Psyllid ID: psy7343
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | 2.2.26 [Sep-21-2011] | |||||||
| Q6P1R4 | 473 | tRNA-dihydrouridine(16/17 | yes | N/A | 0.669 | 0.689 | 0.524 | 1e-100 | |
| Q8C2P3 | 475 | tRNA-dihydrouridine(16/17 | yes | N/A | 0.665 | 0.682 | 0.527 | 1e-100 | |
| Q8K582 | 438 | tRNA-dihydrouridine(16/17 | yes | N/A | 0.665 | 0.739 | 0.521 | 2e-98 | |
| Q9HGN6 | 399 | tRNA-dihydrouridine(16/17 | yes | N/A | 0.698 | 0.852 | 0.388 | 9e-75 | |
| P53759 | 423 | tRNA-dihydrouridine(16/17 | yes | N/A | 0.685 | 0.789 | 0.389 | 5e-69 | |
| O95620 | 317 | tRNA-dihydrouridine(20a/2 | no | N/A | 0.482 | 0.741 | 0.385 | 6e-42 | |
| Q32M08 | 324 | tRNA-dihydrouridine(20a/2 | no | N/A | 0.540 | 0.811 | 0.356 | 7e-42 | |
| Q06063 | 367 | tRNA-dihydrouridine(20a/2 | no | N/A | 0.632 | 0.839 | 0.321 | 3e-36 | |
| Q09504 | 284 | Uncharacterized tRNA-dihy | no | N/A | 0.482 | 0.827 | 0.365 | 6e-35 | |
| O74553 | 326 | tRNA-dihydrouridine(20a/2 | no | N/A | 0.548 | 0.819 | 0.334 | 3e-34 |
| >sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/345 (52%), Positives = 234/345 (67%), Gaps = 19/345 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V ++P L Y R H+F + HH TL + ++R + K ++ + L+ R
Sbjct: 254 EEYLDIVREHPCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLR 311
Query: 444 F---IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPY+RP P +
Sbjct: 312 CQEEISRQEGAK--PTGDLPFH----------WICQPYIRPGPRE 344
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: - |
| >sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 235/349 (67%), Gaps = 25/349 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVG--KTNHIKDLRKA 436
EYLD+V Q+P L Y R H+F + HH L + E + V+ L G + LR
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGVAAVSQALKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
DM R++ EG + P N P WICQPY+RP P +
Sbjct: 314 EDMSRQQ-----EGVR--PADNLPAFH---------WICQPYIRPGPRE 346
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 182/349 (52%), Positives = 235/349 (67%), Gaps = 25/349 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNI+CL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVG--KTNHIKDLRKA 436
EYLD+V Q+P L Y R H+F + HH L + E + V+ L G + LR
Sbjct: 254 DEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGVAAVSQALKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
DM R++ EG + P N P WICQPY+RP P++
Sbjct: 314 EDMARQQ-----EGVR--PADNLPAFH---------WICQPYIRPGPKE 346
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 226/363 (62%), Gaps = 23/363 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL-- 197
R + ++G P+ ILAPMVD SELPWR+L+RR G+ LCY+PM + F + R ++
Sbjct: 9 RDFYNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFST 68
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
+ PE+RPLIIQFCGND + + +AAK+A P+CD +D+N+GCPQ +AK+G YG++LQ++W
Sbjct: 69 RTIPEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWN 128
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ ++++ L + +PV+ KIRI+ D KT++YA+M+ +AG +LAVHGR +Q+G TG
Sbjct: 129 LIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTG 188
Query: 318 LASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
+A WE I +RK L + ANGNI D++ C+ TGV GV++AEG+LYNP +F
Sbjct: 189 IADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLPP 248
Query: 376 TRPAW-------ELASEYLDLVAQYPVRLQYA-----RGHVFNMCHHLLTLPENSDVRLL 423
+ P ++ EYL+++ ++ + Y+ +GH+F + LL++ ++D+R
Sbjct: 249 SSPLMTLYPRIDDMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSI--HTDIRSK 306
Query: 424 VGKTNHIKDLRK---AVDMLRERFIDYHEGRKLWPPPNYPMS--SNHHNLSLPPWICQPY 478
+ + +D V MLR+R ++ E ++ + S + +P W QPY
Sbjct: 307 LAQGCTPRDFETFPPVVAMLRKRLLECEEKGEINEDKDVKESVKDSMGYPVIPWWRVQPY 366
Query: 479 VRP 481
+RP
Sbjct: 367 IRP 369
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/372 (38%), Positives = 210/372 (56%), Gaps = 38/372 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---I 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 80 LDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ NL+++L + ++VPV+ KIRI+ D K++ YA+M+ AG Q L VHGR +Q+G T
Sbjct: 140 DLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKT 199
Query: 317 GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT- 373
GLA+WE I +R L + ANGNI D+ C+ G VM+AEGNLYNP +F
Sbjct: 200 GLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNV 259
Query: 374 GQTRPAW-------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT-----LPENSDVR 421
GQT+ ++ EY +V + Q ++ M H LP ++D+R
Sbjct: 260 GQTKNKEKIFPRVDKIIREYFQIVKE----CQESKASKTAMKSHFFKILRPFLPHHTDIR 315
Query: 422 LLVGKTNH-----------IKDLRKAVDMLRER-FIDYHEGRKLWPPPNYPMSSNHHNLS 469
+ N +K + K V + E+ I + + ++ S +
Sbjct: 316 STLATMNAKATWEEWEEQVVKPVEKVVQEIFEQPDIAIKDEITIGEKQSWGGSYR----T 371
Query: 470 LPPWICQPYVRP 481
+P W CQPY RP
Sbjct: 372 VPYWRCQPYFRP 383
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U16 and U17 in cytoplasmic tRNAs. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 139/241 (57%), Gaps = 6/241 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ + E G + VHGRT ++R ++ I ++
Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPV---HYDSIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 L 389
+
Sbjct: 267 I 267
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus4l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 146/269 (54%), Gaps = 6/269 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA L P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRNRVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ R E G + VHGRTV++R ++ I ++
Sbjct: 150 SPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQPV---HYDAIKMIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IP++ANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
+ + H+ M + + E
Sbjct: 267 ISLELGTPFMCFHQHLMYMMEKITSRQEK 295
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 160/320 (50%), Gaps = 12/320 (3%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T E PL I +T G P I PMV S+LP+R L R Y + Y+PM+ A +++ +
Sbjct: 20 TEETDPLHIIKTRQKTHGRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRN 79
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ R L + ED PLI+Q N+ +L + ++ P+CDGI IN GCP R G
Sbjct: 80 EHARISDLSTNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIG 139
Query: 250 AYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
L + LL ++V +++ ++ + KIRI++ +++TVE R L AG + +HGR
Sbjct: 140 CALIYNSDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGR 199
Query: 308 TVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R L + ++I +PVIANG+ L+D+E TG GVM G L
Sbjct: 200 TRRTRSSQPANLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLL 259
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMC-HHLLTLPENSDVRL-LV 424
NPALF G T W ++ ++ G F + HHL + EN +++ L+
Sbjct: 260 SNPALFAGYTTCPWGCIEKFCYWALEFG-------GLPFQLAQHHLYCMLENMELKKSLL 312
Query: 425 GKTNHIKDLRKAVDMLRERF 444
K ++K+ +D + F
Sbjct: 313 KKMMNLKNYISLIDWFNKTF 332
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U20a and U20b in cytoplasmic tRNAs. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 9 EC: 0 |
| >sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 125/241 (51%), Gaps = 6/241 (2%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS 215
MV S+L +R L R Y +C+TPM+ A FI +K R L D PLI+QF +D
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDP 60
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP-- 273
L+EAA++ G+D+N GCP+ + +G+ L LL ++V R + P
Sbjct: 61 FVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120
Query: 274 -VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332
VS KIRI D+ KTV+ R E AG L VHGRT QR + + + V+ +++
Sbjct: 121 SVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEPIDIQA---LRIVKDSVS 177
Query: 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQ 392
+P+IANG I + QTGV G+M A G L NPALF G + ++ L +
Sbjct: 178 VPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTPSDCVENFMRLSRE 237
Query: 393 Y 393
Y
Sbjct: 238 Y 238
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 142/278 (51%), Gaps = 11/278 (3%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P I APMV S+LP+R L R Y + + YTPM+ A +F+ K R + D LI+
Sbjct: 20 PVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKG-RYFDFSTNDADASLIL 78
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF +D L +AA+L P+ DGI IN GCPQ A + G+ L D+ + LV +++
Sbjct: 79 QFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVKS 138
Query: 269 AV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
+ KIRI +D+NKT +++E++G ++ VHGRT R ++ + + I
Sbjct: 139 TLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDR--SSFPVNLDAIRE 196
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
VR + IPV+ANG+++ L T G+M+A G L NPALF G W +
Sbjct: 197 VRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPWGCVERF 256
Query: 387 LDLVAQYPVRLQYARGHVFNMCHHL------LTLPENS 418
L Y + H+ M + +T+P++S
Sbjct: 257 LWYSTSYSLNFHLFYHHLTTMMGQMTTKRERMTIPKDS 294
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 9 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| 242003652 | 540 | tRNA-dihydrouridine synthase, putative [ | 0.689 | 0.622 | 0.571 | 1e-122 | |
| 383855157 | 478 | PREDICTED: tRNA-dihydrouridine(16/17) sy | 0.728 | 0.742 | 0.561 | 1e-119 | |
| 328789228 | 478 | PREDICTED: tRNA-dihydrouridine synthase | 0.687 | 0.700 | 0.582 | 1e-117 | |
| 380019158 | 477 | PREDICTED: tRNA-dihydrouridine(16/17) sy | 0.687 | 0.702 | 0.582 | 1e-117 | |
| 340716031 | 479 | PREDICTED: tRNA-dihydrouridine synthase | 0.689 | 0.701 | 0.583 | 1e-117 | |
| 350396718 | 492 | PREDICTED: tRNA-dihydrouridine synthase | 0.689 | 0.682 | 0.583 | 1e-116 | |
| 322780739 | 1167 | hypothetical protein SINV_07882 [Solenop | 0.739 | 0.308 | 0.549 | 1e-115 | |
| 91092412 | 461 | PREDICTED: similar to t-diRNAhydrouridin | 0.691 | 0.731 | 0.564 | 1e-115 | |
| 307182359 | 468 | tRNA-dihydrouridine synthase 1-like [Cam | 0.698 | 0.726 | 0.559 | 1e-114 | |
| 170034571 | 609 | t-diRNAhydrouridine synthase [Culex quin | 0.749 | 0.599 | 0.497 | 1e-110 |
| >gi|242003652|ref|XP_002422814.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis] gi|212505672|gb|EEB10076.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 195/341 (57%), Positives = 266/341 (78%), Gaps = 5/341 (1%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+LGSPRF++APMVDASEL WRLLSRR+G+ LCYTPM + F +++ R+E L S PEDR
Sbjct: 8 KLGSPRFVVAPMVDASELAWRLLSRRHGAQLCYTPMFHSLIFANNERYRKEGLASVPEDR 67
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PLI+QFCGN+ ++ +AA+LAEP+CD +DIN+GCPQ +AKRGHYGA+LQDDWPLL +V
Sbjct: 68 PLIVQFCGNEPDSILKAAQLAEPYCDAVDINLGCPQAIAKRGHYGAFLQDDWPLLKEIVG 127
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+L++++++PV+CKIR+++DV KTV+YA+MLE AGCQLL VHGRT +Q+G TGLA+WEHI
Sbjct: 128 TLKKSLKIPVTCKIRVFEDVKKTVKYAKMLEEAGCQLLTVHGRTKEQKGPLTGLANWEHI 187
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELAS 384
AVR+ + IPV+ANGNIQC+ D+ CL T GVM+AEGNLYNPA+F G+ P+WE+A+
Sbjct: 188 KAVRENVRIPVLANGNIQCVQDIFRCLEVTKCNGVMSAEGNLYNPAIFEGRYPPSWEMAT 247
Query: 385 EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
EYLDLV +YP L Y RGH+F + HH+L P+N DVR + + ++D R ++RER+
Sbjct: 248 EYLDLVEKYPCPLSYIRGHLFKIFHHILCEPDNKDVRAELANKSTLEDFRNVTKIIRERY 307
Query: 445 IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+HEG +W +S+ ++L LPPW+C+PY RP+PE+
Sbjct: 308 EPFHEGLDVW-----KRNSDSYDLVLPPWLCKPYERPSPEE 343
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383855157|ref|XP_003703084.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/363 (56%), Positives = 263/363 (72%), Gaps = 8/363 (2%)
Query: 127 LMSTPEDRPL---IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSA 183
+ + P D+P + ++ LGSPR+I+APMVDASEL WRLLSRR+G+HLCYTPM+ +
Sbjct: 4 VAAKPSDQPANSGVEAGNVWEELGSPRYIVAPMVDASELAWRLLSRRHGAHLCYTPMLHS 63
Query: 184 HQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVA 243
F D K R+E L ST EDRPLI+QFCGND + EAA LAEP+CD +DINIGCPQ +A
Sbjct: 64 SVFCRDPKYRREALASTAEDRPLIVQFCGNDPNTILEAALLAEPYCDAVDINIGCPQAIA 123
Query: 244 KRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303
KRG YGA+LQDDW LL +VS+L + + +PV+CK+R++ +++KTVEYARMLE AG +LL
Sbjct: 124 KRGRYGAFLQDDWDLLRRIVSTLSKGLHIPVTCKLRVFAEIDKTVEYARMLESAGARLLT 183
Query: 304 VHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363
VHGRT +Q+G TG+ASWEHI AVR+A+TIPV ANGNIQCL DVE CL +TGV GVM+AE
Sbjct: 184 VHGRTREQKGPQTGMASWEHIKAVRQAVTIPVFANGNIQCLQDVEKCLEETGVHGVMSAE 243
Query: 364 GNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
GNLYNP +F + P+WE A EYLDLV +YP Y RGH+F + H L L EN + R
Sbjct: 244 GNLYNPFIFEARYPPSWEPALEYLDLVERYPAPPSYVRGHLFKLFQHTLCLAENKEEREN 303
Query: 424 VGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTP 483
+ + + ++ + V LR R++ YHEGR W + +NL LPPW+CQPYVR P
Sbjct: 304 LARNSTMESFKSVVYALRNRYLPYHEGRLTWQE-----ETPEYNLKLPPWLCQPYVRHPP 358
Query: 484 EQQ 486
E++
Sbjct: 359 EER 361
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: |
| >gi|328789228|ref|XP_623799.3| PREDICTED: tRNA-dihydrouridine synthase 1-like isoform 2 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/340 (58%), Positives = 254/340 (74%), Gaps = 5/340 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSP +I+APMVDASEL WRLLSRR+G+HLCYTPM+ + F D K R+E L ST EDRP
Sbjct: 27 LGSPEYIVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDPKYRREALASTAEDRP 86
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L++QFCGND L EAA LAEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL +VS+
Sbjct: 87 LVVQFCGNDPSTLLEAALLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWNLLQQIVST 146
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + VPV+CK+R++ +++KTV+YA+MLE AG QLL VHGRT +Q+G TG+ASW+HI
Sbjct: 147 LSKKLHVPVTCKLRVFAEIDKTVKYAQMLEAAGAQLLTVHGRTREQKGPLTGVASWDHIK 206
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+A+TIPV ANGNIQCL D++ C+ +TGV GVM+AEGNLYNP +F P+WE A E
Sbjct: 207 AVRQAVTIPVFANGNIQCLQDIQKCIEETGVNGVMSAEGNLYNPYIFEACYPPSWEPALE 266
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YLDLV YP Y RGH+F + H L L EN + R + + + ++ R V LR+R++
Sbjct: 267 YLDLVECYPAPASYIRGHLFKLFQHTLCLAENKEERENLARNSTMESFRNVVYTLRDRYL 326
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
YHEGR +W ++ +NL LPPW+CQPYVR PE+
Sbjct: 327 PYHEGRLIWHE-----ETSDYNLKLPPWLCQPYVRHLPEE 361
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380019158|ref|XP_003693481.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/340 (58%), Positives = 255/340 (75%), Gaps = 5/340 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSP++I+APMVDASEL WRLLSRR+G+HLCYTPM+ + F D K R+E L ST EDRP
Sbjct: 26 LGSPQYIVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDPKYRREALASTAEDRP 85
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L++QFCGND L EAA LAEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL +VS+
Sbjct: 86 LVVQFCGNDPSTLLEAALLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQQIVST 145
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + VPV+CK+R++ ++NKTV+YA+MLE AG QLL VHGRT +Q+G TG+ASW+HI
Sbjct: 146 LSKKLHVPVTCKLRVFAEINKTVKYAQMLEAAGAQLLTVHGRTREQKGPLTGVASWDHIK 205
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+A+TIPV ANGNIQCL DV+ C+ +TGV GVM+AEGNLYNP +F P+WE A E
Sbjct: 206 AVRQAVTIPVFANGNIQCLQDVQKCIEETGVNGVMSAEGNLYNPYIFEACYPPSWEPALE 265
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+L+ YP Y RGH+F + H L L EN + R + + + ++ R V LR+R++
Sbjct: 266 YLNLIECYPAPASYIRGHLFKLFQHTLCLAENKEERENLARNSTMESFRNVVYALRDRYL 325
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
YHEGR +W ++ +NL LPPW+CQPYVR PE+
Sbjct: 326 PYHEGRLIWHE-----ETSDYNLKLPPWLCQPYVRHLPEK 360
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: |
| >gi|340716031|ref|XP_003396507.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/341 (58%), Positives = 257/341 (75%), Gaps = 5/341 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SPR+++APMVDASEL WRLLSRR+G+HLCYTPM+ + F D K R+E L ST EDRP
Sbjct: 28 LSSPRYVVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDPKYRREALTSTAEDRP 87
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFCGND L EAA LAEP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +VS+
Sbjct: 88 LIVQFCGNDPNTLLEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRIVST 147
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L ++++VPV+CK+R++ +++KTV+YA+MLE AG +LL VHGRT +Q+G TG+ASW+HI
Sbjct: 148 LSKSLRVPVTCKLRVFAEIDKTVKYAQMLETAGARLLTVHGRTREQKGPLTGIASWDHIK 207
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+A+TIPV ANGNIQCL D+E C+ +TGV GVM+AEGNLYNP +F + P+WE A E
Sbjct: 208 AVRQAVTIPVFANGNIQCLQDIERCIEETGVHGVMSAEGNLYNPYIFEARYPPSWEPALE 267
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YLDLV +YP Y RGH+F + H L L EN + R + + + ++ R V LR+R++
Sbjct: 268 YLDLVERYPAPPSYIRGHLFKLFQHTLCLAENKEERENLARNSTMESFRNVVYALRDRYL 327
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQ 486
YHEGR +W MS HNL LPPW+CQPY+R PE+
Sbjct: 328 PYHEGRLIW---QEEMSD--HNLKLPPWLCQPYIRHLPEEN 363
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350396718|ref|XP_003484639.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/341 (58%), Positives = 256/341 (75%), Gaps = 5/341 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SPR+++APMVDASEL WRLLSRR+G+HLCYTPM+ + F D K R+E L ST EDRP
Sbjct: 41 LSSPRYVVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDPKYRREALTSTVEDRP 100
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFCGND L EAA LAEP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +VS+
Sbjct: 101 LIVQFCGNDPNTLLEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRIVST 160
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L ++++VPV+CK+R++ +++KTV+YA+MLE AG +LL VHGRT +Q+G TG+ASW+HI
Sbjct: 161 LSKSLRVPVTCKLRVFAEIDKTVKYAQMLETAGARLLTVHGRTREQKGPLTGIASWDHIK 220
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+A+TIPV ANGNIQCL D+E C+ +TGV GVM+AEGNLYNP +F P+WE A E
Sbjct: 221 AVRQAVTIPVFANGNIQCLQDIERCIEETGVHGVMSAEGNLYNPYIFEACYPPSWEPALE 280
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YLDLV +YP Y RGH+F + H L L EN + R + + + ++ R V LR+R++
Sbjct: 281 YLDLVERYPAPPSYIRGHLFKLFQHTLCLAENKEERENLARNSTMESFRNVVYALRDRYL 340
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQ 486
YHEGR +W MS HNL LPPW+CQPY+R PE+
Sbjct: 341 PYHEGRLIW---QEEMSD--HNLKLPPWLCQPYIRHLPEEN 376
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322780739|gb|EFZ09996.1| hypothetical protein SINV_07882 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/366 (54%), Positives = 260/366 (71%), Gaps = 6/366 (1%)
Query: 121 KLRQEILMSTPEDRPLIIQRT-IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTP 179
K+ EI S+ ++ +RT ++ LGSPR+I+APMVDASEL WRLLSRR+G+ LCYTP
Sbjct: 696 KIMSEIAESSDKEAVASKKRTNVWEDLGSPRYIVAPMVDASELAWRLLSRRHGAQLCYTP 755
Query: 180 MVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
M+ + F D K R+E L ST EDRPLI+QFCGND L EAA LAEP+CD IDINIGCP
Sbjct: 756 MLHSSVFCRDPKYRREALASTSEDRPLIVQFCGNDPDILLEAAHLAEPYCDAIDINIGCP 815
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
Q +AKRGHYGA+LQDDW LL +VS+L+ +++PV+CK+R++ ++ +TVEYA MLE AG
Sbjct: 816 QAIAKRGHYGAFLQDDWDLLKKIVSTLKNGLRIPVTCKLRVFSEIERTVEYACMLEDAGA 875
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359
LL VHGRT +Q+G TGLASW+HI AVR A+ IPVIANGNIQC+ D+E C+ + V GV
Sbjct: 876 SLLTVHGRTREQKGPLTGLASWKHIKAVRDAVKIPVIANGNIQCVQDLERCIEEIQVHGV 935
Query: 360 MTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSD 419
M+AEGNLYNP +F WE A EYL+LV QYPV Y RGH+F + HH+L L EN +
Sbjct: 936 MSAEGNLYNPYIFESCYPACWEPALEYLELVEQYPVPASYIRGHLFKLFHHVLCLAENQE 995
Query: 420 VRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYV 479
R + + ++ + LR+R++ YHEGR +W +NL LPPW+CQPYV
Sbjct: 996 ERESLATNSTMEAFKSVTYALRDRYLSYHEGRLIW-----QTGKTDYNLELPPWLCQPYV 1050
Query: 480 RPTPEQ 485
R P++
Sbjct: 1051 REPPQE 1056
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91092412|ref|XP_967539.1| PREDICTED: similar to t-diRNAhydrouridine synthase [Tribolium castaneum] gi|270004747|gb|EFA01195.1| hypothetical protein TcasGA2_TC010522 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/340 (56%), Positives = 256/340 (75%), Gaps = 3/340 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG+P I+APMVDASELPWRLLSR+YG+ LCYTPM+ + F D K R E L S D+P
Sbjct: 8 LGAPTKIVAPMVDASELPWRLLSRKYGAQLCYTPMLHSAIFARDAKYRNEALASCEIDKP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFCGND K + EAA LA+ HC IDIN+GCPQ +AKRGHYGA+LQD+WPLL +VS
Sbjct: 68 LIVQFCGNDPKVMLEAALLAQDHCCAIDINLGCPQAIAKRGHYGAFLQDEWPLLHEIVSL 127
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L Q ++VP++CK+R ++ V KTV+YA+ML AGC++L VHGRT +Q+G TGLA W ++
Sbjct: 128 LSQRLKVPITCKVRRFESVEKTVDYAKMLVSAGCKMLTVHGRTREQKGPLTGLADWSYVK 187
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+A+ IPVI+NGNIQC+ DV+ CL +TG GVMTAEGNLYNPALF Q PAWE A E
Sbjct: 188 AVREAVDIPVISNGNIQCMQDVDRCLEETGAVGVMTAEGNLYNPALFMHQNPPAWEPALE 247
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+LV ++P L Y RGH+F + HH+L++P+N+D+R+ +G N +++ ++ V+++++ +
Sbjct: 248 YLNLVDKFPCPLSYIRGHLFKLFHHVLSIPKNNDLRIQLGAANTLEEFKRIVNVMKDLYE 307
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+H+G KLW N NL LPPW+CQPYVR PE+
Sbjct: 308 PFHQGTKLWQDTT---ERNTENLILPPWLCQPYVRVCPEE 344
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307182359|gb|EFN69626.1| tRNA-dihydrouridine synthase 1-like [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/345 (55%), Positives = 248/345 (71%), Gaps = 5/345 (1%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
++ LGSPR I+APMVDASEL WRLLSRR+G+ LCYTPM+ + F D K R+E L ST
Sbjct: 15 NVWEDLGSPRCIIAPMVDASELAWRLLSRRHGAQLCYTPMLHSTVFCRDPKYRREALAST 74
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
EDRPLI+QFCGND L EAA+LAEP+CD IDINIGCPQ +AKRGHYGA+LQDDW LL
Sbjct: 75 SEDRPLIVQFCGNDPDVLLEAARLAEPYCDAIDINIGCPQAIAKRGHYGAFLQDDWILLN 134
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
+VS+L+ + +PV+CK+R++ ++N+TVEYARML+ AG LL +HGRT +Q+G TGLAS
Sbjct: 135 RIVSTLKNGLHIPVTCKLRVFSEINRTVEYARMLQDAGASLLTIHGRTREQKGSLTGLAS 194
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
WEHI AVR A+ IPVIANGNIQC+ D++ C+ + V GVM+AEGNLYNP +F + W
Sbjct: 195 WEHIKAVRDAVEIPVIANGNIQCMQDLQRCIEEIQVQGVMSAEGNLYNPYIFESRYPACW 254
Query: 381 ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDML 440
E A EYL+LV QYP Y RGH+F + HH+ L EN + R + + ++ + V L
Sbjct: 255 EPALEYLELVEQYPAPASYIRGHLFKLFHHVFCLTENREERENLATNSSMEAFKNVVYTL 314
Query: 441 RERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
R+R++ YHEG W +NL LPPW+CQPYVR P++
Sbjct: 315 RDRYLPYHEGHLTW-----QTEKTDYNLKLPPWLCQPYVREPPQE 354
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170034571|ref|XP_001845147.1| t-diRNAhydrouridine synthase [Culex quinquefasciatus] gi|167875928|gb|EDS39311.1| t-diRNAhydrouridine synthase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/374 (49%), Positives = 259/374 (69%), Gaps = 9/374 (2%)
Query: 120 KKLRQEILMSTPEDRPLIIQRTIFPR-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYT 178
K+ ++ +++T + RP + + + LGSP++++APMVDASEL WRLLSRR+G+ LCY+
Sbjct: 75 KRTAKQPVVATRQQRPKLAGFEFYEKILGSPKYVVAPMVDASELAWRLLSRRHGAQLCYS 134
Query: 179 PMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGC 238
PM + F D K R++ L + PEDRPLIIQFCGND K L EA LA+ HCD IDIN+GC
Sbjct: 135 PMFHSSCFTKDPKYRKDSLQTCPEDRPLIIQFCGNDPKVLLEAGLLAQDHCDAIDINLGC 194
Query: 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG 298
PQ +AKRGHYGA+LQD+W LL +VS+L Q + VPV+CK+RI++D+ KT+ YA+MLE AG
Sbjct: 195 PQAIAKRGHYGAFLQDEWDLLKKIVSTLHQNLSVPVTCKVRIFEDMAKTIRYAKMLESAG 254
Query: 299 CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358
CQ+L VHGRT DQ+G TG+A W+++ +++ + IPV++NGNI + DV C+ +TGV G
Sbjct: 255 CQMLVVHGRTRDQKGPLTGVADWKYVKVLKEIMKIPVLSNGNIMSVEDVHRCIEETGVNG 314
Query: 359 VMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENS 418
VMTAEGNL+NP LF G +W +A EYLD+V +YP + Y RGH+F + HHL+ L N
Sbjct: 315 VMTAEGNLFNPFLFEGINPTSWTVALEYLDIVEKYPAPISYIRGHLFKILHHLMNLKSNG 374
Query: 419 DVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWP--------PPNYPMSSNHHNLSL 470
+R + ++ + D R V L ++ +HEG + W PP +NL+L
Sbjct: 375 PLREQMATSHSVADFRAIVKQLEAKYEPFHEGLQRWTGEETNTEQPPESEPDQPTYNLAL 434
Query: 471 PPWICQPYVRPTPE 484
PPW+CQPY+R PE
Sbjct: 435 PPWLCQPYIRAPPE 448
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| FB|FBgn0031238 | 505 | CG3645 [Drosophila melanogaste | 0.694 | 0.669 | 0.519 | 3.3e-102 | |
| UNIPROTKB|E1BWI8 | 486 | DUS1L "Uncharacterized protein | 0.677 | 0.679 | 0.513 | 3.8e-94 | |
| UNIPROTKB|E1C6D2 | 478 | DUS1L "Uncharacterized protein | 0.677 | 0.690 | 0.513 | 3.8e-94 | |
| UNIPROTKB|J9NYR0 | 584 | DUS1L "Uncharacterized protein | 0.665 | 0.554 | 0.532 | 4.8e-94 | |
| UNIPROTKB|E2R9L8 | 475 | DUS1L "Uncharacterized protein | 0.665 | 0.682 | 0.532 | 4.8e-94 | |
| UNIPROTKB|Q6P1R4 | 473 | DUS1L "tRNA-dihydrouridine(16/ | 0.669 | 0.689 | 0.527 | 4.8e-94 | |
| UNIPROTKB|G3N340 | 475 | DUS1L "Uncharacterized protein | 0.679 | 0.696 | 0.526 | 6.1e-94 | |
| MGI|MGI:1915980 | 475 | Dus1l "dihydrouridine synthase | 0.675 | 0.692 | 0.526 | 6.1e-94 | |
| ZFIN|ZDB-GENE-030131-1435 | 511 | dus1l "dihydrouridine synthase | 0.673 | 0.641 | 0.513 | 2.1e-93 | |
| RGD|708389 | 438 | Pp3111 "PP3111 protein" [Rattu | 0.675 | 0.751 | 0.520 | 7e-93 |
| FB|FBgn0031238 CG3645 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1013 (361.7 bits), Expect = 3.3e-102, P = 3.3e-102
Identities = 176/339 (51%), Positives = 246/339 (72%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 25 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRP 84
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +VS+
Sbjct: 85 LIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVST 144
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + VPV+CKIRI++D+ KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A+W +I
Sbjct: 145 LHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNYIK 204
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VR+ + IP++ANGNI L DV CL +TGV GVM+AEGNL+NPA+F G + P W++A E
Sbjct: 205 NVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGVSPPVWQMAHE 264
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+LV +P + RGH+F + HH++ + +NS++R + N + + V +R ++
Sbjct: 265 YLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELRQYLATANQLVQFQAVVQQVRAKYE 324
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
+H+G + P S +L L PW+CQPY+R +PE
Sbjct: 325 PFHKGEVPYEPEQMAAGSEE-DLPLSPWLCQPYIRASPE 362
|
|
| UNIPROTKB|E1BWI8 DUS1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
Identities = 177/345 (51%), Positives = 240/345 (69%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM--STPED 203
L +++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L + PED
Sbjct: 14 LRGAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFLRDANYRRENLYGEACPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VP++CKIR++ +++KTV+YA+MLE+AGCQLL VHGRT +Q+G G+ASWEH
Sbjct: 134 LLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA++IPV ANGNIQCL+DVE C+ +TGV GVM+AEGNL+NPALF G+ WE+A
Sbjct: 194 IQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFEGRNPLVWEMA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDM-LR 441
EYL++V +YP L Y R H+F + HH L + + L KT I D+ + + + +
Sbjct: 254 EEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQLREELAKVKTLEGIVDVNRELKLRCQ 313
Query: 442 ERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQ 486
E + EG K P P H WICQPY+RP P+++
Sbjct: 314 EEIANQKEGEK--PKEGLPF---FH------WICQPYIRPGPKER 347
|
|
| UNIPROTKB|E1C6D2 DUS1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
Identities = 177/345 (51%), Positives = 240/345 (69%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM--STPED 203
L +++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L + PED
Sbjct: 14 LRGAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFLRDANYRRENLYGEACPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VP++CKIR++ +++KTV+YA+MLE+AGCQLL VHGRT +Q+G G+ASWEH
Sbjct: 134 LLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA++IPV ANGNIQCL+DVE C+ +TGV GVM+AEGNL+NPALF G+ WE+A
Sbjct: 194 IQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFEGRNPLVWEMA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDM-LR 441
EYL++V +YP L Y R H+F + HH L + + L KT I D+ + + + +
Sbjct: 254 EEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQLREELAKVKTLEGIVDVNRELKLRCQ 313
Query: 442 ERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQ 486
E + EG K P P H WICQPY+RP P+++
Sbjct: 314 EEIANQKEGEK--PKEGLPF---FH------WICQPYIRPGPKER 347
|
|
| UNIPROTKB|J9NYR0 DUS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 186/349 (53%), Positives = 237/349 (67%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV+YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVGKT--NHIKDLRKA 436
EYLD+V Q+P L Y R H+F + HH L + E + V+ L G T N LR
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEGVTAVNQELKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
D+ R++ EG K P P H WICQPY RP P +
Sbjct: 314 EDISRQK-----EGEK--PSGGLPF---FH------WICQPYFRPGPRE 346
|
|
| UNIPROTKB|E2R9L8 DUS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 186/349 (53%), Positives = 237/349 (67%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV+YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVGKT--NHIKDLRKA 436
EYLD+V Q+P L Y R H+F + HH L + E + V+ L G T N LR
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEGVTAVNQELKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
D+ R++ EG K P P H WICQPY RP P +
Sbjct: 314 EDISRQK-----EGEK--PSGGLPF---FH------WICQPYFRPGPRE 346
|
|
| UNIPROTKB|Q6P1R4 DUS1L "tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 182/345 (52%), Positives = 235/345 (68%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V ++P L Y R H+F + HH TL + ++R + K ++ + L+ R
Sbjct: 254 EEYLDIVREHPCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLR 311
Query: 444 F---IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P H WICQPY+RP P +
Sbjct: 312 CQEEISRQEGAK--PTGDLPF----H------WICQPYIRPGPRE 344
|
|
| UNIPROTKB|G3N340 DUS1L "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 180/342 (52%), Positives = 234/342 (68%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+HLCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMR 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ V PV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 TWGHMVVGCPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+TIPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVTIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V Q+P L Y R H+F + HH TL + +R + K ++ + L+ R
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHH--TLQVHQQLREELAKVKTLEGIAAVSQELKLR 311
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ +K P+ + H WICQPY RP P++
Sbjct: 312 CQEDISRQKEGEKPSGGLPFFH-------WICQPYFRPGPKE 346
|
|
| MGI|MGI:1915980 Dus1l "dihydrouridine synthase 1-like (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 181/344 (52%), Positives = 234/344 (68%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDM-LR 441
EYLD+V Q+P L Y R H+F + HH L + + L KT + + +A+ + +
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGVAAVSQALKLRCQ 313
Query: 442 ERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
E EG + P N P H WICQPY+RP P +
Sbjct: 314 EDMSRQQEGVR--PADNLPA---FH------WICQPYIRPGPRE 346
|
|
| ZFIN|ZDB-GENE-030131-1435 dus1l "dihydrouridine synthase 1-like (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 176/343 (51%), Positives = 236/343 (68%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
L RF++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L S ED
Sbjct: 46 LKGARFVVAPMVDQSELAWRLLSRRHGAELCYTPMLHAQVFVRDANYRRENLYSEVNQED 105
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYG +LQD+W LL ++
Sbjct: 106 RPLITQFCANDPEVFIQAALLAQDYCDAIDLNLGCPQMIAKRGHYGVFLQDEWDLLEKMI 165
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VP++CKIR++ ++ KTV+YA+MLE+AGCQLL VHGRT DQ+G TG+ASW+H
Sbjct: 166 KLANEKLSVPITCKIRVFPEIEKTVKYAKMLEKAGCQLLTVHGRTKDQKGALTGIASWKH 225
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVR+A+ IPV ANGNIQ L+DV C+ +TGV GVM+AEGNL+NPALF G++ P WE+A
Sbjct: 226 IKAVREAVNIPVFANGNIQHLSDVHHCMEETGVQGVMSAEGNLHNPALFEGRSPPVWEMA 285
Query: 384 SEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRE 442
EYLD+V ++ P L + R H+F + HH TL + D+R + K ++ + + L++
Sbjct: 286 EEYLDIVEKHSPCSLSFVRAHIFKLWHH--TLQIHQDLREDLAKAKNVDGIVEVNRQLKQ 343
Query: 443 RFID-YHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
R + + W N L P WICQPYVRP P+
Sbjct: 344 RCQEEMAKDESEW---------NQTGLPFPHWICQPYVRPPPK 377
|
|
| RGD|708389 Pp3111 "PP3111 protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 179/344 (52%), Positives = 234/344 (68%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNI+CL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDM-LR 441
EYLD+V Q+P L Y R H+F + HH L + + L KT + + +A+ + +
Sbjct: 254 DEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGVAAVSQALKLRCQ 313
Query: 442 ERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
E EG + P N P H WICQPY+RP P++
Sbjct: 314 EDMARQQEGVR--PADNLPA---FH------WICQPYIRPGPKE 346
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6P1R4 | DUS1L_HUMAN | 1, ., 3, ., 1, ., - | 0.5246 | 0.6694 | 0.6892 | yes | N/A |
| Q8C2P3 | DUS1L_MOUSE | 1, ., 3, ., 1, ., - | 0.5272 | 0.6652 | 0.6821 | yes | N/A |
| Q9HGN6 | DUS1_SCHPO | 1, ., 3, ., 1, ., 8, 8 | 0.3884 | 0.6981 | 0.8521 | yes | N/A |
| Q8K582 | DUS1L_RAT | 1, ., 3, ., 1, ., - | 0.5214 | 0.6652 | 0.7397 | yes | N/A |
| P53759 | DUS1_YEAST | 1, ., 3, ., 1, ., 8, 8 | 0.3897 | 0.6858 | 0.7895 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 487 | |||
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 1e-99 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 1e-75 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 6e-69 | |
| TIGR00737 | 319 | TIGR00737, nifR3_yhdG, putative TIM-barrel protein | 1e-49 | |
| TIGR00742 | 318 | TIGR00742, yjbN, tRNA dihydrouridine synthase A | 7e-24 | |
| PRK10415 | 321 | PRK10415, PRK10415, tRNA-dihydrouridine synthase B | 1e-23 | |
| PRK10550 | 312 | PRK10550, PRK10550, tRNA-dihydrouridine synthase C | 3e-21 | |
| PRK11815 | 333 | PRK11815, PRK11815, tRNA-dihydrouridine synthase A | 3e-20 | |
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 5e-18 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 1e-10 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 2e-10 | |
| TIGR01037 | 300 | TIGR01037, pyrD_sub1_fam, dihydroorotate dehydroge | 5e-10 | |
| cd02810 | 289 | cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogena | 7e-09 | |
| cd02803 | 327 | cd02803, OYE_like_FMN_family, Old yellow enzyme (O | 1e-08 | |
| PRK07259 | 301 | PRK07259, PRK07259, dihydroorotate dehydrogenase 1 | 2e-06 | |
| cd04740 | 296 | cd04740, DHOD_1B_like, Dihydroorotate dehydrogenas | 1e-05 | |
| TIGR00737 | 319 | TIGR00737, nifR3_yhdG, putative TIM-barrel protein | 3e-05 | |
| TIGR03572 | 232 | TIGR03572, WbuZ, glycosyl amidation-associated pro | 3e-05 | |
| cd02940 | 299 | cd02940, DHPD_FMN, Dihydropyrimidine dehydrogenase | 6e-05 | |
| cd04732 | 234 | cd04732, HisA, HisA | 6e-05 | |
| COG0106 | 241 | COG0106, HisA, Phosphoribosylformimino-5-aminoimid | 7e-05 | |
| PRK01033 | 258 | PRK01033, PRK01033, imidazole glycerol phosphate s | 1e-04 | |
| cd04731 | 243 | cd04731, HisF, The cyclase subunit of imidazolegly | 2e-04 | |
| pfam00977 | 230 | pfam00977, His_biosynth, Histidine biosynthesis pr | 2e-04 | |
| PRK00748 | 233 | PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5- ph | 7e-04 | |
| TIGR00742 | 318 | TIGR00742, yjbN, tRNA dihydrouridine synthase A | 8e-04 | |
| PRK13585 | 241 | PRK13585, PRK13585, 1-(5-phosphoribosyl)-5-[(5- ph | 0.001 | |
| COG0167 | 310 | COG0167, PyrD, Dihydroorotate dehydrogenase [Nucle | 0.002 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 1e-99
Identities = 107/233 (45%), Positives = 146/233 (62%), Gaps = 4/233 (1%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ ILAPMV ++LP+RLL RRYG+ L YT M+SA + + R +L PE+RPLI+Q
Sbjct: 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQ 60
Query: 210 FCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G+D + L EAAK+ E DGID+N+GCP +G GA L D L+ +V ++R+
Sbjct: 61 LGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVRE 120
Query: 269 AVQVPVSCKIRI-YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
AV +PV+ KIR+ + D +T+E A+ LE AG L VHGRT +QR +G A W++I +
Sbjct: 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQR--YSGPADWDYIAEI 178
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
++A++IPVIANG+I L D CL QTGV GVM G L NP LF
Sbjct: 179 KEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKELLE 231
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 239 bits (613), Expect = 1e-75
Identities = 108/278 (38%), Positives = 146/278 (52%), Gaps = 22/278 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSH-LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+LAPM ++LP+R L R YG+ L T MV+A + +K R+ +L E PL +Q
Sbjct: 1 LLAPMAGVTDLPFRRLVREYGAGDLVVTEMVTAKAQLRPEKQRELMLPELEEPTPLAVQL 60
Query: 211 CGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D L EAAKL D IDIN+GCP RG GA L D L+ +V ++ +A
Sbjct: 61 GGSDPALLAEAAKLVADLGADIIDINMGCPAKKVTRGGAGAALLRDPDLVAQIVKAVVKA 120
Query: 270 VQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V +PV+ KIRI D + VE AR +E AG Q L VHGRT Q G A W+ I V
Sbjct: 121 VDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGRTRAQNY--EGPADWDAIKQV 178
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR---------- 377
++A++IPVIANG+I D + CL+ TG GVM G L NP LF Q
Sbjct: 179 KQAVSIPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWLFAEQHTVKTGEFDPRP 238
Query: 378 PAWE---LASEYLDLVAQY---PVRLQYARGHVFNMCH 409
P E + E+L + ++ L++AR H+
Sbjct: 239 PLAEEAEIVLEHLSYLEEFYGEDKGLRHARKHLAWYLK 276
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 6e-69
Identities = 115/327 (35%), Positives = 165/327 (50%), Gaps = 36/327 (11%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFI-ADKKLRQEILMS 199
I R ILAPM ++LP+R L+R G+ L YT MVSA + KK +
Sbjct: 4 IGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDEL 63
Query: 200 TPEDRPLIIQFCGNDSKNLTEAAKLAEPHC-DGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
E+RP+ +Q G+D + L EAAK+AE D ID+N GCP +G GA L + L
Sbjct: 64 -EEERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPEL 122
Query: 259 LTNLVSSLRQAV-QVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
L +V ++ +AV +PV+ KIR+ D+ +E AR+LE AG L VHGRT Q
Sbjct: 123 LAEIVKAMVEAVGDIPVTVKIRLGWDDDDIL-ALEIARILEDAGADALTVHGRTRAQGY- 180
Query: 315 NTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF- 372
G A W++I +++A+ +IPVIANG+I+ L D + L TG GVM G L NP LF
Sbjct: 181 -LGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFR 239
Query: 373 ------TGQTRPA-W----ELASEYLDLVAQYPVRLQYARGHVFNMCHHLL----TLPEN 417
TG+ P ++ E+L+L+ +Y Y + + + HL LP
Sbjct: 240 QIDYLETGELLPPTLAEVLDILREHLELLLEY-----YGKKGLRRLRKHLGYYLKGLPGA 294
Query: 418 SDVRLLVGKTNHIKDLRKAVDMLRERF 444
++R N +D + L F
Sbjct: 295 RELR---RALNKAEDGAEVRRALEAVF 318
|
Length = 323 |
| >gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 1e-49
Identities = 110/317 (34%), Positives = 159/317 (50%), Gaps = 31/317 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM ++ P+R L YG+ L MVS+ + D + +L ++ P+ +Q
Sbjct: 9 RVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQ 68
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G+D + EAAK+ E D IDIN+GCP + K+G A L+D L+ +V ++
Sbjct: 69 LFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDP-DLIGKIVKAVV 127
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV +PV+ KIRI D VE AR+ E AG Q + +HGRT Q +G A+W+ I
Sbjct: 128 DAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQ--GYSGEANWDIIA 185
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
V++A+ IPVI NG+I D +A L TG GVM G L NP LF TG+ +
Sbjct: 186 RVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYK 245
Query: 378 PAWELAS------EYLDLVAQY---PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTN 428
P A +L L+A Y L+ AR H+ +L P N+ +R + N
Sbjct: 246 PPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHI---AWYLKGFPGNAALRQTL---N 299
Query: 429 HIKDLRKAVDMLRERFI 445
H + V L + F
Sbjct: 300 HASS-FQEVKQLLDDFF 315
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319 |
| >gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-24
Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 27/246 (10%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSH-LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
RF +APM+D ++ +R R H L YT M++A I K ++IL +PE+ P+ +
Sbjct: 2 RFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDK--KDILKFSPEESPVAL 59
Query: 209 QFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q G+D +L + AK+AE D I++N+GCP + G++GA L + L+ + V +++
Sbjct: 60 QLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQ 119
Query: 268 QAVQVPVSCKIRI-------YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM----NT 316
+AV +PV+ K RI Y+ + ++ ++ GCQ VH R G+ N
Sbjct: 120 EAVNIPVTVKHRIGIDPLDSYEFL---CDFVEIVSGKGCQNFIVHARKAWLSGLSPKENR 176
Query: 317 GLASWEHITAVR-----KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
+ + + LTI + NG I+ ++ L+ V GVM NP L
Sbjct: 177 EIPPLRYERVYQLKKDFPHLTIEI--NGGIKNSEQIKQHLSH--VDGVMVGREAYENPYL 232
Query: 372 FTGQTR 377
R
Sbjct: 233 LANVDR 238
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318 |
| >gnl|CDD|182440 PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 80/248 (32%), Positives = 121/248 (48%), Gaps = 19/248 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAH-QFIADKKLRQEILMSTPEDRPLI- 207
R I APM ++ P+R L G+ L + M+S++ Q K R ++ D P I
Sbjct: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHI---DEPGIR 67
Query: 208 -IQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
+Q G+D K + +AA++ E IDIN+GCP R G+ L L+ ++++
Sbjct: 68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTE 127
Query: 266 LRQAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ AV VPV+ KIR + VE A++ E G Q L +HGRT + + G A ++
Sbjct: 128 VVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT--RACLFNGEAEYDS 185
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ 375
I AV++ ++IPVIANG+I A L TG +M P +F TG+
Sbjct: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE 245
Query: 376 TRPAWELA 383
P LA
Sbjct: 246 LLPPLPLA 253
|
Length = 321 |
| >gnl|CDD|236713 PRK10550, PRK10550, tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 3e-21
Identities = 63/176 (35%), Positives = 87/176 (49%), Gaps = 5/176 (2%)
Query: 200 TPEDRPLIIQFCGNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
TP + IQ G + L E AA+ E G+D+N GCP GA L D L
Sbjct: 59 TPSGTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPEL 118
Query: 259 LTNLVSSLRQAV--QVPVSCKIRIYQDV-NKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
+ ++R+AV +PV+ K+R+ D + E A +++AG L VHGRT + G
Sbjct: 119 IYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED-GYR 177
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
+W+ I +R+ LTIPVIANG I + C+A TG VM G L P L
Sbjct: 178 AEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNL 233
|
Length = 312 |
| >gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (228), Expect = 3e-20
Identities = 63/177 (35%), Positives = 90/177 (50%), Gaps = 30/177 (16%)
Query: 148 SPRFILAPMVDASELPW---------RLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 198
S RF +APM+D W RLLSR L YT MV+ I + R +L
Sbjct: 10 SRRFSVAPMMD-----WTDRHCRYFHRLLSRHA---LLYTEMVTTGAIIHGDRER--LLA 59
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
PE+ P+ +Q G+D +L EAAKLAE D I++N+GCP + G +GA L +
Sbjct: 60 FDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPE 119
Query: 258 LLTNLVSSLRQAVQVPVSCKIRI-------YQDVNKTVEYARMLERAGCQLLAVHGR 307
L+ + V +++ AV +PV+ K RI Y+ + V+ + E AGC VH R
Sbjct: 120 LVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVD--TVAE-AGCDTFIVHAR 173
|
Length = 333 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 5e-18
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ ILAPMV ++LP+RLL RRYG+ L YT M+SA + + R +L PE+RPLI+Q
Sbjct: 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQ 60
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 82 ILAPMVDASELPWRLLSRRYGSH-LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+LAPM ++LP+R L R YG+ L T MV+A + +K R+ +L E PL +Q
Sbjct: 1 LLAPMAGVTDLPFRRLVREYGAGDLVVTEMVTAKAQLRPEKQRELMLPELEEPTPLAVQ 59
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFI-ADKKLRQEILMSTPEDR 134
R ILAPM ++LP+R L+R G+ L YT MVSA + KK + E+R
Sbjct: 9 LRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDEL-EEER 67
Query: 135 PLIIQ 139
P+ +Q
Sbjct: 68 PVAVQ 72
|
Length = 323 |
| >gnl|CDD|130109 TIGR01037, pyrD_sub1_fam, dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 37/209 (17%)
Query: 190 KKLRQEILMSTPE-DRPLIIQFCGNDSKNLTEAAK---LAEPHCDGIDINIGCPQMVAKR 245
+ +E+ E PLI G+ + E A+ A P+ D ++N+ CP +
Sbjct: 76 EAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKG-- 133
Query: 246 GHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVH 305
G + D L ++V +++ VPV K+ +V E A+ E AG L
Sbjct: 134 --GGIAIGQDPELSADVVKAVKDKTDVPVFAKLS--PNVTDITEIAKAAEEAGADGL-TL 188
Query: 306 GRTVDQRGMNTGLASWEHITA---------------------VRKALTIPVIANGNIQCL 344
T+ RGM + + + I A V K + IP+I G I
Sbjct: 189 INTL--RGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSF 246
Query: 345 AD-VEACLAQTGVAGVMTAEGNLYNPALF 372
D +E +A G + V Y F
Sbjct: 247 EDALEFLMA--GASAVQVGTAVYYRGFAF 273
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. Length = 300 |
| >gnl|CDD|239204 cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 7e-09
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 28/192 (14%)
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
+PLI G+ ++ E A+ E +++N+ CP + R D + N
Sbjct: 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLG-----QDPEAVAN 152
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA----VHGRTVDQRGMNTG 317
L+ +++ AV +P+ K+ Y D+ VE A+ ERAG L + GR VD + + G
Sbjct: 153 LLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPG 212
Query: 318 LAS----------------WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361
W A R L IP+I G I DV L G + V
Sbjct: 213 PKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEML-MAGASAVQV 271
Query: 362 AEGNLYN-PALF 372
A +++ P +
Sbjct: 272 ATALMWDGPDVI 283
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. Length = 289 |
| >gnl|CDD|239201 cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 14/128 (10%)
Query: 258 LLTNLVSSLRQAV--QVPVSCKIRIYQDVNK------TVEYARMLERAGCQLLAVHGRTV 309
L +V+++R+AV PV ++ V +E A+ LE AG L V G +
Sbjct: 193 FLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSY 252
Query: 310 DQRGMNTG------LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363
+ E ++KA+ IPVIA G I+ E LA+ V
Sbjct: 253 ESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGR 312
Query: 364 GNLYNPAL 371
L +P L
Sbjct: 313 ALLADPDL 320
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. Length = 327 |
| >gnl|CDD|235982 PRK07259, PRK07259, dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 45/199 (22%)
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
D P+I G+ + E A+ P+ D I++NI CP K H G D L
Sbjct: 91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPN--VK--HGGMAFGTDPELAY 146
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ-LLAVHGRTVDQRGM----N 315
+V ++++ V+VPV K+ V VE A+ E AG L ++ T+ +GM
Sbjct: 147 EVVKAVKEVVKVPVIVKLTPN--VTDIVEIAKAAEEAGADGLSLIN--TL--KGMAIDIK 200
Query: 316 TG---LASWEHIT-----------AVR------KALTIPVIANGNIQCLAD-VEACLA-Q 353
T LA ++T A+R +A+ IP+I G I D +E +A
Sbjct: 201 TRKPILA---NVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGA 257
Query: 354 TGVAGVMTAEGNLYNPALF 372
+ V V TA N Y+P F
Sbjct: 258 SAVQ-VGTA--NFYDPYAF 273
|
Length = 301 |
| >gnl|CDD|240091 cd04740, DHOD_1B_like, Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 51/171 (29%), Positives = 69/171 (40%), Gaps = 27/171 (15%)
Query: 221 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280
A KLA+ D I++NI CP G D + +V ++++A VPV K+
Sbjct: 108 AEKLADAGADAIELNISCPN----VKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT- 162
Query: 281 YQDVNKTVEYARMLERAGCQLL----AVHGRTVDQR------GMNTGLAS--WEHITAVR 328
+V VE AR E AG L + G +D G TG S A+R
Sbjct: 163 -PNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALR 221
Query: 329 ------KALTIPVIANGNIQCLADV-EACLAQTGVAGVMTAEGNLYNPALF 372
KA+ IP+I G I D E +A V TA N +P F
Sbjct: 222 MVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTA--NFVDPEAF 270
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. Length = 296 |
| >gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
QL S R +LAPM ++ P+R L YG+ L MVS+ + D + +L ++
Sbjct: 5 QLKS-RVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDET 63
Query: 135 PLIIQ 139
P+ +Q
Sbjct: 64 PISVQ 68
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319 |
| >gnl|CDD|132611 TIGR03572, WbuZ, glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 18/121 (14%)
Query: 257 PLLTNLVSSL--RQAVQVPVSCK-------IRIYQDVNKT------VEYARMLERAGCQL 301
P L + Q V V + K ++Y D + VE+AR E+ G
Sbjct: 110 PDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGE 169
Query: 302 LAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361
+ ++ ++D+ G G E I V A++IPVIA G L D+ + G + V
Sbjct: 170 ILLN--SIDRDGTMKGY-DLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226
Query: 362 A 362
A
Sbjct: 227 A 227
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli , IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to proteins provide ammonium ions to the amidotransferase when these are in low concentration. WbuY (like HisH) is proposed to act as a glutaminase to release ammonium. In histidine biosynthesis this is also dispensible in the presence of exogenous ammonium ion. HisH and HisF form a complex such that the ammonium ion is passed directly to HisF where it is used in an amidation reaction causing a subsequent cleavage and cyclization. In the case of WbuYZ, the ammonium ion would be passed from WbuY to WbuZ. WbuZ, being non-essential and so similar to HisF that a sugar substrate is unlikely, would function instead as a amoonium channel to the WbuX protein which does the enzymatic work. Length = 232 |
| >gnl|CDD|239244 cd02940, DHPD_FMN, Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 203 DRPLIIQ-FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
D+ LI C + ++ TE AKL E D +++N CP + +RG GA + D L+
Sbjct: 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERG-MGAAVGQDPELVE 157
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
+ +R+AV++PV K+ ++ E AR + G
Sbjct: 158 EICRWVREAVKIPVIAKLT--PNITDIREIARAAKEGGA 194
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. Length = 299 |
| >gnl|CDD|240083 cd04732, HisA, HisA | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 6e-05
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 288 VEYARMLERAGCQLLAVHGRT-VDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD 346
E A+ E G + + T + + G +G ++E + A IPVIA+G + L D
Sbjct: 149 EELAKRFEELGVKAIIY---TDISRDGTLSG-PNFELYKELAAATGIPVIASGGVSSLDD 204
Query: 347 VEACLAQTGVAGV 359
++A L + GVAGV
Sbjct: 205 IKA-LKELGVAGV 216
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''- phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. Length = 234 |
| >gnl|CDD|223184 COG0106, HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 7e-05
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 288 VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADV 347
E A+ LE G + + D G +G + + + + +A+ IPVIA+G + L D+
Sbjct: 150 EELAKRLEEVGLAHILYTDISRD--GTLSGP-NVDLVKELAEAVDIPVIASGGVSSLDDI 206
Query: 348 EACLAQTGVAGV 359
+A +GV GV
Sbjct: 207 KALKELSGVEGV 218
|
Length = 241 |
| >gnl|CDD|234891 PRK01033, PRK01033, imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 48/208 (23%), Positives = 76/208 (36%), Gaps = 58/208 (27%)
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDIN---IGCPQMV---A 243
+ L E M PL G K L +A K+ + + IN + P ++ A
Sbjct: 67 ENLASECFM------PLCY---GGGIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAA 117
Query: 244 KRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR------IYQDVNKT-------VEY 290
+R +G Q+V V + K +Y N T +E
Sbjct: 118 ER--FG-----------------SQSVVVSIDVKKNLGGKFDVYTH-NGTKKLKKDPLEL 157
Query: 291 ARMLERAG-CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEA 349
A+ E G ++L ++D+ G G E + + R AL IP+IA G L D+
Sbjct: 158 AKEYEALGAGEILL---NSIDRDGTMKGY-DLELLKSFRNALKIPLIALGGAGSLDDIVE 213
Query: 350 CLAQTGVAGVMTAEGNLYNPALFTGQTR 377
+ G A G+L+ F G +
Sbjct: 214 AILNLGADAA--AAGSLFV---FKGVYK 236
|
Length = 258 |
| >gnl|CDD|240082 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 2e-04
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 287 TVEYARMLERAGCQ--LLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCL 344
VE+A+ +E G LL ++D+ G G E I AV A+ IPVIA+G
Sbjct: 151 AVEWAKEVEELGAGEILLT----SMDRDGTKKGYDL-ELIRAVSSAVNIPVIASGGAGKP 205
Query: 345 ADVEACLAQTGVAGVMTA 362
+ G + A
Sbjct: 206 EHFVEAFEEGGADAALAA 223
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. Length = 243 |
| >gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLA 345
VE+A+ LE G + + +D+ G +G E + +A+ IPVIA+G + L
Sbjct: 149 DAVEWAKKLEELGAGEILLT--DIDRDGTLSGPD-LELTRELAEAVNIPVIASGGVGSLE 205
Query: 346 DVEACLAQTGVAGVMTA 362
D++ L GV GV+
Sbjct: 206 DLKE-LFSEGVDGVIAG 221
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalyzed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel . This family belong to the common phosphate binding site TIM barrel family. Length = 230 |
| >gnl|CDD|179108 PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 7e-04
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 288 VEYARMLERAGCQLLAVHGRT-VDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD 346
+ A+ E AG + + T + + G +G + E + A+ IPVIA+G + L D
Sbjct: 149 EDLAKRFEDAGVKAIIY---TDISRDGTLSG-PNVEATRELAAAVPIPVIASGGVSSLDD 204
Query: 347 VEACLAQTGVAGVMT 361
++A V GV+
Sbjct: 205 IKALKGLGAVEGVIV 219
|
Length = 233 |
| >gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSH-LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
RF +APM+D ++ +R R H L YT M++A I K ++IL +PE+ P+ +
Sbjct: 2 RFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDK--KDILKFSPEESPVAL 59
Query: 139 Q 139
Q
Sbjct: 60 Q 60
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318 |
| >gnl|CDD|184165 PRK13585, PRK13585, 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 287 TVEYARMLERAG-CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLA 345
VE A+ E G +L + VD G+ G+ + E + + ++ IPVIA+G + L
Sbjct: 151 PVEAAKRFEELGAGSILFTN---VDVEGLLEGVNT-EPVKELVDSVDIPVIASGGVTTLD 206
Query: 346 DVEACLAQTGVAGV 359
D+ A L + G AGV
Sbjct: 207 DLRA-LKEAGAAGV 219
|
Length = 241 |
| >gnl|CDD|223245 COG0167, PyrD, Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 190 KKLRQEILMSTPEDRPLIIQFCGN-DSKNLTEAAKLAE-----PHCDGIDINIGCPQMVA 243
+E+ ++ E +P+ + N + A A D I++NI CP
Sbjct: 79 DAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPG 138
Query: 244 KRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278
R L D LL L+ +++ A +VPV K+
Sbjct: 139 GRA-----LGQDPELLEKLLEAVKAATKVPVFVKL 168
|
Length = 310 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| KOG2335|consensus | 358 | 100.0 | ||
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 100.0 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 100.0 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 100.0 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 100.0 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 100.0 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 100.0 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 100.0 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 100.0 | |
| KOG2333|consensus | 614 | 100.0 | ||
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 100.0 | |
| KOG2334|consensus | 477 | 100.0 | ||
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.97 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.96 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.96 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.96 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.95 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.95 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.94 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.94 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.92 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.92 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.92 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.92 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 99.91 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.91 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.89 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.88 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.88 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 99.87 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 99.86 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.86 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 99.85 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.84 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 99.84 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 99.84 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 99.82 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 99.82 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 99.82 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 99.82 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.81 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.8 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.8 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.8 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 99.78 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.78 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.78 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 99.78 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.77 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.77 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 99.74 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.73 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.72 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.71 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.7 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.66 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.65 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 99.61 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.55 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 99.54 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 99.53 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.51 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.49 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.49 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.47 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.46 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.46 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.45 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 99.42 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.39 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.37 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.37 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.36 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.31 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.31 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.3 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 99.29 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.27 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.26 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 99.23 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.21 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.19 | |
| KOG2335|consensus | 358 | 99.16 | ||
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.12 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.09 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 99.08 | |
| KOG1436|consensus | 398 | 99.07 | ||
| PLN02535 | 364 | glycolate oxidase | 99.07 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.07 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 99.05 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 99.05 | |
| PLN02979 | 366 | glycolate oxidase | 99.05 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 99.04 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 99.01 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 98.99 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.98 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 98.96 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 98.92 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 98.91 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 98.91 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.9 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.9 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.86 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 98.79 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 98.78 | |
| KOG2333|consensus | 614 | 98.76 | ||
| KOG0134|consensus | 400 | 98.75 | ||
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.73 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.73 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.72 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 98.72 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.67 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 98.66 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 98.66 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.66 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 98.65 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.64 | |
| KOG0538|consensus | 363 | 98.61 | ||
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.59 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 98.59 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.55 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.55 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 98.54 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 98.54 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.53 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 98.52 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 98.49 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.48 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 98.48 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.48 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.47 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.45 | |
| KOG1799|consensus | 471 | 98.45 | ||
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 98.44 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 98.43 | |
| KOG1606|consensus | 296 | 98.43 | ||
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.42 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.41 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.41 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.41 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.38 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 98.37 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.37 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.36 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 98.34 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 98.32 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.29 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.27 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.27 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.27 | |
| KOG2334|consensus | 477 | 98.24 | ||
| PLN02591 | 250 | tryptophan synthase | 98.23 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 98.19 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.19 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.17 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.17 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.17 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 98.16 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 98.14 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 98.13 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.12 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 98.12 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 98.11 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.11 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 98.1 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.09 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.08 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 98.07 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 98.05 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.04 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 98.03 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.02 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.01 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.99 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.98 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.98 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 97.97 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 97.97 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 97.95 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 97.94 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 97.94 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 97.93 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 97.92 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 97.89 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 97.87 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 97.87 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 97.86 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.85 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 97.85 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.85 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.82 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 97.82 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 97.81 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 97.81 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.8 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 97.8 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 97.8 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 97.79 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.78 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 97.77 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.76 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 97.75 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 97.74 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.74 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 97.73 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 97.72 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 97.7 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 97.69 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 97.63 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 97.63 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 97.61 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 97.59 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 97.59 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 97.55 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.55 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.53 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 97.5 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.49 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.47 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 97.46 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 97.43 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 97.4 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.38 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 97.37 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 97.36 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 97.34 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.34 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 97.34 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 97.28 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 97.27 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.26 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.25 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 97.25 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 97.24 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.21 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 97.18 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.17 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 97.17 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.11 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 97.11 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 97.1 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 97.03 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.02 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 97.0 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 96.96 | |
| KOG2550|consensus | 503 | 96.95 | ||
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.95 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 96.93 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 96.93 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.92 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 96.91 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.9 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 96.9 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 96.89 | |
| PRK08005 | 210 | epimerase; Validated | 96.89 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 96.87 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 96.86 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 96.86 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.82 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 96.82 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 96.76 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 96.75 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 96.75 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 96.7 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 96.67 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 96.63 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 96.6 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 96.6 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 96.59 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 96.54 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 96.52 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.5 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 96.49 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 96.48 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 96.45 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 96.44 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 96.42 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 96.42 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 96.4 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 96.4 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 96.39 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 96.38 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 96.36 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 96.36 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.35 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 96.34 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 96.34 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 96.33 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 96.32 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 96.32 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.31 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 96.28 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.27 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 96.23 | |
| PLN02979 | 366 | glycolate oxidase | 96.22 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 96.16 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 96.16 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 96.13 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 96.12 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 96.11 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 96.08 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 96.07 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 96.05 | |
| PLN02535 | 364 | glycolate oxidase | 96.04 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 96.04 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 96.02 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 96.02 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 96.02 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 96.01 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 95.98 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 95.97 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 95.92 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 95.92 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.92 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 95.91 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 95.9 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 95.9 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 95.89 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 95.88 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 95.87 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.85 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 95.84 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 95.84 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 95.84 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 95.83 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.83 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 95.81 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 95.79 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 95.77 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 95.75 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.74 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 95.74 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 95.71 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 95.67 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 95.67 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 95.62 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 95.59 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.59 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 95.59 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.54 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.54 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 95.52 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.51 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.51 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 95.51 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 95.5 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 95.44 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 95.44 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 95.44 | |
| PRK14057 | 254 | epimerase; Provisional | 95.41 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 95.4 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.37 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 95.37 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.35 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 95.35 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 95.32 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.32 | |
| PRK06852 | 304 | aldolase; Validated | 95.32 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 95.31 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 95.26 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 95.24 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 95.24 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 95.2 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.19 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 95.19 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 95.18 | |
| KOG0623|consensus | 541 | 95.16 | ||
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 95.14 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 95.11 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 95.08 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 95.07 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 95.07 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 95.04 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 95.03 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 95.03 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 95.0 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 94.99 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 94.97 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 94.97 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 94.94 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 94.93 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 94.93 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 94.91 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 94.88 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 94.87 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 94.86 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 94.84 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 94.84 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.84 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 94.83 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 94.82 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 94.82 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 94.81 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 94.79 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 94.74 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 94.72 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 94.69 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 94.62 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 94.56 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 94.5 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 94.48 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 94.47 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 94.46 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 94.46 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.41 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.39 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 94.39 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 94.38 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 94.37 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.37 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 94.33 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 94.32 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 94.31 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 94.29 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 94.27 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 94.27 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 94.26 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 94.25 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 94.25 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.22 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 94.22 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 94.21 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 94.19 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.14 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 94.13 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 94.05 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 94.05 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 93.97 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 93.95 | |
| KOG4175|consensus | 268 | 93.92 | ||
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 93.89 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 93.89 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 93.84 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 93.84 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 93.77 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 93.75 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 93.74 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 93.67 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 93.63 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 93.62 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 93.55 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 93.54 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 93.52 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 93.5 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 93.4 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 93.38 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 93.37 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.3 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 93.29 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 93.24 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 93.21 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 93.16 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 93.15 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 93.14 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 93.12 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 93.09 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 93.01 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 93.0 | |
| TIGR01740 | 213 | pyrF orotidine 5'-phosphate decarboxylase, subfami | 92.97 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 92.97 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 92.91 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 92.89 | |
| cd08209 | 391 | RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent | 92.84 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 92.8 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 92.79 | |
| TIGR03326 | 412 | rubisco_III ribulose bisphosphate carboxylase, typ | 92.79 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 92.73 | |
| cd08207 | 406 | RLP_NonPhot Ribulose bisphosphate carboxylase like | 92.71 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 92.69 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 92.68 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 92.64 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 92.47 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 92.46 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 92.42 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 92.42 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 92.39 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 92.37 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 92.33 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 92.31 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 92.29 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 92.27 | |
| cd01571 | 302 | NAPRTase_B Nicotinate phosphoribosyltransferase (N | 92.23 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 92.2 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 92.19 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 92.16 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 92.09 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 92.09 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 92.02 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 92.01 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 92.0 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 91.98 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 91.92 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 91.89 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.88 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 91.86 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 91.85 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 91.73 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 91.71 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 91.69 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 91.69 |
| >KOG2335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-62 Score=480.33 Aligned_cols=300 Identities=50% Similarity=0.833 Sum_probs=272.9
Q ss_pred chhhhhcCCCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCC
Q psy7343 70 SDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSP 149 (487)
Q Consensus 70 ~~~~~~~~~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~ 149 (487)
.-||.+++.+..++|||+++|++|||+|+|+||++++|||||.|+.|+++.+++...|++.++++|+++|+
T Consensus 10 ~~f~~~~~~~~ri~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf--------- 80 (358)
T KOG2335|consen 10 AIFWSKQGRPKRIVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQF--------- 80 (358)
T ss_pred HhhhhhcCCcccccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEE---------
Confidence 36777887887799999999999999999999999999999999999998888777777777777777774
Q ss_pred ccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcC
Q psy7343 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHC 229 (487)
Q Consensus 150 ~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~ 229 (487)
+|+|++.+.++|++++.++
T Consensus 81 -------------------------------------------------------------~~ndp~~ll~Aa~lv~~y~ 99 (358)
T KOG2335|consen 81 -------------------------------------------------------------GGNDPENLLKAARLVQPYC 99 (358)
T ss_pred -------------------------------------------------------------cCCCHHHHHHHHHHhhhhc
Confidence 3347788999999999999
Q ss_pred cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 230 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 230 d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
|+||||||||++++++|+||+.|+.+|+++.+++++++..++.||++|||++.|.+++.+++++++++|++.++|||||+
T Consensus 100 D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr 179 (358)
T KOG2335|consen 100 DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTR 179 (358)
T ss_pred CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccc--cCCCCCcHHHHHHH
Q psy7343 310 DQRGMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--TGQTRPAWELASEY 386 (487)
Q Consensus 310 ~~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf--~~~~~~~~~~~~~~ 386 (487)
.++|..+++++|+.|+.|++.+. +||++||+|.+.+|+.++++.+|+||||+|||+|.||++| .+...+.|+++.+|
T Consensus 180 ~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~ 259 (358)
T KOG2335|consen 180 EQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEY 259 (358)
T ss_pred HhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhccCCCCCCHHHHHHHH
Confidence 99988899999999999999997 9999999999999999999889999999999999999999 77788899999999
Q ss_pred HHHHHHcChh--HHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7343 387 LDLVAQYPVR--LQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR 441 (487)
Q Consensus 387 l~~~~~~~~~--~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~ 441 (487)
+++..+++.. ...+|.|++++++.++. ....+|..+...++.+.+.++++++.
