeEeeeeece
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVG-RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~-~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ..+++++.. .|.+.   ++++|... +|++++|+||||||||||+++|++.
T Consensus         4 ~~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~   51 (213)
T cd03279           4 LKLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYA   51 (213)
T ss_pred             EEEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheee
Confidence            355666655 44333   56667654 5899999999999999999999953

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0054|consensus

Probab=98.92  E-value=2.8e-10  Score=91.43  Aligned_cols=62  Identities=23%  Similarity=0.528  Sum_probs=52.8

Q ss_pred             hccccccCCCC---CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220           9 VDSHLETFPYD---TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus         9 ~~~~~~~~~~~---~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      +++++.++..+   ..+.|+|+||+|++|+.++|+|+.|||||+|+.+|.|..+..+|++.++|.
T Consensus       519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs  583 (1381)
T KOG0054|consen  519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS  583 (1381)
T ss_pred             EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe
Confidence            44455555432   345999999999999999999999999999999999999999999999874

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.89  E-value=3.1e-10  Score=83.04  Aligned_cols=49  Identities=31%  Similarity=0.587  Sum_probs=43.2

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeecee--------ecCCCceeee
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--------KPTSGNAYVM   68 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--------~~~~G~i~~~   68 (80)
                      ...+++|++|.+++||+++|+|+||+||||+++++.|..        +|++|.+.+-
T Consensus       395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp  451 (593)
T COG2401         395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP  451 (593)
T ss_pred             eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence            457999999999999999999999999999999999874        4778877653

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.89  E-value=3.4e-10  Score=74.27  Aligned_cols=41  Identities=29%  Similarity=0.449  Sum_probs=34.1

Q ss_pred             ccceeeeeeccce-eeeeecccCCCceeEeeeee--------ceeecCCC
Q psy7220          23 AVNQISFGVGRGE-CFGLLGLNGAGKTTTFKMLT--------GAIKPTSG   63 (80)
Q Consensus        23 vl~~isl~i~~g~-~~~iiG~nGsGKsTll~~l~--------gl~~~~~G   63 (80)
                      .+.++||++.+|+ +++|+||||+|||||++++.        |.+-|...
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~   65 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE   65 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc
Confidence            4458999999995 79999999999999999998        75555443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.88  E-value=3.1e-10  Score=74.95  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +..++++++++.  |++++|+||||||||||+++|++..
T Consensus        13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence            456788888775  6999999999999999999998754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0062|consensus

Probab=98.88  E-value=1.6e-10  Score=85.53  Aligned_cols=51  Identities=25%  Similarity=0.489  Sum_probs=47.0

Q ss_pred             hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220           6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus         6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -.|+.+.+....|+++.+|++-++++..|..+|++|+||+|||||||+|+.
T Consensus        78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            346777788889999999999999999999999999999999999999986

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.87  E-value=3.6e-10  Score=82.49  Aligned_cols=52  Identities=19%  Similarity=0.351  Sum_probs=47.3

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.|.|.+.|++-
T Consensus       145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg  196 (438)
T PRK07721        145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG  196 (438)
T ss_pred             chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence            35689999 99999999999999999999999999999999999999876554

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.82  E-value=7.8e-10  Score=80.96  Aligned_cols=59  Identities=15%  Similarity=0.151  Sum_probs=48.6

Q ss_pred             ccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220          10 DSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        10 ~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      +...++..| .+..+++.++ .+.+|++++|+|+||||||||+++|+++.+|+.|.+.+.|
T Consensus       141 ~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liG  200 (450)
T PRK06002        141 TRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVG  200 (450)
T ss_pred             EeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecc
Confidence            334444445 3457888885 9999999999999999999999999999999999888864

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.81  E-value=7e-10  Score=80.90  Aligned_cols=52  Identities=23%  Similarity=0.379  Sum_probs=47.1

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      .+..+++++ +.+.+|++++|+|+||+|||||+++|++...++.+.+.+.|++
T Consensus       141 tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        141 TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            356899999 9999999999999999999999999999999998888777764

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.81  E-value=4e-10  Score=76.08  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=30.6

Q ss_pred             ceeeeeecccCCCceeEeeeeeceeecC-CCceeeeec
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNH   70 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~   70 (80)
                      ..+++|+|||||||||++++|++++.+. .|++.+.+.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~   62 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL   62 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCH
Confidence            5589999999999999999999998775 356666544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.81  E-value=9.3e-10  Score=80.28  Aligned_cols=42  Identities=26%  Similarity=0.489  Sum_probs=38.9

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS   62 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~   62 (80)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+++.+++.
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv  183 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADV  183 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCe
Confidence            35799999 9999999999999999999999999999988765

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.79  E-value=8.2e-10  Score=76.24  Aligned_cols=39  Identities=13%  Similarity=0.074  Sum_probs=36.5

Q ss_pred             eeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..++|+||||||||||+++|+|+++|++|++.++|+++.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~  150 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG  150 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence            568999999999999999999999999999999998874

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.78  E-value=9.1e-10  Score=81.59  Aligned_cols=61  Identities=16%  Similarity=0.161  Sum_probs=53.9

Q ss_pred             cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++...++++.+++.+++.+..|+.+.++|+||+|||||++.|.|+++|.+|+..+....+.
T Consensus       189 d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~  249 (506)
T PRK09862        189 DLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL  249 (506)
T ss_pred             CeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence            4555667778999999999999999999999999999999999999999999888766543

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.77  E-value=1.1e-09  Score=77.38  Aligned_cols=51  Identities=20%  Similarity=0.407  Sum_probs=45.7

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      +..+++.+ +.+.+|++++|+|+||+|||||+++|++...++.|.+...|++
T Consensus        56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer  106 (326)
T cd01136          56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER  106 (326)
T ss_pred             CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence            45789999 9999999999999999999999999999999988877776643

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.76  E-value=1.4e-09  Score=72.23  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=34.9

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ....+.+++++++++|++++|+||||+||||++++++++
T Consensus        14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~   52 (204)
T cd03282          14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL   52 (204)
T ss_pred             CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            345789999999999999999999999999999998743

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.75  E-value=1.7e-09  Score=72.79  Aligned_cols=48  Identities=21%  Similarity=0.235  Sum_probs=42.3

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeec-eeecCCCceeee
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG-AIKPTSGNAYVM   68 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g-l~~~~~G~i~~~   68 (80)
                      ..+.+++++.+.+|++++|.||||+||||+++++++ .+.+..|...+.
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a   66 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA   66 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence            568899999999999999999999999999999998 566777766654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08149 ATP synthase SpaL; Validated

Probab=98.73  E-value=2e-09  Score=78.39  Aligned_cols=53  Identities=21%  Similarity=0.345  Sum_probs=46.1

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC---Cceeeeecccc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIR   73 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~---G~i~~~~~~i~   73 (80)
                      +..+++++ +.+.+|++++|+|+||+|||||+++|++...++.   |.|...++++.
T Consensus       138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~  193 (428)
T PRK08149        138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVT  193 (428)
T ss_pred             CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHH
Confidence            35799999 9999999999999999999999999999887765   67777776654

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.73  E-value=1.5e-09  Score=79.38  Aligned_cols=52  Identities=17%  Similarity=0.307  Sum_probs=47.4

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +..+++++ +.+.+|++++|+|+||+|||||++++++...++.|.+.+.|++-
T Consensus       150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~  201 (441)
T PRK09099        150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG  201 (441)
T ss_pred             Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence            45799999 99999999999999999999999999999999989888888653

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.72  E-value=1.5e-09  Score=78.92  Aligned_cols=53  Identities=19%  Similarity=0.299  Sum_probs=46.4

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ..+++ .+|.+.+|++++|+|+||+|||||+++|++..+|+.|.+.+.|++-.+
T Consensus       128 i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~e  180 (418)
T TIGR03498       128 VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGRE  180 (418)
T ss_pred             cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechH
Confidence            45664 699999999999999999999999999999999999988888875443

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.72  E-value=2.4e-09  Score=78.94  Aligned_cols=43  Identities=44%  Similarity=0.743  Sum_probs=36.4

Q ss_pred             cccceeeeeec-----cceeeeeecccCCCceeEeeeeeceeecCCCc
Q psy7220          22 PAVNQISFGVG-----RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN   64 (80)
Q Consensus        22 ~vl~~isl~i~-----~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~   64 (80)
                      ..+.++.|++.     .||+++++||||-|||||.++|+|.++|++|.
T Consensus       350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~  397 (591)
T COG1245         350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS  397 (591)
T ss_pred             eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence            35556666655     56779999999999999999999999999995

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.71  E-value=1.4e-09  Score=71.42  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=27.4

Q ss_pred             ceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -..++++.+|++++|+||||||||||++++++
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence            34556666899999999999999999999983

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.70  E-value=2.9e-09  Score=70.39  Aligned_cols=38  Identities=34%  Similarity=0.411  Sum_probs=30.8

Q ss_pred             eeeeccceeeeeecccCCCceeEeeee----eceeecCCCcee
Q psy7220          28 SFGVGRGECFGLLGLNGAGKTTTFKML----TGAIKPTSGNAY   66 (80)
Q Consensus        28 sl~i~~g~~~~iiG~nGsGKsTll~~l----~gl~~~~~G~i~   66 (80)
                      ++++.+| +++|+||||||||||+++|    .|..+|..|.+.
T Consensus        17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~   58 (204)
T cd03240          17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGA   58 (204)
T ss_pred             EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccccccc
Confidence            3455566 9999999999999999998    488887777554

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.67  E-value=3.1e-09  Score=77.16  Aligned_cols=54  Identities=20%  Similarity=0.396  Sum_probs=48.0

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +..+++++ +.+.+|++++|+|++|+|||||+++|++..+++.|.+.+.|++..+
T Consensus       124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~e  177 (413)
T TIGR03497       124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGRE  177 (413)
T ss_pred             cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHH
Confidence            45789999 9999999999999999999999999999999998988887766543

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.66  E-value=3.1e-09  Score=77.26  Aligned_cols=51  Identities=18%  Similarity=0.354  Sum_probs=45.9

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|++...++.|.+...|++
T Consensus       132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~  182 (422)
T TIGR02546       132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER  182 (422)
T ss_pred             Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence            45799999 9999999999999999999999999999999988888775543

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.66  E-value=6.8e-09  Score=76.48  Aligned_cols=63  Identities=25%  Similarity=0.446  Sum_probs=54.5

Q ss_pred             ccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          10 DSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        10 ~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ++++++..... .+.+.++||++++||++||.|-.|.|.+.|+.+|+|+.++.+|+|.++|+++
T Consensus       259 ~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v  322 (501)
T COG3845         259 EVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDV  322 (501)
T ss_pred             EEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEec
Confidence            34445544332 4789999999999999999999999999999999999998899999999986

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.64  E-value=3.9e-09  Score=68.84  Aligned_cols=28  Identities=39%  Similarity=0.380  Sum_probs=26.0

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      ++|++++|+||+|||||||++.|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999998874

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.64  E-value=4.1e-09  Score=77.02  Aligned_cols=51  Identities=18%  Similarity=0.394  Sum_probs=45.1

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      +..+++.+ +.+.+|++++|+|+||+|||||+++|++..+++.+.+...|++
T Consensus       150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r  200 (440)
T TIGR01026       150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER  200 (440)
T ss_pred             eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence            35789999 9999999999999999999999999999998888777766554

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR00235 udk uridine kinase

Probab=98.63  E-value=4.3e-09  Score=69.28  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=26.9

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceeec
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      ++|++++|+|+||||||||++.|++++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            68999999999999999999999998765

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.61  E-value=3.9e-09  Score=73.60  Aligned_cols=42  Identities=21%  Similarity=0.260  Sum_probs=38.0

Q ss_pred             eeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220          27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus        27 isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      +++.++.|+.+.|+|++|||||||+++|++++++..+.+.+.
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie  178 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE  178 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc
Confidence            567788999999999999999999999999999888877775

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.61  E-value=6.1e-09  Score=67.56  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=28.0

Q ss_pred             ceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      |++++|+|||||||||++++|++...+   .+.+.+..
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~   36 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRY   36 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEE
Confidence            689999999999999999999987654   35554433

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.60  E-value=5.3e-09  Score=69.93  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=31.7

Q ss_pred             eccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA   65 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i   65 (80)
                      -.+..+++|.|+||||||||++.|++++++..|.+
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~   64 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP   64 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence            35678999999999999999999999999998983

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.59  E-value=6.4e-09  Score=67.50  Aligned_cols=35  Identities=20%  Similarity=0.450  Sum_probs=29.6

Q ss_pred             cceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      +|++++|+|+|||||||++++|++++.+    +.+++.+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~   36 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDD   36 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcc
Confidence            5899999999999999999999998765    4555554

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.59  E-value=1.1e-08  Score=84.09  Aligned_cols=53  Identities=15%  Similarity=0.155  Sum_probs=41.7

Q ss_pred             cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220          13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .+...+.....|++++|++++|++++|+|+||||||||+..+  ++.  .|++.+..
T Consensus       940 ~i~i~~~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~e  992 (1809)
T PRK00635        940 DITIKNAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYAE  992 (1809)
T ss_pred             eEEEeccccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeeec
Confidence            344444545679999999999999999999999999977655  333  78887764

>KOG0065|consensus

Probab=98.58  E-value=7.1e-09  Score=83.05  Aligned_cols=55  Identities=27%  Similarity=0.375  Sum_probs=47.9

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee--cCCCceeeeecccc
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYVMNHSIR   73 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~--~~~G~i~~~~~~i~   73 (80)
                      +.+++|++++=-++||-.+||+|+|||||||||++|+|=..  ..+|+|.++|.+..
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~  858 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD  858 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc
Confidence            45789999999999999999999999999999999998432  24689999998865

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.57  E-value=7.1e-09  Score=75.24  Aligned_cols=51  Identities=24%  Similarity=0.388  Sum_probs=44.7

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      +..+++.+ |.+.+|++++|+|+||+|||||+++|++...++.+.+...|++
T Consensus       124 Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer  174 (411)
T TIGR03496       124 GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER  174 (411)
T ss_pred             eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence            45788888 9999999999999999999999999999998887776666654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.56  E-value=5.2e-09  Score=58.04  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=28.8

Q ss_pred             ceeeeeecc-ceeeeeecccCCCceeEeeeeeceeecCC
Q psy7220          25 NQISFGVGR-GECFGLLGLNGAGKTTTFKMLTGAIKPTS   62 (80)
Q Consensus        25 ~~isl~i~~-g~~~~iiG~nGsGKsTll~~l~gl~~~~~   62 (80)
                      ++.++++.+ |+++.|.|+|||||||++.++.-++-+..
T Consensus        13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            344555654 56899999999999999998876665543

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.55  E-value=1.1e-08  Score=75.00  Aligned_cols=52  Identities=27%  Similarity=0.470  Sum_probs=43.9

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC---Cceeeeeccccc
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS---GNAYVMNHSIRD   74 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~---G~i~~~~~~i~~   74 (80)
                      .+++.+ |.+.+|++++|+|+||+|||||+++|+++.+++.   |.|.+.++++.+
T Consensus       164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e  218 (455)
T PRK07960        164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKD  218 (455)
T ss_pred             eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHH
Confidence            455444 9999999999999999999999999999988875   777777777643

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.54  E-value=1e-08  Score=74.82  Aligned_cols=52  Identities=19%  Similarity=0.363  Sum_probs=45.7

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..+++.+ |.+.+|+.++|+|++|+|||||+++|++..+++.|.+.+.|++..
T Consensus       144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~  195 (432)
T PRK06793        144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR  195 (432)
T ss_pred             CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc
Confidence            4577774 999999999999999999999999999999999998887776543

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.53  E-value=1.5e-08  Score=70.74  Aligned_cols=40  Identities=18%  Similarity=0.267  Sum_probs=33.0

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceee--cCCCceeeeecc
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYVMNHS   71 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~--~~~G~i~~~~~~   71 (80)
                      +.-.++||.|+||||||||+++|.+++.  |.+|.+.+-+.+
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D  101 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD  101 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence            4557999999999999999999999887  667887764443

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.52  E-value=1.9e-08  Score=69.16  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=30.9

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeee
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l   54 (80)
                      ..-|++++++|+.|.+++|.|+||||||||++.+
T Consensus         8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271           8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             hhcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence            3468999999999999999999999999999744

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK05922 type III secretion system ATPase; Validated

Probab=98.52  E-value=2e-08  Score=73.35  Aligned_cols=50  Identities=18%  Similarity=0.389  Sum_probs=42.9

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      -.+++.+ +.+.+|+.++|+|+||+|||||+++|++..+++.|.+...|+.
T Consensus       145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer  194 (434)
T PRK05922        145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER  194 (434)
T ss_pred             ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence            3567665 9999999999999999999999999999988888887665543

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.52  E-value=1.6e-08  Score=67.52  Aligned_cols=36  Identities=22%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ...+.++++++..+ ++++|+||||+|||||++++++
T Consensus        17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~   52 (216)
T cd03284          17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL   52 (216)
T ss_pred             CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence            34588999999887 9999999999999999999853

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.52  E-value=2e-08  Score=74.40  Aligned_cols=51  Identities=37%  Similarity=0.592  Sum_probs=48.4

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++||++++||++||.|--|||+|-++++|.|..++.+|+|.++|+++.
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~  324 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR  324 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEcc
Confidence            588999999999999999999999999999999999999999999998764

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.50  E-value=1.6e-08  Score=68.34  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=28.0

Q ss_pred             eeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      .+++|+|||||||||++.+|+++..+..|++..
T Consensus        23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~   55 (247)
T cd03275          23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRS   55 (247)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCcccccc
Confidence            389999999999999999999988766665544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=98.50  E-value=1.1e-08  Score=74.64  Aligned_cols=53  Identities=17%  Similarity=0.330  Sum_probs=46.1

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +..+++++ +.+.+|++++|+|+||+|||||+++|++...++.+.+...|++-.
T Consensus       144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergr  196 (434)
T PRK08472        144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGR  196 (434)
T ss_pred             hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccch
Confidence            35689999 999999999999999999999999999988777788877776543

>TIGR00368 Mg chelatase-related protein

Probab=98.49  E-value=2e-08  Score=74.43  Aligned_cols=56  Identities=21%  Similarity=0.309  Sum_probs=49.9

Q ss_pred             CCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        18 ~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++..+.+.+++.+..|+.+.++||+|+|||||++.+.++.+|.+|++.+....+.
T Consensus       195 ~Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~  250 (499)
T TIGR00368       195 KGQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW  250 (499)
T ss_pred             cCcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence            45667889999999999999999999999999999999999999998888766653

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PLN02796 D-glycerate 3-kinase

Probab=98.48  E-value=6.2e-09  Score=74.19  Aligned_cols=52  Identities=19%  Similarity=0.184  Sum_probs=42.1

Q ss_pred             ccccceeeeee---cccee-----eeeecccCCCceeEeeeeeceeecC---CCceeeeeccc
Q psy7220          21 KPAVNQISFGV---GRGEC-----FGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSI   72 (80)
Q Consensus        21 ~~vl~~isl~i---~~g~~-----~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i   72 (80)
                      ..+++++++.+   ++|+.     +||+|++|||||||++.|.+++.+.   .|.+.+++..+
T Consensus        79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL  141 (347)
T PLN02796         79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL  141 (347)
T ss_pred             HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence            35778888887   56665     9999999999999999999998764   46777777554

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.48  E-value=1.9e-08  Score=73.80  Aligned_cols=41  Identities=29%  Similarity=0.516  Sum_probs=37.4

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT   61 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~   61 (80)
                      +..+++.+ |.+.+|++++|+|+||+|||||+++|+++..++
T Consensus       155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d  195 (451)
T PRK05688        155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD  195 (451)
T ss_pred             ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            45789999 999999999999999999999999999987664

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.47  E-value=4e-08  Score=67.25  Aligned_cols=56  Identities=27%  Similarity=0.433  Sum_probs=44.2

Q ss_pred             eeehhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220           3 VTSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      ..+|+++.+...+ .-+...+++++|+++.+||+-|++|.+|||||-..++++|..+
T Consensus         3 LLDIrnL~IE~~T-sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k   58 (330)
T COG4170           3 LLDIRNLTIEFKT-SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK   58 (330)
T ss_pred             cccccceEEEEec-CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence            3445544444322 2355679999999999999999999999999999999999865

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.45  E-value=5.4e-08  Score=71.28  Aligned_cols=48  Identities=17%  Similarity=0.368  Sum_probs=40.1

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-CCCceeeee
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMN   69 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~~~   69 (80)
                      ..+++.+ |.+.+|+.++|+|+||+|||||+++|+++.++ +.+.+.+.|
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG  200 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG  200 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence            4688887 99999999999999999999999999998744 335566544

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.44  E-value=4.3e-08  Score=65.70  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=33.0

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      +...+.+++++++++++++.|.||||+||||+++.++
T Consensus        15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~   51 (222)
T cd03285          15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG   51 (222)
T ss_pred             CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence            3456899999999999999999999999999998753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=98.44  E-value=3.2e-08  Score=72.48  Aligned_cols=40  Identities=30%  Similarity=0.554  Sum_probs=35.5

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT   61 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~   61 (80)
                      ..+++.+ +.+.+|++++|+|+||+|||||+++|++...++
T Consensus       150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d  189 (444)
T PRK08972        150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD  189 (444)
T ss_pred             ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence            4577777 999999999999999999999999999976654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.43  E-value=2.2e-08  Score=73.95  Aligned_cols=42  Identities=31%  Similarity=0.415  Sum_probs=35.9

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCc
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN   64 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~   64 (80)
                      ++++.++.+++|.+++|+||||+||||++..|++.+....|.
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~  286 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA  286 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence            556677778899999999999999999999999988766664

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.42  E-value=5.3e-08  Score=76.41  Aligned_cols=31  Identities=23%  Similarity=0.420  Sum_probs=29.5

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEee
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFK   52 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~   52 (80)
                      ..|+++||+|++|++++|+|+||||||||++
T Consensus       621 ~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~  651 (924)
T TIGR00630       621 NNLKNITVSIPLGLFTCITGVSGSGKSTLIN  651 (924)
T ss_pred             CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence            4699999999999999999999999999997

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00767 rho transcription termination factor Rho

Probab=98.39  E-value=9.8e-08  Score=69.39  Aligned_cols=53  Identities=21%  Similarity=0.176  Sum_probs=45.8

Q ss_pred             hhccccccCCCCC-ccccc-----------eeeeeeccceeeeeecccCCCceeEeeeeeceeec
Q psy7220           8 TVDSHLETFPYDT-KPAVN-----------QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~-----------~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      .++..++++.|.+ +.+|+           |+.+.|.+|+.++|+||.|+||||+++.|...+..
T Consensus       130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~  194 (415)
T TIGR00767       130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR  194 (415)
T ss_pred             CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence            5677888988854 56886           99999999999999999999999999998886543

Members of this family differ in the specificity of RNA binding.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.39  E-value=4.8e-08  Score=68.77  Aligned_cols=42  Identities=24%  Similarity=0.263  Sum_probs=37.4

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++++++++||||+||||++..|++.+.+..++|.+.+.+..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~  153 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF  153 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            578999999999999999999999999888789998776653

>PRK01889 GTPase RsgA; Reviewed

Probab=98.39  E-value=2.2e-08  Score=71.24  Aligned_cols=48  Identities=23%  Similarity=0.352  Sum_probs=41.7

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      -++.+.-.+++|++++|+|+||+|||||++.|.|...+..|++.+++.
T Consensus       184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~  231 (356)
T PRK01889        184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDS  231 (356)
T ss_pred             cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCC
Confidence            355566667889999999999999999999999999999999998653

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.38  E-value=8.5e-08  Score=78.11  Aligned_cols=47  Identities=28%  Similarity=0.262  Sum_probs=39.8

Q ss_pred             cceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      +.+..|.+.+| +++|+|+|||||||++++|++++.|..|.+.+++..
T Consensus        18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~   64 (1486)
T PRK04863         18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT   64 (1486)
T ss_pred             ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence            34556777775 899999999999999999999999998999888654

>PRK06936 type III secretion system ATPase; Provisional

Probab=98.38  E-value=6.2e-08  Score=70.90  Aligned_cols=42  Identities=19%  Similarity=0.401  Sum_probs=38.0

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS   62 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~   62 (80)
                      +..+++++ +.+.+|++++|+|+||+|||||++++++...++-
T Consensus       149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv  190 (439)
T PRK06936        149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190 (439)
T ss_pred             Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence            34689999 9999999999999999999999999999887653

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.36  E-value=9.7e-08  Score=78.74  Aligned_cols=31  Identities=16%  Similarity=0.395  Sum_probs=29.9

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEee
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFK   52 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~   52 (80)
                      ..|+++||+|++|++++|+|+||||||||++
T Consensus       609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~  639 (1809)
T PRK00635        609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN  639 (1809)
T ss_pred             CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence            4799999999999999999999999999998

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.36  E-value=7.5e-08  Score=61.65  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=26.2

Q ss_pred             ceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      |++++|+|||||||||+++.|+..+.+. |.+.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~   33 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF   33 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence            5688999999999999999998876543 44443

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.36  E-value=5e-08  Score=65.32  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=26.5

Q ss_pred             eeeeecccCCCceeEeeeeeceeec--CCCceee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYV   67 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i~~   67 (80)
                      ++||.|+||||||||++.|.+++.+  ..+.+.+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v   34 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL   34 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence            5799999999999999999998865  4455554

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd00879 Sar1 Sar1 subfamily

Probab=98.35  E-value=4e-08  Score=62.91  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=28.8

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +|+++++..++..+ +|+|++|||||||++.+.+
T Consensus         9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879           9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence            67888888777765 8999999999999999887

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.35  E-value=6.1e-08  Score=74.81  Aligned_cols=48  Identities=25%  Similarity=0.387  Sum_probs=39.1

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC--ceeeee
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMN   69 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G--~i~~~~   69 (80)
                      +++++.++.+++|++++++||||+||||++..|++.+....|  .|.+-.
T Consensus       173 ~il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit  222 (767)
T PRK14723        173 PVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT  222 (767)
T ss_pred             hhccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec
Confidence            356778888888999999999999999999999998766665  455543

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.35  E-value=9e-08  Score=71.21  Aligned_cols=52  Identities=19%  Similarity=0.323  Sum_probs=43.7

Q ss_pred             cCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeee---ceeecCCCceee
Q psy7220          15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYV   67 (80)
Q Consensus        15 ~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~---gl~~~~~G~i~~   67 (80)
                      ..++++..+++|+.+.+ ++.+++|.||+||||||+.+.|+   |+...+.|.+|-
T Consensus       266 A~~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR  320 (512)
T PRK13477        266 AVRCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYR  320 (512)
T ss_pred             EEEeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceeh
Confidence            34567888999999988 88999999999999999999998   666667776663

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.34  E-value=7.1e-08  Score=62.81  Aligned_cols=31  Identities=23%  Similarity=0.412  Sum_probs=24.7

Q ss_pred             eeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      +++|+|++|||||||.++|.+++  ..+.+.+-
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~   31 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVII   31 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEE
Confidence            47999999999999999999987  23444433

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK06820 type III secretion system ATPase; Validated

Probab=98.32  E-value=1.5e-07  Score=68.89  Aligned_cols=50  Identities=22%  Similarity=0.366  Sum_probs=41.7

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      +..+++.+ +.+.+|+.++|+|+||+|||||+++|++...++...+-.-|+
T Consensus       150 Gi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe  199 (440)
T PRK06820        150 GIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE  199 (440)
T ss_pred             CCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence            35799999 999999999999999999999999999988776544433333

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.30  E-value=7.6e-08  Score=66.43  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=27.1

Q ss_pred             eeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      +++|+|+||||||||++.|++++++..+.+..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~   32 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVIC   32 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEE
Confidence            47999999999999999999999877664443

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=98.30  E-value=1.1e-07  Score=60.62  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=26.9

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+++.++++.+| +.+|+||||+||||++.+|.-.+
T Consensus         9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L   43 (202)
T PF13476_consen    9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL   43 (202)
T ss_dssp             TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence            346777888776 88899999999999998886544

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.29  E-value=1.4e-07  Score=62.82  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=25.4

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .+=+++++.=..+.++.|+||||+|||||++.+.
T Consensus        17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             eEcceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence            3445555542223789999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00606 rad50 rad50

Probab=98.28  E-value=1.9e-07  Score=75.21  Aligned_cols=38  Identities=42%  Similarity=0.632  Sum_probs=31.9

Q ss_pred             eeeeeecccCCCceeEeeee----eceeecC-CCceeeeeccc
Q psy7220          35 ECFGLLGLNGAGKTTTFKML----TGAIKPT-SGNAYVMNHSI   72 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l----~gl~~~~-~G~i~~~~~~i   72 (80)
                      .+++|+|||||||||++.+|    .|..+|. .|.+.+.+..+
T Consensus        29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~   71 (1311)
T TIGR00606        29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKV   71 (1311)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCc
Confidence            48999999999999999998    5988885 68877766543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.27  E-value=2e-07  Score=73.43  Aligned_cols=33  Identities=18%  Similarity=0.361  Sum_probs=30.5

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeee
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l   54 (80)
                      ..|+++||+|++|++++|+|+||||||||++.+
T Consensus       623 ~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~  655 (943)
T PRK00349        623 NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET  655 (943)
T ss_pred             CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence            368999999999999999999999999999764

>cd04155 Arl3 Arl3 subfamily

Probab=98.26  E-value=1.6e-07  Score=59.02  Aligned_cols=36  Identities=39%  Similarity=0.518  Sum_probs=28.3

Q ss_pred             eeeeeecccCCCceeEeeeeece----eecCCC----ceeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA----IKPTSG----NAYVMNH   70 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl----~~~~~G----~i~~~~~   70 (80)
                      -.++|+|++|||||||++.+.+.    ..|+.|    .+.+++.
T Consensus        15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~   58 (173)
T cd04155          15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGF   58 (173)
T ss_pred             cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCE
Confidence            34889999999999999999996    456777    5555443

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.26  E-value=1.1e-07  Score=60.73  Aligned_cols=26  Identities=31%  Similarity=0.325  Sum_probs=23.3

Q ss_pred             ceeeeeecccCCCceeEeeeeeceee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      |++++|+|||||||||+++.|++..+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            67899999999999999999988653

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.25  E-value=1.9e-07  Score=61.51  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=27.1

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++++++.+| +.+|+||||+||||++.+|.-
T Consensus        11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~   43 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTI   43 (198)
T ss_pred             ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHH
Confidence            346677888777 778999999999999988863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR01069 mutS2 MutS2 family protein

Probab=98.23  E-value=1.4e-07  Score=72.87  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=34.9

Q ss_pred             Cccccce-----eeeeeccc-eeeeeecccCCCceeEeeeeece-eecCCC
Q psy7220          20 TKPAVNQ-----ISFGVGRG-ECFGLLGLNGAGKTTTFKMLTGA-IKPTSG   63 (80)
Q Consensus        20 ~~~vl~~-----isl~i~~g-~~~~iiG~nGsGKsTll~~l~gl-~~~~~G   63 (80)
                      .++++++     +++.+..+ ++++|+||||+|||||++++++. +.+..|
T Consensus       302 rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G  352 (771)
T TIGR01069       302 RHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG  352 (771)
T ss_pred             cCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence            3455543     78888877 89999999999999999999887 445555

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.23  E-value=2.4e-07  Score=60.86  Aligned_cols=27  Identities=26%  Similarity=0.385  Sum_probs=24.9

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++.+++|.|++|||||||.+.|++.+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999999877

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.22  E-value=1.6e-07  Score=61.45  Aligned_cols=42  Identities=24%  Similarity=0.372  Sum_probs=34.6

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceeecC-CCceeeeecccc
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIR   73 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~~i~   73 (80)
                      +++.+++|+|++||||||+.+.|.+.+.+. .|.+.+++.++.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~   64 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR   64 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence            688999999999999999999999876543 457888876543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.22  E-value=1.8e-07  Score=64.81  Aligned_cols=42  Identities=21%  Similarity=0.313  Sum_probs=34.7

Q ss_pred             ceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      +.+...+. +++++++|+||+|||||++.|.|...+..|++..
T Consensus       153 ~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~  194 (287)
T cd01854         153 DELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE  194 (287)
T ss_pred             HHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence            34444454 4889999999999999999999999888888864

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0066|consensus

Probab=98.21  E-value=3.9e-07  Score=67.81  Aligned_cols=67  Identities=21%  Similarity=0.285  Sum_probs=55.3

Q ss_pred             hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeec--eeecCCCceeeeeccc
Q psy7220           6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSI   72 (80)
Q Consensus         6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g--l~~~~~G~i~~~~~~i   72 (80)
                      -.++.+.+.+.+..++.++.+.|+.|-.|..+|++||||-|||||++.|+.  +-.|..=++.++.+.+
T Consensus       262 a~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv  330 (807)
T KOG0066|consen  262 AMDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV  330 (807)
T ss_pred             cccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee
Confidence            457778888888888999999999999999999999999999999998863  2234556777777664

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.19  E-value=2.6e-07  Score=56.30  Aligned_cols=21  Identities=38%  Similarity=0.714  Sum_probs=19.5

Q ss_pred             eeeecccCCCceeEeeeeece
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++|+|++|||||||++.+.+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            579999999999999999886

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.18  E-value=3.2e-07  Score=63.84  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=31.8

Q ss_pred             cceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      +|.+++++|+||+|||||++.|.+...+..|++..
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~  197 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE  197 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence            58899999999999999999999998888888875

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.17  E-value=3.5e-07  Score=61.40  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=34.3

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ...+-++++|+.++++++.|.|||++||||+++.++..
T Consensus        16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~   53 (218)
T cd03286          16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA   53 (218)
T ss_pred             CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence            45788999999999999999999999999999988754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.12  E-value=4.5e-07  Score=64.83  Aligned_cols=28  Identities=18%  Similarity=0.290  Sum_probs=25.6

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +++..+.|+||+||||||++++|.+.+.
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4788999999999999999999998874

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.11  E-value=3.6e-07  Score=63.51  Aligned_cols=40  Identities=28%  Similarity=0.404  Sum_probs=35.8

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      ..+++++++...++.+++|+|++|||||||+..+......
T Consensus        21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~   60 (300)
T TIGR00750        21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRR   60 (300)
T ss_pred             HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999988876543

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.11  E-value=2.2e-07  Score=59.36  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=28.7

Q ss_pred             ceeeeeecccCCCceeEeeeee---ceeecCCCceee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYV   67 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~---gl~~~~~G~i~~   67 (80)
                      -.+++|+|++||||||+++.|+   |+..++.|++..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~   39 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR   39 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence            4588999999999999999998   877777776654

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.11  E-value=5.9e-07  Score=57.39  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=0.0

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+|+|+|||||||++++|..+.
T Consensus         2 ~viiG~N~sGKS~il~ai~~~~   23 (303)
T PF13304_consen    2 NVIIGPNGSGKSNILEAIYFLF   23 (303)
T ss_dssp             ----------------------
T ss_pred             Cccccccccccccccccccccc
Confidence            5789999999999999998764