T Consensus 260 l~~~~e~~g~~~~~~~~~Hl~~m~~~~~~--~~~~~r~~~~~~~~~~~~~~~l~~~~ 314 (358)
T KOG2335|consen 260 LDIAREFGGLSSFSLIRHHLFKMLRPLLS--IHQDLRRDLAALNSCESVIDFLEELV 314 (358)
T ss_pred HHHHHHcCCCchhhHHHHHHHHHHHHHHh--hhHHHHHHHhhccchhhHHHHHHHHH
Confidence 9999999743 88999999999987654 44578999988887777777777443
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=444.88 Aligned_cols=291 Identities=38% Similarity=0.586 Sum_probs=254.2
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+++++||||+|+||+|||+++++||+ |++|||||++++++++.+++...+...+
T Consensus 10 ~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~------------------------- 64 (323)
T COG0042 10 RNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELE------------------------- 64 (323)
T ss_pred cCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCC-------------------------
Confidence 78999999999999999999999999 9999999999999876654433322211
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN 235 (487)
.+.|++|||+|+||+.+.++|+++++. +|+||||
T Consensus 65 ---------------------------------------------~e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN 99 (323)
T COG0042 65 ---------------------------------------------EERPVAVQLGGSDPELLAEAAKIAEELGADIIDLN 99 (323)
T ss_pred ---------------------------------------------CCCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeee
Confidence 245677888888999999999999887 7999999
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeeccccccc--HHHHHHHHHHcCCcEEEEEccccCCC
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQR 312 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~--~~e~a~~le~~G~d~I~VhgRt~~~~ 312 (487)
||||+..+.+++.|+.|+.+|+++.+++++++++++ +||++|+|+|+|..+ ..+++++++++|++.++|||||+.++
T Consensus 100 ~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~ 179 (323)
T COG0042 100 CGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQG 179 (323)
T ss_pred CCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhc
Confidence 999998878888899999999999999999999995 999999999998775 88999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCC--------CCCc----
Q psy7343 313 GMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ--------TRPA---- 379 (487)
Q Consensus 313 g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~--------~~~~---- 379 (487)
|.++++|+.|+++++.++ +|||+||||.|.+|+.++++.+|||+||+|||++.|||+|.++ .++.
T Consensus 180 --y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~ 257 (323)
T COG0042 180 --YLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEV 257 (323)
T ss_pred --CCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHH
Confidence 889999999999999998 9999999999999999999999999999999999999998852 1122
Q ss_pred HHHHHHHHHHHHHcC--hhHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy7343 380 WELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443 (487)
Q Consensus 380 ~~~~~~~l~~~~~~~--~~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~ 443 (487)
.+.+.+|++.+.++. ..+..+|+|+.+|++ +++++.++|+.+.+..+..++.++++.+...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~r~h~~~~~~---~~~~a~~~r~~~~~~~~~~~~~~~l~~~~~~ 320 (323)
T COG0042 258 LDILREHLELLLEYYGKKGLRRLRKHLGYYLK---GLPGARELRRALNKAEDGAEVRRALEAVFEE 320 (323)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---cCccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 345667777776665 577889999988765 5779999999999999999998888887654
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=414.69 Aligned_cols=287 Identities=29% Similarity=0.408 Sum_probs=245.2
Q ss_pred ccccccccCCCchHHHHHHHHhC-CccceeccccchhhhcChhHHHHH---Hh---cCCCCCCeeeeeccCCHHHHHHHH
Q psy7343 150 RFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEI---LM---STPEDRPLIIQFCGNDSKNLTEAA 222 (487)
Q Consensus 150 ~~~lApma~~td~~fr~i~~~~G-a~l~~t~~v~~~~Ll~~~~~~~~~---l~---~~~~~~Pv~Vqi~g~d~~~~~~aa 222 (487)
++++|||+|+||.+||.+++++| +++++||||++.++..+.+....+ +. ..+.+.|+++||+|++++.+.++|
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 57899999999999999999998 799999999988877765544322 22 445679999999999999999999
Q ss_pred HhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeeccccc-ccHHHHHHHHHHcC
Q psy7343 223 KLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDV-NKTVEYARMLERAG 298 (487)
Q Consensus 223 ~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~-~~~~e~a~~le~~G 298 (487)
+++++. +|+||||||||+..+.+.+.|+.|+++++++.++++++++++ ++||++|+|+|++. ++..++++.++++|
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~G 161 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAG 161 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcC
Confidence 988876 999999999998755555568899999999999999999988 49999999998754 45789999999999
Q ss_pred CcEEEEEccccCCCCCCCCCC-CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC-
Q psy7343 299 CQLLAVHGRTVDQRGMNTGLA-SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT- 376 (487)
Q Consensus 299 ~d~I~VhgRt~~~~g~~~g~~-~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~- 376 (487)
+|.|+||+||+.+. |+|++ +|+.++++++.+++|||+||||.|++|++++++.+|||+||||||+++|||+|+++.
T Consensus 162 vd~i~Vh~Rt~~~~--y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~ 239 (312)
T PRK10550 162 ATELVVHGRTKEDG--YRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKY 239 (312)
T ss_pred CCEEEECCCCCccC--CCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhc
Confidence 99999999998775 88875 999999999999999999999999999999998899999999999999999999753
Q ss_pred ---CCcH----HHHHHHHHHHHHc-C--hhHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7343 377 ---RPAW----ELASEYLDLVAQY-P--VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR 441 (487)
Q Consensus 377 ---~~~~----~~~~~~l~~~~~~-~--~~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~ 441 (487)
.+.+ +.+.+|+++..++ + ..+..+|+|+.+|.+ ++++++++|+++.+++|.+|+.++++++.
T Consensus 240 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~---~~~~~~~~r~~i~~~~~~~e~~~~~~~~~ 311 (312)
T PRK10550 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLGYLRK---EYDEATELFQEIRALNNSPDIARAIQAID 311 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh---cCCcHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 2233 2445666654443 2 235678999887655 67899999999999999999999998763
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=416.01 Aligned_cols=282 Identities=40% Similarity=0.645 Sum_probs=218.9
Q ss_pred ccccccCCCchHHHHHHHHhCCc-cceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-C
Q psy7343 152 ILAPMVDASELPWRLLSRRYGSH-LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-C 229 (487)
Q Consensus 152 ~lApma~~td~~fr~i~~~~Ga~-l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~ 229 (487)
++|||+++||.+||.+++.+|++ +++|||++++.+++..++....+...+.+.|+++||+|+|++.+.++|+++.+. +
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~ 80 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGF 80 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCC
Confidence 47999999999999999999997 999999999999998888888888888889999999999999999999999994 9
Q ss_pred cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc--cccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 230 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 230 d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
|+||||||||+..+.++++|+.|+.+|+.+.++++++++.+++||++|+|++++ .+++.++++.++++|+++|+||||
T Consensus 81 ~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 81 DGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGR 160 (309)
T ss_dssp SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS
T ss_pred cEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecC
Confidence 999999999998777777899999999999999999999999999999999987 567899999999999999999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccC---C----CCCc-
Q psy7343 308 TVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG---Q----TRPA- 379 (487)
Q Consensus 308 t~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~---~----~~~~- 379 (487)
|+.|. |.|+++|+.++++++.+++|||+||||.|.+|+.++++.+||||||||||++.|||+|.+ . ..+.
T Consensus 161 t~~q~--~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~ 238 (309)
T PF01207_consen 161 TRKQR--YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFP 238 (309)
T ss_dssp -TTCC--CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S-
T ss_pred chhhc--CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCC
Confidence 99998 899999999999999999999999999999999999988899999999999999999983 2 1111
Q ss_pred -----HHHHHHHHHHHHH-c--ChhHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHH
Q psy7343 380 -----WELASEYLDLVAQ-Y--PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVD 438 (487)
Q Consensus 380 -----~~~~~~~l~~~~~-~--~~~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~ 438 (487)
.+.+.+|++.+.+ + ...+..+++|+.+|+ .++++++++|+.+.++++.+++.+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~---~~~~~~~~~r~~l~~~~~~~e~~~~l~ 302 (309)
T PF01207_consen 239 PIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYF---KGFPGARKFRRELNKCKTLEEFLELLE 302 (309)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCT---TTSTTHHHHHHHHCCH-SHHHHHHHH-
T ss_pred chhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH---ccCCcHHHHHHHHHhhCCHHHHhhhhc
Confidence 2344555554433 3 234556666665544 357899999999999999999999988
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=408.23 Aligned_cols=290 Identities=27% Similarity=0.366 Sum_probs=251.1
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEP 227 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~ 227 (487)
+.++++|||+++||.+||.+++++|+++++|||+++..+....++....+...+.+.|+++|++|++++++.++|+++++
T Consensus 9 ~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~aa~~~~~ 88 (321)
T PRK10415 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVE 88 (321)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999988766555554444444556899999999999999999998766
Q ss_pred c-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc--cHHHHHHHHHHcCCcEEEE
Q psy7343 228 H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 228 ~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~--~~~e~a~~le~~G~d~I~V 304 (487)
. +|+||||+|||+..+.+.+.|+.+++||+++.++++++++++++||++|+|.|++.+ +..++++.++++|+|+|+|
T Consensus 89 ~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~v 168 (321)
T PRK10415 89 SGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTI 168 (321)
T ss_pred CCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEE
Confidence 5 899999999999654455569999999999999999999999999999999998654 5789999999999999999
Q ss_pred EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC--------
Q psy7343 305 HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT-------- 376 (487)
Q Consensus 305 hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~-------- 376 (487)
|||++.+. +.|.++|+.++++++.+++|||+||||.|++|++++++.+|||+||+|||++.|||+|+++.
T Consensus 169 h~rt~~~~--~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~ 246 (321)
T PRK10415 169 HGRTRACL--FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 (321)
T ss_pred ecCccccc--cCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCC
Confidence 99998775 88999999999999999999999999999999999998899999999999999999997641
Q ss_pred --CCcH----HHHHHHHHHHHHc-Ch--hHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy7343 377 --RPAW----ELASEYLDLVAQY-PV--RLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRE 442 (487)
Q Consensus 377 --~~~~----~~~~~~l~~~~~~-~~--~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~ 442 (487)
.+.+ +.+.+|++.+.+| ++ .+..+|+|+.||++ ++++++++|+++.+++|.+|+.++++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 318 (321)
T PRK10415 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ---EHAPNDQFRRTFNAIEDASEQLEALEAYFE 318 (321)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHh---cCCchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1223 4556677666554 43 46789999988765 678999999999999999999999998775
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-50 Score=404.28 Aligned_cols=284 Identities=26% Similarity=0.430 Sum_probs=238.9
Q ss_pred ccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc
Q psy7343 150 RFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH 228 (487)
Q Consensus 150 ~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~ 228 (487)
++++|||+|+||.+||.+++.+|+ ++++|||+++.+++++..+ ..+...+.+.|+++||+|+|++.+.++|+.+++.
T Consensus 2 ~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~ 79 (318)
T TIGR00742 2 RFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAEKR 79 (318)
T ss_pred CEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHHhC
Confidence 678999999999999999999998 9999999999999887655 4677778889999999999999999999999876
Q ss_pred -CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccc----ccHHHHHHHHHHcCCcEEE
Q psy7343 229 -CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV----NKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 229 -~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~----~~~~e~a~~le~~G~d~I~ 303 (487)
+|+||||||||+....++++|+.|+++|+++.++++++++++++||++|+|++++. ++..++++.++++|++.|+
T Consensus 80 g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~it 159 (318)
T TIGR00742 80 GYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFI 159 (318)
T ss_pred CCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEE
Confidence 89999999999987778888999999999999999999999999999999998754 3567889999999999999
Q ss_pred EEccccCCCCCCCCC-------CCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 304 VHGRTVDQRGMNTGL-------ASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 304 VhgRt~~~~g~~~g~-------~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
|||||+..+ +|+|. ++|+.++++++.+ ++|||+||||.|.+|+.++++ |||+||||||++.|||+|.++
T Consensus 160 vHgRt~~~q-g~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~ 236 (318)
T TIGR00742 160 VHARKAWLS-GLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANV 236 (318)
T ss_pred EeCCchhhc-CCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHH
Confidence 999997332 25544 4899999999988 899999999999999999993 899999999999999999864
Q ss_pred C----------CCcHHHHHHHHHHH---HHcChhHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCH-HHHHHHHHHHH
Q psy7343 376 T----------RPAWELASEYLDLV---AQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHI-KDLRKAVDMLR 441 (487)
Q Consensus 376 ~----------~~~~~~~~~~l~~~---~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~-~~~~~~~~~~~ 441 (487)
. ++..+.+..+++++ ..+...+..+|+|+.+|++ ++++++++|+++.++.+- .+..+++++..
T Consensus 237 ~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~---g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 313 (318)
T TIGR00742 237 DREIFNETDEILTRKEIVEQMLPYIEEYLSQGLSLNHITRHLLGLFQ---GKPGAKQWRRYLSENAPKAGAGIEVLETAL 313 (318)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHc---cCCCHHHHHHHHHhcccCCCCcHHHHHHHH
Confidence 2 12234444444443 3334567899999988765 678999999999886543 24445555544
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-47 Score=383.92 Aligned_cols=290 Identities=35% Similarity=0.543 Sum_probs=252.6
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEP 227 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~ 227 (487)
..|+++|||+++||.+||.+++++|+++++|||+++..+..+.+.....+...+.+.|+++||.|++++++.++|+++++
T Consensus 7 ~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~ 86 (319)
T TIGR00737 7 KSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAKINEE 86 (319)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999999999988777777777777788999999999999999999999988
Q ss_pred c-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc--cHHHHHHHHHHcCCcEEEE
Q psy7343 228 H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 228 ~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~--~~~e~a~~le~~G~d~I~V 304 (487)
+ +|+||||+|||........+|+.++++++++.++++++++.+++||++|+|++++.. +..++++.+++.|+|+|+|
T Consensus 87 ~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~v 166 (319)
T TIGR00737 87 LGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL 166 (319)
T ss_pred CCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEE
Confidence 7 999999999997544444456778899999999999999999999999999987543 5789999999999999999
Q ss_pred EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC--------
Q psy7343 305 HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT-------- 376 (487)
Q Consensus 305 hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~-------- 376 (487)
|+|+..+. +.|+++|+.++++++.+++||++||||.|++|+.++++.+|||+||+||+++.|||+|.++.
T Consensus 167 h~r~~~~~--~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~ 244 (319)
T TIGR00737 167 HGRTRAQG--YSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKY 244 (319)
T ss_pred Eccccccc--CCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCC
Confidence 99987654 78889999999999999999999999999999999998899999999999999999997541
Q ss_pred --CCc----HHHHHHHHHHHHH-cCh--hHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy7343 377 --RPA----WELASEYLDLVAQ-YPV--RLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRE 442 (487)
Q Consensus 377 --~~~----~~~~~~~l~~~~~-~~~--~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~ 442 (487)
.+. .+.+.+|++.+.+ |+. .+..+|+|+.+|++ ++++++++|+++.+++|++++.++++++.+
T Consensus 245 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 245 KPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLK---GFPGNAALRQTLNHASSFQEVKQLLDDFFE 316 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh---cCCcHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 112 2456677776654 443 46788999877664 578999999999999999999999998764
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-46 Score=378.48 Aligned_cols=276 Identities=29% Similarity=0.475 Sum_probs=235.3
Q ss_pred CCCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhh
Q psy7343 147 GSPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLA 225 (487)
Q Consensus 147 g~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~ 225 (487)
+.+++++|||+|+||.+||.+++.+|+ ++++|||+++.+++++. ....+...+.+.|+++||+|+|++.+.++|+++
T Consensus 9 ~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~ 86 (333)
T PRK11815 9 PSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAEAAKLA 86 (333)
T ss_pred CCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHH
Confidence 467899999999999999999999997 89999999999998875 456677777889999999999999999999999
Q ss_pred CCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc----cHHHHHHHHHHcCCc
Q psy7343 226 EPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN----KTVEYARMLERAGCQ 300 (487)
Q Consensus 226 ~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~----~~~e~a~~le~~G~d 300 (487)
+++ +|+||||+|||..+.+++++|+.+++|++++.++++++++++++||++|+|++++.. +..++++.++++|+|
T Consensus 87 ~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d 166 (333)
T PRK11815 87 EDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCD 166 (333)
T ss_pred HhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCC
Confidence 887 899999999999888888899999999999999999999999999999999986542 467889999999999
Q ss_pred EEEEEccccCCCCCCC-------CCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 301 LLAVHGRTVDQRGMNT-------GLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 301 ~I~VhgRt~~~~g~~~-------g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
+|+||+|+....+ +. ++++|+.++++++.+ ++|||+||||.|++|+.++++ +||+||||||++.|||+|
T Consensus 167 ~i~vh~Rt~~~~g-~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aDgVmIGRa~l~nP~~~ 243 (333)
T PRK11815 167 TFIVHARKAWLKG-LSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYLL 243 (333)
T ss_pred EEEEcCCchhhcC-CCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCCEEEEcHHHHhCCHHH
Confidence 9999999863222 44 347899999999986 999999999999999999994 699999999999999999
Q ss_pred cCCC---------CCcH-HHHHHHHHHH---HHcChhHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCH
Q psy7343 373 TGQT---------RPAW-ELASEYLDLV---AQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHI 430 (487)
Q Consensus 373 ~~~~---------~~~~-~~~~~~l~~~---~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~ 430 (487)
+++. .+.+ +.+..+++++ ..++..+..+|+|+.+|++ ++++++++|+++.+..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~---~~~~~~~~r~~~~~~~~~ 311 (333)
T PRK11815 244 AEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQGGRLNHITRHMLGLFQ---GLPGARAWRRYLSENAHK 311 (333)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHc---CCCCHHHHHHHHHhhccc
Confidence 8642 1223 3444444443 3345567889999987765 678999999999887543
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=329.63 Aligned_cols=224 Identities=48% Similarity=0.800 Sum_probs=199.8
Q ss_pred ceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccccCC
Q psy7343 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDA 159 (487)
Q Consensus 80 ~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma~~ 159 (487)
+++||||+|+||+|||++|++||+|++||||++++.++..++.....+
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-------------------------------- 48 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLL-------------------------------- 48 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhh--------------------------------
Confidence 478999999999999999999999999999999999876654330000
Q ss_pred CchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCC
Q psy7343 160 SELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGC 238 (487)
Q Consensus 160 td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~Gc 238 (487)
.....+.|+++||.|++++++.++|++++++ +|+||||+||
T Consensus 49 --------------------------------------~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~ 90 (231)
T cd02801 49 --------------------------------------TRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGC 90 (231)
T ss_pred --------------------------------------ccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0112357899999998999999999999885 9999999999
Q ss_pred CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc-cHHHHHHHHHHcCCcEEEEEccccCCCCCCCC
Q psy7343 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317 (487)
Q Consensus 239 P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~-~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g 317 (487)
|..+.+++.+|+.+.++++.+.++++++++.+++||++|+|.+++.. +..++++.+++.|+|.|+||+|+..+. +.+
T Consensus 91 p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~--~~~ 168 (231)
T cd02801 91 PSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQR--YSG 168 (231)
T ss_pred CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHc--CCC
Confidence 99999999999999999999999999999999999999999998776 889999999999999999999987663 556
Q ss_pred CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+.+|+.++++++.+++||++||||.|++|+.++++.+|||+||+||+++.||++|+++
T Consensus 169 ~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~ 226 (231)
T cd02801 169 PADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREI 226 (231)
T ss_pred CCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhh
Confidence 7899999999999999999999999999999999777999999999999999999865
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >KOG2333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=311.10 Aligned_cols=258 Identities=23% Similarity=0.367 Sum_probs=206.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMV 157 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma 157 (487)
+.+++|||+..++|+|||+||+++|||++|.||..+..|+++....+.++..+..|.-++||+
T Consensus 264 r~K~~LaPLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQl----------------- 326 (614)
T KOG2333|consen 264 RDKKYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQL----------------- 326 (614)
T ss_pred ccceeeccccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEe-----------------
Confidence 468999999999999999999999999999999999999888877777777666666666664
Q ss_pred CCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCC-c-CcEEEee
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEP-H-CDGIDIN 235 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~-~-~d~IdiN 235 (487)
.|+.++....+|+.+.+ . +|.||||
T Consensus 327 -----------------------------------------------------ag~~pdt~~kaaq~i~e~~~VDFIDlN 353 (614)
T KOG2333|consen 327 -----------------------------------------------------AGSKPDTAAKAAQVIAETCDVDFIDLN 353 (614)
T ss_pred -----------------------------------------------------ccCChHHHHHHHHHHHhhcceeeeecc
Confidence 33344455555655544 3 8999999
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeeccc--ccccHHHHHHHHH-HcCCcEEEEEccccCC
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQ--DVNKTVEYARMLE-RAGCQLLAVHGRTVDQ 311 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~--d~~~~~e~a~~le-~~G~d~I~VhgRt~~~ 311 (487)
+|||...+.+-+.|++|+++|..+.++++++...+ .+|++||+|.|. +..-..++...+. +.|+++|++|||.++|
T Consensus 354 ~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQ 433 (614)
T KOG2333|consen 354 MGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQ 433 (614)
T ss_pred CCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhh
Confidence 99998766555569999999999999999888766 469999999974 3345667777776 8999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcC-CcEEEeccccccCcccccCCCCC---------c
Q psy7343 312 RGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTG-VAGVMTAEGNLYNPALFTGQTRP---------A 379 (487)
Q Consensus 312 ~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~G-ad~VmiGRa~l~~P~lf~~~~~~---------~ 379 (487)
+ |+..++|++|.++.+.+ .+|+|+||||.|++|..+-+...+ +|+||||||+|-.||||.+++.. .
T Consensus 434 R--YTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSteR 511 (614)
T KOG2333|consen 434 R--YTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTER 511 (614)
T ss_pred h--hhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCCccchHH
Confidence 9 99999999999998876 499999999999999887775555 99999999999999999988531 2
Q ss_pred HHHHHHHHHHHHHc-C---hhHHHHHHHHHHH
Q psy7343 380 WELASEYLDLVAQY-P---VRLQYARGHVFNM 407 (487)
Q Consensus 380 ~~~~~~~l~~~~~~-~---~~~~~~r~~l~~~ 407 (487)
.++++.|-++--+| | .++...|+++..+
T Consensus 512 ldiL~df~nyGLeHWGSDt~GVetTRRFlLE~ 543 (614)
T KOG2333|consen 512 LDILKDFCNYGLEHWGSDTKGVETTRRFLLEF 543 (614)
T ss_pred HHHHHHHHhhhhhhcCCccccHHHHHHHHHHH
Confidence 34555555553333 3 2456667766544
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=281.07 Aligned_cols=213 Identities=20% Similarity=0.251 Sum_probs=169.6
Q ss_pred ccccccccCCCchHHHH-HHHHhCCccc------eeccccchhhhc--------C--hhHHHHHHh-cCCCCCCeeeeec
Q psy7343 150 RFILAPMVDASELPWRL-LSRRYGSHLC------YTPMVSAHQFIA--------D--KKLRQEILM-STPEDRPLIIQFC 211 (487)
Q Consensus 150 ~~~lApma~~td~~fr~-i~~~~Ga~l~------~t~~v~~~~Ll~--------~--~~~~~~~l~-~~~~~~Pv~Vqi~ 211 (487)
|+++|||+|+||.+|+. ++..+|+++. .+.|..+..+.. + .+...+.+. ....+.|+++|++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p~~vqi~ 80 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVR 80 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCeEEEEec
Confidence 57899999999999997 6666665433 333333222221 1 011222222 1223569999999
Q ss_pred cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHH
Q psy7343 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a 291 (487)
|++++.+.++++.+++..++||||+|||+......+.|+.|+.||+.+.++++++++ .++||++|+|.+++ .+..+++
T Consensus 81 g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~-~~~~~la 158 (233)
T cd02911 81 SSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD-VDDEELA 158 (233)
T ss_pred CCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-cCHHHHH
Confidence 999999999999998888999999999997555555699999999999999999997 59999999999988 7899999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+.++++|+|.|++ ++..+. +.++|+.+++++ +++|||+||||.|.+|+.+++ ++|||+||+||+ .|||+
T Consensus 159 ~~l~~aG~d~ihv--~~~~~g----~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l-~~GaD~VmiGR~--~~p~~ 227 (233)
T cd02911 159 RLIEKAGADIIHV--DAMDPG----NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMF-SYGADMVSVARA--SLPEN 227 (233)
T ss_pred HHHHHhCCCEEEE--CcCCCC----CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHH-HcCCCEEEEcCC--CCchH
Confidence 9999999998755 432221 367899999987 789999999999999999999 489999999999 99999
Q ss_pred ccCC
Q psy7343 372 FTGQ 375 (487)
Q Consensus 372 f~~~ 375 (487)
|.++
T Consensus 228 ~~~~ 231 (233)
T cd02911 228 IEWL 231 (233)
T ss_pred HHHh
Confidence 9864
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >KOG2334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=271.35 Aligned_cols=265 Identities=34% Similarity=0.531 Sum_probs=221.7
Q ss_pred chhhhhcCCCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCC
Q psy7343 70 SDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSP 149 (487)
Q Consensus 70 ~~~~~~~~~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~ 149 (487)
+-+| .++++||||++++++|.|+|+-+||||++|||.|....|+..-++.+. ..+ .-
T Consensus 6 ~l~y----~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~Ne-----------alg--------tI 62 (477)
T KOG2334|consen 6 SLFY----RNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENE-----------ALG--------TI 62 (477)
T ss_pred hhhh----cCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccccc-----------ccc--------ce
Confidence 3566 899999999999999999999999999999999999888765443222 111 00
Q ss_pred ccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCC-CCCCeeeeeccCCHHHHHHHHHhhCCc
Q psy7343 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP-EDRPLIIQFCGNDSKNLTEAAKLAEPH 228 (487)
Q Consensus 150 ~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~-~~~Pv~Vqi~g~d~~~~~~aa~~~~~~ 228 (487)
. +..|-. +...|| .++ +...++.|+..++++-..++|+++.+.
T Consensus 63 D-fv~p~~--~~vvfr---------------------------------~~~~e~~rlilQ~gT~sa~lA~e~A~lv~nD 106 (477)
T KOG2334|consen 63 D-FVDPSD--STVVFR---------------------------------TCPAENSRLILQIGTASAELALEAAKLVDND 106 (477)
T ss_pred e-eecCCc--ceEEEE---------------------------------echhhcCeEEEEecCCcHHHHHHHHHHhhcc
Confidence 0 011100 001111 111 134688999999999999999999998
Q ss_pred CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 229 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 229 ~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
..+||+|||||.....|++.|+.++.+++.+..|+..+.+...+||++|+|+..+.+++.++.+.+..+|+..|.||+||
T Consensus 107 vsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt 186 (477)
T KOG2334|consen 107 VSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRT 186 (477)
T ss_pred cccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCC---HHHHHHHHHhcCCcEEEeccccccCcccccCCCCCc-HHHH
Q psy7343 309 VDQRGMNTGLASWEHITAVRKALT-IPVIANGNIQC---LADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA-WELA 383 (487)
Q Consensus 309 ~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s---~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~-~~~~ 383 (487)
+..+ ...+++.+.++++...++ +|||+||++.+ +.|+....+.+|+++||++|++..||.+|......+ .+.+
T Consensus 187 ~d~r--~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~eG~~~~~~~~ 264 (477)
T KOG2334|consen 187 RDER--NQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFREEGCLSEKEVI 264 (477)
T ss_pred cccC--CCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeeecCCchHHHHH
Confidence 9887 556788899999999986 99999999999 778888888899999999999999999999776544 4678
Q ss_pred HHHHHHHHHcCh
Q psy7343 384 SEYLDLVAQYPV 395 (487)
Q Consensus 384 ~~~l~~~~~~~~ 395 (487)
++|+.++.+|..
T Consensus 265 ~~fl~~a~~~dn 276 (477)
T KOG2334|consen 265 REFLRLAVQYDN 276 (477)
T ss_pred HHHHHHHHHHhh
Confidence 899999988853
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=246.73 Aligned_cols=161 Identities=18% Similarity=0.152 Sum_probs=144.9
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
....|+++|+++.+++++.++++.+++.+|+||||+|||+....+.+.|+.|+.||+.+.++++++++ .++||++|+|+
T Consensus 65 ~~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~ 143 (231)
T TIGR00736 65 ESRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRG 143 (231)
T ss_pred hhcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCC
Confidence 35679999999999999999999999899999999999998666666799999999999999999995 58999999999
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+++..+..++++.++++|+|+|+||++... .+.++|+.++++++.++ +|||+||||+|.+|+.++++ +|||+|
T Consensus 144 ~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g-----~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~-~GAd~V 217 (231)
T TIGR00736 144 NCIPLDELIDALNLVDDGFDGIHVDAMYPG-----KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK-AGADFV 217 (231)
T ss_pred CCCcchHHHHHHHHHHcCCCEEEEeeCCCC-----CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH-hCCCeE
Confidence 887678899999999999999999865321 12279999999999995 99999999999999999995 999999
Q ss_pred EeccccccC
Q psy7343 360 MTAEGNLYN 368 (487)
Q Consensus 360 miGRa~l~~ 368 (487)
|+||+++.+
T Consensus 218 mvgR~~l~~ 226 (231)
T TIGR00736 218 SVARAILKG 226 (231)
T ss_pred EEcHhhccC
Confidence 999999977
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=248.54 Aligned_cols=239 Identities=23% Similarity=0.310 Sum_probs=185.6
Q ss_pred CCcccccc-ccCCCchHHHHHHHHhCCcccee---------------------ccccchhhhcC-hhHHHHHHh--cCCC
Q psy7343 148 SPRFILAP-MVDASELPWRLLSRRYGSHLCYT---------------------PMVSAHQFIAD-KKLRQEILM--STPE 202 (487)
Q Consensus 148 ~~~~~lAp-ma~~td~~fr~i~~~~Ga~l~~t---------------------~~v~~~~Ll~~-~~~~~~~l~--~~~~ 202 (487)
.+|+++|| +.+.++..++.++.. |++++.+ .|++..++... .+...+.+. ....
T Consensus 11 ~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~ 89 (300)
T TIGR01037 11 KNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEF 89 (300)
T ss_pred CCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccC
Confidence 56899999 468888889887766 8887777 34444444442 233233332 2233
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc---CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH---CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~---~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
+.|+++||.|.+++++.++++.++++ +|+||||+|||+.. + +|..+..+++.+.++++++++.+++||++|++
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~---~-~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~ 165 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK---G-GGIAIGQDPELSADVVKAVKDKTDVPVFAKLS 165 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC---C-CccccccCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 56999999999999999999999853 79999999999852 3 47778889999999999999999999999997
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccC--------------CCCCCCCCCCH----HHHHHHHhhCCCcEEEcCCC
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVD--------------QRGMNTGLASW----EHITAVRKALTIPVIANGNI 341 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~--------------~~g~~~g~~~~----~~i~~i~~~~~iPVi~nGgI 341 (487)
. +.++..++++.++++|+|+|++|+++.. ..++++|++.| +.++++++.+++|||++|||
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI 243 (300)
T TIGR01037 166 P--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGI 243 (300)
T ss_pred C--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4 4457889999999999999999864321 12356777655 78899999999999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHH
Q psy7343 342 QCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP-VRLQYAR 401 (487)
Q Consensus 342 ~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r 401 (487)
.|++|+.+++ .+|||+||+||+++.||++|.+ +.++..+++++.+ ..+.+++
T Consensus 244 ~s~~da~~~l-~~GAd~V~igr~~l~~p~~~~~-------i~~~l~~~~~~~g~~~~~e~~ 296 (300)
T TIGR01037 244 TSFEDALEFL-MAGASAVQVGTAVYYRGFAFKK-------IIEGLIAFLKAEGFTSIEELI 296 (300)
T ss_pred CCHHHHHHHH-HcCCCceeecHHHhcCchHHHH-------HHHHHHHHHHHcCCCCHHHHh
Confidence 9999999999 5899999999999999999873 4455555666554 2344443
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-31 Score=265.90 Aligned_cols=207 Identities=29% Similarity=0.479 Sum_probs=150.2
Q ss_pred EEecCCCCCCHHHHHHHHHcCCC-eEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccccC-C
Q psy7343 82 ILAPMVDASELPWRLLSRRYGSH-LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVD-A 159 (487)
Q Consensus 82 ~LAPMag~td~pFR~l~~~~Gad-l~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma~-~ 159 (487)
+||||+|+||+|||++|+++|++ ++|||||+++++++.+++....+...+.++|+++|++ |+.+..++.++. +
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-----g~~~~~~~~aa~~~ 75 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-----GNDPEDLAEAAEIV 75 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE------S-HHHHHHHHHHH
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-----eccHHHHHHHHHhh
Confidence 59999999999999999999997 9999999999999999999999999999999999985 344554444443 3
Q ss_pred CchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCC--HHHHHHHHHhhCCcCc
Q psy7343 160 SELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GND--SKNLTEAAKLAEPHCD 230 (487)
Q Consensus 160 td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d--~~~~~~aa~~~~~~~d 230 (487)
.+..+..|+.|+| ||.+++. |++|+++++.+.++++. ...+.||+||+| |.+ .+++.+.+++++++
T Consensus 76 ~~~~~~~IDlN~G---CP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~-- 150 (309)
T PF01207_consen 76 AELGFDGIDLNMG---CPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDA-- 150 (309)
T ss_dssp CCTT-SEEEEEE------SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHT--
T ss_pred hccCCcEEeccCC---CCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhc--
Confidence 4557778899999 9999886 88999999999998862 334689999999 655 67899999999988
Q ss_pred EEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 231 GIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 231 ~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
|+ ..+++|+|+..+. ..||+.+.+ +++.+++||++|+ |+.+..++.+.++.+|+|+||| ||
T Consensus 151 ------G~-~~i~vH~Rt~~q~~~~~a~w~~i~~----i~~~~~ipvi~NG----dI~s~~d~~~~~~~tg~dgvMi-gR 214 (309)
T PF01207_consen 151 ------GV-SAITVHGRTRKQRYKGPADWEAIAE----IKEALPIPVIANG----DIFSPEDAERMLEQTGADGVMI-GR 214 (309)
T ss_dssp ------T---EEEEECS-TTCCCTS---HHHHHH----CHHC-TSEEEEES----S--SHHHHHHHCCCH-SSEEEE-SH
T ss_pred ------cc-ceEEEecCchhhcCCcccchHHHHH----HhhcccceeEEcC----ccCCHHHHHHHHHhcCCcEEEE-ch
Confidence 66 6788888887765 456776665 5666789999998 9999999999999999999999 99
Q ss_pred ccCCCCC
Q psy7343 308 TVDQRGM 314 (487)
Q Consensus 308 t~~~~g~ 314 (487)
.....+|
T Consensus 215 gal~nP~ 221 (309)
T PF01207_consen 215 GALGNPW 221 (309)
T ss_dssp HHCC-CC
T ss_pred hhhhcCH
Confidence 7665543
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=254.71 Aligned_cols=205 Identities=20% Similarity=0.249 Sum_probs=155.0
Q ss_pred ceEEecCCCCCCHHHHHHHHHcC-CCeEEccceeccccccCcHHHH---HHhh---hCCCCCceeeeeccccCCCCCccc
Q psy7343 80 RFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQ---EILM---STPEDRPLIIQRTIFPRLGSPRFI 152 (487)
Q Consensus 80 ~~~LAPMag~td~pFR~l~~~~G-adl~~TEMi~a~~l~~~~~~~~---~~~~---~~~~e~p~~vQl~~~~~~g~~~~~ 152 (487)
+++||||+|+||+|||++|+++| +|++|||||+++++...++.+. .++. ..+.++|+++|++ |+.+..
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-----g~~p~~ 76 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-----GQYPQW 76 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-----cCCHHH
Confidence 68999999999999999999999 8999999999999988765553 2333 5677899999974 333433
Q ss_pred cccc-cCCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc----CCCCCCeeeeec-cCC-HHHHHHH
Q psy7343 153 LAPM-VDASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS----TPEDRPLIIQFC-GND-SKNLTEA 221 (487)
Q Consensus 153 lApm-a~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~----~~~~~Pv~Vqi~-g~d-~~~~~~a 221 (487)
++-. ..+.+.+|..++.|+| ||+++++ |++|+++++...++++. .+.+.||+||++ |.+ .+++.++
T Consensus 77 ~~~aA~~~~~~g~d~IdiN~G---CP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~ 153 (312)
T PRK10550 77 LAENAARAVELGSWGVDLNCG---CPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEI 153 (312)
T ss_pred HHHHHHHHHHcCCCEEEEeCC---CCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHH
Confidence 3322 2334456777888999 8888775 66899999998888852 233589999998 543 4557889
Q ss_pred HHhhCCc-CcEEEeecCCCcceeeccCccccc---c-CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHH
Q psy7343 222 AKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL---Q-DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER 296 (487)
Q Consensus 222 a~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l---~-~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~ 296 (487)
+++++++ .|.|.+|. |+..+. . .||+.+.+ +++.+++||++|+ |+.+..++.+.++.
T Consensus 154 a~~l~~~Gvd~i~Vh~----------Rt~~~~y~g~~~~~~~i~~----ik~~~~iPVi~nG----dI~t~~da~~~l~~ 215 (312)
T PRK10550 154 ADAVQQAGATELVVHG----------RTKEDGYRAEHINWQAIGE----IRQRLTIPVIANG----EIWDWQSAQQCMAI 215 (312)
T ss_pred HHHHHhcCCCEEEECC----------CCCccCCCCCcccHHHHHH----HHhhcCCcEEEeC----CcCCHHHHHHHHhc
Confidence 9999887 56666654 333222 1 26765555 5666789999998 88899999999999
Q ss_pred cCCcEEEEEccccCC
Q psy7343 297 AGCQLLAVHGRTVDQ 311 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~ 311 (487)
+|||+||| ||....
T Consensus 216 ~g~DgVmi-GRg~l~ 229 (312)
T PRK10550 216 TGCDAVMI-GRGALN 229 (312)
T ss_pred cCCCEEEE-cHHhHh
Confidence 99999999 996433
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-29 Score=251.12 Aligned_cols=208 Identities=19% Similarity=0.286 Sum_probs=152.1
Q ss_pred ceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccccC
Q psy7343 80 RFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVD 158 (487)
Q Consensus 80 ~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma~ 158 (487)
+++||||+|+||+|||.+|++||+ +++||||++++++++++++ .++.++++++|+++|+++ +.+..++..+.
T Consensus 2 ~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g-----~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGG-----SDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEcc-----CCHHHHHHHHH
Confidence 689999999999999999999998 9999999999999987765 577888999999999753 33433333332
Q ss_pred -CCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCCH----HHHHHHHHhhC
Q psy7343 159 -ASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GNDS----KNLTEAAKLAE 226 (487)
Q Consensus 159 -~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d~----~~~~~aa~~~~ 226 (487)
+.+.+|+.|+.|+| ||.+.+. |++|+++++.+.++++. ...+.||+||++ |.+. ++..++++.++
T Consensus 75 ~~~~~g~d~IDlN~G---CP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~ 151 (318)
T TIGR00742 75 IAEKRGYDEINLNVG---CPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVS 151 (318)
T ss_pred HHHhCCCCEEEEECC---CCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHH
Confidence 23445677888999 8888776 88999999999998863 334689999999 5432 45567788887
Q ss_pred Cc-CcEEEeecCCCcceeeccCcccc----ccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCc
Q psy7343 227 PH-CDGIDINIGCPQMVAKRGHYGAY----LQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300 (487)
Q Consensus 227 ~~-~d~IdiN~GcP~~i~~~gr~G~~----l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d 300 (487)
++ .+.|.+|..-.. ..+-.|.+ -..+|+.+.+ +++.+ ++||++|+ |+.+..++.+.++ |||
T Consensus 152 ~~G~~~itvHgRt~~---~qg~sg~~~~~~~~~~~~~i~~----vk~~~~~ipVi~NG----dI~s~~da~~~l~--g~d 218 (318)
T TIGR00742 152 GKGCQNFIVHARKAW---LSGLSPKENREIPPLRYERVYQ----LKKDFPHLTIEING----GIKNSEQIKQHLS--HVD 218 (318)
T ss_pred HcCCCEEEEeCCchh---hcCCCccccccCCchhHHHHHH----HHHhCCCCcEEEEC----CcCCHHHHHHHHh--CCC
Confidence 76 455544433210 00100110 0125665554 55555 79999998 8889999988885 899
Q ss_pred EEEEEccccCC
Q psy7343 301 LLAVHGRTVDQ 311 (487)
Q Consensus 301 ~I~VhgRt~~~ 311 (487)
+||| ||....
T Consensus 219 gVMi-gRgal~ 228 (318)
T TIGR00742 219 GVMV-GREAYE 228 (318)
T ss_pred EEEE-CHHHHh
Confidence 9999 996544
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-28 Score=247.18 Aligned_cols=207 Identities=23% Similarity=0.350 Sum_probs=157.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMV 157 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma 157 (487)
+++++||||+|+||+|||++|++||+|++||||++++.+...+.++...+.+.+++.|+++|++ |+.+..++-++
T Consensus 9 ~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-----g~~~~~~~~aa 83 (321)
T PRK10415 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-----GSDPKEMADAA 83 (321)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-----CCCHHHHHHHH
Confidence 5689999999999999999999999999999999999887776666666666677789999974 33343333333
Q ss_pred C-CCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHh--cCCCCCCeeeeec-cCCH--HHHHHHHHhhCC
Q psy7343 158 D-ASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILM--STPEDRPLIIQFC-GNDS--KNLTEAAKLAEP 227 (487)
Q Consensus 158 ~-~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~-g~d~--~~~~~aa~~~~~ 227 (487)
. +.+..+..++.|+| ||.+++. |++|+++++...++++ ....+.||++|++ |.+. .+..++++.+++
T Consensus 84 ~~~~~~g~d~IdlN~g---CP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~ 160 (321)
T PRK10415 84 RINVESGAQIIDINMG---CPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAED 160 (321)
T ss_pred HHHHHCCCCEEEEeCC---CCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHH
Confidence 2 23445667888999 8877654 7889999999998886 2334789999998 5443 367788888887
Q ss_pred c-CcEEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 228 H-CDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 228 ~-~d~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
. .|.|.+| +++..+. ..+|+.+.+ +++.+++||++++ |+.+..++.+.++.+|+|+||
T Consensus 161 ~G~d~i~vh----------~rt~~~~~~G~a~~~~i~~----ik~~~~iPVI~nG----gI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 161 CGIQALTIH----------GRTRACLFNGEAEYDSIRA----VKQKVSIPVIANG----DITDPLKARAVLDYTGADALM 222 (321)
T ss_pred hCCCEEEEe----------cCccccccCCCcChHHHHH----HHHhcCCcEEEeC----CCCCHHHHHHHHhccCCCEEE
Confidence 7 5555555 4433222 346765554 5667789999998 888999999999999999999
Q ss_pred EEccccCC
Q psy7343 304 VHGRTVDQ 311 (487)
Q Consensus 304 VhgRt~~~ 311 (487)
+ ||....
T Consensus 223 i-GR~~l~ 229 (321)
T PRK10415 223 I-GRAAQG 229 (321)
T ss_pred E-ChHhhc
Confidence 9 996543
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=229.77 Aligned_cols=192 Identities=24% Similarity=0.365 Sum_probs=158.5
Q ss_pred ceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccC-CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCcccccc
Q psy7343 176 CYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGN-DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 253 (487)
Q Consensus 176 ~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~-d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~ 253 (487)
..++|++...+....+...+..+..+ +.|+++|+.|. +++++.++++.+++. +|+||||+|||+....++ .|+.+.
T Consensus 73 ~n~e~~s~~~~~~~~~~~~~~~~~~~-~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~-~G~~l~ 150 (299)
T cd02940 73 NNIELISEKPLEYWLKEIRELKKDFP-DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERG-MGAAVG 150 (299)
T ss_pred cCCccccccCHHHHHHHHHHHHhhCC-CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCC-Cchhhc
Confidence 45567776655443333333333333 68999999997 999999999999875 899999999998744444 588888
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEE---------------------ccccCCC
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVH---------------------GRTVDQR 312 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vh---------------------gRt~~~~ 312 (487)
.|++.+.++++++++.+++||++|+|. +..+..++++.++++|+|+|+++ +|+. .
T Consensus 151 ~~~~~~~~iv~~v~~~~~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~--~ 226 (299)
T cd02940 151 QDPELVEEICRWVREAVKIPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTT--Y 226 (299)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCC--c
Confidence 999999999999999999999999976 44578899999999999999854 3433 3
Q ss_pred CCCCCCCC----HHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc-CcccccC
Q psy7343 313 GMNTGLAS----WEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPALFTG 374 (487)
Q Consensus 313 g~~~g~~~----~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~lf~~ 374 (487)
++++|++. |+.+.++++.+ ++|||++|||.|.+|+.+++ .+|||+||+||+++. .|.+|.+
T Consensus 227 gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l-~aGA~~V~i~ta~~~~g~~~~~~ 294 (299)
T cd02940 227 GGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFL-LLGASVVQVCTAVMNQGFTIVDD 294 (299)
T ss_pred CcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHH-HcCCChheEceeecccCCcHHHH
Confidence 45899887 89999999999 89999999999999999999 699999999999998 7988864
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=222.57 Aligned_cols=240 Identities=22% Similarity=0.269 Sum_probs=180.0
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcCh-----------------------hHHHHHHh-cCCCC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-----------------------KLRQEILM-STPED 203 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~-----------------------~~~~~~l~-~~~~~ 203 (487)
.+|+.+|.-...++..++.+....|++...+++++.+....++ .....+.+ ....+
T Consensus 10 ~nP~~~aag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~ 89 (296)
T cd04740 10 KNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFG 89 (296)
T ss_pred CCCCEECCCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCC
Confidence 4577776322225566777766656888888888744322121 11222222 13356
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
.|+++||++.+++++.++|++++++ +|+||||++||... ++ |.++..+++.+.++++++++.+++||++|++.
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~---~~-g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-- 163 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK---GG-GMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-- 163 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC---CC-cccccCCHHHHHHHHHHHHhccCCCEEEEeCC--
Confidence 8999999999999999999999888 99999999999742 22 66777899999999999999999999999854
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEcccc---------C-----CCCCCCCCCC----HHHHHHHHhhCCCcEEEcCCCCCH
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTV---------D-----QRGMNTGLAS----WEHITAVRKALTIPVIANGNIQCL 344 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~---------~-----~~g~~~g~~~----~~~i~~i~~~~~iPVi~nGgI~s~ 344 (487)
+.++..++++.++++|+|+|.+++++. . ..++++|++. ++.++++++.+++|||++|||.|+
T Consensus 164 ~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 164 NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 445788999999999999999865432 1 1145666653 588999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHH
Q psy7343 345 ADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP-VRLQYAR 401 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r 401 (487)
+|+.+++ ..|||+||+||+++.||++|.+ +.+...+++++.+ ..+..++
T Consensus 244 ~da~~~l-~~GAd~V~igra~l~~p~~~~~-------i~~~l~~~~~~~g~~~~~~~~ 293 (296)
T cd04740 244 EDALEFL-MAGASAVQVGTANFVDPEAFKE-------IIEGLEAYLDEEGIKSIEELV 293 (296)
T ss_pred HHHHHHH-HcCCCEEEEchhhhcChHHHHH-------HHHHHHHHHHHcCCCCHHHHh
Confidence 9999999 6899999999999999999873 3444455565554 2344443
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=212.71 Aligned_cols=179 Identities=27% Similarity=0.449 Sum_probs=149.2
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
.+.|+++||.|+++++|.++|++++++ +|+||||++||+. .+| |..+..+++.+.++++++++.+++||++|++
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~--~~g--g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNV--KHG--GMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCC--CCC--ccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 368999999999999999999999887 8999999999973 232 5667789999999999999999999999996
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccC--------------CCCCCCCCC----CHHHHHHHHhhCCCcEEEcCCC
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVD--------------QRGMNTGLA----SWEHITAVRKALTIPVIANGNI 341 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~--------------~~g~~~g~~----~~~~i~~i~~~~~iPVi~nGgI 341 (487)
. +.++..++++.++++|+|+|++++++.. ..++++|++ .++.++++++.+++|||++|||
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI 243 (301)
T PRK07259 166 P--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGI 243 (301)
T ss_pred C--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCC
Confidence 4 4457889999999999999998654321 123455543 5789999999999999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 342 QCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 342 ~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
.|++|+.+++ ..|||+||+||+++.||++|.+ +.++..+++++.+
T Consensus 244 ~~~~da~~~l-~aGAd~V~igr~ll~~P~~~~~-------i~~~l~~~~~~~g 288 (301)
T PRK07259 244 SSAEDAIEFI-MAGASAVQVGTANFYDPYAFPK-------IIEGLEAYLDKYG 288 (301)
T ss_pred CCHHHHHHHH-HcCCCceeEcHHHhcCcHHHHH-------HHHHHHHHHHHcC
Confidence 9999999999 5899999999999999999874 3444445666554
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-25 Score=228.81 Aligned_cols=208 Identities=21% Similarity=0.292 Sum_probs=150.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+++++||||+|+||+|||.+|+++|+ +++||||++++++++++ +..++..++.++|+++|+++ +.+..++..
T Consensus 10 ~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g-----~~p~~~~~a 82 (333)
T PRK11815 10 SRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGG-----SDPADLAEA 82 (333)
T ss_pred CCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeC-----CCHHHHHHH
Confidence 77899999999999999999999998 99999999999999876 56778888899999999853 333333322
Q ss_pred cC-CCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCC----HHHHHHHHHh
Q psy7343 157 VD-ASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GND----SKNLTEAAKL 224 (487)
Q Consensus 157 a~-~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d----~~~~~~aa~~ 224 (487)
+. +.+.+|..|+.|+| ||.+.+. |+.|+++++...++++. ...+.||+||++ +.+ .++..++++.
T Consensus 83 A~~~~~~g~d~IdlN~g---CP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~ 159 (333)
T PRK11815 83 AKLAEDWGYDEINLNVG---CPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDT 159 (333)
T ss_pred HHHHHhcCCCEEEEcCC---CCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHH
Confidence 22 23345666777888 8877665 77899999999888863 233689999997 322 3456778888
Q ss_pred hCCc-CcEEEeecCCCcceeeccCccc----cccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcC
Q psy7343 225 AEPH-CDGIDINIGCPQMVAKRGHYGA----YLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAG 298 (487)
Q Consensus 225 ~~~~-~d~IdiN~GcP~~i~~~gr~G~----~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G 298 (487)
++++ ++.|.+|..-.. ..+-.|. .-..+|+.+.+ +++.+ ++||++++ ++.+..++.+.++ |
T Consensus 160 l~~aG~d~i~vh~Rt~~---~~g~~~~~~~~~~~~~~~~i~~----v~~~~~~iPVI~nG----gI~s~eda~~~l~--~ 226 (333)
T PRK11815 160 VAEAGCDTFIVHARKAW---LKGLSPKENREIPPLDYDRVYR----LKRDFPHLTIEING----GIKTLEEAKEHLQ--H 226 (333)
T ss_pred HHHhCCCEEEEcCCchh---hcCCCccccccCCCcCHHHHHH----HHHhCCCCeEEEEC----CcCCHHHHHHHHh--c
Confidence 8776 566665532110 0110000 01235666554 55554 89999998 7778888888876 6
Q ss_pred CcEEEEEcccc
Q psy7343 299 CQLLAVHGRTV 309 (487)
Q Consensus 299 ~d~I~VhgRt~ 309 (487)
||+||| ||..
T Consensus 227 aDgVmI-GRa~ 236 (333)
T PRK11815 227 VDGVMI-GRAA 236 (333)
T ss_pred CCEEEE-cHHH
Confidence 999999 9954
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-25 Score=226.42 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=153.8
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMV 157 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma 157 (487)
+++++||||+|+||+|||.+|+++|+|++||||++++.+.+..++....+...+.++|+++|+++. ++..+.....
T Consensus 7 ~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~----~~~~~~~aa~ 82 (319)
T TIGR00737 7 KSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGS----DPDTMAEAAK 82 (319)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCC----CHHHHHHHHH
Confidence 668999999999999999999999999999999999999988888888888888999999998532 2222222222
Q ss_pred CCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCC--HHHHHHHHHhhCCc
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GND--SKNLTEAAKLAEPH 228 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d--~~~~~~aa~~~~~~ 228 (487)
.+.+.+|+.+..|+| ||++.+. |+.++++++...++++. ...+.||+||++ |.+ ..+..+.++.+++.
T Consensus 83 ~~~~~G~d~IelN~g---cP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~ 159 (319)
T TIGR00737 83 INEELGADIIDINMG---CPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA 159 (319)
T ss_pred HHHhCCCCEEEEECC---CCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh
Confidence 222334555666777 7766554 66788899988888862 334689999998 433 23567788888776
Q ss_pred -CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 229 -CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 229 -~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
.|.|.+|...+ .+++. ...+++ .++.+++.+++||++++ ++.+..++.+.++.+|+|+||+ ||
T Consensus 160 G~d~i~vh~r~~-----~~~~~--~~~~~~----~i~~i~~~~~ipvi~nG----gI~~~~da~~~l~~~gad~Vmi-gR 223 (319)
T TIGR00737 160 GAQAVTLHGRTR-----AQGYS--GEANWD----IIARVKQAVRIPVIGNG----DIFSPEDAKAMLETTGCDGVMI-GR 223 (319)
T ss_pred CCCEEEEEcccc-----cccCC--CchhHH----HHHHHHHcCCCcEEEeC----CCCCHHHHHHHHHhhCCCEEEE-Ch
Confidence 67777763221 11111 112444 45556777889999998 7888999999998999999999 88
Q ss_pred cc
Q psy7343 308 TV 309 (487)
Q Consensus 308 t~ 309 (487)
..
T Consensus 224 ~~ 225 (319)
T TIGR00737 224 GA 225 (319)
T ss_pred hh
Confidence 54
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=224.95 Aligned_cols=179 Identities=21% Similarity=0.377 Sum_probs=151.6
Q ss_pred CCCeeeeeccC-CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 203 DRPLIIQFCGN-DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~-d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
+.|+++||.|. +++++.++++.+++. +|+||||+|||++...++ .|+.+..+++.+.++++++++.+++||++|++.
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~-~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p 177 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERG-MGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP 177 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccC-CcccccCCHHHHHHHHHHHHhccCCcEEEEcCC
Confidence 57999999998 899999999999887 899999999998544444 578888999999999999999999999999975
Q ss_pred ccccccHHHHHHHHHHcCCcEEEE---------------------EccccCCCCCCCCCCC----HHHHHHHHhhC---C
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAV---------------------HGRTVDQRGMNTGLAS----WEHITAVRKAL---T 332 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~V---------------------hgRt~~~~g~~~g~~~----~~~i~~i~~~~---~ 332 (487)
+..+..++++.++++|+|+|++ |+|+. .++++|++. |+.++++++.+ +
T Consensus 178 --~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~--~gg~SG~a~~p~~l~~v~~~~~~~~~~~ 253 (420)
T PRK08318 178 --NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSS--HGGYCGPAVKPIALNMVAEIARDPETRG 253 (420)
T ss_pred --CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCC--cccccchhhhHHHHHHHHHHHhccccCC
Confidence 4556889999999999999983 33332 346899884 89999999987 8
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc-CcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
+|||++|||.|.+|+.+++ .+|||+||||||++. +|.++. ++.++..+++++++
T Consensus 254 ipIig~GGI~s~~da~e~i-~aGA~~Vqi~ta~~~~gp~ii~-------~I~~~L~~~l~~~g 308 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFI-LLGAGTVQVCTAAMQYGFRIVE-------DMISGLSHYMDEKG 308 (420)
T ss_pred CCEEeecCcCCHHHHHHHH-HhCCChheeeeeeccCCchhHH-------HHHHHHHHHHHHcC
Confidence 9999999999999999999 699999999999998 688876 34455555666654
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=212.73 Aligned_cols=162 Identities=22% Similarity=0.321 Sum_probs=137.3
Q ss_pred HHHHHHHHHhhCCc-CcEEEeec--C-------CCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINI--G-------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD- 283 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~--G-------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d- 283 (487)
.++|+++|++++++ ||+||||+ | +|..+.+++.||+.+.++.+++.+++++|+++++.++++++|++.+
T Consensus 140 i~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~ 219 (343)
T cd04734 140 IAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDE 219 (343)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhh
Confidence 36788999988877 99999999 4 5778889999999999999999999999999999889999998753
Q ss_pred -------cccHHHHHHHHHHcC-CcEEEEEccccCCC--------CCC-CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 284 -------VNKTVEYARMLERAG-CQLLAVHGRTVDQR--------GMN-TGLASWEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 284 -------~~~~~e~a~~le~~G-~d~I~VhgRt~~~~--------g~~-~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
.++..++++.++++| +|.|.||+++..+. ..+ ....+|+.++++++.+++||++||+|.|+++
T Consensus 220 ~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~ 299 (343)
T cd04734 220 DTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAE 299 (343)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHH
Confidence 246788999999998 89999975443221 011 1223578999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEeccccccCcccccCCC
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
+++++++++||+||+||+++.|||++++..
T Consensus 300 ~~~~l~~~~~D~V~~gR~~ladP~l~~k~~ 329 (343)
T cd04734 300 AEQALAAGHADMVGMTRAHIADPHLVAKAR 329 (343)
T ss_pred HHHHHHcCCCCeeeecHHhHhCccHHHHHH
Confidence 999998888999999999999999997653
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=208.03 Aligned_cols=168 Identities=26% Similarity=0.442 Sum_probs=145.0
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
.+.|+++||++++++++.++++.+++. +|+||||++||.... +..+..+++.+.++++++++.+++||++|++.
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 478999999999999999999999887 999999999997422 23356789999999999999999999999998
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccC--------------CCCCCCCCC----CHHHHHHHHhhC--CCcEEEcCC
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVD--------------QRGMNTGLA----SWEHITAVRKAL--TIPVIANGN 340 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~--------------~~g~~~g~~----~~~~i~~i~~~~--~iPVi~nGg 340 (487)
+.+.++..++++.++++|+|+|++|+++.. ..++++|.+ .++.++++++.+ ++|||++||
T Consensus 172 ~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GG 251 (289)
T cd02810 172 YFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGG 251 (289)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 777778899999999999999999987531 112344433 468899999998 899999999
Q ss_pred CCCHHHHHHHHHhcCCcEEEeccccccC-cccccCC
Q psy7343 341 IQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQ 375 (487)
Q Consensus 341 I~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~ 375 (487)
|.|++|+.+++ ..|||+||+||+++.| |++|.++
T Consensus 252 I~~~~da~~~l-~~GAd~V~vg~a~~~~GP~~~~~i 286 (289)
T cd02810 252 IDSGEDVLEML-MAGASAVQVATALMWDGPDVIRKI 286 (289)
T ss_pred CCCHHHHHHHH-HcCccHheEcHHHHhcCccHHHHH
Confidence 99999999999 5899999999999999 9999754
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=202.85 Aligned_cols=166 Identities=17% Similarity=0.273 Sum_probs=136.9
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCC----cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEE
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEP----HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK 277 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~----~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vK 277 (487)
.+.|+++||.+. ++++.++++.+++ .+|+||||++||+. .+ +..+..|++.+.++++++++.+++||++|
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~---~~--~~~~~~~~~~~~~i~~~v~~~~~iPv~vK 163 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNV---PG--KPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCC---CC--cccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 468999999998 9999998887766 37999999999973 12 22455789999999999999999999999
Q ss_pred eecccccccHHHHHHHHHHc--CCcEEEE----------Ec-ccc------CCCCCCCCCC----CHHHHHHHHhhC--C
Q psy7343 278 IRIYQDVNKTVEYARMLERA--GCQLLAV----------HG-RTV------DQRGMNTGLA----SWEHITAVRKAL--T 332 (487)
Q Consensus 278 iR~~~d~~~~~e~a~~le~~--G~d~I~V----------hg-Rt~------~~~g~~~g~~----~~~~i~~i~~~~--~ 332 (487)
+|.+.|..+..++++.+.+. |+|+|++ |. |+. ...++++|++ .+..++++++.+ +
T Consensus 164 l~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ 243 (294)
T cd04741 164 TPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSE 243 (294)
T ss_pred eCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCC
Confidence 99988777788899999888 9999995 43 222 1223455544 236678888888 5
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc-CcccccC
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPALFTG 374 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~lf~~ 374 (487)
+|||++|||.|.+|+.+++ .+|||+||+||+++. +||+|++
T Consensus 244 ipIig~GGI~s~~da~e~l-~aGA~~Vqv~ta~~~~gp~~~~~ 285 (294)
T cd04741 244 IQIIGVGGVLDGRGAFRMR-LAGASAVQVGTALGKEGPKVFAR 285 (294)
T ss_pred CCEEEeCCCCCHHHHHHHH-HcCCCceeEchhhhhcCchHHHH
Confidence 9999999999999999999 599999999999995 9999984
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-22 Score=203.11 Aligned_cols=167 Identities=20% Similarity=0.256 Sum_probs=141.4
Q ss_pred CCCCeeeeeccCC-------HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc---
Q psy7343 202 EDRPLIIQFCGND-------SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--- 271 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d-------~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--- 271 (487)
.+.|+++||.+++ .+++++.++.+.+.+|+||||++||..- + .....+++.+.++++++++.++
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~---g---~~~~~~~~~~~~iv~av~~~~~~~~ 200 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP---G---LRDLQGKEALRELLTAVKEERNKLG 200 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC---c---cccccCHHHHHHHHHHHHHHHhhcc
Confidence 4689999999876 5788888888877789999999999741 1 2225799999999999999886
Q ss_pred --CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC-----------CCCCCCCCC----HHHHHHHHhhC--C
Q psy7343 272 --VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ-----------RGMNTGLAS----WEHITAVRKAL--T 332 (487)
Q Consensus 272 --iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~-----------~g~~~g~~~----~~~i~~i~~~~--~ 332 (487)
+||++|++.+.+.++..++++.++++|+|+|++|+|+... .++++|++. ++.++++++.+ +
T Consensus 201 ~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ 280 (327)
T cd04738 201 KKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGK 280 (327)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCC
Confidence 9999999877666678999999999999999999986432 335677654 68899999998 8
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCC
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQ 375 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~ 375 (487)
+||+++|||.|.+|+.+++ .+|||+||+||+++.+ |++|.++
T Consensus 281 ipIi~~GGI~t~~da~e~l-~aGAd~V~vg~~~~~~gP~~~~~i 323 (327)
T cd04738 281 IPIIGVGGISSGEDAYEKI-RAGASLVQLYTGLVYEGPGLVKRI 323 (327)
T ss_pred CcEEEECCCCCHHHHHHHH-HcCCCHHhccHHHHhhCcHHHHHH
Confidence 9999999999999999999 5999999999999885 9998743
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-22 Score=203.18 Aligned_cols=166 Identities=23% Similarity=0.274 Sum_probs=141.0
Q ss_pred CCCCeeeeeccC-------CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc---
Q psy7343 202 EDRPLIIQFCGN-------DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--- 271 (487)
Q Consensus 202 ~~~Pv~Vqi~g~-------d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--- 271 (487)
.+.|++++|.++ ..+++.+.++.+++.+|+||+|++||..- + .....+++.+.++++++++.++
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~---g---~~~~~~~~~~~eiv~aVr~~~~~~~ 209 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP---G---LRDLQYGEALDELLAALKEAQAELH 209 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC---C---cccccCHHHHHHHHHHHHHHHhccc
Confidence 468999999865 46789999888877799999999999631 1 1125789999999999999987
Q ss_pred --CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC-----------CCCCCCCCC----CHHHHHHHHhhC--C
Q psy7343 272 --VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD-----------QRGMNTGLA----SWEHITAVRKAL--T 332 (487)
Q Consensus 272 --iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~-----------~~g~~~g~~----~~~~i~~i~~~~--~ 332 (487)
+||++|++.+.+.++..++++.++++|+|+|++|+|+.. ..++++|++ .|+.++++++.+ +
T Consensus 210 ~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ 289 (344)
T PRK05286 210 GYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGR 289 (344)
T ss_pred cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCC
Confidence 999999987665557899999999999999999998732 234577765 678999999998 8
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccC
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTG 374 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~ 374 (487)
+|||++|||.|.+|+.+++ ..|||+||+||+++.+ |++|.+
T Consensus 290 ipIig~GGI~s~eda~e~l-~aGAd~V~v~~~~~~~gP~~~~~ 331 (344)
T PRK05286 290 LPIIGVGGIDSAEDAYEKI-RAGASLVQIYSGLIYEGPGLVKE 331 (344)
T ss_pred CCEEEECCCCCHHHHHHHH-HcCCCHHHHHHHHHHhCchHHHH
Confidence 9999999999999999999 5999999999999875 999974
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=196.90 Aligned_cols=161 Identities=27% Similarity=0.358 Sum_probs=137.5
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecC---------CCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~G---------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~- 281 (487)
.++|.++|++++++ ||+||||+| ||..+.+.+.||+.+.++++++.++++++++.+ ++||.+|++..
T Consensus 140 i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~ 219 (327)
T cd02803 140 IEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc
Confidence 36788899988877 999999998 577788999999999999999999999999998 67999998753
Q ss_pred -----cccccHHHHHHHHHHcCCcEEEEEccccCCCCC------CCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 282 -----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM------NTGLASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 282 -----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~------~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
.+.++..++++.+++.|+|+|.|++++..+... .....+++.++++++.+++||+++|+|.|+++++++
T Consensus 220 ~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~ 299 (327)
T cd02803 220 FVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEI 299 (327)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 234577889999999999999999887654321 112346788999999999999999999999999999
Q ss_pred HHhcCCcEEEeccccccCcccccCC
Q psy7343 351 LAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
++..|||.|++||+++.||+++.+.
T Consensus 300 l~~g~aD~V~igR~~ladP~l~~k~ 324 (327)
T cd02803 300 LAEGKADLVALGRALLADPDLPNKA 324 (327)
T ss_pred HHCCCCCeeeecHHHHhCccHHHHH
Confidence 9777999999999999999998653
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=199.77 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=139.3
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecC---------CCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~G---------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~--- 281 (487)
.+.|.++|++++++ ||+||||+| +|..|.+.+.||+.+.++.+++.+|+++|+++++.||.+|++..
T Consensus 141 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~ 220 (337)
T PRK13523 141 VLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYH 220 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccC
Confidence 36788999988887 999999999 69999999999999999999999999999999999999999873
Q ss_pred ---cccccHHHHHHHHHHcCCcEEEEEccccCCC--CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 282 ---QDVNKTVEYARMLERAGCQLLAVHGRTVDQR--GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 282 ---~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~--g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
.+.++..++++.+++.|+|.|.||+++.... ..+.+ .+++..+++++.+++||+++|+|.|++++++++++.+|
T Consensus 221 ~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~-~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 221 PGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPG-YQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcc-ccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 3456778999999999999999999874321 11223 36889999999999999999999999999999977789
Q ss_pred cEEEeccccccCcccccCC
Q psy7343 357 AGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 357 d~VmiGRa~l~~P~lf~~~ 375 (487)
|+|++||++++||+++.++
T Consensus 300 D~V~~gR~~iadP~~~~k~ 318 (337)
T PRK13523 300 DLIFIGRELLRNPYFPRIA 318 (337)
T ss_pred ChHHhhHHHHhCccHHHHH
Confidence 9999999999999998743
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=190.89 Aligned_cols=186 Identities=20% Similarity=0.253 Sum_probs=150.0
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
+.|+++|+.|.+++++.++++.+++. +|+||||++||.. . .+.+|.+. .+.+.++++++++.+++||++|++.
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~-~-~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p- 172 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPT-D-PDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSP- 172 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-C-CCcccchH---HHHHHHHHHHHHhccCCCEEEEcCC-
Confidence 68999999999999999999999887 8999999999532 1 22234332 4678899999999999999999865
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccC-----------CCCCCCCCCC----HHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVD-----------QRGMNTGLAS----WEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~-----------~~g~~~g~~~----~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
+..+..++++.++++|+|+|++|+|+.. ..++++|++. ++.++++++.+++|||++|||.|.+|
T Consensus 173 -~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~D 251 (325)
T cd04739 173 -FFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAED 251 (325)
T ss_pred -CccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHH
Confidence 3457899999999999999999998622 1233556553 47788888888999999999999999
Q ss_pred HHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHHH
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP-VRLQYARGH 403 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~~ 403 (487)
+.+++ ..|||+||+||+++.+ |.++. ++.++..+++++.+ ..+.++++.
T Consensus 252 a~e~l-~aGA~~Vqv~ta~~~~gp~~~~-------~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 252 VVKYL-LAGADVVMTTSALLRHGPDYIG-------TLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred HHHHH-HcCCCeeEEehhhhhcCchHHH-------HHHHHHHHHHHHcCCCCHHHHhcc
Confidence 99999 6999999999999995 98876 45666667777765 356666664
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=192.47 Aligned_cols=161 Identities=22% Similarity=0.270 Sum_probs=132.8
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecC---------CCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc--
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ-- 282 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~G---------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~-- 282 (487)
.++|.++|++++++ ||+||||.+ ||..+.+++.||+.+.++.+++.+++++|+++++.++.+++|++.
T Consensus 136 ~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D 215 (353)
T cd02930 136 IEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLD 215 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccc
Confidence 36788899988776 999999876 688899999999999999999999999999999777777777753
Q ss_pred ------ccccHHHHHHHHHHcCCcEEEEEc-----cccCCCCCCCCCCC-HHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 283 ------DVNKTVEYARMLERAGCQLLAVHG-----RTVDQRGMNTGLAS-WEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 283 ------d~~~~~e~a~~le~~G~d~I~Vhg-----Rt~~~~g~~~g~~~-~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
+.++..++++.++++|+|.|.|+. ++.... .+.+... .+..+++++.+++||+++|+|.++++++++
T Consensus 216 ~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~-~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 216 LVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIA-TSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccc-ccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHH
Confidence 334678899999999999999943 221111 1222223 356789999999999999999999999999
Q ss_pred HHhcCCcEEEeccccccCcccccCCC
Q psy7343 351 LAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
+++.++|+|++||+++.|||++++..
T Consensus 295 i~~g~~D~V~~gR~~l~dP~~~~k~~ 320 (353)
T cd02930 295 LADGDADMVSMARPFLADPDFVAKAA 320 (353)
T ss_pred HHCCCCChhHhhHHHHHCccHHHHHH
Confidence 98788999999999999999998653
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-20 Score=187.99 Aligned_cols=177 Identities=20% Similarity=0.253 Sum_probs=140.0
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
+.|+++|+++.+++++.++++.++++ +|+||||++||... .+..|. ...+.+.++++++++.+++||++|++.+
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~--~~~~g~---~~~~~~~eil~~v~~~~~iPV~vKl~p~ 175 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTD--PDISGA---EVEQRYLDILRAVKSAVSIPVAVKLSPY 175 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC--CCCccc---cHHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 58999999999999999999998887 89999999996531 122232 2346678999999999999999998653
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCC-----------CCCCCCCCC----HHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQ-----------RGMNTGLAS----WEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~-----------~g~~~g~~~----~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
..+..++++.++++|+|+|++|+|+... ..+++|++. ++.+.++++.+++|||++|||.|.+|
T Consensus 176 --~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~D 253 (334)
T PRK07565 176 --FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAED 253 (334)
T ss_pred --chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHH
Confidence 3467899999999999999999986321 123555543 47788888888999999999999999
Q ss_pred HHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
+.+++ .+|||+||+||+++.+ |.++. ++.++..+++.+.+
T Consensus 254 a~e~l-~aGA~~V~v~t~~~~~g~~~~~-------~i~~~L~~~l~~~g 294 (334)
T PRK07565 254 VIKML-LAGADVVMIASALLRHGPDYIG-------TILRGLEDWMERHG 294 (334)
T ss_pred HHHHH-HcCCCceeeehHHhhhCcHHHH-------HHHHHHHHHHHHcC
Confidence 99999 6999999999999996 87665 34445445555443
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=193.92 Aligned_cols=162 Identities=26% Similarity=0.357 Sum_probs=139.4
Q ss_pred CHHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee--
Q psy7343 214 DSKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR-- 279 (487)
Q Consensus 214 d~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR-- 279 (487)
..++|.++|++++++ ||+||||+|| |..+.+++.||+.++++++++.+++++|++++ ++||.+|+.
T Consensus 147 ~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~ 226 (338)
T cd04733 147 VIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA 226 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH
Confidence 457899999999887 9999999997 88899999999999999999999999999998 478998886
Q ss_pred ----cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC---C------CCCCHHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 280 ----IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN---T------GLASWEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 280 ----~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~---~------g~~~~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
.+++.++..++++.++++|+|.|.||+++..+.... . ....++..+++++.+++||+++|+|.++++
T Consensus 227 ~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~ 306 (338)
T cd04733 227 DFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAA 306 (338)
T ss_pred HcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHH
Confidence 345667888999999999999999999875443211 0 011357888999999999999999999999
Q ss_pred HHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+++++++.+||.|++||++++||+++++.
T Consensus 307 a~~~l~~g~aD~V~lgR~~iadP~~~~k~ 335 (338)
T cd04733 307 MEQALASGAVDGIGLARPLALEPDLPNKL 335 (338)
T ss_pred HHHHHHcCCCCeeeeChHhhhCccHHHHH
Confidence 99999878899999999999999998754
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=187.09 Aligned_cols=161 Identities=16% Similarity=0.158 Sum_probs=132.2
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD- 283 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d- 283 (487)
.++|.++|++++++ ||+||||+|| |..+.+.+.||+.++++.+++.|++++|+++++.++.+++|++.+
T Consensus 149 i~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~ 228 (370)
T cd02929 149 RRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDE 228 (370)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHH
Confidence 36788999988887 9999999999 888999999999999999999999999999998777888887532
Q ss_pred ---------cccHHHHHHHHHHcCCcEEEEEccccCCC----CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 284 ---------VNKTVEYARMLERAGCQLLAVHGRTVDQR----GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 284 ---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~----g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
.++..++++.+++. +|.+.+++...... ..+.....++.++++++.+++||+++|+|.++++++++
T Consensus 229 ~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~ 307 (370)
T cd02929 229 LIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEV 307 (370)
T ss_pred hcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 23456778888775 79998854321110 01122235788899999999999999999999999999
Q ss_pred HHhcCCcEEEeccccccCcccccCCC
Q psy7343 351 LAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
+++.+||+|++||++++||+++.+..
T Consensus 308 l~~g~~D~V~~gR~~ladP~l~~k~~ 333 (370)
T cd02929 308 VKSGILDLIGAARPSIADPFLPKKIR 333 (370)
T ss_pred HHcCCCCeeeechHhhhCchHHHHHH
Confidence 98788999999999999999998654
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=200.88 Aligned_cols=157 Identities=21% Similarity=0.298 Sum_probs=132.0
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecC---------CCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~G---------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~- 281 (487)
.++|.++|+++.++ +|+||||+| ||..+.+++.||+.+.++.+++.||+++|++++ ++||.+|++..
T Consensus 550 i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~ 629 (765)
T PRK08255 550 RDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHD 629 (765)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccc
Confidence 36788899988777 999999999 899999999999999999999999999999987 47999999862
Q ss_pred -----cccccHHHHHHHHHHcCCcEEEEE-ccccCCC-CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 282 -----QDVNKTVEYARMLERAGCQLLAVH-GRTVDQR-GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 282 -----~d~~~~~e~a~~le~~G~d~I~Vh-gRt~~~~-g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
++.++..++++.+++.|+|.|.|| |++..+. ..+......+..+++|+.+++||+++|+|++++++++++++.
T Consensus 630 ~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 630 WVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcC
Confidence 234567899999999999999998 4443221 111111234677889999999999999999999999999888
Q ss_pred CCcEEEeccccccCccc
Q psy7343 355 GVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~l 371 (487)
+||+|++||++++||++
T Consensus 710 ~~D~v~~gR~~l~dP~~ 726 (765)
T PRK08255 710 RADLCALARPHLADPAW 726 (765)
T ss_pred CcceeeEcHHHHhCccH
Confidence 99999999999999955
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.8e-20 Score=190.62 Aligned_cols=162 Identities=19% Similarity=0.311 Sum_probs=136.1
Q ss_pred HHHHHHHHHhhCCc-CcEEEeec---CC-------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINI---GC-------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~---Gc-------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~ 281 (487)
.++|.++|++++++ ||+||||+ || |..+.+.+.||+.++++.+++.+|+++|++++ ++||.+|++..
T Consensus 149 i~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~ 228 (382)
T cd02931 149 VGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVK 228 (382)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEech
Confidence 36789999999887 99999998 66 66889999999999999999999999999998 57899998841
Q ss_pred --------------------cccccHHHHHHHHHHcCCcEEEEEccccCCCC-----CCCCCC-CHHHHHHHHhhCCCcE
Q psy7343 282 --------------------QDVNKTVEYARMLERAGCQLLAVHGRTVDQRG-----MNTGLA-SWEHITAVRKALTIPV 335 (487)
Q Consensus 282 --------------------~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g-----~~~g~~-~~~~i~~i~~~~~iPV 335 (487)
.+.++..++++.++++|+|.|.||+++..+.. .+.+.. .++.++++++.+++||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv 308 (382)
T cd02931 229 SYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPV 308 (382)
T ss_pred hhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCE
Confidence 12356678999999999999999988754311 111112 2577889999999999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
+++|+|++++++++++++.+||+|++||+++.||+++++..
T Consensus 309 i~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 349 (382)
T cd02931 309 IMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIR 349 (382)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHH
Confidence 99999999999999998788999999999999999998653
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-20 Score=187.31 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=135.4
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC-cEEEEeeccc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV-PVSCKIRIYQ- 282 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i-PV~vKiR~~~- 282 (487)
.+.|.++|++++++ ||+||||+|| |..+.+.+.||+.+.++.+++.+++++||++++. +|.+|++...
T Consensus 151 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~ 230 (338)
T cd02933 151 VADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGT 230 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECcccc
Confidence 36788999999887 9999999999 8889999999999999999999999999999865 7888886531
Q ss_pred --------ccccHHHHHHHHHHcCCcEEEE-EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 283 --------DVNKTVEYARMLERAGCQLLAV-HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 283 --------d~~~~~e~a~~le~~G~d~I~V-hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
+.++..++++.+++.|+|.|.| ||+...+. ...+++.++++++.+++||+++|+|+ ++++++++++
T Consensus 231 ~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~ 305 (338)
T cd02933 231 FNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALAD 305 (338)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHc
Confidence 2346678999999999999999 56544322 44678999999999999999999997 9999999987
Q ss_pred cCCcEEEeccccccCcccccCC
Q psy7343 354 TGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
.+||+|++||++++||+++++.
T Consensus 306 g~~D~V~~gR~~ladP~~~~k~ 327 (338)
T cd02933 306 GKADLVAFGRPFIANPDLVERL 327 (338)
T ss_pred CCCCEEEeCHhhhhCcCHHHHH
Confidence 8899999999999999999865
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-20 Score=190.93 Aligned_cols=161 Identities=18% Similarity=0.271 Sum_probs=134.8
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecC---------CCcceeeccCccccccCChHHHHHHHHHHhhhcc----CcEEEEeec
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ----VPVSCKIRI 280 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~G---------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~----iPV~vKiR~ 280 (487)
.++|.++|++++++ ||+||||++ ||..+.++++||+.+.++.+++.||+++|+++++ .++.+.+|+
T Consensus 143 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~ 222 (353)
T cd04735 143 IDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRF 222 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEE
Confidence 36788999999887 999999997 5989999999999999999999999999999987 677888887
Q ss_pred ccc--------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH
Q psy7343 281 YQD--------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 281 ~~d--------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~ 350 (487)
+.+ .++..++++.+++.|+|.|.||+.+............++.++.+++.+ ++||+++|+|+|+++++++
T Consensus 223 s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~ 302 (353)
T cd04735 223 SPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEA 302 (353)
T ss_pred CcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHH
Confidence 643 246788999999999999999876543322122233567777787776 8999999999999999999
Q ss_pred HHhcCCcEEEeccccccCcccccCCC
Q psy7343 351 LAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
++. |||+|++||++++||+++.+..
T Consensus 303 l~~-gaD~V~~gR~liadPdl~~k~~ 327 (353)
T cd04735 303 LET-GADLVAIGRGLLVDPDWVEKIK 327 (353)
T ss_pred HHc-CCChHHHhHHHHhCccHHHHHH
Confidence 965 9999999999999999987653
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=185.68 Aligned_cols=160 Identities=24% Similarity=0.250 Sum_probs=134.2
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeec--
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRI-- 280 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~-- 280 (487)
.++|+++|+++.++ ||+||||+|| |..+.+++.||+.+.++++++.+++++|++.+ ++||.+|++.
T Consensus 153 i~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~ 232 (336)
T cd02932 153 VDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD 232 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc
Confidence 36788889888777 9999999998 77889999999999999999999999999999 7899999874
Q ss_pred ----ccccccHHHHHHHHHHcCCcEEEEEcc--ccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 281 ----YQDVNKTVEYARMLERAGCQLLAVHGR--TVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 281 ----~~d~~~~~e~a~~le~~G~d~I~VhgR--t~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
+++.++..++++.+++.|+|.|.||+. +..+........+++..+++++.+++||+++|+|.|++++++++++.
T Consensus 233 ~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 233 WVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 345567889999999999999999743 22221111112245888999999999999999999999999999766
Q ss_pred CCcEEEeccccccCcccccC
Q psy7343 355 GVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~lf~~ 374 (487)
.||.|++||+++.||++..+
T Consensus 313 ~aD~V~~gR~~i~dP~~~~k 332 (336)
T cd02932 313 RADLVALGRELLRNPYWPLH 332 (336)
T ss_pred CCCeehhhHHHHhCccHHHH
Confidence 79999999999999999764
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=179.14 Aligned_cols=189 Identities=22% Similarity=0.344 Sum_probs=150.3
Q ss_pred CCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 203 DRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 203 ~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
++|++++|.+ .+++++.++++.+++. .|+||||++||+.-..++ .|.++..+++.+.++++++++.+++||++|+.
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLs- 190 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAKATVPVWAKMT- 190 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHhhcCceEEEeC-
Confidence 6899999976 8999999999999987 899999999997533233 36667789999999999999999999999984
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccC-------------------CCCCCCCCCCH----HHHHHHHhhC------
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVD-------------------QRGMNTGLASW----EHITAVRKAL------ 331 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~-------------------~~g~~~g~~~~----~~i~~i~~~~------ 331 (487)
++..+..++++.+++.|+|+|++..++.. ..|+++|++-. ..+.++++.+
T Consensus 191 -Pn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~ 269 (385)
T PLN02495 191 -PNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPE 269 (385)
T ss_pred -CChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccC
Confidence 45667899999999999999988554321 22445555422 3344455554
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHH
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP-VRLQYARG 402 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~ 402 (487)
++||++.|||.|.+|+.+++ ..||+.||++++++.+ |.++. ++.+++.+++++.+ ..+..+++
T Consensus 270 ~ipIiGvGGI~s~~Da~e~i-~aGAs~VQv~Ta~~~~Gp~vi~-------~i~~~L~~~m~~~G~~si~e~~G 334 (385)
T PLN02495 270 DRSLSGIGGVETGGDAAEFI-LLGADTVQVCTGVMMHGYPLVK-------NLCAELQDFMKKHNFSSIEDFRG 334 (385)
T ss_pred CCcEEEECCCCCHHHHHHHH-HhCCCceeEeeeeeecCcHHHH-------HHHHHHHHHHHHcCCCCHHHHhC
Confidence 49999999999999999999 7999999999999999 99887 45667677777765 34555554
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=175.38 Aligned_cols=188 Identities=20% Similarity=0.212 Sum_probs=144.1
Q ss_pred CCccccccccCCC------chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccC-CHHHHHH
Q psy7343 148 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGN-DSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~t------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~-d~~~~~~ 220 (487)
+.|++++||++.+ +..++..+.++|+..+.+.+... .. +++.... +.|+.+|+.+. +++...+
T Consensus 64 ~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~-----~~---~~i~~~~--~~~~~~ql~~~~~~~~~~~ 133 (299)
T cd02809 64 AMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTT-----SL---EEVAAAA--PGPRWFQLYVPRDREITED 133 (299)
T ss_pred CCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcC-----CH---HHHHHhc--CCCeEEEEeecCCHHHHHH
Confidence 5799999997664 45678899999987766554421 11 1222121 27999999864 8888888
Q ss_pred HHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCC
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~ 299 (487)
+++.+++. +++|++|++||.. ..+ ..+ ++++++++.+++||++|+. ...+.++.++++|+
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~---~~~------~~~----~~i~~l~~~~~~pvivK~v------~s~~~a~~a~~~G~ 194 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVL---GRR------LTW----DDLAWLRSQWKGPLILKGI------LTPEDALRAVDAGA 194 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCC---CCC------CCH----HHHHHHHHhcCCCEEEeec------CCHHHHHHHHHCCC
Confidence 88887666 8999999999863 111 234 4556677778899999963 33566889999999
Q ss_pred cEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 300 d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
|+|.+++++..+. +.+.+.|+.+.++++.+ ++|||++|||++..|+.+++ ..|||+||+||+++.
T Consensus 195 d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal-~lGAd~V~ig~~~l~ 261 (299)
T cd02809 195 DGIVVSNHGGRQL--DGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKAL-ALGADAVLIGRPFLY 261 (299)
T ss_pred CEEEEcCCCCCCC--CCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEcHHHHH
Confidence 9999988765543 56788999999999887 59999999999999999999 699999999995443
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=172.56 Aligned_cols=186 Identities=25% Similarity=0.357 Sum_probs=151.3
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
.+.+++....+...+.+.+.+..+++. +|+|++|.+||+. .+ |.++..+++.+.++++++++..++||.+|+-
T Consensus 95 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt---~g--~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~ 169 (310)
T COG0167 95 IGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNT---PG--GRALGQDPELLEKLLEAVKAATKVPVFVKLA 169 (310)
T ss_pred cCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCC---CC--hhhhccCHHHHHHHHHHHHhcccCceEEEeC
Confidence 345666667777888888888888776 5999999999972 22 5677779999999999999999999999983
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEcccc---------------CCCCCCCCCCCH----HHHHHHHhhCC--CcEEEc
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTV---------------DQRGMNTGLASW----EHITAVRKALT--IPVIAN 338 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~---------------~~~g~~~g~~~~----~~i~~i~~~~~--iPVi~n 338 (487)
++..+..++++.++++|+|+|++..-+. .+.|+++|++-. ..++++++.++ +|||+.
T Consensus 170 --P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGv 247 (310)
T COG0167 170 --PNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGV 247 (310)
T ss_pred --CCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEe
Confidence 3677899999999999999998855221 345678887743 77888888875 999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHH
Q psy7343 339 GNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP-VRLQYARG 402 (487)
Q Consensus 339 GgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~ 402 (487)
|||.|.+|+.+++ ..||+.|++|++++.+ |++|. ++.+...+++++++ ..++.+++
T Consensus 248 GGI~s~~DA~E~i-~aGA~~vQv~Tal~~~Gp~i~~-------~I~~~l~~~l~~~g~~si~d~iG 305 (310)
T COG0167 248 GGIETGEDALEFI-LAGASAVQVGTALIYKGPGIVK-------EIIKGLARWLEEKGFESIQDIIG 305 (310)
T ss_pred cCcCcHHHHHHHH-HcCCchheeeeeeeeeCchHHH-------HHHHHHHHHHHHcCCCCHHHHhc
Confidence 9999999999999 7999999999999999 99998 45666667777765 33555554
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=170.55 Aligned_cols=160 Identities=27% Similarity=0.361 Sum_probs=129.2
Q ss_pred HHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC--cEEEEeecc--
Q psy7343 216 KNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV--PVSCKIRIY-- 281 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i--PV~vKiR~~-- 281 (487)
++|.++|++++++ ||+||||.++ |..|.+.+.||+++.++.++..|++++|+++++. ||.+++...
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~ 228 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF 228 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 6789999999888 9999999886 8889999999999999999999999999999965 555555431
Q ss_pred -----cccccHHHHHHHHHHcC-CcEEEEEccccC--CCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 282 -----QDVNKTVEYARMLERAG-CQLLAVHGRTVD--QRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 282 -----~d~~~~~e~a~~le~~G-~d~I~VhgRt~~--~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
++.++..++++.+++.| +|.|.+.+-... +...+.+ .........++..+++|||++|+|++++.++++++
T Consensus 229 ~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~ 308 (363)
T COG1902 229 FDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILA 308 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH
Confidence 12347789999999999 799999654332 1111111 12235667788888999999999999999999996
Q ss_pred hcCCcEEEeccccccCcccccCC
Q psy7343 353 QTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 353 ~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+.+||.|.+||++++||++..+.
T Consensus 309 ~g~aDlVa~gR~~ladP~~~~k~ 331 (363)
T COG1902 309 SGRADLVAMGRPFLADPDLVLKA 331 (363)
T ss_pred cCCCCEEEechhhhcCccHHHHH
Confidence 66699999999999999997654
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-18 Score=174.28 Aligned_cols=231 Identities=16% Similarity=0.159 Sum_probs=149.1
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+.++++|||+|+||.+||.+|+++|+ ++ |+++++.+... ...++.+|+... .+.+.. +
T Consensus 44 ~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~~----------~~~~~~~QI~g~---~~~~~~-a-- 102 (369)
T TIGR01304 44 ELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRHE----------DPDPAIAKIAEA---YEEGDQ-A-- 102 (369)
T ss_pred CCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcCC----------CHHHHHHHHhhc---CCChHH-H--
Confidence 45899999999999999999999999 76 88888876432 334566896321 112111 1
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeec
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINI 236 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~ 236 (487)
....+..+.+++. .++++..++++.... ..|++|++- ++.+..+.++.++++
T Consensus 103 ------~aa~~~~e~~~~~------------~~p~l~~~ii~~vr~-a~VtvkiRl-~~~~~~e~a~~l~eA-------- 154 (369)
T TIGR01304 103 ------AATRLLQELHAAP------------LKPELLGERIAEVRD-SGVITAVRV-SPQNAREIAPIVVKA-------- 154 (369)
T ss_pred ------HHHHHHHHcCCCc------------cChHHHHHHHHHHHh-cceEEEEec-CCcCHHHHHHHHHHC--------
Confidence 1122334444332 356666666642221 138999986 345677888877776
Q ss_pred CCCcceeeccCccccc----cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC
Q psy7343 237 GCPQMVAKRGHYGAYL----QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312 (487)
Q Consensus 237 GcP~~i~~~gr~G~~l----~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~ 312 (487)
|+ ..++.|+++.++. ..+|..+.++++ ..++||++. ++.+..++.+.+ ++|+|+|++ ||+....
T Consensus 155 Ga-d~I~ihgrt~~q~~~sg~~~p~~l~~~i~----~~~IPVI~G-----~V~t~e~A~~~~-~aGaDgV~~-G~gg~~~ 222 (369)
T TIGR01304 155 GA-DLLVIQGTLVSAEHVSTSGEPLNLKEFIG----ELDVPVIAG-----GVNDYTTALHLM-RTGAAGVIV-GPGGANT 222 (369)
T ss_pred CC-CEEEEeccchhhhccCCCCCHHHHHHHHH----HCCCCEEEe-----CCCCHHHHHHHH-HcCCCEEEE-CCCCCcc
Confidence 33 3344555443221 246776666554 458999983 566666665555 599999997 7644321
Q ss_pred C-CCC--CCCCHHHHHHHHh-------hC---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 313 G-MNT--GLASWEHITAVRK-------AL---TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 313 g-~~~--g~~~~~~i~~i~~-------~~---~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
. ... +.+....+.++.+ .. .+|||+.|||.+..|+.+.+ ..|||+||+|++++.--+
T Consensus 223 ~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAl-AlGAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 223 TRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAI-ACGADAVVLGSPLARAAE 292 (369)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHH-HcCCCEeeeHHHHHhhhc
Confidence 1 111 2333445554432 22 39999999999999999999 789999999999877543
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=171.25 Aligned_cols=178 Identities=19% Similarity=0.268 Sum_probs=144.6
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeecc--CCHHHHHHHHHh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG--NDSKNLTEAAKL 224 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g--~d~~~~~~aa~~ 224 (487)
+.|+++|||++++|.+||.++.++|+ ++ +++++|.+..+. ..|+.+||++ ++++. .+++++
T Consensus 44 ~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~~~----------~~~~~~QI~g~~~~~~~-a~aa~~ 107 (369)
T TIGR01304 44 ELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRHED----------PDPAIAKIAEAYEEGDQ-AAATRL 107 (369)
T ss_pred CCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcCCC----------HHHHHHHHhhcCCChHH-HHHHHH
Confidence 56999999999999999999999997 65 777776554322 2355689997 56656 788888
Q ss_pred hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 225 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 225 ~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
+++. +. .. .+++++.++++++++.. |++|+|++ ..+..++++.++++|+|.|.+
T Consensus 108 ~~e~--------~~-~~------------~~p~l~~~ii~~vr~a~---VtvkiRl~--~~~~~e~a~~l~eAGad~I~i 161 (369)
T TIGR01304 108 LQEL--------HA-AP------------LKPELLGERIAEVRDSG---VITAVRVS--PQNAREIAPIVVKAGADLLVI 161 (369)
T ss_pred HHHc--------CC-Cc------------cChHHHHHHHHHHHhcc---eEEEEecC--CcCHHHHHHHHHHCCCCEEEE
Confidence 8775 11 11 37999999999999863 99999995 347899999999999999999
Q ss_pred EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 305 HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 305 hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
|||++.|.. .++..+|..+.++++..++|||+ |+|.|.+++.+++ ++|||+||+|++.-....
T Consensus 162 hgrt~~q~~-~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~-~aGaDgV~~G~gg~~~~~ 224 (369)
T TIGR01304 162 QGTLVSAEH-VSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLM-RTGAAGVIVGPGGANTTR 224 (369)
T ss_pred eccchhhhc-cCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEEECCCCCcccc
Confidence 999988762 25567898899999999999998 8999999999999 599999999998755433
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=179.14 Aligned_cols=159 Identities=18% Similarity=0.216 Sum_probs=132.2
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~- 281 (487)
.++|.++|++++++ ||+||||++| |..+.+++.||+.+.++.+++.|++++|++++ ++||.+|++..
T Consensus 143 i~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~ 222 (361)
T cd04747 143 IAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWK 222 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccc
Confidence 36788999999887 9999999999 99999999999999999999999999999998 47899988741
Q ss_pred ---------cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCC-----------
Q psy7343 282 ---------QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNI----------- 341 (487)
Q Consensus 282 ---------~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI----------- 341 (487)
.+.++..++++.+++.|+|.|.+..+... .+.+.+ .+++..+++++.+++||+++|+|
T Consensus 223 ~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~-~~~~~~-~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~ 300 (361)
T cd04747 223 QQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFW-EPEFEG-SELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFA 300 (361)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCcc-CCCcCc-cchhHHHHHHHHcCCCEEEECCcccccccccccc
Confidence 12234567788899999999888544211 112333 35777888999999999999999
Q ss_pred -------CCHHHHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 342 -------QCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 342 -------~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+|+++++++++..+||+|++||++++|||++++.
T Consensus 301 ~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~ 341 (361)
T cd04747 301 GDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKV 341 (361)
T ss_pred cccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHH
Confidence 6999999999778899999999999999998765
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=173.34 Aligned_cols=188 Identities=17% Similarity=0.258 Sum_probs=143.9
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
+.|+++++.|.+++++.+.++.++++ .|+||||++||+. .+ +..+..|++.+.++++++++.+++||++|+..
T Consensus 92 ~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~---~~--~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp 166 (310)
T PRK02506 92 NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNV---PG--KPQIAYDFETTEQILEEVFTYFTKPLGVKLPP 166 (310)
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCC---CC--ccccccCHHHHHHHHHHHHHhcCCccEEecCC
Confidence 58999999999999999999999875 7999999999973 12 33345689999999999999999999999976
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEcc-------------c----cCCCCCCCCCCCH----HHHHHHHhhC--CCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGR-------------T----VDQRGMNTGLASW----EHITAVRKAL--TIPVIA 337 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgR-------------t----~~~~g~~~g~~~~----~~i~~i~~~~--~iPVi~ 337 (487)
..+.....+++..+.+.|+++|....+ . ....|+++|++.. ..+.++++.+ ++|||+
T Consensus 167 ~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig 246 (310)
T PRK02506 167 YFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIG 246 (310)
T ss_pred CCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEE
Confidence 544434444444445667776543221 1 1123566776643 6677777777 799999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEecccccc-CcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHHH
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPALFTGQTRPAWELASEYLDLVAQYP-VRLQYARGH 403 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~~ 403 (487)
+|||.|.+|+.+++ ..||+.||++++++. +|.+|. ++.++..+++++.+ ..+.++++.
T Consensus 247 ~GGI~s~~da~e~i-~aGA~~Vqv~ta~~~~gp~~~~-------~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 247 TGGVKTGRDAFEHI-LCGASMVQVGTALHKEGPAVFE-------RLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred ECCCCCHHHHHHHH-HcCCCHHhhhHHHHHhChHHHH-------HHHHHHHHHHHHhCCCCHHHHhCh
Confidence 99999999999999 899999999999998 699987 45666667777765 456677764
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-19 Score=172.94 Aligned_cols=193 Identities=15% Similarity=0.164 Sum_probs=131.5
Q ss_pred ceEEecCCCCCCHHHHH-HHHHcCCCeE--------------------EccceeccccccCcHHHHHHhhhCCCCCceee
Q psy7343 80 RFILAPMVDASELPWRL-LSRRYGSHLC--------------------YTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138 (487)
Q Consensus 80 ~~~LAPMag~td~pFR~-l~~~~Gadl~--------------------~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~v 138 (487)
+++||||+|+||.+||. +|..+|++++ ++||++.+.+ +--+.....+ ...+.|+++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~-~~~~~~~~~~--~~~~~p~~v 77 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPL-EFIEGEIKAL--KDSNVLVGV 77 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchH-HHHHHHHHHh--hccCCeEEE
Confidence 57999999999999999 6788887766 6777766622 2112222222 223569999
Q ss_pred eeccccCCCCCccccccccC-CCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc-CCCCCCeeeeec-
Q psy7343 139 QRTIFPRLGSPRFILAPMVD-ASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS-TPEDRPLIIQFC- 211 (487)
Q Consensus 139 Ql~~~~~~g~~~~~lApma~-~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~-~~~~~Pv~Vqi~- 211 (487)
|+.+ +.+..++..+. +.+. ...+..|+| ||.+.+. |++|+++++++.++++. ...+.||+||++
T Consensus 78 qi~g-----~~~~~~~~aa~~~~~~-~~~ielN~g---CP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~ 148 (233)
T cd02911 78 NVRS-----SSLEPLLNAAALVAKN-AAILEINAH---CRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRA 148 (233)
T ss_pred EecC-----CCHHHHHHHHHHHhhc-CCEEEEECC---CCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 9753 22222221111 1121 245667888 8877543 78899999998888862 224789999999
Q ss_pred cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHH
Q psy7343 212 GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~ 290 (487)
+.+ ++..++++.++++ .|+|.+..+-+ | ...||+.+.++ + +++||++|+ ++.+..++
T Consensus 149 g~~-~~~~~la~~l~~aG~d~ihv~~~~~---------g--~~ad~~~I~~i----~--~~ipVIgnG----gI~s~eda 206 (233)
T cd02911 149 GVD-VDDEELARLIEKAGADIIHVDAMDP---------G--NHADLKKIRDI----S--TELFIIGNN----SVTTIESA 206 (233)
T ss_pred CcC-cCHHHHHHHHHHhCCCEEEECcCCC---------C--CCCcHHHHHHh----c--CCCEEEEEC----CcCCHHHH
Confidence 555 6778888888877 67665432221 1 13577766653 3 579999998 88899999
Q ss_pred HHHHHHcCCcEEEEEccc
Q psy7343 291 ARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt 308 (487)
.+.++ +|+|+||| ||.
T Consensus 207 ~~~l~-~GaD~Vmi-GR~ 222 (233)
T cd02911 207 KEMFS-YGADMVSV-ARA 222 (233)
T ss_pred HHHHH-cCCCEEEE-cCC
Confidence 98887 89999999 996
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-17 Score=166.75 Aligned_cols=156 Identities=14% Similarity=0.152 Sum_probs=124.9
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC-cEEEEeecc--
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV-PVSCKIRIY-- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i-PV~vKiR~~-- 281 (487)
.++|.++|++++++ ||+||||+++ |..|.+.+.||+.+.++.+++.|++++|+++++- .|.+++...
T Consensus 158 i~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~ 237 (362)
T PRK10605 158 VNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGT 237 (362)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 36789999999888 9999999887 7789999999999999999999999999999853 344444221
Q ss_pred -------ccccc-HHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 282 -------QDVNK-TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 282 -------~d~~~-~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
.+.++ ..++++.+++.|+|.|.|+....... .....+..+++++.+++||+++|++ |++.+++++++
T Consensus 238 ~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~----~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~ 312 (362)
T PRK10605 238 FNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG----EPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGK 312 (362)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC----ccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHc
Confidence 12234 67889999999999999954211110 1112456688999999999999986 89999999976
Q ss_pred cCCcEEEeccccccCcccccCC
Q psy7343 354 TGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
..||.|++||++++||++..+.
T Consensus 313 G~~D~V~~gR~~iadPd~~~k~ 334 (362)
T PRK10605 313 GLIDAVAFGRDYIANPDLVARL 334 (362)
T ss_pred CCCCEEEECHHhhhCccHHHHH
Confidence 6799999999999999998754
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-17 Score=168.56 Aligned_cols=166 Identities=22% Similarity=0.276 Sum_probs=134.5
Q ss_pred CCCCeeeeeccC-------CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc---
Q psy7343 202 EDRPLIIQFCGN-------DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--- 271 (487)
Q Consensus 202 ~~~Pv~Vqi~g~-------d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--- 271 (487)
.+.|++|++.++ ..+++.+.++.+.+..|+||||.+||+. . |.....+++.+.++++++++.++
T Consensus 133 ~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~--~----~~~~~~~~~~~~~i~~~V~~~~~~~~ 206 (335)
T TIGR01036 133 YKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNT--P----GLRDLQYKAELRDLLTAVKQEQDGLR 206 (335)
T ss_pred CCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCC--C----CcccccCHHHHHHHHHHHHHHHHhhh
Confidence 457899998755 4689999999888778999999999974 1 12223689999999999998876
Q ss_pred ----CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc-----------CCCCCCCCCCCH----HHHHHHHhhC-
Q psy7343 272 ----VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV-----------DQRGMNTGLASW----EHITAVRKAL- 331 (487)
Q Consensus 272 ----iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~-----------~~~g~~~g~~~~----~~i~~i~~~~- 331 (487)
+||++|+....+.++..++++.++++|+|+|++..++. ...|+++|++.. ..+.++++.+
T Consensus 207 ~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~ 286 (335)
T TIGR01036 207 RVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQ 286 (335)
T ss_pred hccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 99999995544444789999999999999999866542 134567776643 6777787777
Q ss_pred -CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccC
Q psy7343 332 -TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTG 374 (487)
Q Consensus 332 -~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~ 374 (487)
++|||++|||.|.+|+.+++ ..|||.|++|++++.+ |+++.+
T Consensus 287 ~~ipiig~GGI~~~~da~e~l-~aGA~~Vqv~ta~~~~Gp~~~~~ 330 (335)
T TIGR01036 287 GRLPIIGVGGISSAQDALEKI-RAGASLLQIYSGFIYWGPPLVKE 330 (335)
T ss_pred CCCCEEEECCCCCHHHHHHHH-HcCCcHHHhhHHHHHhCchHHHH
Confidence 69999999999999999999 6899999999999884 998764
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=164.76 Aligned_cols=177 Identities=18% Similarity=0.209 Sum_probs=138.2
Q ss_pred CCeeeeeccC-----CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh---------
Q psy7343 204 RPLIIQFCGN-----DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA--------- 269 (487)
Q Consensus 204 ~Pv~Vqi~g~-----d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~--------- 269 (487)
.|++|+|.++ ..++|.+.++.+.+..|+|+||..||+. . + .....+++.+.++++++++.
T Consensus 187 ~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNt--p-g---lr~lq~~~~l~~ll~~V~~~~~~~~~~~~ 260 (409)
T PLN02826 187 GILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNT--P-G---LRKLQGRKQLKDLLKKVLAARDEMQWGEE 260 (409)
T ss_pred ceEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCC--C-C---cccccChHHHHHHHHHHHHHHHHhhhccc
Confidence 4899999766 4789999999888889999999999974 1 1 11235788888998888643
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc------------CCCCCCCCCCC----HHHHHHHHhhC--
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV------------DQRGMNTGLAS----WEHITAVRKAL-- 331 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~------------~~~g~~~g~~~----~~~i~~i~~~~-- 331 (487)
.++||++|+....+.++..++++.+.++|+|+|++..++. .+.|+++|.+. .+.+.++++.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999995443444788999999999999999876432 23456788763 47788888887
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
++|||+.|||.|.+|+.+++ ..||+.|+++++++.+ |+++. ++.++..+++++.+
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i-~AGAs~VQv~Ta~~~~Gp~~i~-------~I~~eL~~~l~~~G 396 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKI-RAGASLVQLYTAFAYEGPALIP-------RIKAELAACLERDG 396 (409)
T ss_pred CCcEEEECCCCCHHHHHHHH-HhCCCeeeecHHHHhcCHHHHH-------HHHHHHHHHHHHcC
Confidence 79999999999999999999 7999999999999885 88776 34455555565554
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-16 Score=158.78 Aligned_cols=207 Identities=20% Similarity=0.255 Sum_probs=148.8
Q ss_pred CCccccccccCCCchHH------HHHHHHhCCccceeccccchhhhcChhHHHHH--HhcCCCCCCeeeeecc-----CC
Q psy7343 148 SPRFILAPMVDASELPW------RLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI--LMSTPEDRPLIIQFCG-----ND 214 (487)
Q Consensus 148 ~~~~~lApma~~td~~f------r~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~--l~~~~~~~Pv~Vqi~g-----~d 214 (487)
+.|++.+||+|.++..+ ..++.+.|..++...+ .+.+.+++....+ ++....+.|++++|+. ++
T Consensus 60 ~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~---~~~~~~~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~ 136 (352)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQ---RAALKDPELADSFSVVRKVAPDGLLFANLGAVQLYGYG 136 (352)
T ss_pred cCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEeccc---HhhccChhhHHHHHHHHHHCCCceEEeecCccccCCCC
Confidence 67999999999987544 3477788866655433 3335566633332 2334457899998873 34
Q ss_pred HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHH
Q psy7343 215 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294 (487)
Q Consensus 215 ~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~l 294 (487)
++.+.++++.++ .|+++||++|++........ .+++.+.+.++++++.+++||++|+.- .....+.++.+
T Consensus 137 ~~~~~~~~~~~~--adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~g---~g~s~~~a~~l 206 (352)
T PRK05437 137 VEEAQRAVEMIE--ADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKEVG---FGISKETAKRL 206 (352)
T ss_pred HHHHHHHHHhcC--CCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEeCC---CCCcHHHHHHH
Confidence 566666666663 68999999997765554431 367777788999999999999999742 12447889999
Q ss_pred HHcCCcEEEEEccccCC-------CC----CCC-----CCCCHHHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 295 ERAGCQLLAVHGRTVDQ-------RG----MNT-----GLASWEHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~-------~g----~~~-----g~~~~~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
+++|+|+|.|+|++... ++ .+. |.+..+.+.++++. .++|||++|||+|..|+.+++ ..|||
T Consensus 207 ~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l-~~GAd 285 (352)
T PRK05437 207 ADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKAL-ALGAD 285 (352)
T ss_pred HHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHH-HcCCC
Confidence 99999999998875310 10 001 22233677788887 499999999999999999999 67999
Q ss_pred EEEeccccccC
Q psy7343 358 GVMTAEGNLYN 368 (487)
Q Consensus 358 ~VmiGRa~l~~ 368 (487)
+|++||+++..
T Consensus 286 ~v~ig~~~l~~ 296 (352)
T PRK05437 286 AVGMAGPFLKA 296 (352)
T ss_pred EEEEhHHHHHH
Confidence 99999998864
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=161.53 Aligned_cols=207 Identities=22% Similarity=0.288 Sum_probs=146.5
Q ss_pred CCccccccccCCCchHH------HHHHHHhCCccceeccccchhhhcChhHHHHH--HhcCCCCCCeeeeeccC-----C
Q psy7343 148 SPRFILAPMVDASELPW------RLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI--LMSTPEDRPLIIQFCGN-----D 214 (487)
Q Consensus 148 ~~~~~lApma~~td~~f------r~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~--l~~~~~~~Pv~Vqi~g~-----d 214 (487)
+.|++.+||+|.++... ...+.+.|..++.. +..+.+.+++..... ++....+.|++++++.. +
T Consensus 53 ~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~G---s~~~~~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~ 129 (333)
T TIGR02151 53 KAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVG---SQRAALKDPETADTFEVVREEAPNGPLIANIGAPQLVEGG 129 (333)
T ss_pred cCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEc---CchhhccChhhHhHHHHHHHhCCCCcEEeecCchhhcccc
Confidence 67999999999985443 35777888655443 233345666654333 33445689999998742 2
Q ss_pred HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHH
Q psy7343 215 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294 (487)
Q Consensus 215 ~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~l 294 (487)
.+.+.+++++++ .|+++||++|++......+. .+++...+.++.+++.+++||++|.. + .....+.++.+
T Consensus 130 ~~~~~~~i~~i~--adal~i~ln~~q~~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~-g--~g~~~~~a~~L 199 (333)
T TIGR02151 130 PEEAQEAIDMIE--ADALAIHLNVLQELVQPEGD-----RNFKGWLEKIAEICSQLSVPVIVKEV-G--FGISKEVAKLL 199 (333)
T ss_pred HHHHHHHHHHhc--CCCEEEcCcccccccCCCCC-----cCHHHHHHHHHHHHHhcCCCEEEEec-C--CCCCHHHHHHH
Confidence 444555555553 68899999987765554432 24566778888899999999999963 2 12567899999
Q ss_pred HHcCCcEEEEEccccCC-------C--CCC--CCCCCH-----HHHHHHHh-hCCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 295 ERAGCQLLAVHGRTVDQ-------R--GMN--TGLASW-----EHITAVRK-ALTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~-------~--g~~--~g~~~~-----~~i~~i~~-~~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
+++|+|+|.|+||+... + ..+ ....+| +.+.++++ ..++|||++|||++.+|+.+++ ..|||
T Consensus 200 ~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaL-alGAd 278 (333)
T TIGR02151 200 ADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKAI-ALGAD 278 (333)
T ss_pred HHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHH-HhCCC
Confidence 99999999999875321 0 000 111234 56667776 5689999999999999999999 58999
Q ss_pred EEEeccccccC
Q psy7343 358 GVMTAEGNLYN 368 (487)
Q Consensus 358 ~VmiGRa~l~~ 368 (487)
+|++||+++..
T Consensus 279 ~V~igr~~L~~ 289 (333)
T TIGR02151 279 AVGMARPFLKA 289 (333)
T ss_pred eehhhHHHHHH
Confidence 99999998854
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=153.63 Aligned_cols=207 Identities=23% Similarity=0.299 Sum_probs=142.3
Q ss_pred CCccccccccCCCc------hHHHHHHHHhCCccceeccccchhhhcChhHHH--HHHhcCCCCCCeeeeecc-----CC
Q psy7343 148 SPRFILAPMVDASE------LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ--EILMSTPEDRPLIIQFCG-----ND 214 (487)
Q Consensus 148 ~~~~~lApma~~td------~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~--~~l~~~~~~~Pv~Vqi~g-----~d 214 (487)
+.|++.+||+|.+. ......+.+.|..++ ..+....+.+++... +.++....+.|++++++. .+
T Consensus 52 ~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~---~Gs~~~~~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~ 128 (326)
T cd02811 52 SAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMG---VGSQRAALEDPELAESFTVVREAPPNGPLIANLGAVQLNGYG 128 (326)
T ss_pred cCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeE---ecCchhhccChhhhhHHHHHHHhCCCceEEeecCccccCCCC
Confidence 67999999998872 334456666673221 122222345555442 233445556899998874 25
Q ss_pred HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHH
Q psy7343 215 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294 (487)
Q Consensus 215 ~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~l 294 (487)
++.+.++.+.++ .|+++||+++++....... ..|++.+.+.++.+++.+++||++|+.- .....+.++.+
T Consensus 129 ~~~~~~~i~~~~--adalel~l~~~q~~~~~~~-----~~df~~~~~~i~~l~~~~~vPVivK~~g---~g~s~~~a~~l 198 (326)
T cd02811 129 VEEARRAVEMIE--ADALAIHLNPLQEAVQPEG-----DRDFRGWLERIEELVKALSVPVIVKEVG---FGISRETAKRL 198 (326)
T ss_pred HHHHHHHHHhcC--CCcEEEeCcchHhhcCCCC-----CcCHHHHHHHHHHHHHhcCCCEEEEecC---CCCCHHHHHHH
Confidence 666666666663 6889999988765444332 2366667788888888899999999721 12457889999
Q ss_pred HHcCCcEEEEEccccCC-------CCCCC-----------CCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 295 ERAGCQLLAVHGRTVDQ-------RGMNT-----------GLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~-------~g~~~-----------g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
+++|+|+|.|+|+.... ++... +.+..+.+.++++.+ ++|||++|||++..|+.+++ ..|
T Consensus 199 ~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal-~lG 277 (326)
T cd02811 199 ADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIAKAL-ALG 277 (326)
T ss_pred HHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHH-HhC
Confidence 99999999998863210 11010 112235677777777 89999999999999999999 689
Q ss_pred CcEEEeccccccC
Q psy7343 356 VAGVMTAEGNLYN 368 (487)
Q Consensus 356 ad~VmiGRa~l~~ 368 (487)
||+|++||++|..
T Consensus 278 Ad~V~i~~~~L~~ 290 (326)
T cd02811 278 ADLVGMAGPFLKA 290 (326)
T ss_pred CCEEEEcHHHHHH
Confidence 9999999987754
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.1e-16 Score=155.91 Aligned_cols=166 Identities=25% Similarity=0.351 Sum_probs=125.4
Q ss_pred CCCeeeeeccCC---HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFCGND---SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d---~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
+.||++.+.+.+ .+++.+.++.++...|+||||++||+.. .+.....+++...++++.+++..++||++|+.
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~ 170 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREAVDIPVFVKLS 170 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhccCCCEEEEec
Confidence 579999999877 8899999998886699999999999642 13344567888999999999888999999995
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccc----------c--C---CCCCCCCCCC----HHHHHHHHhhCC--CcEEEc
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRT----------V--D---QRGMNTGLAS----WEHITAVRKALT--IPVIAN 338 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt----------~--~---~~g~~~g~~~----~~~i~~i~~~~~--iPVi~n 338 (487)
...+.....+.+..+.+.|+++|+...++ . . ..|+++|++. ...++++++.++ +|||++
T Consensus 171 p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~ 250 (295)
T PF01180_consen 171 PNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGV 250 (295)
T ss_dssp STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred CCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEe
Confidence 53233334555666668899999853321 1 1 1334677664 367888888887 999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEecccc-ccCcccccC
Q psy7343 339 GNIQCLADVEACLAQTGVAGVMTAEGN-LYNPALFTG 374 (487)
Q Consensus 339 GgI~s~~da~~~l~~~Gad~VmiGRa~-l~~P~lf~~ 374 (487)
|||.|.+|+.+++ ..||+.|++++++ +.+|+++.+
T Consensus 251 GGI~s~~da~e~l-~aGA~~Vqv~Sal~~~Gp~~~~~ 286 (295)
T PF01180_consen 251 GGIHSGEDAIEFL-MAGASAVQVCSALIYRGPGVIRR 286 (295)
T ss_dssp SS--SHHHHHHHH-HHTESEEEESHHHHHHGTTHHHH
T ss_pred CCcCCHHHHHHHH-HhCCCHheechhhhhcCcHHHHH
Confidence 9999999999999 7999999999999 557988873
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-15 Score=156.47 Aligned_cols=159 Identities=25% Similarity=0.371 Sum_probs=121.3
Q ss_pred HHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeeccc-
Q psy7343 216 KNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQ- 282 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~- 282 (487)
++|.++|++++++ ||+||||+++ |..|.+++.||+.+.++.+++.|++++||++++ .||.+++....
T Consensus 149 ~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~ 228 (341)
T PF00724_consen 149 EDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDF 228 (341)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCS
T ss_pred HHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecc
Confidence 6889999999888 9999999986 888999999999999999999999999999984 55666654421
Q ss_pred -----ccccHHHHHHHHHHcCCcEEEEEccc------cCCCCCC--CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHH
Q psy7343 283 -----DVNKTVEYARMLERAGCQLLAVHGRT------VDQRGMN--TGLASWEHITAVRKALTIPVIANGNIQCLADVEA 349 (487)
Q Consensus 283 -----d~~~~~e~a~~le~~G~d~I~VhgRt------~~~~g~~--~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~ 349 (487)
+.++..++++.+++.|+|.+.++.-. ....... ......+..+.+++.+++|||++|+|.+++.+++
T Consensus 229 ~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~ 308 (341)
T PF00724_consen 229 VEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEK 308 (341)
T ss_dssp STTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHH
Confidence 22455677899999999987653211 0111001 1112347788899999999999999999999999
Q ss_pred HHHhcCCcEEEeccccccCcccccC
Q psy7343 350 CLAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 350 ~l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
++++..||.|.+||++++||++.++
T Consensus 309 ~l~~g~~DlV~~gR~~ladPd~~~k 333 (341)
T PF00724_consen 309 ALEEGKADLVAMGRPLLADPDLPNK 333 (341)
T ss_dssp HHHTTSTSEEEESHHHHH-TTHHHH
T ss_pred HHhcCCceEeeccHHHHhCchHHHH
Confidence 9988889999999999999999764
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-14 Score=145.06 Aligned_cols=225 Identities=16% Similarity=0.112 Sum_probs=137.7
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+.++++|||.++|+.+||..+.++|+ +++.++.+. ...+..+++..|+.. ..+
T Consensus 47 ~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~---------------~~~~~~e~l~~qi~~-----~~~------ 100 (368)
T PRK08649 47 EIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLW---------------TRYEDPEPILDEIAS-----LGK------ 100 (368)
T ss_pred cCcEeccCCcccCCHHHHHHHHhCCCceEEeecccc---------------ccCCCHHHHHHHHHh-----cCc------
Confidence 55899999999999999999999998 777733332 223345567777521 111
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN 235 (487)
..+....++.+.. | .+++...++++..... .|.++++- ++.+..+.++.+.++ .|.|
T Consensus 101 -----~~~~~~~~~~~~~----P--------~~p~l~~~iv~~~~~~-~V~v~vr~-~~~~~~e~a~~l~eaGvd~I--- 158 (368)
T PRK08649 101 -----DEATRLMQELYAE----P--------IKPELITERIAEIRDA-GVIVAVSL-SPQRAQELAPTVVEAGVDLF--- 158 (368)
T ss_pred -----HHHHHHHHHhhcC----C--------CCHHHHHHHHHHHHhC-eEEEEEec-CCcCHHHHHHHHHHCCCCEE---
Confidence 0111223333211 1 4555666666422211 35566654 344566777766666 4444
Q ss_pred cCCCcceeeccCccccc---c-CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC
Q psy7343 236 IGCPQMVAKRGHYGAYL---Q-DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l---~-~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~ 311 (487)
+.|+|+..+. . .+|..+.++++. .++||++. ++.+..++ +.+.++|||+|++ ||....
T Consensus 159 -------~vhgrt~~~~h~~~~~~~~~i~~~ik~----~~ipVIaG-----~V~t~e~A-~~l~~aGAD~V~V-G~G~Gs 220 (368)
T PRK08649 159 -------VIQGTVVSAEHVSKEGEPLNLKEFIYE----LDVPVIVG-----GCVTYTTA-LHLMRTGAAGVLV-GIGPGA 220 (368)
T ss_pred -------EEeccchhhhccCCcCCHHHHHHHHHH----CCCCEEEe-----CCCCHHHH-HHHHHcCCCEEEE-CCCCCc
Confidence 4444433222 1 257666555443 58999983 55555544 5555699999999 775421
Q ss_pred C---CCCC--CCCCHHHHHHHHhh-------C---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 312 R---GMNT--GLASWEHITAVRKA-------L---TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 312 ~---g~~~--g~~~~~~i~~i~~~-------~---~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
. .... |.+....+.++.+. . ++|||+.|||.+..|+.+.+ ..|||+||+|+.+..-.