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.09  E-value=4e-07  Score=66.41  Aligned_cols=27  Identities=37%  Similarity=0.634  Sum_probs=24.6

Q ss_pred             eccceeeeeecccCCCceeEeeeeece
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +++|++++++||||+||||+++.|++.
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999988875

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.09  E-value=4.9e-07  Score=59.07  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             eeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      .++|+|++|+|||||+++|.|...++.|.+..+
T Consensus         3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~   35 (197)
T cd04104           3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTG   35 (197)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence            378999999999999999999877766665544

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.08  E-value=5.7e-07  Score=60.56  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=32.7

Q ss_pred             eeccceeeeeecccCCCceeE-eeeeeceeecCCCceeeee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTT-FKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTl-l~~l~gl~~~~~G~i~~~~   69 (80)
                      .+++|+++.|.|++||||||| ++++.++.++....+++..
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~   60 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST   60 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            379999999999999999999 6888887666555566653

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.08  E-value=7.1e-07  Score=58.59  Aligned_cols=25  Identities=40%  Similarity=0.521  Sum_probs=21.1

Q ss_pred             eeeeecccCCCceeEe-eeeeceeec
Q psy7220          36 CFGLLGLNGAGKTTTF-KMLTGAIKP   60 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll-~~l~gl~~~   60 (80)
                      .++|+|++|||||||+ +++.|..++
T Consensus        11 kv~liG~~g~GKTtLi~~~~~~~~~~   36 (215)
T PTZ00132         11 KLILVGDGGVGKTTFVKRHLTGEFEK   36 (215)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            4789999999999999 688887653

>KOG0065|consensus

Probab=98.08  E-value=1e-06  Score=71.07  Aligned_cols=54  Identities=31%  Similarity=0.428  Sum_probs=47.3

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec---CCCceeeeeccccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHSIRD   74 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~---~~G~i~~~~~~i~~   74 (80)
                      ..++++++.-+++|+.+.++||.|||||||+++|+|-.+-   ..|+|.++|++..+
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e  184 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKE  184 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccc
Confidence            3699999999999999999999999999999999997653   25699999987654

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=98.07  E-value=7.4e-07  Score=65.38  Aligned_cols=37  Identities=22%  Similarity=0.383  Sum_probs=34.0

Q ss_pred             eeeeeeccceeeeeecccCCCceeEeeeeeceeecCC
Q psy7220          26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS   62 (80)
Q Consensus        26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~   62 (80)
                      |.-+.+.+|++++|+|+||+|||||+++|++...++.
T Consensus       150 D~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d~  186 (442)
T PRK08927        150 NTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADADV  186 (442)
T ss_pred             eeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCE
Confidence            6778999999999999999999999999999887764

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.06  E-value=7.9e-07  Score=65.94  Aligned_cols=51  Identities=31%  Similarity=0.558  Sum_probs=37.8

Q ss_pred             ccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220          14 ETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA   65 (80)
Q Consensus        14 ~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i   65 (80)
                      ..++|+. ...|..+- ..++|.++||+|+||-||||.+++|+|.+.|.=|+.
T Consensus        80 ~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~  131 (591)
T COG1245          80 VVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY  131 (591)
T ss_pred             ceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC
Confidence            3555643 23333332 347899999999999999999999999999976643

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.06  E-value=5.8e-07  Score=57.49  Aligned_cols=38  Identities=29%  Similarity=0.354  Sum_probs=31.3

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceeecCCCcee-eee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-VMN   69 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~-~~~   69 (80)
                      ++|++++|+|++||||||+.+.|++.+.+..+.+. +++
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~   40 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG   40 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence            57899999999999999999999998866555555 444

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.03  E-value=9e-07  Score=67.10  Aligned_cols=45  Identities=20%  Similarity=0.169  Sum_probs=32.7

Q ss_pred             hhhhccccccCCCCCccccceeeeeeccce-eeeeecccCCCceeEeeee
Q psy7220           6 LQTVDSHLETFPYDTKPAVNQISFGVGRGE-CFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus         6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~-~~~iiG~nGsGKsTll~~l   54 (80)
                      |..+++.+....++.    +.++|...+++ ++.|.|+||+|||||++++
T Consensus         3 i~~l~l~nf~~~~~~----~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai   48 (650)
T TIGR03185         3 ILQLTLENFGPYRGR----QTFDLSPSSPKPIILIGGLNGAGKTTLLDAI   48 (650)
T ss_pred             ccEEEEeceEEEcCC----ceeeeecCCCCeEEEEECCCCCCHHHHHHHH
Confidence            344556665544443    46677777665 8889999999999999876

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.03  E-value=7.3e-07  Score=67.71  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=30.9

Q ss_pred             eeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      -+++|.||||||||||++.|.+++ |..|.|.+++..
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~  101 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYN  101 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEccee
Confidence            589999999999999999999987 567888887753

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=6.4e-07  Score=64.52  Aligned_cols=38  Identities=34%  Similarity=0.484  Sum_probs=33.1

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +++++.++.+++|++++|+||||+||||++..|+....
T Consensus       125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56777888899999999999999999999998887543

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=98.01  E-value=8.7e-07  Score=63.15  Aligned_cols=39  Identities=33%  Similarity=0.265  Sum_probs=33.0

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      -+..+..+.|.|++|||||||+++|.+.+++....+.+.
T Consensus       158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiE  196 (344)
T PRK13851        158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIE  196 (344)
T ss_pred             HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEEC
Confidence            456778899999999999999999999998877666654

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.01  E-value=8.8e-07  Score=58.23  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=27.2

Q ss_pred             eeeeecccCCCceeEeeeeeceeecC-CCceeeeecc
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHS   71 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~~   71 (80)
                      .+.|.||+||||||+++.|.+.+.+. .+.|...+.+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~   39 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP   39 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence            57899999999999999888777643 4565554433

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.01  E-value=6.3e-07  Score=65.76  Aligned_cols=38  Identities=24%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             eeeeeecccCCCceeEeeeeeceeecC---CCceeeeeccc
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSI   72 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i   72 (80)
                      -++||.|++|||||||.+.|.+++.+.   .+.|.+++..+
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL  253 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL  253 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence            678999999999999999999988765   56777777544

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.01  E-value=8.1e-07  Score=54.50  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=23.7

Q ss_pred             eeeecccCCCceeEeeeee--ceeecCCCc
Q psy7220          37 FGLLGLNGAGKTTTFKMLT--GAIKPTSGN   64 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~--gl~~~~~G~   64 (80)
                      ++++|++|+|||||++.|.  +..++.++.
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~   31 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKT   31 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCC
Confidence            6799999999999999999  666666655

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK15494 era GTPase Era; Provisional

Probab=98.00  E-value=1.2e-06  Score=61.93  Aligned_cols=50  Identities=16%  Similarity=0.325  Sum_probs=40.5

Q ss_pred             hhccccccCCCC-Cccccceeeeeeccce-------eeeeecccCCCceeEeeeeece
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGE-------CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~-------~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.+..+.++.|. ...+++.++++++.|+       .++|+|..++|||||++.|.|-
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~   75 (339)
T PRK15494         18 DTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE   75 (339)
T ss_pred             ccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence            344455555554 3568999999999999       9999999999999999988764

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.00  E-value=6.5e-07  Score=57.31  Aligned_cols=42  Identities=31%  Similarity=0.366  Sum_probs=33.1

Q ss_pred             eccceeeeeecccCCCceeEeeeeeceee-cCCCceeeeeccc
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVMNHSI   72 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~-~~~G~i~~~~~~i   72 (80)
                      .++|.++.+.|++||||||+.+.|...+. +..+.+.+++..+
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~   46 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL   46 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence            46788999999999999999999987664 4456677766444

>PRK09183 transposase/IS protein; Provisional

Probab=97.99  E-value=6.9e-07  Score=61.17  Aligned_cols=44  Identities=27%  Similarity=0.297  Sum_probs=34.1

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      .|.+++| +++|+.+.|+||+|+|||+|..+|.........++.+
T Consensus        92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~  135 (259)
T PRK09183         92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF  135 (259)
T ss_pred             HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            4667788 9999999999999999999999996544333235544

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=97.99  E-value=1.2e-06  Score=55.80  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=26.2

Q ss_pred             ceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ...++.+.++.+..|+|||||||||+++.+.-..
T Consensus        12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~   45 (162)
T cd03227          12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLAL   45 (162)
T ss_pred             eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4445555566799999999999999999875443

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=97.98  E-value=1.3e-06  Score=69.42  Aligned_cols=32  Identities=34%  Similarity=0.509  Sum_probs=27.4

Q ss_pred             eeeee---eccceeeeeecccCCCceeEeeeeece
Q psy7220          26 QISFG---VGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        26 ~isl~---i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .|+|+   +..+.+++|+|||||||||++.+|+..
T Consensus        19 ~idf~~~~l~~~~l~~I~G~tGaGKStildai~~a   53 (1047)
T PRK10246         19 KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLA   53 (1047)
T ss_pred             eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            68888   446899999999999999999988743

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.97  E-value=1.5e-06  Score=67.75  Aligned_cols=30  Identities=23%  Similarity=0.479  Sum_probs=22.2

Q ss_pred             eeeccceeeeeecccCCCceeEeee---eeceee
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKM---LTGAIK   59 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~---l~gl~~   59 (80)
                      +.+.+ .+++|+|||||||||++.+   +.|...
T Consensus        19 i~f~~-~~~~i~G~NGsGKS~ll~ai~~~lg~~~   51 (1179)
T TIGR02168        19 INFDK-GITGIVGPNGCGKSNIVDAIRWVLGEQS   51 (1179)
T ss_pred             EEecC-CcEEEECCCCCChhHHHHHHHHHHcCCc
Confidence            34444 4899999999999999955   555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.97  E-value=1.3e-06  Score=51.48  Aligned_cols=35  Identities=34%  Similarity=0.578  Sum_probs=27.3

Q ss_pred             ceeeeeecccCCCceeEeeeeeceeecCC-Cceeee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVM   68 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~~~~~-G~i~~~   68 (80)
                      +..+.|+||+|+||||+++.++....... +.++++
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~   37 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID   37 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence            56788999999999999999988776544 344443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG0063|consensus

Probab=97.97  E-value=2.6e-06  Score=63.00  Aligned_cols=58  Identities=36%  Similarity=0.608  Sum_probs=45.8

Q ss_pred             CCCCC-ccccceeeeeecccee-----eeeecccCCCceeEeeeeeceeecCCC------ceeeeecccc
Q psy7220          16 FPYDT-KPAVNQISFGVGRGEC-----FGLLGLNGAGKTTTFKMLTGAIKPTSG------NAYVMNHSIR   73 (80)
Q Consensus        16 ~~~~~-~~vl~~isl~i~~g~~-----~~iiG~nGsGKsTll~~l~gl~~~~~G------~i~~~~~~i~   73 (80)
                      +.|.+ +.-+.++.|.|..|++     +..+|.||.|||||+++++|.++|+.|      .|.+.-+.+.
T Consensus       343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkis  412 (592)
T KOG0063|consen  343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKIS  412 (592)
T ss_pred             eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccC
Confidence            44544 5677899999988864     778999999999999999999999887      5555555444

>TIGR00101 ureG urease accessory protein UreG

Probab=97.96  E-value=1.4e-06  Score=57.49  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=26.8

Q ss_pred             eeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      .++|+|++|||||||++.+.+.+++..+ +.+...+
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d   37 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITND   37 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCC
Confidence            5789999999999999999988776544 4443333

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PLN02165 adenylate isopentenyltransferase

Probab=97.96  E-value=1.2e-06  Score=62.41  Aligned_cols=42  Identities=17%  Similarity=0.169  Sum_probs=31.9

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceee---cCCCce-eeeecccc
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIK---PTSGNA-YVMNHSIR   73 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~---~~~G~i-~~~~~~i~   73 (80)
                      ++|.+++|+||+|||||||...|++.+.   .+.+++ .+.|.+|.
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIg   86 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKIT   86 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccc
Confidence            5788999999999999999999988754   345555 34555543

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.96  E-value=9.4e-07  Score=57.17  Aligned_cols=43  Identities=23%  Similarity=0.355  Sum_probs=27.0

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY   66 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~   66 (80)
                      -++.+.-.++ +++++++|++|+|||||++.|.+-.....|+|.
T Consensus        25 g~~~l~~~l~-~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is   67 (161)
T PF03193_consen   25 GIEELKELLK-GKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS   67 (161)
T ss_dssp             THHHHHHHHT-TSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred             CHHHHHHHhc-CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence            3333333333 489999999999999999999886544445443

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.94  E-value=3e-06  Score=66.91  Aligned_cols=29  Identities=24%  Similarity=0.478  Sum_probs=27.5

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEe
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll   51 (80)
                      =|+|||++|+++++++|.|+||||||||.
T Consensus        15 NLKni~v~iP~~~l~v~TGvSGSGKSSLa   43 (943)
T PRK00349         15 NLKNIDLDIPRDKLVVFTGLSGSGKSSLA   43 (943)
T ss_pred             cccccccccCCCceEEEecCCCCCchhHH
Confidence            37899999999999999999999999986

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.94  E-value=2.4e-06  Score=58.50  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             eeeeeccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220          27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG   63 (80)
Q Consensus        27 isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G   63 (80)
                      .=+.+.+|+.++|+|++|+|||||++.+........+
T Consensus         9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f   45 (249)
T cd01128           9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHP   45 (249)
T ss_pred             eecccCCCCEEEEECCCCCCHHHHHHHHHhccccccC
Confidence            3357889999999999999999999999987766543

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.93  E-value=3.2e-06  Score=66.65  Aligned_cols=29  Identities=24%  Similarity=0.455  Sum_probs=27.5

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEe
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll   51 (80)
                      =|+|||++||++++++|.|+||||||||.
T Consensus        11 NLKni~v~iP~~~l~v~TGvSGSGKSSLa   39 (924)
T TIGR00630        11 NLKNIDVEIPRDKLVVITGLSGSGKSSLA   39 (924)
T ss_pred             cccccccccCCCceEEEecCCCCCchhHH
Confidence            37899999999999999999999999986

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]

Probab=97.93  E-value=1.6e-06  Score=62.53  Aligned_cols=51  Identities=24%  Similarity=0.335  Sum_probs=39.0

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeec-CCCceeeeeccc
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI   72 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~~~~~i   72 (80)
                      .-+-+.++++.+++.+.|+||||+||||+|.++.-.+.+ .+|.+++....+
T Consensus        12 r~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~fid~~i~~~~ksl   63 (440)
T COG3950          12 RCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIYLRFKSL   63 (440)
T ss_pred             hhhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhhccceeecccchh
Confidence            345678888999999999999999999999888655443 345666655443

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.93  E-value=4.4e-07  Score=61.05  Aligned_cols=40  Identities=30%  Similarity=0.437  Sum_probs=33.4

Q ss_pred             ccccceeeeeeccce-eeeeecccCCCceeEeeeeeceeec
Q psy7220          21 KPAVNQISFGVGRGE-CFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        21 ~~vl~~isl~i~~g~-~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      +.++..++..++++. ++.|+||+|+||||+++.+.....+
T Consensus        29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~   69 (269)
T TIGR03015        29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ   69 (269)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence            468888888887766 8889999999999999998876654

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		8e-08
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		5e-07
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		4e-06
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		6e-06
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		7e-06
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		7e-06
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		7e-06
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		3e-05
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		3e-05
1g29_1	372	Malk Length = 372		4e-05
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		6e-05
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		8e-05
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		1e-04
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		1e-04
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		1e-04
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		1e-04
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-04
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-04
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		5e-04
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		5e-04
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		5e-04
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		5e-04
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		5e-04
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		6e-04
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		6e-04
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		6e-04
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		6e-04
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		6e-04

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
          K  +  ISF +  GE FGL+G NGAGKTTT ++++  IKP+SG   V   ++ +    VR
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 87

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 28/44 (63%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
          AV+ +SF V  GE   LLG +G GKTTT  ML G  KPTSG  Y
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 1  MLVTSLQTVD-SHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 59
          M VT +  ++ SHL  +    +  +N +S  +  GE   ++G NGAGK+T  ++LTG + 
Sbjct: 4  MAVTPVALLEASHLH-YHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62
Query: 60 PTSGNAYVMNHSI 72
          P+ G  +++  ++
Sbjct: 63 PSHGECHLLGQNL 75

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          +V  +SF +  GE  GLLG +G+GKTT  +++ G  +PT G+ ++    + D
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD 81

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 16  FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
           +P  +KP +  I+F         ++G NGAGK+T   +LTG + PTSG  Y
Sbjct: 675 YPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 725

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 16  FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
           +P  +KP +  I+F         ++G NGAGK+T   +LTG + PTSG  Y
Sbjct: 681 YPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 16  FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
           +P  +KP +  I+F         ++G NGAGK+T   +LTG + PTSG  Y
Sbjct: 681 YPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
          AVN+++  +  GE   LLG +G GKTTT +M+ G  +PT G  Y
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
          AVN+++  +  GE   LLG +G GKTTT +M+ G  +PT G  Y
Sbjct: 27 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 70

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          AV ++S  V  GE   LLG +G GKTTT +M+ G  +P+ G  Y+ +  + D
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          D   A+  I+  + RGE   +LG NG GK+T F+   G +KP+SG     N  I
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          AV  +S  +  GE   LLG +G GKTTT + + G  +PT G  Y+ ++ + D
Sbjct: 21 AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVAD 72

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 9   VDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
           VD    TF Y    KPA++ +SF + +G+   L+G +G+GK+T   + T      SG+  
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
Query: 67  VMNHSIRD 74
           +  H +RD
Sbjct: 402 LDGHDVRD 409

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
          K A+  +S  +  GEC  + G  G+GK+T  +++ G I+PTSG+
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 65

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
          K A+  +S  +  GEC  + G  G+GK+T  +++ G I+PTSG+
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 63

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
          A+N I+  +  GE   LLG +G+GK+T    + G  KPTSG  Y
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
          A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G  Y
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
          A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G  Y
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
          P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R S
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 72

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22  PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
           P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R S
Sbjct: 52  PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 102

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22  PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
           P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R S
Sbjct: 52  PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 102

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
          P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R S
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 84

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
          P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R S
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 72

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 31  VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           + +GE  G++G NG GKTT  KML G  +PT G
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 397

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 31  VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           + +GE  G++G NG GKTT  KML G  +PT G
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22  PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
           P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R S
Sbjct: 52  PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 102

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22  PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
           P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R S
Sbjct: 52  PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 102

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 22  PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 75
           P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G    + HS R S
Sbjct: 52  PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK---IKHSGRIS 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	6e-25
1sgw_A	214	Putative ABC transporter; structural genomics, P p	4e-24
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-16
1g6h_A	257	High-affinity branched-chain amino acid transport	1e-15
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	4e-14
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	4e-13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-12
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	4e-11
1ji0_A	240	ABC transporter; ATP binding protein, structural g	2e-12
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-12
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-09
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-12
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	6e-11
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	6e-12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-11
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-08
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	2e-10
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	5e-10
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	2e-09
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	3e-09
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	1e-08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	2e-08
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	4e-07
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-06
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	2e-06
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-06
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-06
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-05
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	3e-05
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	4e-05
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	6e-05
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	7e-05
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	8e-05
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	1e-04
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	1e-04
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-04
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-04
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	3e-04
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	6e-04
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	7e-04
2ged_A	193	SR-beta, signal recognition particle receptor beta	9e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 92.2 bits (230), Expect = 6e-25
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
             K  +  ISF +  GE FGL+G NGAGKTTT ++++  IKP+SG   V   ++ +   
Sbjct: 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH 84

Query: 78 LVR 80
           VR
Sbjct: 85 EVR 87

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 89.1 bits (222), Expect = 4e-24
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          YD KP + +I+  + +G      G NG GKTT  K ++  +KP  G        I  
Sbjct: 20 YD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK 75

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 70.3 bits (173), Expect = 2e-16
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
                K  + +IS+ + +G+ + L GLNGAGKTT   +L      TSG   +   
Sbjct: 28 GRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK 83

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 67.5 bits (166), Expect = 1e-15
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          A++ +S  V +G+   ++G NG+GK+T   ++TG +K   G  Y  N  I
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 63.7 bits (156), Expect = 4e-14
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 15 TFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
           + Y D   A+  I+  + RGE   +LG NG GK+T F+   G +KP+SG     N  I 
Sbjct: 14 NYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID 73

Query: 74 DS 75
           S
Sbjct: 74 YS 75

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 60.7 bits (148), Expect = 4e-13
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 15 TFPYDTKPAV-NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AY 66
           F Y  +  +  Q++F + +G+   +LG NG GK+T   +L G  +P  G         +
Sbjct: 11 GFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGF 70

Query: 67 V 67
          V
Sbjct: 71 V 71

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 59.6 bits (145), Expect = 2e-12
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 21  KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
              +      + +GE  G++G NG GKTT  KML G  +PT G
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 55.8 bits (135), Expect = 4e-11
 Identities = 16/51 (31%), Positives = 20/51 (39%)

Query: 15  TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 65
              Y     V      V  G   G++G NG GKTT  K+L G + P     
Sbjct: 98  VHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 58.6 bits (143), Expect = 2e-12
 Identities = 19/55 (34%), Positives = 25/55 (45%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          Y    A+  I   V RG+   L+G NGAGKTTT   + G ++   G        I
Sbjct: 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 58.8 bits (143), Expect = 4e-12
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 21  KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
              +      + +GE  G++G NG GKTT  KML G  +PT G
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 341

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 50.0 bits (120), Expect = 4e-09
 Identities = 15/46 (32%), Positives = 20/46 (43%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 60
             Y     V      V  G   G++G NG GK+T  K+L G + P
Sbjct: 28 VHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIP 73

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 58.9 bits (142), Expect = 4e-12
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 15  TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
            +P  +KP +  I+F         ++G NGAGK+T   +LTG + PTSG 
Sbjct: 680 QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 50.0 bits (119), Expect = 4e-09
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 15  TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 57
           +  Y  K  +N+    + R   +G+ G NG GK+T  + +   
Sbjct: 442 SLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG 484

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 58.5 bits (142), Expect = 5e-12
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 21  KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
              +N         E   ++G NG GKTT  K+L GA+KP  G
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG 407

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 55.0 bits (133), Expect = 6e-11
 Identities = 17/50 (34%), Positives = 21/50 (42%)

Query: 15  TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
           T  Y               G+  GL+G NG GK+T  K+L G  KP  G 
Sbjct: 84  THRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 57.6 bits (140), Expect = 6e-12
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--MNHSIRD 74
          K A+  +S  +  GEC  + G  G+GK+T  +++ G I+PTSG+           +
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE 75

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 57.3 bits (139), Expect = 1e-11
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 21  KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
              +   +     GE  G+LG NG GKTT  ++L G I    G+       + 
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS 333

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 15 TFPYDTKPAVNQISFGVGR-GECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 64
             Y              +     G+LG NG GKTT  K+L G I P  G+
Sbjct: 6  IHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          + ++  I+  V  GE   +LG NG+GKTT  + ++G + P SGN ++    +R 
Sbjct: 18 RFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK 69

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 52.6 bits (127), Expect = 5e-10
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +   P +N IS  +  GE   ++G +G GKTT  + L G  +P SG
Sbjct: 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 51.0 bits (123), Expect = 2e-09
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
          +++ +S  V  GE F +LG  GAGKT   +++ G   P SG
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 50.2 bits (121), Expect = 3e-09
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
             +  +S  V  GE   L+G NGAGK+T    + G +    G+       +  
Sbjct: 13 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEA 65

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 15 TFPYDTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           F   T+   A+N +S  V  G+ +G++G +GAGK+T  + +    +PT G+  V    +
Sbjct: 33 VFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 92

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 63
           +V  +SF +  GE  GLLG +G+GKTT  +++ G  +PT G
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 44.6 bits (106), Expect = 4e-07
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY----VMNH 70
           F      A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G  Y    ++  
Sbjct: 12 VFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS 71

Query: 71 SIRDSMD 77
          + +  + 
Sbjct: 72 NGKLIVP 78

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 15  TFPYDTK--PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           TF Y  +  PA+  I+  +  G+   L+G +G+GK+T   ++T       G+  +  H +
Sbjct: 348 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407

Query: 73  RD 74
           R+
Sbjct: 408 RE 409

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 15  TFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
            F Y   +  +  +SF V  G+   L+G +GAGK+T  ++L      +SG   +    I 
Sbjct: 60  HFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS 119

Query: 74  D 74
            
Sbjct: 120 Q 120

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 42.1 bits (100), Expect = 2e-06
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 15 TFPYDTKPAV-NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
           F YD    +   ISF           G +G GK+T F +L    +PT+G   +    I 
Sbjct: 8  DFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID 67

Query: 74 D 74
          +
Sbjct: 68 N 68

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 15  TFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           TF Y    KPA++ +SF + +G+   L+G +G+GK+T   + T      SG+  +  H +
Sbjct: 348 TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407

Query: 73  RD 74
           RD
Sbjct: 408 RD 409

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 67
          + F +G  +   LLG  GAGK+   +++ G +KP  G   +
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 13/72 (18%)

Query: 16  FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV- 67
           F     P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G        ++  
Sbjct: 46  FSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCS 105

Query: 68  -----MNHSIRD 74
                M  +I++
Sbjct: 106 QNSWIMPGTIKE 117

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 38.6 bits (91), Expect = 4e-05
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 15 TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           F Y  D+   ++ I+  + +GE  G++G +G+GK+T  K++     P +G   +  H +
Sbjct: 14 RFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73

Query: 73 RD 74
            
Sbjct: 74 AL 75

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 38.3 bits (90), Expect = 6e-05
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 15  TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           +F Y  +  P +  I+  + +GE    +G++G GK+T   ++      TSG   +  H+I
Sbjct: 346 SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 405

Query: 73  RD 74
           +D
Sbjct: 406 KD 407

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 37.9 bits (89), Expect = 7e-05
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 15/75 (20%)

Query: 15 TFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------A 65
          T  ++    P +  I+F + RG+   + G  GAGKT+   M+ G ++P+ G        +
Sbjct: 13 TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 72

Query: 66 YV------MNHSIRD 74
          +       M  +I++
Sbjct: 73 FCSQFSWIMPGTIKE 87

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 37.9 bits (89), Expect = 8e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 15  TFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
            F Y  +T P ++ ++F V  G    +LG  G+GK+T   ++   I P  G   V    +
Sbjct: 348 EFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407

Query: 73  RD 74
           R 
Sbjct: 408 RT 409

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 15 TFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------A 65
          TF +     P +N I+F +  G    ++G  G GK++    L   +    G+       A
Sbjct: 10 TFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVA 69

Query: 66 YV------MNHSIRD 74
          YV       N S+R+
Sbjct: 70 YVPQQAWIQNDSLRE 84

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 9/54 (16%)

Query: 15 TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKML------TGAIK 59
           F Y  +        I+F +  G    L+G  G+GK+T  K+L       G IK
Sbjct: 24 NFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK 77

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY----VMNH 70
          +    A+N I+  +  GE   LLG +G+GK+T    + G  KPTSG  Y     +  
Sbjct: 13 FGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE 69

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 6   LQTVDSHLE----TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 58
              +  +LE     F Y ++  V     ++  V  G+   L+G +G GK+TT +++    
Sbjct: 381 PDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440

Query: 59  KPTSGNAYVMNHSIRD 74
            P  G   +    IR 
Sbjct: 441 DPLDGMVSIDGQDIRT 456

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 15   TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
             F Y T+P++     +S  V +G+   L+G +G GK+T  ++L     P +G+ ++    
Sbjct: 1037 VFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096

Query: 72   IRD 74
            I+ 
Sbjct: 1097 IKQ 1099

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 15 TFPYDTKPAV---NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
          +F Y   P V     ++F +  G+   L+G NG+GK+T   +L    +PT G   +    
Sbjct: 23 SFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP 82

Query: 72 IRD 74
          +  
Sbjct: 83 LVQ 85

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 35.3 bits (82), Expect = 6e-04
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY----VMNHS 71
          +    AV ++S  V  GE   LLG +G GKTTT +M+ G  +P+ G  Y    ++   
Sbjct: 13 FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADP 70

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 35.3 bits (82), Expect = 7e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY----VMNH 70
          +    AVN+++  +  GE   LLG +G GKTTT +M+ G  +PT G  Y     + +
Sbjct: 21 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY 77

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 34.7 bits (80), Expect = 9e-04
 Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 4/30 (13%)

Query: 39 LLGLNGAGKTTTFKMLTG----AIKPTSGN 64
          + G   +GKT+   +LT         +   
Sbjct: 53 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEP 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.86
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.85
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.85
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.85
1g6h_A	257	High-affinity branched-chain amino acid transport	99.85
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.84
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.84
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.84
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.84
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.84
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.84
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.84
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.83
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.83
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.83
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.83
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.82
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.82
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.82
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.82
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.82
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.82
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.81
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.81
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.81
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.81
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.81
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.8
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.8
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.8
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.79
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.78
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.78
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.78
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.77
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.76
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.76
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.76
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.76
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.76
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.75
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.75
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.74
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.72
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.7
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.67
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.66
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.64
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.64
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.58
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.58
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.57
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.56
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.54
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.54
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.54
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.51
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.51
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.49
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.49
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.48
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.46
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.46
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.44
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.44
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.43
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.43
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.42
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.42
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.41
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.39
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.38
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.37
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.37
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.36
2og2_A	359	Putative signal recognition particle receptor; nuc	99.35
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.34
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.31
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.3
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.29
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.28
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.27
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.26
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.25
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.23
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.23
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.2
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.19
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.19
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.18
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.17
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.17
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.17
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.17
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.16
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.15
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.15
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.13
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.12
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.12
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.12
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.11
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.09
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.09
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.08
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.07
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.07
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.07
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.04
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.04
3kta_A	182	Chromosome segregation protein SMC; structural mai	99.03
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.02
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.01
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.0
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.0
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.99
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.96
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.92
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.92
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.9
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.9
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.89
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.88
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.88
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.87
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.87
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.87
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.86
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.86
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.86
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.86
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.86
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.86
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.85
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.85
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.84
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.84
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.83
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.81
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.8
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.8
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.8
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.79
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.79
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.79
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.78
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.77
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.77
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.74
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.74
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.73
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.72
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.72
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.71
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.66
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.64
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.63
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.62
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.61
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.6
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.58
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.56
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.56
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.54
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.51
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.47
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.46
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.46
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.43
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.39
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.39
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.38
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.38
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.38
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.37
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.36
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.36
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.35
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.33
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.33
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.31
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.3
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.29
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.27
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.26
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.26
3ice_A	422	Transcription termination factor RHO; transcriptio	98.18
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.12
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.11
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	98.04
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.03
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.02
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.02
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.01
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.01
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.98
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.96
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.96
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.95
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.94
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.93
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.92
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.91
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.9
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.9
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.89
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.88
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.86
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.85
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.84
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.82
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.82
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.81
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.8
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.78
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.77
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.76
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.74
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.73
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.69
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.69
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.67
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.66
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.66
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.65
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.65
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.57
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.56
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.55
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.52
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.51
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.49
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.49
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.48
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.47
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.44
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.43
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.43
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.42
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.41
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.38
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.35
1via_A	175	Shikimate kinase; structural genomics, transferase	97.35
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.35
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.33
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.32
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.32
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.32
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.32
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.31
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.31
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.3
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.29
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.29
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.27
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.26
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.24
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.18
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.17
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.16
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.15
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.14
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.12
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.11
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.11
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.1
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.09
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.09
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.09
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.08
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.08
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.07
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.07
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.07
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.07
3bos_A	242	Putative DNA replication factor; P-loop containing	97.05
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.04
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.04
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.03
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.02
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.02
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.01
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.01
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.01
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.01
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.01
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.01
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.01
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.01
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	97.0
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.99
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.99
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.98
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.98
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.98
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.96
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.96
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.94
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.94
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.94
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.93
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.93
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.93
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.92
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.92
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.92
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.91
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.91
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.9
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	96.89
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.89
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.89
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.89
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.88
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.88
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.87
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.87
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.87
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.87
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.86
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.85
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.85
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.84
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.84
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.84
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.84
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.83
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.83
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.82
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.82
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.82
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.81
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.8
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.79
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.77
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.77
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.77
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.77
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.76
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.76
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.76
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.76
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.76
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.75
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.75
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.75
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.73
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.73
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.73
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.72
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.71
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.7
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.7
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.7
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.7
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.69
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.69
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.68
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.68
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.68
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.68
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.68
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.67
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.7
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.67
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.67
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.66
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.66
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.65
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.64
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.64
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.64
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.64
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.63
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.63
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.63
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.62
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.62
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.61
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.61
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.61
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.61
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.61
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.6
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.6
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.6
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.6
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.6
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.59
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.58
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.57
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.57
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.56
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.56
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.56
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.55
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.55
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.55
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.55
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.55
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.54
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.54
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.53
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.53
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.51
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.51
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.51
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.5
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.5
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.49
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.49
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.49
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.49
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.48
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.48
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.47
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.47
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.46
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.45
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.45
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.44
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.44
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.42
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.41
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.41
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.4
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.4
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.4
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.4
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.4
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.36
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.35
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.33
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.3
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.28
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.28
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.24
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.23
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.22
3pvs_A	447	Replication-associated recombination protein A; ma	96.2
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.19
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.19
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.19
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.17
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.17
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.14
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.12
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.12
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.11
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.09
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.09
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.04
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.01
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.01
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.97
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.96
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.95
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.93
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.92
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	95.92
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.92
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.89
3co5_A	143	Putative two-component system transcriptional RES	95.89
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.88
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.87
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.79
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.76
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.74
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.73
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	95.71
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.68
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.67
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.6
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.59
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	95.57
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.57
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.56
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.55
2qgz_A	308	Helicase loader, putative primosome component; str	95.53
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	95.51
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	95.47
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	95.41
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.4
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	95.39
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.39
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.38
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.36
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	95.36
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.35
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.34
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.34
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	95.33
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.31

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.86  E-value=1.1e-23  Score=142.78  Aligned_cols=68  Identities=24%  Similarity=0.551  Sum_probs=63.5

Q ss_pred             hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ..++++++++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus        10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~   77 (266)
T 4g1u_C           10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNS   77 (266)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTT
T ss_pred             ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence            35788889999999999999999999999999999999999999999999999999999999987653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.85  E-value=2.3e-23  Score=137.96  Aligned_cols=65  Identities=22%  Similarity=0.341  Sum_probs=60.7

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         5 l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   69 (224)
T 2pcj_A            5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVD   69 (224)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred             EEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence            56777888898889999999999999999999999999999999999999999999999998764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.85  E-value=3.1e-23  Score=138.50  Aligned_cols=66  Identities=29%  Similarity=0.474  Sum_probs=61.6

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   71 (240)
T 1ji0_A            6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT   71 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred             eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence            467788889998888999999999999999999999999999999999999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.85  E-value=4.2e-23  Score=140.78  Aligned_cols=65  Identities=32%  Similarity=0.562  Sum_probs=60.3

Q ss_pred             hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      .++++++++.|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus         7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i   72 (275)
T 3gfo_A            7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI   72 (275)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEEC
Confidence            4678888999965 4599999999999999999999999999999999999999999999999887