T Consensus 221 ~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAl-alGAd~Vm~Gs~fa~t~ 292 (368)
T PRK08649 221 ACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAI-ACGADAVMLGSPLARAA 292 (368)
T ss_pred CCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHH-HcCCCeecccchhcccc
Confidence 0 0011 23344455554332 1 59999999999999999999 79999999999988753
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=147.77 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=120.9
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccCc-EEEEeecccc
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP-VSCKIRIYQD 283 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iP-V~vKiR~~~d 283 (487)
.++|+++|++++++ ||+||||+++ |..|.+.+.||+.+.++.+++.||+++||++++-. |.+++....+
T Consensus 164 i~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~ 243 (391)
T PLN02411 164 VEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAID 243 (391)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEccccc
Confidence 36789999999887 9999999886 88899999999999999999999999999998533 4444432111
Q ss_pred ---------cccHHHHHHHHHHc------CCcEEEEEccccCCCC----CCCCC-CCH-HHHHHHHhhCCCcEEEcCCCC
Q psy7343 284 ---------VNKTVEYARMLERA------GCQLLAVHGRTVDQRG----MNTGL-ASW-EHITAVRKALTIPVIANGNIQ 342 (487)
Q Consensus 284 ---------~~~~~e~a~~le~~------G~d~I~VhgRt~~~~g----~~~g~-~~~-~~i~~i~~~~~iPVi~nGgI~ 342 (487)
.++..++++.+++. |+|.|.|......... ...+. ..+ ...+++++.+++||+++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i- 322 (391)
T PLN02411 244 HLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF- 322 (391)
T ss_pred ccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-
Confidence 12346677777763 5999999643221100 00111 112 45688999999999999999
Q ss_pred CHHHHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 343 CLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+.+++++++++..||.|.+||++++||+|..+.
T Consensus 323 ~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 323 TRELGMQAVQQGDADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred CHHHHHHHHHcCCCCEEEECHHHHhCccHHHHH
Confidence 579999999666699999999999999997654
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-14 Score=138.08 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=100.3
Q ss_pred ccccccCChHHHHHHHHHHhhhcc--CcE---EEEeecccc--cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC
Q psy7343 248 YGAYLQDDWPLLTNLVSSLRQAVQ--VPV---SCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320 (487)
Q Consensus 248 ~G~~l~~d~~~i~eiv~~v~~~~~--iPV---~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~ 320 (487)
.|+.+..||+++.++++.+.+.+. +++ .++++ ||+ ..+..++++.+++.|++.|++|+|++.+. ++|+ +
T Consensus 103 iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~--~~G~-d 178 (241)
T PRK14024 103 IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGT--LTGP-N 178 (241)
T ss_pred ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCC--ccCC-C
Confidence 377788999999999998876653 344 33332 553 23678999999999999999999999887 7775 9
Q ss_pred HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH--hcCCcEEEeccccccCccc
Q psy7343 321 WEHITAVRKALTIPVIANGNIQCLADVEACLA--QTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 321 ~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~--~~Gad~VmiGRa~l~~P~l 371 (487)
|+.++++++.+++||++||||+|.+|+.++.+ .+|||+||+||+++.++.-
T Consensus 179 ~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~ 231 (241)
T PRK14024 179 LELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFT 231 (241)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCC
Confidence 99999999999999999999999999999863 4699999999999998643
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.7e-13 Score=129.68 Aligned_cols=187 Identities=23% Similarity=0.286 Sum_probs=129.1
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCH-HHHHHHHHhh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS-KNLTEAAKLA 225 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~-~~~~~aa~~~ 225 (487)
..|+++|||+++++..++..+.+.|+ +++.+++++.+.+....+...+ .. +.|+.+++..+++ ....+.++.+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~---~~--~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRA---LT--DKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHH---hc--CCCeEEeEecCCCCcCHHHHHHHH
Confidence 35889999999999999988888875 6665566654443332222211 11 4578899887653 2344555555
Q ss_pred CCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 226 EPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 226 ~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
.+. .|+|.++.+.+ .+ +++.+++ .+++++.++ ...+.++.+.+.|+|+|.+
T Consensus 77 ~~~g~d~v~l~~~~~----------------~~----~~~~~~~-~~i~~i~~v-------~~~~~~~~~~~~gad~i~~ 128 (236)
T cd04730 77 LEEGVPVVSFSFGPP----------------AE----VVERLKA-AGIKVIPTV-------TSVEEARKAEAAGADALVA 128 (236)
T ss_pred HhCCCCEEEEcCCCC----------------HH----HHHHHHH-cCCEEEEeC-------CCHHHHHHHHHcCCCEEEE
Confidence 554 78887765521 12 2333333 367887775 2235566777899999999
Q ss_pred EccccCCCCCCCCC---CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 305 HGRTVDQRGMNTGL---ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 305 hgRt~~~~g~~~g~---~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+++.... ..+. ..++.++++++.+++||+++|||.+++++.+++ ..|+|+|++|++++..+..
T Consensus 129 ~~~~~~G---~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l-~~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 129 QGAEAGG---HRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAAL-ALGADGVQMGTRFLATEES 194 (236)
T ss_pred eCcCCCC---CCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH-HcCCcEEEEchhhhcCccc
Confidence 8873321 2222 357899999999999999999999999999999 6899999999999887754
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.7e-13 Score=133.14 Aligned_cols=184 Identities=18% Similarity=0.180 Sum_probs=123.8
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHh--cCCCCCCeeeeeccCCHHHHHHHHHh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILM--STPEDRPLIIQFCGNDSKNLTEAAKL 224 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g~d~~~~~~aa~~ 224 (487)
+.|++++||.++++..+-....+.|. ++..... ..++..++.++ +...+.|+.+++....+. +.+..+.
T Consensus 11 ~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~-------~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~-~~~~~~~ 82 (307)
T TIGR03151 11 EYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGN-------APPDVVRKEIRKVKELTDKPFGVNIMLLSPF-VDELVDL 82 (307)
T ss_pred CCCEEcCCCCCCCCHHHHHHHHhCCCcceecccc-------CCHHHHHHHHHHHHHhcCCCcEEeeecCCCC-HHHHHHH
Confidence 57999999999999887765566553 4433211 12333333332 122367999998743322 2233333
Q ss_pred -hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 225 -AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 225 -~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
++...+.|.++.|. ++ ++++.+++. ++.|+..+ ...+.++.+++.|+|.|.
T Consensus 83 ~~~~~v~~v~~~~g~-----------------p~---~~i~~lk~~-g~~v~~~v-------~s~~~a~~a~~~GaD~Iv 134 (307)
T TIGR03151 83 VIEEKVPVVTTGAGN-----------------PG---KYIPRLKEN-GVKVIPVV-------ASVALAKRMEKAGADAVI 134 (307)
T ss_pred HHhCCCCEEEEcCCC-----------------cH---HHHHHHHHc-CCEEEEEc-------CCHHHHHHHHHcCCCEEE
Confidence 33334444443332 22 345556554 77887765 446778899999999999
Q ss_pred EEccccCCCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 304 VHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 304 VhgRt~~~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+||+... ++.| ..+++.++++++.+++|||++|||.+.+++.+++ ..|||+|++|+.++.-+.-
T Consensus 135 v~g~eag---Gh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al-~~GA~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 135 AEGMESG---GHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAF-ALGAEAVQMGTRFLCAKEC 199 (307)
T ss_pred EECcccC---CCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH-HcCCCEeecchHHhccccc
Confidence 9999433 2333 3478999999999999999999999999999999 5999999999987776543
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=138.69 Aligned_cols=170 Identities=19% Similarity=0.264 Sum_probs=126.7
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAE 226 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~ 226 (487)
+.|++++||.++++.+++....++|+ ++.. +.+|. .......|+..||++.++ .++++.++
T Consensus 47 ~~Piv~a~M~gVt~~~la~avs~~GglGvl~-----~~gl~----------~~~~~~e~l~~qi~~~~~---~~~~~~~~ 108 (368)
T PRK08649 47 EIPIIASPMDAVVSPETAIELGKLGGLGVLN-----LEGLW----------TRYEDPEPILDEIASLGK---DEATRLMQ 108 (368)
T ss_pred cCcEeccCCcccCCHHHHHHHHhCCCceEEe-----ecccc----------ccCCCHHHHHHHHHhcCc---HHHHHHHH
Confidence 67999999999999999999999886 5533 22222 011112344555655444 33444444
Q ss_pred CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEc
Q psy7343 227 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG 306 (487)
Q Consensus 227 ~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vhg 306 (487)
+.. .-| .+++++.++++++++. + |.+++|+ +..+..+.++.+.++|+|.|++||
T Consensus 109 ~~~-------~~P--------------~~p~l~~~iv~~~~~~-~--V~v~vr~--~~~~~~e~a~~l~eaGvd~I~vhg 162 (368)
T PRK08649 109 ELY-------AEP--------------IKPELITERIAEIRDA-G--VIVAVSL--SPQRAQELAPTVVEAGVDLFVIQG 162 (368)
T ss_pred Hhh-------cCC--------------CCHHHHHHHHHHHHhC-e--EEEEEec--CCcCHHHHHHHHHHCCCCEEEEec
Confidence 431 012 3699999999999986 4 5556655 345688999999999999999999
Q ss_pred cccCCCCCCCCCC-CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 307 RTVDQRGMNTGLA-SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 307 Rt~~~~g~~~g~~-~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
||..+. |.+.. +|..+.++++..++|||+ |+|.|.+++++++ ++|||+|++|++-
T Consensus 163 rt~~~~--h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~-~aGAD~V~VG~G~ 218 (368)
T PRK08649 163 TVVSAE--HVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLM-RTGAAGVLVGIGP 218 (368)
T ss_pred cchhhh--ccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEEECCCC
Confidence 998887 66655 788888888888999999 8999999999999 5999999999875
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-14 Score=146.35 Aligned_cols=152 Identities=25% Similarity=0.392 Sum_probs=120.8
Q ss_pred eeeeeccccCCCCCccccccccCC-CchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCC-CCCee
Q psy7343 136 LIIQRTIFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPE-DRPLI 207 (487)
Q Consensus 136 ~~vQl~~~~~~g~~~~~lApma~~-td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~-~~Pv~ 207 (487)
+++|++ |+.|..++..+.. .+..+..|+.|+| ||++.|. |++|+++++.+.++++. ... +.||+
T Consensus 69 ~~vQl~-----gsdp~~l~eaA~~~~~~g~~~IdlN~G---CP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVT 140 (323)
T COG0042 69 VAVQLG-----GSDPELLAEAAKIAEELGADIIDLNCG---CPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVT 140 (323)
T ss_pred EEEEec-----CCCHHHHHHHHHHHHhcCCCEEeeeCC---CChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeE
Confidence 899974 4455555555433 3455678899999 9999886 88999999999999862 333 58999
Q ss_pred eeec-cCCHHH--HHHHHHhhCCcCcEEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhcc-CcEEEEeec
Q psy7343 208 IQFC-GNDSKN--LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQ-VPVSCKIRI 280 (487)
Q Consensus 208 Vqi~-g~d~~~--~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~-iPV~vKiR~ 280 (487)
||+| |.|.++ ..++++.++++ || ..+++|+|+..+. ..||+.+.+ +++.++ +||++|+
T Consensus 141 VKiRlG~d~~~~~~~~ia~~~~~~--------g~-~~ltVHgRtr~~~y~~~ad~~~I~~----vk~~~~~ipvi~NG-- 205 (323)
T COG0042 141 VKIRLGWDDDDILALEIARILEDA--------GA-DALTVHGRTRAQGYLGPADWDYIKE----LKEAVPSIPVIANG-- 205 (323)
T ss_pred EEEecccCcccccHHHHHHHHHhc--------CC-CEEEEecccHHhcCCCccCHHHHHH----HHHhCCCCeEEeCC--
Confidence 9999 776655 67899999998 78 7899999987765 357888777 455555 9999998
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCC
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g 313 (487)
|+.+..++.+.++.+|+|+||| ||.....+
T Consensus 206 --dI~s~~~a~~~l~~tg~DgVMi-gRga~~nP 235 (323)
T COG0042 206 --DIKSLEDAKEMLEYTGADGVMI-GRGALGNP 235 (323)
T ss_pred --CcCCHHHHHHHHHhhCCCEEEE-cHHHccCC
Confidence 9999999999999999999999 99765543
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.9e-12 Score=127.44 Aligned_cols=251 Identities=19% Similarity=0.220 Sum_probs=157.1
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhhhc-ChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLA 225 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~-~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~ 225 (487)
+.|++.++|...++..+..++++.|.-- .+.+ +++...+..+.... ..+.|.+. +.+++++.++.+++
T Consensus 37 ~~P~~inAM~t~iN~~LA~~a~~~G~~~---------~~~k~~~e~~~~~~r~~~~-~~l~v~~~vg~~~~~~~~~~~Lv 106 (326)
T PRK05458 37 KLPVVPANMQTIIDEKIAEWLAENGYFY---------IMHRFDPEARIPFIKDMHE-QGLIASISVGVKDDEYDFVDQLA 106 (326)
T ss_pred cCcEEEecccchhHHHHHHHHHHcCCEE---------EEecCCHHHHHHHHHhccc-cccEEEEEecCCHHHHHHHHHHH
Confidence 5699999997555656667777777311 1233 55555555543322 23456655 45677788888888
Q ss_pred CCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEE
Q psy7343 226 EPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLL 302 (487)
Q Consensus 226 ~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I 302 (487)
+.. .|.|.|....+ +-+.+.++++.+++..+ +||+++ ++. ..+.++.+.++|+|+|
T Consensus 107 ~ag~~~d~i~iD~a~g---------------h~~~~~e~I~~ir~~~p~~~vi~g-----~V~-t~e~a~~l~~aGad~i 165 (326)
T PRK05458 107 AEGLTPEYITIDIAHG---------------HSDSVINMIQHIKKHLPETFVIAG-----NVG-TPEAVRELENAGADAT 165 (326)
T ss_pred hcCCCCCEEEEECCCC---------------chHHHHHHHHHHHhhCCCCeEEEE-----ecC-CHHHHHHHHHcCcCEE
Confidence 774 48777764441 34567778888998885 788875 343 4566788899999999
Q ss_pred EEE---ccccCCC-CCCCCCCCHH--HHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC
Q psy7343 303 AVH---GRTVDQR-GMNTGLASWE--HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 303 ~Vh---gRt~~~~-g~~~g~~~~~--~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
.++ ||...+. ..-.+.++|. .++++++.+++|||++|||.++.|+.+++ ..|||+||+|+.++....=-.+.-
T Consensus 166 ~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaL-a~GA~aV~vG~~~~~~~espg~~~ 244 (326)
T PRK05458 166 KVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSI-RFGATMVMIGSLFAGHEESPGKTV 244 (326)
T ss_pred EECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH-HhCCCEEEechhhcCCccCCCcee
Confidence 985 2221111 0122456775 58899988899999999999999999999 679999999998875322111000
Q ss_pred CCcHHHHHHHHHHHHHcC-------hh---HHHHHHHHHHHhHhhcCCCCcHHHHHHHHh--cCCHHHHHH
Q psy7343 377 RPAWELASEYLDLVAQYP-------VR---LQYARGHVFNMCHHLLTLPENSDVRLLVGK--TNHIKDLRK 435 (487)
Q Consensus 377 ~~~~~~~~~~l~~~~~~~-------~~---~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~--~~~~~~~~~ 435 (487)
...-+..++|+....+|. ++ ....|+|+.+++..+ ...+|..+.. ++|++|+++
T Consensus 245 ~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l-----~~gLr~~m~~~Ga~~i~el~~ 310 (326)
T PRK05458 245 EIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTLTEM-----EQDLQSSISYAGGRDLDAIRK 310 (326)
T ss_pred eecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHHHHHH-----HHHHHHHHHHhCCCCHHHHhc
Confidence 001123344443333332 11 123456776665432 2466666644 467877664
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-13 Score=138.09 Aligned_cols=216 Identities=19% Similarity=0.203 Sum_probs=144.5
Q ss_pred CCceEEec-CCCCCCHHHHHHHHHcCCCeEEc---------------------cceeccccccC-cHHHHHHhhhCC--C
Q psy7343 78 SPRFILAP-MVDASELPWRLLSRRYGSHLCYT---------------------PMVSAHQFIAD-KKLRQEILMSTP--E 132 (487)
Q Consensus 78 ~~~~~LAP-Mag~td~pFR~l~~~~Gadl~~T---------------------EMi~a~~l~~~-~~~~~~~~~~~~--~ 132 (487)
++++++|| |.|+|+.+||.+++. |++.++| +|+++.++... .+...+.+.... .
T Consensus 11 ~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~ 89 (300)
T TIGR01037 11 KNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEF 89 (300)
T ss_pred CCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccC
Confidence 66899999 589999999998876 9999999 89999999763 334344443322 3
Q ss_pred CCceeeeeccccCCCCCccccccccC-CCch-H-HHHHHHHhCCccceeccccchhhhcChhHHHHHHhc--CCCCCCee
Q psy7343 133 DRPLIIQRTIFPRLGSPRFILAPMVD-ASEL-P-WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPEDRPLI 207 (487)
Q Consensus 133 e~p~~vQl~~~~~~g~~~~~lApma~-~td~-~-fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~--~~~~~Pv~ 207 (487)
+.|+++|+++. ++..+ +.++. +.+. + +..+..|+| ||.....+..+..+++...++++. ...+.||+
T Consensus 90 ~~pl~~qi~g~----~~~~~-~~~a~~~~~~~~~~d~ielN~~---cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~ 161 (300)
T TIGR01037 90 PTPLIASVYGS----SVEEF-AEVAEKLEKAPPYVDAYELNLS---CPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVF 161 (300)
T ss_pred CCcEEEEeecC----CHHHH-HHHHHHHHhccCccCEEEEECC---CCCCCCCccccccCHHHHHHHHHHHHHhcCCCEE
Confidence 45999997432 22211 11111 1111 0 233455667 776666677888999888888862 23468999
Q ss_pred eeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCc-ceeec-------cCccc-cccCChHHHHHHHHHHhhhccCcEEEE
Q psy7343 208 IQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQ-MVAKR-------GHYGA-YLQDDWPLLTNLVSSLRQAVQVPVSCK 277 (487)
Q Consensus 208 Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~-~i~~~-------gr~G~-~l~~d~~~i~eiv~~v~~~~~iPV~vK 277 (487)
||+.. +.++..++++.++++ .|+|.++.+-+. ....+ ...|+ .....+....+.+..+++.+++||+++
T Consensus 162 vKi~~-~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~ 240 (300)
T TIGR01037 162 AKLSP-NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGV 240 (300)
T ss_pred EECCC-ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEE
Confidence 99985 445778888888776 899988643211 00000 01111 112234445567777888889999999
Q ss_pred eecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 278 IRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 278 iR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
+ ++.+..++.+.++ +|||+|++ ||..
T Consensus 241 G----GI~s~~da~~~l~-~GAd~V~i-gr~~ 266 (300)
T TIGR01037 241 G----GITSFEDALEFLM-AGASAVQV-GTAV 266 (300)
T ss_pred C----CCCCHHHHHHHHH-cCCCceee-cHHH
Confidence 8 7888899988886 89999999 8854
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-13 Score=130.05 Aligned_cols=157 Identities=25% Similarity=0.294 Sum_probs=116.1
Q ss_pred HHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHc
Q psy7343 219 TEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERA 297 (487)
Q Consensus 219 ~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~ 297 (487)
.+.|++++++ ++.|.+|.|||+.+...| |..++++|+.+.+ +++.+++||++|.|++. ...++.|+++
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~a----Ik~~V~iPVigk~Righ-----~~Ea~~L~~~ 95 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIEE----IMDAVSIPVMAKARIGH-----FVEAQILEAL 95 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHHH----HHHhCCCCeEEeehhhH-----HHHHHHHHHc
Confidence 4678888887 999999999999877766 7888999998885 66678999999998863 4445556666
Q ss_pred CCcEEEEEc-----------------------------------------cccCC----------------------CCC
Q psy7343 298 GCQLLAVHG-----------------------------------------RTVDQ----------------------RGM 314 (487)
Q Consensus 298 G~d~I~Vhg-----------------------------------------Rt~~~----------------------~g~ 314 (487)
|+|.|.-+- ||..+ ..+
T Consensus 96 GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~g 175 (293)
T PRK04180 96 GVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTS 175 (293)
T ss_pred CCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 666653211 11100 000
Q ss_pred CC----------CCCCHHHHHHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHH
Q psy7343 315 NT----------GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWEL 382 (487)
Q Consensus 315 ~~----------g~~~~~~i~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~ 382 (487)
|+ -.++|+.++++++..++||+ +.|||.|++++..++ +.|||+|++|++++..+.. .+.
T Consensus 176 yt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vm-e~GAdgVaVGSaI~ks~dP--------~~~ 246 (293)
T PRK04180 176 MSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMM-QLGADGVFVGSGIFKSGDP--------EKR 246 (293)
T ss_pred CCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHH-HhCCCEEEEcHHhhcCCCH--------HHH
Confidence 11 23578999999999999998 999999999999999 6999999999998854322 244
Q ss_pred HHHHHHHHHHcCh
Q psy7343 383 ASEYLDLVAQYPV 395 (487)
Q Consensus 383 ~~~~l~~~~~~~~ 395 (487)
.+.+.+.+..|.+
T Consensus 247 akafv~ai~~~~~ 259 (293)
T PRK04180 247 ARAIVEATTHYDD 259 (293)
T ss_pred HHHHHHHHHHcCC
Confidence 5666677777754
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-12 Score=124.90 Aligned_cols=144 Identities=22% Similarity=0.282 Sum_probs=109.9
Q ss_pred eeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc------
Q psy7343 208 IQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY------ 281 (487)
Q Consensus 208 Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~------ 281 (487)
+++.| ....+.++.+++...++.|.|| +.+..+++.+.++++...+. .+.+++++|.+
T Consensus 77 v~~gG-Gi~s~~d~~~l~~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~ 140 (258)
T PRK01033 77 LCYGG-GIKTLEQAKKIFSLGVEKVSIN--------------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFD 140 (258)
T ss_pred EEECC-CCCCHHHHHHHHHCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEE
Confidence 45554 3334445555554345566555 33456899999988877422 25677776644
Q ss_pred -----c---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 282 -----Q---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 282 -----~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
| ...+..++++.+++.|++.+.+|++++.+. +.| .+|+.++++++.+++|||++|||.|.+|+.++++.
T Consensus 141 v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~--~~G-~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~ 217 (258)
T PRK01033 141 VYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGT--MKG-YDLELLKSFRNALKIPLIALGGAGSLDDIVEAILN 217 (258)
T ss_pred EEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCC--cCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 1 123678999999999999999999998876 677 59999999999999999999999999999999977
Q ss_pred cCCcEEEeccccccCcc
Q psy7343 354 TGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~ 370 (487)
+|||+|++|+++...-+
T Consensus 218 ~GvdgVivg~a~~~~~~ 234 (258)
T PRK01033 218 LGADAAAAGSLFVFKGV 234 (258)
T ss_pred CCCCEEEEcceeeeCcc
Confidence 99999999999887633
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-13 Score=129.01 Aligned_cols=193 Identities=14% Similarity=0.174 Sum_probs=125.9
Q ss_pred CCCCCCHHHHHHHHHcCCCeEEccceeccccccCc--------------------HHHHHHhhhCCCCCceeeeeccccC
Q psy7343 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK--------------------KLRQEILMSTPEDRPLIIQRTIFPR 145 (487)
Q Consensus 86 Mag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~--------------------~~~~~~~~~~~~e~p~~vQl~~~~~ 145 (487)
|+|+||..|.+-.+.+ +++++---++.+.-.+.. ....+.+....+..|+++|+...
T Consensus 1 mag~~d~~~~~~~~~~-~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~~~~~vivnv~~~-- 77 (231)
T TIGR00736 1 MAGITDAEFCRKFKDL-FAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAESRALVSVNVRFV-- 77 (231)
T ss_pred CCCcchHHHHHhcCcC-cCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHhhcCCEEEEEecC--
Confidence 8999999987776654 777776665544332111 11111222223456899997532
Q ss_pred CCCCccc--cccccCCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc-CCCCCCeeeeecc-CCHHH
Q psy7343 146 LGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS-TPEDRPLIIQFCG-NDSKN 217 (487)
Q Consensus 146 ~g~~~~~--lApma~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~-~~~~~Pv~Vqi~g-~d~~~ 217 (487)
++..+ ++++. .+ .+..+..|+| ||.+.+. |++|+++++.+.++++. ...+.||+|||+. .+..+
T Consensus 78 --~~ee~~~~a~~v--~~-~~d~IdiN~g---CP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~ 149 (231)
T TIGR00736 78 --DLEEAYDVLLTI--AE-HADIIEINAH---CRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLD 149 (231)
T ss_pred --CHHHHHHHHHHH--hc-CCCEEEEECC---CCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcch
Confidence 22111 11111 11 1233556788 8887664 78899999999988862 2347899999994 45567
Q ss_pred HHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHH
Q psy7343 218 LTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLE 295 (487)
Q Consensus 218 ~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le 295 (487)
..++++.++++ +|+|-++.. +.+.-..+|+.+.+ +++.+ ++||++|+ ++.+.+++.++++
T Consensus 150 ~~~~a~~l~~aGad~i~Vd~~----------~~g~~~a~~~~I~~----i~~~~~~ipIIgNG----gI~s~eda~e~l~ 211 (231)
T TIGR00736 150 ELIDALNLVDDGFDGIHVDAM----------YPGKPYADMDLLKI----LSEEFNDKIIIGNN----SIDDIESAKEMLK 211 (231)
T ss_pred HHHHHHHHHHcCCCEEEEeeC----------CCCCchhhHHHHHH----HHHhcCCCcEEEEC----CcCCHHHHHHHHH
Confidence 78899988887 777766532 22111146766665 55566 49999998 9999999999998
Q ss_pred HcCCcEEEEEcccc
Q psy7343 296 RAGCQLLAVHGRTV 309 (487)
Q Consensus 296 ~~G~d~I~VhgRt~ 309 (487)
+|||+||| ||..
T Consensus 212 -~GAd~Vmv-gR~~ 223 (231)
T TIGR00736 212 -AGADFVSV-ARAI 223 (231)
T ss_pred -hCCCeEEE-cHhh
Confidence 89999999 8843
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=125.21 Aligned_cols=199 Identities=18% Similarity=0.170 Sum_probs=132.5
Q ss_pred CCccccccccCCC------chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeecc-CCHHHHHH
Q psy7343 148 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG-NDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~t------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g-~d~~~~~~ 220 (487)
+.|+++||++... +....+.+.+.|... +.+..-... .+++... ..+.|...|+.- .|.+...+
T Consensus 80 ~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~-----~lSt~ss~s---lEev~~~-~~~~~~wfQlY~~~dr~~~~~ 150 (367)
T TIGR02708 80 KSPFIMAPVAAHKLANEQGEVATARGVSEFGSIY-----TTSSYSTAD---LPEISEA-LNGTPHWFQFYMSKDDGINRD 150 (367)
T ss_pred ccccccCcHHHhhccCCcHHHHHHHHHHHcCCCe-----eecccccCC---HHHHHhh-cCCCceEEEEeccCCHHHHHH
Confidence 7799999987331 233345566666433 322211111 3333322 224589999984 56666678
Q ss_pred HHHhhCCc-CcEEEeecCCCcce-----ee-----------------ccCcc------cc--ccCChHHHHHHHHHHhhh
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMV-----AK-----------------RGHYG------AY--LQDDWPLLTNLVSSLRQA 269 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i-----~~-----------------~gr~G------~~--l~~d~~~i~eiv~~v~~~ 269 (487)
..++++++ +.+|=+....|..- .+ ++... .. -.-+|+. ++++++.
T Consensus 151 li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~----i~~l~~~ 226 (367)
T TIGR02708 151 IMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRD----IEEIAGY 226 (367)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHH----HHHHHHh
Confidence 88888877 78877766665310 00 01000 00 0123444 5557777
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHH
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADV 347 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da 347 (487)
+++||++|+ +. ..+.++.+.++|+|+|.|++....|. +.+++.|+.+.++++.+ ++|||++|||++..|+
T Consensus 227 ~~~PvivKG-----v~-~~eda~~a~~~Gvd~I~VS~HGGrq~--~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv 298 (367)
T TIGR02708 227 SGLPVYVKG-----PQ-CPEDADRALKAGASGIWVTNHGGRQL--DGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHV 298 (367)
T ss_pred cCCCEEEeC-----CC-CHHHHHHHHHcCcCEEEECCcCccCC--CCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHH
Confidence 899999995 22 36778888999999998855444454 56788899999999887 4999999999999999
Q ss_pred HHHHHhcCCcEEEeccccccC
Q psy7343 348 EACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.+++ ..|||+|||||+++.-
T Consensus 299 ~KaL-alGAd~V~igR~~l~~ 318 (367)
T TIGR02708 299 FKAL-ASGADLVALGRPVIYG 318 (367)
T ss_pred HHHH-HcCCCEEEEcHHHHHH
Confidence 9999 5999999999976653
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-11 Score=122.75 Aligned_cols=189 Identities=23% Similarity=0.232 Sum_probs=125.3
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAE 226 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~ 226 (487)
+.|++.+||.++++..+.....+.|. ++....+ ..+...+.++.... ...+....+.+++....+..+++
T Consensus 34 ~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~--------~~~~~~~~i~~vk~-~l~v~~~~~~~~~~~~~~~~l~e 104 (325)
T cd00381 34 NIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNM--------SIEEQAEEVRKVKG-RLLVGAAVGTREDDKERAEALVE 104 (325)
T ss_pred CCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCC--------CHHHHHHHHHHhcc-CceEEEecCCChhHHHHHHHHHh
Confidence 67999999999999998865556553 5544322 11222333332222 22222223445555555555666
Q ss_pred CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEE
Q psy7343 227 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVH 305 (487)
Q Consensus 227 ~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vh 305 (487)
...+.|+++++. | +.+...++++.+++..+ +||++. ++ ...+.++.+.++|+|+|.|+
T Consensus 105 agv~~I~vd~~~-------G--------~~~~~~~~i~~ik~~~p~v~Vi~G-----~v-~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 105 AGVDVIVIDSAH-------G--------HSVYVIEMIKFIKKKYPNVDVIAG-----NV-VTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred cCCCEEEEECCC-------C--------CcHHHHHHHHHHHHHCCCceEEEC-----CC-CCHHHHHHHHhcCCCEEEEC
Confidence 558888887643 1 22455667777887653 677761 33 44566788889999999985
Q ss_pred cc------ccCCCCCCCCCCCHHHHHHHHhhC---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 306 GR------TVDQRGMNTGLASWEHITAVRKAL---TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 306 gR------t~~~~g~~~g~~~~~~i~~i~~~~---~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
+. ++... ..+.+.+..+.++.+.. ++|||++|||.+..|+.+++ ..|||+||+|+.+....
T Consensus 164 ~g~G~~~~t~~~~--g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAl-a~GA~~VmiGt~fa~t~ 233 (325)
T cd00381 164 IGPGSICTTRIVT--GVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKAL-AAGADAVMLGSLLAGTD 233 (325)
T ss_pred CCCCcCcccceeC--CCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH-HcCCCEEEecchhcccc
Confidence 32 22222 23567787777776654 69999999999999999999 69999999999998865
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=126.70 Aligned_cols=215 Identities=16% Similarity=0.147 Sum_probs=136.1
Q ss_pred ceeeeeccccCCCCCccccccccCC--Cc----hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeee
Q psy7343 135 PLIIQRTIFPRLGSPRFILAPMVDA--SE----LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208 (487)
Q Consensus 135 p~~vQl~~~~~~g~~~~~lApma~~--td----~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~V 208 (487)
.+.+++ ++..-+.|++++||... .. ....+.+.+.|...+.+-. + .. -.+++.... .+.+...
T Consensus 61 d~~t~~--lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~--s---~~---s~Eei~~~~-~~~~~wf 129 (351)
T cd04737 61 DTSTEL--LGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTY--S---NT---SLEEIAKAS-NGGPKWF 129 (351)
T ss_pred CCceEe--CCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCC--C---CC---CHHHHHHhc-CCCCeEE
Confidence 344553 43223779999999733 11 2233455555643332211 1 11 133333322 2458999
Q ss_pred eec-cCCHHHHHHHHHhhCCc-CcEEEeecCCCcc--eeeccC--------------------ccccc-----cCChHHH
Q psy7343 209 QFC-GNDSKNLTEAAKLAEPH-CDGIDINIGCPQM--VAKRGH--------------------YGAYL-----QDDWPLL 259 (487)
Q Consensus 209 qi~-g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~--i~~~gr--------------------~G~~l-----~~d~~~i 259 (487)
|+. ..|.+...+..++++++ +.+|-+....|.. ....-+ .+... .-++...
T Consensus 130 QlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (351)
T cd04737 130 QLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLS 209 (351)
T ss_pred EEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCC
Confidence 998 45777777888888776 7777776655431 000000 00000 0011223
Q ss_pred HHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEE
Q psy7343 260 TNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA 337 (487)
Q Consensus 260 ~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~ 337 (487)
.+.++++++.+++||++|+ + ...+.++.+.++|+|+|.|++....+. +.+++.++.+.++++.+ ++|||+
T Consensus 210 ~~~l~~lr~~~~~PvivKg-----v-~~~~dA~~a~~~G~d~I~vsnhGGr~l--d~~~~~~~~l~~i~~a~~~~i~vi~ 281 (351)
T cd04737 210 PADIEFIAKISGLPVIVKG-----I-QSPEDADVAINAGADGIWVSNHGGRQL--DGGPASFDSLPEIAEAVNHRVPIIF 281 (351)
T ss_pred HHHHHHHHHHhCCcEEEec-----C-CCHHHHHHHHHcCCCEEEEeCCCCccC--CCCchHHHHHHHHHHHhCCCCeEEE
Confidence 3555667878899999995 2 345677889999999999943332332 45667789999998888 699999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
+|||++..|+.+++ ..|||+||+||+++...
T Consensus 282 dGGIr~g~Di~kaL-alGA~~V~iGr~~l~~l 312 (351)
T cd04737 282 DSGVRRGEHVFKAL-ASGADAVAVGRPVLYGL 312 (351)
T ss_pred ECCCCCHHHHHHHH-HcCCCEEEECHHHHHHH
Confidence 99999999999999 69999999999877653
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=116.80 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=94.9
Q ss_pred ccccccCChHHHHHHHHHHhhhccCcEEEEee----ccc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC
Q psy7343 248 YGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR----IYQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320 (487)
Q Consensus 248 ~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR----~~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~ 320 (487)
.|+.+..+++.+.++.+...+.+.+++.+|.+ .+| ...+..++++.+++.|++.|.+|++++.+. +.| ++
T Consensus 102 lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~--~~G-~d 178 (233)
T PRK00748 102 IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGT--LSG-PN 178 (233)
T ss_pred ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCC--cCC-CC
Confidence 35666778999999888875554444443311 122 234678999999999999999999988776 667 79
Q ss_pred HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 321 ~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
|+.++++++.+++|||++|||.|.+|++++++.+|||+||+||+++..
T Consensus 179 ~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 179 VEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 999999999999999999999999999999965559999999999876
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-11 Score=121.54 Aligned_cols=207 Identities=23% Similarity=0.240 Sum_probs=135.3
Q ss_pred CCccccccccCC---Cc---hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVDA---SE---LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~---td---~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|++++||... .. ....+.+.+.|...+.+-.- .. -.+++.+....+.|..+|+. ..|.+...+
T Consensus 64 ~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s-----~~---s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~ 135 (344)
T cd02922 64 SLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNA-----SC---SLEEIVDARPPDQPLFFQLYVNKDRTKTEE 135 (344)
T ss_pred CCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcc-----cC---CHHHHHHhcCCCCcEEEEEeecCCHHHHHH
Confidence 789999999832 21 22335555666433322111 11 13334333334568999997 567788888
Q ss_pred HHHhhCCc-CcEEEeecCCCccee--eccCcc---------------------c-cc--cCChHHHHHHHHHHhhhccCc
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVA--KRGHYG---------------------A-YL--QDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~--~~gr~G---------------------~-~l--~~d~~~i~eiv~~v~~~~~iP 273 (487)
..++++++ +++|-|+...|..-. +.-+.| . .. ..++....+.++++++.+++|
T Consensus 136 l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~P 215 (344)
T cd02922 136 LLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLP 215 (344)
T ss_pred HHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCc
Confidence 88888887 899988888873210 000000 0 00 112334455667788888999
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---C--CCcEEEcCCCCCHHHHH
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---L--TIPVIANGNIQCLADVE 348 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~--~iPVi~nGgI~s~~da~ 348 (487)
|++|+ +. ..+.++.+.++|+|+|.|.+....+.. ...+..+.+.++++. + ++|||+.|||++..|+.
T Consensus 216 vivKg-----v~-~~~dA~~a~~~G~d~I~vsnhgG~~~d--~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~ 287 (344)
T cd02922 216 IVLKG-----VQ-TVEDAVLAAEYGVDGIVLSNHGGRQLD--TAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVL 287 (344)
T ss_pred EEEEc-----CC-CHHHHHHHHHcCCCEEEEECCCcccCC--CCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHH
Confidence 99994 32 366778889999999999765433321 123345566666653 2 59999999999999999
Q ss_pred HHHHhcCCcEEEeccccccCccc
Q psy7343 349 ACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+++ ..|||+|+|||+++..+..
T Consensus 288 kal-aLGA~aV~iG~~~l~~l~~ 309 (344)
T cd02922 288 KAL-CLGAKAVGLGRPFLYALSA 309 (344)
T ss_pred HHH-HcCCCEEEECHHHHHHHhh
Confidence 999 7999999999999887643
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.9e-11 Score=109.08 Aligned_cols=189 Identities=23% Similarity=0.256 Sum_probs=121.1
Q ss_pred cccccCCC-chH--HHHHHHHhCCccceeccccchhhhcChh---HHHHHHhcCCCCCCeeeeeccCCHHHHHH-HHHhh
Q psy7343 153 LAPMVDAS-ELP--WRLLSRRYGSHLCYTPMVSAHQFIADKK---LRQEILMSTPEDRPLIIQFCGNDSKNLTE-AAKLA 225 (487)
Q Consensus 153 lApma~~t-d~~--fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~---~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~-aa~~~ 225 (487)
+++|.+.. +.. +.....+.|+++........+..-.... ..... ....+.|+.+++..++..+... .++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 3 LALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEV--AAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred eeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHH--HhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 45555543 222 2344445677665544443322111111 12111 2234689999998766555443 35566
Q ss_pred CCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 226 EPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 226 ~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
.+. +|+|++|.+|+.. ++...++++++++.+ ++|++++++...+... . .+.+.|+|.|.
T Consensus 81 ~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~---~--~~~~~g~d~i~ 141 (200)
T cd04722 81 RAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPTGELAA---A--AAEEAGVDEVG 141 (200)
T ss_pred HHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccch---h--hHHHcCCCEEE
Confidence 655 8999999999642 677778888888887 8999999865432221 1 17888999999
Q ss_pred EEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 304 VHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 304 VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
++++...+............+..+++..++||+++|||++++++.++++ .|||+|++||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~-~Gad~v~vgs 200 (200)
T cd04722 142 LGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALA-LGADGVIVGS 200 (200)
T ss_pred EcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-hCCCEEEecC
Confidence 9877654431110001124566667778999999999999999999994 6999999997
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=116.66 Aligned_cols=112 Identities=24% Similarity=0.259 Sum_probs=90.0
Q ss_pred ccccCChHHHHHHHHHHhhhccCcEEEEeecc------------c---ccccHHHHHHHHHHcCCcEEEEEccccCCCCC
Q psy7343 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY------------Q---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314 (487)
Q Consensus 250 ~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~------------~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~ 314 (487)
+.++.+++.+.++++...+. .+++++++|.+ | ...+..++++.+++.|+|.|.+|++++.+.
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~-- 180 (232)
T TIGR03572 104 TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGT-- 180 (232)
T ss_pred hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCC--
Confidence 44567899999888765333 25566665552 1 123578999999999999999999877654
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 315 NTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 315 ~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
..| .+++.++++++.+++||+++|||+|.+|+.++++.+|||+|++|+++
T Consensus 181 ~~g-~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 181 MKG-YDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred cCC-CCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 444 58999999999999999999999999999997768999999999986
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=112.20 Aligned_cols=117 Identities=22% Similarity=0.279 Sum_probs=92.7
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeec------cc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI------YQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~------~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~ 319 (487)
|+.+..+++.+.++.+.+.+. .+.++++.|. ++ ...+..++++.+++.|++.+++|++++.+. +.| +
T Consensus 102 gs~~l~dp~~~~~i~~~~g~~-~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~--~~g-~ 177 (234)
T cd04732 102 GTAAVKNPELVKELLKEYGGE-RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGT--LSG-P 177 (234)
T ss_pred CchHHhChHHHHHHHHHcCCc-eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCc--cCC-C
Confidence 445567899998888776431 1223333222 11 234788999999999999999999987765 555 7
Q ss_pred CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 320 ~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+|+.++++++.+++||+++|||++.+|+.+++ +.|||+||+||+++.++-
T Consensus 178 ~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~-~~Ga~gv~vg~~~~~~~~ 227 (234)
T cd04732 178 NFELYKELAAATGIPVIASGGVSSLDDIKALK-ELGVAGVIVGKALYEGKI 227 (234)
T ss_pred CHHHHHHHHHhcCCCEEEecCCCCHHHHHHHH-HCCCCEEEEeHHHHcCCC
Confidence 89999999999999999999999999999999 479999999999999874
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-11 Score=116.21 Aligned_cols=115 Identities=22% Similarity=0.260 Sum_probs=91.4
Q ss_pred cccCChHHHHHHHHHHhh-hccCcEEEEeec----------cc--ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC
Q psy7343 251 YLQDDWPLLTNLVSSLRQ-AVQVPVSCKIRI----------YQ--DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~-~~~iPV~vKiR~----------~~--d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g 317 (487)
.+..+|+.+.++++.+.+ .+-+++.+|.|. ++ +..+..++++.+++.|+|.|.+|+++.... ..|
T Consensus 102 ~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~--~~g 179 (243)
T cd04731 102 AAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT--KKG 179 (243)
T ss_pred hhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCC--CCC
Confidence 345689999998887743 344555555332 11 234678999999999999999999886543 333
Q ss_pred CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.+|+.++++++.+++||+++|||++++|+.++++.+|||+||+||+++..
T Consensus 180 -~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~ 229 (243)
T cd04731 180 -YDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG 229 (243)
T ss_pred -CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcC
Confidence 58999999999999999999999999999999977899999999998765
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-10 Score=112.47 Aligned_cols=187 Identities=21% Similarity=0.246 Sum_probs=129.1
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhhhc-ChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLA 225 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~-~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~ 225 (487)
+.|++.++|...++..+..++++.|. .+ .+.+ +++...+.++...... +.+.+. |..++++..+..++
T Consensus 34 ~~P~~inAM~t~in~~LA~~a~~~G~---~~------i~hK~~~E~~~sfvrk~k~~~-L~v~~SvG~t~e~~~r~~~lv 103 (321)
T TIGR01306 34 KLPVVPANMQTIIDEKLAEQLAENGY---FY------IMHRFDEESRIPFIKDMQERG-LFASISVGVKACEYEFVTQLA 103 (321)
T ss_pred cCcEEeeccchhhhHHHHHHHHHcCC---EE------EEecCCHHHHHHHHHhccccc-cEEEEEcCCCHHHHHHHHHHH
Confidence 66999999976666666778888873 21 1123 5555444554433222 244444 55677788888887
Q ss_pred CCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 226 EPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 226 ~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
+.. .|.|-+... || +-+.+.+.++.+++.++.|+++++ ++ ...+.++.+.++|+|+|.
T Consensus 104 ~a~~~~d~i~~D~a-------hg--------~s~~~~~~i~~i~~~~p~~~vi~G----nV-~t~e~a~~l~~aGad~I~ 163 (321)
T TIGR01306 104 EEALTPEYITIDIA-------HG--------HSNSVINMIKHIKTHLPDSFVIAG----NV-GTPEAVRELENAGADATK 163 (321)
T ss_pred hcCCCCCEEEEeCc-------cC--------chHHHHHHHHHHHHhCCCCEEEEe----cC-CCHHHHHHHHHcCcCEEE
Confidence 765 455544322 23 346677788889988888877775 44 367788899999999999
Q ss_pred EE---ccc---cCCCCCCCCCCCH--HHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 304 VH---GRT---VDQRGMNTGLASW--EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 304 Vh---gRt---~~~~g~~~g~~~~--~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
|+ ||+ +...+ .|.+.| ..+.++++..++|||++|||++..|+.+++ ..|||+||+||.+-.
T Consensus 164 V~~G~G~~~~tr~~~g--~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KAL-a~GAd~Vmig~~~ag 232 (321)
T TIGR01306 164 VGIGPGKVCITKIKTG--FGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSI-RFGASMVMIGSLFAG 232 (321)
T ss_pred ECCCCCccccceeeec--cCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHH-HcCCCEEeechhhcC
Confidence 96 442 22221 133344 588899998999999999999999999999 689999999986654
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.2e-10 Score=108.69 Aligned_cols=114 Identities=24% Similarity=0.272 Sum_probs=91.8
Q ss_pred cccccCChHHHHHHHHHHh-hhccCcEEEEeec------ccc---cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLR-QAVQVPVSCKIRI------YQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~-~~~~iPV~vKiR~------~~d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~ 318 (487)
|+.+..+++.+.++++.+. +. +.++++.|. +|. ..+..++++.+++.|++.+++|.+++.+. ..|
T Consensus 101 gs~~l~d~~~~~~~~~~~g~~~--i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~--~~g- 175 (230)
T TIGR00007 101 GTAAVENPDLVKELLKEYGPER--IVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGT--LSG- 175 (230)
T ss_pred ChHHhhCHHHHHHHHHHhCCCc--EEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCC--cCC-
Confidence 4555578899988888764 22 344454442 222 24678899999999999999999988765 444
Q ss_pred CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 319 ~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.+++.++++++.+++||+++|||++.+|+++++ .+|||+|++|++++.+
T Consensus 176 ~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~-~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 176 PNFELTKELVKAVNVPVIASGGVSSIDDLIALK-KLGVYGVIVGKALYEG 224 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEeHHHHcC
Confidence 689999999999999999999999999999988 6999999999999887
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=112.57 Aligned_cols=121 Identities=22% Similarity=0.296 Sum_probs=92.2
Q ss_pred cccccCChHHHHHHHHHHh-hhccCcEEEE---eec-ccc---cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLR-QAVQVPVSCK---IRI-YQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~-~~~~iPV~vK---iR~-~~d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~ 320 (487)
|+.+..+++.+.++.+.+. +.+-+.+.++ +.. +|+ ..+..++++.+++.|++.|.+|+++..+. +.| .+
T Consensus 105 Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~--~~g-~~ 181 (241)
T PRK13585 105 GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGL--LEG-VN 181 (241)
T ss_pred ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCC--cCC-CC
Confidence 4555678888888877652 2221112221 111 222 22789999999999999999999876543 444 69
Q ss_pred HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccccc
Q psy7343 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 321 ~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
|+.++++++.+++||+++|||+|.+|+.+++ .+||++|++|++++.+|..+.
T Consensus 182 ~~~i~~i~~~~~iPvia~GGI~~~~di~~~~-~~Ga~gv~vgsa~~~~~~~~~ 233 (241)
T PRK13585 182 TEPVKELVDSVDIPVIASGGVTTLDDLRALK-EAGAAGVVVGSALYKGKFTLE 233 (241)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEEHHHhcCCcCHH
Confidence 9999999999999999999999999999976 799999999999999988654
|
|
| >KOG2335|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=116.83 Aligned_cols=121 Identities=17% Similarity=0.294 Sum_probs=99.2
Q ss_pred HHHHhCCccceecccc-----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCC
Q psy7343 167 LSRRYGSHLCYTPMVS-----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGC 238 (487)
Q Consensus 167 i~~~~Ga~l~~t~~v~-----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~Gc 238 (487)
++.|+| || +++. |+.|+.+++++.++++. ...+.||++||| +.|.++..+.+++++++ ||
T Consensus 102 idlNcG---CP-q~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~a--------G~ 169 (358)
T KOG2335|consen 102 IDLNCG---CP-QKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDA--------GV 169 (358)
T ss_pred ccccCC---CC-HHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhC--------CC
Confidence 556788 77 4444 77889999999999873 445679999999 78899999999999998 88
Q ss_pred CcceeeccCccccc-----cCChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 239 PQMVAKRGHYGAYL-----QDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 239 P~~i~~~gr~G~~l-----~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
..+++|||+..+- ..||+.+..+.+ .+. +||++|+ ++....|+-+.++.+|+||||+ ||+.
T Consensus 170 -~~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNG----nI~~~~d~~~~~~~tG~dGVM~-argl 236 (358)
T KOG2335|consen 170 -SLLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANG----NILSLEDVERCLKYTGADGVMS-ARGL 236 (358)
T ss_pred -cEEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeC----CcCcHHHHHHHHHHhCCceEEe-cchh
Confidence 7899999986542 567888776554 454 9999998 8889999999999999999999 8853
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-09 Score=110.04 Aligned_cols=196 Identities=22% Similarity=0.232 Sum_probs=104.8
Q ss_pred CCccccccccCCCchHHHHHHHHhC-CccceeccccchhhhcChhHHHHHHh--cCCCCCCeeeeeccC--CHHHHH-HH
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILM--STPEDRPLIIQFCGN--DSKNLT-EA 221 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~G-a~l~~t~~v~~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g~--d~~~~~-~a 221 (487)
+.|++++||.+++...+-....|.| .+...+... +++...+.++ +...+.|+.|++... +..... ..
T Consensus 11 ~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~-------~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~ 83 (330)
T PF03060_consen 11 KYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGL-------TPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAW 83 (330)
T ss_dssp SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTS-------SHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHH
T ss_pred CcCEEcCCCCCCChHHHHHHHHhCCCEeecccccc-------ChHHHHHHHHHHHhhccccccccccccCcccchhhhhh
Confidence 6799999999998888775555555 344432222 2233332221 111244999998732 322220 01
Q ss_pred HHhhCCcCcEEEeecCCC-------------cceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHH
Q psy7343 222 AKLAEPHCDGIDINIGCP-------------QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 222 a~~~~~~~d~IdiN~GcP-------------~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~ 288 (487)
.+.+......+.+..+.| ..+..+. | .|. .++++.+++ .++.|+..+ ...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--G-----~p~--~~~i~~l~~-~gi~v~~~v-------~s~ 146 (330)
T PF03060_consen 84 PKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGF--G-----LPP--PEVIERLHA-AGIKVIPQV-------TSV 146 (330)
T ss_dssp HHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEES--S-----SC---HHHHHHHHH-TT-EEEEEE-------SSH
T ss_pred hhhhHHHHHHHHHHhCcccccccccccccceEEEEeec--c-----cch--HHHHHHHHH-cCCcccccc-------CCH
Confidence 111100000011111222 1111111 1 120 123334443 378888876 556
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCC-C--CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTG-L--ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~--~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+.++.+++.|+|+|++.|.- .|+..| . ..+.++.++++.+++|||+.|||.+.+++..++ ..|||+|++|+.+
T Consensus 147 ~~A~~a~~~G~D~iv~qG~e---AGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal-~lGA~gV~~GTrF 222 (330)
T PF03060_consen 147 REARKAAKAGADAIVAQGPE---AGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAAL-ALGADGVQMGTRF 222 (330)
T ss_dssp HHHHHHHHTT-SEEEEE-TT---SSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHH-HCT-SEEEESHHH
T ss_pred HHHHHhhhcCCCEEEEeccc---cCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHH-HcCCCEeecCCeE
Confidence 67788999999999997652 233444 2 257889999999999999999999999999999 7999999999999
Q ss_pred ccCccc
Q psy7343 366 LYNPAL 371 (487)
Q Consensus 366 l~~P~l 371 (487)
+.-+.-
T Consensus 223 l~t~Es 228 (330)
T PF03060_consen 223 LATEES 228 (330)
T ss_dssp HTSTTS
T ss_pred Eecccc
Confidence 877643
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=108.11 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=90.6
Q ss_pred cccccCChHHHHHHHHHHh-h----hcc-------CcEEEEeecccc--cccHHHHHHHHHHcCCcEEEEEccccCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLR-Q----AVQ-------VPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~-~----~~~-------iPV~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~ 314 (487)
|+.+..+|+.+.++.+.+. + .++ .|+.+++|.+.+ ..+..++++.+++.|++.+.+|+..+...
T Consensus 103 gt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~-- 180 (253)
T PRK02083 103 NSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT-- 180 (253)
T ss_pred ChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCC--
Confidence 3444568999999888762 1 122 355777776543 23678899999999999999977443222
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 315 NTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 315 ~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
..| .+|+.++++++.+++|||++|||.|.+|+.++++.+|||+|++|+++...
T Consensus 181 ~~g-~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 181 KNG-YDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred CCC-cCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 233 48999999999999999999999999999999966899999999988765
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=112.72 Aligned_cols=212 Identities=24% Similarity=0.247 Sum_probs=132.0
Q ss_pred ceeeeeccccCCCCCccccccccCCC--c----hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeee
Q psy7343 135 PLIIQRTIFPRLGSPRFILAPMVDAS--E----LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208 (487)
Q Consensus 135 p~~vQl~~~~~~g~~~~~lApma~~t--d----~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~V 208 (487)
.+..++ ++.--+.|++++||.+.. + ....+.+.+.|.. +..++.-... .+++..... .|...
T Consensus 47 D~st~~--lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~-----~~lss~s~~~---~e~ia~~~~--~~~~~ 114 (356)
T PF01070_consen 47 DTSTTF--LGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIP-----MMLSSQSSAS---LEEIAAASG--GPLWF 114 (356)
T ss_dssp BSSEEE--TTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSE-----EEEETTCSSC---HHHHHHHCT--SEEEE
T ss_pred CCCeee--CCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcc-----eeccCCccCC---HHHHHhhcc--CCeEE
Confidence 355554 321127899999998542 1 1233566666743 3332221111 233333222 78899
Q ss_pred eec-cCCHHHHHHHHHhhCCc-CcEEEeecCCCccee------------------------eccCc--------------
Q psy7343 209 QFC-GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVA------------------------KRGHY-------------- 248 (487)
Q Consensus 209 qi~-g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~------------------------~~gr~-------------- 248 (487)
||. -.|.+...+..++++++ ++++-++...|.... .|.+.
T Consensus 115 Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 194 (356)
T PF01070_consen 115 QLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPG 194 (356)
T ss_dssp EEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSS
T ss_pred EEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCC
Confidence 987 46778888888888877 888877766533100 01110
Q ss_pred --cc---cc---cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC
Q psy7343 249 --GA---YL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320 (487)
Q Consensus 249 --G~---~l---~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~ 320 (487)
+. .. .-|+....+-++.+++.+++||++|+ + -..+-++.+.+.|+|+|.|++.+..+. -.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKg-----v-~~~~da~~~~~~G~~~i~vs~hGGr~~--d~~~~~ 266 (356)
T PF01070_consen 195 DNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKG-----V-LSPEDAKRAVDAGVDGIDVSNHGGRQL--DWGPPT 266 (356)
T ss_dssp TSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEE-----E--SHHHHHHHHHTT-SEEEEESGTGTSS--TTS-BH
T ss_pred CcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEe-----c-ccHHHHHHHHhcCCCEEEecCCCcccC--cccccc
Confidence 00 00 01233333446667788999999996 3 334556788899999999977665554 335667
Q ss_pred HHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 321 WEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 321 ~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.+.+.++++.+ ++||++.|||++..|+.+.+ ..||++|.+||+++.
T Consensus 267 ~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kal-aLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 267 IDALPEIRAAVGDDIPIIADGGIRRGLDVAKAL-ALGADAVGIGRPFLY 314 (356)
T ss_dssp HHHHHHHHHHHTTSSEEEEESS--SHHHHHHHH-HTT-SEEEESHHHHH
T ss_pred ccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHH-HcCCCeEEEccHHHH
Confidence 78888998876 69999999999999999999 799999999997654
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >KOG1436|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-09 Score=105.29 Aligned_cols=177 Identities=21% Similarity=0.240 Sum_probs=121.3
Q ss_pred CCCeeeeeccC--C---HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh-------c
Q psy7343 203 DRPLIIQFCGN--D---SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-------V 270 (487)
Q Consensus 203 ~~Pv~Vqi~g~--d---~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-------~ 270 (487)
..++.|++..+ + ..++++-.+..-+.+|...||..||+.--. -++..+.++ .+++..+..+ .
T Consensus 178 ~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtpGl-----r~lq~k~~L-~~ll~~v~~a~~~~~~~~ 251 (398)
T KOG1436|consen 178 PAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTPGL-----RSLQKKSDL-RKLLTKVVQARDKLPLGK 251 (398)
T ss_pred cccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCcch-----hhhhhHHHH-HHHHHHHHHHHhccccCC
Confidence 34677887622 2 335555555555668999999999974111 122223332 2222222221 1
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc------------cCCCCCCCCCCC----HHHHHHHHhhC--C
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT------------VDQRGMNTGLAS----WEHITAVRKAL--T 332 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt------------~~~~g~~~g~~~----~~~i~~i~~~~--~ 332 (487)
..|+.+|+-..-...+..|++..+.+.++|++++.+-| +.+.|+.+|++. .+.++++...+ +
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 45899998554445678899999999999999996643 235677888764 36777777776 7
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQY 393 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~ 393 (487)
||||+.|||.|.+|+.+.+ ..||..|++++++... |-+|.++ .++..++++..
T Consensus 332 IpiIG~GGV~SG~DA~Eki-raGASlvQlyTal~yeGp~i~~kI-------k~El~~ll~~k 385 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKI-RAGASLVQLYTALVYEGPAIIEKI-------KRELSALLKAK 385 (398)
T ss_pred CceEeecCccccHhHHHHH-hcCchHHHHHHHHhhcCchhHHHH-------HHHHHHHHHhc
Confidence 9999999999999999999 7999999999998776 8887743 34555555544
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=110.14 Aligned_cols=205 Identities=19% Similarity=0.183 Sum_probs=131.9
Q ss_pred CCccccccccCC--Cc----hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVDA--SE----LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~--td----~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|+++||++.. .+ ....+.+.+.|. +++.+..-... .+++... .+.|...|+. ..|.+...+
T Consensus 72 ~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~-----~~~lSt~s~~s---lEeva~~--~~~~~wfQlY~~~dr~~~~~ 141 (364)
T PLN02535 72 SAPIMIAPTAMHKLAHPEGEIATARAAAACNT-----IMVLSFMASCT---VEEVASS--CNAVRFLQLYVYKRRDIAAQ 141 (364)
T ss_pred cccceechHHHhcccCcchHHHHHHHHHHcCC-----CeEecCcccCC---HHHHHhc--CCCCeEEEEeccCCHHHHHH
Confidence 679999998732 22 223345555664 33332211111 2333322 2458999998 467777788
Q ss_pred HHHhhCCc-CcEEEeecCCCcc-----eeeccC-------c------------ccc----c--cCChHHHHHHHHHHhhh
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQM-----VAKRGH-------Y------------GAY----L--QDDWPLLTNLVSSLRQA 269 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~-----i~~~gr-------~------------G~~----l--~~d~~~i~eiv~~v~~~ 269 (487)
..++++++ +.+|-+....|.. ..+++- . +.. . .-++....+-++.+++.
T Consensus 142 ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~ 221 (364)
T PLN02535 142 LVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSI 221 (364)
T ss_pred HHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhc
Confidence 88888887 7777776666541 011000 0 000 0 00222233445667778
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHH
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADV 347 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da 347 (487)
++.||++|+ +.+. +.++.+.+.|+|+|.|.+....+.+ .+++..+.+.++++.+ ++|||+.|||++..|+
T Consensus 222 ~~~PvivKg-----V~~~-~dA~~a~~~GvD~I~vsn~GGr~~d--~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv 293 (364)
T PLN02535 222 TNLPILIKG-----VLTR-EDAIKAVEVGVAGIIVSNHGARQLD--YSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDV 293 (364)
T ss_pred cCCCEEEec-----CCCH-HHHHHHHhcCCCEEEEeCCCcCCCC--CChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHH
Confidence 899999994 3333 4478888999999999665433332 2344567888888766 7999999999999999
Q ss_pred HHHHHhcCCcEEEeccccccCccc
Q psy7343 348 EACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.+.+ ..|||+|++||+++.....
T Consensus 294 ~KAL-alGA~aV~vGr~~l~~l~~ 316 (364)
T PLN02535 294 FKAL-ALGAQAVLVGRPVIYGLAA 316 (364)
T ss_pred HHHH-HcCCCEEEECHHHHhhhhh
Confidence 9999 7999999999998886553
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.07 E-value=5e-10 Score=112.94 Aligned_cols=209 Identities=17% Similarity=0.146 Sum_probs=126.7
Q ss_pred CCceEEecCCCC--CCHHHHHHHHHcCCCeEEccceeccccccCcH----------------------HHHHHhhh--CC
Q psy7343 78 SPRFILAPMVDA--SELPWRLLSRRYGSHLCYTPMVSAHQFIADKK----------------------LRQEILMS--TP 131 (487)
Q Consensus 78 ~~~~~LAPMag~--td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~----------------------~~~~~~~~--~~ 131 (487)
++++++| +|. ++..||.++...|++.++|++|+.+....... .-.+.+.. ..
T Consensus 10 ~nP~~~a--ag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~ 87 (296)
T cd04740 10 KNPVILA--SGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLRE 87 (296)
T ss_pred CCCCEEC--CCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhc
Confidence 5678888 666 88999999998889999999998875541111 11111111 23
Q ss_pred CCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCcc------ceeccccchhhhcChhHHHHHHhc--CCCC
Q psy7343 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHL------CYTPMVSAHQFIADKKLRQEILMS--TPED 203 (487)
Q Consensus 132 ~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l------~~t~~v~~~~Ll~~~~~~~~~l~~--~~~~ 203 (487)
.+.|+++|+.+. +...+.. ......+.|++. ||.....+..+..+++...++++. ...+
T Consensus 88 ~~~p~ivsi~g~----~~~~~~~---------~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~ 154 (296)
T cd04740 88 FGTPVIASIAGS----TVEEFVE---------VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATD 154 (296)
T ss_pred CCCcEEEEEecC----CHHHHHH---------HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccC
Confidence 467999997422 1111110 011223334432 332222255677888887777752 2337
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeec---CCC-ccee----eccCccc-cccCChHHHHHHHHHHhhhccCc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINI---GCP-QMVA----KRGHYGA-YLQDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~---GcP-~~i~----~~gr~G~-~l~~d~~~i~eiv~~v~~~~~iP 273 (487)
.||+||+.. +.++..+.++.++++ +|+|.+.- |.. ...+ ....+|+ .....+....+.++.+++.+++|
T Consensus 155 ~Pv~vKl~~-~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ip 233 (296)
T cd04740 155 VPVIVKLTP-NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIP 233 (296)
T ss_pred CCEEEEeCC-CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCC
Confidence 899999975 334677888877766 78887631 110 0000 0001111 11223344556667788888999
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
|++.+ ++.+..++.+.++ +|+|.|++ +|.