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.85  E-value=3.5e-23  Score=139.39  Aligned_cols=66  Identities=26%  Similarity=0.446  Sum_probs=61.7

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~   72 (257)
T 1g6h_A            7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT   72 (257)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred             EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence            367788899998889999999999999999999999999999999999999999999999998764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.84  E-value=5.1e-23  Score=139.12  Aligned_cols=66  Identities=20%  Similarity=0.332  Sum_probs=61.8

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~   71 (262)
T 1b0u_A            6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNIN   71 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred             eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcc
Confidence            477788899998889999999999999999999999999999999999999999999999998764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.84  E-value=1.4e-22  Score=135.34  Aligned_cols=65  Identities=26%  Similarity=0.492  Sum_probs=59.7

Q ss_pred             hccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.| +++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   67 (243)
T 1mv5_A            2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID   67 (243)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEEST
T ss_pred             EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence            4567778888 6678999999999999999999999999999999999999999999999998764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.84  E-value=6.1e-23  Score=139.16  Aligned_cols=66  Identities=18%  Similarity=0.308  Sum_probs=61.8

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus        24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~   89 (263)
T 2olj_A           24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK   89 (263)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence            477888899998889999999999999999999999999999999999999999999999998763

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.84  E-value=7.9e-23  Score=137.20  Aligned_cols=67  Identities=24%  Similarity=0.508  Sum_probs=61.7

Q ss_pred             hhhccccccCCC--CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           7 QTVDSHLETFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         7 ~~~~~~~~~~~~--~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      -+++++++++.|  +++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~   74 (247)
T 2ff7_A            6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA   74 (247)
T ss_dssp             EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred             CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence            367788899999  4678999999999999999999999999999999999999999999999998764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.84  E-value=8.1e-23  Score=138.04  Aligned_cols=67  Identities=37%  Similarity=0.539  Sum_probs=61.9

Q ss_pred             hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus        14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~   80 (256)
T 1vpl_A           14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV   80 (256)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred             CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence            3567788888898889999999999999999999999999999999999999999999999998764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.84  E-value=7.3e-23  Score=136.44  Aligned_cols=65  Identities=26%  Similarity=0.441  Sum_probs=58.5

Q ss_pred             hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|++    .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   70 (235)
T 3tif_A            2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTN   70 (235)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcc
Confidence            456777888863    46999999999999999999999999999999999999999999999998764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.84  E-value=1.1e-22  Score=138.74  Aligned_cols=66  Identities=27%  Similarity=0.359  Sum_probs=61.8

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus        21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~   86 (279)
T 2ihy_A           21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPG   86 (279)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC
T ss_pred             eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence            367788899998889999999999999999999999999999999999999999999999998764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.83  E-value=1.6e-22  Score=133.72  Aligned_cols=64  Identities=27%  Similarity=0.475  Sum_probs=59.6

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      .++++++++.|++ ++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus        10 ~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~   73 (214)
T 1sgw_A           10 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI   73 (214)
T ss_dssp             EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred             eEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEh
Confidence            4567788888988 999999999999999999999999999999999999999999999999775

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.83  E-value=2.8e-22  Score=136.10  Aligned_cols=66  Identities=24%  Similarity=0.419  Sum_probs=61.5

Q ss_pred             hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|++   +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus        16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~   84 (271)
T 2ixe_A           16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLV   84 (271)
T ss_dssp             CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred             eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            4778888999976   78999999999999999999999999999999999999999999999998764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.83  E-value=1.6e-22  Score=142.45  Aligned_cols=65  Identities=28%  Similarity=0.490  Sum_probs=61.6

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      .++++++++.|++.++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i   68 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI   68 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            46778889999999999999999999999999999999999999999999999999999999887

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.83  E-value=2.7e-22  Score=142.27  Aligned_cols=66  Identities=24%  Similarity=0.414  Sum_probs=61.9

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus         4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~   69 (381)
T 3rlf_A            4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND   69 (381)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred             EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCC
Confidence            677788999999999999999999999999999999999999999999999999999999987653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.82  E-value=2.3e-22  Score=134.88  Aligned_cols=65  Identities=26%  Similarity=0.350  Sum_probs=60.1

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece--eecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl--~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++.
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~   70 (250)
T 2d2e_A            4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL   70 (250)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred             EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence            5667778888888999999999999999999999999999999999998  7899999999998764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.82  E-value=7.2e-22  Score=138.96  Aligned_cols=66  Identities=30%  Similarity=0.547  Sum_probs=61.5

Q ss_pred             hhccccccCCC-CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~-~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.| +++++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus        14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~   80 (355)
T 1z47_A           14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVT   80 (355)
T ss_dssp             EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECC
Confidence            46778889999 8888999999999999999999999999999999999999999999999998764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.82  E-value=5e-22  Score=134.40  Aligned_cols=65  Identities=28%  Similarity=0.526  Sum_probs=58.5

Q ss_pred             hccccccCCCC--C---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYD--T---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~--~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+  +   +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~   72 (266)
T 2yz2_A            3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK   72 (266)
T ss_dssp             EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred             EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECc
Confidence            45667778786  4   57999999999999999999999999999999999999999999999997763

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.82  E-value=6.2e-22  Score=139.38  Aligned_cols=65  Identities=38%  Similarity=0.520  Sum_probs=60.8

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~   68 (359)
T 2yyz_A            4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVN   68 (359)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECC
Confidence            56777888898889999999999999999999999999999999999999999999999998764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.82  E-value=8.3e-22  Score=138.86  Aligned_cols=65  Identities=29%  Similarity=0.491  Sum_probs=60.9

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~   68 (362)
T 2it1_A            4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT   68 (362)
T ss_dssp             EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECC
Confidence            56777888898888999999999999999999999999999999999999999999999998764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.82  E-value=5.2e-22  Score=134.48  Aligned_cols=66  Identities=23%  Similarity=0.333  Sum_probs=60.9

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece--eecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA--IKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl--~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+++++|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|+++.
T Consensus        20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~   87 (267)
T 2zu0_C           20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL   87 (267)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence            46788889999888999999999999999999999999999999999999  5789999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.81  E-value=1.2e-21  Score=129.99  Aligned_cols=62  Identities=27%  Similarity=0.488  Sum_probs=57.1

Q ss_pred             hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .++++++++.|+  ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus         6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g   69 (229)
T 2pze_A            6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG   69 (229)
T ss_dssp             EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS
T ss_pred             eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC
Confidence            366778888884  57899999999999999999999999999999999999999999999987

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.81  E-value=6.9e-22  Score=139.59  Aligned_cols=66  Identities=33%  Similarity=0.480  Sum_probs=61.2

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus         4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~   69 (372)
T 1g29_1            4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD   69 (372)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred             EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcc
Confidence            567778888888899999999999999999999999999999999999999999999999987643

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.81  E-value=5.8e-22  Score=137.02  Aligned_cols=67  Identities=25%  Similarity=0.437  Sum_probs=61.9

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++++++++.|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus        53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~  120 (306)
T 3nh6_A           53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQ  120 (306)
T ss_dssp             CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTS
T ss_pred             eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEccc
Confidence            477888999995 5789999999999999999999999999999999999999999999999988753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.81  E-value=1.1e-21  Score=130.85  Aligned_cols=61  Identities=21%  Similarity=0.470  Sum_probs=56.5

Q ss_pred             hccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           9 VDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         9 ~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      ++++++++.|+  ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus         4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g   66 (237)
T 2cbz_A            4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG   66 (237)
T ss_dssp             EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS
T ss_pred             EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence            56677788886  57899999999999999999999999999999999999999999999987

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.81  E-value=9e-22  Score=139.11  Aligned_cols=65  Identities=34%  Similarity=0.532  Sum_probs=61.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus        12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~   76 (372)
T 1v43_A           12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVT   76 (372)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECC
Confidence            67788899998888999999999999999999999999999999999999999999999998764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.80  E-value=1.2e-21  Score=138.42  Aligned_cols=66  Identities=26%  Similarity=0.430  Sum_probs=59.9

Q ss_pred             hhccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|+.    ..+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus        24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~   93 (366)
T 3tui_C           24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT   93 (366)
T ss_dssp             CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECS
T ss_pred             eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECC
Confidence            4677788888853    46999999999999999999999999999999999999999999999998875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.80  E-value=1.1e-21  Score=137.60  Aligned_cols=64  Identities=25%  Similarity=0.443  Sum_probs=59.5

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|+++ +++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus         2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~   65 (348)
T 3d31_A            2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT   65 (348)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence            4567788889887 999999999999999999999999999999999999999999999998764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.80  E-value=6e-22  Score=139.06  Aligned_cols=66  Identities=26%  Similarity=0.507  Sum_probs=60.8

Q ss_pred             hccccccCCCCCcc--ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~--vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|++++  +|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus         4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~   71 (353)
T 1oxx_K            4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS   71 (353)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred             EEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcc
Confidence            56677788888888  9999999999999999999999999999999999999999999999987643

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.79  E-value=4.9e-21  Score=129.24  Aligned_cols=65  Identities=22%  Similarity=0.385  Sum_probs=59.1

Q ss_pred             hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++++++++.|++   +++|+++||+|++|++++|+||||||||||+++|+|+++| +|+|.++|+++.
T Consensus        17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~   84 (260)
T 2ghi_A           17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVN   84 (260)
T ss_dssp             CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGG
T ss_pred             eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhh
Confidence            4677888998875   4699999999999999999999999999999999999987 899999998764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.78  E-value=7.1e-21  Score=127.40  Aligned_cols=62  Identities=24%  Similarity=0.386  Sum_probs=56.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|++  +|+++||++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus         2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~   63 (240)
T 2onk_A            2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT   63 (240)
T ss_dssp             CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence            456777888865  59999999999 999999999999999999999999999999999998764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.78  E-value=9.7e-21  Score=134.50  Aligned_cols=66  Identities=26%  Similarity=0.390  Sum_probs=60.9

Q ss_pred             hhccccccCCC--CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~--~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++++++++.|  ++.++|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus        19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~   86 (390)
T 3gd7_A           19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDS   86 (390)
T ss_dssp             CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTS
T ss_pred             eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCc
Confidence            57888899999  66789999999999999999999999999999999999998 89999999988653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.78  E-value=6.2e-21  Score=129.28  Aligned_cols=63  Identities=29%  Similarity=0.511  Sum_probs=57.3

Q ss_pred             hccccccCCCCC----ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDT----KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~----~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.|++    +++|+++||+++ |++++|+||||||||||+++|+|+. |++|+|.++|+++.
T Consensus         2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~   68 (263)
T 2pjz_A            2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVR   68 (263)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGG
T ss_pred             EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECc
Confidence            456677888876    789999999999 9999999999999999999999999 99999999997764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.77  E-value=1.4e-20  Score=126.69  Aligned_cols=59  Identities=29%  Similarity=0.543  Sum_probs=54.8

Q ss_pred             hccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220           9 VDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus         9 ~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      ++++++++.|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus         5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~   64 (253)
T 2nq2_C            5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV   64 (253)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             EEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            56777888888 788999999999999999999999999999999999999999999974

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.76  E-value=2.7e-20  Score=125.27  Aligned_cols=60  Identities=23%  Similarity=0.318  Sum_probs=53.2

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++++++.    ++|+++||++++||+++|+||||||||||+++|+|+++|+ |+|.++|+++.
T Consensus         5 l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~   64 (249)
T 2qi9_C            5 MQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLE   64 (249)
T ss_dssp             EEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGG
T ss_pred             EEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECC
Confidence            344455554    6999999999999999999999999999999999999999 99999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.76  E-value=4.9e-20  Score=135.11  Aligned_cols=66  Identities=33%  Similarity=0.576  Sum_probs=61.3

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++.+++++.|++  +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~  408 (582)
T 3b5x_A          341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR  408 (582)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhh
Confidence            4778888999974  68999999999999999999999999999999999999999999999998764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.76  E-value=6e-20  Score=134.68  Aligned_cols=67  Identities=27%  Similarity=0.593  Sum_probs=61.7

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++  +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus       339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~  407 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD  407 (578)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGG
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhh
Confidence            5778889999964  579999999999999999999999999999999999999999999999988754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.76  E-value=7e-20  Score=134.84  Aligned_cols=67  Identities=30%  Similarity=0.482  Sum_probs=62.1

Q ss_pred             hhccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.+++++.|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus       354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~  421 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK  421 (598)
T ss_dssp             CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred             eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhh
Confidence            5788899999964 679999999999999999999999999999999999999999999999988754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.76  E-value=7.5e-20  Score=134.52  Aligned_cols=67  Identities=28%  Similarity=0.491  Sum_probs=61.9

Q ss_pred             hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|+  ++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~  409 (587)
T 3qf4_A          341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT  409 (587)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG
T ss_pred             cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEccc
Confidence            577888999984  4689999999999999999999999999999999999999999999999998754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.75  E-value=5.2e-20  Score=134.96  Aligned_cols=67  Identities=25%  Similarity=0.466  Sum_probs=61.7

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|++  +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus       341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~  409 (582)
T 3b60_A          341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE  409 (582)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT
T ss_pred             cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccc
Confidence            4778888999973  689999999999999999999999999999999999999999999999988653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.74  E-value=1.3e-19  Score=124.33  Aligned_cols=60  Identities=25%  Similarity=0.490  Sum_probs=47.9

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .++++++++.  .+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus        40 ~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g   99 (290)
T 2bbs_A           40 SLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG   99 (290)
T ss_dssp             ------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS
T ss_pred             eEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence            3556666664  36799999999999999999999999999999999999999999999987

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.72  E-value=2.1e-20  Score=118.60  Aligned_cols=64  Identities=20%  Similarity=0.180  Sum_probs=57.8

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++..++++.|+++.+++++||++++|++++|+||||||||||+++|+|++ |++|+|.+++.++.
T Consensus         8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~   71 (158)
T 1htw_A            8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV   71 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred             cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence            44556677788888999999999999999999999999999999999999 99999999988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.70  E-value=1.4e-18  Score=136.74  Aligned_cols=67  Identities=24%  Similarity=0.411  Sum_probs=61.9

Q ss_pred             hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.+++++.|.+   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKT 1145 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTT
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhh
Confidence            5788899999954   369999999999999999999999999999999999999999999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.67  E-value=4.3e-18  Score=133.70  Aligned_cols=67  Identities=22%  Similarity=0.427  Sum_probs=61.4

Q ss_pred             hhccccccCCCCC---ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~---~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.+++++.|++   .++|+++||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++..
T Consensus       387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~  456 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT  456 (1284)
T ss_dssp             CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGG
T ss_pred             eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHh
Confidence            5778889999964   469999999999999999999999999999999999999999999999987653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.66  E-value=6.9e-18  Score=132.56  Aligned_cols=67  Identities=27%  Similarity=0.547  Sum_probs=61.3

Q ss_pred             hhccccccCCCCCc---cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~---~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++.+++++.|+++   ++|+++||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++..
T Consensus      1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp             CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTS
T ss_pred             cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEccc
Confidence            46778889999653   69999999999999999999999999999999999999999999999988753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.64  E-value=1.4e-17  Score=131.15  Aligned_cols=67  Identities=22%  Similarity=0.407  Sum_probs=61.9

Q ss_pred             hhccccccCCCC---CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYD---TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~---~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++.++++|.|+   +.++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.++|+++.+
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~  484 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRD  484 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchh
Confidence            578889999985   3579999999999999999999999999999999999999999999999988654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.64  E-value=8.1e-18  Score=129.99  Aligned_cols=61  Identities=36%  Similarity=0.618  Sum_probs=56.6

Q ss_pred             hccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220           9 VDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus         9 ~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      ++++++++.|++  +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|++++
T Consensus       672 L~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~  734 (986)
T 2iw3_A          672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE  734 (986)
T ss_dssp             EEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred             EEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence            677888888864  6799999999999999999999999999999999999999999999975

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.58  E-value=4.9e-17  Score=118.88  Aligned_cols=53  Identities=26%  Similarity=0.436  Sum_probs=49.2

Q ss_pred             ccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220          12 HLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA   65 (80)
Q Consensus        12 ~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i   65 (80)
                      +++++.|++. .+++++| +|++||+++|+||||||||||+++|+|+++|++|++
T Consensus        25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~   78 (538)
T 1yqt_A           25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD   78 (538)
T ss_dssp             CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence            5778889876 4899999 999999999999999999999999999999999996

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.58  E-value=5e-17  Score=120.45  Aligned_cols=53  Identities=28%  Similarity=0.433  Sum_probs=49.5

Q ss_pred             ccccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220          12 HLETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA   65 (80)
Q Consensus        12 ~~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i   65 (80)
                      +++++.|++. .+++++| ++++||+++|+||||||||||+++|+|+++|++|++
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~  148 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED  148 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred             CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence            6788888876 4999999 999999999999999999999999999999999996

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.57  E-value=1.8e-16  Score=116.11  Aligned_cols=62  Identities=24%  Similarity=0.245  Sum_probs=51.9

Q ss_pred             ccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          10 DSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +..++++.|++ ..++..+|++++||+++|+||||||||||+++|+|+.+|++|+|.+++..+
T Consensus       271 ~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i  332 (538)
T 3ozx_A          271 KWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL  332 (538)
T ss_dssp             EECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCE
T ss_pred             EEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeee
Confidence            33445555655 456777889999999999999999999999999999999999999877654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.56  E-value=3e-16  Score=114.08  Aligned_cols=53  Identities=25%  Similarity=0.175  Sum_probs=49.9

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ..+|+++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~   69 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG   69 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence            4689999999999 9999999999999999999999999999999999988753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.54  E-value=4.2e-16  Score=115.51  Aligned_cols=58  Identities=33%  Similarity=0.437  Sum_probs=50.9

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      ++..++++.|++ ..|+.++|++++||+++|+||||||||||+++|+|+.+|++|+|.+
T Consensus       358 l~~~~l~~~~~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~  415 (607)
T 3bk7_A          358 VEYPRLVKDYGS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW  415 (607)
T ss_dssp             EEECCEEEECSS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC
T ss_pred             EEEeceEEEecc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence            445566667765 3688999999999999999999999999999999999999999976

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.54  E-value=3.4e-16  Score=102.52  Aligned_cols=50  Identities=20%  Similarity=0.133  Sum_probs=32.8

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ..+..|+++||++++|++++|+||||||||||+++|+|++ |  |++.+ +.++
T Consensus         8 ~~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~   57 (218)
T 1z6g_A            8 HHHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSC   57 (218)
T ss_dssp             --------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCE
T ss_pred             cccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecc
Confidence            3456899999999999999999999999999999999988 5  99988 6554

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.54  E-value=3.9e-16  Score=114.15  Aligned_cols=58  Identities=33%  Similarity=0.414  Sum_probs=50.0

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      ++..++++.|++ ..++.++|++++||+++|+||||||||||+++|+|+.+|++|+|.+
T Consensus       288 l~~~~l~~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~  345 (538)
T 1yqt_A          288 VTYPRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW  345 (538)
T ss_dssp             EEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC
T ss_pred             EEEeeEEEEECC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence            444555666655 3688889999999999999999999999999999999999999976

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.51  E-value=4.8e-16  Score=111.54  Aligned_cols=62  Identities=21%  Similarity=0.319  Sum_probs=58.1

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      .++..++++.|+ +..+|+++ |.+.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+
T Consensus       131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~  193 (438)
T 2dpy_A          131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE  193 (438)
T ss_dssp             TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred             ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence            577788888887 67899999 999999999999999999999999999999999999999998

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.51  E-value=3.7e-16  Score=109.32  Aligned_cols=63  Identities=16%  Similarity=0.271  Sum_probs=57.8

Q ss_pred             hhccccccCCCC-CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220           8 TVDSHLETFPYD-TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus         8 ~~~~~~~~~~~~-~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      .++..++++.|+ +..+++++ |.|.+|++++|+|+||||||||+++|+|+.+|+.|.+.+.|++
T Consensus        45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~  108 (347)
T 2obl_A           45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER  108 (347)
T ss_dssp             STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred             CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence            567778888887 67899999 9999999999999999999999999999999999999998875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.49  E-value=1.8e-16  Score=109.65  Aligned_cols=57  Identities=14%  Similarity=0.193  Sum_probs=51.1

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      .++.+++++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++   +|+|...
T Consensus       101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~  157 (305)
T 2v9p_A          101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF  157 (305)
T ss_dssp             HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG
T ss_pred             eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE
Confidence            367778888887 78999999999999999999999999999999999998   7988653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.49  E-value=2.8e-16  Score=109.19  Aligned_cols=67  Identities=18%  Similarity=0.264  Sum_probs=60.6

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++..++++.|+.+.++++++|++++|++++|+|+||||||||+++|+|++.|+.|+|.+.+.++..
T Consensus        29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~   95 (337)
T 2qm8_A           29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   95 (337)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence            4677777888877889999999999999999999999999999999999999999999999877643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.48  E-value=7.9e-16  Score=106.75  Aligned_cols=50  Identities=24%  Similarity=0.269  Sum_probs=47.6

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      +++++++|.+++|++++|+||||||||||+++|+|+++|++|.|.+++.+
T Consensus       159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~  208 (330)
T 2pt7_A          159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE  208 (330)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred             HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence            47899999999999999999999999999999999999999999999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=4.7e-16  Score=102.10  Aligned_cols=47  Identities=21%  Similarity=0.048  Sum_probs=42.2

Q ss_pred             CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      +.|+++.+|+++    ++|++++|+||||||||||+++|+|+ +|++|+|..
T Consensus         8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~   54 (208)
T 3b85_A            8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR   54 (208)
T ss_dssp             CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE
T ss_pred             CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee
Confidence            356677899985    89999999999999999999999999 999999964

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.46  E-value=2.1e-15  Score=101.74  Aligned_cols=50  Identities=22%  Similarity=0.246  Sum_probs=46.4

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-CCceeeeecccc
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSIR   73 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~~i~   73 (80)
                      ++|++++  +++|++++|+||||||||||+++|+|+++|+ +|+|.+++.++.
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~   65 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE   65 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence            5899999  8999999999999999999999999999998 999999987753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.44  E-value=1.7e-15  Score=108.32  Aligned_cols=52  Identities=21%  Similarity=0.307  Sum_probs=47.2

Q ss_pred             ccccceeeeeeccce--------------------eeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          21 KPAVNQISFGVGRGE--------------------CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        21 ~~vl~~isl~i~~g~--------------------~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +.+++++||++++|+                    +++|+||||||||||+++|+|+.+|++|+|.+++.++
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~  107 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV  107 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC---
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeec
Confidence            468999999999999                    9999999999999999999999999999999988654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.44  E-value=3.1e-15  Score=108.48  Aligned_cols=63  Identities=19%  Similarity=0.171  Sum_probs=54.6

Q ss_pred             ccccccCCCCCccccceeee-eeccceeeeeecccCCCceeEeee--eeceeecCCCceeeeeccc
Q psy7220          10 DSHLETFPYDTKPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKM--LTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        10 ~~~~~~~~~~~~~vl~~isl-~i~~g~~~~iiG~nGsGKsTll~~--l~gl~~~~~G~i~~~~~~i   72 (80)
                      +.+.+.....+.++|++++| .+++|++++|+||||||||||+++  ++|+.+|++|.+++++++.
T Consensus        14 ~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~   79 (525)
T 1tf7_A           14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET   79 (525)
T ss_dssp             CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             cccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence            33444444566789999999 999999999999999999999999  7899999999999999763

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.43  E-value=4e-15  Score=102.32  Aligned_cols=52  Identities=19%  Similarity=0.347  Sum_probs=47.4

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+++++|++++|++++|+|||||||||+++.|+|+++|+.|+|.+.+.++.+
T Consensus        89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r  140 (302)
T 3b9q_A           89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  140 (302)
T ss_dssp             CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            3467899999999999999999999999999999999999999999987643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.43  E-value=5.7e-15  Score=109.55  Aligned_cols=52  Identities=33%  Similarity=0.568  Sum_probs=44.9

Q ss_pred             cccCCCCCc-cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220          13 LETFPYDTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA   65 (80)
Q Consensus        13 ~~~~~~~~~-~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i   65 (80)
                      ++++.|+.. ..+++++ .+++||+++|+||||||||||+++|+|+++|+.|+|
T Consensus        82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            456777654 4566666 689999999999999999999999999999999998

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.42  E-value=8.3e-16  Score=110.91  Aligned_cols=55  Identities=16%  Similarity=0.085  Sum_probs=47.7

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC-c-eeeee
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-N-AYVMN   69 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~-i~~~~   69 (80)
                      ++..++++.|      +++||++++|++++|+||||||||||+|+|+|+.+|++| + |++++
T Consensus       119 i~~~nl~~~y------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg  175 (460)
T 2npi_A          119 KYIYNLHFML------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL  175 (460)
T ss_dssp             HHHHHHHHHH------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred             hhhhhhhehh------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence            3444455544      379999999999999999999999999999999999999 8 99987

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.42  E-value=5e-15  Score=103.61  Aligned_cols=47  Identities=21%  Similarity=0.174  Sum_probs=44.9

Q ss_pred             cceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      +++++|.+++|++++|+||||||||||+++|+|+++|++|.|.+++.
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~  211 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV  211 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence            39999999999999999999999999999999999999999999874

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.41  E-value=2.6e-14  Score=106.15  Aligned_cols=46  Identities=26%  Similarity=0.406  Sum_probs=33.6

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEe---------------------eeeeceeecCCCce
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTF---------------------KMLTGAIKPTSGNA   65 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll---------------------~~l~gl~~~~~G~i   65 (80)
                      ...+|+++||+|++||+++|+||||||||||+                     +++.++..|+.|.+
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i   96 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAI   96 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEE
T ss_pred             CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccce
Confidence            45699999999999999999999999999998                     88888888884433

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.39  E-value=1.6e-14  Score=91.31  Aligned_cols=44  Identities=20%  Similarity=0.306  Sum_probs=38.9

Q ss_pred             eeeeeeccceeeeeecccCCCceeEee------------eeeceeecCCCceeeee
Q psy7220          26 QISFGVGRGECFGLLGLNGAGKTTTFK------------MLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        26 ~isl~i~~g~~~~iiG~nGsGKsTll~------------~l~gl~~~~~G~i~~~~   69 (80)
                      ++||++++||+++|+||||||||||++            .+.|+..++.|++.+.+
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~   56 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTG   56 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHH
Confidence            589999999999999999999999999            77788878777776655

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.38  E-value=1.5e-14  Score=95.73  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=26.0

Q ss_pred             CCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        17 ~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..+++++|+++||++++|++++|+||||||||||+++|++++
T Consensus         8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A            8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             ---------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            345678999999999999999999999999999999999965

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.37  E-value=5.2e-15  Score=101.29  Aligned_cols=61  Identities=16%  Similarity=0.178  Sum_probs=52.9

Q ss_pred             hccccccCCCCCccccceeeeee-------------------ccceeeeeecccCCCceeEeeeeeceee--cCCCceee
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGV-------------------GRGECFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYV   67 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i-------------------~~g~~~~iiG~nGsGKsTll~~l~gl~~--~~~G~i~~   67 (80)
                      +++.++++.|  .++++++++.+                   ++|++++|+|+||||||||+++|+|++.  |++|+|.+
T Consensus        38 i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v  115 (308)
T 1sq5_A           38 LSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL  115 (308)
T ss_dssp             CCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             cchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence            4556666666  47899999988                   8999999999999999999999999988  99999999


Q ss_pred             ---eecc
Q psy7220          68 ---MNHS   71 (80)
Q Consensus        68 ---~~~~   71 (80)
                         ++..
T Consensus       116 i~~d~~~  122 (308)
T 1sq5_A          116 ITTDGFL  122 (308)
T ss_dssp             EEGGGGB
T ss_pred             EecCCcc
Confidence               7654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.37  E-value=4.5e-14  Score=104.78  Aligned_cols=53  Identities=38%  Similarity=0.666  Sum_probs=45.7

Q ss_pred             ccccCCCCC-ccccceeeeeeccc-----eeeeeecccCCCceeEeeeeeceeecCCCc
Q psy7220          12 HLETFPYDT-KPAVNQISFGVGRG-----ECFGLLGLNGAGKTTTFKMLTGAIKPTSGN   64 (80)
Q Consensus        12 ~~~~~~~~~-~~vl~~isl~i~~g-----~~~~iiG~nGsGKsTll~~l~gl~~~~~G~   64 (80)
                      ....+.|.+ ..++++++|++++|     |+++|+||||||||||+++|+|+.+|++|+
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            334555654 46889999999999     679999999999999999999999999996

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.36  E-value=3.8e-14  Score=109.69  Aligned_cols=49  Identities=22%  Similarity=0.430  Sum_probs=44.6

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++...++++.|+++.+|+++||++++|++++|+||||||||||+++|+|
T Consensus       435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3555678888998999999999999999999999999999999999984

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.35  E-value=5.1e-14  Score=99.08  Aligned_cols=50  Identities=20%  Similarity=0.365  Sum_probs=46.3

Q ss_pred             ceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +.++|++++|++++|+|||||||||+++.|+|+++|+.|+|.+.+.++.+
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r  197 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  197 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence            46889999999999999999999999999999999999999999987643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.34  E-value=7e-14  Score=102.41  Aligned_cols=51  Identities=31%  Similarity=0.556  Sum_probs=40.8

Q ss_pred             ccCCCCCccccceeeeee-ccceeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220          14 ETFPYDTKPAVNQISFGV-GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA   65 (80)
Q Consensus        14 ~~~~~~~~~vl~~isl~i-~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i   65 (80)
                      .+++|+.. .++-..+.+ ++||+++|+||||||||||+++|+|+++|+.|++
T Consensus         5 ~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A            5 VIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             EEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             CceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            45566542 233344444 5999999999999999999999999999999998

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.31  E-value=1.8e-13  Score=89.41  Aligned_cols=38  Identities=24%  Similarity=0.106  Sum_probs=22.9

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeee-cee
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-GAI   58 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~-gl~   58 (80)
                      .+..+++||++++|++++|+|||||||||++++|+ +++
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            35678999999999999999999999999999999 988

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.30  E-value=1.5e-13  Score=100.32  Aligned_cols=50  Identities=18%  Similarity=0.187  Sum_probs=46.1

Q ss_pred             cceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      -+++||++++|++++|+|+||||||||+++|+|+++++.|+|.+.+.++.
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~  332 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF  332 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence            46899999999999999999999999999999999999999999876653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.29  E-value=9.9e-14  Score=99.13  Aligned_cols=62  Identities=16%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +++.++.+.|+...+|+++ +. ++|++++|+||||||||||+++|.++++|++|+|.+.+.++
T Consensus       144 ~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i  205 (418)
T 1p9r_A          144 LDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI  205 (418)
T ss_dssp             CCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred             CCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence            4555666666666788888 54 89999999999999999999999999999999999988775

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.28  E-value=1.4e-14  Score=96.45  Aligned_cols=59  Identities=22%  Similarity=0.186  Sum_probs=41.9

Q ss_pred             hhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220           6 LQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus         6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +..+++.++...++.       ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++
T Consensus         7 ~~~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A            7 FRSLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (227)
T ss_dssp             EEEEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred             eeEEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence            344566665554432       566666 89999999999999999999999999999999999876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.27  E-value=1.8e-13  Score=88.35  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=26.2

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .+++++  .++++|++++|+||||||||||+++|+|+++
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            467777  6899999999999999999999999999985

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.26  E-value=3.4e-13  Score=85.88  Aligned_cols=56  Identities=20%  Similarity=0.348  Sum_probs=36.9

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee-----ecCCCceee
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-----KPTSGNAYV   67 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~-----~~~~G~i~~   67 (80)
                      ++++++++.|+ .+++++  |.+++|..++|+|+||||||||++.|+|..     .|+.|.+.+
T Consensus         4 l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A            4 LNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             -------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred             hhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence            56677788886 367877  899999999999999999999999999988     778887664

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.25  E-value=2.5e-13  Score=97.55  Aligned_cols=51  Identities=25%  Similarity=0.335  Sum_probs=40.1

Q ss_pred             hhhhccccccCCCCCccccceeeeeecccee--eeeecccCCCceeEeeeeecee
Q psy7220           6 LQTVDSHLETFPYDTKPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus         6 ~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~--~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+.++... ++.|++.+ ++++||++++|++  ++|+||||||||||+++|+|+.
T Consensus        14 ~~~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           14 CRTVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             ---CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             CceEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            34555666 78888877 9999999999999  9999999999999999999984

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.23  E-value=1.2e-12  Score=97.12  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=31.5

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeee
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l   54 (80)
                      ..+|+++||+|++||+++|+||||||||||++++
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence            4589999999999999999999999999999764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.23  E-value=7.9e-14  Score=96.20  Aligned_cols=33  Identities=21%  Similarity=0.180  Sum_probs=31.6

Q ss_pred             eccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG   63 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G   63 (80)
                      +++|++++|+||||||||||+++|+|+++|..|
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G  119 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH  119 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence            899999999999999999999999999998876

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.20  E-value=6.9e-13  Score=89.38  Aligned_cols=52  Identities=17%  Similarity=0.172  Sum_probs=45.9

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC-ceeeeecc
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS   71 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~i~~~~~~   71 (80)
                      +.++|+++++.+++|++++|+||||||||||++.|++...|..| .+.+.+.+
T Consensus        21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e   73 (296)
T 1cr0_A           21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (296)
T ss_dssp             SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence            34689999999999999999999999999999999999999878 77665443

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.19  E-value=5.5e-13  Score=97.21  Aligned_cols=51  Identities=16%  Similarity=0.176  Sum_probs=47.2

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      ..+++++++.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            457889999999999999999999999999999999999999999998754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.18  E-value=1.6e-12  Score=82.01  Aligned_cols=41  Identities=22%  Similarity=0.249  Sum_probs=36.2

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      .+++|++++|+|||||||||++++|++.  +..|.|.+++.++
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~   45 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL   45 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence            5789999999999999999999999997  6789999987654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.17  E-value=1.7e-12  Score=82.59  Aligned_cols=32  Identities=28%  Similarity=0.395  Sum_probs=26.5

Q ss_pred             eeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220          28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        28 sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      |+++++|++++|+|||||||||++++|+|+.+
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            56788999999999999999999999999863

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.17  E-value=1.9e-12  Score=89.12  Aligned_cols=42  Identities=24%  Similarity=0.292  Sum_probs=39.3

Q ss_pred             cceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +|++++|+|||||||||++++|+|+++|+.|+|.+.+.++.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r  142 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR  142 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence            689999999999999999999999999999999999988643

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.17  E-value=6.2e-13  Score=92.93  Aligned_cols=38  Identities=24%  Similarity=0.412  Sum_probs=34.0

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +..++++++|++.+| +++|+|+||||||||+++|+++.
T Consensus        47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~   84 (415)
T 4aby_A           47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL   84 (415)
T ss_dssp             EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence            346899999999999 99999999999999999996554

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.17  E-value=1.3e-12  Score=89.43  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=22.3

Q ss_pred             ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeece-eecCCCceeeeecc
Q psy7220          12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA-IKPTSGNAYVMNHS   71 (80)
Q Consensus        12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl-~~~~~G~i~~~~~~   71 (80)
                      .++++.|+++.++++++|+|      +|+|+||+|||||++.|.|. ..|++| +.++|.+
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~   55 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEK   55 (301)
T ss_dssp             ----------------CEEE------EEEEETTSSHHHHHHHHHC----------------
T ss_pred             CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcc
Confidence            35678899999999999998      89999999999999999997 778878 6555543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.16  E-value=1.3e-12  Score=88.48  Aligned_cols=38  Identities=18%  Similarity=0.257  Sum_probs=23.8

Q ss_pred             eeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++|+||||||||||+++|+|+..|++|++.++|+++.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~   41 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIP   41 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccC
Confidence            47899999999999999999999999999999987653

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.15  E-value=1.6e-12  Score=85.65  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=36.3

Q ss_pred             eeeeccceeeeeecccCCCceeEeeeeeceeec--CCCceeeeeccc
Q psy7220          28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSI   72 (80)
Q Consensus        28 sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i~~~~~~i   72 (80)
                      .-..++|++++|+||||||||||+++|+|+.+|  ..|.+.+.+++.
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~   56 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP   56 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence            345789999999999999999999999999986  678998887654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.15  E-value=1.5e-12  Score=88.93  Aligned_cols=45  Identities=16%  Similarity=0.223  Sum_probs=32.0

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeeceeecCCCceee---eecccc
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIR   73 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~---~~~~i~   73 (80)
                      |++.+|++++|+||||||||||+++|+|+.+|+.|+|.+   +|+++.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t  211 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT  211 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CC
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCce
Confidence            456789999999999999999999999999999999999   777654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.13  E-value=3.4e-12  Score=88.69  Aligned_cols=45  Identities=22%  Similarity=0.254  Sum_probs=41.1

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ..++|++++|+|||||||||+++.|+|+++|+.|+|.+.+.++.+
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r  169 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR  169 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence            347899999999999999999999999999999999999988643

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.12  E-value=8.2e-13  Score=91.88  Aligned_cols=46  Identities=22%  Similarity=0.316  Sum_probs=42.6

Q ss_pred             ccceeeeeecc--ceeeeeecccCCCceeEeeeeeceeecCC----Cceeee
Q psy7220          23 AVNQISFGVGR--GECFGLLGLNGAGKTTTFKMLTGAIKPTS----GNAYVM   68 (80)
Q Consensus        23 vl~~isl~i~~--g~~~~iiG~nGsGKsTll~~l~gl~~~~~----G~i~~~   68 (80)
                      +.+.+++++++  ++.++|+|+||||||||+++|+|+++|+.    |+++++
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~  208 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF  208 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence            45679999999  99999999999999999999999999999    998874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.12  E-value=9.2e-13  Score=84.54  Aligned_cols=60  Identities=18%  Similarity=0.200  Sum_probs=47.8

Q ss_pred             cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCce--eeeecccc
Q psy7220          13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA--YVMNHSIR   73 (80)
Q Consensus        13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i--~~~~~~i~   73 (80)
                      ++.++++.....+..++..++|++++|+|+|||||||++++|++.+. ..|.+  ++++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A            4 NIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             ------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             CCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            45566677778888999999999999999999999999999999887 67888  88876653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.12  E-value=3.8e-12  Score=81.85  Aligned_cols=42  Identities=17%  Similarity=0.253  Sum_probs=34.7

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeec-------CCCceeeeecc
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-------TSGNAYVMNHS   71 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-------~~G~i~~~~~~   71 (80)
                      .+++|++++|+||||||||||+++|+|+..+       ..+.+++++.+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            6899999999999999999999999996544       33367777654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.11  E-value=2.8e-12  Score=82.98  Aligned_cols=37  Identities=30%  Similarity=0.291  Sum_probs=34.2

Q ss_pred             ceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      |++++|+||||||||||+++|+|+++ ++| +.++|.+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~   37 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT   37 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence            68999999999999999999999998 889 99988665

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.09  E-value=3.4e-12  Score=82.39  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=36.4

Q ss_pred             eccceeeeeecccCCCceeEeeeeeceeec---CCCceeeeeccc
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP---TSGNAYVMNHSI   72 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~---~~G~i~~~~~~i   72 (80)
                      .++|++++|+||||||||||+++|+|+++|   ..|.|.+++..+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            578999999999999999999999999986   467788777554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.09  E-value=1.6e-12  Score=96.09  Aligned_cols=62  Identities=19%  Similarity=0.380  Sum_probs=37.1

Q ss_pred             hhccccccCCCCC--cccccee----------eeeeccceeeeeecccCCCceeEeeeeeceeec-CCCceeeeeccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQI----------SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYVMNHSI   72 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~i----------sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~~~~~i   72 (80)
                      .++..+++..|+.  +++++.+          +++++.   ++|+||||||||||+++|+|+..| ++|.|.++|.++
T Consensus        10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i   84 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL   84 (608)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence            3556677777764  3455544          366665   999999999999999999999988 799999998875

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.08  E-value=9.8e-12  Score=95.13  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=33.5

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeee-eecee
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKM-LTGAI   58 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~-l~gl~   58 (80)
                      .|+++||+|++|++++|+|+||||||||++. |+|++
T Consensus       512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            6999999999999999999999999999997 77654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.07  E-value=4.3e-12  Score=89.17  Aligned_cols=48  Identities=23%  Similarity=0.258  Sum_probs=41.5

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecC-CCceeeeeccc
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHSI   72 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~~i   72 (80)
                      +|++++  +++|++++|+|||||||||++++|+++++|+ +|+|.+.+.++
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~  175 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI  175 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH
Confidence            555554  7899999999999999999999999999987 89998776554

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.07  E-value=1.6e-11  Score=87.84  Aligned_cols=50  Identities=18%  Similarity=0.058  Sum_probs=40.5

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG   63 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G   63 (80)
                      .+.+.++++.|+++.++++++|+|      +|+|+||+|||||+++|+|...+..|
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~   60 (418)
T 2qag_C           11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE   60 (418)
T ss_dssp             ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred             cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence            477788899999999999999998      89999999999999999998875433

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.07  E-value=2.3e-12  Score=86.62  Aligned_cols=50  Identities=22%  Similarity=0.369  Sum_probs=35.5

Q ss_pred             hhccccc-cCCC-CCccccceeeeeecc---ceeeeeecccCCCceeEeeeeece
Q psy7220           8 TVDSHLE-TFPY-DTKPAVNQISFGVGR---GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus         8 ~~~~~~~-~~~~-~~~~vl~~isl~i~~---g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+++.++ ++.| ++.++|+++||++++   |++++|+|++||||||+.++|++.
T Consensus        17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4677788 8888 778899999999999   999999999999999999999874

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.04  E-value=1e-11  Score=80.06  Aligned_cols=28  Identities=32%  Similarity=0.277  Sum_probs=23.8

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      ++|++++|+||||||||||+++|.|+++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5789999999999999999999999875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.04  E-value=4.4e-12  Score=87.65  Aligned_cols=45  Identities=9%  Similarity=0.109  Sum_probs=27.3

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeeceeecCCCceee---eecccc
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIR   73 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~---~~~~i~   73 (80)
                      +++.+|++++|+|+||+|||||+++|.|+.+|..|+|.+   .|+.+.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt  215 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTT  215 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------C
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccc
Confidence            678899999999999999999999999999999999998   666543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=99.03  E-value=1.7e-11  Score=76.98  Aligned_cols=39  Identities=18%  Similarity=0.319  Sum_probs=34.3

Q ss_pred             ceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCc
Q psy7220          25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN   64 (80)
Q Consensus        25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~   64 (80)
                      +++++++.+| +.+|+|||||||||++++|.+++.+..|.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~   56 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK   56 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence            6788999998 99999999999999999999887766554

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.02  E-value=1.9e-12  Score=89.09  Aligned_cols=66  Identities=20%  Similarity=0.216  Sum_probs=55.2

Q ss_pred             hhhccccccCCCCCccccceeeeeeccc-------eeeeeecccCCCceeEeeeeecee----ecCCCceeeeeccc
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRG-------ECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSI   72 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g-------~~~~iiG~nGsGKsTll~~l~gl~----~~~~G~i~~~~~~i   72 (80)
                      ..++.+++...+++..+++++++.+++|       +.+.|+||||+|||||++++++..    .+.+|.+..++.++
T Consensus        17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l   93 (334)
T 1in4_A           17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM   93 (334)
T ss_dssp             CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHH
T ss_pred             HHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHH
Confidence            3456667777888888999999999887       889999999999999999999987    77788877655443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.01  E-value=1.4e-11  Score=84.24  Aligned_cols=43  Identities=19%  Similarity=0.139  Sum_probs=33.9

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCCceee---eecccc
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV---MNHSIR   73 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~---~~~~i~   73 (80)
                      ++.+|++++|+||||||||||+++|. +.+|+.|+|.+   +|+.+.
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t  206 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTT  206 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CC
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCce
Confidence            45679999999999999999999999 99999999999   887654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.00  E-value=1.2e-11  Score=79.32  Aligned_cols=51  Identities=16%  Similarity=0.139  Sum_probs=44.5

Q ss_pred             ccccceeee-eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          21 KPAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        21 ~~vl~~isl-~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      .+.|+++.. .+++|++++|+||||||||||++.+++...+..|.+.+.+.+
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~   60 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE   60 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence            457788887 899999999999999999999999998888888888887654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.99  E-value=3.1e-11  Score=93.77  Aligned_cols=51  Identities=22%  Similarity=0.260  Sum_probs=40.1

Q ss_pred             hcccc-----ccCCC-CCccccceeeeeecc-------ceeeeeecccCCCceeEeeeeeceeec
Q psy7220           9 VDSHL-----ETFPY-DTKPAVNQISFGVGR-------GECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus         9 ~~~~~-----~~~~~-~~~~vl~~isl~i~~-------g~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      +++.+     +.+.| ++..++++++|++++       |++++|+||||||||||+|++ |++.+
T Consensus       751 l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~  814 (1022)
T 2o8b_B          751 LELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV  814 (1022)
T ss_dssp             EEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred             EEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence            45555     66667 667899999999987       899999999999999999999 88754

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.96  E-value=5.4e-11  Score=90.26  Aligned_cols=45  Identities=22%  Similarity=0.169  Sum_probs=39.2

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceee-cCCCcee
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAY   66 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-~~~G~i~   66 (80)
                      ++..++++++|+   |++++|+||||||||||+|+++|+.. ++.|.+.
T Consensus       564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v  609 (765)
T 1ewq_A          564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV  609 (765)
T ss_dssp             TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB
T ss_pred             CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee
Confidence            456789999999   99999999999999999999999874 6777653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.92  E-value=1.9e-11  Score=81.38  Aligned_cols=41  Identities=29%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             ccceeeeeecccCCCceeEeeeee---ceeecCCCcee--------eeeccc
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAY--------VMNHSI   72 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~---gl~~~~~G~i~--------~~~~~i   72 (80)
                      ++|++++|+|||||||||++++|+   |+..+++|.++        .+|.++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~   76 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI   76 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence            789999999999999999999999   99999999998        666655

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.92  E-value=2.1e-11  Score=82.33  Aligned_cols=54  Identities=19%  Similarity=0.145  Sum_probs=46.1

Q ss_pred             CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ..+....+++++++.+++|  ++|+||||||||||+++|++...+  +.+.+++.++.
T Consensus        28 ~~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~   81 (274)
T 2x8a_A           28 APVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELL   81 (274)
T ss_dssp             HHHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTC
T ss_pred             HHhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHH
Confidence            3456677999999999999  899999999999999999998765  68888887653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.90  E-value=6.3e-11  Score=80.93  Aligned_cols=62  Identities=18%  Similarity=0.118  Sum_probs=51.2

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +..+++++.|+...  ++++|+  +|++++++|+||+||||++..|++++.+..|++.+.+.+...
T Consensus        77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            44455666665543  778888  899999999999999999999999999989999998877654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.90  E-value=1.1e-10  Score=74.81  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=33.3

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .++-+..++.++|++++|+|+|||||||++++|++.+    |.+.+++.++.
T Consensus        17 ~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~   64 (200)
T 4eun_A           17 NLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFH   64 (200)
T ss_dssp             -----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGS
T ss_pred             hhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccc
Confidence            3444445667899999999999999999999999876    88888887653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.89  E-value=6e-11  Score=83.20  Aligned_cols=42  Identities=17%  Similarity=0.175  Sum_probs=35.3

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecC-CCceeeeecc
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT-SGNAYVMNHS   71 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~-~G~i~~~~~~   71 (80)
                      ...++++++|+||||||||||+++|+|+++|+ .|.|...+.+
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~  161 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP  161 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence            67888999999999999999999999999887 5666554443

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.88  E-value=1.8e-10  Score=89.00  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=33.0

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeee
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l   54 (80)
                      ...++++++|++++|++++|+|||||||||++|++
T Consensus       648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred             ceeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence            45688999999999999999999999999999999

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.88  E-value=1e-10  Score=73.95  Aligned_cols=37  Identities=30%  Similarity=0.437  Sum_probs=31.9

Q ss_pred             ceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      |++++|+|||||||||++++|++   +..|.+.+++.++.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~   38 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIIN   38 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchh
Confidence            68899999999999999999986   66788999876543

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.87  E-value=1.5e-11  Score=85.43  Aligned_cols=59  Identities=22%  Similarity=0.347  Sum_probs=47.7

Q ss_pred             ccccCCCCCccccceeeeeeccce------eeeeecccCCCceeEeeeeeceee--cCCCceeeeec
Q psy7220          12 HLETFPYDTKPAVNQISFGVGRGE------CFGLLGLNGAGKTTTFKMLTGAIK--PTSGNAYVMNH   70 (80)
Q Consensus        12 ~~~~~~~~~~~vl~~isl~i~~g~------~~~iiG~nGsGKsTll~~l~gl~~--~~~G~i~~~~~   70 (80)
                      +.+++.|++...+++++..+..+.      ++||+||||||||||+++|.+++.  |+.|.+.+-..
T Consensus        64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~  130 (321)
T 3tqc_A           64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITT  130 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEG
T ss_pred             HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEee
Confidence            344566778888999999888877      999999999999999999999987  45677555443

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.87  E-value=8.5e-11  Score=74.63  Aligned_cols=35  Identities=23%  Similarity=0.195  Sum_probs=28.8

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG   63 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G   63 (80)
                      +++++|++++|+|||||||||++++|+++..|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            36789999999999999999999999998855544

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.87  E-value=2.6e-10  Score=74.69  Aligned_cols=44  Identities=14%  Similarity=0.093  Sum_probs=37.6

Q ss_pred             eeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +-+...++|++++|.|+|||||||++++|+++    .|++.+.+++..
T Consensus        12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~   55 (230)
T 2vp4_A           12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVE   55 (230)
T ss_dssp             CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHH
T ss_pred             CccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHH
Confidence            34456689999999999999999999999997    688999887653

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.86  E-value=2.4e-10  Score=78.45  Aligned_cols=41  Identities=29%  Similarity=0.291  Sum_probs=36.4

Q ss_pred             ceeeeeecccCCCceeEeeeeecee--------ecCCCceeeeeccccc
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI--------KPTSGNAYVMNHSIRD   74 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~--------~~~~G~i~~~~~~i~~   74 (80)
                      =++++|+|+||||||||++.|.|+.        .|+.|+|.++|.++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~   52 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD   52 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECT
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhC
Confidence            3688999999999999999999986        7899999999987653

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.86  E-value=1.2e-10  Score=89.92  Aligned_cols=38  Identities=16%  Similarity=0.143  Sum_probs=34.9

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +..++++++|++++|++++|+||||||||||+|+++++
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            46789999999999999999999999999999998753

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.86  E-value=1.1e-10  Score=74.85  Aligned_cols=30  Identities=23%  Similarity=0.297  Sum_probs=26.2

Q ss_pred             eccceeeeeecccCCCceeEeeeeeceeec
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      .++|++++|+||||||||||+++|+|++.|
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~   32 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE   32 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            578999999999999999999999998764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.86  E-value=1.5e-11  Score=81.00  Aligned_cols=57  Identities=14%  Similarity=0.153  Sum_probs=46.3

Q ss_pred             ccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          12 HLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        12 ~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +++...|+...+++++++++++|  +.|+||||+|||||++++++...  .|.+.+++.++
T Consensus        29 ~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~   85 (254)
T 1ixz_A           29 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF   85 (254)
T ss_dssp             HHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred             HHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence            33444455667899999999999  88999999999999999999764  67888877554

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.86  E-value=2.2e-10  Score=87.28  Aligned_cols=39  Identities=15%  Similarity=0.153  Sum_probs=35.8

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +++.++++++|+ ++|++++|+||||||||||+|+++|+.
T Consensus       593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            456789999999 999999999999999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.86  E-value=3.1e-11  Score=79.52  Aligned_cols=38  Identities=26%  Similarity=0.246  Sum_probs=34.5

Q ss_pred             cceeeeeecccCCCceeEeeeee---ceeecCCCceeeeec
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYVMNH   70 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~---gl~~~~~G~i~~~~~   70 (80)
                      ++++++|+|||||||||++++|+   |+..++.|++.+++.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~   66 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI   66 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence            47899999999999999999999   999999999888753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.85  E-value=1.9e-10  Score=80.99  Aligned_cols=46  Identities=15%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceee-cCCCceeee
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVM   68 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~-~~~G~i~~~   68 (80)
                      .-++++++. .+|++++|+||||+|||||+++|+|+.. |..|+|.+.
T Consensus       204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~  250 (358)
T 2rcn_A          204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV  250 (358)
T ss_dssp             BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred             cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence            346677765 4799999999999999999999999999 999999886

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.85  E-value=1.8e-11  Score=81.94  Aligned_cols=56  Identities=14%  Similarity=0.153  Sum_probs=45.9

Q ss_pred             cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ++.+.|+...+++++++++++|  +.|+||||+|||||+++|++...  .|.+.+++.++
T Consensus        54 ~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~  109 (278)
T 1iy2_A           54 EIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF  109 (278)
T ss_dssp             HHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred             HHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence            3344455667899999999999  88999999999999999999764  68888877554

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.84  E-value=3.5e-10  Score=87.64  Aligned_cols=34  Identities=21%  Similarity=0.405  Sum_probs=31.8

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      ..|+++||+|++|++++|+|+||||||||++++.
T Consensus       638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            4699999999999999999999999999999864

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.84  E-value=3.8e-10  Score=87.08  Aligned_cols=31  Identities=19%  Similarity=0.398  Sum_probs=29.2

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEe
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll   51 (80)
                      ...|+++||+|++|++++|+|+||||||||+
T Consensus       597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence            3579999999999999999999999999997

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.83  E-value=3.5e-11  Score=76.82  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=31.3

Q ss_pred             eeeeeecccCCCceeEeeeeeceeecC---CCceeeeeccc
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSI   72 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~~~---~G~i~~~~~~i   72 (80)
                      ++++|+|+||||||||++.|.++++|+   .|.|.+++.++
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i   43 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD   43 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence            578999999999999999999999998   89999998774

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.81  E-value=5.4e-11  Score=82.37  Aligned_cols=64  Identities=19%  Similarity=0.155  Sum_probs=52.4

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      .++.....+.|+...+++++++.+.++.+++|+|++|+|||||++.|++.+.+..+++.+-+.+
T Consensus        30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d   93 (341)
T 2p67_A           30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   93 (341)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence            4455555566666789999999999999999999999999999999999887777777665443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=2.7e-10  Score=72.86  Aligned_cols=40  Identities=25%  Similarity=0.212  Sum_probs=24.1

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +...+++++||+++++.+++|+|++||||||+.+.|+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            3457999999999999999999999999999999998644

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.80  E-value=3.9e-10  Score=77.99  Aligned_cols=49  Identities=24%  Similarity=0.330  Sum_probs=45.2

Q ss_pred             ceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      ++++|+++++++++|+|+||+||||++..|++.+.+..|++.+.+.++.
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~  144 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF  144 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            6899999999999999999999999999999999998999999887764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.80  E-value=2.9e-10  Score=71.93  Aligned_cols=35  Identities=17%  Similarity=0.094  Sum_probs=28.8

Q ss_pred             cceeeeeecccCCCceeEeeeeeceeec-CCCceee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNAYV   67 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~-~~G~i~~   67 (80)
                      +|++++|+||||||||||+++|.+..++ ..|.+..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~   39 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH   39 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence            6899999999999999999999998753 3455543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.79  E-value=4.4e-10  Score=72.20  Aligned_cols=43  Identities=21%  Similarity=0.255  Sum_probs=37.7

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ..+++++++|+|+|||||||++++|++++++..|.+.+.+.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            3578999999999999999999999999988888888876553

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.79  E-value=2.5e-10  Score=79.55  Aligned_cols=51  Identities=18%  Similarity=0.337  Sum_probs=42.7

Q ss_pred             ccccee-eeeeccceeeeeecccCCCceeEeeeeecee--ecCC----Cc-eeeeeccc
Q psy7220          22 PAVNQI-SFGVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTS----GN-AYVMNHSI   72 (80)
Q Consensus        22 ~vl~~i-sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~--~~~~----G~-i~~~~~~i   72 (80)
                      +.|+.+ .+.+++|+++.|+||||||||||++.+++..  +|+.    |. +++++.+.
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            455555 6899999999999999999999999999987  6665    57 88887654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.79  E-value=1.9e-10  Score=72.25  Aligned_cols=36  Identities=28%  Similarity=0.370  Sum_probs=32.6

Q ss_pred             eeeeccceeeeeecccCCCceeEeeeeeceeecCCC
Q psy7220          28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG   63 (80)
Q Consensus        28 sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G   63 (80)
                      +|.+++|+.++|+||||+|||||++++++...|..|
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g   67 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG   67 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence            566788999999999999999999999999887777

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.78  E-value=4.4e-10  Score=79.50  Aligned_cols=52  Identities=19%  Similarity=0.297  Sum_probs=39.0

Q ss_pred             ehhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC
Q psy7220           5 SLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS   62 (80)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~   62 (80)
                      .+..++++++ ..|++..     .+++.++++++|+|||||||||++++|+++..+.+
T Consensus         3 ~i~~l~~~~~-~~~~~~~-----~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A            3 RLVGLELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             CEEEEEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             eeEEEEEeCE-EEECCce-----eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            4456677776 5665432     24567899999999999999999999999887654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.77  E-value=9.2e-10  Score=77.33  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=31.6

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ..++++++++++| +++|+|||||||||++++|.+
T Consensus        15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            4578999999999 999999999999999999987

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.77  E-value=3.2e-10  Score=72.46  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=25.8

Q ss_pred             eeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      +++|+||||||||||+++|+|++.     +.++|.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~   32 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFW   32 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEE
Confidence            578999999999999999999984     5555543

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.74  E-value=7.5e-10  Score=71.63  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=35.8

Q ss_pred             eeccceeeeeecccCCCceeEeeeeec--eeec-----CCCceeeeecc
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTG--AIKP-----TSGNAYVMNHS   71 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~g--l~~~-----~~G~i~~~~~~   71 (80)
                      .+++|++++|+||||||||||++.+++  +.++     ..|.+++++..
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            488999999999999999999999998  4554     56788888765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.74  E-value=8.3e-10  Score=68.64  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=33.7

Q ss_pred             cceeeeeecccCCCceeEeeeeeceeecCCC--ceeeeeccc
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSI   72 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G--~i~~~~~~i   72 (80)
                      +|+.++|+||||+|||||++++++...+ .|  .+++++.++
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~   75 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM   75 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh
Confidence            8999999999999999999999998876 57  677766544

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.72  E-value=7.4e-10  Score=79.12  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             cceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      -++++|+++.++.++|+|+||||||||+++|++..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            47999999999999999999999999999999983

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.72  E-value=1.3e-09  Score=74.66  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=27.6

Q ss_pred             eeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220          26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++++++.+| +.+|+|+|||||||++++|..+
T Consensus        17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l   47 (322)
T 1e69_A           17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV   47 (322)
T ss_dssp             CEEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred             CeEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence            567888888 9999999999999999999844

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.71  E-value=1.1e-09  Score=75.51  Aligned_cols=48  Identities=17%  Similarity=0.178  Sum_probs=42.2

Q ss_pred             eeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+++..+++++++|+|+|||||||++..|++.+.+..|++.+.+.+..
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~  143 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF  143 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence            456667899999999999999999999999999998889999876654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.66  E-value=8.1e-10  Score=81.30  Aligned_cols=43  Identities=23%  Similarity=0.290  Sum_probs=37.9

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCC-cee-eeeccc
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAY-VMNHSI   72 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~i~-~~~~~i   72 (80)
                      .+++|++++|+|+|||||||++++|++.+.|+.| ++. +++.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            6789999999999999999999999999999886 675 776554

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.64  E-value=2.5e-09  Score=66.63  Aligned_cols=37  Identities=16%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      .+|++++|+|+|||||||+++.|++.+    |.+.+++.++
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~   42 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL   42 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence            568999999999999999999998864    7777776554

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.63  E-value=7.5e-10  Score=81.50  Aligned_cols=57  Identities=16%  Similarity=0.172  Sum_probs=49.3

Q ss_pred             CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCC-Cceeeeeccc
Q psy7220          16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-GNAYVMNHSI   72 (80)
Q Consensus        16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~-G~i~~~~~~i   72 (80)
                      ..++...+++.+++.+.+|+.+.|+||||+|||||+++|+++.++.. |.+.+.+...
T Consensus        42 ~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~   99 (604)
T 3k1j_A           42 QVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE   99 (604)
T ss_dssp             HCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred             eEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence            34677889999999999999999999999999999999999998876 6676665543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.62  E-value=1.9e-09  Score=78.12  Aligned_cols=43  Identities=14%  Similarity=0.078  Sum_probs=36.5

Q ss_pred             eeeeccceeeeeecccCCCceeEeeeeeceeecCCCc--eeeeecc
Q psy7220          28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN--AYVMNHS   71 (80)
Q Consensus        28 sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~--i~~~~~~   71 (80)
                      +..+++|++++|+|+||||||||++.+++..++. |+  +++..++
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee  319 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE  319 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence            4489999999999999999999999999998875 65  5665544

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.61  E-value=1e-09  Score=77.55  Aligned_cols=44  Identities=18%  Similarity=0.188  Sum_probs=38.3

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      ..+++++++.+++|++++|+||||||||||+++|++..   .|.+..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~  199 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN  199 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence            36889999999999999999999999999999999853   565554

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.60  E-value=2.5e-09  Score=69.01  Aligned_cols=29  Identities=28%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceeec
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      ++|++++|+|||||||||+++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            58999999999999999999999988765

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.58  E-value=3.7e-09  Score=75.12  Aligned_cols=41  Identities=27%  Similarity=0.467  Sum_probs=36.1

Q ss_pred             eeccceeeeeecccCCCceeEeeeeec------------eeecCCCceeeeec
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTG------------AIKPTSGNAYVMNH   70 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~g------------l~~~~~G~i~~~~~   70 (80)
                      .+++|..++|+|+||+|||||+++|+|            ...|+.|.+.+.+.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~   68 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE   68 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence            567899999999999999999999999            56688898888763

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.56  E-value=2.5e-09  Score=67.70  Aligned_cols=38  Identities=21%  Similarity=0.183  Sum_probs=30.5

Q ss_pred             eeeeeecccCCCceeEeeeeeceeec-----------CCCceeeeeccc
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIKP-----------TSGNAYVMNHSI   72 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~~-----------~~G~i~~~~~~i   72 (80)
                      -.++|+|+||||||||++.+++...+           ..|++.++|+++
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   78 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   78 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence            36899999999999999999987654           457777776543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.56  E-value=4.2e-09  Score=68.79  Aligned_cols=31  Identities=16%  Similarity=0.222  Sum_probs=26.2

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +...+|++++|+||||||||||++.|.+.++
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3445899999999999999999999998765

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.54  E-value=7.6e-09  Score=72.31  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=29.8

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ..++++++++++| +++|+|||||||||++.+|+..
T Consensus        12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~a   46 (365)
T 3qf7_A           12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFA   46 (365)
T ss_dssp             TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCccceEEecCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            3456788999999 7889999999999999998733

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.51  E-value=3.9e-09  Score=67.33  Aligned_cols=47  Identities=21%  Similarity=0.141  Sum_probs=36.3

Q ss_pred             cccceeee-eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          22 PAVNQISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        22 ~vl~~isl-~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      +.|+.+.. .+++|++++|+|+||||||||++.+++  .+..+.++++..
T Consensus         7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~   54 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE   54 (220)
T ss_dssp             HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence            45666654 689999999999999999999999998  444445555543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.47  E-value=1e-08  Score=73.52  Aligned_cols=58  Identities=19%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             cccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          13 LETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        13 ~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+...|+...  ++++|+  ++++++++|++|+||||++..|++.+.+..+++.+.+.++.+
T Consensus        81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            4455565443  678887  899999999999999999999999999888999988776543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.46  E-value=1.3e-08  Score=69.53  Aligned_cols=41  Identities=24%  Similarity=0.248  Sum_probs=36.0

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceeecCCC-ceeeeeccc
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHSI   72 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~i~~~~~~i   72 (80)
                      ++|++++++|+||+||||++..|++.+.++.| ++.+-+.+.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            57899999999999999999999999988788 787766654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.46  E-value=1.1e-08  Score=70.03  Aligned_cols=58  Identities=17%  Similarity=0.069  Sum_probs=46.4

Q ss_pred             cccCCCCCccccce-eeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          13 LETFPYDTKPAVNQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        13 ~~~~~~~~~~vl~~-isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      .+...|+...  ++ ++++.+ +.+++++|++|+||||++..|++.+.+..+++.+.+.+..
T Consensus        79 ~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           79 ELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             HHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             HHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            3444455433  56 788876 9999999999999999999999999888889998777654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.43  E-value=2.1e-08  Score=71.28  Aligned_cols=42  Identities=26%  Similarity=0.330  Sum_probs=34.2

Q ss_pred             eeccceeeeeecccCCCceeEeee--eeceeecCCC-----ceeeeecc
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKM--LTGAIKPTSG-----NAYVMNHS   71 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~--l~gl~~~~~G-----~i~~~~~~   71 (80)
                      -|++|+++.|+||||||||||++.  +.++.+++.|     .+++++..
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            688999999999999999999994  4566666444     78887765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.39  E-value=2.7e-08  Score=69.17  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=35.6

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecccc
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR   73 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~   73 (80)
                      +++.+++|+|++|||||||++.|.+...+..|++.+.+.+..
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            357899999999999999999999998888888887766543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.39  E-value=1.2e-08  Score=64.54  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=28.3

Q ss_pred             eeeeecccCCCceeEeeeeeceee-----cC------CCceeeeeccc
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIK-----PT------SGNAYVMNHSI   72 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~-----~~------~G~i~~~~~~i   72 (80)
                      .++|+|+||+|||||++.++|...     |+      .|.+.++|.++
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   54 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   54 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence            578999999999999999998742     32      45677766543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.38  E-value=4.6e-09  Score=67.58  Aligned_cols=34  Identities=32%  Similarity=0.407  Sum_probs=29.4

Q ss_pred             ceeeeeecccCCCceeEeeeeecee---ecCCCceee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI---KPTSGNAYV   67 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~---~~~~G~i~~   67 (80)
                      +.+++|+|++||||||+.++|++.+   .++.|+++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence            4679999999999999999998765   677888876

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.38  E-value=1.5e-08  Score=63.49  Aligned_cols=40  Identities=35%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceeecCCC--ceeeeeccc
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHSI   72 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G--~i~~~~~~i   72 (80)
                      ++|++++|+|++||||||+.++|++.+++ .|  .+.+++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            46899999999999999999999987765 45  455565433

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.38  E-value=5e-08  Score=67.49  Aligned_cols=43  Identities=16%  Similarity=0.277  Sum_probs=32.7

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeec--eeecCCCcee
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAY   66 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g--l~~~~~G~i~   66 (80)
                      ..+|++++++++   .++|+|++|||||||++.|.|  ++++..|.+.
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT   68 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT   68 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence            468999999999   899999999999999999999  5566666553

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.37  E-value=1.8e-08  Score=72.89  Aligned_cols=35  Identities=26%  Similarity=0.435  Sum_probs=30.8

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ..++++++++.+| +.+|+|+|||||||++.+|..+
T Consensus        49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            3667899999999 9999999999999999998544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.36  E-value=3e-08  Score=66.29  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=27.4

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .+++|++++|+||||||||||++.+++...
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            578999999999999999999999998654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.36  E-value=2.3e-09  Score=78.27  Aligned_cols=49  Identities=20%  Similarity=0.232  Sum_probs=41.8

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      ...++.++++++ +|+.+.|+||||+|||||+++|++...+..+.+.+.+
T Consensus        95 ~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A           95 EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred             HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence            345678888888 8999999999999999999999999877777777665

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.35  E-value=1.9e-08  Score=62.27  Aligned_cols=27  Identities=30%  Similarity=0.338  Sum_probs=23.7

Q ss_pred             cceeeeeecccCCCceeEeeeeeceee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .+.+++|+|++||||||++++|++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            367899999999999999999998653

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.33  E-value=1.3e-08  Score=74.07  Aligned_cols=51  Identities=16%  Similarity=0.253  Sum_probs=42.3

Q ss_pred             CCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        18 ~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +.+..+++++++.+++|  +.|+||+|+|||||++++++...  .+.+++++.++
T Consensus        50 l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~  100 (499)
T 2dhr_A           50 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF  100 (499)
T ss_dssp             HHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred             hhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence            44556888999999999  88999999999999999998753  57777877654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.33  E-value=8e-09  Score=70.67  Aligned_cols=55  Identities=20%  Similarity=0.205  Sum_probs=44.7

Q ss_pred             ccccCCCCCccccceeeeeecccee--eeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220          12 HLETFPYDTKPAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIKPTSGNAY   66 (80)
Q Consensus        12 ~~~~~~~~~~~vl~~isl~i~~g~~--~~iiG~nGsGKsTll~~l~gl~~~~~G~i~   66 (80)
                      ..+...++...+++.++..++.|++  +.|.||+|+||||+++++++.+.+..+...
T Consensus        22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~   78 (340)
T 1sxj_C           22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNM   78 (340)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred             CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence            3444456777899999999999998  999999999999999999998765544433

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.31  E-value=6.4e-08  Score=63.68  Aligned_cols=46  Identities=13%  Similarity=0.128  Sum_probs=31.4

Q ss_pred             cccceeeeeec---cceeeeeecccCCCceeEeeeeeceeecCCCceeee
Q psy7220          22 PAVNQISFGVG---RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM   68 (80)
Q Consensus        22 ~vl~~isl~i~---~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~   68 (80)
                      .-|.+.++.+.   +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus        11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            45667777776   9999999999999999999999988776 5555543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.30  E-value=4.5e-08  Score=62.50  Aligned_cols=30  Identities=27%  Similarity=0.276  Sum_probs=26.9

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      -.++++.+++|+|++||||||+++.|++.+
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            357789999999999999999999998864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.29  E-value=6.9e-08  Score=59.87  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=22.5

Q ss_pred             eeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          27 ISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        27 isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++++.+| +.+|+|||||||||++.+|.
T Consensus        17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence            34445554 88999999999999999886