T Consensus 234 ii~~G----GI~~~~da~~~l~-~GAd~V~i-gra 262 (296)
T cd04740 234 IIGVG----GIASGEDALEFLM-AGASAVQV-GTA 262 (296)
T ss_pred EEEEC----CCCCHHHHHHHHH-cCCCEEEE-chh
Confidence 99998 7778888888885 89999999 774
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.5e-09 Score=106.73 Aligned_cols=214 Identities=17% Similarity=0.149 Sum_probs=135.6
Q ss_pred CceeeeeccccCCCCCccccccccC--CC----chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCee
Q psy7343 134 RPLIIQRTIFPRLGSPRFILAPMVD--AS----ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207 (487)
Q Consensus 134 ~p~~vQl~~~~~~g~~~~~lApma~--~t----d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~ 207 (487)
..+.+.+ ++.--+.|+++||++. .. +....+.+.+.|... +.++.-... .+++.... +.|..
T Consensus 52 ~d~~ttl--lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~-----~lSt~ss~s---iEeva~a~--~~~~w 119 (361)
T cd04736 52 RDISASL--FGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPF-----VLSTASNMS---IEDVARQA--DGDLW 119 (361)
T ss_pred CCCceeE--CCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcE-----EeeCCCCCC---HHHHHhhc--CCCeE
Confidence 3455553 3322367999999863 22 223345566666433 322111111 33333222 35789
Q ss_pred eeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcce-----eecc----------------------------------C
Q psy7343 208 IQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMV-----AKRG----------------------------------H 247 (487)
Q Consensus 208 Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i-----~~~g----------------------------------r 247 (487)
.|+.-.+.+...++.++++++ +++|=+....|..= .+++ .
T Consensus 120 fQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~ 199 (361)
T cd04736 120 FQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLAN 199 (361)
T ss_pred EEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccc
Confidence 998866655566778888776 78777766654310 0000 0
Q ss_pred c----ccc-------c--cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCC
Q psy7343 248 Y----GAY-------L--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314 (487)
Q Consensus 248 ~----G~~-------l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~ 314 (487)
. +.. . .-|+....+.++.+++.++.||++|+ +. ..+-++.+.+.|+|+|.|++.+..|.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKg-----V~-~~eda~~a~~~G~d~I~VSnhGGrql-- 271 (361)
T cd04736 200 FASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKG-----IV-TAEDAKRCIELGADGVILSNHGGRQL-- 271 (361)
T ss_pred cccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEec-----CC-CHHHHHHHHHCCcCEEEECCCCcCCC--
Confidence 0 000 0 01222334567778888999999994 43 34556777789999999965544442
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 315 NTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 315 ~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
....+..+.+.++++.+++|||+.|||++..|+.+.+ ..|||+|++||+++.-
T Consensus 272 d~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KAL-aLGA~aV~iGr~~l~~ 324 (361)
T cd04736 272 DDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKAL-ALGANAVLLGRATLYG 324 (361)
T ss_pred cCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHHHH
Confidence 2334568889999988899999999999999999999 7999999999987753
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-09 Score=101.80 Aligned_cols=158 Identities=22% Similarity=0.253 Sum_probs=110.9
Q ss_pred cChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHh
Q psy7343 188 ADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267 (487)
Q Consensus 188 ~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~ 267 (487)
++.+..+++++ ..++-||+.|. ..+...+.++++ . |+ ..++. |+....||+++.++++..-
T Consensus 62 ~n~~~i~~i~~----~~~~~vQvGGG-IRs~~~v~~ll~-~--------G~-~rVii----Gt~av~~p~~v~~~~~~~g 122 (241)
T COG0106 62 RNLEAIKEILE----ATDVPVQVGGG-IRSLEDVEALLD-A--------GV-ARVII----GTAAVKNPDLVKELCEEYG 122 (241)
T ss_pred ccHHHHHHHHH----hCCCCEEeeCC-cCCHHHHHHHHH-C--------CC-CEEEE----ecceecCHHHHHHHHHHcC
Confidence 34455566654 34677898862 122233333443 3 54 33332 4444679999999888765
Q ss_pred hhccCcEEEEeec------ccc---cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc
Q psy7343 268 QAVQVPVSCKIRI------YQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN 338 (487)
Q Consensus 268 ~~~~iPV~vKiR~------~~d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n 338 (487)
+++ -|.+-.|. ||. ..+..++++.+++.|+..+.+|.-.++.. .+ .+|++.++++.+.+++||+++
T Consensus 123 ~ri--vv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGt--l~-G~n~~l~~~l~~~~~ipviaS 197 (241)
T COG0106 123 DRI--VVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGT--LS-GPNVDLVKELAEAVDIPVIAS 197 (241)
T ss_pred CcE--EEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccc--cC-CCCHHHHHHHHHHhCcCEEEe
Confidence 432 22232222 232 23789999999999999999976655543 44 479999999999999999999
Q ss_pred CCCCCHHHHHHHHHhc-CCcEEEeccccccCcc
Q psy7343 339 GNIQCLADVEACLAQT-GVAGVMTAEGNLYNPA 370 (487)
Q Consensus 339 GgI~s~~da~~~l~~~-Gad~VmiGRa~l~~P~ 370 (487)
|||.|.+|++.+. +. |+++|.+||+++..-.
T Consensus 198 GGv~s~~Di~~l~-~~~G~~GvIvG~ALy~g~~ 229 (241)
T COG0106 198 GGVSSLDDIKALK-ELSGVEGVIVGRALYEGKF 229 (241)
T ss_pred cCcCCHHHHHHHH-hcCCCcEEEEehHHhcCCC
Confidence 9999999999988 56 9999999999988744
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.5e-09 Score=104.94 Aligned_cols=201 Identities=21% Similarity=0.247 Sum_probs=129.3
Q ss_pred CCccccccccCCC------chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~t------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|+++||++... +....+.+...|. +|+.+..-... .+++-.. .+.+...|+. ..|.+...+
T Consensus 69 ~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi-----~~~lSt~ss~s---lEeIa~a--~~~~~wfQLY~~~Dr~~~~~ 138 (366)
T PLN02979 69 SMPIMVAPTAMQKMAHPDGEYATARAASAAGT-----IMTLSSWATSS---VEEVAST--GPGIRFFQLYVYKNRNVVEQ 138 (366)
T ss_pred CccceecHHHHHhhCCCChHHHHHHHHHHcCC-----CeeeccCcCCC---HHHHHhc--cCCCeEEEEeecCCHHHHHH
Confidence 6799999987321 2233455556663 33332211111 3333322 2358999998 467777788
Q ss_pred HHHhhCCc-CcEEEeecCCCcc-e----eecc----------Cc-----c-------c----cc--cCChHHHHHHHHHH
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQM-V----AKRG----------HY-----G-------A----YL--QDDWPLLTNLVSSL 266 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~-i----~~~g----------r~-----G-------~----~l--~~d~~~i~eiv~~v 266 (487)
..++++++ +.+|-+....|.. . .+++ .. + . .. .-++....+-++.+
T Consensus 139 ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wl 218 (366)
T PLN02979 139 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 218 (366)
T ss_pred HHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 88888876 7877776666542 0 0100 00 0 0 00 01122223446668
Q ss_pred hhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCH
Q psy7343 267 RQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCL 344 (487)
Q Consensus 267 ~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~ 344 (487)
++..++||++|+ +.+ .+-++.+.++|+|+|.|++....+. ...++..+.+.++++.+ ++||++.|||++.
T Consensus 219 r~~~~~PvivKg-----V~~-~~dA~~a~~~Gvd~I~VsnhGGrql--d~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G 290 (366)
T PLN02979 219 QTITKLPILVKG-----VLT-GEDARIAIQAGAAGIIVSNHGARQL--DYVPATISALEEVVKATQGRIPVFLDGGVRRG 290 (366)
T ss_pred HhccCCCEEeec-----CCC-HHHHHHHHhcCCCEEEECCCCcCCC--CCchhHHHHHHHHHHHhCCCCeEEEeCCcCcH
Confidence 888999999996 333 5667788899999999977655443 22345567888887765 5999999999999
Q ss_pred HHHHHHHHhcCCcEEEecccccc
Q psy7343 345 ADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.|+.+.+ ..|||+|++||.++.
T Consensus 291 ~Di~KAL-ALGAdaV~iGrp~L~ 312 (366)
T PLN02979 291 TDVFKAL-ALGASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHH-HcCCCEEEEcHHHHH
Confidence 9999999 799999999997664
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=106.67 Aligned_cols=117 Identities=20% Similarity=0.203 Sum_probs=90.0
Q ss_pred cccccCChHHHHHHHHHHh-hhc--cCc-----E------EEEeecccc--cccHHHHHHHHHHcCCcEEEEEccccCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLR-QAV--QVP-----V------SCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQR 312 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~-~~~--~iP-----V------~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~ 312 (487)
|.....+|+.+.++.+..- +++ ++. + .+++|...+ ..+..++++.+++.|++.|.+|++++..
T Consensus 103 gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g- 181 (254)
T TIGR00735 103 NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDG- 181 (254)
T ss_pred ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCccc-
Confidence 4445568999998877652 222 111 1 244444332 3467899999999999999999987643
Q ss_pred CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 313 GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 313 g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+.+.++|+.++++++.+++||+++|||++.+|+.++++..|+|+|++|+++...
T Consensus 182 --~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 182 --TKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred --CCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 345579999999999999999999999999999999966669999999987654
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-08 Score=105.03 Aligned_cols=201 Identities=20% Similarity=0.218 Sum_probs=128.6
Q ss_pred CCccccccccCCC------chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~t------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|+++||++... +....+.+.+.|... +.+..-... .+++... .+.|...|+. ..|.+...+
T Consensus 70 ~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~-----~lSt~ss~s---lEeva~~--~~~~~wfQlY~~~Dr~~~~~ 139 (367)
T PLN02493 70 SMPIMVAPTAMQKMAHPDGEYATARAASAAGTIM-----TLSSWATSS---VEEVAST--GPGIRFFQLYVYKNRNVVEQ 139 (367)
T ss_pred cccceechHHHHhhcCCchHHHHHHHHHHcCCCe-----eecCcccCC---HHHHHhc--CCCCcEEEEeecCCHHHHHH
Confidence 6799999987321 223345566666433 322211111 2333322 2357899988 467777788
Q ss_pred HHHhhCCc-CcEEEeecCCCcce-----eecc---------Cc-------------cc----cc--cCChHHHHHHHHHH
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMV-----AKRG---------HY-------------GA----YL--QDDWPLLTNLVSSL 266 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i-----~~~g---------r~-------------G~----~l--~~d~~~i~eiv~~v 266 (487)
..++++++ +.+|=+....|..- .+++ +. +. .. .-++....+-++.+
T Consensus 140 li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wl 219 (367)
T PLN02493 140 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 219 (367)
T ss_pred HHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 88888876 77776666554320 0000 00 00 00 00111122335567
Q ss_pred hhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCH
Q psy7343 267 RQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCL 344 (487)
Q Consensus 267 ~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~ 344 (487)
++..++||++|+ +.+ .+-++.+.++|+|+|.|++....+.+ ..++..+.+.++++.+ ++||++.|||++.
T Consensus 220 r~~~~~PiivKg-----V~~-~~dA~~a~~~Gvd~I~VsnhGGrqld--~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G 291 (367)
T PLN02493 220 QTITKLPILVKG-----VLT-GEDARIAIQAGAAGIIVSNHGARQLD--YVPATISALEEVVKATQGRIPVFLDGGVRRG 291 (367)
T ss_pred HhccCCCEEeec-----CCC-HHHHHHHHHcCCCEEEECCCCCCCCC--CchhHHHHHHHHHHHhCCCCeEEEeCCcCcH
Confidence 888899999996 333 56677888999999999776555542 2345567888887765 5999999999999
Q ss_pred HHHHHHHHhcCCcEEEecccccc
Q psy7343 345 ADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.|+.+.+ ..||++|+|||.++.
T Consensus 292 ~Dv~KAL-ALGA~aV~iGr~~l~ 313 (367)
T PLN02493 292 TDVFKAL-ALGASGIFIGRPVVF 313 (367)
T ss_pred HHHHHHH-HcCCCEEEEcHHHHH
Confidence 9999999 789999999997764
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=105.34 Aligned_cols=202 Identities=16% Similarity=0.169 Sum_probs=127.4
Q ss_pred CCccccccccCCC------chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeecc-CCHHHHHH
Q psy7343 148 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG-NDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~t------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g-~d~~~~~~ 220 (487)
+.|+++||++... +....+.+.+.|.-. +.+..-... .+++... ..+.|...|+.- .|.+...+
T Consensus 85 ~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~-----~lSt~ss~s---lEeIa~~-~~~~~~wfQlY~~~dr~~~~~ 155 (383)
T cd03332 85 AAPLLLAPIGVQELFHPDAELATARAAAELGVPY-----ILSTASSSS---IEDVAAA-AGDAPRWFQLYWPKDDDLTES 155 (383)
T ss_pred cccceechHHHHHhcCCcHHHHHHHHHHHcCCCe-----eecCCCCCC---HHHHHhh-cCCCCcEEEeeCCCCHHHHHH
Confidence 6799999987321 223345555666433 222110111 3333322 224588999884 57777778
Q ss_pred HHHhhCCc-CcEEEeecCCCcce-----ee-----------------cc----Cc--c-----c-------c---c---c
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMV-----AK-----------------RG----HY--G-----A-------Y---L---Q 253 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i-----~~-----------------~g----r~--G-----~-------~---l---~ 253 (487)
..++++++ +.+|-+....|..- .+ +. .+ + . . . .
T Consensus 156 ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (383)
T cd03332 156 LLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVF 235 (383)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhc
Confidence 88888776 77776654443200 00 00 00 0 0 0 0 0
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-- 331 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-- 331 (487)
-|+..-.+-++.+++.++.||++|+ +.+ .+-++.+.+.|+|+|.|++.+..+. -.+.+..+.+.++++.+
T Consensus 236 ~~~~~tW~~i~~lr~~~~~pvivKg-----V~~-~~dA~~a~~~G~d~I~vsnhGGr~~--d~~~~t~~~L~ei~~~~~~ 307 (383)
T cd03332 236 SGPSLTWEDLAFLREWTDLPIVLKG-----ILH-PDDARRAVEAGVDGVVVSNHGGRQV--DGSIAALDALPEIVEAVGD 307 (383)
T ss_pred CCCCCCHHHHHHHHHhcCCCEEEec-----CCC-HHHHHHHHHCCCCEEEEcCCCCcCC--CCCcCHHHHHHHHHHHhcC
Confidence 0122222445557777899999994 333 4556777889999999965443332 23556678888998877
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
++||++.|||++..|+.+.+ ..|||+|++||+++.
T Consensus 308 ~~~vi~dGGIr~G~Dv~KAL-aLGA~~v~iGr~~l~ 342 (383)
T cd03332 308 RLTVLFDSGVRTGADIMKAL-ALGAKAVLIGRPYAY 342 (383)
T ss_pred CCeEEEeCCcCcHHHHHHHH-HcCCCEEEEcHHHHH
Confidence 59999999999999999999 799999999998873
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=100.54 Aligned_cols=137 Identities=25% Similarity=0.348 Sum_probs=94.6
Q ss_pred CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc---------
Q psy7343 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV--------- 309 (487)
Q Consensus 239 P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~--------- 309 (487)
|..+...| |-+.+++|+.+.+ |++.+++||++|.|.+. ..-++.|+++|+|.|.-+-|.+
T Consensus 41 p~d~r~~g--gv~R~~~p~~I~~----I~~~V~iPVig~~kigh-----~~Ea~~L~~~GvDiIDeTe~lrPade~~~~~ 109 (287)
T TIGR00343 41 PADIRASG--GVARMSDPKMIKE----IMDAVSIPVMAKVRIGH-----FVEAQILEALGVDYIDESEVLTPADWTFHID 109 (287)
T ss_pred chhhHhcC--CeeecCCHHHHHH----HHHhCCCCEEEEeeccH-----HHHHHHHHHcCCCEEEccCCCCcHHHHHHHH
Confidence 55543333 5566788988777 55567999999998763 4456667777777774322110
Q ss_pred ------------------------------CCCCCCCCC-----------------------------------CCHHHH
Q psy7343 310 ------------------------------DQRGMNTGL-----------------------------------ASWEHI 324 (487)
Q Consensus 310 ------------------------------~~~g~~~g~-----------------------------------~~~~~i 324 (487)
....+|+|. ++++.+
T Consensus 110 K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elL 189 (287)
T TIGR00343 110 KKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELL 189 (287)
T ss_pred HHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHH
Confidence 000113332 467899
Q ss_pred HHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcCh
Q psy7343 325 TAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPV 395 (487)
Q Consensus 325 ~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~~ 395 (487)
+++++..++||+ +.|||.|++|+..++ +.|||+|.+|+++...+. +.+..+.+.+.+..|.+
T Consensus 190 kei~~~~~iPVV~fAiGGI~TPedAa~~m-elGAdGVaVGSaI~ks~d--------P~~~akafv~ai~~~~~ 253 (287)
T TIGR00343 190 LEVLKLGKLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKSSN--------PEKLAKAIVEATTHYDN 253 (287)
T ss_pred HHHHHhCCCCEEEeccCCCCCHHHHHHHH-HcCCCEEEEhHHhhcCCC--------HHHHHHHHHHHHHHcCC
Confidence 999998899998 999999999999999 699999999999885322 12344566666666653
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-08 Score=102.88 Aligned_cols=202 Identities=21% Similarity=0.205 Sum_probs=126.5
Q ss_pred CCccccccccC--CC----chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVD--AS----ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~--~t----d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|+++||++. .. +....+.+.+.|. +|+.+..-... .+++... .+.|...|+. ..|.+...+
T Consensus 70 ~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~-----~~~lSt~ss~s---lEeia~~--~~~~~wfQlY~~~Dr~~~~~ 139 (381)
T PRK11197 70 SMPVALAPVGLTGMYARRGEVQAARAADAKGI-----PFTLSTVSVCP---IEEVAPA--IKRPMWFQLYVLRDRGFMRN 139 (381)
T ss_pred ccchhhChHHHhhccCCchHHHHHHHHHHcCC-----CEEeeCCCcCC---HHHHHhc--cCCCeEEEEEecCCHHHHHH
Confidence 67999999873 22 2233455555664 33322211111 3333322 2458999987 457777788
Q ss_pred HHHhhCCc-CcEEEeecCCCcc--e---eecc------------------C-------------ccc--c----------
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQM--V---AKRG------------------H-------------YGA--Y---------- 251 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~--i---~~~g------------------r-------------~G~--~---------- 251 (487)
..++++++ +.+|-+...+|.. . .+++ + .+. +
T Consensus 140 li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~ 219 (381)
T PRK11197 140 ALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED 219 (381)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhH
Confidence 88888876 8888777766531 0 0000 0 000 0
Q ss_pred ----c--cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHH
Q psy7343 252 ----L--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325 (487)
Q Consensus 252 ----l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~ 325 (487)
+ .-|+..-.+-++.+++.++.||++|+ + ...+-++.+.+.|+|+|.|++.+..+.. ...+..+.+.
T Consensus 220 ~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKg-----V-~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d--~~~~t~~~L~ 291 (381)
T PRK11197 220 YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG-----I-LDPEDARDAVRFGADGIVVSNHGGRQLD--GVLSSARALP 291 (381)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEe-----c-CCHHHHHHHHhCCCCEEEECCCCCCCCC--CcccHHHHHH
Confidence 0 00001111225667888899999995 3 3455567788899999999654433321 1234467777
Q ss_pred HHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 326 AVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 326 ~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++.+.+ ++||++.|||++..|+.+.+ ..|||+|++||.++.-
T Consensus 292 ~i~~a~~~~~~vi~dGGIr~g~Di~KAL-aLGA~~V~iGr~~l~~ 335 (381)
T PRK11197 292 AIADAVKGDITILADSGIRNGLDVVRMI-ALGADTVLLGRAFVYA 335 (381)
T ss_pred HHHHHhcCCCeEEeeCCcCcHHHHHHHH-HcCcCceeEhHHHHHH
Confidence 777765 69999999999999999999 7899999999977653
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=8e-08 Score=99.97 Aligned_cols=130 Identities=24% Similarity=0.291 Sum_probs=89.6
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
.++.+.++..+++..+|.|-|..+. + +...+.++++.+++.+ +.+|++. ++ .+.+.++
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~-------g--------~~~~~~~~v~~ik~~~p~~~vi~g-----~V-~T~e~a~ 209 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAH-------G--------HSTRIIELVKKIKTKYPNLDLIAG-----NI-VTKEAAL 209 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCC-------C--------CChhHHHHHHHHHhhCCCCcEEEE-----ec-CCHHHHH
Confidence 4454555555555546666554333 1 3455677888888876 6778774 33 4566677
Q ss_pred HHHHcCCcEEEEEccccC-------CCCCCCCCCCHHHHHHH---HhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 293 MLERAGCQLLAVHGRTVD-------QRGMNTGLASWEHITAV---RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 293 ~le~~G~d~I~VhgRt~~-------~~g~~~g~~~~~~i~~i---~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+.++|+|+|.+ |-+.. ..+ .|.+.+..+..+ .+..++|||+.|||+++.|+.+++ ..|||+||+|
T Consensus 210 ~l~~aGaD~I~v-G~g~Gs~c~tr~~~g--~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KAL-alGA~aVmvG 285 (404)
T PRK06843 210 DLISVGADCLKV-GIGPGSICTTRIVAG--VGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAI-AAGADSVMIG 285 (404)
T ss_pred HHHHcCCCEEEE-CCCCCcCCcceeecC--CCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEc
Confidence 888899999988 53321 111 144566655444 445689999999999999999999 7999999999
Q ss_pred cccccC
Q psy7343 363 EGNLYN 368 (487)
Q Consensus 363 Ra~l~~ 368 (487)
+.+...
T Consensus 286 s~~agt 291 (404)
T PRK06843 286 NLFAGT 291 (404)
T ss_pred ceeeee
Confidence 998874
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-09 Score=108.45 Aligned_cols=193 Identities=18% Similarity=0.101 Sum_probs=118.1
Q ss_pred CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceeccc--
Q psy7343 104 HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMV-- 181 (487)
Q Consensus 104 dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v-- 181 (487)
++..+||+++.++..-.+...+.....+ +.|+++|+.+. .+...+..-+..+.+..+..+..|+| ||....
T Consensus 71 g~~n~e~~s~~~~~~~~~~~~~~~~~~~-~~p~i~si~G~---~~~~~~~~~a~~~~~~gad~ielN~s---CP~~~~~~ 143 (299)
T cd02940 71 GFNNIELISEKPLEYWLKEIRELKKDFP-DKILIASIMCE---YNKEDWTELAKLVEEAGADALELNFS---CPHGMPER 143 (299)
T ss_pred cccCCccccccCHHHHHHHHHHHHhhCC-CCeEEEEecCC---CCHHHHHHHHHHHHhcCCCEEEEECC---CCCCCCCC
Confidence 6678999999988654444443333333 68999997321 01111111000111111222333455 665422
Q ss_pred -cchhhhcChhHHHHHHhc--CCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCc-----------ceeecc
Q psy7343 182 -SAHQFIADKKLRQEILMS--TPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQ-----------MVAKRG 246 (487)
Q Consensus 182 -~~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~-----------~i~~~g 246 (487)
.+..+.++++...++++. ...+.||+|||+. +.++..+.++.++++ .|+|-+.-.-+. ....|+
T Consensus 144 ~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~ 222 (299)
T cd02940 144 GMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP-NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEG 222 (299)
T ss_pred CCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC-CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccC
Confidence 266788999998888862 3346899999985 334677888877666 777653211100 011334
Q ss_pred Ccccc---ccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC
Q psy7343 247 HYGAY---LQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD 310 (487)
Q Consensus 247 r~G~~---l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~ 310 (487)
+++.. ....+....+.+..+++.+ ++||++++ ++.+.+++.+.+. +|||+|+| +|...
T Consensus 223 ~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~G----GI~~~~da~~~l~-aGA~~V~i-~ta~~ 285 (299)
T cd02940 223 KTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIG----GIESWEDAAEFLL-LGASVVQV-CTAVM 285 (299)
T ss_pred CCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEEC----CCCCHHHHHHHHH-cCCChheE-ceeec
Confidence 33222 2445555667777788888 89999998 8899999999996 99999999 77543
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=98.91 E-value=6e-08 Score=97.99 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=112.5
Q ss_pred CCccccccccCCCc-hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHh-c-C-CCCCCeeeeeccC-CHHHHHHHH
Q psy7343 148 SPRFILAPMVDASE-LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM-S-T-PEDRPLIIQFCGN-DSKNLTEAA 222 (487)
Q Consensus 148 ~~~~~lApma~~td-~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~-~-~-~~~~Pv~Vqi~g~-d~~~~~~aa 222 (487)
+.|++.+||+++++ ..+-....|.|. + +++.+. ...++..++.++ . . ..+.|+.|++... +...+.+..
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGg-L---G~la~~--~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGG-L---PFIALA--LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCc-c---ccCCCC--CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 35888999999998 566666666652 1 122221 123444444443 2 2 2578999998542 112233344
Q ss_pred HhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcE
Q psy7343 223 KLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301 (487)
Q Consensus 223 ~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~ 301 (487)
+.+.+. ...|-+..| +|..+ +.+++ .++.|+..+ ...+.++.+++.|+|.
T Consensus 76 ~vi~e~~v~~V~~~~G-----------------~P~~~----~~lk~-~Gi~v~~~v-------~s~~~A~~a~~~GaD~ 126 (320)
T cd04743 76 AVVRAIKPTFALIAGG-----------------RPDQA----RALEA-IGISTYLHV-------PSPGLLKQFLENGARK 126 (320)
T ss_pred HHHHhcCCcEEEEcCC-----------------ChHHH----HHHHH-CCCEEEEEe-------CCHHHHHHHHHcCCCE
Confidence 444333 222222222 34322 33443 388888776 4566678999999999
Q ss_pred EEEEccccCCCCCCCCC-CCHHHHHHHHhh----------CCCcEEEcCCCCCHHHHHHHHHhcCC--------cEEEec
Q psy7343 302 LAVHGRTVDQRGMNTGL-ASWEHITAVRKA----------LTIPVIANGNIQCLADVEACLAQTGV--------AGVMTA 362 (487)
Q Consensus 302 I~VhgRt~~~~g~~~g~-~~~~~i~~i~~~----------~~iPVi~nGgI~s~~da~~~l~~~Ga--------d~VmiG 362 (487)
|++.|.-. |+..|. ..+.++.++.+. .++|||+.|||.+...+..++ ..|+ +||++|
T Consensus 127 vVaqG~EA---GGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaal-aLGA~~~~~Ga~~GV~mG 202 (320)
T cd04743 127 FIFEGREC---GGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVS-ALAAPLAERGAKVGVLMG 202 (320)
T ss_pred EEEecCcC---cCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHH-HcCCcccccccccEEEEc
Confidence 99977633 223332 122333333322 279999999999999998888 6777 899999
Q ss_pred cccccCccc
Q psy7343 363 EGNLYNPAL 371 (487)
Q Consensus 363 Ra~l~~P~l 371 (487)
+.++.-+.-
T Consensus 203 TrFl~t~Es 211 (320)
T cd04743 203 TAYLFTEEA 211 (320)
T ss_pred cHHhcchhh
Confidence 998887665
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-09 Score=103.29 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|++.+.++.+++.. ..+..+++.++++++.+++||+++|||+|.+|+++++ ..|||+|++|++
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~---~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l-~~G~~~v~ig~~ 102 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASS---EGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLL-RAGADKVSINSA 102 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCccc---ccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCceEEECch
Confidence 378999999999999999999987643 3456789999999999999999999999999999999 589999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||+++.+
T Consensus 103 ~~~~p~~~~~ 112 (243)
T cd04731 103 AVENPELIRE 112 (243)
T ss_pred hhhChHHHHH
Confidence 9999999764
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-09 Score=104.17 Aligned_cols=86 Identities=21% Similarity=0.315 Sum_probs=78.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.++++.+++.|++.+.||.+++.+. ....+++.++++++.+++||+++|||+|.+|+++++ ..||++|++|++
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~---~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l-~~Ga~~Viigt~ 105 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSE---GRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLL-RAGADKVSINSA 105 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc---cCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHH-HcCCCEEEEChh
Confidence 3789999999999999999999987653 235789999999999999999999999999999999 589999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||++|.+
T Consensus 106 ~l~~p~~~~e 115 (253)
T PRK02083 106 AVANPELISE 115 (253)
T ss_pred HhhCcHHHHH
Confidence 9999999864
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-07 Score=91.01 Aligned_cols=199 Identities=20% Similarity=0.210 Sum_probs=124.8
Q ss_pred CCCchHHHHHHHHhCC-ccce-----eccccch--hhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcC
Q psy7343 158 DASELPWRLLSRRYGS-HLCY-----TPMVSAH--QFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHC 229 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga-~l~~-----t~~v~~~--~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~ 229 (487)
++++..-..++.+.|+ +++. +.+-... +-+.+++..+++.+. .+.||+-.+.-. .+.++-.+.+..+
T Consensus 14 ~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~--V~iPVIGi~K~~---~~~Ea~~L~eaGv 88 (283)
T cd04727 14 DVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDA--VSIPVMAKVRIG---HFVEAQILEALGV 88 (283)
T ss_pred EeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHh--CCCCeEEeeehh---HHHHHHHHHHcCC
Confidence 3455555678888885 3322 2222211 223456666665543 378999887621 1444444444446
Q ss_pred cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEc--c
Q psy7343 230 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG--R 307 (487)
Q Consensus 230 d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vhg--R 307 (487)
|.|| | +.+ .+| +.+++..+|...+.|+.+-+ +..+-+....+.|+|.|--++ -
T Consensus 89 DiID----a------T~r------~rP--~~~~~~~iK~~~~~l~MAD~-------stleEal~a~~~Gad~I~TTl~gy 143 (283)
T cd04727 89 DMID----E------SEV------LTP--ADEEHHIDKHKFKVPFVCGA-------RNLGEALRRISEGAAMIRTKGEAG 143 (283)
T ss_pred CEEe----c------cCC------CCc--HHHHHHHHHHHcCCcEEccC-------CCHHHHHHHHHCCCCEEEecCCCC
Confidence 6664 2 111 233 46777778877788888854 344455666778999885433 2
Q ss_pred ccC----------------CCCCC----------CCCCCHHHHHHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 308 TVD----------------QRGMN----------TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 308 t~~----------------~~g~~----------~g~~~~~~i~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~V 359 (487)
|.. .-.+| ...++|+.++++++..++||+ +.|||.|++++.+++ +.|||+|
T Consensus 144 T~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~-e~GAdgV 222 (283)
T cd04727 144 TGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMM-QLGADGV 222 (283)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHH-HcCCCEE
Confidence 221 00001 123689999999999999997 999999999999999 6999999
Q ss_pred EeccccccCcccccCCCCCcHHHHHHHHHHHHHcCh
Q psy7343 360 MTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPV 395 (487)
Q Consensus 360 miGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~~ 395 (487)
++|++++..+.. .+..+++.+.+..|..
T Consensus 223 aVGSAI~~a~dP--------~~~tk~f~~ai~~~~~ 250 (283)
T cd04727 223 FVGSGIFKSENP--------EKRARAIVEAVTHYDD 250 (283)
T ss_pred EEcHHhhcCCCH--------HHHHHHHHHHHHhcCC
Confidence 999998854322 2345566666666653
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.7e-08 Score=97.57 Aligned_cols=194 Identities=21% Similarity=0.255 Sum_probs=112.2
Q ss_pred CCccccccccCCCchHHH-HHHHHhCCccceeccccchhhhcChhHHHHHH--hcCCCCC--CeeeeeccCCHHHHHHHH
Q psy7343 148 SPRFILAPMVDASELPWR-LLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL--MSTPEDR--PLIIQFCGNDSKNLTEAA 222 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr-~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l--~~~~~~~--Pv~Vqi~g~d~~~~~~aa 222 (487)
+-|++.+||-.+|+..+. .+++..|.+++.-.+.. ......-++.++.. .....+. .|.+-+.. .++++..+.
T Consensus 37 ~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~-e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~-~~~~~er~~ 114 (352)
T PF00478_consen 37 KIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSI-EEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGT-RDDDFERAE 114 (352)
T ss_dssp SSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCH-HHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEES-STCHHHHHH
T ss_pred cCceEecCccccchHHHHHHHHHhcCCceecCCCCH-HHHHHHHhhhccccccccccccccceEEEEecC-CHHHHHHHH
Confidence 679999999999998876 45555554554432211 00011111111111 0111222 34444443 233455555
Q ss_pred HhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcE
Q psy7343 223 KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQL 301 (487)
Q Consensus 223 ~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~ 301 (487)
.+++...|.|-|... || +-+.+.+.++.+++..+ +||++- ++ -+.+.++.|.++|+|+
T Consensus 115 ~L~~agvD~ivID~a-------~g--------~s~~~~~~ik~ik~~~~~~~viaG-----NV-~T~e~a~~L~~aGad~ 173 (352)
T PF00478_consen 115 ALVEAGVDVIVIDSA-------HG--------HSEHVIDMIKKIKKKFPDVPVIAG-----NV-VTYEGAKDLIDAGADA 173 (352)
T ss_dssp HHHHTT-SEEEEE-S-------ST--------TSHHHHHHHHHHHHHSTTSEEEEE-----EE--SHHHHHHHHHTT-SE
T ss_pred HHHHcCCCEEEcccc-------Cc--------cHHHHHHHHHHHHHhCCCceEEec-----cc-CCHHHHHHHHHcCCCE
Confidence 555555666655422 22 34556677888888875 888763 33 4566777889999999
Q ss_pred EEEEccc-------cCCCCCCCCCCCHHHHHHHHh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 302 LAVHGRT-------VDQRGMNTGLASWEHITAVRK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 302 I~VhgRt-------~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
|.| |-+ +...| -|.+....+.++.+ ..++|||+.|||++.-|+.+.| ..|||.||+|+.|-.-
T Consensus 174 vkV-GiGpGsiCtTr~v~G--vG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAl-a~GAd~VMlG~llAgt 246 (352)
T PF00478_consen 174 VKV-GIGPGSICTTREVTG--VGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKAL-AAGADAVMLGSLLAGT 246 (352)
T ss_dssp EEE-SSSSSTTBHHHHHHS--BSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHH-HTT-SEEEESTTTTTB
T ss_pred EEE-eccCCcccccccccc--cCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeee-eecccceeechhhccC
Confidence 999 532 22221 13445555555544 4589999999999999999999 7999999999865544
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-07 Score=90.37 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=118.1
Q ss_pred CCccccccccCCCchHHHHHHHHhC-CccceeccccchhhhcChhHHHHHHhc-CC-CCCCeeeeeccCCHHHHHHHHHh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMS-TP-EDRPLIIQFCGNDSKNLTEAAKL 224 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~G-a~l~~t~~v~~~~Ll~~~~~~~~~l~~-~~-~~~Pv~Vqi~g~d~~~~~~aa~~ 224 (487)
.-|++.|.|..+++......-.+.| ..... . ..+.+...+.++. .+ ...-+.|.+ |-.++++..+..+
T Consensus 45 ~iPii~AnMdtv~~~~mA~~la~~g~~~~iH-k-------~~~~e~~~~~v~~~~~~~~~~~~vsv-G~~~~d~er~~~L 115 (343)
T TIGR01305 45 GVPIIAANMDTVGTFEMAAALSQHSIFTAIH-K-------HYSVDEWKAFATNSSPDCLQNVAVSS-GSSDNDLEKMTSI 115 (343)
T ss_pred CCceEecCCCcccCHHHHHHHHHCCCeEEEe-e-------CCCHHHHHHHHHhhcccccceEEEEe-ccCHHHHHHHHHH
Confidence 5689999999999887764444444 12211 1 1123333334432 11 122344433 3356677777777
Q ss_pred hCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEE
Q psy7343 225 AEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLL 302 (487)
Q Consensus 225 ~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I 302 (487)
++.. .|.|-|... || +-+.+.+.++.+|+..+-+.++++ ++.+ .+-++.+.++|+|+|
T Consensus 116 ~~a~~~~d~iviD~A-------hG--------hs~~~i~~ik~ir~~~p~~~viaG----NV~T-~e~a~~Li~aGAD~i 175 (343)
T TIGR01305 116 LEAVPQLKFICLDVA-------NG--------YSEHFVEFVKLVREAFPEHTIMAG----NVVT-GEMVEELILSGADIV 175 (343)
T ss_pred HhcCCCCCEEEEECC-------CC--------cHHHHHHHHHHHHhhCCCCeEEEe----cccC-HHHHHHHHHcCCCEE
Confidence 7653 566555432 23 356677888889988866777776 5544 445567778999999
Q ss_pred EEE-----ccccCCCCCCCCCCCHHHHHHHHhhC---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 303 AVH-----GRTVDQRGMNTGLASWEHITAVRKAL---TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 303 ~Vh-----gRt~~~~g~~~g~~~~~~i~~i~~~~---~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.|. .-+..+.. -.|.+.+..+.++.+.. ++|||+-|||++.-|+.+.+ ..|||+||+|.
T Consensus 176 kVgiGpGSicttR~~~-Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KAL-A~GAd~VMlG~ 242 (343)
T TIGR01305 176 KVGIGPGSVCTTRTKT-GVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAF-GAGADFVMLGG 242 (343)
T ss_pred EEcccCCCcccCceeC-CCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHH-HcCCCEEEECH
Confidence 872 01111211 12335677777776654 78999999999999999999 79999999994
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >KOG2333|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-08 Score=102.73 Aligned_cols=237 Identities=14% Similarity=0.199 Sum_probs=149.3
Q ss_pred HHHHHhCCccceeccc----cchhhhcChhHHHHHHhc---CCCCCCeeeeeccCC---HHHHHHHHHhhC-CcCcEEEe
Q psy7343 166 LLSRRYGSHLCYTPMV----SAHQFIADKKLRQEILMS---TPEDRPLIIQFCGND---SKNLTEAAKLAE-PHCDGIDI 234 (487)
Q Consensus 166 ~i~~~~Ga~l~~t~~v----~~~~Ll~~~~~~~~~l~~---~~~~~Pv~Vqi~g~d---~~~~~~aa~~~~-~~~d~Idi 234 (487)
.|+.|+| ||-.+| .|++|+.++.+...+++. .....|++||||... .....++...+. +.
T Consensus 349 FIDlN~G---CPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~new------ 419 (614)
T KOG2333|consen 349 FIDLNMG---CPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEW------ 419 (614)
T ss_pred eeeccCC---CChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhcc------
Confidence 3677889 555554 489999999988888863 344679999999422 223334444444 44
Q ss_pred ecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcC-CcEEEEEccccC
Q psy7343 235 NIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG-CQLLAVHGRTVD 310 (487)
Q Consensus 235 N~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G-~d~I~VhgRt~~ 310 (487)
| +..++.|||...+. .+||+.+.++.++++. .+||++|+ |+-+++|+.+.+...+ ++.||| ||++.
T Consensus 420 --g-~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~--~l~liGNG----Di~S~eDw~~~~~~~p~v~svMI-aRGAL 489 (614)
T KOG2333|consen 420 --G-ASAVTLHGRSRQQRYTKSANWDYIEECADKAKS--ALPLIGNG----DILSWEDWYERLNQNPNVDSVMI-ARGAL 489 (614)
T ss_pred --C-cceEEecCchhhhhhhcccChHHHHHHHHhccc--CceeEecC----ccccHHHHHHHhhcCCCcceEEe-ecccc
Confidence 4 36788899877764 6899999999887654 38999998 9999999999999998 999999 99877
Q ss_pred CCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHH--HHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHH
Q psy7343 311 QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVE--ACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388 (487)
Q Consensus 311 ~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~--~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~ 388 (487)
-++| .+.+|++.-.. ||+|.+-.. +-+-+.|.+....-+. + -......+.+++.
T Consensus 490 IKPW--------IFtEIkeqq~w------D~sSteRldiL~df~nyGLeHWGSDt~---------G-VetTRRFlLE~lS 545 (614)
T KOG2333|consen 490 IKPW--------IFTEIKEQQHW------DISSTERLDILKDFCNYGLEHWGSDTK---------G-VETTRRFLLEFLS 545 (614)
T ss_pred ccch--------HhhhhhhhhcC------CccchHHHHHHHHHHhhhhhhcCCccc---------c-HHHHHHHHHHHHH
Confidence 6655 34556554322 566666432 2221345444321110 0 0122455667777
Q ss_pred HHHHc-ChhHH-HHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhccccC
Q psy7343 389 LVAQY-PVRLQ-YARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRK 452 (487)
Q Consensus 389 ~~~~~-~~~~~-~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (487)
+..+| +.++. .++..+.+ .. ...-+++....|..+.+..++.++-+.+ +.++|||..
T Consensus 546 F~~RYiPv~l~e~lpqriN~--RP--p~y~gRdelETLm~S~ka~DWvkiSe~l---LGpvPegFt 604 (614)
T KOG2333|consen 546 FFHRYIPVGLLEVLPQRIND--RP--PLYTGRDELETLMSSQKAADWVKISEML---LGPVPEGFT 604 (614)
T ss_pred HHHhhchHHHhhcCchhhcc--CC--ccccchhHHHHHHhcccchhHHHHHHHH---cCCCCCCce
Confidence 77777 32222 22333321 10 0112345556667777777777666554 477788744
|
|
| >KOG0134|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-08 Score=99.30 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=117.4
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEee---
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIR--- 279 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR--- 279 (487)
.+.++.|++.+.++ ||+||||..+ |..+.+.+.||+.+.++.+++.|++++|++.++ .....-.+
T Consensus 173 ~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 173 VDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 35667788888565 9999999765 667889999999999999999999999999873 22222222
Q ss_pred ---cccccccHHHHHHHHHHcCCcEEEEEccccCCC-----CCCCCCC----CHHHHHHHHhhCCCcEE-EcCCCCCHHH
Q psy7343 280 ---IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-----GMNTGLA----SWEHITAVRKALTIPVI-ANGNIQCLAD 346 (487)
Q Consensus 280 ---~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-----g~~~g~~----~~~~i~~i~~~~~iPVi-~nGgI~s~~d 346 (487)
.+++.++....+..+++.|+|.+-+.|.+.... ...+... ..+....++...+.+++ ++|+.++.+.
T Consensus 253 fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~ 332 (400)
T KOG0134|consen 253 FQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREA 332 (400)
T ss_pred hhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHH
Confidence 124556778888999999999665544332210 0011111 23556667777778877 5678999999
Q ss_pred HHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+.+.++....|+|..||.+++||+|..++
T Consensus 333 ~~eav~~~~T~~ig~GR~f~anPDLp~rl 361 (400)
T KOG0134|consen 333 MVEAVKSGRTDLIGYGRPFLANPDLPKRL 361 (400)
T ss_pred HHHHHhcCCceeEEecchhccCCchhHHH
Confidence 99999777788999999999999997643
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.8e-07 Score=90.01 Aligned_cols=187 Identities=14% Similarity=0.152 Sum_probs=119.8
Q ss_pred CCccccccccCCCchHHHHHHHHhC-CccceeccccchhhhcChhHHHHHHhcCCC--CCCeeeeeccCCHHHHHHHHHh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMSTPE--DRPLIIQFCGNDSKNLTEAAKL 224 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~G-a~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~--~~Pv~Vqi~g~d~~~~~~aa~~ 224 (487)
.-|++.|+|..+++......-.+.| -.... . ..+.+...+.++.... ..-+.|.+ |-.++++..+..+
T Consensus 46 giPii~AnMdTV~~~~mA~~la~~g~~~~iH-k-------~~~~e~~~~fv~~~~~~~~~~~~vav-G~~~~d~er~~~L 116 (346)
T PRK05096 46 GVPIIAANMDTVGTFEMAKALASFDILTAVH-K-------HYSVEEWAAFVNNSSADVLKHVMVST-GTSDADFEKTKQI 116 (346)
T ss_pred CCceEecCCCccccHHHHHHHHHCCCeEEEe-c-------CCCHHHHHHHHHhccccccceEEEEe-cCCHHHHHHHHHH
Confidence 4689999999999887664444444 12211 0 0123333344432221 12344433 3456777777777
Q ss_pred hCC--cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcE
Q psy7343 225 AEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301 (487)
Q Consensus 225 ~~~--~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~ 301 (487)
++. ..|.|-|... || +-+.+.++++.+|+.. +++|++- ++. +.+.++.|.++|+|+
T Consensus 117 ~~~~~g~D~iviD~A-------hG--------hs~~~i~~ik~ik~~~P~~~vIaG-----NV~-T~e~a~~Li~aGAD~ 175 (346)
T PRK05096 117 LALSPALNFICIDVA-------NG--------YSEHFVQFVAKAREAWPDKTICAG-----NVV-TGEMVEELILSGADI 175 (346)
T ss_pred HhcCCCCCEEEEECC-------CC--------cHHHHHHHHHHHHHhCCCCcEEEe-----ccc-CHHHHHHHHHcCCCE
Confidence 774 3666655433 23 3566778888898876 5666653 443 455778899999999
Q ss_pred EEEEcc-------ccCCCCCCCCCCCHHHHHHHHh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 302 LAVHGR-------TVDQRGMNTGLASWEHITAVRK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 302 I~VhgR-------t~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
|-| |- |+...| -|.+.+..+.++.+ ..++|||+.|||++.-|+.+.+ ..|||.||+|+-+-..
T Consensus 176 vKV-GIGpGSiCtTr~vtG--vG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAl-aaGAd~VMlGsllAGt 248 (346)
T PRK05096 176 VKV-GIGPGSVCTTRVKTG--VGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAF-GGGADFVMLGGMLAGH 248 (346)
T ss_pred EEE-cccCCccccCccccc--cChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHH-HcCCCEEEeChhhcCc
Confidence 987 42 222221 23455666665544 4589999999999999999999 7999999999865554
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-08 Score=97.82 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=77.1
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.++++.+++.|++.++++...+... .+..+++.++++++.+++||+++|||+|.+|+++++ ..||+.|++|++
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~-~~Ga~~vivgt~ 105 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLL-RAGADKVSINTA 105 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEEChh
Confidence 3789999999999999999988766532 345789999999999999999999999999999999 689999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||+++.+
T Consensus 106 ~~~~p~~~~~ 115 (254)
T TIGR00735 106 AVKNPELIYE 115 (254)
T ss_pred HhhChHHHHH
Confidence 9999998764
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.5e-08 Score=92.57 Aligned_cols=103 Identities=24% Similarity=0.349 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE--EccccCCCCCCCCCCCHHHHHHHHhhCCCcE
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKALTIPV 335 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V--hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPV 335 (487)
.+.++++.+++..++++++.. ...+.+..+.+.|+|.+.+ +|++.... .....+++.++++++.+++||
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v-------~t~~ea~~a~~~G~d~i~~~~~g~t~~~~--~~~~~~~~~l~~i~~~~~ipv 180 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADI-------STLEEALNAAKLGFDIIGTTLSGYTEETA--KTEDPDFELLKELRKALGIPV 180 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEEC-------CCHHHHHHHHHcCCCEEEccCcccccccc--CCCCCCHHHHHHHHHhcCCCE
Confidence 566777777766568888865 2334457788899999976 45544332 233457899999999999999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+++|||.+++++.+++ ..|||+|++|++++...+
T Consensus 181 ia~GGI~~~~~~~~~l-~~GadgV~vGsal~~~~~ 214 (219)
T cd04729 181 IAEGRINSPEQAAKAL-ELGADAVVVGSAITRPEH 214 (219)
T ss_pred EEeCCCCCHHHHHHHH-HCCCCEEEEchHHhChHh
Confidence 9999999999999999 589999999999776544
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=92.54 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHH-----HHHHHHhhhccCcEE--EEeecccccc
Q psy7343 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT-----NLVSSLRQAVQVPVS--CKIRIYQDVN 285 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~-----eiv~~v~~~~~iPV~--vKiR~~~d~~ 285 (487)
.+.+++.++++.+++.+|.||||+-||....- |.......+... ++++++++.+++|+. ++. ..-..
T Consensus 15 p~~~~~~~~~~~l~~~ad~iElgip~sdp~ad----G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~--n~~~~ 88 (244)
T PRK13125 15 PNVESFKEFIIGLVELVDILELGIPPKYPKYD----GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYL--EDYVD 88 (244)
T ss_pred CCHHHHHHHHHHHHhhCCEEEECCCCCCCCCC----CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEec--chhhh
Confidence 47889999998876669999999999654221 333333444444 788999988899985 333 21234
Q ss_pred cHHHHHHHHHHcCCcEEEEEcc-----------------------------ccC--------C---------CCCCCCC-
Q psy7343 286 KTVEYARMLERAGCQLLAVHGR-----------------------------TVD--------Q---------RGMNTGL- 318 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgR-----------------------------t~~--------~---------~g~~~g~- 318 (487)
+..++++.+.++|+|+|++|.- |.. . .++..+.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~ 168 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPL 168 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCc
Confidence 6788888889999999998731 000 0 0111111
Q ss_pred -CC-HHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 319 -AS-WEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 319 -~~-~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.+ .+.++++++.. +.||+..|||+|.+++.+++ +.|||++.+|++++.
T Consensus 169 ~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~-~~gaD~vvvGSai~~ 219 (244)
T PRK13125 169 PVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDAL-SAGADGVVVGTAFIE 219 (244)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence 11 25777888877 58999999999999999998 689999999998774
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.7e-08 Score=93.96 Aligned_cols=86 Identities=31% Similarity=0.420 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|+|.+.|+.+++... ....+++.++++++.+++||+++|||++.+++++++ +.|||.|++|++
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~---~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~-~~Gad~vvigs~ 104 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG---GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLL-DLGVSRVIIGTA 104 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc---CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHH-HcCCCEEEECch
Confidence 4789999999999999999998765321 245689999999999999999999999999999999 689999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
.+.||+++.+
T Consensus 105 ~l~dp~~~~~ 114 (234)
T cd04732 105 AVKNPELVKE 114 (234)
T ss_pred HHhChHHHHH
Confidence 9999998764
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=91.10 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI 336 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi 336 (487)
+.+.++++.+++..++++++.. ...+.++.+.+.|+|.|.++.+............+++.++++++.+++||+
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v-------~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvi 177 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADC-------STLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVI 177 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeC-------CCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEE
Confidence 4456677777653477887754 233445788899999998743221111112234568999999999999999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.|||.|++++.+++ +.|||+|++|++++.
T Consensus 178 a~GGI~t~~~~~~~l-~~GadgV~iGsai~~ 207 (221)
T PRK01130 178 AEGRINTPEQAKKAL-ELGAHAVVVGGAITR 207 (221)
T ss_pred EECCCCCHHHHHHHH-HCCCCEEEEchHhcC
Confidence 999999999999999 689999999998764
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.9e-07 Score=93.35 Aligned_cols=80 Identities=24% Similarity=0.194 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcC-CcEEEEEccccCCCCCCCCC-CCH---HHHHHHHhhC--------CCcEEEcCCCCCHHHHHHHHHh
Q psy7343 287 TVEYARMLERAG-CQLLAVHGRTVDQRGMNTGL-ASW---EHITAVRKAL--------TIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 287 ~~e~a~~le~~G-~d~I~VhgRt~~~~g~~~g~-~~~---~~i~~i~~~~--------~iPVi~nGgI~s~~da~~~l~~ 353 (487)
+.+.++.+++.| +|.|++. . +.|+..+. ..+ ..+.++++.+ ++||++.|||.|++++..++ .
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq---~-EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~-a 239 (418)
T cd04742 165 TEEQAELARRVPVADDITVE---A-DSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAF-A 239 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEc---c-cCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHH-H
Confidence 345567777778 6999983 2 22334332 223 4444555444 69999999999999999999 7
Q ss_pred cCCcEEEeccccccCccc
Q psy7343 354 TGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~l 371 (487)
.|||+|++|+.++..+.-
T Consensus 240 lGAd~V~~GT~flat~Ea 257 (418)
T cd04742 240 LGADFIVTGSINQCTVEA 257 (418)
T ss_pred cCCcEEeeccHHHhCccc
Confidence 899999999999987653
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-07 Score=87.67 Aligned_cols=141 Identities=20% Similarity=0.229 Sum_probs=96.7
Q ss_pred eeeeecc-CCHHHHHHHHHhhCCcC--cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEE-EEeecc
Q psy7343 206 LIIQFCG-NDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVS-CKIRIY 281 (487)
Q Consensus 206 v~Vqi~g-~d~~~~~~aa~~~~~~~--d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~-vKiR~~ 281 (487)
+-.+..| .+.++.+..|+++.+.+ +.| ++-+.+. -..|+.|+....+-.+.+.+. ++-|. +-
T Consensus 65 ~lpNTaG~~ta~eAv~~a~lare~~~~~~i--------KlEVi~d-~~~Llpd~~~tv~aa~~L~~~-Gf~vlpyc---- 130 (248)
T cd04728 65 LLPNTAGCRTAEEAVRTARLAREALGTDWI--------KLEVIGD-DKTLLPDPIETLKAAEILVKE-GFTVLPYC---- 130 (248)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHhCCCeE--------EEEEecC-ccccccCHHHHHHHHHHHHHC-CCEEEEEe----
Confidence 3344444 57788888888887761 222 2333332 234555655544443333221 33333 21
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.+-...++.+++.|++.||.+|...... .|..+.+.++.+++..++|||+.|||.+++|+.+++ +.|||+|++
T Consensus 131 ---~dd~~~ar~l~~~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Am-elGAdgVlV 203 (248)
T cd04728 131 ---TDDPVLAKRLEDAGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-ELGADAVLL 203 (248)
T ss_pred ---CCCHHHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH-HcCCCEEEE
Confidence 1346778899999999999877654432 356679999999998999999999999999999999 699999999
Q ss_pred cccccc
Q psy7343 362 AEGNLY 367 (487)
Q Consensus 362 GRa~l~ 367 (487)
|+|+..
T Consensus 204 ~SAIt~ 209 (248)
T cd04728 204 NTAIAK 209 (248)
T ss_pred ChHhcC
Confidence 999874
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=97.44 Aligned_cols=111 Identities=23% Similarity=0.301 Sum_probs=83.8
Q ss_pred CChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC-C-----CCCCCCCHHHHHH
Q psy7343 254 DDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-G-----MNTGLASWEHITA 326 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g-----~~~g~~~~~~i~~ 326 (487)
.+++.+.++++.+++..+ +||++|+-.+ ....++++.++..|+|+|+|.|...... . ...|.+....+.+
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~---~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAG---HGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCC---CCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 356778899999999987 9999998332 1567888999888899999977632211 0 0123333445555
Q ss_pred HHhhC-------CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 327 VRKAL-------TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 327 i~~~~-------~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+.+.+ ++||+++|||+|..|+.+++ ..|||+|.+||+++.-
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kal-aLGAd~V~ig~~~l~a 320 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKAL-ALGADAVGIGTAALIA 320 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHH-HcCCCeeeechHHHHh
Confidence 55433 69999999999999999999 7899999999998853
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-07 Score=90.27 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=86.3
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEee-------c---cc--ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-------I---YQ--DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-------~---~~--d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~ 316 (487)
|+....+|+++.++.+...+.+ -+++-.| + || +..+..++++.+++.|+..|.++.-.+... .
T Consensus 103 gT~a~~~p~~~~~~~~~~g~~i--vvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt--~- 177 (243)
T TIGR01919 103 GTAALENPWWAAAVIRYGGDIV--AVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGL--S- 177 (243)
T ss_pred CchhhCCHHHHHHHHHHccccE--EEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCccc--C-
Confidence 4444578999998877654332 2222222 1 22 233688999999999999999965444332 3
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH--HhcCCcEEEeccccccCc
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACL--AQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l--~~~Gad~VmiGRa~l~~P 369 (487)
..++++.++++++..++|||++|||.|.+|+.++- +..|+++|++|++++.+-
T Consensus 178 ~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 178 GGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARF 232 (243)
T ss_pred CCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCC
Confidence 34789999999999999999999999999999873 346999999999988764
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >KOG0538|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.8e-07 Score=88.32 Aligned_cols=206 Identities=21% Similarity=0.200 Sum_probs=126.2
Q ss_pred CCccccccccC--CCchH-HHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHH
Q psy7343 148 SPRFILAPMVD--ASELP-WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAK 223 (487)
Q Consensus 148 ~~~~~lApma~--~td~~-fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~ 223 (487)
+.|+.+||-+- ..+.. =-..++..+ -+-++|+..+.-... .+++....+.. --..|+. -.|-+-..++.+
T Consensus 68 ~~Pi~iapTa~qkma~pdGE~~taraa~--~~~~~~i~Ss~at~S---~EdI~~aap~~-~rwfQLYvykdr~It~~Lv~ 141 (363)
T KOG0538|consen 68 SAPIMIAPTAMQKMAHPDGELATARAAQ--AAGTIMILSSWATCS---VEDIASAAPPG-IRWFQLYVYKDRDITEQLVK 141 (363)
T ss_pred cceeEEcchHHHhccCCcccHHHHHHHH--hcCCcEEEechhcCC---HHHHHhhCCCC-cEEEEEEecCchHHHHHHHH
Confidence 66888887542 11110 011222222 244566654332222 34444444333 3456666 356666677888
Q ss_pred hhCCc-CcEEEeecCCC----------------cceeecc-------------Ccccc--c--cCChHHHHHHHHHHhhh
Q psy7343 224 LAEPH-CDGIDINIGCP----------------QMVAKRG-------------HYGAY--L--QDDWPLLTNLVSSLRQA 269 (487)
Q Consensus 224 ~~~~~-~d~IdiN~GcP----------------~~i~~~g-------------r~G~~--l--~~d~~~i~eiv~~v~~~ 269 (487)
++|.+ |.++-+....| ..+..++ ..|.+ . .-|+.+-.+=++.++..
T Consensus 142 raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~ 221 (363)
T KOG0538|consen 142 RAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSI 221 (363)
T ss_pred HHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhc
Confidence 88876 66655443332 2111110 00000 0 12333333445567888
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHH
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADV 347 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da 347 (487)
++.|+++|+-+ +.+| ++...++|+++|+|+..+..|. -..++..+.+.++.+++ ++||...|||++..|+
T Consensus 222 T~LPIvvKGil-----t~eD-A~~Ave~G~~GIIVSNHGgRQl--D~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DV 293 (363)
T KOG0538|consen 222 TKLPIVVKGVL-----TGED-ARKAVEAGVAGIIVSNHGGRQL--DYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDV 293 (363)
T ss_pred CcCCeEEEeec-----ccHH-HHHHHHhCCceEEEeCCCcccc--CcccchHHHHHHHHHHhcCceEEEEecCcccchHH
Confidence 89999999733 3333 4566789999999976665565 34678889999999888 7999999999999999
Q ss_pred HHHHHhcCCcEEEeccccccC
Q psy7343 348 EACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.+.+ ..||.+|.+||+.+..
T Consensus 294 lKAL-ALGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 294 LKAL-ALGAKGVFIGRPIVWG 313 (363)
T ss_pred HHHH-hcccceEEecCchhee
Confidence 9999 7999999999977655
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-07 Score=89.41 Aligned_cols=146 Identities=23% Similarity=0.338 Sum_probs=96.3
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhh-hccCcEEEEee--c
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ-AVQVPVSCKIR--I 280 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~-~~~iPV~vKiR--~ 280 (487)
.++.+|+.|. ..+..++.+.++. |+ ..++. |+....||+.+.++.+..-. .+-+-+-++.. +
T Consensus 72 ~~~~i~vgGG-Irs~ed~~~ll~~---------Ga-~~Vvi----gt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v 136 (229)
T PF00977_consen 72 TGIPIQVGGG-IRSIEDAERLLDA---------GA-DRVVI----GTEALEDPELLEELAERYGSQRIVVSLDARDGYKV 136 (229)
T ss_dssp SSSEEEEESS-E-SHHHHHHHHHT---------T--SEEEE----SHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEE
T ss_pred CCccEEEeCc-cCcHHHHHHHHHh---------CC-CEEEe----ChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEE
Confidence 3467777752 2233344444443 33 23333 44456789999998887654 22222222221 1
Q ss_pred ---cccc---ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 281 ---YQDV---NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 281 ---~~d~---~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
+|.. .+..++++.+++.|+..+.++.=.+... ..| ++++.++++++.+++|||++|||.+.+|+.++. ..
T Consensus 137 ~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt--~~G-~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~-~~ 212 (229)
T PF00977_consen 137 ATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGT--MQG-PDLELLKQLAEAVNIPVIASGGVRSLEDLRELK-KA 212 (229)
T ss_dssp EETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTT--SSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHH-HT
T ss_pred EecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCC--cCC-CCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHH-HC
Confidence 2322 4789999999999999999965444433 334 689999999999999999999999999999999 79
Q ss_pred CCcEEEeccccccC
Q psy7343 355 GVAGVMTAEGNLYN 368 (487)
Q Consensus 355 Gad~VmiGRa~l~~ 368 (487)
|+++|.+|++++..
T Consensus 213 G~~gvivg~al~~g 226 (229)
T PF00977_consen 213 GIDGVIVGSALHEG 226 (229)
T ss_dssp TECEEEESHHHHTT
T ss_pred CCcEEEEehHhhCC
Confidence 99999999998654
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-08 Score=96.18 Aligned_cols=155 Identities=25% Similarity=0.379 Sum_probs=96.8
Q ss_pred CCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCC
Q psy7343 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRP 205 (487)
Q Consensus 132 ~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~P 205 (487)
.+.|+++|+.+. ++..+......+.+.+|..+..|+| |+.+... |..+..+++...++++. .....|
T Consensus 53 ~~~p~~~qi~g~----~~~~~~~aa~~~~~aG~d~ieln~g---~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~ 125 (231)
T cd02801 53 EERPLIVQLGGS----DPETLAEAAKIVEELGADGIDLNMG---CPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIP 125 (231)
T ss_pred cCCCEEEEEcCC----CHHHHHHHHHHHHhcCCCEEEEeCC---CCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCC
Confidence 578999998532 2222222111222223444445556 5544332 55677788877777752 223379
Q ss_pred eeeeec-cCCHH-HHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 206 LIIQFC-GNDSK-NLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 206 v~Vqi~-g~d~~-~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+++|++ +.+.+ +..++++.+++. .|.|.++.+-.. .++. ...+++.+. .+++.+++||++++
T Consensus 126 v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~-----~~~~--~~~~~~~~~----~i~~~~~ipvi~~G---- 190 (231)
T cd02801 126 VTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTRE-----QRYS--GPADWDYIA----EIKEAVSIPVIANG---- 190 (231)
T ss_pred EEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHH-----HcCC--CCCCHHHHH----HHHhCCCCeEEEeC----
Confidence 999998 44444 778888888776 677776643211 0011 123555544 46667899999998
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
++.+..++.+.++..|+|+|++ ||..