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.27  E-value=5.6e-08  Score=66.12  Aligned_cols=36  Identities=25%  Similarity=0.216  Sum_probs=26.8

Q ss_pred             eeeeecccCCCceeEeeeeec-eeecCCCceeeeecc
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG-AIKPTSGNAYVMNHS   71 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g-l~~~~~G~i~~~~~~   71 (80)
                      .+.|.||||+||||+++++++ +..|+.|.+.+++.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~   74 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ   74 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence            388999999999999999999 788888988877644

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.26  E-value=1.9e-08  Score=64.74  Aligned_cols=43  Identities=21%  Similarity=0.177  Sum_probs=36.3

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeeceeecCCC--ceeeeecc
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG--NAYVMNHS   71 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G--~i~~~~~~   71 (80)
                      +.+++|.++.|+|++||||||+.+.|...+.|..|  .+.+++..
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~   64 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   64 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence            55788999999999999999999999998876677  66676543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.26  E-value=4.8e-08  Score=63.05  Aligned_cols=48  Identities=29%  Similarity=0.334  Sum_probs=33.0

Q ss_pred             ccccee-eeeeccceeeeeecccCCCceeEee-eeeceeecCCCceeeee
Q psy7220          22 PAVNQI-SFGVGRGECFGLLGLNGAGKTTTFK-MLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        22 ~vl~~i-sl~i~~g~~~~iiG~nGsGKsTll~-~l~gl~~~~~G~i~~~~   69 (80)
                      +.|+.+ .--+++|+++.|+|+||+|||||+. ++....+...+.+++..
T Consensus        10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~   59 (247)
T 2dr3_A           10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL   59 (247)
T ss_dssp             TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            345554 5578999999999999999999954 44444444334444443

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.18  E-value=7.1e-08  Score=69.22  Aligned_cols=52  Identities=17%  Similarity=0.137  Sum_probs=43.8

Q ss_pred             hhccccccCCCCC-ccccc--------------eeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220           8 TVDSHLETFPYDT-KPAVN--------------QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus         8 ~~~~~~~~~~~~~-~~vl~--------------~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .+...++++.|.. +..++              |+.+.+.+|+.++|+|++|+|||||++.|++...
T Consensus       133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            4556677777754 66888              8999999999999999999999999999888653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.12  E-value=6.3e-08  Score=67.55  Aligned_cols=46  Identities=20%  Similarity=0.095  Sum_probs=34.4

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeec
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      +.+.++...++++.+.++++|+|      +|+|++|+|||||++.|.+...+
T Consensus        18 v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~   63 (361)
T 2qag_A           18 VGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY   63 (361)
T ss_dssp             ---CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred             EEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence            44455566667777888888876      89999999999999998775443

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.11  E-value=2.1e-07  Score=58.44  Aligned_cols=38  Identities=26%  Similarity=0.276  Sum_probs=31.8

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY   66 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~   66 (80)
                      +...+|.++.|+|++||||||+.+.|+..+.+..+.+.
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~   45 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE   45 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            44568899999999999999999999988776666654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=98.04  E-value=5.1e-07  Score=62.17  Aligned_cols=29  Identities=21%  Similarity=0.380  Sum_probs=22.6

Q ss_pred             eeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          26 QISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      +..+++.+| +.+|+|||||||||++.+|.
T Consensus        16 ~~~i~f~~~-~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEcCCCC-eEEEECCCCCCHHHHHHHHH
Confidence            344555554 78899999999999999763

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.03  E-value=5.6e-07  Score=58.12  Aligned_cols=28  Identities=18%  Similarity=0.294  Sum_probs=22.3

Q ss_pred             eeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          27 ISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        27 isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++.+.+ .+.+|+|||||||||++.+|.
T Consensus        17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence            3444555 488899999999999999875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.02  E-value=2.6e-07  Score=63.01  Aligned_cols=30  Identities=17%  Similarity=0.056  Sum_probs=27.0

Q ss_pred             eccceeeeeecccCCCceeEeeeeeceeec
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      -.++.+++|+|++|||||||.+.|.+++.+
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            357889999999999999999999998875

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.02  E-value=4.1e-07  Score=57.37  Aligned_cols=32  Identities=25%  Similarity=0.314  Sum_probs=25.6

Q ss_pred             eeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220          26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++|+..+++..++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888899999999999999999999988653

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.01  E-value=3.9e-07  Score=57.97  Aligned_cols=21  Identities=43%  Similarity=0.564  Sum_probs=19.9

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +++|+|++||||||+.++|++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.01  E-value=2.2e-07  Score=58.87  Aligned_cols=35  Identities=31%  Similarity=0.490  Sum_probs=30.6

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ..+++++++..++.. ++++|++|+|||||++.+.+
T Consensus        13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence            468899999988875 67999999999999998876

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.98  E-value=5.4e-07  Score=63.26  Aligned_cols=41  Identities=24%  Similarity=0.363  Sum_probs=34.3

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCCce-eeeec
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA-YVMNH   70 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i-~~~~~   70 (80)
                      -+++|+++.|.||+|||||||+..++....+..|.+ +++..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E   98 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE   98 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            478999999999999999999999998877777766 44443

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.96  E-value=3.5e-07  Score=57.50  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=19.7

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+++++++..++. .++++|++|+|||||++.+.+
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            4778899887776 578999999999999998876

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.96  E-value=1.6e-06  Score=67.11  Aligned_cols=29  Identities=17%  Similarity=0.410  Sum_probs=27.4

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEe
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll   51 (80)
                      =|+|||++||++++++|.|+||||||||.
T Consensus        13 NLkni~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           13 NLKNITVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             TCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred             ccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence            47899999999999999999999999985

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.95  E-value=5.2e-07  Score=64.03  Aligned_cols=36  Identities=17%  Similarity=0.399  Sum_probs=29.1

Q ss_pred             eeeeecccCCCceeEeeeeeceee------------cCCCceeeeecc
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIK------------PTSGNAYVMNHS   71 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~------------~~~G~i~~~~~~   71 (80)
                      .++|+|++|+|||||++.|.|...            +..|.+.++|++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~  229 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK  229 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence            689999999999999999988743            456777777754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.94  E-value=5.5e-07  Score=57.07  Aligned_cols=21  Identities=38%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +++|+|+|||||||+.+.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            589999999999999999987

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.93  E-value=1.1e-06  Score=61.15  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             eehhhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220           4 TSLQTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      ..+..+++++..       .+++..+++.+| +.+|+|+|||||||++.+|.
T Consensus         3 M~l~~L~l~nFr-------~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A            3 MILKEIRMNNFK-------SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEEEEEET-------TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             cEEeEEEEEccc-------cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            344555555522       234566666664 78899999999999998875

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.92  E-value=7.5e-07  Score=56.90  Aligned_cols=29  Identities=24%  Similarity=0.264  Sum_probs=24.8

Q ss_pred             eeccceeeeeecccCCCceeEeeeeecee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ...+|.+++|+||+||||||+.+.|...+
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            35688999999999999999999987654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.91  E-value=7.3e-07  Score=62.46  Aligned_cols=39  Identities=28%  Similarity=0.446  Sum_probs=28.2

Q ss_pred             ccee-eeeecccCCCceeEeeeeeceee-----------cCCCceeeeecc
Q psy7220          33 RGEC-FGLLGLNGAGKTTTFKMLTGAIK-----------PTSGNAYVMNHS   71 (80)
Q Consensus        33 ~g~~-~~iiG~nGsGKsTll~~l~gl~~-----------~~~G~i~~~~~~   71 (80)
                      .+-. ++|+|++|+|||||++.|++...           +..+.+.++|.+
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~  227 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK  227 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence            3444 88999999999999999998765           445677776643

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.90  E-value=2.2e-06  Score=65.86  Aligned_cols=30  Identities=27%  Similarity=0.402  Sum_probs=28.0

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEe
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll   51 (80)
                      .=|+||+++||.+.+++|.|.||||||||.
T Consensus        24 hNLkni~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           24 HNLKDISVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             TTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred             cCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence            358999999999999999999999999986

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.90  E-value=8.1e-07  Score=66.34  Aligned_cols=38  Identities=26%  Similarity=0.255  Sum_probs=29.8

Q ss_pred             eeeeccceeeeeecccCCCceeEeeeeeceeec--CCCce
Q psy7220          28 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNA   65 (80)
Q Consensus        28 sl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i   65 (80)
                      ++.++++..++|+|++|+|||||++.|.+...+  ..|+|
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            456789999999999999999999999866543  45666

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.89  E-value=7e-07  Score=63.58  Aligned_cols=40  Identities=33%  Similarity=0.546  Sum_probs=31.4

Q ss_pred             eeccceeeeeecccCCCceeEeeeeece-----------eecCCCceeeee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYVMN   69 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl-----------~~~~~G~i~~~~   69 (80)
                      .+..+..++|+|++|+|||||++.|++.           ..|..|.+.+.+
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            4567888999999999999999999987           455666666654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.88  E-value=9.7e-07  Score=54.74  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=22.8

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +++..++|+|++|+|||||++.+.+..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367889999999999999999998754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.86  E-value=1.1e-06  Score=55.74  Aligned_cols=25  Identities=20%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..+++|+|++||||||+.+.|+..+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.85  E-value=3.4e-07  Score=64.56  Aligned_cols=38  Identities=21%  Similarity=0.233  Sum_probs=33.5

Q ss_pred             cccceeeeeecccee--eeeecccCCCceeEeeeeeceee
Q psy7220          22 PAVNQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        22 ~vl~~isl~i~~g~~--~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .+++.+++.+++|+.  +.|+|++||||||+.++|++.+.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            477888899999998  99999999999999999987653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.84  E-value=1.3e-06  Score=59.34  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++.+++|+|++|+|||||++.|.|..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            345589999999999999999998863

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.82  E-value=4.5e-07  Score=60.55  Aligned_cols=50  Identities=24%  Similarity=0.305  Sum_probs=39.6

Q ss_pred             CCCCccccceeeeeeccc-----------eeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220          17 PYDTKPAVNQISFGVGRG-----------ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY   66 (80)
Q Consensus        17 ~~~~~~vl~~isl~i~~g-----------~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~   66 (80)
                      .++...+++.+...+..+           ..+.|+||+|+||||++++++....+..+.+.
T Consensus        19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~   79 (311)
T 4fcw_A           19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI   79 (311)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence            346777878787777765           57889999999999999999988766555443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.81  E-value=3.9e-06  Score=65.35  Aligned_cols=30  Identities=30%  Similarity=0.513  Sum_probs=27.8

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEe
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll   51 (80)
                      .=|+|||++||++++++|.|.||||||||.
T Consensus        32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             ccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence            348999999999999999999999999985

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.80  E-value=3.1e-06  Score=61.94  Aligned_cols=47  Identities=9%  Similarity=0.123  Sum_probs=38.0

Q ss_pred             ceeeeeeccceeeeeecccCCCceeEeeeeec--eeecCCCceeeeecc
Q psy7220          25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHS   71 (80)
Q Consensus        25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g--l~~~~~G~i~~~~~~   71 (80)
                      +.+.+++.++..+.|.|++||||||+++.|..  +..++.+++.+...+
T Consensus       158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD  206 (512)
T 2ius_A          158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID  206 (512)
T ss_dssp             CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred             CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence            36888999999999999999999999998865  455566777765544

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.78  E-value=1.2e-06  Score=54.19  Aligned_cols=23  Identities=39%  Similarity=0.569  Sum_probs=20.4

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -.++|+|++|+|||||++.+.+.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35889999999999999999873

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.77  E-value=2.1e-06  Score=56.76  Aligned_cols=40  Identities=23%  Similarity=0.220  Sum_probs=30.5

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      ..+.+..+.|+|++||||||+.+.|+..+.  .+.+.+++..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~   67 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS   67 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence            567788999999999999999999987543  2345555543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.76  E-value=2.1e-06  Score=53.45  Aligned_cols=24  Identities=38%  Similarity=0.457  Sum_probs=21.4

Q ss_pred             ccceeeeeecccCCCceeEeeeee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .+|.+++|+|++||||||+.+.|+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            367889999999999999999987

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.74  E-value=2.3e-06  Score=53.25  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|++|+|||||++.+.+..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998853

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.73  E-value=1.3e-06  Score=62.23  Aligned_cols=50  Identities=12%  Similarity=0.205  Sum_probs=40.9

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCC-ceeeeecc
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-NAYVMNHS   71 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G-~i~~~~~~   71 (80)
                      +.|+++...+++|+++.|.|++|+|||||+..++....+..| .+.+.+.+
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            578888888999999999999999999999988887665445 56665543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.69  E-value=2.8e-06  Score=52.05  Aligned_cols=24  Identities=38%  Similarity=0.506  Sum_probs=20.9

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      -.++|+|++|+|||||++.+.+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            358899999999999999998753

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.69  E-value=3e-06  Score=55.55  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=24.8

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .++.+++.+++|  +.|+||+|+||||+++++++...
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            455566666666  78999999999999999987653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.67  E-value=4.2e-06  Score=58.30  Aligned_cols=38  Identities=26%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      -+++|+++.|.|++|+|||||+..++.......+.+.|
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly   94 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF   94 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            57899999999999999999987776544444455544

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.66  E-value=4.6e-06  Score=59.93  Aligned_cols=40  Identities=25%  Similarity=0.193  Sum_probs=34.1

Q ss_pred             cceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      ++.+++++|++|+||||++..|+..+.+..+++.+-..++
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            5789999999999999999999998888778887755443

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.66  E-value=4.5e-06  Score=58.09  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=30.7

Q ss_pred             cceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      .+..+.|+|++||||||+++.+.....+..+.+.+.+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            5667889999999999999999887777777777654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.65  E-value=3.5e-06  Score=54.90  Aligned_cols=27  Identities=19%  Similarity=0.208  Sum_probs=23.2

Q ss_pred             eeccceeeeeecccCCCceeEeeeeec
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .-.++.+++|+|++||||||+.+.|++
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            346788999999999999999999985

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.57  E-value=5.2e-06  Score=50.72  Aligned_cols=22  Identities=23%  Similarity=0.055  Sum_probs=19.6

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +++|.|++||||||+.+.|+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.56  E-value=2.4e-06  Score=56.89  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=25.1

Q ss_pred             ceeeeeecccCCCceeEeeeee---ceeecCCCce
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNA   65 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~---gl~~~~~G~i   65 (80)
                      .-+++|.||+||||||+.+.|+   |+...+.|.+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~   43 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM   43 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence            4479999999999999999998   5444455544

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.55  E-value=4.6e-06  Score=53.10  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             eeeeeecccCCCceeEeeeeeceeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      .+++|+|++|||||||++.|.+.+++
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            47889999999999999999887654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.52  E-value=7.6e-06  Score=49.62  Aligned_cols=19  Identities=32%  Similarity=0.544  Sum_probs=17.7

Q ss_pred             eeeeecccCCCceeEeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l   54 (80)
                      +++|.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6889999999999999988

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.51  E-value=8.6e-06  Score=52.87  Aligned_cols=28  Identities=36%  Similarity=0.386  Sum_probs=22.9

Q ss_pred             eeeeecccCCCceeEeeeeeceeecCCC
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPTSG   63 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G   63 (80)
                      .++|+|++|+|||||++.|.|...+..+
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            5789999999999999999986654443

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.49  E-value=9e-06  Score=50.63  Aligned_cols=25  Identities=24%  Similarity=0.170  Sum_probs=21.9

Q ss_pred             ccceeeeeecccCCCceeEeeeeec
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +++.++.|.|++||||||+.+.|+.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4577899999999999999998865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.49  E-value=1.2e-05  Score=50.47  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ..+++|+|++||||||+.+.|+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            457999999999999999998763

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.48  E-value=8.5e-06  Score=50.51  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.0

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999999988753

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.47  E-value=8.6e-06  Score=50.29  Aligned_cols=24  Identities=25%  Similarity=0.249  Sum_probs=20.6

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457889999999999999988753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.44  E-value=2.3e-06  Score=54.26  Aligned_cols=24  Identities=38%  Similarity=0.674  Sum_probs=20.6

Q ss_pred             eeeeecccCCCceeEeeeeeceee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +++|.|++||||||+++.|...+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            578999999999999998876553

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.43  E-value=9.1e-06  Score=50.53  Aligned_cols=25  Identities=36%  Similarity=0.165  Sum_probs=21.9

Q ss_pred             eccceeeeeecccCCCceeEeeeee
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      ..++.++.|.|++||||||+.+.|+
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHH
Confidence            3467789999999999999999887

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.43  E-value=1.1e-05  Score=50.57  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=19.4

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +++|.|++||||||+.+.|+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            578999999999999999987

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.42  E-value=1.3e-05  Score=51.24  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=21.2

Q ss_pred             cceeeeeecccCCCceeEeeeeec
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+-+++|.|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.41  E-value=1.1e-05  Score=53.42  Aligned_cols=22  Identities=18%  Similarity=0.144  Sum_probs=19.4

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +++|+||+||||||+.+.|+..
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            5789999999999999988754

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.38  E-value=2.7e-06  Score=61.70  Aligned_cols=37  Identities=27%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ....++++++.+++|  +.|+||+|+|||||++++++..
T Consensus        37 ~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           37 DPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             CTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred             ChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence            334666777788888  7799999999999999998754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.35  E-value=1.6e-05  Score=52.82  Aligned_cols=24  Identities=42%  Similarity=0.576  Sum_probs=21.2

Q ss_pred             eeeeecccCCCceeEeeeeeceee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .++|+|++|||||||++.|.|...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            578999999999999999988643

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.35  E-value=1.3e-05  Score=49.61  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.5

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+.|+|++||||||+.+.|+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999998754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.35  E-value=2.1e-05  Score=53.13  Aligned_cols=26  Identities=31%  Similarity=0.305  Sum_probs=22.3

Q ss_pred             eccceeeeeecccCCCceeEeeeeec
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -..+..+.|.||+||||||+.+.|..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34577899999999999999998864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.33  E-value=1.7e-05  Score=49.79  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=22.5

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +|-+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999887643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.32  E-value=1.6e-05  Score=48.82  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.4

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3678999999999999998875

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.32  E-value=2.3e-05  Score=55.18  Aligned_cols=35  Identities=34%  Similarity=0.544  Sum_probs=27.3

Q ss_pred             eeeeeecccCCCceeEeeeeec-----------eeecCCCceeeee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG-----------AIKPTSGNAYVMN   69 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g-----------l~~~~~G~i~~~~   69 (80)
                      ..++|+|.+++|||||++.|++           ...|..|.+.+.+
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            4689999999999999999987           2345566666654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.32  E-value=1.7e-05  Score=51.01  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=17.4

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      +.|+||+|||||||++.|..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999987753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.32  E-value=1.9e-05  Score=49.60  Aligned_cols=27  Identities=26%  Similarity=0.557  Sum_probs=22.8

Q ss_pred             cceeeeeecccCCCceeEeeeeeceee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +|.+++|.|+.||||||+.+.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            466899999999999999999876443

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.31  E-value=1.8e-05  Score=49.22  Aligned_cols=24  Identities=38%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +..+.|+|++||||||+.+.|+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            557889999999999999988753

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.31  E-value=1.4e-05  Score=53.89  Aligned_cols=30  Identities=27%  Similarity=0.375  Sum_probs=25.9

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +.++++..+.|.||+|+||||+++++++..
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            346778889999999999999999998754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.30  E-value=1.9e-05  Score=49.18  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=22.0

Q ss_pred             ccceeeeeecccCCCceeEeeeeec
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++.+++|.|+.||||||+.+.|+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4667899999999999999998874

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.29  E-value=2.1e-05  Score=49.68  Aligned_cols=26  Identities=31%  Similarity=0.468  Sum_probs=22.7

Q ss_pred             ccceeeeeecccCCCceeEeeeeece
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+|.+++|.|+.||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46788999999999999999988753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.29  E-value=2.1e-05  Score=48.77  Aligned_cols=23  Identities=30%  Similarity=0.247  Sum_probs=20.0

Q ss_pred             ceeeeeecccCCCceeEeeeeec
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +.+++|.|+.||||||+.+.|+.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999988764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.27  E-value=8.9e-06  Score=50.87  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=23.4

Q ss_pred             eeccceeeeeecccCCCceeEeeeeece
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +++.+.+++|.|+.||||||+.+.|+..
T Consensus         8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A            8 DLRKCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HHHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3456778999999999999999988653

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.26  E-value=2.3e-05  Score=49.50  Aligned_cols=26  Identities=38%  Similarity=0.483  Sum_probs=22.7

Q ss_pred             ccceeeeeecccCCCceeEeeeeece
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+|-+++|.|+.||||||+.+.|+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            46788999999999999999988743

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.24  E-value=2.3e-05  Score=48.49  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++.|.|+.||||||+.+.|+..+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999887643

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.24  E-value=2.6e-05  Score=48.18  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=16.5

Q ss_pred             cceeeeeecccCCCceeEeeeeec
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++.++.|.|+.||||||+.+.|+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456889999999999999998864

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.17  E-value=2.6e-05  Score=50.71  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=21.2

Q ss_pred             eeccceeeeeecccCCCceeEeeee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l   54 (80)
                      .+.+|+.+.+.||+||||||++..+
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~   96 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQF   96 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHH
Confidence            4568999999999999999977654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.16  E-value=2.9e-05  Score=48.81  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=20.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +++|.|++||||||+.+.|+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7899999999999999999764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.15  E-value=2.6e-05  Score=52.68  Aligned_cols=29  Identities=24%  Similarity=0.431  Sum_probs=24.9

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceeec
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      ..+..+.|.||+|+|||||++.+++...+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34778999999999999999999887654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.14  E-value=4.5e-05  Score=51.71  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=18.4

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.-+++|.|++||||||+.+.|...
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988763

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.11  E-value=4.2e-05  Score=46.02  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=19.6

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++++|+.|+|||||++.+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            47899999999999999988754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.11  E-value=4.1e-05  Score=47.74  Aligned_cols=20  Identities=20%  Similarity=0.316  Sum_probs=17.0

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++|+|++|+|||||++.+.
T Consensus        22 ki~ivG~~~vGKSsL~~~~~   41 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYL   41 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999996544

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.10  E-value=3.6e-05  Score=48.95  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             eeeeecccCCCceeEeeeeeceeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      +++|+|++|||||||+..|...+..
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhHh
Confidence            6889999999999999888876543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.09  E-value=3.6e-05  Score=47.64  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=20.6

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      -.++++|+.|+|||||++.+.+-.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368899999999999999887653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.09  E-value=0.00015  Score=44.36  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=9.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999988754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.09  E-value=4.4e-05  Score=48.91  Aligned_cols=25  Identities=32%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++-++.|+|+.||||||+.+.|+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999988653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.08  E-value=4.3e-05  Score=49.28  Aligned_cols=25  Identities=28%  Similarity=0.255  Sum_probs=20.5

Q ss_pred             ccceeeeeecccCCCceeEeeeeec
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++.++.|.|+.||||||+.+.|+.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999998873

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.08  E-value=5.5e-05  Score=52.20  Aligned_cols=28  Identities=21%  Similarity=0.135  Sum_probs=25.1

Q ss_pred             eeccceeeeeecccCCCceeEeeeeece
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+++|+++.|.|++|+|||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999999877763

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.07  E-value=4.8e-05  Score=46.52  Aligned_cols=24  Identities=42%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             cceeeeeecccCCCceeEeeeeec
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +.-.++++|++|+|||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            344688999999999999988873

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.07  E-value=4.5e-05  Score=51.27  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.7

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|++|+|||||++.|+|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58899999999999999999853

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.07  E-value=4.9e-05  Score=47.08  Aligned_cols=29  Identities=48%  Similarity=0.598  Sum_probs=23.1

Q ss_pred             eeeeeecccCCCceeEeeeeecee----ecCCC
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI----KPTSG   63 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~----~~~~G   63 (80)
                      -.++++|++|+|||||++.+.+-.    .|+.|
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g   49 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQG   49 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence            458899999999999999988652    45555

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.07  E-value=4.3e-05  Score=48.59  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=18.4

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|.|+.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998854

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.05  E-value=4.7e-05  Score=48.30  Aligned_cols=28  Identities=14%  Similarity=0.111  Sum_probs=23.5

Q ss_pred             cceeeeeecccCCCceeEeeeeeceeec
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      .+..+.|.||+|+||||+++.++.....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5678889999999999999988765543

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.04  E-value=4.8e-05  Score=47.17  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +++|.|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999988753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.04  E-value=5.7e-05  Score=45.81  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=19.4

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.03  E-value=4.8e-05  Score=48.78  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=20.9

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3457889999999999999988643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.02  E-value=5e-05  Score=46.95  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             ceeeeeecccCCCceeEeeeeec
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ..+++|.|+.||||||+.+.|+.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.02  E-value=6.2e-05  Score=51.94  Aligned_cols=26  Identities=31%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..-.++++|++|+|||||++.|++..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44578899999999999999998864

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.01  E-value=6.5e-05  Score=51.29  Aligned_cols=28  Identities=25%  Similarity=0.332  Sum_probs=24.8

Q ss_pred             eeccceeeeeecccCCCceeEeeeeece
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+++|+++.|.|++|+|||||+..++..
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            5789999999999999999998877653

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.01  E-value=1.7e-05  Score=49.72  Aligned_cols=40  Identities=20%  Similarity=0.446  Sum_probs=29.4

Q ss_pred             CCccccceeeeeeccce---eeeeecccCCCceeEeeeeecee
Q psy7220          19 DTKPAVNQISFGVGRGE---CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~---~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +...+++.+.-.+..+.   .+.|.||.|+||||+++.++...
T Consensus        27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44445555555555565   68899999999999999887654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.01  E-value=4.6e-05  Score=46.65  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=19.0

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +++|.|+.||||||+.+.|+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.01  E-value=6.2e-05  Score=47.43  Aligned_cols=25  Identities=32%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             ccceeeeeecccCCCceeEeeeeec
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+..+++|.|+.||||||+.+.|+.
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3455789999999999999988863

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.01  E-value=5.9e-05  Score=47.62  Aligned_cols=26  Identities=38%  Similarity=0.336  Sum_probs=21.5

Q ss_pred             ccceeeeeecccCCCceeEeeeeece
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ..+-+++|.|+.||||||+.+.|+..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34557899999999999999988753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.01  E-value=5.3e-05  Score=48.23  Aligned_cols=21  Identities=38%  Similarity=0.476  Sum_probs=18.4

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|+|+.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998854

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.01  E-value=5.4e-05  Score=45.80  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=19.5

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            47899999999999999887653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.01  E-value=6.1e-05  Score=47.43  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=24.3

Q ss_pred             eeeeeecccCCCceeEeeeeeceeecCCCce
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA   65 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i   65 (80)
                      ..+.|.||+|+|||||+++++.........+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~   85 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS   85 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            5788999999999999999887665433333

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=97.00  E-value=0.00015  Score=45.07  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=4.5

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999988765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.00  E-value=4.7e-05  Score=51.72  Aligned_cols=26  Identities=38%  Similarity=0.406  Sum_probs=23.1

Q ss_pred             eeeeecccCCCceeEeeeeeceeecC
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPT   61 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~   61 (80)
                      .+.|.||+|+||||+++.+.+...+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            78999999999999999998877654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.00  E-value=4.9e-05  Score=45.60  Aligned_cols=22  Identities=14%  Similarity=0.238  Sum_probs=19.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999988753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.99  E-value=4.9e-05  Score=45.22  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.99  E-value=5.7e-05  Score=45.36  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=18.9

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|+.|+|||||++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999988876

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.98  E-value=5.9e-05  Score=46.37  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=19.9

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            57899999999999999887653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.98  E-value=5.9e-05  Score=46.64  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999988764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.98  E-value=5.9e-05  Score=46.05  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=18.9

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +++|.|+.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.96  E-value=6.3e-05  Score=49.39  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=20.2

Q ss_pred             ceeeeeecccCCCceeEeeeeec
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      --+++|.|+.||||||+.+.|+.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998865

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.96  E-value=6.2e-05  Score=45.37  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            3789999999999999988653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.96  E-value=5.1e-05  Score=46.65  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=20.6

Q ss_pred             eeeeecccCCCceeEeeeeeceee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .++|+|+.|+|||||++.+.+...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            478999999999999998887543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.94  E-value=5.8e-05  Score=45.03  Aligned_cols=21  Identities=24%  Similarity=0.287  Sum_probs=18.3

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|+.|+|||||++.+.+
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999987764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.94  E-value=4.3e-05  Score=51.47  Aligned_cols=40  Identities=25%  Similarity=0.286  Sum_probs=31.2

Q ss_pred             CCccccceeeeeeccc--eeeeeecccCCCceeEeeeeecee
Q psy7220          19 DTKPAVNQISFGVGRG--ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g--~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +...+++.+...+..+  ..+.|.||+|+||||+++.++..+
T Consensus        41 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4455666666666666  448899999999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.94  E-value=5.9e-05  Score=45.02  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.94  E-value=5.9e-05  Score=45.03  Aligned_cols=22  Identities=18%  Similarity=0.175  Sum_probs=19.0

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.94  E-value=6.6e-05  Score=46.07  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++++|.|+.||||||+.+.|+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.93  E-value=7.8e-05  Score=45.28  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             cceeeeeecccCCCceeEeeeeec
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +.-.++++|+.|+|||||++.+.+
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            445688999999999999998865

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.93  E-value=0.00011  Score=46.29  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|++|+|||||++.+.+..
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~~   47 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGLQ   47 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            57899999999999999987643

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.93  E-value=6.4e-05  Score=45.27  Aligned_cols=22  Identities=27%  Similarity=0.176  Sum_probs=18.9

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999887643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.92  E-value=7.1e-05  Score=45.90  Aligned_cols=23  Identities=30%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            36899999999999999887643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.92  E-value=6.3e-05  Score=45.19  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++++|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999998887643

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.92  E-value=6.4e-05  Score=45.64  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.0

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999887653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.91  E-value=6.4e-05  Score=45.16  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=19.0

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999888653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.91  E-value=6.5e-05  Score=45.56  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999888654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.90  E-value=6.7e-05  Score=44.95  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=18.7

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|+.|+|||||++.+.+
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999998865

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=96.89  E-value=0.00017  Score=45.11  Aligned_cols=23  Identities=22%  Similarity=0.263  Sum_probs=19.9

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        34 ~ki~vvG~~~~GKSsli~~l~~~   56 (199)
T 3l0i_B           34 FKLLLIGDSGVGKSCLLLRFADD   56 (199)
T ss_dssp             EEEEEECCTTSCCTTTTTSSBCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35789999999999999988764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.89  E-value=6.8e-05  Score=46.56  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=19.3

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+++|+|+.||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998865

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.89  E-value=9e-05  Score=49.03  Aligned_cols=25  Identities=36%  Similarity=0.266  Sum_probs=21.5

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567899999999999999988754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.89  E-value=9.1e-05  Score=49.23  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=18.8

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|++|+|||||++.|.+.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999887653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.88  E-value=7e-05  Score=44.89  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=18.7

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999877643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.88  E-value=7.4e-05  Score=50.41  Aligned_cols=28  Identities=21%  Similarity=0.182  Sum_probs=23.5

Q ss_pred             ceeeeeecccCCCceeEeeeeeceeecC
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAIKPT   61 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~~~~   61 (80)
                      +..+.|.||+|+|||||++.++......
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~   64 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR   64 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            4578899999999999999998766543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.87  E-value=0.00014  Score=45.97  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=19.3

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998853

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.87  E-value=7.4e-05  Score=45.35  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.0

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.87  E-value=7.5e-05  Score=45.85  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=19.6

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.|.+-
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.87  E-value=8.7e-05  Score=49.87  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             ceeeeeecccCCCceeEeeeee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .-+++|.|+.||||||+.+.|.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999886

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.86  E-value=9.5e-05  Score=50.20  Aligned_cols=25  Identities=24%  Similarity=0.407  Sum_probs=21.9

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +-.+++|+|+.|+|||||++.|.|.
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4457899999999999999999875

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.85  E-value=0.00016  Score=50.15  Aligned_cols=38  Identities=21%  Similarity=0.216  Sum_probs=30.8

Q ss_pred             CCCccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        18 ~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +.....++...+.+ .|.-+.|.|++|+||||+...|..
T Consensus       129 ~~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          129 LARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             TCEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             hccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            34456788888887 778899999999999999877664

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.85  E-value=9.3e-05  Score=49.11  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=21.9

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++..+.|.||+|+||||+++++++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            45678899999999999999987643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.84  E-value=8e-05  Score=45.54  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.84  E-value=9.4e-05  Score=49.15  Aligned_cols=23  Identities=43%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|..|+|||||++.|.|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47899999999999999998863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.84  E-value=0.00011  Score=48.26  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=21.5

Q ss_pred             ccceeeeeecccCCCceeEeeeeec
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++-+++|.|+.||||||+.+.|+.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3566899999999999999998864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.84  E-value=8e-05  Score=44.61  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=18.6

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|+.|+|||||++.+.+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999988875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.83  E-value=9.4e-05  Score=47.79  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.5

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +++|.|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.83  E-value=8.3e-05  Score=45.50  Aligned_cols=21  Identities=38%  Similarity=0.447  Sum_probs=18.9

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|+|+.|+|||||++.+.+
T Consensus        13 ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999988875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.82  E-value=9.4e-05  Score=47.47  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .-+++|+|..||||||+.+.|+..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999988754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.82  E-value=8.5e-05  Score=46.01  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.4

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5789999999999999988763

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.82  E-value=9.8e-05  Score=44.83  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999988753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.81  E-value=0.00012  Score=45.34  Aligned_cols=24  Identities=33%  Similarity=0.344  Sum_probs=20.7

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            457899999999999999887654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.80  E-value=8.8e-05  Score=52.12  Aligned_cols=23  Identities=43%  Similarity=0.677  Sum_probs=20.4

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|++|+|||||++.|++..
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998863

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.79  E-value=9.3e-05  Score=44.55  Aligned_cols=23  Identities=43%  Similarity=0.484  Sum_probs=19.5

Q ss_pred             ceeeeeecccCCCceeEeeeeec
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .-.++++|+.|+|||||++.+.+
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34588999999999999988854

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.77  E-value=0.00012  Score=46.95  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=20.4

Q ss_pred             cceeeeeecccCCCceeEeeeeec
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++-++.|.|+.||||||+.+.|+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345788999999999999998864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.77  E-value=9.8e-05  Score=44.97  Aligned_cols=22  Identities=18%  Similarity=0.175  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            5789999999999999888653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.77  E-value=0.00012  Score=49.84  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +++|+|++|+|||||++.|.|-
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999875

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.77  E-value=9.8e-05  Score=44.68  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.7

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|+|+.|+|||||++.+.+
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999998864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.76  E-value=0.00012  Score=47.89  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -.++|+|+.|+|||||++.|.+-
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            35889999999999999988764

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.76  E-value=9.5e-05  Score=53.78  Aligned_cols=43  Identities=28%  Similarity=0.357  Sum_probs=32.6

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY   66 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~   66 (80)
                      +++.+ +.+-+|+..+|+|++|+|||||++.|........+.+.
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~  183 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS  183 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence            45444 56678999999999999999999988776544344444

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.76  E-value=0.0001  Score=45.46  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=19.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5789999999999999988653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.76  E-value=0.0001  Score=44.60  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.3

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988754

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.76  E-value=0.00011  Score=52.47  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=27.7

Q ss_pred             eeeccc--eeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          29 FGVGRG--ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        29 l~i~~g--~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      |.+.++  .+++++|++|+||||++..|++.+......+.+
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll  132 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL  132 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            444434  589999999999999999998866433233433

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.75  E-value=0.0001  Score=44.17  Aligned_cols=21  Identities=38%  Similarity=0.431  Sum_probs=18.3

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|+.|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            368999999999999988864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.75  E-value=0.00026  Score=46.56  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=26.2

Q ss_pred             CCccccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          19 DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .....++..-+.+ .|..+.|+||+|+|||||...|+
T Consensus        20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La   55 (205)
T 2qmh_A           20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELV   55 (205)
T ss_dssp             -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHH
T ss_pred             CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHH
Confidence            3345566655554 56778899999999999987664

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.75  E-value=0.0001  Score=44.77  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5789999999999999888653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.73  E-value=0.00018  Score=47.40  Aligned_cols=27  Identities=26%  Similarity=0.229  Sum_probs=22.9

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++-+++|.|+.||||||+.+.|+..+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            577899999999999999999887654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.73  E-value=0.00012  Score=46.75  Aligned_cols=21  Identities=33%  Similarity=0.308  Sum_probs=18.5

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|.|+.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999998865

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.73  E-value=0.00011  Score=46.38  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=19.8

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999887643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.72  E-value=0.00014  Score=44.73  Aligned_cols=25  Identities=44%  Similarity=0.614  Sum_probs=21.0

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.-.++++|+.|+|||||++.+.+-
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4456889999999999999988754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.71  E-value=0.00015  Score=44.83  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            345789999999999999988763

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.70  E-value=0.00012  Score=45.63  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.3

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5789999999999999888654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.70  E-value=0.00012  Score=44.84  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999888653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.70  E-value=0.00012  Score=44.49  Aligned_cols=22  Identities=32%  Similarity=0.330  Sum_probs=19.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999888754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.70  E-value=0.00012  Score=45.47  Aligned_cols=22  Identities=18%  Similarity=0.175  Sum_probs=19.0

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999888643

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.69  E-value=0.00014  Score=48.43  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.2

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999998864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.69  E-value=0.00012  Score=45.22  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=19.0

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|+|+.|+|||||++.+.+
T Consensus        10 ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            578999999999999998875

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.68  E-value=0.00014  Score=48.51  Aligned_cols=23  Identities=48%  Similarity=0.728  Sum_probs=20.4

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|..|+|||||++.|.|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.68  E-value=0.00013  Score=45.08  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999988764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.68  E-value=0.00015  Score=48.19  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|+.|+|||||++.|+|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47899999999999999998743

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.68  E-value=0.00016  Score=45.01  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999887643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.68  E-value=0.00013  Score=45.08  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.67  E-value=0.00016  Score=43.92  Aligned_cols=26  Identities=31%  Similarity=0.312  Sum_probs=21.6

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ....+.|.||.|+|||++++.++...
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            44668899999999999998887654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=95.70  E-value=0.00028  Score=44.16  Aligned_cols=23  Identities=22%  Similarity=0.125  Sum_probs=19.2

Q ss_pred             ceeeeeecccCCCceeEeeeeec
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .=.++++|+.|+|||||++.+.+
T Consensus        30 ~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           30 AIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            34578999999999999987764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.67  E-value=0.00014  Score=47.98  Aligned_cols=28  Identities=25%  Similarity=0.249  Sum_probs=23.0

Q ss_pred             eccceeeeeecccCCCceeEeeeeecee
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +.++..+.|.||+|+|||++++.++...
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3456668899999999999999997653

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.67  E-value=0.00018  Score=48.75  Aligned_cols=27  Identities=22%  Similarity=0.303  Sum_probs=23.9

Q ss_pred             eeccceeeeeecccCCCceeEeeeeec
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -+++|+++.|.|++|+|||||...++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999876653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.66  E-value=0.00016  Score=48.39  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=20.8

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|+.++|||||++.|.|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            58899999999999999998864

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.66  E-value=0.00018  Score=50.82  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=22.0

Q ss_pred             eccceeeeeecccCCCceeEeeeeec
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -....++.|+|++||||||+.+.|+.
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.65  E-value=0.00014  Score=45.28  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=19.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999988653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.64  E-value=0.00014  Score=44.52  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=18.9

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999887643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.64  E-value=0.00014  Score=45.55  Aligned_cols=26  Identities=23%  Similarity=0.203  Sum_probs=21.2

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +.=.++|+|+.|+|||||++.+.+-.
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            34458899999999999999887643

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.64  E-value=0.00029  Score=45.08  Aligned_cols=25  Identities=36%  Similarity=0.410  Sum_probs=22.0

Q ss_pred             eeccceeeeeecccCCCceeEeeee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l   54 (80)
                      -+++|+++.|.|+.|+|||+|..-+
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~   50 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQF   50 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence            4789999999999999999997543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.64  E-value=0.00017  Score=46.19  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=20.4

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346889999999999999888764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.63  E-value=0.00014  Score=44.93  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=19.3

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999888654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.63  E-value=0.00014  Score=44.31  Aligned_cols=20  Identities=25%  Similarity=0.199  Sum_probs=17.6

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++++|+.|+|||||++.+.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~   26 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYT   26 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999997665

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.63  E-value=0.00015  Score=45.96  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=19.8

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -.++|+|+.|+|||||++.|.+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999887654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.62  E-value=0.00018  Score=47.42  Aligned_cols=28  Identities=32%  Similarity=0.647  Sum_probs=20.6

Q ss_pred             eccceeeeeecccCCCceeEeeeeecee
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..+|-+++|.|+.||||||+.+.|...+
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999998886544

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.62  E-value=0.00017  Score=50.40  Aligned_cols=23  Identities=17%  Similarity=0.121  Sum_probs=19.7

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+++|+||+|||||||.+.|+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            37899999999999999877654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.61  E-value=0.00017  Score=44.99  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999888654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.61  E-value=8e-05  Score=48.76  Aligned_cols=28  Identities=32%  Similarity=0.449  Sum_probs=21.8

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +..+.|  +.|.||+|+|||+++++++...
T Consensus        41 ~~~~~~--vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           41 AKIPKG--VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             CCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence            334444  7789999999999999988643

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.61  E-value=0.00015  Score=44.30  Aligned_cols=20  Identities=20%  Similarity=0.353  Sum_probs=18.0

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++|+|+.|+|||||++.+.
T Consensus         8 ki~~~G~~~~GKSsli~~l~   27 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFV   27 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            57899999999999998876

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.61  E-value=7e-05  Score=47.39  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.8

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      -.++|+|+.|+|||||++.|.+-.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            357899999999999999998753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.61  E-value=0.00015  Score=45.67  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=23.4

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .-.++.|.-...-.++++|+.|+|||||++.+.+-
T Consensus        14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             -----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence            33444444444456899999999999999888763

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.60  E-value=0.00021  Score=50.04  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++..+.|+||+|||||||...|+.-+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            45689999999999999988777543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.00015  Score=44.94  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.3

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4789999999999999988753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.00017  Score=44.49  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             ceeeeeecccCCCceeEeeeeec
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .-.++++|+.|+|||||++.+.+
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34578999999999999988873

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.60  E-value=0.00016  Score=44.47  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.2

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -.++++|+.|+|||||++.+.+
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3578999999999999998875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.60  E-value=0.00018  Score=44.97  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++++|+.|+|||||++.+.+-.
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999998877743

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.59  E-value=0.0002  Score=46.43  Aligned_cols=25  Identities=40%  Similarity=0.402  Sum_probs=21.1

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4457899999999999999988743

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.58  E-value=0.00016  Score=44.67  Aligned_cols=21  Identities=19%  Similarity=0.142  Sum_probs=18.6

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|+|+.|+|||||++.+.+
T Consensus        22 ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999988864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.57  E-value=0.00018  Score=45.11  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=19.2

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35789999999999999988653

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.57  E-value=0.00012  Score=49.86  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=30.2

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -+.|+.+.--+++|+++.|.|++|+|||||+..++.
T Consensus        55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~   90 (315)
T 3bh0_A           55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK   90 (315)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            356777776799999999999999999999876653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.56  E-value=0.00017  Score=44.74  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999888653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.56  E-value=0.00017  Score=45.16  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999888653

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.56  E-value=0.00022  Score=46.44  Aligned_cols=28  Identities=32%  Similarity=0.404  Sum_probs=23.1

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      -+|.+++|.|+.||||||+.+.|...+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999998865443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.55  E-value=0.00024  Score=50.52  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.8

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|++|+|||||++.|.|-.
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~~   47 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGER   47 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68999999999999999998854

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.55  E-value=0.00021  Score=49.91  Aligned_cols=27  Identities=26%  Similarity=0.316  Sum_probs=23.9

Q ss_pred             eccceeeeeecccCCCceeEeeeeece
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +++|+++.|.|++|+|||||...++..
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999998766643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.55  E-value=0.00017  Score=44.29  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999988654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.55  E-value=0.00022  Score=46.29  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=21.2

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +.+++|.|+.||||||+.+.|+..+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            5678999999999999999887543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.55  E-value=0.00018  Score=45.14  Aligned_cols=21  Identities=33%  Similarity=0.561  Sum_probs=18.8

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|+|++|+|||||++.+.+
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999988875

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.54  E-value=0.00021  Score=47.24  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.8

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|..++|||||++.|.|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            58899999999999999998864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.54  E-value=0.00018  Score=45.62  Aligned_cols=22  Identities=32%  Similarity=0.348  Sum_probs=19.0

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      =.++|+|+.|+|||||++.+.+
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            3588999999999999987764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.53  E-value=0.00021  Score=45.08  Aligned_cols=22  Identities=36%  Similarity=0.318  Sum_probs=19.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5789999999999999888753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.53  E-value=0.00018  Score=44.58  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.4

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5789999999999999988764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.51  E-value=0.00019  Score=44.86  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=20.1

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .=.++|+|+.|+|||||++.+.+-
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345889999999999999888753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.51  E-value=0.00019  Score=44.64  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=19.6

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999888653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.51  E-value=0.00021  Score=43.49  Aligned_cols=22  Identities=23%  Similarity=0.099  Sum_probs=18.9

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -.++++|+.|+|||||++.+.+
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3578999999999999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.50  E-value=0.0002  Score=44.78  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=20.4

Q ss_pred             ccceeeeeecccCCCceeEeeeeece
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++.-.++|+|+.|+|||||++.+.+-
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            34456889999999999999988653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.50  E-value=0.00025  Score=43.73  Aligned_cols=23  Identities=35%  Similarity=0.332  Sum_probs=19.5

Q ss_pred             ceeeeeecccCCCceeEeeeeec
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .-.++++|+.|+|||||++.+.+
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            34588999999999999988853

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.49  E-value=0.00022  Score=47.72  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=21.8

Q ss_pred             eeeeeecccCCCceeEeeeeeceee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      ..++++|.+|+|||||++.|.+-..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            4788999999999999999987654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.49  E-value=0.0002  Score=44.37  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             ceeeeeecccCCCceeEeeeeec
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .=.++|+|+.|+|||||++.+.+
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHc
Confidence            34578999999999999988875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.49  E-value=0.00023  Score=45.21  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|+.|+|||||++.+.+
T Consensus        36 ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            578999999999999998875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.49  E-value=0.00023  Score=44.30  Aligned_cols=25  Identities=32%  Similarity=0.302  Sum_probs=19.6

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.-.++++|+.|+|||||++.+.+-
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3345889999999999999887653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.48  E-value=0.00026  Score=44.23  Aligned_cols=24  Identities=33%  Similarity=0.373  Sum_probs=20.0

Q ss_pred             cceeeeeecccCCCceeEeeeeec
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +.-.++|+|+.|+|||||++.+.+
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            344688999999999999998854

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.48  E-value=0.00016  Score=50.42  Aligned_cols=49  Identities=12%  Similarity=0.094  Sum_probs=36.1

Q ss_pred             ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220          21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        21 ~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      -+.|+.+.--+.+|+.+.|.|++|+|||||+..++.......+.+.+..
T Consensus        33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS   81 (338)
T 4a1f_A           33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS   81 (338)
T ss_dssp             CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            3566666668999999999999999999998777654433334454443

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.47  E-value=0.00021  Score=45.38  Aligned_cols=23  Identities=17%  Similarity=0.226  Sum_probs=19.9

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999888764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.47  E-value=0.00024  Score=46.89  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      -.++++|+.|+|||||++.|.+-.
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999998744

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.46  E-value=0.00026  Score=46.91  Aligned_cols=27  Identities=26%  Similarity=0.541  Sum_probs=23.1

Q ss_pred             cceeeeeecccCCCceeEeeeeeceee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +|.+++|.|++||||||+.+.|...+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999988765443

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.45  E-value=0.00029  Score=46.22  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=23.4

Q ss_pred             eeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          28 SFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        28 sl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +-..++..++.|+||.||||+|..+.|+-
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34456777889999999999999988863

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.45  E-value=0.00022  Score=44.86  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=19.0

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999888653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.44  E-value=0.00023  Score=45.25  Aligned_cols=24  Identities=29%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +-+++|+|+.||||||+.+.|+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            347899999999999999988653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.44  E-value=0.00021  Score=43.44  Aligned_cols=26  Identities=35%  Similarity=0.254  Sum_probs=21.5

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ....+.|.||.|+||||+++.++...
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            35567899999999999999887654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.42  E-value=0.00029  Score=45.59  Aligned_cols=27  Identities=30%  Similarity=0.208  Sum_probs=21.4

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +...-+.|.||.|+|||++.+.++...
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            334457799999999999999887643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.41  E-value=0.00027  Score=46.74  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.1

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++++|+.|+|||||++.|.+-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999987643

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.41  E-value=0.00032  Score=48.84  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             ceeeeeecccCCCceeEeeeeec
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +.+++|+||+|||||||...|+.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            34788999999999999887764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.40  E-value=0.00029  Score=48.95  Aligned_cols=23  Identities=35%  Similarity=0.349  Sum_probs=19.6

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ..+.|+||+||||||+.+.|+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999998887754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.40  E-value=0.0003  Score=45.88  Aligned_cols=27  Identities=33%  Similarity=0.546  Sum_probs=23.0

Q ss_pred             cceeeeeecccCCCceeEeeeeeceee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +|.+++|-|++||||||..+.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            478899999999999999988876554

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.40  E-value=0.00025  Score=44.07  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=18.3

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|+|+.|+|||||++.+.+
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            578999999999999977754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.40  E-value=0.00025  Score=44.48  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999888753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.40  E-value=0.00023  Score=43.34  Aligned_cols=21  Identities=24%  Similarity=0.408  Sum_probs=18.7

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|+.|+|||||++.+.+
T Consensus         9 ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999988765

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.36  E-value=0.00074  Score=42.49  Aligned_cols=22  Identities=23%  Similarity=0.148  Sum_probs=17.8

Q ss_pred             ceeeeeecccCCCceeEeeeee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .=.++++|+.|+|||||++.+.
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~   51 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYT   51 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHH
Confidence            3457899999999999995543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.35  E-value=0.00027  Score=43.74  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999888643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.33  E-value=0.00029  Score=44.77  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=19.4

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -.++|+|..|+|||||++.+..-
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999877654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.30  E-value=0.00037  Score=45.61  Aligned_cols=28  Identities=36%  Similarity=0.582  Sum_probs=23.8

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .+|.++.+-|+.||||||..+.|...+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3688999999999999999988876554

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.28  E-value=0.00041  Score=45.69  Aligned_cols=27  Identities=26%  Similarity=0.411  Sum_probs=23.3

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+|.+++|.|+.||||||+.+.|...+
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l   45 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYL   45 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999998887544

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.28  E-value=0.00033  Score=49.82  Aligned_cols=26  Identities=19%  Similarity=0.167  Sum_probs=22.3

Q ss_pred             ceeeeeecccCCCceeEeeeeeceee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      ...+.|.||+|+|||||++++++...
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            35688999999999999999988653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.24  E-value=0.00063  Score=49.06  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=26.4

Q ss_pred             cceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      ++.++.++|++|+||||++..|+..+....-++.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            46789999999999999998888666543334433

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.23  E-value=0.00065  Score=41.03  Aligned_cols=27  Identities=22%  Similarity=0.186  Sum_probs=22.3

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..+.-+.|.||.|+|||++.+.+....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            455668899999999999999887653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.22  E-value=0.00054  Score=43.39  Aligned_cols=19  Identities=42%  Similarity=0.426  Sum_probs=17.0

Q ss_pred             eeeeecccCCCceeEeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l   54 (80)
                      .++++|+.|+|||||++.+
T Consensus        17 ki~v~G~~~~GKSsli~~~   35 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRH   35 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTB
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999974

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.20  E-value=0.00017  Score=51.63  Aligned_cols=42  Identities=19%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             CCCcccc---ceeeeeecccee--eeeecccCCCceeEeeeeeceee
Q psy7220          18 YDTKPAV---NQISFGVGRGEC--FGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        18 ~~~~~vl---~~isl~i~~g~~--~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .+...++   ..+...+..+..  +.|.||+|+||||+.++|+....
T Consensus        29 vGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           29 IGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             CSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3444455   556666667775  77899999999999999987653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.19  E-value=0.00043  Score=44.65  Aligned_cols=21  Identities=33%  Similarity=0.561  Sum_probs=18.9

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|+|++|+|||||++.+.+
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999988875

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.19  E-value=0.00042  Score=46.78  Aligned_cols=27  Identities=26%  Similarity=0.397  Sum_probs=23.0

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..+..+.|.||.|+||||+++.+....
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456678899999999999999887655

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.19  E-value=0.00037  Score=43.77  Aligned_cols=22  Identities=23%  Similarity=0.203  Sum_probs=19.1

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      =.++|+|+.|+|||||++.+.+
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            3588999999999999988864

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.00039  Score=44.26  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.3

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.|+|||||++.+.+-
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5789999999999999888754

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.17  E-value=0.00035  Score=53.03  Aligned_cols=29  Identities=21%  Similarity=0.170  Sum_probs=23.4

Q ss_pred             eeccceeeeeecccCCCceeEeeeeecee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+..++.+.++|||||||||++.++....
T Consensus       105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~  133 (773)
T 2xau_A          105 LYQNNQIMVFVGETGSGKTTQIPQFVLFD  133 (773)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHhCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            35678899999999999999877775443

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.14  E-value=0.00014  Score=47.97  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.0

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +..+.|.||.|+|||++.+.++...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4457799999999999999887654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.12  E-value=0.00053  Score=44.29  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=21.4

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      |.+++|=|+.||||||.++.|...+
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L   26 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRL   26 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHH
Confidence            4688999999999999998887655

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.12  E-value=0.00055  Score=48.54  Aligned_cols=38  Identities=16%  Similarity=0.102  Sum_probs=30.2

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +.|+.+.--+++|+++.|.|++|+|||||+..++....
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a  225 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA  225 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            34555555689999999999999999999877765443

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.11  E-value=0.0006  Score=47.36  Aligned_cols=24  Identities=25%  Similarity=0.227  Sum_probs=20.0

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ...+.|+||+|||||||...|+..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            346889999999999999887643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.09  E-value=0.00045  Score=43.36  Aligned_cols=22  Identities=23%  Similarity=0.117  Sum_probs=18.9

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -.++|+|+.|+|||||++.+.+
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3578999999999999988764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.09  E-value=0.00046  Score=43.91  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=19.4

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            35789999999999999887653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.04  E-value=0.00066  Score=47.98  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.6

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|++++|||||++.|.|-.
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~~   27 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGER   27 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998854

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.01  E-value=0.0007  Score=46.57  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.8

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|..++|||||++.|.|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999854

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.01  E-value=0.00098  Score=42.21  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=18.3

Q ss_pred             cceeeeeecccCCCceeEe-eee
Q psy7220          33 RGECFGLLGLNGAGKTTTF-KML   54 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll-~~l   54 (80)
                      +|.+..+.|+.|+||||++ +.+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHH
Confidence            4778899999999999997 443

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.97  E-value=0.00073  Score=48.38  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=18.9

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+++|.||+|||||||...|+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            4688999999999999887764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.96  E-value=0.00094  Score=45.32  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             cceeeeeecccCCCceeEeeeeeceee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      ++..+.|.||.|+|||++.+.++....
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            455788999999999999999987664

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.95  E-value=0.00063  Score=44.05  Aligned_cols=21  Identities=43%  Similarity=0.476  Sum_probs=18.1

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++.|+||.||||+|..+.|+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999988874

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.93  E-value=0.00072  Score=44.84  Aligned_cols=26  Identities=27%  Similarity=0.349  Sum_probs=21.2

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+..+.|.||.|+|||++.+.++..+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34457899999999999998777655

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.92  E-value=0.00071  Score=47.42  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=23.3

Q ss_pred             eeccceeeeeecccCCCceeEeeeeec
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -+++|+++.|.|+.|+|||||...++-
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            478999999999999999999866543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=95.92  E-value=0.0013  Score=45.58  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=24.8

Q ss_pred             eeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+.++++.--.++|+|..++|||||++.|++-.
T Consensus       150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~  182 (342)
T 1lnz_A          150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSAK  182 (342)
T ss_dssp             EEEEEEECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred             hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence            344444444458899999999999999998753

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.92  E-value=0.00012  Score=49.40  Aligned_cols=42  Identities=24%  Similarity=0.340  Sum_probs=32.6

Q ss_pred             CCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          17 PYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        17 ~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..+...+++.+...+..+.-+.|.||.|+|||++++.++...
T Consensus        29 i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           29 VVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             CCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred             eeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            345556666666666678889999999999999999887643

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.89  E-value=0.00062  Score=42.13  Aligned_cols=22  Identities=32%  Similarity=0.311  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+.|.||.|+|||++++.++..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999888754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.89  E-value=0.00096  Score=40.24  Aligned_cols=26  Identities=19%  Similarity=0.084  Sum_probs=21.3

Q ss_pred             ccceeeeeecccCCCceeEeeeeece
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.+.-+.|.|+.|+|||++.+.+...
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHh
Confidence            34556889999999999999988753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.88  E-value=0.0011  Score=45.75  Aligned_cols=27  Identities=30%  Similarity=0.560  Sum_probs=22.2

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+.-+++|+|+.|+|||||+..|+..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            345578999999999999999887554

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.87  E-value=0.00076  Score=47.62  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=19.3

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|..++|||||++.|.+-.
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            37899999999999999998753

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.79  E-value=0.00097  Score=45.11  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=20.0

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +-.++|+|+.|+|||||++.+.+-
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            446889999999999999986553

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.76  E-value=0.00096  Score=43.85  Aligned_cols=26  Identities=19%  Similarity=0.027  Sum_probs=21.3

Q ss_pred             ccceeeeeecccCCCceeEeeeeece
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+...+.|.||.|+|||++.+.++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34456778999999999999988764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.74  E-value=0.0011  Score=44.70  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=21.1

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      -.++++|.+|+|||||++.|.|-.
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEecCCCchHHHHHHHhcCc
Confidence            468999999999999999998754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.73  E-value=0.00034  Score=46.62  Aligned_cols=39  Identities=15%  Similarity=0.281  Sum_probs=27.0

Q ss_pred             CCCccccceeeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        18 ~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++....++.+.-.+..|..+.|.|+.|+|||||++.+..
T Consensus        15 ~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~   53 (350)
T 2qen_A           15 FDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLN   53 (350)
T ss_dssp             CSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHH
Confidence            344344444433344567899999999999999987754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=95.71  E-value=0.00075  Score=48.58  Aligned_cols=26  Identities=15%  Similarity=0.303  Sum_probs=22.2

Q ss_pred             ccceeeeeecccCCCceeEeeeeece
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++|-.++|+|+.|+|||||++.|.+-
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            34556999999999999999998874

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.68  E-value=0.00098  Score=45.71  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=21.6

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +...+.|.||+|+|||++.++|+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            44567899999999999999998653

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.67  E-value=0.00047  Score=50.21  Aligned_cols=43  Identities=26%  Similarity=0.215  Sum_probs=35.9

Q ss_pred             CCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          16 FPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        16 ~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..++...+++.+...+..+.-+.|.||.|+|||++.+.|+...
T Consensus        23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred             hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence            3456667777777778888899999999999999999998755

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.60  E-value=0.00034  Score=47.33  Aligned_cols=41  Identities=20%  Similarity=0.429  Sum_probs=28.7

Q ss_pred             CCccccceeeeeecccee---eeeecccCCCceeEeeeeeceee
Q psy7220          19 DTKPAVNQISFGVGRGEC---FGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        19 ~~~~vl~~isl~i~~g~~---~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +...+++.+.-.+..+..   +.|.||.|+||||+++.++....
T Consensus        20 g~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             SCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            344455555555555553   77999999999999998876543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.59  E-value=0.0012  Score=44.79  Aligned_cols=25  Identities=36%  Similarity=0.364  Sum_probs=21.4

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +..+.|.||.|+||||+++.++...
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999887654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=95.57  E-value=0.0012  Score=48.34  Aligned_cols=26  Identities=19%  Similarity=0.134  Sum_probs=22.0

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .--.++|+|..|+|||||++.|.|..
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            33478999999999999999998753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.57  E-value=0.0012  Score=44.29  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=19.9

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      -.+.|.||.|+|||++.+.++...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            346678999999999999988654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.56  E-value=0.0012  Score=44.98  Aligned_cols=26  Identities=23%  Similarity=0.201  Sum_probs=21.4

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +..-+.|.||.|+|||++.+.++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHc
Confidence            44557789999999999999988643

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.55  E-value=0.0013  Score=45.86  Aligned_cols=28  Identities=18%  Similarity=0.017  Sum_probs=23.9

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeec
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -.+++|..+.|.||.|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3577888889999999999999887764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.53  E-value=0.0013  Score=44.75  Aligned_cols=26  Identities=19%  Similarity=0.262  Sum_probs=22.1

Q ss_pred             ceeeeeecccCCCceeEeeeeeceee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +..+.|.||.|+|||+|+++++....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            56788999999999999998876544

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=95.51  E-value=0.0014  Score=47.41  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=20.4

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++=.++|+|+.++|||||++.|.+-
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4455899999999999999999875

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=95.47  E-value=0.0013  Score=45.96  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=20.0

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|+.++|||||++.|.+.
T Consensus        10 ~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A           10 NIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5789999999999999999874

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=95.41  E-value=0.0012  Score=45.95  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=22.1

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++..++++|.+|+|||||++.|.+.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4567899999999999999999875

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.40  E-value=0.0017  Score=48.71  Aligned_cols=26  Identities=46%  Similarity=0.523  Sum_probs=22.3

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++.++.|.|.+||||||+.+.|...+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56689999999999999999987644

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=95.39  E-value=0.0017  Score=44.37  Aligned_cols=21  Identities=38%  Similarity=0.431  Sum_probs=18.9

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|+|+.|+|||||++.+.+
T Consensus       167 kI~ivG~~~vGKSsLl~~l~~  187 (329)
T 3o47_A          167 RILMVGLDAAGKTTILYKLKL  187 (329)
T ss_dssp             EEEEEESTTSSHHHHHHHTCS
T ss_pred             eEEEECCCCccHHHHHHHHhC
Confidence            588999999999999988765

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.39  E-value=0.0014  Score=43.45  Aligned_cols=22  Identities=36%  Similarity=0.428  Sum_probs=18.9

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -.+||+|+.||||||+.+.|+-
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            3579999999999999988754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.38  E-value=0.0016  Score=44.89  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=21.0

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +...+.|.||.|+|||+++++++..
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4456789999999999999988764

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.36  E-value=0.0016  Score=43.33  Aligned_cols=24  Identities=33%  Similarity=0.358  Sum_probs=20.1

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ...+.|.||.|+|||++++.+...
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~   61 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHE   61 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999988653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=95.36  E-value=0.003  Score=45.02  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=19.3

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|+.++|||||++.+.+-.
T Consensus        36 kI~IvG~~~vGKSTLin~L~~~~   58 (423)
T 3qq5_A           36 YIVVAGRRNVGKSSFMNALVGQN   58 (423)
T ss_dssp             EEEEECSCSTTTTTTTTSSCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58899999999999999988743

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.35  E-value=0.0018  Score=47.77  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=22.2

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+-++.|.|.+||||||+.+.|...+
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHh
Confidence            45678999999999999999887654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.34  E-value=0.0017  Score=43.90  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=20.4

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ..-+.|.||.|+|||++.++++..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            345779999999999999998764

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.34  E-value=0.0015  Score=44.87  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ...+.|.||.|+|||++.+.++...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh
Confidence            3457799999999999999887644

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=95.33  E-value=0.0014  Score=45.77  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=22.1

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++..++++|.+|+|||||++.|.+.
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            4567899999999999999999875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.31  E-value=0.0014  Score=44.07  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=19.8

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ..+.|.||.|+|||++++.++..
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35789999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	80
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-18
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-16
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	1e-15
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	7e-15
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	1e-14
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	2e-14
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	2e-14
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-13
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	1e-13
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-13
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	3e-13
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	9e-13
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-12
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	3e-12
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	3e-12
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-11
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	3e-11
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	9e-11
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-10
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	1e-10
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	6e-07
d1ni3a1	296	c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter	2e-04

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 73.5 bits (180), Expect = 2e-18
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
             K  +  ISF +  GE FGL+G NGAGKTTT ++++  IKP+SG   V   ++ +   
Sbjct: 12 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH 71

Query: 78 LVR 80
           VR
Sbjct: 72 EVR 74

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 68.8 bits (168), Expect = 2e-16
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 76
          +    A++ +S  V +G+   ++G NG+GK+T   ++TG +K   G  Y  N  I +  
Sbjct: 14 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE 72

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 65.7 bits (160), Expect = 1e-15
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 11 SHLE----TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 66
          S LE    +  YD KP + +I+  + +G      G NG GKTT  K ++  +KP  G   
Sbjct: 1  SKLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59

Query: 67 VMNHSIRD 74
               I  
Sbjct: 60 YNGVPITK 67

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 64.5 bits (157), Expect = 7e-15
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
          Y     +  +S     G+   ++G +G+GK+T  + +    KP+ G   V   +I    D
Sbjct: 12 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD 71

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 63.4 bits (154), Expect = 1e-14
 Identities = 20/63 (31%), Positives = 27/63 (42%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
          Y    A+  I   V RG+   L+G NGAGKTTT   + G ++   G        I +   
Sbjct: 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA 75

Query: 78 LVR 80
           V 
Sbjct: 76 HVI 78

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 63.6 bits (154), Expect = 2e-14
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
           F      A++ ++  +  GE FG+LG +GAGKTT  +++ G   P++G  Y  +  +
Sbjct: 12 VFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 62.9 bits (153), Expect = 2e-14
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 70
          +    AVN+++  +  GE   LLG +G GKTTT +M+ G  +PT G  Y  + 
Sbjct: 16 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDR 68

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 60.7 bits (147), Expect = 1e-13
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 21 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
             +  +S  V  GE   L+G NGAGK+T    + G +    G+       +  
Sbjct: 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEA 64

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 60.7 bits (147), Expect = 1e-13
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 15 TFPY-DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 73
           F Y D++  +  ISF           G +G GK+T F +L    +PT+G   +    I 
Sbjct: 8  DFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID 67

Query: 74 D 74
          +
Sbjct: 68 N 68

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 60.3 bits (146), Expect = 2e-13
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          +        I+  +  GE    +G +G GK+T  +M+ G    TSG+ ++    + D
Sbjct: 10 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND 66

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 59.9 bits (145), Expect = 3e-13
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          +    AV ++S  V  GE   LLG +G GKTTT +M+ G  +P+ G  Y+ +  +
Sbjct: 13 FGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV 67

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (142), Expect = 9e-13
 Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 13/78 (16%)

Query: 14  ETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG---------- 63
                   P +  I+  + +GE   + G  G+GKT+   ++ G ++ + G          
Sbjct: 42  SHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 101

Query: 64  ---NAYVMNHSIRDSMDL 78
               +++M  +I++++  
Sbjct: 102 CSQFSWIMPGTIKENIIF 119

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 58.1 bits (140), Expect = 1e-12
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 80
          +++ +S  V  GE F +LG  GAGKT   +++ G   P SG   +    + D      
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 57.5 bits (139), Expect = 3e-12
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
           +  +  P +  I+  + +GE    +G++G GK+T   ++      TSG   +  H+I+D
Sbjct: 25 QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD 84

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 57.2 bits (138), Expect = 3e-12
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
           A+N +S  V  G+ +G++G +GAGK+T  + +    +PT G+  V    +  
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 54.8 bits (132), Expect = 2e-11
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
           A+  ++  +  GE   ++G +G+GK+T   ++    KPT G  Y+ N    D
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 54.5 bits (131), Expect = 3e-11
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
          T+P    PA+  I+  +  G+   L+G +G+GK+T   ++T       G+  +  H +R+
Sbjct: 22 TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 81

Query: 75 SM 76
            
Sbjct: 82 YT 83

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 53.0 bits (127), Expect = 9e-11
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 74
           +  D+   ++ I+  + +GE  G++G +G+GK+T  K++     P +G   +  H +  
Sbjct: 10 RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL 69

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 1e-10
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 15 TFPYDTKP---AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS 71
          +F Y  +P    +  ++F +  GE   L+G NG+GK+T   +L    +PT G   +    
Sbjct: 18 SFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKP 77

Query: 72 IRD 74
          +  
Sbjct: 78 LPQ 80

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 52.7 bits (126), Expect = 1e-10
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 72
          + F +G  +   LLG  GAGK+   +++ G +KP  G   +    I
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 42.3 bits (98), Expect = 6e-07
 Identities = 7/40 (17%), Positives = 14/40 (35%)

Query: 38 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 77
           + G  G GKTT  K +   +   +   +       ++  
Sbjct: 4  IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK 43