T Consensus 191 gi~~~~d~~~~l~~~gad~V~i-gr~~ 216 (231)
T cd02801 191 DIFSLEDALRCLEQTGVDGVMI-GRGA 216 (231)
T ss_pred CCCCHHHHHHHHHhcCCCEEEE-cHHh
Confidence 7778899999888889999999 8853
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=86.36 Aligned_cols=144 Identities=22% Similarity=0.226 Sum_probs=97.7
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCC----hHHHHHHHHHH-hhhccCcEEEE-
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD----WPLLTNLVSSL-RQAVQVPVSCK- 277 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d----~~~i~eiv~~v-~~~~~iPV~vK- 277 (487)
.++.+|+.|.-- . .++.+.++. |+ ..++. |+....| |+++.++++.. .+.+-+-+-+|
T Consensus 82 ~~~~vqvGGGIR-~-e~i~~~l~~---------Ga-~rVii----gT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~ 145 (262)
T PLN02446 82 YPGGLQVGGGVN-S-ENAMSYLDA---------GA-SHVIV----TSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK 145 (262)
T ss_pred CCCCEEEeCCcc-H-HHHHHHHHc---------CC-CEEEE----chHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 347788886432 2 444445544 33 33333 3333345 99999988877 33332223333
Q ss_pred --e--ec---ccc---cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHH
Q psy7343 278 --I--RI---YQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADV 347 (487)
Q Consensus 278 --i--R~---~~d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da 347 (487)
+ ++ ||. ..+..+++..+.+.|+..|.++.-.+.. ....++.+.++++.+.+++|||++|||.|.+|+
T Consensus 146 ~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDG---tl~G~d~el~~~l~~~~~ipVIASGGv~sleDi 222 (262)
T PLN02446 146 KDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEG---KRLGIDEELVALLGEHSPIPVTYAGGVRSLDDL 222 (262)
T ss_pred cCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCC---cccCCCHHHHHHHHhhCCCCEEEECCCCCHHHH
Confidence 1 11 232 2367888888899999999995544433 233468999999999999999999999999999
Q ss_pred HHHHHhc-CCcEEEeccccc
Q psy7343 348 EACLAQT-GVAGVMTAEGNL 366 (487)
Q Consensus 348 ~~~l~~~-Gad~VmiGRa~l 366 (487)
.++.+.. |+.+|.+|++++
T Consensus 223 ~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 223 ERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred HHHHHcCCCCEEEEEEeeHH
Confidence 9998543 789999999984
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=84.05 Aligned_cols=142 Identities=19% Similarity=0.218 Sum_probs=95.0
Q ss_pred Ceeeeecc-CCHHHHHHHHHhhCCcC--cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEE-EEeec
Q psy7343 205 PLIIQFCG-NDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVS-CKIRI 280 (487)
Q Consensus 205 Pv~Vqi~g-~d~~~~~~aa~~~~~~~--d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~-vKiR~ 280 (487)
.+-.+..| .+.++.+..|+++.+.+ +.| ++-+.+. -..++.|.....+-.+.+.+. ++-|. +-
T Consensus 64 ~~lpNTaG~~ta~eAv~~a~lare~~~~~~i--------KlEVi~d-~~~llpd~~~tv~aa~~L~~~-Gf~vlpyc--- 130 (250)
T PRK00208 64 TLLPNTAGCRTAEEAVRTARLAREALGTNWI--------KLEVIGD-DKTLLPDPIETLKAAEILVKE-GFVVLPYC--- 130 (250)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHhCCCeE--------EEEEecC-CCCCCcCHHHHHHHHHHHHHC-CCEEEEEe---
Confidence 34444444 57788888888887762 222 2223222 122344554443333333211 33333 21
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
.+....++.+++.|++.||.+|..-... .|..+.+.++.+++..++|||+.|||.+++|+.+++ +.|||+|+
T Consensus 131 ----~~d~~~ak~l~~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Am-elGAdgVl 202 (250)
T PRK00208 131 ----TDDPVLAKRLEEAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAM-ELGADAVL 202 (250)
T ss_pred ----CCCHHHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEE
Confidence 1346778899999999999877654432 356678999999998899999999999999999999 69999999
Q ss_pred ecccccc
Q psy7343 361 TAEGNLY 367 (487)
Q Consensus 361 iGRa~l~ 367 (487)
+|+|+..
T Consensus 203 V~SAItk 209 (250)
T PRK00208 203 LNTAIAV 209 (250)
T ss_pred EChHhhC
Confidence 9999874
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-06 Score=90.35 Aligned_cols=95 Identities=28% Similarity=0.382 Sum_probs=77.0
Q ss_pred HHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-----CCCHHHHHHHHhhCC-CcEEE
Q psy7343 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-----LASWEHITAVRKALT-IPVIA 337 (487)
Q Consensus 264 ~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-----~~~~~~i~~i~~~~~-iPVi~ 337 (487)
+.++. .++.|..++ .....++..++.|+|+|+++|-.. |+..| .....++.++++.++ ||||+
T Consensus 121 ~~~~~-~g~~v~~~v-------~~~~~A~~~~~~G~d~vI~~g~eA---GGH~g~~~~~~~t~~Lv~ev~~~~~~iPViA 189 (336)
T COG2070 121 ARLKA-AGIKVIHSV-------ITVREALKAERAGADAVIAQGAEA---GGHRGGVDLEVSTFALVPEVVDAVDGIPVIA 189 (336)
T ss_pred HHHHH-cCCeEEEEe-------CCHHHHHHHHhCCCCEEEecCCcC---CCcCCCCCCCccHHHHHHHHHHHhcCCCEEE
Confidence 33443 578888887 678889999999999999966422 23433 223588999999999 99999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.|||.+.+++..++ ..|||+|++|+.++....
T Consensus 190 AGGI~dg~~i~AAl-alGA~gVq~GT~Fl~t~E 221 (336)
T COG2070 190 AGGIADGRGIAAAL-ALGADGVQMGTRFLATKE 221 (336)
T ss_pred ecCccChHHHHHHH-HhccHHHHhhhhhhcccc
Confidence 99999999999999 799999999999987754
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-07 Score=94.57 Aligned_cols=178 Identities=16% Similarity=0.085 Sum_probs=104.8
Q ss_pred CCceEEecCCCCC------CHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcc
Q psy7343 78 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRF 151 (487)
Q Consensus 78 ~~~~~LAPMag~t------d~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~ 151 (487)
+.|+++|||++.+ +..+++.|.++|+..++++|... . .+.+... .+.|+.+|+... .++ .
T Consensus 64 ~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~------~---~~~i~~~-~~~~~~~ql~~~---~~~-~ 129 (299)
T cd02809 64 AMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTT------S---LEEVAAA-APGPRWFQLYVP---RDR-E 129 (299)
T ss_pred CCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcC------C---HHHHHHh-cCCCeEEEEeec---CCH-H
Confidence 5689999998886 78999999999999999988732 1 1111111 237999997432 111 1
Q ss_pred ccccccCCCchHHHHHHHHhCCcc------ceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhh
Q psy7343 152 ILAPMVDASELPWRLLSRRYGSHL------CYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLA 225 (487)
Q Consensus 152 ~lApma~~td~~fr~i~~~~Ga~l------~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~ 225 (487)
.... .. ......|++. |+.+... ...+...++.+ ..+.||++|... ++ +.++.+
T Consensus 130 ~~~~-------~i-~~~~~~g~~~i~l~~~~p~~~~~-----~~~~~i~~l~~--~~~~pvivK~v~-s~----~~a~~a 189 (299)
T cd02809 130 ITED-------LL-RRAEAAGYKALVLTVDTPVLGRR-----LTWDDLAWLRS--QWKGPLILKGIL-TP----EDALRA 189 (299)
T ss_pred HHHH-------HH-HHHHHcCCCEEEEecCCCCCCCC-----CCHHHHHHHHH--hcCCCEEEeecC-CH----HHHHHH
Confidence 1110 01 1223345432 2221111 12223333332 224799999542 22 335555
Q ss_pred CCc-CcEEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcE
Q psy7343 226 EPH-CDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301 (487)
Q Consensus 226 ~~~-~d~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~ 301 (487)
++. +|+|.++. + +|.++ ...++.+.++.+.+.. ++||++.+ ++.+..++++.+. .|+|+
T Consensus 190 ~~~G~d~I~v~~-~---------gG~~~~~g~~~~~~l~~i~~~~~~--~ipvia~G----GI~~~~d~~kal~-lGAd~ 252 (299)
T cd02809 190 VDAGADGIVVSN-H---------GGRQLDGAPATIDALPEIVAAVGG--RIEVLLDG----GIRRGTDVLKALA-LGADA 252 (299)
T ss_pred HHCCCCEEEEcC-C---------CCCCCCCCcCHHHHHHHHHHHhcC--CCeEEEeC----CCCCHHHHHHHHH-cCCCE
Confidence 555 77777752 1 11111 3456666665544321 58999998 8889999999996 99999
Q ss_pred EEEEcc
Q psy7343 302 LAVHGR 307 (487)
Q Consensus 302 I~VhgR 307 (487)
|++ ||
T Consensus 253 V~i-g~ 257 (299)
T cd02809 253 VLI-GR 257 (299)
T ss_pred EEE-cH
Confidence 999 77
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.2e-07 Score=86.33 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=84.7
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeec------ccc---cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI------YQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~------~~d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~ 319 (487)
|+....||+++.++.+...+. +-+++-.|- +|. ..+..++++.+++.|+..+.+..-.+.. .....
T Consensus 105 gt~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dG---t~~G~ 179 (234)
T PRK13587 105 GTKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDG---KMSGP 179 (234)
T ss_pred CchHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcC---CCCcc
Confidence 555567899999987765332 222222221 221 2356999999999999999884433332 33347
Q ss_pred CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 320 ~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+++.++++.+.+++||++.|||+|.+|+.+++ +.|+++|.+|++++.
T Consensus 180 ~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~-~~G~~~vivG~a~~~ 226 (234)
T PRK13587 180 NFELTGQLVKATTIPVIASGGIRHQQDIQRLA-SLNVHAAIIGKAAHQ 226 (234)
T ss_pred CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEhHHHHh
Confidence 89999999999999999999999999999999 689999999999876
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-07 Score=85.39 Aligned_cols=105 Identities=22% Similarity=0.328 Sum_probs=73.8
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE--EccccCCCCCCCCCCCHHHHHHHHhhC
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKAL 331 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V--hgRt~~~~g~~~g~~~~~~i~~i~~~~ 331 (487)
.+|+.+.++++.+++.. ..+.+-+ +..+-+....+.|+|.|-- .|-|....+ ..+|+++++++++.
T Consensus 76 ~Rp~~l~~li~~i~~~~-~l~MADi-------st~ee~~~A~~~G~D~I~TTLsGYT~~t~~---~~pD~~lv~~l~~~- 143 (192)
T PF04131_consen 76 PRPETLEELIREIKEKY-QLVMADI-------STLEEAINAAELGFDIIGTTLSGYTPYTKG---DGPDFELVRELVQA- 143 (192)
T ss_dssp S-SS-HHHHHHHHHHCT-SEEEEE--------SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT---SSHHHHHHHHHHHT-
T ss_pred CCCcCHHHHHHHHHHhC-cEEeeec-------CCHHHHHHHHHcCCCEEEcccccCCCCCCC---CCCCHHHHHHHHhC-
Confidence 35678899999999886 6677654 4556667888999998843 233333321 45789999999986
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
++|||+-|+|.|++++.+++ +.||++|.||.+ +-+|+..
T Consensus 144 ~~pvIaEGri~tpe~a~~al-~~GA~aVVVGsA-ITrP~~I 182 (192)
T PF04131_consen 144 DVPVIAEGRIHTPEQAAKAL-ELGAHAVVVGSA-ITRPQEI 182 (192)
T ss_dssp TSEEEEESS--SHHHHHHHH-HTT-SEEEE-HH-HH-HHHH
T ss_pred CCcEeecCCCCCHHHHHHHH-hcCCeEEEECcc-cCCHHHH
Confidence 99999999999999999999 799999999975 5566553
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.2e-06 Score=88.98 Aligned_cols=79 Identities=23% Similarity=0.186 Sum_probs=56.9
Q ss_pred HHHHHHHHHcC-CcEEEEEccccCCCCCCCCC-CCHHHHHHH---HhhC--------CCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 288 VEYARMLERAG-CQLLAVHGRTVDQRGMNTGL-ASWEHITAV---RKAL--------TIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 288 ~e~a~~le~~G-~d~I~VhgRt~~~~g~~~g~-~~~~~i~~i---~~~~--------~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
.+-++.+++.| +|.|++ . . +.|+.++. ..+.++..+ ++.+ ++||++.|||.|++++..++ ..
T Consensus 171 ~eEA~~a~~~g~aD~Ivv-e--~-EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAl-aL 245 (444)
T TIGR02814 171 REEAELARRVPVADDICV-E--A-DSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAF-ML 245 (444)
T ss_pred HHHHHHHHhCCCCcEEEE-e--c-cCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHH-Hc
Confidence 44456777777 588888 3 2 22334332 233444444 4544 79999999999999999999 78
Q ss_pred CCcEEEeccccccCccc
Q psy7343 355 GVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~l 371 (487)
|||+|++|+.++..+.-
T Consensus 246 GAdgV~~GT~flat~Es 262 (444)
T TIGR02814 246 GADFIVTGSVNQCTVEA 262 (444)
T ss_pred CCcEEEeccHHHhCccc
Confidence 99999999999987653
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-06 Score=92.38 Aligned_cols=133 Identities=18% Similarity=0.184 Sum_probs=88.9
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
.++....+..+++...|.|-|.+. || +-..+.+.++.+++.. +.+|+++ ++ .+.+.++
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~-------~g--------~~~~~~~~i~~ik~~~p~~~vi~g-----~v-~t~e~a~ 304 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSS-------QG--------DSIYQLEMIKYIKKTYPELDVIGG-----NV-VTMYQAQ 304 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCC-------CC--------CcHHHHHHHHHHHHhCCCCcEEEe-----cC-CCHHHHH
Confidence 345555555666655777666542 22 2333445666777766 5777764 44 3455577
Q ss_pred HHHHcCCcEEEEEc-c-----ccCCCC-CCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 293 MLERAGCQLLAVHG-R-----TVDQRG-MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 293 ~le~~G~d~I~Vhg-R-----t~~~~g-~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
.+.++|+|+|.|.. . |+...+ +......+..+.++.+..++|||+.|||.+..|+.+++ ..||++||+|+.+
T Consensus 305 ~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAl-a~GA~~V~vGs~~ 383 (505)
T PLN02274 305 NLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKAL-TLGASTVMMGSFL 383 (505)
T ss_pred HHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEchhh
Confidence 78889999998821 1 111110 11112245567777878899999999999999999999 7899999999988
Q ss_pred ccC
Q psy7343 366 LYN 368 (487)
Q Consensus 366 l~~ 368 (487)
..-
T Consensus 384 ~~t 386 (505)
T PLN02274 384 AGT 386 (505)
T ss_pred ccc
Confidence 765
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-06 Score=83.24 Aligned_cols=116 Identities=30% Similarity=0.470 Sum_probs=81.2
Q ss_pred CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE--------------
Q psy7343 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV-------------- 304 (487)
Q Consensus 239 P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V-------------- 304 (487)
|..+...| |-+.+.||..+.+|+. +++|||.+|.|+|- .-.++.|+..|+|.|.=
T Consensus 51 PaDiR~aG--GVaRMaDp~~i~eim~----aVsIPVMAKvRIGH-----~~EA~iLealgVD~IDESEVLTPAD~~~Hi~ 119 (296)
T COG0214 51 PADIRAAG--GVARMADPKMIEEIMD----AVSIPVMAKVRIGH-----FVEAQILEALGVDMIDESEVLTPADEEFHIN 119 (296)
T ss_pred cHHHHhcc--CccccCCHHHHHHHHH----hcccceeeeeecch-----hHHHHHHHHhCCCccccccccCCCchhhhcc
Confidence 55544433 5567899999998776 46899999999983 23467899999998831
Q ss_pred ---------Ec------------------cccCCCCCCCCC----------------------------------CCHHH
Q psy7343 305 ---------HG------------------RTVDQRGMNTGL----------------------------------ASWEH 323 (487)
Q Consensus 305 ---------hg------------------Rt~~~~g~~~g~----------------------------------~~~~~ 323 (487)
.| ||+.+. -+|. +-+++
T Consensus 120 K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEa--GTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~el 197 (296)
T COG0214 120 KWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEA--GTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYEL 197 (296)
T ss_pred hhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCC--CCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHH
Confidence 11 222221 1111 12355
Q ss_pred HHHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 324 ITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 324 i~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++++++.-++||+ +.|||.|+.|+.-++ ..|||||.+|.|++..
T Consensus 198 v~~~~~~grLPVvnFAAGGvATPADAALMM-~LGadGVFVGSGIFKS 243 (296)
T COG0214 198 VKEVAKLGRLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKS 243 (296)
T ss_pred HHHHHHhCCCCeEeecccCcCChhHHHHHH-HhCCCeEEecccccCC
Confidence 5566666678875 899999999999998 7999999999996543
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-06 Score=91.28 Aligned_cols=134 Identities=22% Similarity=0.250 Sum_probs=93.4
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
.++.+.++..+++..+|.|.|+... | +-+.+.+.++.+++.. ++||++. ++ ...+-++
T Consensus 222 ~~~~~~r~~~L~~aG~d~I~vd~a~-------g--------~~~~~~~~i~~i~~~~~~~~vi~G-----~v-~t~~~a~ 280 (450)
T TIGR01302 222 REFDKERAEALVKAGVDVIVIDSSH-------G--------HSIYVIDSIKEIKKTYPDLDIIAG-----NV-ATAEQAK 280 (450)
T ss_pred chhHHHHHHHHHHhCCCEEEEECCC-------C--------cHhHHHHHHHHHHHhCCCCCEEEE-----eC-CCHHHHH
Confidence 3456666666676668888887654 1 1234566777788774 7899884 34 3455667
Q ss_pred HHHHcCCcEEEEE-ccc-----cCCCCCCCCCCCHHHHHHHHh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 293 MLERAGCQLLAVH-GRT-----VDQRGMNTGLASWEHITAVRK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 293 ~le~~G~d~I~Vh-gRt-----~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+.++|+|+|.|. |.+ +... -.|.+....+.++.+ ..++|||+.|||+++.|+.+++ ..||+.||+|+
T Consensus 281 ~l~~aGad~i~vg~g~G~~~~t~~~~--~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAl-a~GA~~V~~G~ 357 (450)
T TIGR01302 281 ALIDAGADGLRVGIGPGSICTTRIVA--GVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKAL-AAGADAVMLGS 357 (450)
T ss_pred HHHHhCCCEEEECCCCCcCCccceec--CCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEECc
Confidence 7788999999872 221 2111 123445566666644 3589999999999999999999 78999999999
Q ss_pred ccccCccc
Q psy7343 364 GNLYNPAL 371 (487)
Q Consensus 364 a~l~~P~l 371 (487)
.+....+-
T Consensus 358 ~~a~~~e~ 365 (450)
T TIGR01302 358 LLAGTTES 365 (450)
T ss_pred hhhcCCcC
Confidence 87666443
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-06 Score=90.68 Aligned_cols=132 Identities=22% Similarity=0.277 Sum_probs=89.0
Q ss_pred cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHH
Q psy7343 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~ 290 (487)
+..++....+..+++...|.|.|+.. ||. .....+.++.+++.. +++|++. ++. ..+-
T Consensus 237 g~~~~~~~~~~~l~~ag~d~i~id~a-------~G~--------s~~~~~~i~~ik~~~~~~~v~aG-----~V~-t~~~ 295 (495)
T PTZ00314 237 STRPEDIERAAALIEAGVDVLVVDSS-------QGN--------SIYQIDMIKKLKSNYPHVDIIAG-----NVV-TADQ 295 (495)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEecC-------CCC--------chHHHHHHHHHHhhCCCceEEEC-----CcC-CHHH
Confidence 44566655555566666888888864 332 222345666677765 6788773 343 4455
Q ss_pred HHHHHHcCCcEEEEEcc-------ccCCCCCCCCCCCHHHHHHHH---hhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 291 ARMLERAGCQLLAVHGR-------TVDQRGMNTGLASWEHITAVR---KALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 291 a~~le~~G~d~I~VhgR-------t~~~~g~~~g~~~~~~i~~i~---~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
++.+.++|+|+|.+ |- |+... -.|.+....+.++. +..++|||+.|||.++.|+.+++ ..|||+||
T Consensus 296 a~~~~~aGad~I~v-g~g~Gs~~~t~~~~--~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAl-a~GA~~Vm 371 (495)
T PTZ00314 296 AKNLIDAGADGLRI-GMGSGSICITQEVC--AVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKAL-ALGADCVM 371 (495)
T ss_pred HHHHHHcCCCEEEE-CCcCCcccccchhc--cCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH-HcCCCEEE
Confidence 67788899999987 31 11111 12344555555544 44589999999999999999999 79999999
Q ss_pred eccccccC
Q psy7343 361 TAEGNLYN 368 (487)
Q Consensus 361 iGRa~l~~ 368 (487)
+|+.+...
T Consensus 372 ~G~~~a~~ 379 (495)
T PTZ00314 372 LGSLLAGT 379 (495)
T ss_pred ECchhccc
Confidence 99987664
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=85.34 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=82.8
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeec------cc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI------YQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~------~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~ 319 (487)
|+....||+++.++ ...-+. +-+++-.|- +| ...+..++++.+++.|+..|.+..-.+... ..| +
T Consensus 102 gT~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt--~~G-~ 175 (241)
T PRK14114 102 SSKVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGT--LQE-H 175 (241)
T ss_pred CchhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhc--CCC-c
Confidence 45456789998887 333222 222222211 22 223679999999999999999843333322 333 7
Q ss_pred CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh----cC-CcEEEeccccccCc
Q psy7343 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQ----TG-VAGVMTAEGNLYNP 369 (487)
Q Consensus 320 ~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~----~G-ad~VmiGRa~l~~P 369 (487)
+++.++++++..++|||++|||.|.+|+.++.+. .| +++|.+|++++.+-
T Consensus 176 d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~ 230 (241)
T PRK14114 176 DFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGI 230 (241)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCC
Confidence 8999999999999999999999999999999853 25 99999999987763
|
|
| >KOG1799|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-07 Score=90.35 Aligned_cols=193 Identities=19% Similarity=0.272 Sum_probs=135.8
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC 276 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v 276 (487)
.+.|+.+-|. -++...+.+++...+++ .|..|+|+.||...-.+| .|.++-.+|....|+...|+....||++.
T Consensus 200 ~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~erg-mgla~gq~p~v~~EvC~Wi~A~~~Ip~~~ 278 (471)
T KOG1799|consen 200 NVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERG-MGLALGQCPIVDCEVCGWINAKATIPMVS 278 (471)
T ss_pred ccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCcccc-ccceeccChhhhHHHhhhhhhcccccccc
Confidence 3456655543 35667788888888887 899999999997654444 46777789999999999999989999999
Q ss_pred EeecccccccHHHHHHHHHHcCCcEEEEEc-------------cc------cCCCCCCCCCCCH----HHHHHHHhhC-C
Q psy7343 277 KIRIYQDVNKTVEYARMLERAGCQLLAVHG-------------RT------VDQRGMNTGLASW----EHITAVRKAL-T 332 (487)
Q Consensus 277 KiR~~~d~~~~~e~a~~le~~G~d~I~Vhg-------------Rt------~~~~g~~~g~~~~----~~i~~i~~~~-~ 332 (487)
|+ .+++.+..+.++.....||.+|.... |. +...|+|++.+-. ..+..|.+.+ .
T Consensus 279 km--TPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~~ 356 (471)
T KOG1799|consen 279 KM--TPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMKE 356 (471)
T ss_pred cc--CCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhhc
Confidence 97 44566778888888899988885311 10 1123456665532 3334444444 7
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHHHH
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP-VRLQYARGHV 404 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~~l 404 (487)
.|+.+.|||.|..|+.+++ ..|+.-|++.+|.+..-+-.- ...-.++-+++.+++ ..+.++|+|-
T Consensus 357 F~l~~~GGvEt~~~~~~Fi-l~Gs~~vQVCt~V~~~~~~~V------~~~Ca~LK~~m~~~~~~ti~~~~G~S 422 (471)
T KOG1799|consen 357 FSLSGIGGVETGYDAAEFI-LLGSNTVQVCTGVMMHGYGHV------KTLCAELKDFMKQHNFSTIEEFRGHS 422 (471)
T ss_pred CccccccCcccccchhhHh-hcCCcHhhhhhHHHhcCcchH------HHHHHHHHHHHHHcCchhhhhccCcc
Confidence 8999999999999999999 799999999998776543211 112223344555553 3456677774
|
|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.5e-06 Score=85.06 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=105.8
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEee
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIR 279 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR 279 (487)
...|+..++.+.+++++.+.++.+ +..|+.|.||+|. +++...+.++++++.++ +++.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD~n 185 (316)
T cd03319 122 RPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVDAN 185 (316)
T ss_pred CCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEeCC
Confidence 456777888877888887766544 4458999998764 22334566777777664 77888887
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+++..+..++++.+++.|+++|- +. +. ..+++.++++++.+++||++++.+.+.+++.++++..++|.|
T Consensus 186 ~~~~~~~A~~~~~~l~~~~l~~iE-------eP--~~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v 255 (316)
T cd03319 186 QGWTPEEAVELLRELAELGVELIE-------QP--VP-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGI 255 (316)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEE-------CC--CC-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEE
Confidence 788888899999999999998882 21 32 457899999999999999999999999999999988889999
Q ss_pred Eec
Q psy7343 360 MTA 362 (487)
Q Consensus 360 miG 362 (487)
++-
T Consensus 256 ~~~ 258 (316)
T cd03319 256 NIK 258 (316)
T ss_pred EEe
Confidence 764
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=88.70 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=76.4
Q ss_pred chhhhcChhHHHHHHh--cCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcc-eee-------ccCcccc
Q psy7343 183 AHQFIADKKLRQEILM--STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM-VAK-------RGHYGAY 251 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~-i~~-------~gr~G~~ 251 (487)
+..+.++++...++++ +...+.||+||+.. +.++..++++.++++ .|+|++.-.-+.. +.. ...+|+.
T Consensus 135 g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~ 213 (301)
T PRK07259 135 GMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGL 213 (301)
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCcc
Confidence 4566778888877775 22337899999985 445777888888776 7888763211110 000 0011111
Q ss_pred -ccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 252 -LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 252 -l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.........+.+..+++.+++||++.+ ++.+..++.+.+. +|+|.|++ +|.
T Consensus 214 sg~~~~p~~l~~v~~i~~~~~ipvi~~G----GI~~~~da~~~l~-aGAd~V~i-gr~ 265 (301)
T PRK07259 214 SGPAIKPIALRMVYQVYQAVDIPIIGMG----GISSAEDAIEFIM-AGASAVQV-GTA 265 (301)
T ss_pred CCcCcccccHHHHHHHHHhCCCCEEEEC----CCCCHHHHHHHHH-cCCCceeE-cHH
Confidence 011112344556667777899999998 6778888888885 89999999 874
|
|
| >KOG1606|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=81.90 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=40.1
Q ss_pred HHHHHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEEEeccccccCccccc
Q psy7343 322 EHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 322 ~~i~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
+++++.++.-++||+ +.|||.|+.|+.-++ +.|||||.+|.|.+..++-++
T Consensus 197 dLv~~t~q~GrlPVV~FAaGGvaTPADAALmM-QLGCdGVFVGSgiFks~dP~k 249 (296)
T KOG1606|consen 197 DLVKQTKQLGRLPVVNFAAGGVATPADAALMM-QLGCDGVFVGSGIFKSGDPVK 249 (296)
T ss_pred HHHHHHHHcCCCceEEecccCcCChhHHHHHH-HcCCCeEEeccccccCCCHHH
Confidence 444444555578885 899999999999998 799999999999877665543
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.1e-06 Score=78.11 Aligned_cols=76 Identities=26% Similarity=0.402 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCcEEEEEccccCC--CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQ--RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~--~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+.++.+++.|+|+|++ |..... ..++ ....++.++++++.+++||++.||| +.+++.+++ ..|+|+|++|+++.
T Consensus 106 e~a~~a~~~Gadyi~~-g~v~~t~~k~~~-~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~-~~Ga~gvav~s~i~ 181 (201)
T PRK07695 106 EEAIQAEKNGADYVVY-GHVFPTDCKKGV-PARGLEELSDIARALSIPVIAIGGI-TPENTRDVL-AAGVSGIAVMSGIF 181 (201)
T ss_pred HHHHHHHHcCCCEEEE-CCCCCCCCCCCC-CCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHH-HcCCCEEEEEHHHh
Confidence 3456778899999987 543221 1111 2346899999999999999999999 899999999 69999999999988
Q ss_pred cC
Q psy7343 367 YN 368 (487)
Q Consensus 367 ~~ 368 (487)
..
T Consensus 182 ~~ 183 (201)
T PRK07695 182 SS 183 (201)
T ss_pred cC
Confidence 54
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.6e-07 Score=84.87 Aligned_cols=88 Identities=23% Similarity=0.359 Sum_probs=76.1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..++.++++...+.|+|.+++-.-|....+ ....++.++++.+.+.||+...|||+|.+|+.++| ..|||-|.|.
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs~~g---r~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll-~aGADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITASSEG---RETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLL-RAGADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEeccccccc---chhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHH-HcCCCeeeeC
Confidence 4558899999999999999987555544321 23568999999999999999999999999999999 8999999999
Q ss_pred cccccCcccccC
Q psy7343 363 EGNLYNPALFTG 374 (487)
Q Consensus 363 Ra~l~~P~lf~~ 374 (487)
++++.||.|+++
T Consensus 104 saAv~~p~lI~~ 115 (256)
T COG0107 104 SAAVKDPELITE 115 (256)
T ss_pred hhHhcChHHHHH
Confidence 999999999764
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-05 Score=75.43 Aligned_cols=150 Identities=21% Similarity=0.309 Sum_probs=106.8
Q ss_pred HHhcCCC-CCCeeeeeccCC----HHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh
Q psy7343 196 ILMSTPE-DRPLIIQFCGND----SKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269 (487)
Q Consensus 196 ~l~~~~~-~~Pv~Vqi~g~d----~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~ 269 (487)
..+.... +.|+++++...+ .++..+.++.+++. +|+|.+.. |. +.....+.+.+.+.++.+.+.
T Consensus 40 ~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~--------~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 40 AADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI--------GSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred HHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH--------HHHhCCCHHHHHHHHHHHHHH
Confidence 3333344 689999998766 77778888877776 77776631 11 111111467888888888887
Q ss_pred c--cCcEEEEeecccc--cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCC
Q psy7343 270 V--QVPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQC 343 (487)
Q Consensus 270 ~--~iPV~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s 343 (487)
+ ++|+++....+.. .+...++++.+++.|+++|-.+.. +..+..+++.++++++.. ++||+..||+.+
T Consensus 110 ~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~------~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~ 183 (201)
T cd00945 110 ADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTG------FGGGGATVEDVKLMKEAVGGRVGVKAAGGIKT 183 (201)
T ss_pred hcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCC------CCCCCCCHHHHHHHHHhcccCCcEEEECCCCC
Confidence 4 8999998765432 334555666678899999987321 123446788899998887 679999999999
Q ss_pred HHHHHHHHHhcCCcEEEec
Q psy7343 344 LADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 344 ~~da~~~l~~~Gad~VmiG 362 (487)
.+.+.+.+ ..||+++++|
T Consensus 184 ~~~~~~~~-~~Ga~g~~~g 201 (201)
T cd00945 184 LEDALAAI-EAGADGIGTS 201 (201)
T ss_pred HHHHHHHH-HhccceeecC
Confidence 99999999 6799999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.7e-07 Score=86.23 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+..++++.+++.|++.+.++...+.. .....+++.++++++.+++||+++|||+|.+|+++++ ..|+++|++|+++
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~---~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~-~~G~~~vilg~~~ 106 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASK---RGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLL-SLGADKVSINTAA 106 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcc---cCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHH-HcCCCEEEEChhH
Confidence 78999999999999999997775543 2345789999999999999999999999999999988 6799999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||.++.+
T Consensus 107 l~~~~~~~~ 115 (232)
T TIGR03572 107 LENPDLIEE 115 (232)
T ss_pred hcCHHHHHH
Confidence 999987653
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-06 Score=83.25 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=83.8
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecc-----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY-----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~-----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~ 323 (487)
|+....+ +.+.++++...+. .+-+++-.+-+ .+..+..++++.+++. ++.+.+..-.+... ....+++.
T Consensus 107 gt~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~---~~g~~~~~ 180 (233)
T cd04723 107 GTETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGS---GQGPDLEL 180 (233)
T ss_pred cceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCcccc---CCCcCHHH
Confidence 3444567 8888888776431 12223322212 1334689999999999 99998855433322 23468999
Q ss_pred HHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 324 i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++++.+.+++||++.|||+|.+|+++++ ..|+++|.+|++++.+
T Consensus 181 ~~~i~~~~~ipvi~~GGi~s~edi~~l~-~~G~~~vivGsal~~g 224 (233)
T cd04723 181 LERLAARADIPVIAAGGVRSVEDLELLK-KLGASGALVASALHDG 224 (233)
T ss_pred HHHHHHhcCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEehHHHcC
Confidence 9999999999999999999999999999 6899999999998876
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.6e-07 Score=95.32 Aligned_cols=191 Identities=14% Similarity=0.111 Sum_probs=109.7
Q ss_pred CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccccc-CCCchHHHHHHHHhCCccceec---
Q psy7343 104 HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMV-DASELPWRLLSRRYGSHLCYTP--- 179 (487)
Q Consensus 104 dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma-~~td~~fr~i~~~~Ga~l~~t~--- 179 (487)
++..+||+++.++.+..+...+..... .+.|+++|+.+. ..+...+-++ .+.+.++..+..|+| ||..
T Consensus 71 g~~n~~~~s~~~~~~~~~~~~~~~~~~-~~~p~i~si~g~----~~~~~~~~~a~~~~~~g~d~ielN~s---cP~~~~~ 142 (420)
T PRK08318 71 GFNNIELITDRPLEVNLREIRRVKRDY-PDRALIASIMVE----CNEEEWKEIAPLVEETGADGIELNFG---CPHGMSE 142 (420)
T ss_pred cccCcccccccCHHHHHHHHHHHHhhC-CCceEEEEeccC----CCHHHHHHHHHHHHhcCCCEEEEeCC---CCCCccc
Confidence 566788888877743333333333322 357899996321 0221111111 011111222333445 5541
Q ss_pred cccchhhhcChhHHHHHHhc--CCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEe-ecCCC-c---------ceeec
Q psy7343 180 MVSAHQFIADKKLRQEILMS--TPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDI-NIGCP-Q---------MVAKR 245 (487)
Q Consensus 180 ~v~~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~Idi-N~GcP-~---------~i~~~ 245 (487)
.-.+..+.++++...++++. ...++||+|||+.+ ..++.++++.++++ .|+|-+ |-=.. . .-..|
T Consensus 143 ~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~-~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~ 221 (420)
T PRK08318 143 RGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPN-ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVN 221 (420)
T ss_pred cCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCC-cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceec
Confidence 11356788999998888862 33468999999853 33467778877666 676652 21100 0 00123
Q ss_pred cCccccc---cCChHHHHHHHHHHhhhc---cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 246 GHYGAYL---QDDWPLLTNLVSSLRQAV---QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 246 gr~G~~l---~~d~~~i~eiv~~v~~~~---~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
++++... ........+.+..+++.+ ++||++++ ++.+..|+.+.+. +|||+|+| ++..
T Consensus 222 ~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~G----GI~s~~da~e~i~-aGA~~Vqi-~ta~ 285 (420)
T PRK08318 222 GKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIG----GIETWRDAAEFIL-LGAGTVQV-CTAA 285 (420)
T ss_pred CCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeec----CcCCHHHHHHHHH-hCCChhee-eeee
Confidence 3332221 222333455666676665 79999998 8889999999987 99999999 7753
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-06 Score=82.44 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=82.9
Q ss_pred cccccCChHHHHHHHHHH-hhhccCcEEEEe----ec---ccc--cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSL-RQAVQVPVSCKI----RI---YQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v-~~~~~iPV~vKi----R~---~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~ 318 (487)
|+....+|+++.++.+.. .+.+ -+++-. ++ +|. ..+..++++.+++.|+..+.++.=.+... ..|
T Consensus 102 gt~a~~~p~~~~~~~~~~g~~~i--vvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt--~~G- 176 (232)
T PRK13586 102 STIVFTNFNLFHDIVREIGSNRV--LVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGT--TKG- 176 (232)
T ss_pred CchhhCCHHHHHHHHHHhCCCCE--EEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEeccccccc--CcC-
Confidence 455567999999988776 2322 122222 11 232 23678999999999999999855444332 334
Q ss_pred CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 319 ~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.+++.++++++. ..|++++|||.|.+|+.++. +.|+++|.+|++++.+
T Consensus 177 ~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~-~~G~~gvivg~Aly~g 224 (232)
T PRK13586 177 IDYNVKDYARLI-RGLKEYAGGVSSDADLEYLK-NVGFDYIIVGMAFYLG 224 (232)
T ss_pred cCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHH-HCCCCEEEEehhhhcC
Confidence 689999998876 55699999999999999998 6899999999998754
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-06 Score=82.40 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHhhh-ccCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLRQA-VQVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~~~-~~iPV~vKiR~~~ 282 (487)
.|.+.+.++++.+.+. +|.||| |.|..-..-++ .-.+| --+.+.+.++++++++. .++|+..=+ ..
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iEl--GiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~--Y~ 96 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALEL--GVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLT--YY 96 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE--CCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEE--ec
Confidence 4778888888876655 899998 55542111110 00011 13567788889999876 688876322 11
Q ss_pred cc---ccHHHHHHHHHHcCCcEEEEEcc--------------------------cc-----------C------CCCCCC
Q psy7343 283 DV---NKTVEYARMLERAGCQLLAVHGR--------------------------TV-----------D------QRGMNT 316 (487)
Q Consensus 283 d~---~~~~e~a~~le~~G~d~I~VhgR--------------------------t~-----------~------~~g~~~ 316 (487)
+. --.+++++.+.++|+|+|++|.= |. . ...+++
T Consensus 97 Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~T 176 (256)
T TIGR00262 97 NLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVT 176 (256)
T ss_pred cHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 11 12367777888888888877540 00 0 011234
Q ss_pred CC------CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 317 GL------ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 317 g~------~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
|. ...+.++++++..+.||+..|||+|++++.++. +.|||+|.+|++++
T Consensus 177 G~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~-~~GADgvVvGSaiv 231 (256)
T TIGR00262 177 GARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAI-DAGADGVIVGSAIV 231 (256)
T ss_pred CCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHH
Confidence 43 135889999998899999999999999999998 78999999999875
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=85.81 Aligned_cols=119 Identities=24% Similarity=0.292 Sum_probs=78.6
Q ss_pred hhhhcChhHHHHHHhc--CCCCCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCccee---------eccCccc
Q psy7343 184 HQFIADKKLRQEILMS--TPEDRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVA---------KRGHYGA 250 (487)
Q Consensus 184 ~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~---------~~gr~G~ 250 (487)
..+.++++...++++. ...+.||++|+.. .+.++..+.++.++++ +|+|.++.+.+.... ..+..|-
T Consensus 141 ~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 220 (289)
T cd02810 141 RQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGL 220 (289)
T ss_pred cccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCcc
Confidence 4466777777777652 2237899999994 5677888899888776 899988744321100 0011010
Q ss_pred cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 251 YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
..........+.++.+++.+ ++||++.+ ++.+..++.+.+. +|+|+|++ ||.
T Consensus 221 sg~~~~~~~~~~v~~i~~~~~~~ipiia~G----GI~~~~da~~~l~-~GAd~V~v-g~a 274 (289)
T cd02810 221 SGAPIRPLALRWVARLAARLQLDIPIIGVG----GIDSGEDVLEMLM-AGASAVQV-ATA 274 (289)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCEEEEC----CCCCHHHHHHHHH-cCccHheE-cHH
Confidence 00111123355667777777 89999998 7778888888886 89999999 774
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.9e-06 Score=87.20 Aligned_cols=104 Identities=24% Similarity=0.283 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhhhc-cCcEEE-EeecccccccHHHHHHHHHHcCCcEEEEEcccc----CCCCCCC--CCCCHHHHHHH
Q psy7343 256 WPLLTNLVSSLRQAV-QVPVSC-KIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV----DQRGMNT--GLASWEHITAV 327 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~-~iPV~v-KiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~----~~~g~~~--g~~~~~~i~~i 327 (487)
-..+.++++.+|+.. +++|++ |+ .+.+.++.+.++|+|+|-| |-+. ..+ .++ |.+++..+.++
T Consensus 252 ~~~~~~~i~~ik~~~p~~~v~agnv-------~t~~~a~~l~~aGad~v~v-gig~gsictt~-~~~~~~~p~~~av~~~ 322 (479)
T PRK07807 252 QEKMLEALRAVRALDPGVPIVAGNV-------VTAEGTRDLVEAGADIVKV-GVGPGAMCTTR-MMTGVGRPQFSAVLEC 322 (479)
T ss_pred cHHHHHHHHHHHHHCCCCeEEeecc-------CCHHHHHHHHHcCCCEEEE-CccCCcccccc-cccCCchhHHHHHHHH
Confidence 356677888888876 688888 55 5567778888899999987 4221 111 122 34678888888
Q ss_pred Hh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 328 RK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 328 ~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
.+ ..++|||+.|||.++.|+.+++ ..|||+||+|+.|....
T Consensus 323 ~~~~~~~~~~via~ggi~~~~~~~~al-~~ga~~v~~g~~~ag~~ 366 (479)
T PRK07807 323 AAAARELGAHVWADGGVRHPRDVALAL-AAGASNVMIGSWFAGTY 366 (479)
T ss_pred HHHHHhcCCcEEecCCCCCHHHHHHHH-HcCCCeeeccHhhccCc
Confidence 77 4589999999999999999999 68999999999887764
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-05 Score=77.80 Aligned_cols=108 Identities=19% Similarity=0.092 Sum_probs=75.9
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEE-eec---ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCK-IRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vK-iR~---~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i 324 (487)
|+....+|+.+.++.. .+ -+-+| +++ +|. +...++.+.+++.|+ ++.+..-.+. +.....+++.+
T Consensus 108 gT~a~~~p~~l~~~~~----vv--slD~~~g~v~~~g~~-~~~~~~~~~~~~~g~-~ii~tdI~~d---Gt~~G~d~eli 176 (221)
T TIGR00734 108 ATETLDITELLRECYT----VV--SLDFKEKFLDASGLF-ESLEEVRDFLNSFDY-GLIVLDIHSV---GTMKGPNLELL 176 (221)
T ss_pred cChhhCCHHHHHHhhh----EE--EEEeECCcccccccc-ccHHHHHHHHHhcCC-EEEEEECCcc---ccCCCCCHHHH
Confidence 4444568988877541 11 12222 221 222 367778888888998 6666322222 12334689999
Q ss_pred HHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 325 ~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+++++.+++||+++|||.|.+|+.++. +.|+|+|++|++++..
T Consensus 177 ~~i~~~~~~pvia~GGi~s~ed~~~l~-~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 177 TKTLELSEHPVMLGGGISGVEDLELLK-EMGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHhhCCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEhHHhhCC
Confidence 999999999999999999999999977 6899999999998753
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-05 Score=74.87 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TI 333 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~i 333 (487)
++.+.++++..+. .++.+.+-+ .+..+ ++.+.+.|++.+.+++|..... ..+.+.+.++++.+ ++
T Consensus 107 ~~~~~~~~~~~~~-~g~~~~v~v------~~~~e-~~~~~~~g~~~i~~t~~~~~~~-----~~~~~~~~~l~~~~~~~~ 173 (217)
T cd00331 107 DEQLKELYELARE-LGMEVLVEV------HDEEE-LERALALGAKIIGINNRDLKTF-----EVDLNTTERLAPLIPKDV 173 (217)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEE------CCHHH-HHHHHHcCCCEEEEeCCCcccc-----CcCHHHHHHHHHhCCCCC
Confidence 3666676665533 355554433 23444 5566778999999987654332 35678889998874 79
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
||++.|||.+++|+.+++ +.|+|+|++|++++..++.
T Consensus 174 pvia~gGI~s~edi~~~~-~~Ga~gvivGsai~~~~~p 210 (217)
T cd00331 174 ILVSESGISTPEDVKRLA-EAGADAVLIGESLMRAPDP 210 (217)
T ss_pred EEEEEcCCCCHHHHHHHH-HcCCCEEEECHHHcCCCCH
Confidence 999999999999999999 6899999999999877653
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=78.93 Aligned_cols=150 Identities=15% Similarity=0.192 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
.|.+.+.++++.+.+. +|.||| |.|..-..-++ .-.+| --+.+.+.++++++++..++|+++=+ ..+
T Consensus 26 P~~~~~~~~~~~l~~~Gad~iEl--GiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~--Y~N 101 (263)
T CHL00200 26 PDIVITKKALKILDKKGADIIEL--GIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFT--YYN 101 (263)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEe--ccc
Confidence 4778888888866655 899998 55542111110 01111 12467788888889877888976432 112
Q ss_pred c---ccHHHHHHHHHHcCCcEEEEEcc--------------------------cc-----------C------CCCCCCC
Q psy7343 284 V---NKTVEYARMLERAGCQLLAVHGR--------------------------TV-----------D------QRGMNTG 317 (487)
Q Consensus 284 ~---~~~~e~a~~le~~G~d~I~VhgR--------------------------t~-----------~------~~g~~~g 317 (487)
. --.+++.+.+.++|+|+|.||.= |. . ...+.+|
T Consensus 102 ~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG 181 (263)
T CHL00200 102 PVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTG 181 (263)
T ss_pred HHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCC
Confidence 1 13567788888888888887440 00 0 1122334
Q ss_pred CC------CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 318 LA------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 318 ~~------~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.. .-+.++++++.++.||...+||++++++.++. ..|||||.+|.+++.
T Consensus 182 ~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~-~~GADGvVVGSalv~ 236 (263)
T CHL00200 182 LKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIK-GWNINGIVIGSACVQ 236 (263)
T ss_pred CCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence 31 12678888998999999999999999999988 789999999999864
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.7e-06 Score=82.63 Aligned_cols=85 Identities=31% Similarity=0.411 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|++.+.|..-..... ....+++.++++++.+++||++.|||++.+|+++++ +.|||+|++|++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~---g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~-~~Ga~~vilg~~ 105 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKA---GKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALL-DAGVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc---CCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHH-HcCCCEEEECch
Confidence 3789999999999999999966422111 224688999999999999999999999999999999 689999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
++.+|.++.
T Consensus 106 ~l~~~~~l~ 114 (233)
T PRK00748 106 AVKNPELVK 114 (233)
T ss_pred HHhCHHHHH
Confidence 999997765
|
|
| >KOG2334|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.8e-07 Score=93.97 Aligned_cols=234 Identities=20% Similarity=0.277 Sum_probs=149.1
Q ss_pred HhhhCCCC-CceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHh--
Q psy7343 126 ILMSTPED-RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILM-- 198 (487)
Q Consensus 126 ~~~~~~~e-~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~-- 198 (487)
.|.+++.+ ..++.|+... ++.+.+ ..|...+-....++.|+| ||-++-. |.+|+.+++++..++.
T Consensus 73 vfr~~~~e~~rlilQ~gT~----sa~lA~-e~A~lv~nDvsgidiN~g---CpK~fSi~~gmgaalLt~~dkl~~IL~sL 144 (477)
T KOG2334|consen 73 VFRTCPAENSRLILQIGTA----SAELAL-EAAKLVDNDVSGIDINMG---CPKEFSIHGGMGAALLTDPDKLVAILYSL 144 (477)
T ss_pred EEEechhhcCeEEEEecCC----cHHHHH-HHHHHhhcccccccccCC---CCCccccccCCCchhhcCHHHHHHHHHHH
Confidence 44455444 4688997322 222222 222222222335688999 7766543 7889999999988886
Q ss_pred cCCCCCCeeeeec-cCCHHHHHHHHHhhCCc-CcEEEeecC---------------------CC-cceeeccCc------
Q psy7343 199 STPEDRPLIIQFC-GNDSKNLTEAAKLAEPH-CDGIDINIG---------------------CP-QMVAKRGHY------ 248 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~-~d~IdiN~G---------------------cP-~~i~~~gr~------ 248 (487)
.....+|+++||| -.+.++..+..+++... ...|.+|+. || ..+..+|..
T Consensus 145 vk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y 224 (477)
T KOG2334|consen 145 VKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQY 224 (477)
T ss_pred HhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhh
Confidence 3455789999998 45677777777777665 666766653 22 111111100
Q ss_pred --------------------------------------------------------------------------------
Q psy7343 249 -------------------------------------------------------------------------------- 248 (487)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (487)
T Consensus 225 ~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~eG~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~~~~p~~~~~~~ 304 (477)
T KOG2334|consen 225 SDIEDFQEKTGADSVMIARAAESNPSIFREEGCLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQEGCPRGKRIQA 304 (477)
T ss_pred hhHHHHHHHhccchhhhhHhhhcCCceeeecCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhhccCchhhHhhc
Confidence
Q ss_pred --cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHH
Q psy7343 249 --GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326 (487)
Q Consensus 249 --G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~ 326 (487)
+......+..+.++.+..++..+.|+ .|.|+..+..+...+++.+++.+ ...+|+|..-.+ -..++.|+.++.
T Consensus 305 ~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f~r--~~~pa~~~~~k~ 379 (477)
T KOG2334|consen 305 AQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIFDR--PTDPAKWDTPKM 379 (477)
T ss_pred chhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhcccccc--cCCCcCCCCHHH
Confidence 00000011112222223333344566 67888777778889999999988 556677764333 345678888888
Q ss_pred HHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC
Q psy7343 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 327 i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
+...+.++++++|.+....+. . ..++..+|..++...+-.+|....
T Consensus 380 ~l~~~~~~~~~~~~~ye~~~~---~-d~lf~si~~~~~~~~~ssi~~~n~ 425 (477)
T KOG2334|consen 380 VLADLCVKTKANGPVYETVQR---T-DKLFSSIATARGQKYNSSIWSPNK 425 (477)
T ss_pred HHHHhhhhhcCCCcchhhhhh---h-hhhhHHHhhhhhhhhhccccCcch
Confidence 888889999999999887775 2 567889999999999999987543
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-05 Score=77.48 Aligned_cols=150 Identities=16% Similarity=0.178 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
.|.+.+.++++.+.+. +|.||| |-|..-..-++ .-.+| --+.+.+.++++.+++..++|+++=+ ..+
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iEl--GiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~--Y~N 88 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIEL--GVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFT--YYN 88 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEe--ccc
Confidence 4778888988866555 899998 55542111110 00111 13567788888888877788976532 111
Q ss_pred c---ccHHHHHHHHHHcCCcEEEEEc--------------------------cccC-----------------CCCCCCC
Q psy7343 284 V---NKTVEYARMLERAGCQLLAVHG--------------------------RTVD-----------------QRGMNTG 317 (487)
Q Consensus 284 ~---~~~~e~a~~le~~G~d~I~Vhg--------------------------Rt~~-----------------~~g~~~g 317 (487)
. -...++.+.+.++|+|++.|-. -|.. ...+.+|
T Consensus 89 ~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG 168 (250)
T PLN02591 89 PILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTG 168 (250)
T ss_pred HHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcC
Confidence 1 1345667777777777776611 1100 0011222
Q ss_pred C-----CC-HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 318 L-----AS-WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 318 ~-----~~-~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
. .. -+.++++|+..++||+..-||+|++++.+++ ..|||||.+|++++.
T Consensus 169 ~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~-~~GADGvIVGSalVk 223 (250)
T PLN02591 169 ARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIA-GWGADGVIVGSAMVK 223 (250)
T ss_pred CCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence 1 12 2568889998999999999999999999988 789999999999873
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00012 Score=71.17 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=102.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
++++++|||+|+||..|+..+.++|+ +++.++|++.+.+...-+.....+ +.|+.+++... +. .
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~-----~~~~~v~~i~~----~~-~----- 66 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALT-----DKPFGVNLLVP----SS-N----- 66 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhc-----CCCeEEeEecC----CC-C-----
Confidence 46899999999999999999999987 888888888776644322222211 45666675211 11 0
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeec
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINI 236 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~ 236 (487)
.....+-..+.+.|++..-.+.. ...+... .+.. .+.++++.+. +.+.... ..+...|.|-+..
T Consensus 67 --~~~~~~~~~~~~~g~d~v~l~~~------~~~~~~~-~~~~--~~i~~i~~v~--~~~~~~~---~~~~gad~i~~~~ 130 (236)
T cd04730 67 --PDFEALLEVALEEGVPVVSFSFG------PPAEVVE-RLKA--AGIKVIPTVT--SVEEARK---AEAAGADALVAQG 130 (236)
T ss_pred --cCHHHHHHHHHhCCCCEEEEcCC------CCHHHHH-HHHH--cCCEEEEeCC--CHHHHHH---HHHcCCCEEEEeC
Confidence 01123445667778765432211 1122222 2221 2456666542 2222222 2223356665432
Q ss_pred CCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 237 GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 237 GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.. ..|. +. ..++. ..+.++.+++.+++||++.+ ++.+..++.+.+ +.|+|+|++ |+.
T Consensus 131 ~~-----~~G~-~~--~~~~~-~~~~i~~i~~~~~~Pvi~~G----GI~~~~~v~~~l-~~GadgV~v-gS~ 187 (236)
T cd04730 131 AE-----AGGH-RG--TFDIG-TFALVPEVRDAVDIPVIAAG----GIADGRGIAAAL-ALGADGVQM-GTR 187 (236)
T ss_pred cC-----CCCC-CC--ccccC-HHHHHHHHHHHhCCCEEEEC----CCCCHHHHHHHH-HcCCcEEEE-chh
Confidence 11 0111 11 11111 23455566667789999987 565666666666 489999999 653
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-05 Score=84.95 Aligned_cols=127 Identities=21% Similarity=0.204 Sum_probs=84.3
Q ss_pred HHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcC
Q psy7343 219 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG 298 (487)
Q Consensus 219 ~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G 298 (487)
..+..+++...|.|+|. . .|+ ..+...+.++.+++..+.++.++. +++.+ .+-++.+.++|
T Consensus 245 ~ra~~Lv~aGvd~i~vd--~-----a~g--------~~~~~~~~i~~ir~~~~~~~~V~a---GnV~t-~e~a~~li~aG 305 (502)
T PRK07107 245 ERVPALVEAGADVLCID--S-----SEG--------YSEWQKRTLDWIREKYGDSVKVGA---GNVVD-REGFRYLAEAG 305 (502)
T ss_pred HHHHHHHHhCCCeEeec--C-----ccc--------ccHHHHHHHHHHHHhCCCCceEEe---ccccC-HHHHHHHHHcC
Confidence 34444455457777764 1 122 233445777788887754455443 24444 44566677899
Q ss_pred CcEEEEEccc-------cCCCCCCCCCCCHHHHHHHHhhC-------C--CcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 299 CQLLAVHGRT-------VDQRGMNTGLASWEHITAVRKAL-------T--IPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 299 ~d~I~VhgRt-------~~~~g~~~g~~~~~~i~~i~~~~-------~--iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+|+|.| |.. +.+. -.|.+.+..+.++.++. + +|||+.|||++.-|+.+.+ ..|||+||+|
T Consensus 306 Ad~I~v-g~g~Gs~c~tr~~~--~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAl-a~GA~~vm~G 381 (502)
T PRK07107 306 ADFVKV-GIGGGSICITREQK--GIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLAL-AMGADFIMLG 381 (502)
T ss_pred CCEEEE-CCCCCcCccccccc--CCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHH-HcCCCeeeeC
Confidence 999998 432 2233 23455666666666543 3 8999999999999999999 7999999999
Q ss_pred cccccC
Q psy7343 363 EGNLYN 368 (487)
Q Consensus 363 Ra~l~~ 368 (487)
|.+-+.
T Consensus 382 ~~~ag~ 387 (502)
T PRK07107 382 RYFARF 387 (502)
T ss_pred hhhhcc
Confidence 977664
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.8e-06 Score=81.10 Aligned_cols=84 Identities=23% Similarity=0.234 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.+.++.+++.|++.+.+-.-.... ....+.+.++++.+.+++||.+.|||+|.+|+++++ ..||+.|.+|+++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~----g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l-~~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF----GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAAL-ATGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC----CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHH-HCCCCEEEECchH
Confidence 78899999999999999884432221 234678999999999999999999999999999999 7899999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||.++.+
T Consensus 108 l~~p~l~~~ 116 (241)
T PRK14024 108 LENPEWCAR 116 (241)
T ss_pred hCCHHHHHH
Confidence 999999864
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.9e-05 Score=75.01 Aligned_cols=126 Identities=25% Similarity=0.362 Sum_probs=90.5
Q ss_pred HHHHHhhCCcCcEEE--eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---cccccHHHHHHH
Q psy7343 219 TEAAKLAEPHCDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDVNKTVEYARM 293 (487)
Q Consensus 219 ~~aa~~~~~~~d~Id--iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~d~~~~~e~a~~ 293 (487)
.++...+++..+.|| +|.|.+. ..+++.+.+-++++++.. .|+.+|+-+. -+.++..++++.
T Consensus 78 ~e~~~Ai~~GA~EiD~Vin~~~~~------------~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~ 144 (221)
T PRK00507 78 FEAKDAIANGADEIDMVINIGALK------------SGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEI 144 (221)
T ss_pred HHHHHHHHcCCceEeeeccHHHhc------------CCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHH
Confidence 445555666678777 3544432 236888888888888765 3667776442 234467888888
Q ss_pred HHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 294 LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 294 le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+.++|+|+|-- +-+. ..+.+..+.++.+++.+ +++|.++|||+|.+|+.+++ +.||+.+...++
T Consensus 145 ~~~agadfIKT-sTG~-----~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i-~aGA~riGtS~~ 210 (221)
T PRK00507 145 AKEAGADFVKT-STGF-----STGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMI-EAGATRLGTSAG 210 (221)
T ss_pred HHHhCCCEEEc-CCCC-----CCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHH-HcCcceEccCcH
Confidence 99999997765 2211 23447788888888887 58999999999999999999 789998877654
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.4e-06 Score=81.06 Aligned_cols=85 Identities=25% Similarity=0.348 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+..++++.+.+.|++.+.+ |..... ......+++.++++.+..++|++.+|||+|.+|++.++ ..|||+|++|+..
T Consensus 33 ~~~e~a~~~~~~G~~~l~i--~dl~~~-~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~-~~Ga~~v~iGs~~ 108 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHL--VDLDGA-FEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLL-DLGVDRVILGTAA 108 (241)
T ss_pred CHHHHHHHHHHcCCCEEEE--Eechhh-hcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHH-HcCCCEEEEChHH
Confidence 6889999999999999866 433321 01224578999999999999999999999999999999 6999999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.+|+++.+
T Consensus 109 ~~~~~~~~~ 117 (241)
T PRK13585 109 VENPEIVRE 117 (241)
T ss_pred hhChHHHHH
Confidence 999988753
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=83.38 Aligned_cols=102 Identities=25% Similarity=0.326 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC-------CCCCCCCCCCHHHHHHHH
Q psy7343 257 PLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD-------QRGMNTGLASWEHITAVR 328 (487)
Q Consensus 257 ~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~-------~~g~~~g~~~~~~i~~i~ 328 (487)
..+.+.++.+++.. ++||+++ ++.+ .+-++.+.++|+|+|.+ |-+.. .. --|.+.++.+.+++
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g-----~v~t-~e~a~~l~~aGad~i~v-g~g~gs~~~~r~~~--~~g~p~~~~~~~~~ 324 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAG-----NVAT-AEAARALIEAGADAVKV-GIGPGSICTTRIVA--GVGVPQITAIADAA 324 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEe-----ccCC-HHHHHHHHHcCCCEEEE-CCCCCccccceeec--CCCcCHHHHHHHHH
Confidence 44556677788776 8898885 4444 45566777899999987 42221 11 12456777887776
Q ss_pred hh---CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 329 KA---LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 329 ~~---~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+. .++|||+.|||+++.|+.+++ ..|||.||+|+.+-.-
T Consensus 325 ~~~~~~~~~viadGGi~~~~di~kAl-a~GA~~v~~G~~~a~~ 366 (486)
T PRK05567 325 EAAKKYGIPVIADGGIRYSGDIAKAL-AAGASAVMLGSMLAGT 366 (486)
T ss_pred HHhccCCCeEEEcCCCCCHHHHHHHH-HhCCCEEEECcccccc
Confidence 64 479999999999999999999 7899999999876554
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.3e-05 Score=83.93 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC--CCCCCC--CCCCHHHHHHHH-
Q psy7343 255 DWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD--QRGMNT--GLASWEHITAVR- 328 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~--~~g~~~--g~~~~~~i~~i~- 328 (487)
+++.+.++++.+++.. ++||++- +. .+.+.++.+.++|+|+|-|-+.... ....++ |.+....+.++.
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~g-----~~-~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~ 322 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVAG-----NV-VSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAA 322 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEe-----cc-CCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHH
Confidence 4578888999999875 7899883 23 4456677888999999987322110 000122 223333333332
Q ss_pred --hhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 329 --KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 329 --~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+..++|||+.|||+++.|+.+.+ ..|||+||+|+.+-+.
T Consensus 323 ~~~~~~~~viadGgi~~~~di~kal-a~GA~~vm~g~~~ag~ 363 (475)
T TIGR01303 323 EARKLGGHVWADGGVRHPRDVALAL-AAGASNVMVGSWFAGT 363 (475)
T ss_pred HHHHcCCcEEEeCCCCCHHHHHHHH-HcCCCEEeechhhccc
Confidence 22389999999999999999999 7999999999866544
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.2e-05 Score=72.44 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=95.7
Q ss_pred eeecc-CCHHHHHHHHHhhCCcCcEEEeecCCCc--ceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccc
Q psy7343 208 IQFCG-NDSKNLTEAAKLAEPHCDGIDINIGCPQ--MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV 284 (487)
Q Consensus 208 Vqi~g-~d~~~~~~aa~~~~~~~d~IdiN~GcP~--~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~ 284 (487)
.+..| .+.++.+..|+++.+.+.....- +.. ++-+.+. -..|+.|+-...+..+.+.+. ++-|.--+
T Consensus 75 PNTaGc~tA~EAv~~A~laRe~~~~~~~~--~~~wIKLEVi~D-~~~LlPD~~etl~Aae~Lv~e-GF~VlPY~------ 144 (267)
T CHL00162 75 PNTAGCQTAEEAIRMAFLGRELAKQLGQE--DNNFVKLEVISD-PKYLLPDPIGTLKAAEFLVKK-GFTVLPYI------ 144 (267)
T ss_pred CcCcCCCCHHHHHHHHHHHHHHhcccccc--CCCeEEEEEeCC-CcccCCChHHHHHHHHHHHHC-CCEEeecC------
Confidence 34443 56777777777766652100000 111 3334432 234556665555544444332 44443322
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+-.-+++.|++.||..||--|- .- |.-.|..+...++.+++..++||+..+||.+++|+.+.+ +.|||+|.+.+|
T Consensus 145 ~~D~v~a~rLed~Gc~aVMPlgs-PI--GSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~Am-ElGaDgVL~nSa 220 (267)
T CHL00162 145 NADPMLAKHLEDIGCATVMPLGS-PI--GSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAM-ELGASGVLLNTA 220 (267)
T ss_pred CCCHHHHHHHHHcCCeEEeeccC-cc--cCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHH-HcCCCEEeecce
Confidence 23456789999999999998432 11 113456678899999999999999999999999999999 799999999999
Q ss_pred cccC
Q psy7343 365 NLYN 368 (487)
Q Consensus 365 ~l~~ 368 (487)
+..-
T Consensus 221 IakA 224 (267)
T CHL00162 221 VAQA 224 (267)
T ss_pred eecC
Confidence 8743
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=9e-06 Score=80.55 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.++++.+++.|++.+.+..=.+.. .....+.+.++++.+.+++||++.|||++.+|+++++ ..|+++|.+|+++
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~---~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~-~~G~~~vvigs~~ 106 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASK---RGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIF-SLGVEKVSINTAA 106 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCc---CCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHH-HCCCCEEEEChHH
Confidence 78999999999999999984322221 1234689999999999999999999999999999999 6799999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.+|.++.+
T Consensus 107 ~~~~~~~~~ 115 (258)
T PRK01033 107 LEDPDLITE 115 (258)
T ss_pred hcCHHHHHH
Confidence 999988754
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=82.33 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=70.7
Q ss_pred cCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC------CCCCCCCHHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG------MNTGLASWEHIT 325 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g------~~~g~~~~~~i~ 325 (487)
..+++.+.++++.+|+.. +.||.+|+-.+.. ..+++..+.++|+|.|+|.|....... ...|.+....+.