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.6 bits (81), Expect = 2e-04
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 38 GLLGLNGAGKTTTFKMLTGAIKPTSGN 64
          G++G+   GK+T F+ +T ++     N
Sbjct: 14 GIVGMPNVGKSTFFRAITKSVLGNPAN 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.89
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.89
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.88
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.87
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.87
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.87
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.87
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.87
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.87
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.86
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.86
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.86
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.85
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.85
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.85
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.84
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.83
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.75
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.75
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.71
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.01
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.46
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.36
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.32
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.11
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.04
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.02
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.01
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.96
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.95
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.88
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.88
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.87
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.87
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.78
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.78
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.75
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.74
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.72
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.7
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.66
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.66
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.63
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.62
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.6
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.59
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.58
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.57
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.52
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.52
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.48
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.45
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.45
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.45
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.41
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.4
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.4
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.39
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.38
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.35
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.33
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.33
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.3
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.3
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.29
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.29
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.28
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.28
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.28
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.27
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.27
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.26
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.26
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.25
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.25
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.25
d1okkd2	207	GTPase domain of the signal recognition particle r	97.25
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.23
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.23
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.22
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.21
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.2
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.19
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.18
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.18
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.15
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.14
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.12
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.11
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.1
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.1
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.09
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.09
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.08
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.08
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.04
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.03
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.03
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.02
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.0
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.99
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.98
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.94
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.93
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.92
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.92
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.92
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.91
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.91
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.9
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.89
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.87
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.86
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.85
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.83
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.82
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.8
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.79
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.78
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.76
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.76
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.76
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.74
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.74
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.73
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.7
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.68
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.66
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.65
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.64
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.64
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.63
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.63
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.62
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.62
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.62
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.59
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.57
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.54
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.47
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.44
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.44
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.42
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.42
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.41
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.39
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.38
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.37
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.36
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.34
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.31
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.3
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.29
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.29
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.23
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.22
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.21
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.21
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.18
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.17
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.17
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.16
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.16
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.11
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.1
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.03
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.03
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.03
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.03
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.01
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.99
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.97
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.96
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.96
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.94
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.93
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.89
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.88
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.87
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.86
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.85
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.81
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.77
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.76
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.74
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.74
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.72
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.71
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.7
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.69
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.65
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.57
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.57
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.54
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.53
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.49
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.48
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.4
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.36
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.31
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.3
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.21
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.19
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.1
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.01
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.0
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.91
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.6
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.58
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.58
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.55
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.48
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.37
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.31
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.21
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.17
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.99
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.98
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	93.94
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.92
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.81
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	93.75
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.73
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.49
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.38
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.37
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	93.17
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.97
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.67
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.28
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.16
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.15
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.82
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.79
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	91.79
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.61
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	91.27
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.71
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	89.99
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.75
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	89.68
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	89.53
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	89.01
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	88.64
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	88.58
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	88.55
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	88.26
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.08
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.77
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	87.73
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	87.7
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	87.34
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.91
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	85.89
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	85.06
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	83.93
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	83.27
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.63
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	80.48

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=1.1e-25  Score=149.97  Aligned_cols=68  Identities=32%  Similarity=0.487  Sum_probs=64.3

Q ss_pred             hhhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           7 QTVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+++++++++.|++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus         5 ~~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~   72 (239)
T d1v43a3           5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY   72 (239)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred             CeEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceeccc
Confidence            34788899999999999999999999999999999999999999999999999999999999998764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.7e-25  Score=147.54  Aligned_cols=66  Identities=24%  Similarity=0.414  Sum_probs=62.6

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|++..+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~   66 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND   66 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTT
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCC
Confidence            467888999999999999999999999999999999999999999999999999999999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.88  E-value=3.7e-25  Score=147.22  Aligned_cols=67  Identities=28%  Similarity=0.478  Sum_probs=63.2

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++++++++.|++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus         6 ~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~   72 (240)
T d1ji0a_           6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN   72 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred             EEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccccc
Confidence            4677888999999999999999999999999999999999999999999999999999999998764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.87  E-value=1.4e-24  Score=140.88  Aligned_cols=66  Identities=27%  Similarity=0.478  Sum_probs=60.8

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++++++++.|+ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus         2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~   67 (200)
T d1sgwa_           2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK   67 (200)
T ss_dssp             EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred             eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH
Confidence            367788899885 579999999999999999999999999999999999999999999999988764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=6.6e-25  Score=145.87  Aligned_cols=66  Identities=38%  Similarity=0.563  Sum_probs=62.6

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|+++++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus         3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~   68 (238)
T d1vpla_           3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE   68 (238)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred             EEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc
Confidence            567889999999999999999999999999999999999999999999999999999999988754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.87  E-value=1.4e-24  Score=144.70  Aligned_cols=66  Identities=33%  Similarity=0.480  Sum_probs=62.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|++.++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus         4 i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~   69 (240)
T d1g2912           4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD   69 (240)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred             EEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecc
Confidence            567888999999999999999999999999999999999999999999999999999999988754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.87  E-value=1.2e-24  Score=145.65  Aligned_cols=67  Identities=25%  Similarity=0.451  Sum_probs=62.5

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++++++++.|++.++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus         4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~   70 (254)
T d1g6ha_           4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN   70 (254)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred             eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccc
Confidence            3567788899999999999999999999999999999999999999999999999999999998753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.87  E-value=4.2e-24  Score=142.21  Aligned_cols=66  Identities=26%  Similarity=0.488  Sum_probs=60.8

Q ss_pred             hccccccCCCCC-ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~-~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++++++|.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+
T Consensus         2 le~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~   68 (242)
T d1mv5a_           2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN   68 (242)
T ss_dssp             EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTT
T ss_pred             EEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEecc
Confidence            567888999954 679999999999999999999999999999999999999999999999988754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.87  E-value=2.5e-24  Score=144.51  Aligned_cols=67  Identities=19%  Similarity=0.307  Sum_probs=63.0

Q ss_pred             hhccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++++++++.|++.++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~   68 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINL   68 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCE
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEecc
Confidence            3678888999999999999999999999999999999999999999999999999999999998753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.86  E-value=3.8e-24  Score=141.77  Aligned_cols=65  Identities=26%  Similarity=0.457  Sum_probs=60.3

Q ss_pred             hccccccCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +++++++++|++ .+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.+
T Consensus         2 i~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~   66 (229)
T d3d31a2           2 IEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD   66 (229)
T ss_dssp             EEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred             EEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccc
Confidence            567788999986 58999999999999999999999999999999999999999999999998754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=7.6e-24  Score=140.97  Aligned_cols=67  Identities=22%  Similarity=0.462  Sum_probs=61.4

Q ss_pred             hhccccccCCCC--CccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYD--TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~--~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      +|++++++|.|.  .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus         1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~   69 (241)
T d2pmka1           1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL   69 (241)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred             CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecc
Confidence            467888999984  4679999999999999999999999999999999999999999999999988753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-23  Score=140.33  Aligned_cols=67  Identities=25%  Similarity=0.457  Sum_probs=62.0

Q ss_pred             hhccccccCCCCCc---cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~~---~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+++++++|.|+++   .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~   80 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQ   80 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecch
Confidence            58889999999653   59999999999999999999999999999999999999999999999998754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.85  E-value=4.1e-24  Score=142.59  Aligned_cols=66  Identities=26%  Similarity=0.496  Sum_probs=60.5

Q ss_pred             hccccccCCC--CCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPY--DTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~--~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|  ++..+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++..
T Consensus         4 i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~   71 (242)
T d1oxxk2           4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVAS   71 (242)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred             EEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeec
Confidence            5667778888  55789999999999999999999999999999999999999999999999998754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.85  E-value=1e-23  Score=139.73  Aligned_cols=66  Identities=26%  Similarity=0.462  Sum_probs=58.7

Q ss_pred             hccccccCCCCCc----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTK----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|+..    .+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++..
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~   71 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND   71 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred             EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCc
Confidence            4567777777532    48999999999999999999999999999999999999999999999998754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.2e-23  Score=140.08  Aligned_cols=66  Identities=26%  Similarity=0.438  Sum_probs=58.8

Q ss_pred             hccccccCCCCCc----cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           9 VDSHLETFPYDTK----PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         9 ~~~~~~~~~~~~~----~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++.|+..    .+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~   71 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT   71 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECT
T ss_pred             EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeee
Confidence            4566777777542    58999999999999999999999999999999999999999999999998753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=5.6e-23  Score=137.44  Aligned_cols=67  Identities=25%  Similarity=0.466  Sum_probs=62.1

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      ++++++++|.|++  .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~   81 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE   81 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccch
Confidence            6888999999964  469999999999999999999999999999999999999999999999988654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.83  E-value=1.4e-22  Score=135.74  Aligned_cols=67  Identities=27%  Similarity=0.593  Sum_probs=62.4

Q ss_pred             hhccccccCCCCC--ccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220           8 TVDSHLETFPYDT--KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus         8 ~~~~~~~~~~~~~--~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+++++++|.|++  .++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~   84 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD   84 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGG
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEccc
Confidence            5889999999965  579999999999999999999999999999999999999999999999988754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.3e-20  Score=127.39  Aligned_cols=53  Identities=21%  Similarity=0.470  Sum_probs=50.2

Q ss_pred             CCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeec
Q psy7220          18 YDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH   70 (80)
Q Consensus        18 ~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~   70 (80)
                      +.++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus        46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~   98 (281)
T d1r0wa_          46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR   98 (281)
T ss_dssp             HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC
T ss_pred             CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCE
Confidence            35679999999999999999999999999999999999999999999999884

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=6.5e-20  Score=120.86  Aligned_cols=52  Identities=27%  Similarity=0.416  Sum_probs=48.0

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .+|+++||+|++||+++|+||||||||||+++|+|+. |++|+|.++|+++..
T Consensus        13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~   64 (231)
T d1l7vc_          13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEA   64 (231)
T ss_dssp             TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGG
T ss_pred             ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCc
Confidence            3799999999999999999999999999999999976 688999999998754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.71  E-value=2.4e-19  Score=119.19  Aligned_cols=57  Identities=25%  Similarity=0.440  Sum_probs=50.1

Q ss_pred             cCCCCCccccceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccccc
Q psy7220          15 TFPYDTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD   74 (80)
Q Consensus        15 ~~~~~~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i~~   74 (80)
                      .++|++..+  |+||++. +|+++|+||||||||||+++|+|+++|++|+|+++|+++.+
T Consensus         8 ~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~   64 (240)
T d2onka1           8 EKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP   64 (240)
T ss_dssp             EEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred             EEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCc
Confidence            456666554  7999995 68999999999999999999999999999999999998764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.01  E-value=6e-12  Score=76.86  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=32.6

Q ss_pred             eeeeecccCCCceeEeeeeeceeecCCCceeeeecc
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS   71 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~   71 (80)
                      .++|+||||||||||+++|+|.++++.|.+...+.+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~   37 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVR   37 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcc
Confidence            378999999999999999999999999999887654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=3.1e-09  Score=64.08  Aligned_cols=35  Identities=31%  Similarity=0.362  Sum_probs=28.3

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+.+.++++.+| +++|+|+|||||||++.+|.-.+
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            456777778776 88899999999999999986443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.6e-07  Score=55.85  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             eeeeecccCCCceeEeeeeeceee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +++|+|++|||||||++.|...+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            688999999999999998875443

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.7e-07  Score=55.88  Aligned_cols=32  Identities=25%  Similarity=0.187  Sum_probs=26.0

Q ss_pred             eeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      .+.|.||+|+|||||++.++..+......+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~   34 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG   34 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence            47899999999999999999887766555543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.01  E-value=3.7e-07  Score=59.28  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +.+|+|||||||||++++|+-
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            788999999999999988743

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.96  E-value=4.1e-07  Score=60.73  Aligned_cols=27  Identities=26%  Similarity=0.628  Sum_probs=22.1

Q ss_pred             eeeccceeeeeecccCCCceeEeeeee
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      +.+..+.+.+|+|+|||||||++.+|+
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            344556688999999999999999874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.95  E-value=3e-07  Score=56.36  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=21.5

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      |.++.|+||+||||||+++.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            7889999999999999998876443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.88  E-value=4.8e-07  Score=53.96  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=22.5

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .|.++.|.|++||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999887543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=5.1e-07  Score=53.81  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=23.4

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +.+.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467889999999999999999987643

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.87  E-value=5.9e-07  Score=58.24  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=25.0

Q ss_pred             cceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY   66 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~   66 (80)
                      +|.+.+++|+||+|||||++.|.+-..-..|+|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            5889999999999999999999875544455554

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.87  E-value=5.3e-07  Score=53.56  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=23.6

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+|-++.|+|++||||||+.+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            478889999999999999999998554

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.78  E-value=7e-07  Score=53.80  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             eeeeecccCCCceeEeeeeeceeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      +++|+|++|||||||+..|...+..
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999877665554

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.78  E-value=5.9e-07  Score=53.37  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ..++|.|+.|||||||.+.|+..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.75  E-value=9.8e-07  Score=52.56  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.5

Q ss_pred             ccceeeeeecccCCCceeEeeeeece
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      |++-.+.|.|++||||||+.+.|+--
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            56777899999999999999999754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.74  E-value=9.7e-07  Score=53.39  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             eeeeeecccCCCceeEeeeeeceee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      =++||.|++|||||||.+.|.-.+.
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3688999999999999998876544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.72  E-value=1.1e-06  Score=53.94  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=19.9

Q ss_pred             eeeecccCCCceeEeeeeece
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++|+|+.|+|||||++.|+|.
T Consensus        26 I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          26 IALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHhcCC
Confidence            899999999999999999875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.70  E-value=1.3e-06  Score=52.05  Aligned_cols=28  Identities=18%  Similarity=0.366  Sum_probs=22.9

Q ss_pred             eeeeeecccCCCceeEeeeeeceeecCC
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIKPTS   62 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~~~~   62 (80)
                      .+++|.|+.||||||+.+.|+-.+....
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~   29 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG   29 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999876554443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.66  E-value=6.4e-07  Score=58.27  Aligned_cols=34  Identities=12%  Similarity=0.255  Sum_probs=22.1

Q ss_pred             cceeeeeecccCCCceeEeeeeeceeecCCCcee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY   66 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~   66 (80)
                      +|...+++|+||+|||||++.|.+-..-..|+|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5778889999999999999999886554555554

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=1.4e-06  Score=50.71  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+.|+||+||||||+.+.|+-.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999988754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.63  E-value=1.9e-06  Score=50.98  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.5

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..++.|.|++||||||+.+.|+..+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4578899999999999999988764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=2.4e-06  Score=53.99  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=20.7

Q ss_pred             cceeeeeecccCCCceeEeeeeec
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .|.++.|+||+|+|||||.+.|.-
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            478899999999999999987643

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.60  E-value=1.8e-06  Score=51.08  Aligned_cols=20  Identities=45%  Similarity=0.416  Sum_probs=17.8

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      +.|+|+.||||||+.+.|+-
T Consensus         7 I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999998864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.59  E-value=2.6e-06  Score=49.89  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=17.8

Q ss_pred             eeeeeecccCCCceeEeeeee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++.|.|++||||||+.+.|.
T Consensus         3 klIii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            467789999999999988663

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.58  E-value=2.5e-06  Score=50.21  Aligned_cols=24  Identities=33%  Similarity=0.517  Sum_probs=20.2

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++.|.||+||||||+.+.|+..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            367899999999999998887643

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.57  E-value=3.5e-06  Score=56.66  Aligned_cols=36  Identities=25%  Similarity=0.230  Sum_probs=28.4

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      +.+..+.|.|+.|||||||+++|.+.+++..=-+.+
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            444557899999999999999999998875544444

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=3.2e-06  Score=52.54  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=19.6

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++||.|++||||||+.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999998875543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.52  E-value=3.8e-06  Score=50.99  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=19.8

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +||+|+.++|||||++.|+|-.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~~   25 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSAK   25 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEEC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=1.6e-06  Score=52.43  Aligned_cols=26  Identities=46%  Similarity=0.523  Sum_probs=22.5

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +|-++.|+|++||||||+.+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57788899999999999999997544

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.45  E-value=4.9e-06  Score=51.83  Aligned_cols=21  Identities=29%  Similarity=0.324  Sum_probs=18.6

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +++|+|+.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999988864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=4.9e-06  Score=49.83  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=22.6

Q ss_pred             eeccceeeeeecccCCCceeEeeeee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      -+++|+++.|.||+|+|||||+..++
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la   44 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLA   44 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHH
Confidence            37899999999999999999976554

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.45  E-value=5.5e-06  Score=49.24  Aligned_cols=26  Identities=38%  Similarity=0.516  Sum_probs=21.1

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +.-.++|+|++|+|||||++.|.+-.
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33468899999999999999987754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.41  E-value=4.8e-06  Score=50.12  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|++++|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=5.5e-06  Score=50.94  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=17.5

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++|+||+||||||+++.|..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999987753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=5.5e-06  Score=49.71  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=19.6

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|+.++|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998744

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.40  E-value=6.6e-06  Score=50.29  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             cceeeeeecccCCCceeEeeeeec
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +..++.|+||.||||||+.+.|+-
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446789999999999999988864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=7.7e-06  Score=48.77  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|+.++|||||++.|.+..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998853

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=6.1e-06  Score=49.43  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +++|+|.+++|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=6.3e-06  Score=50.95  Aligned_cols=20  Identities=45%  Similarity=0.501  Sum_probs=17.4

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++|+||+||||||+.+.|.-
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999987753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.33  E-value=6.4e-06  Score=49.80  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=19.8

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++|+|..++|||||++.|+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999998753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=8.3e-06  Score=49.98  Aligned_cols=27  Identities=30%  Similarity=0.279  Sum_probs=22.2

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++-.++.|+||.||||||..+.|+--+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            345578999999999999999887543

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.30  E-value=9.1e-06  Score=49.55  Aligned_cols=24  Identities=42%  Similarity=0.416  Sum_probs=21.4

Q ss_pred             ccceeeeeecccCCCceeEeeeee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      |+|-.+.|+||.||||||..+.|+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            466778899999999999999998

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.30  E-value=6.6e-06  Score=50.51  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=22.8

Q ss_pred             eccceeeeeecccCCCceeEeeeeec
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++++.++.|+||.||||||..+.|+-
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            46778899999999999999998864

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=7.8e-06  Score=47.42  Aligned_cols=22  Identities=45%  Similarity=0.622  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|++++|||||++.|.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4679999999999999988763

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.29  E-value=9.1e-06  Score=49.09  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.2

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +++|+|+.|+|||||++.|.|-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998874

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=1.2e-05  Score=48.60  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.3

Q ss_pred             ceeeeeecccCCCceeEeeeeece
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +=.++|+|+.++|||||++.|.|-
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            345899999999999999888763

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=1.9e-05  Score=50.81  Aligned_cols=32  Identities=19%  Similarity=0.272  Sum_probs=23.8

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      +=++++++ +...++.|.|||.+||||++|.++
T Consensus        31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             cceeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence            44555554 234577889999999999999764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.28  E-value=1.3e-05  Score=50.56  Aligned_cols=25  Identities=28%  Similarity=0.278  Sum_probs=21.2

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ...+.|.||+||||||+.+.|++..
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3347789999999999999998765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=8.7e-06  Score=49.73  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+.++|||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.27  E-value=1e-05  Score=48.19  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=20.5

Q ss_pred             eeeeecccCCCceeEeeeeeceee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      ++.|.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999976553

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=1.1e-05  Score=49.57  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=18.7

Q ss_pred             eeeeeecccCCCceeEeeeeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ..+.|+||+|+||+|+++.|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999987653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.26  E-value=8.7e-06  Score=47.63  Aligned_cols=22  Identities=45%  Similarity=0.555  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|..|+|||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=1.1e-05  Score=47.52  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=20.6

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      =.++|+|+.++|||||++.|.|.-
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999987653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=2e-05  Score=50.32  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=21.7

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      ++-++..++.++||+|+||||.+-=|+-.+.
T Consensus         4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             CCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3334456788999999999987754554443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.25  E-value=9.2e-06  Score=47.33  Aligned_cols=22  Identities=36%  Similarity=0.419  Sum_probs=18.8

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+.|+|+.|+|||||++.+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3679999999999999988653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.25  E-value=1.9e-05  Score=50.23  Aligned_cols=27  Identities=37%  Similarity=0.555  Sum_probs=20.5

Q ss_pred             cceeeeeecccCCCceeEeeeeeceee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      ++.++.++||+|+||||.+-=|+..+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567889999999999987644554443

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.23  E-value=1.7e-05  Score=48.36  Aligned_cols=26  Identities=23%  Similarity=0.138  Sum_probs=22.2

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +.-+++|-|+.||||||+++.|...+
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            44579999999999999999998654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=1.6e-05  Score=49.49  Aligned_cols=26  Identities=27%  Similarity=0.252  Sum_probs=22.7

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++.+++|-|+.||||||+++.|+..+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998755

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.22  E-value=1e-05  Score=49.38  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=18.8

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+.|+||.||||||+.+.|+--
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4779999999999999988643

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.21  E-value=1.4e-05  Score=48.78  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=18.5

Q ss_pred             eeeeeecccCCCceeEeeeee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~   55 (80)
                      =++||.|+.||||||+.+.|.
T Consensus         4 ~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999998775

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.20  E-value=1.2e-05  Score=48.35  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=18.9

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +.|+|+.||||||+.+.|+-.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999987543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=2.5e-05  Score=49.89  Aligned_cols=24  Identities=33%  Similarity=0.430  Sum_probs=18.2

Q ss_pred             ccceeeeeecccCCCceeEeeeee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .+..++.++||+|+||||.+-=|+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            455578889999999998764444

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=1.6e-05  Score=48.62  Aligned_cols=35  Identities=26%  Similarity=0.255  Sum_probs=25.3

Q ss_pred             eccceeeeeecccCCCceeEeeeeeceeecCCCceeeee
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN   69 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~   69 (80)
                      -++.+.+.++|++||||||+.+-+.-    ..|.+.++.
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~----~~~~~~i~~   45 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV----SAGYVHVNR   45 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG----GGTCEEEEH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH----hcCCEEEch
Confidence            35677889999999999999876642    234455543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.18  E-value=1.2e-05  Score=48.43  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=18.3

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+.|+|+.||||||+.+.|+-
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999999874

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.15  E-value=1.5e-05  Score=48.52  Aligned_cols=23  Identities=35%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++.++|.+||||||+.+.|+..+
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57889999999999999888544

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.14  E-value=3.8e-05  Score=47.80  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=20.6

Q ss_pred             eccceeeeeecccCCCceeEee
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFK   52 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~   52 (80)
                      +++|+++.|.|++|+|||||.-
T Consensus        33 lp~G~~~li~G~pGsGKT~~~l   54 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAH   54 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHH
Confidence            8899999999999999999864

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.12  E-value=4.8e-05  Score=48.43  Aligned_cols=27  Identities=33%  Similarity=0.301  Sum_probs=16.0

Q ss_pred             cceeeeeecccCCCceeEeeeeeceee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      ...++.++||+|+||||.+-=|+-.+.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456788999999999988644444333

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.11  E-value=1.6e-05  Score=47.63  Aligned_cols=21  Identities=43%  Similarity=0.517  Sum_probs=18.2

Q ss_pred             eeeecccCCCceeEeeeeece
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.|+|+.||||||+.+.|+-.
T Consensus         4 IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999988754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=1.8e-05  Score=48.18  Aligned_cols=21  Identities=33%  Similarity=0.339  Sum_probs=18.7

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++.|+||.||||||..+.|+-
T Consensus         3 iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999988864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=2e-05  Score=48.81  Aligned_cols=26  Identities=35%  Similarity=0.552  Sum_probs=22.3

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +|.+++|-|+.||||||+++.|...+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998877543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=4.1e-05  Score=47.07  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=21.9

Q ss_pred             eeccceeeeeecccCCCceeEeeee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l   54 (80)
                      -+++|.++-|.|+.|+|||||..-+
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~   54 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTL   54 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHH
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHH
Confidence            3889999999999999999997533

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.09  E-value=2.8e-05  Score=49.75  Aligned_cols=22  Identities=32%  Similarity=0.297  Sum_probs=18.8

Q ss_pred             ceeeeeecccCCCceeEeeeee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .+++.|.|||.+||||++|.+.
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhH
Confidence            3578899999999999998664

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.08  E-value=2.7e-05  Score=46.14  Aligned_cols=23  Identities=43%  Similarity=0.596  Sum_probs=20.0

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|+.|+|||||++.|.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47799999999999999987754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.08  E-value=1.9e-05  Score=47.33  Aligned_cols=21  Identities=43%  Similarity=0.613  Sum_probs=18.1

Q ss_pred             eeeecccCCCceeEeeeeece
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.|+||.||||||..+.|+--
T Consensus         3 I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999988543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=2.2e-05  Score=48.07  Aligned_cols=30  Identities=30%  Similarity=0.273  Sum_probs=23.3

Q ss_pred             eeeeecccCCCceeEeeeee---ceeecCCCce
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT---GAIKPTSGNA   65 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~---gl~~~~~G~i   65 (80)
                      +++|.||.||||+|..+.|+   |+..-+.|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            78899999999999999886   4444445554

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.03  E-value=2.3e-05  Score=47.44  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=18.8

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+.|+||.||||||..+.|+--
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999988754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.03  E-value=9e-06  Score=47.91  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.8

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|..++|||||++.|.|-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=2.7e-05  Score=48.88  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=23.0

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++|-+++|-|+.||||||+.+.|...+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999988876644

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=6.6e-05  Score=46.48  Aligned_cols=26  Identities=23%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             eeccceeeeeecccCCCceeEeeeee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      -+++|.++.|.|++|+|||+|...++
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999999975543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.99  E-value=2.7e-05  Score=48.06  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.4

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      +++|-||.||||||..+.|+-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999999974

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.98  E-value=5.4e-05  Score=47.94  Aligned_cols=27  Identities=41%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             cceeeeeecccCCCceeEeeeeeceee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +..++.++||+|+||||.+-=|+-.+.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456788999999999988755654443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=3e-05  Score=46.73  Aligned_cols=21  Identities=33%  Similarity=0.308  Sum_probs=18.1

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+.|+||.||||||..+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999988864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.93  E-value=4.4e-05  Score=50.75  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=18.0

Q ss_pred             eeeeecccCCCceeEeeeeeceee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      ++||.|++||||||+.+.|...+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            799999999999999988776554

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.92  E-value=7.8e-05  Score=45.65  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=22.1

Q ss_pred             eccceeeeeecccCCCceeEeeeee
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      +++|+++.|.|++|+|||+|..-++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8899999999999999999975543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.92  E-value=3.8e-05  Score=47.66  Aligned_cols=20  Identities=45%  Similarity=0.591  Sum_probs=17.9

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      ++||.|..||||||+.+++.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999988774

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.92  E-value=4.4e-05  Score=47.98  Aligned_cols=42  Identities=24%  Similarity=0.194  Sum_probs=29.2

Q ss_pred             eccceeeeeecccCCCceeEeeeeeceeec--CCCceeeeeccc
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSI   72 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~~~--~~G~i~~~~~~i   72 (80)
                      =++|-++-|.|.+||||||+.+.|.-.+..  ..-.+.++|..+
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            367889999999999999999988643321  123445555443

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.91  E-value=3.4e-05  Score=45.84  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=19.6

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      =.+.|+|..|||||||++.|.+-
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35789999999999999988764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=3.9e-05  Score=51.32  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.8

Q ss_pred             eeeeeecccCCCceeEeeeeeceee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      =++||.|++|||||||.+.|..++.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            4799999999999999998887664

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.90  E-value=3.6e-05  Score=49.63  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|.+|+|||||++.|.|-.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58899999999999999998853

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.89  E-value=8e-05  Score=45.48  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=21.0

Q ss_pred             eeccceeeeeecccCCCceeEee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFK   52 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~   52 (80)
                      -+++|+++.|.|++|+|||+|..
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~   44 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSI   44 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHH
Confidence            38899999999999999999974

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=3.9e-05  Score=51.54  Aligned_cols=35  Identities=26%  Similarity=0.297  Sum_probs=25.3

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +|+.+.-.-.+.-++||.|+.|+|||||+..|...
T Consensus        43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence            34333323345777999999999999999888643

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.86  E-value=3.9e-05  Score=46.27  Aligned_cols=22  Identities=41%  Similarity=0.351  Sum_probs=18.6

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+.|+||.||||||..+.|+--
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999988643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=4.4e-05  Score=47.92  Aligned_cols=26  Identities=35%  Similarity=0.523  Sum_probs=22.7

Q ss_pred             cceeeeeecccCCCceeEeeeeecee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +|.+++|-|+.||||||+.+.|.-.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence            68899999999999999998886443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.83  E-value=4e-05  Score=46.49  Aligned_cols=22  Identities=41%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++|+|+..+|||||++.|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            3899999999999999999863

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=4.8e-05  Score=47.70  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..+.|.||+|+||||++++++...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            357789999999999999998753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=3.9e-05  Score=47.10  Aligned_cols=21  Identities=33%  Similarity=0.396  Sum_probs=18.7

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|+|+.++|||||++.|.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999988865

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=4.7e-05  Score=46.06  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=18.6

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+.|+||.||||||+.+.|+--
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3668999999999999988743

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.00018  Score=42.95  Aligned_cols=20  Identities=30%  Similarity=0.436  Sum_probs=8.4

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      +.++|..|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999986664

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=6.4e-05  Score=51.40  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.6

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .++|+|.+|+|||||++.|.|..
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999998853

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=6.1e-05  Score=46.86  Aligned_cols=20  Identities=30%  Similarity=0.393  Sum_probs=18.2

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      ++||.|..||||||..+++.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            68999999999999999775

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.76  E-value=9.8e-05  Score=45.94  Aligned_cols=25  Identities=20%  Similarity=0.191  Sum_probs=22.3

Q ss_pred             eccceeeeeecccCCCceeEeeeee
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      +++|..+.|.|++|+|||+|+.-++
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia   47 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFV   47 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999985554

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.74  E-value=6.1e-05  Score=48.03  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             CccccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          20 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        20 ~~~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      +-+-|++...-+.+|+++.|.|++|+|||||+.-++
T Consensus        21 G~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             SCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            345677666668999999999999999999976665

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.74  E-value=5.1e-05  Score=47.30  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=19.6

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+-|.||+|+||||++++++..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            36789999999999999987643

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.73  E-value=5.2e-05  Score=45.02  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=17.8

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|+.++|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            367899999999999987754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.70  E-value=7e-05  Score=44.60  Aligned_cols=21  Identities=52%  Similarity=0.646  Sum_probs=18.6

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|+.|+|||||++.+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999998755

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.68  E-value=6.5e-05  Score=46.19  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=18.5

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+.|+||.||||||+.+.|+-
T Consensus         8 rIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999998874

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=6.3e-05  Score=46.98  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=20.4

Q ss_pred             eeeeecccCCCceeEeeeeeceee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .+-+.||.|+||||+.++++..+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHhccC
Confidence            366899999999999999986654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=7.1e-05  Score=49.38  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=20.5

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .-+.++||+|+|||.|.++|+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhcc
Confidence            455689999999999999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=6.6e-05  Score=44.76  Aligned_cols=20  Identities=30%  Similarity=0.434  Sum_probs=17.6

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++++|+.|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            77999999999999987653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.64  E-value=7.7e-05  Score=46.38  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             cceeeeeecccCCCceeEeeeeec
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+.++.|.||.|+|||||++.++.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            567888999999999999986653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=6.8e-05  Score=46.49  Aligned_cols=21  Identities=38%  Similarity=0.472  Sum_probs=18.9

Q ss_pred             eeeecccCCCceeEeeeeece
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.|.||+|+||||++++++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            678999999999999999865

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.63  E-value=0.00017  Score=49.26  Aligned_cols=28  Identities=21%  Similarity=0.202  Sum_probs=22.6

Q ss_pred             ccceeeeeecccCCCceeEeeeeeceee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .+...+.|.||+||||||++..+...+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4556788999999999999988776553

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.62  E-value=6.8e-05  Score=44.76  Aligned_cols=20  Identities=20%  Similarity=0.277  Sum_probs=17.6

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++++|+.|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999987653

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.62  E-value=8.7e-05  Score=44.62  Aligned_cols=23  Identities=43%  Similarity=0.473  Sum_probs=19.2

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -.+.++|+.|+|||||++.+.+-
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35779999999999999887643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.62  E-value=7.6e-05  Score=45.55  Aligned_cols=23  Identities=39%  Similarity=0.664  Sum_probs=19.6

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +++|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999887544

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=7.3e-05  Score=44.42  Aligned_cols=20  Identities=25%  Similarity=0.376  Sum_probs=17.6

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++++|+.|+|||||++.+.+
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999987654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.57  E-value=7.4e-05  Score=46.74  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=19.8

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+-+.||.|+||||+.+++++..
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999998754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.54  E-value=8.4e-05  Score=45.50  Aligned_cols=29  Identities=31%  Similarity=0.216  Sum_probs=24.6

Q ss_pred             eeccceeeeeecccCCCceeEeeeeecee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..++|.++.+-|+=|||||||.|.++.-+
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            34789999999999999999998876443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=9e-05  Score=44.45  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=17.8

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|+.|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999986643

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.47  E-value=0.00015  Score=44.96  Aligned_cols=26  Identities=38%  Similarity=0.399  Sum_probs=21.9

Q ss_pred             eeeeeecccCCCceeEeeeeeceeec
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIKP   60 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~~   60 (80)
                      ..+.|.||.|+||||+++.++..+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhc
Confidence            46779999999999999999876643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.0001  Score=43.63  Aligned_cols=19  Identities=16%  Similarity=0.335  Sum_probs=16.7

Q ss_pred             eeeecccCCCceeEeeeee
Q psy7220          37 FGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~   55 (80)
                      ++++|+.|+|||||++-+.
T Consensus         5 v~liG~~~vGKSsLi~rl~   23 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYC   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7799999999999997554

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.0001  Score=43.64  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=17.5

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++++|.+|+|||||++.+..
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999987654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00012  Score=43.45  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=17.3

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|..|+|||||++-+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            367999999999999976543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00012  Score=44.06  Aligned_cols=20  Identities=40%  Similarity=0.401  Sum_probs=17.2

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++|+|+.|+|||||++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            77999999999999976653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00011  Score=43.56  Aligned_cols=20  Identities=20%  Similarity=0.353  Sum_probs=17.8

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++|+|+.|+|||||++.+.
T Consensus         6 Kv~liG~~~vGKTsLl~~~~   25 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFV   25 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            58899999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.00012  Score=43.84  Aligned_cols=19  Identities=26%  Similarity=0.508  Sum_probs=16.9

Q ss_pred             eeeecccCCCceeEeeeee
Q psy7220          37 FGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~   55 (80)
                      ++++|+.|+|||||++.+.
T Consensus         6 ivvvG~~~vGKTsli~r~~   24 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFT   24 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            6799999999999998664

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00013  Score=43.44  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=18.6

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++++|..|+|||||++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6799999999999998887653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00012  Score=43.65  Aligned_cols=20  Identities=20%  Similarity=0.270  Sum_probs=17.3

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++|+|..|+|||||++.+.
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~   26 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFI   26 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999997654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00017  Score=43.16  Aligned_cols=21  Identities=38%  Similarity=0.347  Sum_probs=17.4

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|+.|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.37  E-value=0.00012  Score=44.06  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=16.9

Q ss_pred             eeeecccCCCceeEeeeee
Q psy7220          37 FGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~   55 (80)
                      ++++|..|+|||||++.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~   23 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYV   23 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            6799999999999997665

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00012  Score=43.59  Aligned_cols=21  Identities=33%  Similarity=0.427  Sum_probs=18.1

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+.|+|..|+|||||++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987754

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.00016  Score=47.80  Aligned_cols=21  Identities=24%  Similarity=0.183  Sum_probs=18.2

Q ss_pred             eeeeeecccCCCceeEeeeee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~   55 (80)
                      =++||.|+.|||||||.+.|.
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeECCCCCCHHHHHHHHH
Confidence            478999999999999987664

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.00014  Score=42.97  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=17.9

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            368999999999999987653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.00014  Score=43.09  Aligned_cols=21  Identities=24%  Similarity=0.287  Sum_probs=17.7

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++|+|..|+|||||++.+.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999976643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.00015  Score=45.24  Aligned_cols=21  Identities=38%  Similarity=0.464  Sum_probs=18.6

Q ss_pred             eeeecccCCCceeEeeeeece
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.|.||.|+||||+.++++..
T Consensus        36 lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            669999999999999988754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.29  E-value=0.00017  Score=43.04  Aligned_cols=21  Identities=43%  Similarity=0.466  Sum_probs=18.3

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+.++|+.++|||||++.+..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            477899999999999988764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.29  E-value=0.00015  Score=45.64  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +++|+|...+|||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            4899999999999999988753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.00016  Score=43.35  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=17.5

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+.|+|.+|+|||||++.+..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            467999999999999976653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.00016  Score=42.85  Aligned_cols=20  Identities=25%  Similarity=0.469  Sum_probs=17.2

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++|+|..|+|||||++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999976653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.00021  Score=46.21  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=21.8

Q ss_pred             cceeeeeeccceeeeeecccCCCceeEeeeeecee
Q psy7220          24 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        24 l~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++.+....++  -+-+.||.|+|||++.+.|+...
T Consensus        37 ~~~~g~~~~~--~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          37 FQKLGGKIPK--GVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             C-----CCCC--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHcCCCCCC--eEEeeCCCCCCccHHHHHHHHHc
Confidence            3443333333  36689999999999999998754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.21  E-value=0.00022  Score=47.66  Aligned_cols=26  Identities=38%  Similarity=0.622  Sum_probs=21.7

Q ss_pred             ccceeeeeecccCCCceeEeeeeece
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .+.-.+||.|+.|+|||||+..|...
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHH
Confidence            45667999999999999999887653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.21  E-value=0.0002  Score=42.42  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=17.3

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++|+|..|+|||||++-+.
T Consensus         6 Ki~lvG~~~vGKTsli~rl~   25 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFV   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            37799999999999997664

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.00018  Score=42.70  Aligned_cols=19  Identities=32%  Similarity=0.272  Sum_probs=16.8

Q ss_pred             eeeecccCCCceeEeeeee
Q psy7220          37 FGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~   55 (80)
                      +.|+|..|+|||||++.+.
T Consensus         6 ivlvG~~~vGKTsLi~r~~   24 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYC   24 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            6799999999999998654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.18  E-value=0.00017  Score=45.00  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            35567999999999999988654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.00018  Score=42.37  Aligned_cols=19  Identities=21%  Similarity=0.197  Sum_probs=16.9

Q ss_pred             eeeecccCCCceeEeeeee
Q psy7220          37 FGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~   55 (80)
                      +.++|..|+|||||++.+.
T Consensus         5 v~liG~~~vGKTsLl~~~~   23 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFC   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            6799999999999998665

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.00018  Score=44.60  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=18.6

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +-|.||.|+||||+.++++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            5689999999999999887543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00025  Score=42.43  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=18.3

Q ss_pred             eeeecccCCCceeEeeeeece
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +.++|..|+|||||++.+.+.
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999877654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.16  E-value=0.00018  Score=42.86  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=21.7

Q ss_pred             eeeeecccCCCceeEeeeeeceeecCCC
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPTSG   63 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G   63 (80)
                      .+.++|..|+|||||++-+..-..|+.|
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            4679999999999999876544455555

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.11  E-value=0.00019  Score=45.99  Aligned_cols=22  Identities=23%  Similarity=0.156  Sum_probs=19.3

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      -+-|.||.|+|||++.+.++..
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            3668999999999999999865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.00021  Score=43.59  Aligned_cols=20  Identities=25%  Similarity=0.449  Sum_probs=17.5

Q ss_pred             eeeecccCCCceeEeeeeec
Q psy7220          37 FGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999986653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.00021  Score=42.85  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.2

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+.++|..|+|||||++.+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            377999999999999997754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.00025  Score=42.25  Aligned_cols=19  Identities=32%  Similarity=0.448  Sum_probs=16.5

Q ss_pred             eeeecccCCCceeEeeeee
Q psy7220          37 FGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~   55 (80)
                      ++++|+.++|||||++.+.
T Consensus         9 I~vvG~~~vGKSSli~~~~   27 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYV   27 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7799999999999996553

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.00036  Score=41.90  Aligned_cols=28  Identities=36%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             eeeeecccCCCceeEeeeeece--eecCCC
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA--IKPTSG   63 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl--~~~~~G   63 (80)
                      .+.|+|..|+|||||++-+.-.  ..|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            4679999999999999877311  236666

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.00023  Score=42.53  Aligned_cols=20  Identities=20%  Similarity=0.260  Sum_probs=17.2

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++|+|..|+|||||++-+.
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~   27 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFI   27 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            47899999999999997654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.00023  Score=42.37  Aligned_cols=19  Identities=26%  Similarity=0.530  Sum_probs=17.1

Q ss_pred             eeeecccCCCceeEeeeee
Q psy7220          37 FGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~   55 (80)
                      ++++|..|+|||||++.+.
T Consensus         8 I~lvG~~~vGKTsll~~~~   26 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFI   26 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999998765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.00027  Score=45.58  Aligned_cols=28  Identities=21%  Similarity=0.240  Sum_probs=22.0

Q ss_pred             eccceeeeeecccCCCceeEeeeeecee
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++...-+-|.||.|+|||+|.+++++..
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            3334446799999999999999998754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.00024  Score=42.14  Aligned_cols=20  Identities=25%  Similarity=0.310  Sum_probs=17.1

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++++|..|+|||||++-+.
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~   24 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            46799999999999998654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.99  E-value=0.00025  Score=46.58  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=21.4

Q ss_pred             eeeeeecccCCCceeEeeeeeceee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      .-+-|.|+.|+||||+++.++++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCC
Confidence            4567899999999999999987764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.00031  Score=41.69  Aligned_cols=20  Identities=25%  Similarity=0.318  Sum_probs=17.3

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .+.++|..|+|||||++.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~   27 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            36799999999999997765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.00027  Score=43.67  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=18.7

Q ss_pred             eeeecccCCCceeEeeeeece
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl   57 (80)
                      +-|.||.|+||||++++++..
T Consensus        38 lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHH
Confidence            568999999999999999864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.00041  Score=41.22  Aligned_cols=19  Identities=21%  Similarity=0.459  Sum_probs=16.8

Q ss_pred             eeeecccCCCceeEeeeee
Q psy7220          37 FGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~   55 (80)
                      +.++|+.|+|||+|++-+.
T Consensus         5 i~lvG~~~vGKTsli~r~~   23 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFL   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6799999999999997665

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.00032  Score=43.61  Aligned_cols=24  Identities=29%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+++|=|+-||||||+++.|.-.+
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            478899999999999999887543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.93  E-value=0.00032  Score=45.77  Aligned_cols=24  Identities=29%  Similarity=0.576  Sum_probs=21.2

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      -.+||+|..-+||||||++|++.-
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHST
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCC
Confidence            458999999999999999998753

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.89  E-value=0.00046  Score=43.05  Aligned_cols=28  Identities=36%  Similarity=0.387  Sum_probs=21.5

Q ss_pred             eeeeecccCCCceeEeeee-eceeecCCC
Q psy7220          36 CFGLLGLNGAGKTTTFKML-TGAIKPTSG   63 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l-~gl~~~~~G   63 (80)
                      .+.++|.+|+|||||++-+ .+-..|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            5789999999999998765 344456666

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.88  E-value=0.00037  Score=43.45  Aligned_cols=20  Identities=30%  Similarity=0.373  Sum_probs=18.4

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      ++||.|.-||||||..++|.
T Consensus         3 iIgiTG~igSGKsTva~~l~   22 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIM   22 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999884

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.00044  Score=44.94  Aligned_cols=41  Identities=22%  Similarity=0.321  Sum_probs=28.5

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCCc-eeeeec
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-AYVMNH   70 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~-i~~~~~   70 (80)
                      -+++|.++-|.||+|+|||||+-.++-......+. ++++.+
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            57899999999999999999975554433323343 455543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.00038  Score=43.97  Aligned_cols=30  Identities=23%  Similarity=0.224  Sum_probs=23.1

Q ss_pred             cccceeeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          22 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        22 ~vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++++    +.+|+++.|.|+.|+|||||+-.|+
T Consensus        21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEETT----EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             HHhCC----ccCCcEEEEEeCCCCCHHHHHHHHH
Confidence            35554    3469999999999999999985443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.85  E-value=0.00033  Score=45.72  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=19.6

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+||+|..-+||||||++|+|..
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            37999999999999999998863

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.81  E-value=0.00028  Score=49.01  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=22.1

Q ss_pred             eccceeeeeecccCCCceeEeeeeecee
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +.+. -+-++||+|||||-|.+.|++++
T Consensus        47 i~ks-NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          47 VTPK-NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCCC-CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cccc-cEEEECCCCCCHHHHHHHHHHHh
Confidence            4444 46689999999999999999865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.00052  Score=40.56  Aligned_cols=20  Identities=25%  Similarity=0.351  Sum_probs=17.1

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++++|..|+|||+|++-+.
T Consensus         5 KivvvG~~~vGKTsli~r~~   24 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36799999999999998664

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.77  E-value=0.00054  Score=41.25  Aligned_cols=19  Identities=21%  Similarity=0.340  Sum_probs=16.2

Q ss_pred             eeeeecccCCCceeEeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l   54 (80)
                      .+.++|..|+|||+|++-+
T Consensus         4 KivliG~~~vGKTsli~r~   22 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVF   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4679999999999998644

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.76  E-value=0.00035  Score=41.59  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=17.4

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .+.++|..|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367899999999999986643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.00036  Score=41.40  Aligned_cols=19  Identities=32%  Similarity=0.419  Sum_probs=16.7

Q ss_pred             eeeecccCCCceeEeeeee
Q psy7220          37 FGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~   55 (80)
                      ++++|+.++|||||++.+.
T Consensus         9 i~vvG~~~vGKTsli~~~~   27 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFK   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999998653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.00047  Score=45.67  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=28.1

Q ss_pred             eeeeeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220          26 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      |.=+.|-+|+..+|+|+.|+|||||+..++.-..
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            3345788999999999999999999988876443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.74  E-value=0.00035  Score=44.81  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.5

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +-+.||.|+|||++.+.++...
T Consensus        45 iLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEecCCCCChhHHHHHHHHHc
Confidence            6789999999999999998653

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.72  E-value=0.00045  Score=44.27  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=24.6

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeeeece
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++......++|  +-|.||.|+|||++.++++..
T Consensus        29 ~~~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          29 LFKAIGVKPPRG--ILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             HHHHCCCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHhCCCCCCce--eEEecCCCCCchHHHHHHHHH
Confidence            344444444555  668999999999999999874

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.00046  Score=41.63  Aligned_cols=19  Identities=21%  Similarity=0.237  Sum_probs=16.6

Q ss_pred             eeeecccCCCceeEeeeee
Q psy7220          37 FGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~   55 (80)
                      ++|+|..|+|||||++.+.
T Consensus        12 i~lvG~~~vGKTsLi~r~~   30 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYA   30 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999997654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.70  E-value=0.0016  Score=40.23  Aligned_cols=31  Identities=26%  Similarity=0.270  Sum_probs=22.5

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeeee
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~l   54 (80)
                      .++..-+.+ .|.-+.|.|++|+||||+...|
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l   35 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDL   35 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHH
Confidence            445555555 5666789999999999987443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.69  E-value=0.00039  Score=41.36  Aligned_cols=20  Identities=20%  Similarity=0.263  Sum_probs=17.3

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .+.|+|..|+|||||++.+.
T Consensus         6 KivlvG~~~vGKTsli~~~~   25 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFM   25 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            47799999999999998654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.00054  Score=41.11  Aligned_cols=20  Identities=25%  Similarity=0.199  Sum_probs=17.2

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++|+|..|+|||||++.+.
T Consensus         7 KivviG~~~vGKTsli~~~~   26 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYT   26 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999997554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.57  E-value=0.00051  Score=44.89  Aligned_cols=41  Identities=24%  Similarity=0.411  Sum_probs=29.1

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCCc-eeeeec
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-AYVMNH   70 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~-i~~~~~   70 (80)
                      -++.|.++-|.||+|+|||||+-.++.......|. ++++.+
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE   97 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE   97 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence            68899999999999999999975554433333444 444443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.57  E-value=0.00068  Score=44.21  Aligned_cols=40  Identities=25%  Similarity=0.431  Sum_probs=29.1

Q ss_pred             eeccceeeeeecccCCCceeEeeeeeceeecCCCc-eeeee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-AYVMN   69 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~-i~~~~   69 (80)
                      -++.|.++-|.||+|||||||...++.......|. ++++.
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDt   93 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA   93 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEEC
Confidence            56899999999999999999986665544433343 44444

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.00074  Score=40.81  Aligned_cols=20  Identities=25%  Similarity=0.199  Sum_probs=16.8

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++++|..|+|||||++.+.
T Consensus         5 KvvllG~~~vGKTSli~r~~   24 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYT   24 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            47899999999999986553

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.00066  Score=44.83  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+.++||+|+|||.|.+.|+..+
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhhc
Confidence            56799999999999999998765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.00083  Score=40.47  Aligned_cols=21  Identities=24%  Similarity=0.408  Sum_probs=17.5

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .++++|..|+|||||++-+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999985543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.48  E-value=0.00051  Score=46.48  Aligned_cols=31  Identities=19%  Similarity=0.205  Sum_probs=26.8

Q ss_pred             eeeccceeeeeecccCCCceeEeeeeeceee
Q psy7220          29 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        29 l~i~~g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      -.++++.++.+.||.|+|||+|.+.|+....
T Consensus       149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             hCCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3668888999999999999999999987653

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.00072  Score=44.18  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      =.+++|+||-++|||||++.|.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC
Confidence            3578899999999999999988754

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.36  E-value=0.00062  Score=41.48  Aligned_cols=21  Identities=48%  Similarity=0.651  Sum_probs=19.2

Q ss_pred             eeeecccCCCceeEeeeeece
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl   57 (80)
                      ++|+|.-.+|||||++.|.|.
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~   28 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGV   28 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEeccCCcHHHHHHHHHhh
Confidence            689999999999999999874

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.31  E-value=0.00068  Score=43.73  Aligned_cols=23  Identities=43%  Similarity=0.590  Sum_probs=20.4

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+||||-.-+||||||++|++..
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999998653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.001  Score=39.61  Aligned_cols=20  Identities=35%  Similarity=0.438  Sum_probs=17.1

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .+.++|..|+|||||++-+.
T Consensus         4 Kiv~lG~~~vGKTsll~r~~   23 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMR   23 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            46789999999999997664

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.21  E-value=0.00082  Score=45.40  Aligned_cols=27  Identities=26%  Similarity=0.453  Sum_probs=21.1

Q ss_pred             eccceeeeeecccCCCceeEeeeeecee
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++++. +-++||+|+|||-+.+.|+.+.
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            34554 4579999999999999887653

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.19  E-value=0.00079  Score=43.54  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++++|.-.||||||+++|.|..
T Consensus        27 ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          27 IVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEECSSSSHHHHHHHHHTSC
T ss_pred             EEEEeCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999965

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.10  E-value=0.0012  Score=42.46  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++++|.-.||||||+++|.|..
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7799999999999999999965

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.01  E-value=0.0037  Score=38.47  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=20.4

Q ss_pred             ccceeeeeeccceeeeeecccCCCceeEeee
Q psy7220          23 AVNQISFGVGRGECFGLLGLNGAGKTTTFKM   53 (80)
Q Consensus        23 vl~~isl~i~~g~~~~iiG~nGsGKsTll~~   53 (80)
                      .++..-+.+ .|.=+.|.|++|+||||+.-.
T Consensus         4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~   33 (176)
T d1kkma_           4 SMHGVLVDI-YGLGVLITGDSGVGKSETALE   33 (176)
T ss_dssp             EEEEEEEEE-TTEEEEEECCTTSCHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHH
Confidence            344444433 455577999999999998643

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.00  E-value=0.0037  Score=34.81  Aligned_cols=21  Identities=38%  Similarity=0.349  Sum_probs=17.7

Q ss_pred             eccceeeeeecccCCCceeEe
Q psy7220          31 VGRGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll   51 (80)
                      +++|+.+.|..|.|||||...
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            468899999999999999543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.91  E-value=0.0018  Score=43.24  Aligned_cols=47  Identities=19%  Similarity=0.070  Sum_probs=29.4

Q ss_pred             ceeeeeeccceeeeeecccCCCceeEeeeeeceeecCCCceeeeeccc
Q psy7220          25 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI   72 (80)
Q Consensus        25 ~~isl~i~~g~~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~~~~~i   72 (80)
                      +.+-...++| ++.+.||.|+|||.+.+.|++.......-+.+.+.++
T Consensus       115 ~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~  161 (321)
T d1w44a_         115 EFGGHRYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEP  161 (321)
T ss_dssp             EETTEEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCS
T ss_pred             HHhhcccCCc-eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHh
Confidence            3333444555 4445799999999999999986532222344555443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.60  E-value=0.0015  Score=42.48  Aligned_cols=19  Identities=42%  Similarity=0.594  Sum_probs=17.4

Q ss_pred             eeeeecccCCCceeEeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l   54 (80)
                      .++|+|+.|+|||||...|
T Consensus         4 Nv~iiGh~~~GKTtL~e~l   22 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEAL   22 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHH
Confidence            4789999999999999877

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.58  E-value=0.0046  Score=37.74  Aligned_cols=21  Identities=29%  Similarity=0.215  Sum_probs=16.9

Q ss_pred             ccceeeeeecccCCCceeEee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFK   52 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~   52 (80)
                      -.|.=+.|.|++|+||||+.-
T Consensus        13 ~~g~gvli~G~sg~GKS~la~   33 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETAL   33 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHHH
Confidence            345667799999999998763

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.58  E-value=0.0022  Score=42.92  Aligned_cols=32  Identities=25%  Similarity=0.189  Sum_probs=23.4

Q ss_pred             eeeeecccCCCceeEeeeeeceeecCCCceee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV   67 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~~G~i~~   67 (80)
                      .++|=|+-|+||||+++.|.-.+......+.+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~   38 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL   38 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence            47889999999999999987655433223433

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.002  Score=40.38  Aligned_cols=21  Identities=38%  Similarity=0.469  Sum_probs=17.1

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      ++.|.|.=|||||||++-+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHh
Confidence            467889999999999876644

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.0017  Score=43.34  Aligned_cols=19  Identities=26%  Similarity=0.438  Sum_probs=15.8

Q ss_pred             eeeeecccCCCceeEeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l   54 (80)
                      .+.|+|++|||||++++.+
T Consensus        52 H~~I~G~tGsGKT~~l~~l   70 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLREL   70 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHH
Confidence            4789999999999987543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.37  E-value=0.0018  Score=40.11  Aligned_cols=20  Identities=40%  Similarity=0.416  Sum_probs=17.8

Q ss_pred             eeeeecccCCCceeEeeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~   55 (80)
                      .++++|.-++|||||+..|.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            47899999999999998874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.31  E-value=0.0025  Score=40.99  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=19.6

Q ss_pred             cceeeeeecccCCCceeEeeeee
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      +..+++|.|.-|.|||||.+.+.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999998764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.21  E-value=0.0027  Score=41.66  Aligned_cols=30  Identities=30%  Similarity=0.407  Sum_probs=25.2

Q ss_pred             eeeeeccceeeeeecccCCCceeEeeeeec
Q psy7220          27 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        27 isl~i~~g~~~~iiG~nGsGKsTll~~l~g   56 (80)
                      .=+.+-+|+..+|.|+.|+|||+|+..++.
T Consensus        61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            345788999999999999999999766643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.17  E-value=0.0027  Score=41.47  Aligned_cols=20  Identities=35%  Similarity=0.393  Sum_probs=17.8

Q ss_pred             eeeeeecccCCCceeEeeee
Q psy7220          35 ECFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l   54 (80)
                      -.++|+|+.|+|||||...|
T Consensus         7 Rni~i~gh~~~GKTtL~e~l   26 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERI   26 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHH
Confidence            35899999999999999877

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.99  E-value=0.0035  Score=41.90  Aligned_cols=26  Identities=31%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             eeeeecccCCCceeEeeeeeceeecC
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAIKPT   61 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~~~~   61 (80)
                      .+.|=|+-|+||||+++.|...+...
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~   33 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGG   33 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccC
Confidence            46788999999999999998765543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.98  E-value=0.0061  Score=34.58  Aligned_cols=19  Identities=26%  Similarity=0.267  Sum_probs=14.9

Q ss_pred             cceeeeeecccCCCceeEe
Q psy7220          33 RGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll   51 (80)
                      ..+...|.+|.|||||+.+
T Consensus         7 ~~~~~ll~apTGsGKT~~~   25 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKV   25 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHH
T ss_pred             CCCEEEEEeCCCCCHHHHH
Confidence            3455667999999999865

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=93.94  E-value=0.008  Score=37.84  Aligned_cols=19  Identities=26%  Similarity=0.106  Sum_probs=16.9

Q ss_pred             eccceeeeeecccCCCcee
Q psy7220          31 VGRGECFGLLGLNGAGKTT   49 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsT   49 (80)
                      +.+|+.+.+.+|+|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            4688889999999999996

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.92  E-value=0.0023  Score=39.89  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=18.8

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +.|.||+|+|||-|+++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6799999999999998887543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.0025  Score=39.90  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=18.3

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +-|.||+|+||||+.++++..+
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            5678999999999999876544

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=93.75  E-value=0.0041  Score=40.64  Aligned_cols=29  Identities=28%  Similarity=0.273  Sum_probs=24.2

Q ss_pred             eeeeeccceeeeeecccCCCceeEeeeee
Q psy7220          27 ISFGVGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        27 isl~i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .=+.+-+|+..+|+|+.|+|||+|+..+.
T Consensus        60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          60 AMIPVGRGQRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             TTSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred             ccccccCCceEeeccCCCCChHHHHHHHH
Confidence            34577899999999999999999886543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.73  E-value=0.0034  Score=41.37  Aligned_cols=23  Identities=39%  Similarity=0.579  Sum_probs=19.9

Q ss_pred             eeeeecccCCCceeEeeeeecee
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+.++||+|+|||.+.+.|+..+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            56689999999999999888754

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.007  Score=40.35  Aligned_cols=21  Identities=38%  Similarity=0.621  Sum_probs=17.9

Q ss_pred             ccceeeeeecccCCCceeEee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFK   52 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~   52 (80)
                      +.|++..+.|.||+|||||-.
T Consensus        12 ~~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            468888899999999999753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.0033  Score=38.81  Aligned_cols=22  Identities=18%  Similarity=0.274  Sum_probs=19.0

Q ss_pred             eeeecccCCCceeEeeeeecee
Q psy7220          37 FGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +-+.||.|+||||+.+.++..+
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHhc
Confidence            6789999999999999887644

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=93.37  E-value=0.0076  Score=40.23  Aligned_cols=20  Identities=40%  Similarity=0.627  Sum_probs=17.3

Q ss_pred             cceeeeeecccCCCceeEee
Q psy7220          33 RGECFGLLGLNGAGKTTTFK   52 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~   52 (80)
                      .|++..+.|.||+|||||-.
T Consensus        13 ~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHTC
T ss_pred             CCCEEEEEccCCCCcccccc
Confidence            57888899999999999753

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.17  E-value=0.0049  Score=37.65  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=20.7

Q ss_pred             cceeeeeecccCCCceeEeeeeece
Q psy7220          33 RGECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      |.=.++|+|.-.+|||||+..|.+.
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~   31 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGI   31 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhh
Confidence            3335899999999999999998764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.97  E-value=0.0049  Score=41.18  Aligned_cols=24  Identities=33%  Similarity=0.272  Sum_probs=19.5

Q ss_pred             eeeeeecccCCCceeEeeeeecee
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      -.++|=|+-|+||||+++.|....
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC--
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHh
Confidence            347889999999999999997654

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.67  E-value=0.011  Score=39.53  Aligned_cols=20  Identities=40%  Similarity=0.627  Sum_probs=17.5

Q ss_pred             ccceeeeeecccCCCceeEe
Q psy7220          32 GRGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll   51 (80)
                      +.|++..+.|.||+|||||-
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46788889999999999986

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.28  E-value=0.0097  Score=38.98  Aligned_cols=29  Identities=24%  Similarity=0.235  Sum_probs=24.2

Q ss_pred             eeeeeeccceeeeeecccCCCceeEeeee
Q psy7220          26 QISFGVGRGECFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        26 ~isl~i~~g~~~~iiG~nGsGKsTll~~l   54 (80)
                      |.=+.+-+|+..+|.|+.|+|||+++.-+
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~   88 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDT   88 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHH
Confidence            34467889999999999999999987533

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.16  E-value=0.01  Score=37.74  Aligned_cols=16  Identities=25%  Similarity=0.370  Sum_probs=13.3

Q ss_pred             eeeeecccCCCceeEe
Q psy7220          36 CFGLLGLNGAGKTTTF   51 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll   51 (80)
                      .+.|.|+-||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4668899999999765

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.15  E-value=0.0066  Score=37.75  Aligned_cols=19  Identities=26%  Similarity=0.281  Sum_probs=16.9

Q ss_pred             eeeeecccCCCceeEeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l   54 (80)
                      .++++|.-++|||||+..|
T Consensus         5 Ni~viGHVd~GKTTL~~~L   23 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRL   23 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHH
Confidence            3789999999999998766

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.0084  Score=38.90  Aligned_cols=23  Identities=30%  Similarity=0.231  Sum_probs=19.1

Q ss_pred             eeeeeecccCCCceeEeeeeece
Q psy7220          35 ECFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        35 ~~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .-+.|+|+.|+|||+++.-++..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            34679999999999999877754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.79  E-value=0.011  Score=37.10  Aligned_cols=15  Identities=33%  Similarity=0.383  Sum_probs=12.8

Q ss_pred             eeeecccCCCceeEe
Q psy7220          37 FGLLGLNGAGKTTTF   51 (80)
Q Consensus        37 ~~iiG~nGsGKsTll   51 (80)
                      +.|+|+-||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            568999999999764

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.79  E-value=0.02  Score=35.30  Aligned_cols=20  Identities=35%  Similarity=0.330  Sum_probs=16.8

Q ss_pred             ccceeeeeecccCCCceeEe
Q psy7220          32 GRGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll   51 (80)
                      -.|+-+.++.|+|+|||+..
T Consensus        56 l~g~~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFG   75 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHH
T ss_pred             HCCCCEEEEecCCChHHHHH
Confidence            36888889999999999754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.61  E-value=0.0074  Score=38.97  Aligned_cols=29  Identities=21%  Similarity=0.350  Sum_probs=25.4

Q ss_pred             eeccceeeeeecccCCCceeEeeeeecee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..++.-++.|.||-++|||+|+.+|..++
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45777888999999999999999998876

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.27  E-value=0.01  Score=36.91  Aligned_cols=25  Identities=32%  Similarity=0.327  Sum_probs=20.0

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ..-+.|+|+.|.|||++..-|+..+
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHH
Confidence            3356799999999999998777543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=90.71  E-value=0.012  Score=36.21  Aligned_cols=22  Identities=32%  Similarity=0.332  Sum_probs=19.1

Q ss_pred             eeeeecccCCCceeEeeeeece
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTGA   57 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~gl   57 (80)
                      .++++|.-.+|||||+..|.+.
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            3789999999999999988653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=89.99  E-value=0.015  Score=36.45  Aligned_cols=19  Identities=32%  Similarity=0.254  Sum_probs=17.1

Q ss_pred             eeeecccCCCceeEeeeee
Q psy7220          37 FGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l~   55 (80)
                      ++++|.-.+|||||+..|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            6889999999999998883

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.75  E-value=0.0097  Score=37.49  Aligned_cols=29  Identities=21%  Similarity=0.279  Sum_probs=25.8

Q ss_pred             eeccceeeeeecccCCCceeEeeeeecee
Q psy7220          30 GVGRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        30 ~i~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+++..++.|.||..+|||+|...|..++
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            46888999999999999999998888775

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=89.68  E-value=0.021  Score=41.16  Aligned_cols=27  Identities=30%  Similarity=0.452  Sum_probs=22.6

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+.+.+.|.|.+|||||+-.|.+...+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467889999999999999888776654

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.53  E-value=0.015  Score=42.22  Aligned_cols=27  Identities=26%  Similarity=0.354  Sum_probs=22.8

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+.+.+.|.|++|||||.-.|.+...+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            467899999999999999888876654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.01  E-value=0.016  Score=38.71  Aligned_cols=18  Identities=22%  Similarity=0.292  Sum_probs=17.0

Q ss_pred             eeeecccCCCceeEeeee
Q psy7220          37 FGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l   54 (80)
                      ++|+|+-++|||||+..|
T Consensus        20 I~iiGhvd~GKTTL~d~L   37 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSL   37 (341)
T ss_dssp             EEEECCGGGTHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHH
Confidence            899999999999999877

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=88.64  E-value=0.026  Score=35.95  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=21.9

Q ss_pred             ceeeeeecccCCCceeEeeeeeceee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~~   59 (80)
                      +-.++|+|..-+|||||++.|.|-..
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             ceEEEEEecCccchhhhhhhhhccce
Confidence            44588999999999999999988543

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=88.58  E-value=0.028  Score=40.62  Aligned_cols=27  Identities=26%  Similarity=0.272  Sum_probs=22.4

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ++.+.+.|.|.+|||||+-.|.+...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457889999999999999888776554

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.55  E-value=0.017  Score=36.54  Aligned_cols=18  Identities=28%  Similarity=0.266  Sum_probs=16.6

Q ss_pred             eeeecccCCCceeEeeee
Q psy7220          37 FGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        37 ~~iiG~nGsGKsTll~~l   54 (80)
                      ++++|.-.+|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            789999999999998777

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.26  E-value=0.023  Score=35.83  Aligned_cols=19  Identities=32%  Similarity=0.335  Sum_probs=16.7

Q ss_pred             eeeeecccCCCceeEeeee
Q psy7220          36 CFGLLGLNGAGKTTTFKML   54 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l   54 (80)
                      -++++|.-.+|||||...|
T Consensus         8 Ni~iiGHvD~GKsTl~~~l   26 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHL   26 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHH
Confidence            4789999999999998666

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.08  E-value=0.041  Score=36.64  Aligned_cols=19  Identities=37%  Similarity=0.328  Sum_probs=16.3

Q ss_pred             cceeeeeecccCCCceeEe
Q psy7220          33 RGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll   51 (80)
                      .+.++.|.|+-|+||||++
T Consensus       162 ~~~~~vI~G~pGTGKTt~i  180 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTV  180 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHH
T ss_pred             cCCeEEEEcCCCCCceehH
Confidence            3568889999999999876

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.77  E-value=0.022  Score=38.53  Aligned_cols=21  Identities=33%  Similarity=0.338  Sum_probs=16.9

Q ss_pred             eeeeecccCCCceeEeeeeec
Q psy7220          36 CFGLLGLNGAGKTTTFKMLTG   56 (80)
Q Consensus        36 ~~~iiG~nGsGKsTll~~l~g   56 (80)
                      -..|||+.|.|||+++.-|+.
T Consensus        45 n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHH
Confidence            356899999999999865553

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.73  E-value=0.035  Score=40.66  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=21.9

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ...+.+.|.|.+|||||.-.+.+...+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            456788899999999998877666554

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.70  E-value=0.021  Score=34.36  Aligned_cols=18  Identities=33%  Similarity=0.252  Sum_probs=15.0

Q ss_pred             cceeeeeecccCCCceeE
Q psy7220          33 RGECFGLLGLNGAGKTTT   50 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTl   50 (80)
                      +|.-+.+..|+|||||+.
T Consensus        39 ~~~~~il~apTGsGKT~~   56 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLL   56 (202)
T ss_dssp             TCSCEEEECSSHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHH
Confidence            566677899999999975

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=87.34  E-value=0.025  Score=41.45  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=21.5

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      .+.+.+.|.|.+|||||.-.+.+...+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457889999999999998866665544

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.91  E-value=0.033  Score=35.15  Aligned_cols=25  Identities=16%  Similarity=0.182  Sum_probs=20.7

Q ss_pred             eccceeeeeecccCCCceeEeeeee
Q psy7220          31 VGRGECFGLLGLNGAGKTTTFKMLT   55 (80)
Q Consensus        31 i~~g~~~~iiG~nGsGKsTll~~l~   55 (80)
                      .....-+.|.|+.|+||+++.+.|.
T Consensus        20 a~~~~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          20 SCAECPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             TTCCSCEEEECSTTSSHHHHHHHHH
T ss_pred             hCCCCCEEEECCCCcCHHHHHHHHH
Confidence            3456668899999999999998884

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=85.89  E-value=0.034  Score=40.24  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=22.6

Q ss_pred             ccceeeeeecccCCCceeEeeeeecee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      ...+.+.|.|++|||||.-.+.+...+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            567888899999999999888776654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.06  E-value=0.053  Score=31.38  Aligned_cols=28  Identities=11%  Similarity=-0.063  Sum_probs=21.6

Q ss_pred             ccceeeeeecccCCCceeEeeeee-ceee
Q psy7220          32 GRGECFGLLGLNGAGKTTTFKMLT-GAIK   59 (80)
Q Consensus        32 ~~g~~~~iiG~nGsGKsTll~~l~-gl~~   59 (80)
                      +.|=.+.+.|-+||||||+.++|. .+.+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            356667789999999999998884 4443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.93  E-value=0.044  Score=33.49  Aligned_cols=25  Identities=12%  Similarity=-0.057  Sum_probs=20.1

Q ss_pred             ceeeeeecccCCCceeEeeeeecee
Q psy7220          34 GECFGLLGLNGAGKTTTFKMLTGAI   58 (80)
Q Consensus        34 g~~~~iiG~nGsGKsTll~~l~gl~   58 (80)
                      +-.+-+.||+|+||||+.+.++..+
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3456689999999999998877654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=83.27  E-value=0.12  Score=30.37  Aligned_cols=25  Identities=28%  Similarity=0.259  Sum_probs=19.1

Q ss_pred             eeeeeeccc-CCCceeEeeeeeceee
Q psy7220          35 ECFGLLGLN-GAGKTTTFKMLTGAIK   59 (80)
Q Consensus        35 ~~~~iiG~n-GsGKsTll~~l~gl~~   59 (80)
                      ..+-|.|-+ |+||||+.-.|+..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            356688996 9999998877766554

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.63  E-value=0.24  Score=28.38  Aligned_cols=19  Identities=37%  Similarity=0.466  Sum_probs=16.6

Q ss_pred             cceeeeeecccCCCceeEe
Q psy7220          33 RGECFGLLGLNGAGKTTTF   51 (80)
Q Consensus        33 ~g~~~~iiG~nGsGKsTll   51 (80)
                      +|.+..|+||=-|||||-|
T Consensus         1 ~G~L~li~GpMfsGKTt~L   19 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTEL   19 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHH
T ss_pred             CcEEEEEEecccCHHHHHH
Confidence            4788899999999999964

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.48  E-value=0.18  Score=30.12  Aligned_cols=26  Identities=35%  Similarity=0.518  Sum_probs=19.6

Q ss_pred             ceeeeee-cccCCCceeEeeeeeceee
Q psy7220          34 GECFGLL-GLNGAGKTTTFKMLTGAIK   59 (80)
Q Consensus        34 g~~~~ii-G~nGsGKsTll~~l~gl~~   59 (80)
                      |.++++. +.-|+||||+.-.|+..+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la   28 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALG   28 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            4678887 6678999999877765554