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~---~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~ 260 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRG---VEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALA 260 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT---HHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCc---HHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHH
Confidence 346788899999999988 8999999955432 333444488899999999776322110 011222223344
Q ss_pred HHHhhC-------CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 326 AVRKAL-------TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 326 ~i~~~~-------~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++.+.+ ++.++++||+.|+.|+.+.+ ..|||+|.+||++|--
T Consensus 261 ~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kal-aLGAD~v~igt~~liA 309 (368)
T PF01645_consen 261 RAHQALVKNGLRDRVSLIASGGLRTGDDVAKAL-ALGADAVYIGTAALIA 309 (368)
T ss_dssp HHHHHHHCTT-CCCSEEEEESS--SHHHHHHHH-HCT-SEEE-SHHHHHH
T ss_pred HHHHHHHHcCCCCceEEEEeCCccCHHHHHHHH-hcCCCeeEecchhhhh
Confidence 443321 58999999999999999999 7999999999987743
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.3e-05 Score=74.97 Aligned_cols=150 Identities=18% Similarity=0.163 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceee-ccCcc-----ccc--cCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAK-RGHYG-----AYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~-~gr~G-----~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
.+.+.+.+.++.++++ +|.|||+. |..-.. .|.+- .+| -.+.+...++++.+++..++|+.+=+-.+ .
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n-~ 87 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN-P 87 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC-H
Confidence 3667889989888886 89999985 432111 11100 011 12345778888889887788976622111 1
Q ss_pred ccc--HHHHHHHHHHcCCcEEEEEc--------------------------ccc--------C-C---------CCCCCC
Q psy7343 284 VNK--TVEYARMLERAGCQLLAVHG--------------------------RTV--------D-Q---------RGMNTG 317 (487)
Q Consensus 284 ~~~--~~e~a~~le~~G~d~I~Vhg--------------------------Rt~--------~-~---------~g~~~g 317 (487)
... ..++++.+.++|+|+++++. -|. . . .|...+
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~ 167 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGA 167 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCC
Confidence 111 36777888888888888721 000 0 0 111111
Q ss_pred C-----CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 318 L-----ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 318 ~-----~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
. ...+.++++++..++||+..|||++.+++.++. +. ||++.+|++++.
T Consensus 168 ~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~-~~-ADgvVvGSaiv~ 220 (242)
T cd04724 168 RTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVA-KY-ADGVIVGSALVK 220 (242)
T ss_pred ccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHH-cc-CCEEEECHHHHH
Confidence 1 123778889988899999999999999999998 56 999999988653
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.6e-06 Score=79.50 Aligned_cols=85 Identities=8% Similarity=0.138 Sum_probs=71.9
Q ss_pred cHHHHHHHHHH-cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLER-AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~-~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
++.+.++.+++ .|+|.+.|---.... .....+.+.++++.+.+++||.+.|||+|.+|+++++ ..||+.|.+|+.
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~---~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l-~~Ga~kvvigt~ 107 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAK---AQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYF-AAGINYCIVGTK 107 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccc---cCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHH-HCCCCEEEECch
Confidence 67789999998 799999984332221 1234678999999999999999999999999999999 789999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
.+.||.++++
T Consensus 108 a~~~~~~l~~ 117 (234)
T PRK13587 108 GIQDTDWLKE 117 (234)
T ss_pred HhcCHHHHHH
Confidence 9999998764
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.1e-05 Score=75.08 Aligned_cols=148 Identities=20% Similarity=0.183 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHh-hhccCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLR-QAVQVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~-~~~~iPV~vKiR~~~ 282 (487)
.|.+.+.++++.+.+. +|.||| |-|..-..-++ .-.+| --+.+.+.++++.++ +..++|+++=+ ..
T Consensus 23 P~~~~~~~~~~~l~~~Gad~iEl--GiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~--Y~ 98 (258)
T PRK13111 23 PDLETSLEIIKALVEAGADIIEL--GIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMT--YY 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe--cc
Confidence 4778888888866554 899998 55542111110 01111 124667778888888 55688976532 11
Q ss_pred cc---ccHHHHHHHHHHcCCcEEEEEc--------------------------cccC-----------------CCCCCC
Q psy7343 283 DV---NKTVEYARMLERAGCQLLAVHG--------------------------RTVD-----------------QRGMNT 316 (487)
Q Consensus 283 d~---~~~~e~a~~le~~G~d~I~Vhg--------------------------Rt~~-----------------~~g~~~ 316 (487)
+. -..+++.+.+.++|+|++.|-. .+.. ..-+.+
T Consensus 99 N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvT 178 (258)
T PRK13111 99 NPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVT 178 (258)
T ss_pred cHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 11 1345666777777777776611 1100 000122
Q ss_pred CC-----CC-HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 317 GL-----AS-WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 317 g~-----~~-~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
|. .. .+.++++++..++||+..+||++++++.+++ . +||||.+|++++
T Consensus 179 G~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~-~-~ADGviVGSaiv 232 (258)
T PRK13111 179 GARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIA-A-VADGVIVGSALV 232 (258)
T ss_pred CcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHH-H-hCCEEEEcHHHH
Confidence 22 12 3689999998999999999999999999998 3 499999999876
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1e-05 Score=78.59 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
++.++++.+++. ++.+.+-.+... ..| ..+.+.++++.+.+++||++.|||+|.+|+++++ +.|+++|.+|++
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga----~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~-~~G~~~vivGta 104 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA----FEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAY-EIGVENVIIGTK 104 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch----hcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHH-HCCCCEEEECch
Confidence 788999999998 999988454322 223 3688999999999999999999999999999999 689999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++ ||.++++
T Consensus 105 a~-~~~~l~~ 113 (228)
T PRK04128 105 AF-DLEFLEK 113 (228)
T ss_pred hc-CHHHHHH
Confidence 99 9988764
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.3e-05 Score=72.08 Aligned_cols=145 Identities=18% Similarity=0.182 Sum_probs=88.3
Q ss_pred CCCeeeeecc-CCHHHHHHHHHhhCCcC--cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFCG-NDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g-~d~~~~~~aa~~~~~~~--d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
+..+-.+..| .+.++.+..|+++.+.+ +.| ++-+++. .-.|+.|+-...+-.+.+.+. ++-|.--+
T Consensus 62 ~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wI--------KLEVi~D-~~~L~PD~~etl~Aae~Lv~e-GF~VlPY~- 130 (247)
T PF05690_consen 62 GYTLLPNTAGCRTAEEAVRTARLAREAFGTNWI--------KLEVIGD-DKTLLPDPIETLKAAEILVKE-GFVVLPYC- 130 (247)
T ss_dssp TSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEE--------EE--BS--TTT--B-HHHHHHHHHHHHHT-T-EEEEEE-
T ss_pred CCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeE--------EEEEeCC-CCCcCCChhHHHHHHHHHHHC-CCEEeecC-
Confidence 3445556554 57888888888887762 222 2333332 234455655544444444332 44444332
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
.+-.-+++.|++.||..||--|- .-. .-.|..+...++.+++..++|||..+||.++.|+.+.+ +.|||+|
T Consensus 131 -----~~D~v~akrL~d~GcaavMPlgs-PIG--Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AM-ElG~daV 201 (247)
T PF05690_consen 131 -----TDDPVLAKRLEDAGCAAVMPLGS-PIG--SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-ELGADAV 201 (247)
T ss_dssp ------S-HHHHHHHHHTT-SEBEEBSS-STT--T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHH-HTT-SEE
T ss_pred -----CCCHHHHHHHHHCCCCEEEeccc-ccc--cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH-HcCCcee
Confidence 23456789999999999998432 211 23456678899999999999999999999999999999 7999999
Q ss_pred Eecccccc
Q psy7343 360 MTAEGNLY 367 (487)
Q Consensus 360 miGRa~l~ 367 (487)
.+.+++..
T Consensus 202 LvNTAiA~ 209 (247)
T PF05690_consen 202 LVNTAIAK 209 (247)
T ss_dssp EESHHHHT
T ss_pred ehhhHHhc
Confidence 99988643
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-06 Score=85.51 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=84.3
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT- 332 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~- 332 (487)
.+|-...+.+..+++.+..|++.|+ +.+.+|+ ...-++|+++|.++.....+. -.|.+..+.+.++++.++
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~kG-----V~~~~D~-~~a~~tg~~~I~vsnhggrql--D~g~st~~~L~ei~~av~~ 272 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLKG-----ILAPEDA-AGAGGTGADGIEVSNHGGRQL--DWGISTADSLPEIVEAVGD 272 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHhC-----CCCHHHH-HhhccCCceEEEEEcCCCccc--cCCCChHHHHHHHHHHhCC
Confidence 4667777777788888888999885 4444554 455679999999955444443 346677899999999985
Q ss_pred -CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 333 -IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 333 -iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++|++.|||++..|+.+++ ..|||+|++||+++..
T Consensus 273 ~~~vi~dGGiR~G~Dv~KAl-ALGA~~v~igrp~L~~ 308 (360)
T COG1304 273 RIEVIADGGIRSGLDVAKAL-ALGADAVGIGRPFLYG 308 (360)
T ss_pred CeEEEecCCCCCHHHHHHHH-HhCCchhhhhHHHHHH
Confidence 9999999999999999999 7999999999977654
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00043 Score=65.99 Aligned_cols=186 Identities=16% Similarity=0.183 Sum_probs=102.8
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN 235 (487)
.|+++..--..+.+.|++..---+...+.=.-+.+...++.+..+.. .-.|-++ ..+.++..+++..+ ..|+|.||
T Consensus 4 CGi~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~-~~~V~v~vn~~~~~i~~ia~~~--~~d~Vqlh 80 (203)
T cd00405 4 CGITTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPF-VKRVGVFVNEDLEEILEIAEEL--GLDVVQLH 80 (203)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCC-CcEEEEEeCCCHHHHHHHHHhc--CCCEEEEC
Confidence 35555554456677887653211111111111233344444433321 1223333 33455555554432 14555554
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~ 315 (487)
+. .+++. ++.+++..+.+++-.+.+. .....+. ......|+|++.+...+....|+.
T Consensus 81 ----------g~------e~~~~----~~~l~~~~~~~~i~~i~~~--~~~~~~~-~~~~~~~aD~il~dt~~~~~~Gg~ 137 (203)
T cd00405 81 ----------GD------ESPEY----CAQLRARLGLPVIKAIRVK--DEEDLEK-AAAYAGEVDAILLDSKSGGGGGGT 137 (203)
T ss_pred ----------CC------CCHHH----HHHHHhhcCCcEEEEEecC--ChhhHHH-hhhccccCCEEEEcCCCCCCCCCC
Confidence 21 12233 3345555566776444332 1112222 233357899999865554433333
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 316 ~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
....+|+.+++++ .++|+++.||| |++.+.++++...+++|.+++++...|-.
T Consensus 138 g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 138 GKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred cceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 3356899988876 68999999999 89999999954339999999999888765
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.04 E-value=4e-05 Score=75.11 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHH-hhhccCcEEEE----e--ec---cccc---ccHH-HHHHHHHHcCCcEEEEEccccCCCCCCCCCCC
Q psy7343 255 DWPLLTNLVSSL-RQAVQVPVSCK----I--RI---YQDV---NKTV-EYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320 (487)
Q Consensus 255 d~~~i~eiv~~v-~~~~~iPV~vK----i--R~---~~d~---~~~~-e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~ 320 (487)
+++.+.++.+.. .+.+-+-+-+| + ++ ||.. .+.. ++++.+++. +..|.++.-.+.. ....+|
T Consensus 114 ~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDG---tl~G~d 189 (253)
T TIGR02129 114 DLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEG---LCKGID 189 (253)
T ss_pred CHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccC---ccccCC
Confidence 378888888776 34332222222 1 11 2322 2566 889999988 9999995443333 334478
Q ss_pred HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh-cCCcEEEecccccc
Q psy7343 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQ-TGVAGVMTAEGNLY 367 (487)
Q Consensus 321 ~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~-~Gad~VmiGRa~l~ 367 (487)
++.++++.+.+++|||++|||.|.+|+.++.+. .|..++.+|++++.
T Consensus 190 lel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 190 EELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 999999999999999999999999999988432 36777999998653
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.2e-05 Score=72.94 Aligned_cols=134 Identities=22% Similarity=0.377 Sum_probs=96.9
Q ss_pred cCCHHH--HHHHHHhhCCcCcEEEe--ecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---ccc
Q psy7343 212 GNDSKN--LTEAAKLAEPHCDGIDI--NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDV 284 (487)
Q Consensus 212 g~d~~~--~~~aa~~~~~~~d~Idi--N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~d~ 284 (487)
|.++.. ..++...+++..|.||+ |.|. .+ -.||+.+.+-+++++++++-++.+|+-+. .+.
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVinig~-----~k-------~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ 139 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVINIGA-----LK-------SGNWEAVEREIRAVVEACADAVVLKVILETGLLTD 139 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeeeeHHH-----Hh-------cCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCH
Confidence 444433 45555566777888884 5444 12 23899999999999998865567776552 233
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++...+++...++|+|+|--+ .|+..+.+..+.++-+++.+ ++-|=++|||+|.+|+..++ +.|+..+...
T Consensus 140 ee~~~A~~i~~~aGAdFVKTS------TGf~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i-~aga~RiGtS 212 (228)
T COG0274 140 EEKRKACEIAIEAGADFVKTS------TGFSAGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMI-EAGATRIGTS 212 (228)
T ss_pred HHHHHHHHHHHHhCCCEEEcC------CCCCCCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHH-HHhHHHhccc
Confidence 455788888999999999542 23356678888888888887 48888999999999999999 6787766655
Q ss_pred cc
Q psy7343 363 EG 364 (487)
Q Consensus 363 Ra 364 (487)
++
T Consensus 213 s~ 214 (228)
T COG0274 213 SG 214 (228)
T ss_pred cH
Confidence 44
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.3e-05 Score=79.52 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=78.5
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccc
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 252 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l 252 (487)
.|.+......++++ ....+.||.+++. |.+.++..++++.+++. .|.|+++.|........+......
T Consensus 194 slenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~ 273 (338)
T cd04733 194 SLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKEST 273 (338)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCc
Confidence 34444555555553 3445679999984 56888888999999887 899999988632111100000000
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
........+..+.+++.+++||++.+ ++.+..++.+.+++.++|.|++ ||.
T Consensus 274 ~~~~~~~~~~~~~ik~~v~iPVi~~G----~i~t~~~a~~~l~~g~aD~V~l-gR~ 324 (338)
T cd04733 274 IAREAYFLEFAEKIRKVTKTPLMVTG----GFRTRAAMEQALASGAVDGIGL-ARP 324 (338)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEeC----CCCCHHHHHHHHHcCCCCeeee-ChH
Confidence 01112234566668888899999997 5567788888888888999999 884
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00021 Score=70.94 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=93.8
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.||..|=+-.++.+..+ ..+..+|+|-+... .+ +.+.+.++++..++ .+..+.+-+
T Consensus 110 v~iPvl~kdfi~~~~qi~~---a~~~GAD~VlLi~~-------------~l--~~~~l~~li~~a~~-lGl~~lvev--- 167 (260)
T PRK00278 110 VSLPVLRKDFIIDPYQIYE---ARAAGADAILLIVA-------------AL--DDEQLKELLDYAHS-LGLDVLVEV--- 167 (260)
T ss_pred cCCCEEeeeecCCHHHHHH---HHHcCCCEEEEEec-------------cC--CHHHHHHHHHHHHH-cCCeEEEEe---
Confidence 4689998766555543222 22222444433211 11 34677888887765 476666644
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
.+..++ +.+.+.|+|.|.+|+|.... -..+.+.+.++.+.+ .+++|+-|||.|++|+.+++ ..|+|+|
T Consensus 168 ---h~~~E~-~~A~~~gadiIgin~rdl~~-----~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~-~~Gad~v 237 (260)
T PRK00278 168 ---HDEEEL-ERALKLGAPLIGINNRNLKT-----FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLA-KAGADAV 237 (260)
T ss_pred ---CCHHHH-HHHHHcCCCEEEECCCCccc-----ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHH-HcCCCEE
Confidence 344444 45667899999998875432 234677788887766 36999999999999999999 6899999
Q ss_pred EeccccccCccc
Q psy7343 360 MTAEGNLYNPAL 371 (487)
Q Consensus 360 miGRa~l~~P~l 371 (487)
.+|++++..++.
T Consensus 238 lVGsaI~~~~dp 249 (260)
T PRK00278 238 LVGESLMRADDP 249 (260)
T ss_pred EECHHHcCCCCH
Confidence 999999987664
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.1e-05 Score=76.31 Aligned_cols=85 Identities=27% Similarity=0.376 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.++++.+++.|++.+.|........ ....+.+.++++++.+++|+...|||++.+|+++++ +.|||.|++|..+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~---g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~-~~Ga~~vvlgs~~ 104 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKE---GGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLL-DLGVDRVIIGTAA 104 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc---CCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHH-HcCCCEEEEChHH
Confidence 789999999999999999954322211 233578999999999999999999999999999999 6899999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||.++.+
T Consensus 105 l~d~~~~~~ 113 (230)
T TIGR00007 105 VENPDLVKE 113 (230)
T ss_pred hhCHHHHHH
Confidence 999987653
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=76.93 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=70.6
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.+.++.+++.|++.+.|--=.... .....+++.++++.+.+ +|+...|||+|.+|+++++ ..||+.|.+|+.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~---~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l-~~Ga~rvvigT~ 104 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAI---ENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLR-KLGYRRQIVSSK 104 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcc---cCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHH-HCCCCEEEECch
Confidence 478999999999999999883322111 12345789999999887 7999999999999999999 789999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||.++++
T Consensus 105 a~~~p~~l~~ 114 (241)
T PRK14114 105 VLEDPSFLKF 114 (241)
T ss_pred hhCCHHHHHH
Confidence 9999987654
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=80.01 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+..++++.+++.|+..|.+..-.+. +.....|.++++++++.+++|||++||+.+.+|+.++++.+|+|+++.|.
T Consensus 438 ~~~~~~~~~~~~~Gageil~t~id~D---Gt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~ 513 (538)
T PLN02617 438 IGAYELAKAVEELGAGEILLNCIDCD---GQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAG 513 (538)
T ss_pred CCHHHHHHHHHhcCCCEEEEeecccc---ccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEe
Confidence 47899999999999999999433222 23344689999999999999999999999999999999778999999884
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00026 Score=67.56 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++...++...+..|++.|.+-.-. +.....+.+.++++++.+++|++..|||+|.+++++++ ..|||+|.+|
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~s-----Ga~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~-~~GAD~VVVG 205 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGS-----GASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIV-LAGADAIVTG 205 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCC-----CCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHH-HcCCCEEEeC
Confidence 456777888888999999882211 12223468999999999999999999999999999998 6789999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.8e-05 Score=69.17 Aligned_cols=104 Identities=14% Similarity=0.207 Sum_probs=74.3
Q ss_pred CChH-HHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEE--EEEccccCCCCCCCCCCCHHHHHHHHhh
Q psy7343 254 DDWP-LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLL--AVHGRTVDQRGMNTGLASWEHITAVRKA 330 (487)
Q Consensus 254 ~d~~-~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I--~VhgRt~~~~g~~~g~~~~~~i~~i~~~ 330 (487)
.+|+ .+.++++..+ ..+.-+.+ |. +..|-...+.+.|+|.| +++|-|.... ....+|++.++++.+
T Consensus 110 ~RP~~~~~~~i~~~k-~~~~l~MA------D~-St~ee~l~a~~~G~D~IGTTLsGYT~~~~--~~~~pDf~lvk~l~~- 178 (229)
T COG3010 110 PRPDGDLEELIARIK-YPGQLAMA------DC-STFEEGLNAHKLGFDIIGTTLSGYTGYTE--KPTEPDFQLVKQLSD- 178 (229)
T ss_pred CCCcchHHHHHHHhh-cCCcEEEe------cc-CCHHHHHHHHHcCCcEEecccccccCCCC--CCCCCcHHHHHHHHh-
Confidence 4566 7788887643 23433444 44 34455567788999988 4445443222 233568999999988
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 331 ~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.+.+||+-|.+.|++++++.+ +.||++|.+|.+ +.+|.
T Consensus 179 ~~~~vIAEGr~~tP~~Ak~a~-~~Ga~aVvVGsA-ITRp~ 216 (229)
T COG3010 179 AGCRVIAEGRYNTPEQAKKAI-EIGADAVVVGSA-ITRPE 216 (229)
T ss_pred CCCeEEeeCCCCCHHHHHHHH-HhCCeEEEECcc-cCCHH
Confidence 899999999999999999999 799999999964 44553
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00057 Score=67.30 Aligned_cols=152 Identities=19% Similarity=0.227 Sum_probs=98.7
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEee--cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDIN--IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN--~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
...|+.||+--+|+.....+|.... .+.|.+| .|. ..+-. +....+...+.+.-+.+. .++.|...++
T Consensus 78 ~~~p~GvnvL~nd~~aal~iA~a~g--a~FIRv~~~~g~--~~~d~----G~~~~~a~e~~r~r~~l~--~~v~i~adV~ 147 (257)
T TIGR00259 78 VSIPLGINVLRNDAVAALAIAMAVG--AKFIRVNVLTGV--YASDQ----GIIEGNAGELIRYKKLLG--SEVKILADIV 147 (257)
T ss_pred cCCCeeeeeecCCCHHHHHHHHHhC--CCEEEEccEeee--Eeccc----ccccccHHHHHHHHHHcC--CCcEEEecee
Confidence 3569999988778766666555443 3445444 222 11111 122334445555444444 2566766654
Q ss_pred c--cc--ccccHHHHHHHHHHcC-CcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHh
Q psy7343 280 I--YQ--DVNKTVEYARMLERAG-CQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 280 ~--~~--d~~~~~e~a~~le~~G-~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~ 353 (487)
. +. ...+..+.++.....| +|+|+|+|.+.. ...+|+.++++++.. +.||+.+|||+ ++.+.++++.
T Consensus 148 ~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG------~~~d~~~l~~vr~~~~~~PvllggGvt-~eNv~e~l~~ 220 (257)
T TIGR00259 148 VKHAVHLGNRDLESIALDTVERGLADAVILSGKTTG------TEVDLELLKLAKETVKDTPVLAGSGVN-LENVEELLSI 220 (257)
T ss_pred ecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCC------CCCCHHHHHHHHhccCCCeEEEECCCC-HHHHHHHHhh
Confidence 3 11 2346777777766666 999999776422 246899999999865 79999999995 7889999853
Q ss_pred cCCcEEEeccccccCccccc
Q psy7343 354 TGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~lf~ 373 (487)
+||+.+|+++- +|..+.
T Consensus 221 --adGviVgS~~K-~~G~~~ 237 (257)
T TIGR00259 221 --ADGVIVATTIK-KDGVFN 237 (257)
T ss_pred --CCEEEECCCcc-cCCccC
Confidence 99999999977 555444
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00034 Score=66.31 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=90.7
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.|+.+-+.-.++... .++.+.++ |+ ..++.|+.. .++...++++.+++ .++++.+-+ .
T Consensus 53 ~~~i~~~~~v~~~~~~--~~~~~~~a--------Ga-d~i~~h~~~------~~~~~~~~i~~~~~-~g~~~~v~~---~ 111 (202)
T cd04726 53 DKIIVADLKTADAGAL--EAEMAFKA--------GA-DIVTVLGAA------PLSTIKKAVKAAKK-YGKEVQVDL---I 111 (202)
T ss_pred CCEEEEEEEeccccHH--HHHHHHhc--------CC-CEEEEEeeC------CHHHHHHHHHHHHH-cCCeEEEEE---e
Confidence 5778775443344321 22333344 33 345555531 23456667777765 377776531 1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEE-ccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVH-GRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~Vh-gRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+..+..+..+ +...|+|.+.++ +++.... .+....+.++++++..++|+++.|||+ .+++.+++ +.|+|++.+
T Consensus 112 ~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~-~~Gad~vvv 185 (202)
T cd04726 112 GVEDPEKRAK-LLKLGVDIVILHRGIDAQAA---GGWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFK-KAGADIVIV 185 (202)
T ss_pred CCCCHHHHHH-HHHCCCCEEEEcCccccccc---CCCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHH-hcCCCEEEE
Confidence 4456667666 667899999884 3322221 123456888888877789999999995 99999999 789999999
Q ss_pred ccccccCcc
Q psy7343 362 AEGNLYNPA 370 (487)
Q Consensus 362 GRa~l~~P~ 370 (487)
|+++....+
T Consensus 186 Gsai~~~~d 194 (202)
T cd04726 186 GRAITGAAD 194 (202)
T ss_pred eehhcCCCC
Confidence 999875443
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00082 Score=66.96 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=66.6
Q ss_pred ccCcEEEEeec-c------cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCC
Q psy7343 270 VQVPVSCKIRI-Y------QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQ 342 (487)
Q Consensus 270 ~~iPV~vKiR~-~------~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~ 342 (487)
.++|+.+.... | .+.+.....++...+.|+|.|-.. +.+ +.+.++++.+..++||++.|||+
T Consensus 138 ~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~---------~~~--~~~~l~~~~~~~~ipV~a~GGi~ 206 (267)
T PRK07226 138 WGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTN---------YTG--DPESFREVVEGCPVPVVIAGGPK 206 (267)
T ss_pred cCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeC---------CCC--CHHHHHHHHHhCCCCEEEEeCCC
Confidence 48898885321 1 112234455677888999999662 222 56788888888899999999999
Q ss_pred --CHHHHHHHHH---hcCCcEEEeccccccCcc
Q psy7343 343 --CLADVEACLA---QTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 343 --s~~da~~~l~---~~Gad~VmiGRa~l~~P~ 370 (487)
|.+++.++++ +.||+|+.+||.++..++
T Consensus 207 ~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~ 239 (267)
T PRK07226 207 TDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED 239 (267)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC
Confidence 8888888753 589999999999987765
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.4e-05 Score=78.95 Aligned_cols=116 Identities=15% Similarity=0.051 Sum_probs=74.5
Q ss_pred hhhcChhHHHHHHhc--CCCCCCeeeeec-cCCHHHHHHHHHhhCCc---CcEEEe----------ec--CCCcceeecc
Q psy7343 185 QFIADKKLRQEILMS--TPEDRPLIIQFC-GNDSKNLTEAAKLAEPH---CDGIDI----------NI--GCPQMVAKRG 246 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~---~d~Idi----------N~--GcP~~i~~~g 246 (487)
.+..+++...++++. ...+.||+|||+ ..|.+++.++++.+.+. .|+|-+ |. +.|. ...+.
T Consensus 137 ~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~-~~~~~ 215 (294)
T cd04741 137 PPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVV-LKPKT 215 (294)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcc-cCCCC
Confidence 455678888888862 334689999999 45667788888877554 455442 21 1111 00011
Q ss_pred Cccc-cccC-ChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 247 HYGA-YLQD-DWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 247 r~G~-~l~~-d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.+|+ .... +|. ..+.+..+++.+ ++||++++ ++.+..++.+.+. +|||+|+| ++.
T Consensus 216 ~~gG~SG~~i~~~-al~~v~~~~~~~~~~ipIig~G----GI~s~~da~e~l~-aGA~~Vqv-~ta 274 (294)
T cd04741 216 GFGGLAGAYLHPL-ALGNVRTFRRLLPSEIQIIGVG----GVLDGRGAFRMRL-AGASAVQV-GTA 274 (294)
T ss_pred CCCCcCchhhHHH-HHHHHHHHHHhcCCCCCEEEeC----CCCCHHHHHHHHH-cCCCceeE-chh
Confidence 1221 1111 233 334556677777 49999998 8889999999997 89999999 664
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0003 Score=69.84 Aligned_cols=133 Identities=18% Similarity=0.153 Sum_probs=96.5
Q ss_pred CCCeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
..|+...+...+++++.+.++.+ ++.+..+.+++|- +++.-.+.++++++.+ ++++.+...
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~----------------~~~~d~~~v~~vr~~~g~~~~l~vDan 137 (265)
T cd03315 74 RVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGR----------------DPARDVAVVAALREAVGDDAELRVDAN 137 (265)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecCC----------------CHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 45666666555777776655544 4446666555431 3445556777788776 455666555
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+++.++..++++.+++.|++.|-- + +. ..+++..+++++.+++||.+.+.+.+..++.++++..++|.|
T Consensus 138 ~~~~~~~a~~~~~~l~~~~i~~iEe-P--------~~-~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v 207 (265)
T cd03315 138 RGWTPKQAIRALRALEDLGLDYVEQ-P--------LP-ADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAV 207 (265)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEC-C--------CC-cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEE
Confidence 5677788899999999999988853 1 21 246888999999999999999999999999999977789988
Q ss_pred Ee
Q psy7343 360 MT 361 (487)
Q Consensus 360 mi 361 (487)
++
T Consensus 208 ~~ 209 (265)
T cd03315 208 NI 209 (265)
T ss_pred EE
Confidence 75
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.8e-05 Score=73.51 Aligned_cols=86 Identities=29% Similarity=0.421 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+++.+.++.+.+.|+..+++--=. ...-.++.+.+.++++.+.+++||-..|||+|.+++++++ +.|++.|.+|+.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLd---gA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll-~~G~~rViiGt~ 106 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLD---GAKAGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALL-DAGVARVIIGTA 106 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeecc---ccccCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHH-HCCCCEEEEecc
Confidence 478999999999999999883211 1111345578999999999999999999999999999999 699999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||.++.+
T Consensus 107 av~~p~~v~~ 116 (241)
T COG0106 107 AVKNPDLVKE 116 (241)
T ss_pred eecCHHHHHH
Confidence 9999999764
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00062 Score=66.99 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=101.3
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec--
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI-- 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~-- 280 (487)
+.|+.||+--+|+.....+|.... .|.|.+|.=|=..++-. +.+..+...+.+.-+.+.. ++.|...+..
T Consensus 80 ~~p~GVnvL~nd~~aalaiA~A~g--a~FIRv~~~~g~~~~d~----G~~~~~a~e~~r~R~~l~a--~v~ilaDV~~kh 151 (254)
T PF03437_consen 80 SVPVGVNVLRNDPKAALAIAAATG--ADFIRVNVFVGAYVTDE----GIIEGCAGELLRYRKRLGA--DVKILADVHVKH 151 (254)
T ss_pred CCCEEeeeecCCCHHHHHHHHHhC--CCEEEecCEEceecccC----ccccccHHHHHHHHHHcCC--CeEEEeeechhh
Confidence 689999988777766555555443 34454442220111111 1222333444443333322 3566665543
Q ss_pred c--cccccHHHHHHHH-HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 281 Y--QDVNKTVEYARML-ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 281 ~--~d~~~~~e~a~~l-e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
+ -...+..+.++.. +..++|+|+|+|... ..+++.+.++++++.+++||+.++|+ |.+.+.++++ -||
T Consensus 152 ~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T------G~~~~~~~l~~vr~~~~~PVlvGSGv-t~~Ni~~~l~--~AD 222 (254)
T PF03437_consen 152 SSPLATRDLEEAAKDAVERGGADAVIVTGKAT------GEPPDPEKLKRVREAVPVPVLVGSGV-TPENIAEYLS--YAD 222 (254)
T ss_pred cccCCCCCHHHHHHHHHHhcCCCEEEECCccc------CCCCCHHHHHHHHhcCCCCEEEecCC-CHHHHHHHHH--hCC
Confidence 1 1223455555544 778999999976532 22468899999999999999998888 4788988883 399
Q ss_pred EEEeccccccCcccccCCCCCcHHHHHHHHHH
Q psy7343 358 GVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389 (487)
Q Consensus 358 ~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~ 389 (487)
|+.||+.+-.|-.+..... .+-+++|.+.
T Consensus 223 G~IVGS~~K~~G~~~n~VD---~~Rv~~fm~~ 251 (254)
T PF03437_consen 223 GAIVGSYFKKDGKWENPVD---PERVRRFMEA 251 (254)
T ss_pred EEEEeeeeeeCCEeCCcCC---HHHHHHHHHH
Confidence 9999998777666554332 2444554443
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.9e-05 Score=79.90 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=79.4
Q ss_pred hhcChhHHHHHHh--cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCC
Q psy7343 186 FIADKKLRQEILM--STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDD 255 (487)
Q Consensus 186 Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d 255 (487)
|.+......++++ +...+.||+++|. |.+.++..++++.+++. +|.|+++.|.... .....+.+ .+
T Consensus 188 lenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-~~~~~~~~---~~ 263 (337)
T PRK13523 188 PENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP-ARIDVYPG---YQ 263 (337)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCcc---cc
Confidence 3333444445553 1122579999987 34678889999988876 8999999886211 01010111 13
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~ 331 (487)
++ +.+.+++.+++||++.+ ++.+..++.+.+++.++|.|++ ||... ++-+++.++++.+
T Consensus 264 ~~----~~~~ik~~~~ipVi~~G----~i~~~~~a~~~l~~g~~D~V~~-gR~~i--------adP~~~~k~~~~~ 322 (337)
T PRK13523 264 VP----FAEHIREHANIATGAVG----LITSGAQAEEILQNNRADLIFI-GRELL--------RNPYFPRIAAKEL 322 (337)
T ss_pred HH----HHHHHHhhcCCcEEEeC----CCCCHHHHHHHHHcCCCChHHh-hHHHH--------hCccHHHHHHHHc
Confidence 33 44557777899999998 5556777777777777999999 88432 2334566666654
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00019 Score=74.37 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=102.7
Q ss_pred CCCeeeeeccC--CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEE
Q psy7343 203 DRPLIIQFCGN--DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCK 277 (487)
Q Consensus 203 ~~Pv~Vqi~g~--d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vK 277 (487)
..|+...+... +++++.+.++.+.+. ++.+.|+.|..... .++++...++++++++.+ ++++.+.
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~----------~~~~~~d~~~v~~ir~~~g~~~~l~vD 195 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG----------GEDLREDLARVRAVREAVGPDVDLMVD 195 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc----------hHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 45666655433 588888777765444 88888887752111 045677788888898887 4667766
Q ss_pred eecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 278 IRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 278 iR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
..-+++.++..++++.+++.|++.|.- + . ...+++..+++++.+++||++.+.+.+++|+.++++...+|
T Consensus 196 aN~~~~~~~a~~~~~~l~~~~i~~iEq--------P-~-~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d 265 (357)
T cd03316 196 ANGRWDLAEAIRLARALEEYDLFWFEE--------P-V-PPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVD 265 (357)
T ss_pred CCCCCCHHHHHHHHHHhCccCCCeEcC--------C-C-CccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCC
Confidence 544677778888889998888877642 1 1 12368889999999999999999999999999999777788
Q ss_pred EEEec
Q psy7343 358 GVMTA 362 (487)
Q Consensus 358 ~VmiG 362 (487)
.|.+-
T Consensus 266 ~v~~k 270 (357)
T cd03316 266 IIQPD 270 (357)
T ss_pred EEecC
Confidence 88653
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.1e-05 Score=74.18 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=68.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.+.|+.+++.|+++++|--= .. ..+.+.+.++++++ +++||-..|||++ +++++++ +.||+.|++|+.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDL---dg---g~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l-~~Ga~rViigT~ 113 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIML---GA---DDASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYL-DAGASHVIVTSY 113 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEC---CC---CCcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHH-HcCCCEEEEchH
Confidence 48999999999999999988322 11 22456899999999 8899999999996 9999999 799999999999
Q ss_pred cccC----ccccc
Q psy7343 365 NLYN----PALFT 373 (487)
Q Consensus 365 ~l~~----P~lf~ 373 (487)
++.| |.+++
T Consensus 114 Av~~~~~~p~~v~ 126 (262)
T PLN02446 114 VFRDGQIDLERLK 126 (262)
T ss_pred HHhCCCCCHHHHH
Confidence 9999 87765
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00069 Score=66.69 Aligned_cols=151 Identities=22% Similarity=0.182 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCc------cccc--cCChHHHHHHHHHHhhh-ccCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY------GAYL--QDDWPLLTNLVSSLRQA-VQVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~------G~~l--~~d~~~i~eiv~~v~~~-~~iPV~vKiR~~~ 282 (487)
.+.+...++++.+.+. .|.||| |.|..-..-++. --+| .-..+.+.++++.+++. .++|+++=+=.+.
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iEL--GvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np 105 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILEL--GVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP 105 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEe--cCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccH
Confidence 4788999999976665 999998 665422111100 0011 13567788899999854 6889887431111
Q ss_pred -ccccHHHHHHHHHHcCCcEEEE-----------------Ec--------cc-c--------C---------CCCCCCCC
Q psy7343 283 -DVNKTVEYARMLERAGCQLLAV-----------------HG--------RT-V--------D---------QRGMNTGL 318 (487)
Q Consensus 283 -d~~~~~e~a~~le~~G~d~I~V-----------------hg--------Rt-~--------~---------~~g~~~g~ 318 (487)
-..-.+++.+.+.++|+|++.| || -| . . ...+.+|.
T Consensus 106 i~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~ 185 (265)
T COG0159 106 IFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGA 185 (265)
T ss_pred HHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCC
Confidence 0013455677777777777766 11 00 0 0 01112221
Q ss_pred C------CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 319 A------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 319 ~------~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
. --+.++++|+..++||...=||+++++++++. +. ||||.+|+++..
T Consensus 186 ~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~-~~-ADGVIVGSAiV~ 238 (265)
T COG0159 186 RNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVA-EA-ADGVIVGSAIVK 238 (265)
T ss_pred CcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHH-Hh-CCeEEEcHHHHH
Confidence 1 13778899999999999999999999999999 45 999999997653
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=69.16 Aligned_cols=141 Identities=22% Similarity=0.243 Sum_probs=94.1
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeec-
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRI- 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~- 280 (487)
..|++|- .......++.+++....|-|-||-.. ..||+++.++-+..-..+ -+-|-+|-+.
T Consensus 74 fiPltVG---GGI~s~eD~~~ll~aGADKVSINsaA--------------v~~p~lI~~~a~~FGsQciVvaIDakr~~~ 136 (256)
T COG0107 74 FIPLTVG---GGIRSVEDARKLLRAGADKVSINSAA--------------VKDPELITEAADRFGSQCIVVAIDAKRVPD 136 (256)
T ss_pred eeeeEec---CCcCCHHHHHHHHHcCCCeeeeChhH--------------hcChHHHHHHHHHhCCceEEEEEEeeeccC
Confidence 4566653 22333444556666667777777333 357888887666543322 1122223221
Q ss_pred -----------cc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 281 -----------YQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 281 -----------~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
++ ...+..++++..++.|+-.|.+.. ..+.+....-|.+.++.+++.+++|||++||.-++++
T Consensus 137 g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLts---mD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~~eh 213 (256)
T COG0107 137 GENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTS---MDRDGTKAGYDLELTRAVREAVNIPVIASGGAGKPEH 213 (256)
T ss_pred CCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEee---ecccccccCcCHHHHHHHHHhCCCCEEecCCCCcHHH
Confidence 01 123789999999999999998832 2222233335899999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEecc
Q psy7343 347 VEACLAQTGVAGVMTAE 363 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGR 363 (487)
+.+.+.++.||++..+.
T Consensus 214 f~eaf~~~~adAaLAAs 230 (256)
T COG0107 214 FVEAFTEGKADAALAAS 230 (256)
T ss_pred HHHHHHhcCccHHHhhh
Confidence 99999777799887664
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.2e-05 Score=73.36 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=65.0
Q ss_pred cH-HHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KT-VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~-~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+. .+.++.+++.|++.++|-. + |..+.+.++++.+.+++||...|||++ +++++++ +.||+.|.+|+.
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvVD--------L-g~~n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l-~aGa~rVvIGS~ 106 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVIM--------L-GPNNDDAAKEALHAYPGGLQVGGGIND-TNAQEWL-DEGASHVIVTSW 106 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEE--------C-CCCcHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHH-HcCCCEEEECcH
Confidence 34 8999999999999999832 2 334899999999999999999999998 9999999 799999999999
Q ss_pred cccCc
Q psy7343 365 NLYNP 369 (487)
Q Consensus 365 ~l~~P 369 (487)
++.||
T Consensus 107 av~~~ 111 (253)
T TIGR02129 107 LFTKG 111 (253)
T ss_pred HHhCC
Confidence 99984
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.9e-05 Score=76.85 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=69.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.+.++.+++.|++.+.|.-=.+.. .....+++.++++.+.+.+||.+.|||+|.+|+++++ +.||+.|.+|+.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~---~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll-~~Ga~~Vvigt~ 104 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAK---EGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLL-DAGADRVVIGTE 104 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHC---CTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHH-HTT-SEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcc---cCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHH-HhCCCEEEeChH
Confidence 478999999999999999984322111 1123578999999999999999999999999999999 789999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||.++.+
T Consensus 105 ~~~~~~~l~~ 114 (229)
T PF00977_consen 105 ALEDPELLEE 114 (229)
T ss_dssp HHHCCHHHHH
T ss_pred HhhchhHHHH
Confidence 9999998764
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00041 Score=67.54 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=67.0
Q ss_pred hccCcEEEEeeccc-------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCC
Q psy7343 269 AVQVPVSCKIRIYQ-------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNI 341 (487)
Q Consensus 269 ~~~iPV~vKiR~~~-------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI 341 (487)
..++|+++.....+ +.++....++...+.|+|.|-+. ++ .+.+.++++.+..++||++.||+
T Consensus 120 ~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~---------~~--~~~~~~~~i~~~~~~pvv~~GG~ 188 (235)
T cd00958 120 KYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK---------YT--GDAESFKEVVEGCPVPVVIAGGP 188 (235)
T ss_pred HcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec---------CC--CCHHHHHHHHhcCCCCEEEeCCC
Confidence 35899999865410 11233444677888999999882 11 25788999999999999998987
Q ss_pred --CCHHH----HHHHHHhcCCcEEEeccccccCcc
Q psy7343 342 --QCLAD----VEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 342 --~s~~d----a~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.|.+| +.+++ +.|+++|.+||.++..++
T Consensus 189 ~~~~~~~~l~~~~~~~-~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 189 KKDSEEEFLKMVYDAM-EAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred CCCCHHHHHHHHHHHH-HcCCcEEEechhhhcCCC
Confidence 67766 56667 699999999999997764
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.001 Score=65.87 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHhhh---ccCcEEEEee-----ccc-ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHH
Q psy7343 256 WPLLTNLVSSLRQA---VQVPVSCKIR-----IYQ-DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326 (487)
Q Consensus 256 ~~~i~eiv~~v~~~---~~iPV~vKiR-----~~~-d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~ 326 (487)
++.+ +.++++++. .++|+++..- ++. +.+...+.++...+.|+|+|-+. +. .+.+.+++
T Consensus 119 ~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~---------~~--~~~~~l~~ 186 (258)
T TIGR01949 119 WEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP---------YT--GDIDSFRD 186 (258)
T ss_pred HHHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc---------CC--CCHHHHHH
Confidence 3444 334444443 4789888432 111 12233444677788999999872 11 25788999
Q ss_pred HHhhCCCcEEEcCCCC--CHHHHHHHHH---hcCCcEEEeccccccCcc
Q psy7343 327 VRKALTIPVIANGNIQ--CLADVEACLA---QTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 327 i~~~~~iPVi~nGgI~--s~~da~~~l~---~~Gad~VmiGRa~l~~P~ 370 (487)
+.+..++||++.|||+ |.+++.+.++ +.|++|+.+||.++..++
T Consensus 187 ~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d 235 (258)
T TIGR01949 187 VVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD 235 (258)
T ss_pred HHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC
Confidence 9988899999999999 6665554442 689999999999987765
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.8e-05 Score=82.55 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=70.2
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCH-----------HHHHHHH
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCL-----------ADVEACL 351 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~-----------~da~~~l 351 (487)
+..++.++++.+++.|+|.|++-.=+....+......+++.++++.+.+.+|+.+.|||+|. +++++++
T Consensus 265 ~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l 344 (538)
T PLN02617 265 NLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYF 344 (538)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHH
Confidence 34589999999999999999885443321111222345899999999999999999999998 6689999
Q ss_pred HhcCCcEEEeccccccCcc
Q psy7343 352 AQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 352 ~~~Gad~VmiGRa~l~~P~ 370 (487)
..|||-|.||++++.||.
T Consensus 345 -~~GadkV~i~s~Av~~~~ 362 (538)
T PLN02617 345 -RSGADKISIGSDAVYAAE 362 (538)
T ss_pred -HcCCCEEEEChHHHhChh
Confidence 799999999999999873
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00014 Score=71.89 Aligned_cols=150 Identities=20% Similarity=0.190 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHh-hhccCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLR-QAVQVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~-~~~~iPV~vKiR~~~ 282 (487)
.|.+.+.++++.+.+. +|.||| |-|.....-++ .-.+| --+.+.+.++++.++ +..++|+++=.=.+
T Consensus 21 P~~~~~~~~~~~l~~~GaD~iEi--GiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N- 97 (259)
T PF00290_consen 21 PDLETTLEILKALEEAGADIIEI--GIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYN- 97 (259)
T ss_dssp SSHHHHHHHHHHHHHTTBSSEEE--E--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HH-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE--CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeecc-
Confidence 4678899999887775 899988 44432111110 00011 135778888899999 77789998854111
Q ss_pred cc--ccHHHHHHHHHHcCCcEEEEEc--------------------------cccC-----------------CCCCCCC
Q psy7343 283 DV--NKTVEYARMLERAGCQLLAVHG--------------------------RTVD-----------------QRGMNTG 317 (487)
Q Consensus 283 d~--~~~~e~a~~le~~G~d~I~Vhg--------------------------Rt~~-----------------~~g~~~g 317 (487)
.+ ...+++.+.+.++|+|+++|-. -|.. ...+.+|
T Consensus 98 ~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG 177 (259)
T PF00290_consen 98 PIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTG 177 (259)
T ss_dssp HHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSS
T ss_pred HHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCC
Confidence 11 1245667777777777776611 0100 1112233
Q ss_pred CC------CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 318 LA------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 318 ~~------~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.. .-+.++++|+..+.||...=||++++++.++. .|||||.||++++.
T Consensus 178 ~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 178 SRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA--AGADGVIVGSAFVK 231 (259)
T ss_dssp TTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH--TTSSEEEESHHHHH
T ss_pred CcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH--ccCCEEEECHHHHH
Confidence 22 13788899999999999999999999999988 78999999997654
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0001 Score=75.82 Aligned_cols=112 Identities=23% Similarity=0.283 Sum_probs=74.5
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccc
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 252 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l 252 (487)
.|.++.+...++++ ....+.||.+++. +.+.++..++++.+++. .|.|+++.|....... . ..
T Consensus 199 sl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~-~----~~ 273 (336)
T cd02932 199 SLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQK-I----PV 273 (336)
T ss_pred CHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccc-c----CC
Confidence 44455555555553 3445789999976 34678888999988876 8999998775211100 0 00
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
. +....+..+.+++.+++||++.+ ++.+..++.+.+++..+|.|++ ||.
T Consensus 274 ~--~~~~~~~~~~ir~~~~iPVi~~G----~i~t~~~a~~~l~~g~aD~V~~-gR~ 322 (336)
T cd02932 274 G--PGYQVPFAERIRQEAGIPVIAVG----LITDPEQAEAILESGRADLVAL-GRE 322 (336)
T ss_pred C--ccccHHHHHHHHhhCCCCEEEeC----CCCCHHHHHHHHHcCCCCeehh-hHH
Confidence 0 11112445567778899999997 5667788888888777999999 884
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0011 Score=64.43 Aligned_cols=142 Identities=13% Similarity=0.183 Sum_probs=87.1
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.++.+.+.-.+++++.+.+..+ .+|+|-+|.|- ...+...+.++.+++. +.-+.+-+
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~~~~--gad~v~vH~~q---------------~~~d~~~~~~~~i~~~-g~~iGls~--- 122 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDFAKA--GASIFTFHIEQ---------------ASTIHLHRLIQQIKSA-GMKAGVVL--- 122 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHHHHc--CCCEEEEeecc---------------ccchhHHHHHHHHHHC-CCeEEEEE---
Confidence 345677888877898888776332 35566555541 0112334445555432 33333332
Q ss_pred cccccHHHHHHHHHHcC-CcEEEE---EccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 282 QDVNKTVEYARMLERAG-CQLLAV---HGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G-~d~I~V---hgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
...+..+.++.+.+.| +|.|.+ +..+..+. ..+...+.++++++.. ++||.+-||| +.+++.++. +.|+
T Consensus 123 -~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~---~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~-~aGa 196 (229)
T PLN02334 123 -NPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQS---FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAA-EAGA 196 (229)
T ss_pred -CCCCCHHHHHHHHhccCCCEEEEEEEecCCCccc---cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHH-HcCC
Confidence 2224456666565554 999965 22211111 1122346777887764 6899999999 689999999 7999
Q ss_pred cEEEeccccccCcc
Q psy7343 357 AGVMTAEGNLYNPA 370 (487)
Q Consensus 357 d~VmiGRa~l~~P~ 370 (487)
|++.+|++++..++
T Consensus 197 d~vvvgsai~~~~d 210 (229)
T PLN02334 197 NVIVAGSAVFGAPD 210 (229)
T ss_pred CEEEEChHHhCCCC
Confidence 99999999876654
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.2e-05 Score=72.55 Aligned_cols=84 Identities=17% Similarity=0.076 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.+.++.+.+.|++.+.|-.=... .....+.+.++++.+....|+...|||+|.+|+++++ +.||+.|.+|+.+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a----~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l-~~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA----EGVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLL-SLDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc----CCCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHH-HCCCCEEEECchh
Confidence 7899999999999999998332111 1234567999999885445999999999999999999 7899999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||.++++
T Consensus 106 ~~~p~~~~~ 114 (232)
T PRK13586 106 FTNFNLFHD 114 (232)
T ss_pred hCCHHHHHH
Confidence 999998764
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00077 Score=64.09 Aligned_cols=141 Identities=13% Similarity=0.170 Sum_probs=80.5
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
+.|+.+-+..+|+.++.+.+. +. .|+|-+| +. .. +...+.++.+++ .++.+.+-+
T Consensus 57 ~~~~~v~l~~~d~~~~~~~~~---~~g~dgv~vh----------~~------~~-~~~~~~~~~~~~-~~~~~g~~~--- 112 (211)
T cd00429 57 DLPLDVHLMVENPERYIEAFA---KAGADIITFH----------AE------AT-DHLHRTIQLIKE-LGMKAGVAL--- 112 (211)
T ss_pred CCcEEEEeeeCCHHHHHHHHH---HcCCCEEEEC----------cc------ch-hhHHHHHHHHHH-CCCeEEEEe---
Confidence 457777777778766655443 33 4554444 32 01 222334444443 244444443
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
...+..+..+.+.+ ++|.+.+.+......+.......++.++++++.. ++|+++.|||+. +++.+++ +.|+
T Consensus 113 -~~~~~~~~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~-~~ga 188 (211)
T cd00429 113 -NPGTPVEVLEPYLD-EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLA-EAGA 188 (211)
T ss_pred -cCCCCHHHHHHHHh-hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHH-HcCC
Confidence 22223444444433 3898877443221111101111235566666665 489999999996 9999998 7999
Q ss_pred cEEEeccccccCccc
Q psy7343 357 AGVMTAEGNLYNPAL 371 (487)
Q Consensus 357 d~VmiGRa~l~~P~l 371 (487)
|++.+|++++..++.
T Consensus 189 d~iivgsai~~~~~~ 203 (211)
T cd00429 189 DVLVAGSALFGSDDY 203 (211)
T ss_pred CEEEECHHHhCCCCH
Confidence 999999999876653
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=70.55 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=71.8
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeec------cc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI------YQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~------~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~ 319 (487)
|+... +++++.++.+... ++-+++-.|- +| ...+..++++.+++. +..+.+..-.+... ..|+.
T Consensus 102 Gtaa~-~~~~l~~~~~~~g---~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt--~~G~d 174 (228)
T PRK04128 102 GTKAF-DLEFLEKVTSEFE---GITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGT--LTGIE 174 (228)
T ss_pred Cchhc-CHHHHHHHHHHcC---CEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhc--ccCHH
Confidence 34444 7998888777552 1222332221 12 223568899999888 99998855444332 44532
Q ss_pred CHHHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 320 SWEHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 320 ~~~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++.+. .++|||++|||.|.+|+.++. +.|+++|.+|++++..
T Consensus 175 ------~l~~~~~~~pviasGGv~~~~Dl~~l~-~~g~~gvivg~al~~g 217 (228)
T PRK04128 175 ------EIERFWGDEEFIYAGGVSSAEDVKKLA-EIGFSGVIIGKALYEG 217 (228)
T ss_pred ------HHHHhcCCCCEEEECCCCCHHHHHHHH-HCCCCEEEEEhhhhcC
Confidence 22233 589999999999999999998 5899999999998665
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00079 Score=64.08 Aligned_cols=141 Identities=12% Similarity=0.164 Sum_probs=79.3
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
+.|+.+-+...+++++.+.+. +. .|+|-+ |+. ..+...+.++.+++. ++.+.+-+
T Consensus 56 ~~~v~v~lm~~~~~~~~~~~~---~~gadgv~v----------h~~-------~~~~~~~~~~~~~~~-g~~~~~~~--- 111 (210)
T TIGR01163 56 DLPIDVHLMVENPDRYIEDFA---EAGADIITV----------HPE-------ASEHIHRLLQLIKDL-GAKAGIVL--- 111 (210)
T ss_pred CCcEEEEeeeCCHHHHHHHHH---HcCCCEEEE----------ccC-------CchhHHHHHHHHHHc-CCcEEEEE---
Confidence 456666666667766644433 43 455444 332 112223444444432 44444333
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-----CcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-----IPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-----iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
+..+..+..+.+. .++|.|.+.+......+.......++.++++++.++ +|+.+.|||+ .+++.+++ ++|+
T Consensus 112 -~~~t~~e~~~~~~-~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~-~~ga 187 (210)
T TIGR01163 112 -NPATPLEFLEYVL-PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELA-EAGA 187 (210)
T ss_pred -CCCCCHHHHHHHH-hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHH-HcCC
Confidence 3334455555543 468998774432211110001112355555655443 7999999996 79999998 7999
Q ss_pred cEEEeccccccCccc
Q psy7343 357 AGVMTAEGNLYNPAL 371 (487)
Q Consensus 357 d~VmiGRa~l~~P~l 371 (487)
|++.+|++++..++.
T Consensus 188 d~iivgsai~~~~d~ 202 (210)
T TIGR01163 188 DILVAGSAIFGADDY 202 (210)
T ss_pred CEEEEChHHhCCCCH
Confidence 999999999876643
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00034 Score=71.78 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=79.9
Q ss_pred chhhhcChhHHHHHHhc----C---CCCCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCccee-----eccCc
Q psy7343 183 AHQFIADKKLRQEILMS----T---PEDRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVA-----KRGHY 248 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~~----~---~~~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~-----~~gr~ 248 (487)
+....++++...++++. . ..+.||+||+.. .+.+++.++++.++++ .|+|.++-.-+.... ....+
T Consensus 175 g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~ 254 (327)
T cd04738 175 GLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANET 254 (327)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCC
Confidence 34446777777777652 1 124899999984 4456788888888776 899987644321110 01111
Q ss_pred cc-cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 249 GA-YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 249 G~-~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
|+ ..........+.+..+++.+ ++||++.+ ++.+..++.+.+. +|||.|+| ||..
T Consensus 255 gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~G----GI~t~~da~e~l~-aGAd~V~v-g~~~ 312 (327)
T cd04738 255 GGLSGAPLKERSTEVLRELYKLTGGKIPIIGVG----GISSGEDAYEKIR-AGASLVQL-YTGL 312 (327)
T ss_pred CccCChhhhHHHHHHHHHHHHHhCCCCcEEEEC----CCCCHHHHHHHHH-cCCCHHhc-cHHH
Confidence 11 11222334456677777777 79999997 8889999999997 99999999 7743
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=72.45 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+..+.++.+++.|+..+.|--=... .....+.+.++++.+.+.+|+...|||+|.+|+++++ ..|||.|++|+.+
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a----~g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l-~~Ga~~vvigT~a 106 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAA----FGGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAAL-TGGRARVNGGTAA 106 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCC----CCCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHH-HcCCCEEEECchh
Confidence 5567788889999998888321111 1234578999999999999999999999999999999 6899999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||+++.+
T Consensus 107 ~~~p~~~~~ 115 (243)
T TIGR01919 107 LENPWWAAA 115 (243)
T ss_pred hCCHHHHHH
Confidence 999988753
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0013 Score=62.56 Aligned_cols=105 Identities=18% Similarity=0.270 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcE
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPV 335 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPV 335 (487)
..+.++++.+++ .++++.+.+ .+..+..+.++.+.+.|+|.|.++.....+. .+...++.++++++.++ .++
T Consensus 89 ~~~~~~i~~~~~-~g~~~~~~~---~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~---~~~~~~~~i~~l~~~~~~~~i 161 (206)
T TIGR03128 89 ATIKGAVKAAKK-HGKEVQVDL---INVKDKVKRAKELKELGADYIGVHTGLDEQA---KGQNPFEDLQTILKLVKEARV 161 (206)
T ss_pred HHHHHHHHHHHH-cCCEEEEEe---cCCCChHHHHHHHHHcCCCEEEEcCCcCccc---CCCCCHHHHHHHHHhcCCCcE
Confidence 345666666665 488888763 1444566666777778999998853222222 22345677888887764 455
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
...||| +.+.+.+++ +.|+|++.+||+++..+.
T Consensus 162 ~v~GGI-~~~n~~~~~-~~Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 162 AVAGGI-NLDTIPDVI-KLGPDIVIVGGAITKAAD 194 (206)
T ss_pred EEECCc-CHHHHHHHH-HcCCCEEEEeehhcCCCC
Confidence 558999 789999999 789999999999876543
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00068 Score=65.05 Aligned_cols=130 Identities=19% Similarity=0.262 Sum_probs=86.5
Q ss_pred HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecc-cccccHHHHHHHH
Q psy7343 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIY-QDVNKTVEYARML 294 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~-~d~~~~~e~a~~l 294 (487)
...++.+.++...|.||+-+-. |.....+++.+.+-++++++.+ ++|+.+-+-.+ -+.++....++..
T Consensus 72 K~~E~~~Av~~GAdEiDvv~n~----------g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia 141 (211)
T TIGR00126 72 KLYETKEAIKYGADEVDMVINI----------GALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEIC 141 (211)
T ss_pred HHHHHHHHHHcCCCEEEeecch----------HhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 4455555666668888864332 2222247888888788888766 44444421111 1234567888889
Q ss_pred HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.++|+|.|-.+ - |+..+.+..+.++.+++.+ +++|-++|||+|.+++.+++ +.|++.+....
T Consensus 142 ~eaGADfvKTs-T-----Gf~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i-~aGa~riGts~ 205 (211)
T TIGR00126 142 IDAGADFVKTS-T-----GFGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMI-EAGASRIGASA 205 (211)
T ss_pred HHhCCCEEEeC-C-----CCCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHH-HHhhHHhCcch
Confidence 99999999762 1 1123456677777666665 69999999999999999999 68888766544
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00012 Score=70.52 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=67.6
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+.+.....+.+.+..|...|-+-+. | ...+.+.++++++.+ ++|+++.|||+|.+++++++ +.|||+|.+
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe~S-----G---~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVV 203 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLEYS-----G---AYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMA-EAGADTIVV 203 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeCCC-----C---CcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEE
Confidence 3446677788888899776666211 1 114688999999998 99999999999999999999 789999999
Q ss_pred ccccccCcccccC
Q psy7343 362 AEGNLYNPALFTG 374 (487)
Q Consensus 362 GRa~l~~P~lf~~ 374 (487)
|+++..||.++.+
T Consensus 204 Gsai~~~p~~~~~ 216 (219)
T cd02812 204 GNIVEEDPNAALE 216 (219)
T ss_pred CchhhCCHHHHHH
Confidence 9999999887653
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00017 Score=70.45 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=71.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.++++.+++.|++.+.|---.+. .....+.+.++++.+.+.+|+...|||+|.+|+++++ ..||+.|.+|+.
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~----~~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l-~~Ga~~viigt~ 109 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAI----MGRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWL-KRGASRVIVGTE 109 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCccc----cCCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHH-HcCCCeEEEcce
Confidence 37899999999999999998443222 1234678999999999999999999999999999999 799999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
.+.| .++.
T Consensus 110 ~~~~-~~~~ 117 (233)
T cd04723 110 TLPS-DDDE 117 (233)
T ss_pred eccc-hHHH
Confidence 9999 7754
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00051 Score=70.78 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=67.6
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeecc----------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFCG----------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGA 250 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g----------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~ 250 (487)
+.+......++++ ....+ +|++++.. .+.+++.++++.+++. .|.|++..|...... .
T Consensus 198 lenR~rf~~eii~air~~vg~d-~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-----~- 270 (338)
T cd02933 198 IENRARFLLEVVDAVAEAIGAD-RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-----E- 270 (338)
T ss_pred HHHhhhHHHHHHHHHHHHhCCC-ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----c-
Confidence 3334444455553 23334 79999853 2567888999998876 899998666422111 1
Q ss_pred cccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
...++ ..+.+++.+++||++.+++ . ..++.+.+++.++|.|++ ||.
T Consensus 271 --~~~~~----~~~~ik~~~~ipvi~~G~i----~-~~~a~~~l~~g~~D~V~~-gR~ 316 (338)
T cd02933 271 --DQPPD----FLDFLRKAFKGPLIAAGGY----D-AESAEAALADGKADLVAF-GRP 316 (338)
T ss_pred --ccchH----HHHHHHHHcCCCEEEECCC----C-HHHHHHHHHcCCCCEEEe-CHh
Confidence 12333 4445677789999999844 3 666667777777999999 885
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=69.33 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=62.1
Q ss_pred HHHHHHHH-cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 289 EYARMLER-AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 289 e~a~~le~-~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
..+...++ .|...|-+-.. +++..+.+.+.++++++.+ ++|++..|||+|.+++++++ +.|||+|.+|+.+.
T Consensus 139 a~~~lA~~~~g~~~vYlE~g-----s~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVVGs~~~ 212 (223)
T TIGR01768 139 AYAAMAEEMLGMPIIYLEAG-----SGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMA-EAGADTIVTGNVIE 212 (223)
T ss_pred HHHHHHHHHcCCcEEEEEec-----CCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHH-HcCCCEEEECcHHh
Confidence 33334444 57776666211 2244556789999999998 99999999999999999999 67999999999999
Q ss_pred cCcccccC
Q psy7343 367 YNPALFTG 374 (487)
Q Consensus 367 ~~P~lf~~ 374 (487)
.||..+.+
T Consensus 213 ~dp~~~~~ 220 (223)
T TIGR01768 213 EDVDKALE 220 (223)
T ss_pred hCHHHHHH
Confidence 99877653
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0019 Score=67.44 Aligned_cols=140 Identities=16% Similarity=0.251 Sum_probs=94.8
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE-Eeec
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC-KIRI 280 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v-KiR~ 280 (487)
.+.++.+-+.-.|+.+++ ++.+.++ |+ ..++.|+.. ..+.+.+.++.+++. ++-+.+ -+
T Consensus 225 ~~~~I~~DLK~~Di~~~v--v~~~a~a--------GA-D~vTVH~ea------~~~ti~~ai~~akk~-GikvgVD~l-- 284 (391)
T PRK13307 225 PDAFIVADLKTLDTGNLE--ARMAADA--------TA-DAVVISGLA------PISTIEKAIHEAQKT-GIYSILDML-- 284 (391)
T ss_pred CCCeEEEEecccChhhHH--HHHHHhc--------CC-CEEEEeccC------CHHHHHHHHHHHHHc-CCEEEEEEc--
Confidence 356788888877877764 4444444 33 455666542 344566777777654 665555 33
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+..+..+.++.+ ..++|.|.+|.....+ .....|+.++++++. .+++|...|||+ .+++.+++ +.|+|.+
T Consensus 285 --np~tp~e~i~~l-~~~vD~Vllht~vdp~----~~~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~-~aGADiv 355 (391)
T PRK13307 285 --NVEDPVKLLESL-KVKPDVVELHRGIDEE----GTEHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEAL-KAGADIL 355 (391)
T ss_pred --CCCCHHHHHHHh-hCCCCEEEEccccCCC----cccchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHH-HcCCCEE
Confidence 445666777766 6799999997322211 113457788888875 478999999998 88898888 7999999
Q ss_pred EeccccccCcc
Q psy7343 360 MTAEGNLYNPA 370 (487)
Q Consensus 360 miGRa~l~~P~ 370 (487)
.+||++...++
T Consensus 356 VVGsaIf~a~D 366 (391)
T PRK13307 356 VVGRAITKSKD 366 (391)
T ss_pred EEeHHHhCCCC
Confidence 99999765443
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.001 Score=68.14 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=97.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+.|++.|||.++|+..|...+.+.|. +++..+|.. +.+ ...+.... ++..+.+. . +..
T Consensus 34 ~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~-------~~~i~~vk-~~l~v~~~--~---~~~------- 92 (325)
T cd00381 34 NIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQ-------AEEVRKVK-GRLLVGAA--V---GTR------- 92 (325)
T ss_pred CCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHH-------HHHHHHhc-cCceEEEe--c---CCC-------
Confidence 45899999999999999998888886 877777632 222 11221111 22222221 1 100
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHh---cCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEE
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM---STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGID 233 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~---~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~Id 233 (487)
-.+...-....+.|++...-.+-.+ +++...+.++ ....+.||++ | +......+.+.++..+|+|.
T Consensus 93 --~~~~~~~~~l~eagv~~I~vd~~~G-----~~~~~~~~i~~ik~~~p~v~Vi~---G-~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 93 --EDDKERAEALVEAGVDVIVIDSAHG-----HSVYVIEMIKFIKKKYPNVDVIA---G-NVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred --hhHHHHHHHHHhcCCCEEEEECCCC-----CcHHHHHHHHHHHHHCCCceEEE---C-CCCCHHHHHHHHhcCCCEEE
Confidence 0111222333446765432111111 1111222222 1111345544 2 22222233333334489988
Q ss_pred eecCCCcceee-ccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 234 INIGCPQMVAK-RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 234 iN~GcP~~i~~-~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
+.+|. -.... +...| ....++..+.++.+.+. ..++||++.+ .+.+..++++.+. .|+|+||+ |+.
T Consensus 162 vg~g~-G~~~~t~~~~g-~g~p~~~~i~~v~~~~~-~~~vpVIA~G----GI~~~~di~kAla-~GA~~Vmi-Gt~ 228 (325)
T cd00381 162 VGIGP-GSICTTRIVTG-VGVPQATAVADVAAAAR-DYGVPVIADG----GIRTSGDIVKALA-AGADAVML-GSL 228 (325)
T ss_pred ECCCC-CcCcccceeCC-CCCCHHHHHHHHHHHHh-hcCCcEEecC----CCCCHHHHHHHHH-cCCCEEEe-cch
Confidence 86442 11100 00001 11235666777666443 3479999987 7778899999886 99999999 653
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0046 Score=60.78 Aligned_cols=151 Identities=22% Similarity=0.211 Sum_probs=100.2
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccC--cEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV--PVS 275 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i--PV~ 275 (487)
....|+++-+- | .++++..+.++.+.+. +++|.|.=+... .+.|.+|+...-+.+...+.+++++++.+- ++.
T Consensus 67 ~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~--k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~ 144 (243)
T cd00377 67 AVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGP--KKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFV 144 (243)
T ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCC--ccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeE
Confidence 34679988865 2 3667777777766555 788888544321 123333444444677777777777776643 677
Q ss_pred EEee-----cc-cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCC-HHHHH
Q psy7343 276 CKIR-----IY-QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC-LADVE 348 (487)
Q Consensus 276 vKiR-----~~-~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s-~~da~ 348 (487)
++.| .+ .+.++..+-++...++|+|.|.+++-. +.+.++++.+..+.|+.++-.=.. .-...
T Consensus 145 IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~-----------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~ 213 (243)
T cd00377 145 IIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVA 213 (243)
T ss_pred EEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHHhcCCCCEEEEecCCCCCCCHH
Confidence 7777 33 356678888899999999999996542 568899999999999987621110 02233
Q ss_pred HHHHhcCCcEEEecccc
Q psy7343 349 ACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa~ 365 (487)
++- +.|++.|.+|-.+
T Consensus 214 ~l~-~lG~~~v~~~~~~ 229 (243)
T cd00377 214 ELA-ELGVRRVSYGLAL 229 (243)
T ss_pred HHH-HCCCeEEEEChHH
Confidence 343 6799999988643
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00083 Score=69.08 Aligned_cols=106 Identities=24% Similarity=0.317 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC----CCHHHHHHHHhhC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL----ASWEHITAVRKAL 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~----~~~~~i~~i~~~~ 331 (487)
.+...+.++.+++..++||+++++.. +.++..++++.++++|+|+|.+|---........|. ..++.++.+++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~-~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGS-SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccC-CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence 45555566667667789999999543 456778999999999999999953210110011121 1357888999999
Q ss_pred CCcEEEc--CCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 332 TIPVIAN--GNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 332 ~iPVi~n--GgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++||++. +++.+..++.+.+++.|+|+|.+.
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 9999965 566667788888878999999764
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00045 Score=64.58 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCcEEEEEccccCCC-CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQR-GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.+..+.+.|+|.|.+........ ..+..+..++.++++++..++||++.|||+ .+++.+++ ..|+|+|.+|++++.
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~-~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVL-AAGADGVAVISAITG 183 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHH-HcCCCEEEEehHhhc
Confidence 334556678999999843322111 112134568999999888899999999995 78999998 689999999999886
Q ss_pred Ccc
Q psy7343 368 NPA 370 (487)
Q Consensus 368 ~P~ 370 (487)
+++
T Consensus 184 ~~~ 186 (196)
T cd00564 184 ADD 186 (196)
T ss_pred CCC
Confidence 543
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0011 Score=63.39 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=92.2
Q ss_pred Ceeeeecc-CCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 205 PLIIQFCG-NDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 205 Pv~Vqi~g-~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+-.+..| .+.++.+..|+++.+. .+.|. +-+.+. --.|+.|+-...+-.+.+.+. ++-|.--
T Consensus 71 ~~LPNTaGc~taeEAv~tArlARE~~~t~wiK--------lEVi~d-~~tLlPD~~etl~Aae~Lv~e-GF~VlPY---- 136 (262)
T COG2022 71 TLLPNTAGCRTAEEAVRTARLAREALGTNWIK--------LEVIGD-EKTLLPDPIETLKAAEQLVKE-GFVVLPY---- 136 (262)
T ss_pred EeCCCccccCCHHHHHHHHHHHHHHccCCeEE--------EEEecC-CcccCCChHHHHHHHHHHHhC-CCEEeec----
Confidence 33344444 5778888888888776 23332 223222 123444554443333333222 3333322
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
..+-.-+++++++.||..||=-|- .. |.-.|..+...++-+.+..++|||..-||-++.|+...+ +.|||+|++
T Consensus 137 --~~dD~v~arrLee~GcaavMPl~a-PI--GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aM-ElG~DaVL~ 210 (262)
T COG2022 137 --TTDDPVLARRLEEAGCAAVMPLGA-PI--GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAM-ELGADAVLL 210 (262)
T ss_pred --cCCCHHHHHHHHhcCceEeccccc-cc--cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHH-hcccceeeh
Confidence 223356789999999999996322 11 123466778889999999999999999999999999999 799999999
Q ss_pred ccccc
Q psy7343 362 AEGNL 366 (487)
Q Consensus 362 GRa~l 366 (487)
-++.-
T Consensus 211 NTAiA 215 (262)
T COG2022 211 NTAIA 215 (262)
T ss_pred hhHhh
Confidence 88754
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0023 Score=60.44 Aligned_cols=87 Identities=15% Similarity=0.196 Sum_probs=62.2
Q ss_pred HHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcC
Q psy7343 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANG 339 (487)
Q Consensus 261 eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nG 339 (487)
++++..+ ..+.++++- ..+..++ ....+.|+|.|.+... .....+.++.+++.. ++|+++.|
T Consensus 88 ~~~~~~~-~~~~~~i~g------v~t~~e~-~~A~~~Gad~i~~~p~---------~~~g~~~~~~l~~~~~~~p~~a~G 150 (190)
T cd00452 88 EVVKAAN-RAGIPLLPG------VATPTEI-MQALELGADIVKLFPA---------EAVGPAYIKALKGPFPQVRFMPTG 150 (190)
T ss_pred HHHHHHH-HcCCcEECC------cCCHHHH-HHHHHCCCCEEEEcCC---------cccCHHHHHHHHhhCCCCeEEEeC
Confidence 3444333 246666553 3355554 4456789999998321 112357788888777 69999999
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 340 NIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 340 gI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
|| +.+++.+++ +.|+++|.++..+.
T Consensus 151 GI-~~~n~~~~~-~~G~~~v~v~s~i~ 175 (190)
T cd00452 151 GV-SLDNAAEWL-AAGVVAVGGGSLLP 175 (190)
T ss_pred CC-CHHHHHHHH-HCCCEEEEEchhcc
Confidence 99 899999999 78999999999887
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0031 Score=63.77 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=88.4
Q ss_pred eeeecc-CCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 207 IIQFCG-NDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 207 ~Vqi~g-~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
-.+..| .+.++....|+++.+. -+.| ++-+.+. .-.++.|.....+-.+.+.+. ++-+..-.
T Consensus 140 lpNTag~~ta~eAv~~a~lare~~~~~~i--------KlEvi~e-~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc----- 204 (326)
T PRK11840 140 LPNTAGCYTAEEAVRTLRLAREAGGWDLV--------KLEVLGD-AKTLYPDMVETLKATEILVKE-GFQVMVYC----- 204 (326)
T ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCeE--------EEEEcCC-CCCcccCHHHHHHHHHHHHHC-CCEEEEEe-----
Confidence 334443 5677788888877765 1222 2333332 123344554443333332211 33331211
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+....++.+++.|+..||--+- .- |.-.|..+.+.++.+.+..++||+..+||.+++|+.+.+ +.|||+|.+.+
T Consensus 205 -~~d~~~a~~l~~~g~~avmPl~~-pI--Gsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Am-elGadgVL~nS 279 (326)
T PRK11840 205 -SDDPIAAKRLEDAGAVAVMPLGA-PI--GSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAM-ELGCDGVLMNT 279 (326)
T ss_pred -CCCHHHHHHHHhcCCEEEeeccc-cc--cCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHH-HcCCCEEEEcc
Confidence 13466788899999977775111 11 112234478899999999999999999999999999999 79999999999
Q ss_pred cccc
Q psy7343 364 GNLY 367 (487)
Q Consensus 364 a~l~ 367 (487)
|...
T Consensus 280 aIa~ 283 (326)
T PRK11840 280 AIAE 283 (326)
T ss_pred eecc
Confidence 9863
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0028 Score=67.53 Aligned_cols=102 Identities=20% Similarity=0.282 Sum_probs=72.6
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN 338 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n 338 (487)
+.++++.+++ .++++.+.. .+..+..+.++.+.+.|+|.|.++.-...+. .+...++.++++++.+++||++.
T Consensus 96 ~~~~i~~a~~-~G~~~~~g~---~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~---~~~~~~~~l~~l~~~~~iPI~a~ 168 (430)
T PRK07028 96 IEDAVRAARK-YGVRLMADL---INVPDPVKRAVELEELGVDYINVHVGIDQQM---LGKDPLELLKEVSEEVSIPIAVA 168 (430)
T ss_pred HHHHHHHHHH-cCCEEEEEe---cCCCCHHHHHHHHHhcCCCEEEEEeccchhh---cCCChHHHHHHHHhhCCCcEEEE
Confidence 4556666665 477766531 1333445666777889999998853211111 12334688999998889999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 339 GNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 339 GgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
||| +.+.+.+++ ..|+|++.+|++++..+
T Consensus 169 GGI-~~~n~~~~l-~aGAdgv~vGsaI~~~~ 197 (430)
T PRK07028 169 GGL-DAETAAKAV-AAGADIVIVGGNIIKSA 197 (430)
T ss_pred CCC-CHHHHHHHH-HcCCCEEEEChHHcCCC
Confidence 999 688899998 78999999999988754
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00095 Score=65.97 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=70.0
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~ 328 (487)
|-...++++.+.+ |++.+++||++++|.+. ..-++.+.++|+|.|.-+.| .+ +..+.+..+|
T Consensus 47 ~v~R~~~~~~I~~----Ik~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvDiIDaT~r---~r------P~~~~~~~iK 108 (283)
T cd04727 47 GVARMADPKMIKE----IMDAVSIPVMAKVRIGH-----FVEAQILEALGVDMIDESEV---LT------PADEEHHIDK 108 (283)
T ss_pred CeeecCCHHHHHH----HHHhCCCCeEEeeehhH-----HHHHHHHHHcCCCEEeccCC---CC------cHHHHHHHHH
Confidence 4455677777666 56678999999987653 67788999999999954333 11 1357888888
Q ss_pred hhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 329 ~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
...+.|+++ |+.|.+++.+.. +.|+|.|.
T Consensus 109 ~~~~~l~MA--D~stleEal~a~-~~Gad~I~ 137 (283)
T cd04727 109 HKFKVPFVC--GARNLGEALRRI-SEGAAMIR 137 (283)
T ss_pred HHcCCcEEc--cCCCHHHHHHHH-HCCCCEEE
Confidence 888888887 999999999999 78999764
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0025 Score=60.88 Aligned_cols=124 Identities=22% Similarity=0.337 Sum_probs=79.4
Q ss_pred HHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecc-cccccHHHHHHHHHHc
Q psy7343 220 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIY-QDVNKTVEYARMLERA 297 (487)
Q Consensus 220 ~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~-~d~~~~~e~a~~le~~ 297 (487)
++.+.++..+|+||+.+-. |.....+++.+.+-+.++++.. ++|+.+-+-.+ .+.+.....++...+.
T Consensus 74 eve~A~~~GAdevdvv~~~----------g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~ 143 (203)
T cd00959 74 EAREAIADGADEIDMVINI----------GALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEA 143 (203)
T ss_pred HHHHHHHcCCCEEEEeecH----------HHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3444445558888865332 2222246776666677777765 35544321111 1234567778889999
Q ss_pred CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 298 GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 298 G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
|+|.|-.. | |+..+.+..+.++.+++.+ ++||.++|||+|.+++.+++ ..||+.+.
T Consensus 144 GaD~IKTs--T----G~~~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~-~~g~~riG 201 (203)
T cd00959 144 GADFIKTS--T----GFGPGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMI-EAGATRIG 201 (203)
T ss_pred CCCEEEcC--C----CCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-HhChhhcc
Confidence 99999872 1 1122446666666665554 69999999999999999999 67888654
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0056 Score=58.74 Aligned_cols=138 Identities=13% Similarity=0.196 Sum_probs=76.9
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
.++.+-+..++++.+.+.+. +..+|+|-+|.+- + +...+.++.+++ .++.+.+-+ +
T Consensus 62 ~~~~v~l~v~d~~~~i~~~~--~~g~d~v~vh~~~----------------~-~~~~~~~~~~~~-~~~~~g~~~----~ 117 (220)
T PRK05581 62 LPLDVHLMVENPDRYVPDFA--KAGADIITFHVEA----------------S-EHIHRLLQLIKS-AGIKAGLVL----N 117 (220)
T ss_pred CcEEEEeeeCCHHHHHHHHH--HcCCCEEEEeecc----------------c-hhHHHHHHHHHH-cCCEEEEEE----C
Confidence 46667778888877765553 2224554444321 1 222334444443 245444433 2
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH---HHHHHHHhhCC-----CcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW---EHITAVRKALT-----IPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~---~~i~~i~~~~~-----iPVi~nGgI~s~~da~~~l~~~G 355 (487)
..+..+..+.+. .++|+|.+-+......+ ...++ +.++++++..+ .+|...|||+. +++.+++ +.|
T Consensus 118 ~~t~~e~~~~~~-~~~d~i~~~~~~~g~tg---~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~-~~G 191 (220)
T PRK05581 118 PATPLEPLEDVL-DLLDLVLLMSVNPGFGG---QKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECA-EAG 191 (220)
T ss_pred CCCCHHHHHHHH-hhCCEEEEEEECCCCCc---ccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHH-HcC
Confidence 223344444442 34788776332111111 11223 44555554432 33557799988 8999988 689
Q ss_pred CcEEEeccccccCccc
Q psy7343 356 VAGVMTAEGNLYNPAL 371 (487)
Q Consensus 356 ad~VmiGRa~l~~P~l 371 (487)
+|+|.+|++++.+++.
T Consensus 192 aD~vvvgSai~~~~d~ 207 (220)
T PRK05581 192 ADVFVAGSAVFGAPDY 207 (220)
T ss_pred CCEEEEChhhhCCCCH
Confidence 9999999999977654
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00034 Score=68.00 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=55.6
Q ss_pred cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCC-cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTI-PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~i-PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.|...+-+-.. +....+.+.+.++++++.+++ |+++.|||++.+++++++ ..|||+|.+|+++..||.
T Consensus 153 ~g~~~vYle~g-----s~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l-~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 153 LGMPIVYLEYG-----GGAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELM-AAGADTIVVGNIIEEDPK 221 (232)
T ss_pred cCCCeEEEECC-----CCCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHH-HhCCCEEEEChHHhhCHH
Confidence 46665555221 113445678999999999998 999999999999999988 689999999999999987
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00076 Score=69.99 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=70.0
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeecc-----------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCc
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFCG-----------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY 248 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g-----------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~ 248 (487)
.|.+......++++ ....+.||+++|.+ .++++..++++.+++. .|.|++..|- .. ...+
T Consensus 189 slenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~-~~---~~~~ 264 (361)
T cd04747 189 SLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRR-FW---EPEF 264 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCC-cc---CCCc
Confidence 33333444445553 34456799999863 3456777788888776 7888886651 00 0001
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecc--------------cccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--------------QDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~--------------~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.+ .+++ +.+.+++.+++||++.+++. .+..+..+..+.+++.++|.|++ ||.
T Consensus 265 ~~---~~~~----~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~-gR~ 330 (361)
T cd04747 265 EG---SELN----LAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAV-GRA 330 (361)
T ss_pred Cc---cchh----HHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehh-hHH
Confidence 00 1233 33456777899999998762 12346677777787788999999 885
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=67.88 Aligned_cols=121 Identities=16% Similarity=0.187 Sum_probs=78.7
Q ss_pred chhhhcChhHHHHHHhc--CC-C----CCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCcce-ee----ccCc
Q psy7343 183 AHQFIADKKLRQEILMS--TP-E----DRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMV-AK----RGHY 248 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~~--~~-~----~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i-~~----~gr~ 248 (487)
+....++++...++++. .. . +.||+|||.. .+.+++.++++.++++ .|+|.++-+-+... .. ....
T Consensus 184 g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~ 263 (344)
T PRK05286 184 GLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEA 263 (344)
T ss_pred CcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCC
Confidence 33446677777777642 11 1 3899999994 4456788899988876 89998876542210 00 0011
Q ss_pred cc-cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 249 GA-YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 249 G~-~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
|+ ..........+.++.+++.+ ++||++.+ ++.+.+++.+.+. +|||.|+| +|..
T Consensus 264 gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~G----GI~s~eda~e~l~-aGAd~V~v-~~~~ 321 (344)
T PRK05286 264 GGLSGRPLFERSTEVIRRLYKELGGRLPIIGVG----GIDSAEDAYEKIR-AGASLVQI-YSGL 321 (344)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCCCCEEEEC----CCCCHHHHHHHHH-cCCCHHHH-HHHH
Confidence 11 11111223445666677777 79999997 8889999999997 99999999 7753
|
|
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0017 Score=63.86 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=80.4
Q ss_pred HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc---ccc-cHHHHHH
Q psy7343 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ---DVN-KTVEYAR 292 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~---d~~-~~~e~a~ 292 (487)
...++...++..+|.||+=+.. |..+..+++.+.+-++++++.++-++.+|+-+.. +.+ ....+++
T Consensus 85 K~~Ea~~Ai~~GAdEiD~Vini----------g~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~ 154 (257)
T PRK05283 85 ALAETRAAIAYGADEVDVVFPY----------RALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASE 154 (257)
T ss_pred HHHHHHHHHHcCCCEEeeeccH----------HHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHH
Confidence 4456666777778888853221 2222347898888888888765423455544421 223 3667888
Q ss_pred HHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-------CCcEEEcCCCCCHHHHHHHHH
Q psy7343 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-------TIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 293 ~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-------~iPVi~nGgI~s~~da~~~l~ 352 (487)
.+.++|+|+|--+ .|+..+.+..+.++.+++.+ ++-|-++|||+|.+++.++++
T Consensus 155 ~a~~aGADFVKTS------TGf~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ 215 (257)
T PRK05283 155 IAIKAGADFIKTS------TGKVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLA 215 (257)
T ss_pred HHHHhCCCEEEcC------CCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHH
Confidence 9999999999541 12233457777777776664 477899999999999999994
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0012 Score=63.03 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCC-CCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQ-RGMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~-~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
+..+ +....+.|+|.|.++.-.... .+.+.....++.++++++..+ +||++.||| +.+++.+++ ..|+|+|.+|+
T Consensus 113 t~~e-~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~-~~Ga~gv~~gs 189 (212)
T PRK00043 113 TLEE-AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVL-EAGADGVAVVS 189 (212)
T ss_pred CHHH-HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH-HcCCCEEEEeH
Confidence 4344 445557899999984321111 111222224889999998887 999999999 689999999 79999999999
Q ss_pred ccccCcc
Q psy7343 364 GNLYNPA 370 (487)
Q Consensus 364 a~l~~P~ 370 (487)
+++.+++
T Consensus 190 ~i~~~~d 196 (212)
T PRK00043 190 AITGAED 196 (212)
T ss_pred HhhcCCC
Confidence 9876543
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0058 Score=59.12 Aligned_cols=136 Identities=10% Similarity=0.167 Sum_probs=86.3
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.|+-|-+.-.+|+.+.+.... + |+ ..++.|-.. .+.+.++++.+|+. ++...+-+
T Consensus 58 ~~~~dvHLMv~~p~~~i~~~~~---~--------ga-d~i~~H~Ea-------~~~~~~~l~~ik~~-g~k~Glal---- 113 (220)
T PRK08883 58 TAPIDVHLMVKPVDRIIPDFAK---A--------GA-SMITFHVEA-------SEHVDRTLQLIKEH-GCQAGVVL---- 113 (220)
T ss_pred CCCEEEEeccCCHHHHHHHHHH---h--------CC-CEEEEcccC-------cccHHHHHHHHHHc-CCcEEEEe----
Confidence 5788899988899887754332 2 32 345555431 12345566667654 66555555
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC----CCHHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHh
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL----ASWEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~----~~~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~ 353 (487)
+..+..+..+.+.+ -+|.|++-+-.. ++.|. ...+.++++++.. ++||.+-|||+ .+.+.++. +
T Consensus 114 nP~Tp~~~i~~~l~-~~D~vlvMtV~P----GfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~-~ 186 (220)
T PRK08883 114 NPATPLHHLEYIMD-KVDLILLMSVNP----GFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIA-E 186 (220)
T ss_pred CCCCCHHHHHHHHH-hCCeEEEEEecC----CCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHH-H
Confidence 33344444443332 278888743321 13332 2346777777665 48999999998 88999988 7
Q ss_pred cCCcEEEeccccccCc
Q psy7343 354 TGVAGVMTAEGNLYNP 369 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P 369 (487)
.|||++.+|++++..+
T Consensus 187 aGAd~vVvGSaIf~~~ 202 (220)
T PRK08883 187 AGADMFVAGSAIFGQP 202 (220)
T ss_pred cCCCEEEEeHHHhCCC
Confidence 9999999999976543
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00082 Score=65.08 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=68.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh-cCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ-TGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~-~Gad~VmiGR 363 (487)
.++.+.++.+.+.|+|.+.|--=... .....+.+.++++.+.+ |+...|||+|.+|+++++.. .+|+.|.+|+
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~----~~~~~n~~~i~~i~~~~--~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRI----VGLGDNFSLLSKLSKRV--ELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEcccc----cCCcchHHHHHHHHhhC--cEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 47899999999999999988322111 12345789999998874 99999999999999999642 3699999999
Q ss_pred ccccCcccccCC
Q psy7343 364 GNLYNPALFTGQ 375 (487)
Q Consensus 364 a~l~~P~lf~~~ 375 (487)
..+.||.++.+.
T Consensus 110 ~a~~~p~~l~~~ 121 (221)
T TIGR00734 110 ETLDITELLREC 121 (221)
T ss_pred hhhCCHHHHHHh
Confidence 999999987654
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0058 Score=61.32 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC--CCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG--NIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG--gI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+..++.+..+++|+|++.+.-.+.-.........+++.++++++.+++|+++-| ||. .+++.+++ +.|+++|-+.
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~-~e~~~~~i-~~G~~kinv~ 230 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS-PEDFKKCI-QHGIRKINVA 230 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHH-HcCCcEEEEh
Confidence 3566766667789999998821211111011223578999999999999999999 885 67788888 7999999999
Q ss_pred cccccC
Q psy7343 363 EGNLYN 368 (487)
Q Consensus 363 Ra~l~~ 368 (487)
+++..+
T Consensus 231 T~i~~a 236 (281)
T PRK06806 231 TATFNS 236 (281)
T ss_pred HHHHHH
Confidence 988774
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0036 Score=59.06 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=59.8
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccC--CCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVD--QRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~--~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+..+..+..+ +.+.|+|.|.+ |.... .++.......++.++++++.. ++||++.||| +.+++.+++ .+|+++|
T Consensus 102 s~h~~~e~~~-a~~~g~dyi~~-~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~-~~G~~gv 177 (196)
T TIGR00693 102 STHNLEELAE-AEAEGADYIGF-GPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVL-AAGADGV 177 (196)
T ss_pred eCCCHHHHHH-HhHcCCCEEEE-CCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH-HcCCCEE
Confidence 4445666554 66789999998 43211 111122234688899888765 5999999999 589999998 7899999
Q ss_pred EeccccccCc
Q psy7343 360 MTAEGNLYNP 369 (487)
Q Consensus 360 miGRa~l~~P 369 (487)
.+|++++...
T Consensus 178 a~~~~i~~~~ 187 (196)
T TIGR00693 178 AVVSAIMQAA 187 (196)
T ss_pred EEhHHhhCCC
Confidence 9999988543
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0029 Score=61.23 Aligned_cols=77 Identities=14% Similarity=0.051 Sum_probs=57.6
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+...++.|+|+|.+ |-..........+...+.++++++.+++||++-||| +.+++.+++ ++|+++|.+-++++..++
T Consensus 124 a~~A~~~gaDYv~~-Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~-~~GA~giAvisai~~~~d 200 (221)
T PRK06512 124 AMEIGELRPDYLFF-GKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVA-ETGAEFVALERAVFDAHD 200 (221)
T ss_pred HHHhhhcCCCEEEE-CCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHH-HhCCCEEEEhHHhhCCCC
Confidence 34456789999999 532211101122334678888888899999999999 789999999 799999999999986543
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0056 Score=58.63 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+..| +....+.|+|.|.+.. .....++.++.+++.+ ++|+++.||| +.+++.+++ +.|+++|.++
T Consensus 112 ~t~~E-~~~A~~~Gad~vk~Fp---------a~~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~-~aGa~~vav~ 179 (206)
T PRK09140 112 ATPTE-AFAALRAGAQALKLFP---------ASQLGPAGIKALRAVLPPDVPVFAVGGV-TPENLAPYL-AAGAAGFGLG 179 (206)
T ss_pred CCHHH-HHHHHHcCCCEEEECC---------CCCCCHHHHHHHHhhcCCCCeEEEECCC-CHHHHHHHH-HCCCeEEEEe
Confidence 34545 4555678999998722 1223478899999887 4999999999 789999999 7899999999
Q ss_pred cccccC
Q psy7343 363 EGNLYN 368 (487)
Q Consensus 363 Ra~l~~ 368 (487)
++++..
T Consensus 180 s~l~~~ 185 (206)
T PRK09140 180 SALYRP 185 (206)
T ss_pred hHhccc
Confidence 998764
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0075 Score=62.49 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=76.2
Q ss_pred cCChHHHHHHHHHHhhhc-cCcEEEEeecccc-cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH----HHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQD-VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW----EHITA 326 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d-~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~ 326 (487)
..+++ +.+-++.+++.. +.||++|+-.... ..+..++.+.++..++|++.+|--.........+..++ +.+++
T Consensus 102 ~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~ 180 (352)
T PRK05437 102 LKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAE 180 (352)
T ss_pred ccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHH
Confidence 45677 666667777766 8999999855322 22457778888888999999975321111112333345 67888
Q ss_pred HHhhCCCcEEE--cCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 327 VRKALTIPVIA--NGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 327 i~~~~~iPVi~--nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+++.+++||+. +|.-.+.++++.+. +.|+|+|.++
T Consensus 181 i~~~~~vPVivK~~g~g~s~~~a~~l~-~~Gvd~I~Vs 217 (352)
T PRK05437 181 IVSALPVPVIVKEVGFGISKETAKRLA-DAGVKAIDVA 217 (352)
T ss_pred HHHhhCCCEEEEeCCCCCcHHHHHHHH-HcCCCEEEEC
Confidence 89989999996 66667888887777 7899999984
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.004 Score=59.68 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCcEEEEEccccCC-CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 287 TVEYARMLERAGCQLLAVHGRTVDQ-RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 287 ~~e~a~~le~~G~d~I~VhgRt~~~-~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
..+.+...++.|+|+|.+ |..... ......+.-++.++.+++...+|+++-|||+ .+.+.+++ ++|+++|.+-|++
T Consensus 113 ~~eea~~A~~~g~DYv~~-GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~-~~nv~~v~-~~Ga~gVAvvsai 189 (211)
T COG0352 113 DLEEALEAEELGADYVGL-GPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGIN-LENVPEVL-EAGADGVAVVSAI 189 (211)
T ss_pred CHHHHHHHHhcCCCEEEE-CCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHH-HhCCCeEEehhHh
Confidence 345556677788999999 753221 1001134568999999999999999999995 78899999 7999999999999
Q ss_pred ccCccc
Q psy7343 366 LYNPAL 371 (487)
Q Consensus 366 l~~P~l 371 (487)
+..++.
T Consensus 190 ~~a~d~ 195 (211)
T COG0352 190 TSAADP 195 (211)
T ss_pred hcCCCH
Confidence 887655
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.029 Score=54.05 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=96.3
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
....||.+++.-||+.....+|.... .+.|-+|.=+=...+-.| .+.-+-..+.+....+. .++.+.+.+..
T Consensus 83 ~v~iPvGvNVLrNd~vaA~~IA~a~g--A~FIRVN~~tg~~~tdqG----iieg~A~e~~r~r~~L~--~~v~vlADv~V 154 (263)
T COG0434 83 EVSIPVGVNVLRNDAVAALAIAYAVG--ADFIRVNVLTGAYATDQG----IIEGNAAELARYRARLG--SRVKVLADVHV 154 (263)
T ss_pred hccccceeeeeccccHHHHHHHHhcC--CCEEEEEeeeceEecccc----eecchHHHHHHHHHhcc--CCcEEEeecch
Confidence 34689999988777665555554332 455555532211222211 12222333334333333 24556655433
Q ss_pred ----ccccccHHHHHHH-HHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 281 ----YQDVNKTVEYARM-LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 281 ----~~d~~~~~e~a~~-le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
.-...+..+.++- ++..++|+|+++|.+. ..+++.+.++.+++..+.||+++.|+ +++.+.++++ .
T Consensus 155 KHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~T------G~~~d~~el~~a~~~~~~pvlvGSGv-~~eN~~~~l~-~- 225 (263)
T COG0434 155 KHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRT------GSPPDLEELKLAKEAVDTPVLVGSGV-NPENIEELLK-I- 225 (263)
T ss_pred hcccccCCcCHHHHHHHHHHccCCCEEEEecccC------CCCCCHHHHHHHHhccCCCEEEecCC-CHHHHHHHHH-H-
Confidence 1122355666655 7778899999988642 24578999999999999999998777 5888999984 3
Q ss_pred CcEEEeccccccCccc
Q psy7343 356 VAGVMTAEGNLYNPAL 371 (487)
Q Consensus 356 ad~VmiGRa~l~~P~l 371 (487)
|||+++|+.+=.+--+
T Consensus 226 adG~IvgT~lK~~G~~ 241 (263)
T COG0434 226 ADGVIVGTSLKKGGVT 241 (263)
T ss_pred cCceEEEEEEccCCEe
Confidence 9999999976666433
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.001 Score=64.99 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=89.7
Q ss_pred CCCeeeeec-cC-C-HHH-----HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh---cc
Q psy7343 203 DRPLIIQFC-GN-D-SKN-----LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA---VQ 271 (487)
Q Consensus 203 ~~Pv~Vqi~-g~-d-~~~-----~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~---~~ 271 (487)
..++++.+- |. . ... ..++.+.++...|+|++-+-. +.....+++...+.+..+++. .+
T Consensus 56 ~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~----------~~~~~~~~~~~~~~i~~v~~~~~~~g 125 (236)
T PF01791_consen 56 KVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINY----------GALGSGNEDEVIEEIAAVVEECHKYG 125 (236)
T ss_dssp EEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEH----------HHHHTTHHHHHHHHHHHHHHHHHTSE
T ss_pred ccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccc----------cccccccHHHHHHHHHHHHHHHhcCC
Confidence 455666654 32 2 233 445555566667888753211 111112355555555555444 37
Q ss_pred CcEEEEeeccccc-------ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc----EEEcCC
Q psy7343 272 VPVSCKIRIYQDV-------NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP----VIANGN 340 (487)
Q Consensus 272 iPV~vKiR~~~d~-------~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP----Vi~nGg 340 (487)
+||++-.-+.... +.....++.+.+.|+|.|-..-. .. . .....+.+.++++.+...+| |.++||
T Consensus 126 l~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg-~~-~--~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGG 201 (236)
T PF01791_consen 126 LKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG-KP-V--GATPEDVELMRKAVEAAPVPGKVGVKASGG 201 (236)
T ss_dssp EEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S-SS-S--CSHHHHHHHHHHHHHTHSSTTTSEEEEESS
T ss_pred cEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC-cc-c--cccHHHHHHHHHHHHhcCCCcceEEEEeCC
Confidence 8998873222111 13577888889999999987321 11 1 11112345566666666889 999999
Q ss_pred C------CCHHHHHHHHHhcCC--cEEEecccccc
Q psy7343 341 I------QCLADVEACLAQTGV--AGVMTAEGNLY 367 (487)
Q Consensus 341 I------~s~~da~~~l~~~Ga--d~VmiGRa~l~ 367 (487)
| ++.+++.+++ +.|| -|+..||.++.
T Consensus 202 i~~~~~~~~l~~a~~~i-~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 202 IDAEDFLRTLEDALEFI-EAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp SSHHHHHHSHHHHHHHH-HTTHSEEEEEEHHHHHT
T ss_pred CChHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHc
Confidence 9 9999999999 7899 99999997653
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0049 Score=63.21 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC----CHHHHHHHHhhCC
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA----SWEHITAVRKALT 332 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~----~~~~i~~i~~~~~ 332 (487)
+...+.+...++..+.||++++ .+.+.+++.++++.++++|+|+|.++--.....+...|.. ..+.++.+++.++
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si-~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~ 163 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASL-NGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT 163 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEe-CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC
Confidence 3333334344445578999987 2335567889999999999999999653211111122211 2477888888889
Q ss_pred CcEEE--cCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 333 IPVIA--NGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 333 iPVi~--nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
+||++ ++++.+..++.+.+++.|+|++.+.-
T Consensus 164 iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 164 IPVAVKLSPFFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEc
Confidence 99985 56667777888878789999998743
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.012 Score=57.25 Aligned_cols=148 Identities=16% Similarity=0.261 Sum_probs=92.8
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQD 283 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d 283 (487)
+++.|...|+..+.+-.+.+++. .|.+.+..- .|.+--.+.-.+ ++++++++.. ++|+.+++ -
T Consensus 9 i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~Dim-------Dg~fvpn~~~G~----~~v~~lr~~~~~~~lDvHL----m 73 (228)
T PTZ00170 9 IAPSILAADFSKLADEAQDVLSGGADWLHVDVM-------DGHFVPNLSFGP----PVVKSLRKHLPNTFLDCHL----M 73 (228)
T ss_pred EehhHhhcCHHHHHHHHHHHHHcCCCEEEEecc-------cCccCCCcCcCH----HHHHHHHhcCCCCCEEEEE----C
Confidence 34445566888888888877775 555444321 111111111123 3455577666 78898887 4
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCC-----------C-----------------------------------CCCCC
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQ-----------R-----------------------------------GMNTG 317 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~-----------~-----------------------------------g~~~g 317 (487)
..+...+++.+.++|+|.|+||+.+... . +++.|
T Consensus 74 ~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~g 153 (228)
T PTZ00170 74 VSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGG 153 (228)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCCC
Confidence 6678888899999999999999753110 0 01111
Q ss_pred CCC----HHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 318 LAS----WEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 318 ~~~----~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
... .+.++++++.. ...|...|||+ .+.+..+. +.|+|.+++||++...++
T Consensus 154 q~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~-~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 154 QSFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAA-DAGANVIVAGSSIFKAKD 209 (228)
T ss_pred cEecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHH-HcCCCEEEEchHHhCCCC
Confidence 111 24455555544 46788899997 46787877 789999999998766544
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.16 Score=48.71 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=99.2
Q ss_pred cCCCchHHHHHHHHhCCccceecccc--chhhhcChhHHHHHHhcCCCC-CCeeeeeccCCHHHHHHHHHhhCCc-CcEE
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVS--AHQFIADKKLRQEILMSTPED-RPLIIQFCGNDSKNLTEAAKLAEPH-CDGI 232 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~--~~~Ll~~~~~~~~~l~~~~~~-~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~I 232 (487)
.|+++..-...+.++|++.+. +|. .+.=.-+++...++.+..+.. .+|.| +...+++...++++ +. .|.|
T Consensus 8 CGi~~~eda~~~~~~Gad~iG--fI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgV-f~~~~~~~i~~~~~---~~~~d~v 81 (210)
T PRK01222 8 CGITTPEDAEAAAELGADAIG--FVFYPKSPRYVSPEQAAELAAALPPFVKVVGV-FVNASDEEIDEIVE---TVPLDLL 81 (210)
T ss_pred CCCCcHHHHHHHHHcCCCEEE--EccCCCCCCcCCHHHHHHHHHhCCCCCCEEEE-EeCCCHHHHHHHHH---hcCCCEE
Confidence 456665545677788886542 221 111112333445555433322 23332 22446666655544 44 5666
Q ss_pred EeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHH-cCCcEEEEEccccCC
Q psy7343 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER-AGCQLLAVHGRTVDQ 311 (487)
Q Consensus 233 diN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~-~G~d~I~VhgRt~~~ 311 (487)
+||... +++.+ +.+++..+++++-.+++... .++....+. ..+|++.+..... .
T Consensus 82 QLHg~e----------------~~~~~----~~l~~~~~~~iik~i~v~~~----~~l~~~~~~~~~~d~~L~Ds~~~-~ 136 (210)
T PRK01222 82 QLHGDE----------------TPEFC----RQLKRRYGLPVIKALRVRSA----GDLEAAAAYYGDADGLLLDAYVG-L 136 (210)
T ss_pred EECCCC----------------CHHHH----HHHHhhcCCcEEEEEecCCH----HHHHHHHhhhccCCEEEEcCCCC-C
Confidence 665322 33433 34555557787766655321 122222222 3589999965543 2
Q ss_pred CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 312 ~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.|+..-..+|+.+. +.++.|++.+|||+ ++.+.++++..+..||-+.+|.-..|.
T Consensus 137 ~GGtG~~~dw~~l~---~~~~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 137 PGGTGKTFDWSLLP---AGLAKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVESAPG 191 (210)
T ss_pred CCCCCCccchHHhh---hccCCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceECCCC
Confidence 23222234788762 12367999999995 788988886668999999998876664
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.11 Score=49.83 Aligned_cols=181 Identities=16% Similarity=0.250 Sum_probs=105.1
Q ss_pred cCCCchHHHHHHHHhCCccceeccccch--hhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEE
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAH--QFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGID 233 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~--~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~Id 233 (487)
+|+|...=...+...|++.. .+|... .=.-+++.++++.+..+. .+ .|=++ ..+.+++.+++.... .|.|+
T Consensus 7 CGlt~~eda~~a~~~gad~i--G~If~~~SpR~Vs~~~a~~i~~~v~~-~~-~VgVf~n~~~~~i~~i~~~~~--ld~VQ 80 (208)
T COG0135 7 CGLTRLEDAKAAAKAGADYI--GFIFVPKSPRYVSPEQAREIASAVPK-VK-VVGVFVNESIEEILEIAEELG--LDAVQ 80 (208)
T ss_pred CCCCCHHHHHHHHHcCCCEE--EEEEcCCCCCcCCHHHHHHHHHhCCC-CC-EEEEECCCCHHHHHHHHHhcC--CCEEE
Confidence 35554433345556676432 222211 111133445555554332 22 22233 445555555444332 44444
Q ss_pred eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC
Q psy7343 234 INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313 (487)
Q Consensus 234 iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g 313 (487)
| ||. .+++.+.+ +++..++||+--+++....+ .........-+|.+++......+.|
T Consensus 81 l----------HG~------e~~~~~~~----l~~~~~~~v~kai~v~~~~~---~~~~~~~~~~~d~~LlDa~~~~~~G 137 (208)
T COG0135 81 L----------HGD------EDPEYIDQ----LKEELGVPVIKAISVSEEGD---LELAAREEGPVDAILLDAKVPGLPG 137 (208)
T ss_pred E----------CCC------CCHHHHHH----HHhhcCCceEEEEEeCCccc---hhhhhhccCCccEEEEcCCCCCCCC
Confidence 4 443 46676665 45455788887776543222 2233344556999999655544444
Q ss_pred CCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCC-cEEEeccccccCcc
Q psy7343 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGV-AGVMTAEGNLYNPA 370 (487)
Q Consensus 314 ~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Ga-d~VmiGRa~l~~P~ 370 (487)
+..-.-||+.+... ....|++.+|||+ ++.+.++++ .++ .+|=+.+|.-.+|-
T Consensus 138 GtG~~fDW~~l~~~--~~~~~~~LAGGL~-p~NV~~ai~-~~~p~gvDvSSGVE~~pG 191 (208)
T COG0135 138 GTGQTFDWNLLPKL--RLSKPVMLAGGLN-PDNVAEAIA-LGPPYGVDVSSGVESSPG 191 (208)
T ss_pred CCCcEECHHHhccc--cccCCEEEECCCC-HHHHHHHHH-hcCCceEEeccccccCCC
Confidence 44445689888776 4678899999994 899999994 555 99999999999983
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.018 Score=57.93 Aligned_cols=153 Identities=13% Similarity=0.139 Sum_probs=92.3
Q ss_pred CCCCCeeeeec-cCCHHHHHHHHHhhCCc-CcEEEeecCC-CcceeeccCccccccCChHHHHHHHHHHhhh-ccCcEEE
Q psy7343 201 PEDRPLIIQFC-GNDSKNLTEAAKLAEPH-CDGIDINIGC-PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-VQVPVSC 276 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~-~d~IdiN~Gc-P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-~~iPV~v 276 (487)
....||++-+- |.++.++.+.++.+++. +.+|.|-=.. |....--+..+....-+.+...+.+++++++ .+.++.+
T Consensus 76 a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~I 155 (285)
T TIGR02320 76 VTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMI 155 (285)
T ss_pred hcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEE
Confidence 34689998876 56888888888877776 7777773221 1110001111122233556666666666655 4556666
Q ss_pred Eeec-----ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEcCCCCCHHH
Q psy7343 277 KIRI-----YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-----TIPVIANGNIQCLAD 346 (487)
Q Consensus 277 KiR~-----~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~d 346 (487)
+-|. ....++..+-++...++|+|.|.+++. ..+.+.+.++.+.+ ++|++.+.+-.-.-.
T Consensus 156 iARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~----------~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~ 225 (285)
T TIGR02320 156 IARVESLILGKGMEDALKRAEAYAEAGADGIMIHSR----------KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTP 225 (285)
T ss_pred EEecccccccCCHHHHHHHHHHHHHcCCCEEEecCC----------CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCC
Confidence 6662 224557777788889999999999531 12345566665555 468887653111113
Q ss_pred HHHHHHhcCCcEEEeccc
Q psy7343 347 VEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa 364 (487)
+.++- +.|++.|..|..
T Consensus 226 ~~eL~-~lG~~~v~~~~~ 242 (285)
T TIGR02320 226 TDEFR-DAGISVVIYANH 242 (285)
T ss_pred HHHHH-HcCCCEEEEhHH
Confidence 44554 689999988854
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0064 Score=62.69 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=60.4
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCC-CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQ-RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~-~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+..+..++ ..+.+.|+|+|.+..-.... ++.. .+..++.++.+++..++||++-|||. .+++.+++ ..|+++|.+
T Consensus 246 S~Hs~~e~-~~A~~~GaDYI~lGPvf~T~tKp~~-~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~-~~Ga~gVAv 321 (347)
T PRK02615 246 STTNPEEM-AKAIAEGADYIGVGPVFPTPTKPGK-APAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVL-QAGAKRVAV 321 (347)
T ss_pred ecCCHHHH-HHHHHcCCCEEEECCCcCCCCCCCC-CCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHH-HcCCcEEEE
Confidence 44455554 44556799999983221111 1111 24568999999999999999999995 88999888 799999999
Q ss_pred ccccccCc
Q psy7343 362 AEGNLYNP 369 (487)
Q Consensus 362 GRa~l~~P 369 (487)
+++++..+
T Consensus 322 isaI~~a~ 329 (347)
T PRK02615 322 VRAIMGAE 329 (347)
T ss_pred eHHHhCCC
Confidence 99998643
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.03 Score=53.41 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=85.7
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC-CHHHHHHHHhhCC
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA-SWEHITAVRKALT 332 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~-~~~~i~~i~~~~~ 332 (487)
.+...+...++..++ .++-+.+-+ .+..++.+.++.+++.|+|.+.+|-....|. .|.. .|+.+..+++..+
T Consensus 90 A~~~TI~~~i~~A~~-~~~~v~iDl---~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~---~G~~~~~~~l~~ik~~~~ 162 (217)
T COG0269 90 ADDATIKKAIKVAKE-YGKEVQIDL---IGVWDPEQRAKWLKELGVDQVILHRGRDAQA---AGKSWGEDDLEKIKKLSD 162 (217)
T ss_pred CCHHHHHHHHHHHHH-cCCeEEEEe---ecCCCHHHHHHHHHHhCCCEEEEEecccHhh---cCCCccHHHHHHHHHhhc
Confidence 466777777776554 466666654 3556789999999999999999984333332 2333 2678888888775
Q ss_pred --CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHH
Q psy7343 333 --IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVA 391 (487)
Q Consensus 333 --iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~ 391 (487)
..|-..|||. ++++..+. ..|++.|.+||++-...+- .+..+++.+.+.
T Consensus 163 ~g~~vAVaGGI~-~~~i~~~~-~~~~~ivIvGraIt~a~dp--------~~~a~~~~~~i~ 213 (217)
T COG0269 163 LGAKVAVAGGIT-PEDIPLFK-GIGADIVIVGRAITGAKDP--------AEAARKFKEEID 213 (217)
T ss_pred cCceEEEecCCC-HHHHHHHh-cCCCCEEEECchhcCCCCH--------HHHHHHHHHHHh
Confidence 7888999995 89999888 7899999999987654332 344555555443
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.006 Score=60.18 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=86.9
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.|+-.|=+--|+.+..++... ..|+|=|..+. -+.+.+.++++... .+++-+.+-+
T Consensus 109 ~~PvL~KDFIid~~QI~eA~~~---GADaVLLI~~~---------------L~~~~l~~l~~~a~-~lGle~lVEV---- 165 (254)
T PF00218_consen 109 DLPVLRKDFIIDPYQIYEARAA---GADAVLLIAAI---------------LSDDQLEELLELAH-SLGLEALVEV---- 165 (254)
T ss_dssp SS-EEEES---SHHHHHHHHHT---T-SEEEEEGGG---------------SGHHHHHHHHHHHH-HTT-EEEEEE----
T ss_pred CCCcccccCCCCHHHHHHHHHc---CCCEeehhHHh---------------CCHHHHHHHHHHHH-HcCCCeEEEE----
Confidence 5788877554466555544321 23444333222 13566677776544 4577777765
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
.+..|+ +...++|++.|.|-.|.-. +-..+.+...++...+ ++.+|+-+||.|.+|+.++. ..|+|+|.
T Consensus 166 --h~~~El-~~al~~~a~iiGINnRdL~-----tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~-~~G~davL 236 (254)
T PF00218_consen 166 --HNEEEL-ERALEAGADIIGINNRDLK-----TFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLA-RAGADAVL 236 (254)
T ss_dssp --SSHHHH-HHHHHTT-SEEEEESBCTT-----TCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHC-TTT-SEEE
T ss_pred --CCHHHH-HHHHHcCCCEEEEeCcccc-----CcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHH-HCCCCEEE
Confidence 234444 4444789999999767322 2345677777887766 57889999999999999998 79999999
Q ss_pred eccccccCccc
Q psy7343 361 TAEGNLYNPAL 371 (487)
Q Consensus 361 iGRa~l~~P~l 371 (487)
||+++|..|+.
T Consensus 237 VGe~lm~~~d~ 247 (254)
T PF00218_consen 237 VGEALMRSPDP 247 (254)
T ss_dssp ESHHHHTSSSH
T ss_pred ECHHHhCCCCH
Confidence 99999999875
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >KOG2550|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0024 Score=65.62 Aligned_cols=101 Identities=24% Similarity=0.295 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc-------cCC--CCCCCCCCCHHHHH
Q psy7343 256 WPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT-------VDQ--RGMNTGLASWEHIT 325 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt-------~~~--~g~~~g~~~~~~i~ 325 (487)
-..-.++++.+++.. .+.|++- ++ -+.+-++.|.++|+|++-| |-+ ++- -|.-.+.+-++ +.
T Consensus 276 S~~qiemik~iK~~yP~l~ViaG-----NV-VT~~qa~nLI~aGaDgLrV-GMGsGSiCiTqevma~GrpQ~TAVy~-va 347 (503)
T KOG2550|consen 276 SIYQLEMIKYIKETYPDLQIIAG-----NV-VTKEQAANLIAAGADGLRV-GMGSGSICITQKVMACGRPQGTAVYK-VA 347 (503)
T ss_pred chhHHHHHHHHHhhCCCceeecc-----ce-eeHHHHHHHHHccCceeEe-ccccCceeeeceeeeccCCcccchhh-HH
Confidence 345567788888776 3445542 33 3445567888999999988 421 111 11112223232 34
Q ss_pred HHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 326 ~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+.....++|||+.|||.+.-++.+.+ ..||+.||+|-=+
T Consensus 348 ~~A~q~gvpviADGGiq~~Ghi~KAl-~lGAstVMmG~lL 386 (503)
T KOG2550|consen 348 EFANQFGVPCIADGGIQNVGHVVKAL-GLGASTVMMGGLL 386 (503)
T ss_pred HHHHhcCCceeecCCcCccchhHhhh-hcCchhheeccee
Confidence 55566799999999999999999999 7999999999533
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0085 Score=59.79 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh-----
Q psy7343 258 LLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA----- 330 (487)
Q Consensus 258 ~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~----- 330 (487)
.+.+.++.+|+..+ .+|.+- .++.+++. .+.++|+|.|++. ..+.+.++++.+.
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VE------v~tleea~-~A~~~GaDiI~LD------------n~~~e~l~~~v~~~~~~~ 227 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIE------CESLEEAK-NAMNAGADIVMCD------------NMSVEEIKEVVAYRNANY 227 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEE------eCCHHHHH-HHHHcCCCEEEEC------------CCCHHHHHHHHHHhhccC
Confidence 34566777776654 345553 34455544 4557999999971 1245556655443
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 331 ~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.++.+.++||| |++.+.++. ++|+|.+.+|.....-|++
T Consensus 228 ~~~~ieAsGgI-t~~ni~~ya-~~GvD~IsvG~l~~sa~~~ 266 (273)
T PRK05848 228 PHVLLEASGNI-TLENINAYA-KSGVDAISSGSLIHQATWI 266 (273)
T ss_pred CCeEEEEECCC-CHHHHHHHH-HcCCCEEEeChhhcCCCcc
Confidence 25569999999 999999998 7999999999866544443
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0029 Score=59.12 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=55.1
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccC-CCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVD-QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~-~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+..+ ++.+.+.|+|++.+..--.. .++.+ .+..|+.+.++++..++||++-||| +.+++.++. ++|++||.+.+
T Consensus 103 h~~~e-~~~a~~~g~dYv~~gpvf~T~sk~~~-~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~-~~Ga~gvAvi~ 178 (180)
T PF02581_consen 103 HSLEE-AREAEELGADYVFLGPVFPTSSKPGA-PPLGLDGLREIARASPIPVYALGGI-TPENIPELR-EAGADGVAVIS 178 (180)
T ss_dssp SSHHH-HHHHHHCTTSEEEEETSS--SSSSS--TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHH-HTT-SEEEESH
T ss_pred CcHHH-HHHhhhcCCCEEEECCccCCCCCccc-cccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHH-HcCCCEEEEEe
Confidence 34455 77778899999999332111 11222 3456899999999999999999999 688899888 79999999987
Q ss_pred cc
Q psy7343 364 GN 365 (487)
Q Consensus 364 a~ 365 (487)
++
T Consensus 179 aI 180 (180)
T PF02581_consen 179 AI 180 (180)
T ss_dssp HH
T ss_pred eC
Confidence 63
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.011 Score=57.17 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC----HHHHHHHHhhC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS----WEHITAVRKAL 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~----~~~i~~i~~~~ 331 (487)
.+.+.+.++..++ .++.+++-+ .+..+ ++.+.+.|.+.|-+-+|.....+.-...+. .+.++.+++..
T Consensus 100 ~~e~~~~v~~a~~-~Gl~~I~~v------~~~~~-~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~ 171 (223)
T PRK04302 100 LADIEAVVERAKK-LGLESVVCV------NNPET-SAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVN 171 (223)
T ss_pred HHHHHHHHHHHHH-CCCeEEEEc------CCHHH-HHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhcc
Confidence 4446667766655 466555432 22333 344667788888764542211110000011 24445566644
Q ss_pred -CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 332 -TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 332 -~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++||++.|||.+.+++.+++ ..|+|||.+|++++..+++
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~-~~gadGvlVGsa~l~~~~~ 211 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAAL-ELGADGVLLASGVVKAKDP 211 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHH-cCCCCEEEEehHHhCCcCH
Confidence 79999999999999999998 7999999999999976554
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0095 Score=59.87 Aligned_cols=94 Identities=17% Similarity=0.323 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh-----hCCC
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK-----ALTI 333 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~-----~~~i 333 (487)
+.+.++.+++..+....+-+ +.++.+++.+.+ ++|+|.|++ +. ...+.++++.+ .-++
T Consensus 182 i~~av~~~r~~~~~~~~I~V----Ev~tleea~eA~-~~GaD~I~L-Dn-----------~~~e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEV----ETETLEQVQEAL-EYGADIIML-DN-----------MPVDLMQQAVQLIRQQNPRV 244 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEE----ECCCHHHHHHHH-HcCCCEEEE-CC-----------CCHHHHHHHHHHHHhcCCCe
Confidence 45556666665542222222 445566665544 799999999 31 12233333332 3478
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
|+.++||| +.+.+.++. .+|+|++.+|.....-|++
T Consensus 245 ~leAsGGI-t~~ni~~ya-~tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 245 KIEASGNI-TLETIRAVA-ETGVDYISSSAPITRSPWL 280 (288)
T ss_pred EEEEECCC-CHHHHHHHH-HcCCCEEEEchhhhCCCcc
Confidence 99999999 589999998 7999999999977755544
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.023 Score=58.40 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=73.2
Q ss_pred cCChHHHHHHHHHHhh-hccCcEEEEeecccccc-cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH----HHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQ-AVQVPVSCKIRIYQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW----EHITA 326 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~-~~~iPV~vKiR~~~d~~-~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~ 326 (487)
..+++..... +.+++ ..++|+++|+....... ...++.+..+..++|++.+|--.........|..++ +.++.
T Consensus 95 ~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~ 173 (333)
T TIGR02151 95 LKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAE 173 (333)
T ss_pred ccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHH
Confidence 4578876666 66776 56899999984422211 255677777777889998864221111112233334 78889
Q ss_pred HHhhCCCcEEE--cCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 327 VRKALTIPVIA--NGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 327 i~~~~~iPVi~--nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
+++.+++||+. +|.-.+.+.++.+. +.|+|+|.++-
T Consensus 174 i~~~~~vPVivK~~g~g~~~~~a~~L~-~aGvd~I~Vsg 211 (333)
T TIGR02151 174 ICSQLSVPVIVKEVGFGISKEVAKLLA-DAGVSAIDVAG 211 (333)
T ss_pred HHHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEECC
Confidence 99999999986 56657888887766 79999999964
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.015 Score=55.95 Aligned_cols=144 Identities=14% Similarity=0.136 Sum_probs=90.4
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcc------eeec-cC-----ccccccCChHHHH----------
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM------VAKR-GH-----YGAYLQDDWPLLT---------- 260 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~------i~~~-gr-----~G~~l~~d~~~i~---------- 260 (487)
.+++.=+++.+.++....++.+.+. ...+||-+-.|.. +..+ +. .|+.-.-+.+.+.
T Consensus 13 ~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 13 NGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 5677777888888888888766655 7777776665541 1110 00 0111012333333
Q ss_pred -------HHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-
Q psy7343 261 -------NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT- 332 (487)
Q Consensus 261 -------eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~- 332 (487)
++++..++ .++|++- ...+..|+.+. .+.|+|.|.+... +..-.++++.++..+.
T Consensus 93 vsP~~~~~v~~~~~~-~~i~~iP------G~~T~~E~~~A-~~~Gad~vklFPa---------~~~G~~~ik~l~~~~p~ 155 (213)
T PRK06552 93 VSPSFNRETAKICNL-YQIPYLP------GCMTVTEIVTA-LEAGSEIVKLFPG---------STLGPSFIKAIKGPLPQ 155 (213)
T ss_pred ECCCCCHHHHHHHHH-cCCCEEC------CcCCHHHHHHH-HHcCCCEEEECCc---------ccCCHHHHHHHhhhCCC
Confidence 33333222 2444443 33455665555 5699999998331 1112577888888875
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+|+++.|||+ .+++.+++ ..|++++.+|..++
T Consensus 156 ip~~atGGI~-~~N~~~~l-~aGa~~vavgs~l~ 187 (213)
T PRK06552 156 VNVMVTGGVN-LDNVKDWF-AAGADAVGIGGELN 187 (213)
T ss_pred CEEEEECCCC-HHHHHHHH-HCCCcEEEEchHHh
Confidence 9999999997 78999999 79999999999885
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.028 Score=56.47 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--CCCHHHHHHHHhhCCCcEEEcCC--CCCHHHHHHHHHhcCCcEEEe
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--LASWEHITAVRKALTIPVIANGN--IQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~~~~~~i~~i~~~~~iPVi~nGg--I~s~~da~~~l~~~Gad~Vmi 361 (487)
+..+..+..+++|+|.+.+.-.+.... |.+ ..+++.++++++.+++|++.-|| |. .+++.+++ ..|++.|-+
T Consensus 157 ~pe~a~~f~~~tgvD~LAvaiGt~Hg~--y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i-~~Gi~KINv 232 (286)
T PRK06801 157 DPQLARDFVDRTGIDALAVAIGNAHGK--YKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAI-ELGIHKINF 232 (286)
T ss_pred CHHHHHHHHHHHCcCEEEeccCCCCCC--CCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHH-HcCCcEEEe
Confidence 446666677789999999832332222 444 35889999999999999999888 75 57888888 799999999
Q ss_pred cccc
Q psy7343 362 AEGN 365 (487)
Q Consensus 362 GRa~ 365 (487)
++.+
T Consensus 233 ~T~~ 236 (286)
T PRK06801 233 YTGM 236 (286)
T ss_pred hhHH
Confidence 9864
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0095 Score=59.56 Aligned_cols=126 Identities=20% Similarity=0.186 Sum_probs=84.8
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+++.+ ++||++.+.-. +..+..+.+
T Consensus 16 D~~~~~~~i~~l~~~--------Gv-~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~-~~~~~i~~a 85 (281)
T cd00408 16 DLDALRRLVEFLIEA--------GV-DGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGAN-STREAIELA 85 (281)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCc-cHHHHHHHH
Confidence 667777777766555 44 3444555567665445666677777777665 58888876222 445688999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++....... .+.....+.++.+.+.+++||+. .|--.+++.+.++.+
T Consensus 86 ~~a~~~Gad~v~v~pP~y~~---~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 86 RHAEEAGADGVLVVPPYYNK---PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 99999999999995432111 11112347788888888999873 467778888888873
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.04 Score=52.89 Aligned_cols=148 Identities=14% Similarity=0.192 Sum_probs=92.0
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV 284 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~ 284 (487)
++..|...|...+.+-.+.+++. .|.+.+..- .|.+. .+.-.=-++++++++.+++|+.+-. =+
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvM-------DG~FV----PN~tfG~~~i~~l~~~t~~~~DvHL----Mv 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIE-------DTSFI----NNITFGMKTIQAVAQQTRHPLSFHL----MV 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEecc-------CCCcC----CccccCHHHHHHHHhcCCCCeEEEe----cc
Confidence 34556666777777777777665 555433311 11111 1111112345556666777877765 45
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccC-------------------------------------------CCCCCCCCCC-
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVD-------------------------------------------QRGMNTGLAS- 320 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~-------------------------------------------~~g~~~g~~~- 320 (487)
.+...+.+.+.++|+|.|++|--+.. -.+++.|...
T Consensus 68 ~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~ 147 (210)
T PRK08005 68 SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFI 147 (210)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceec
Confidence 57888899999999999999874210 0122333322
Q ss_pred ---HHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 321 ---WEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 321 ---~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
++.++++++.. ...|..-|||+ .+.+.++. +.|||.+.+|+++..+++
T Consensus 148 ~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~-~aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 148 AAMCEKVSQSREHFPAAECWADGGIT-LRAARLLA-AAGAQHLVIGRALFTTAN 199 (210)
T ss_pred HHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHH-HCCCCEEEEChHhhCCCC
Confidence 24555555544 34688999997 67788887 799999999998765443
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0075 Score=62.32 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=72.4
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeecc-------CCHHHHHHHHHhhCCc--CcEEEeecCCCccee-eccCccc
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFCG-------NDSKNLTEAAKLAEPH--CDGIDINIGCPQMVA-KRGHYGA 250 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g-------~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~-~~gr~G~ 250 (487)
.|.+......++++ ....+.+|.++|.. .+.++..++++.+++. .|.|+|+.|.-.... .+.....
T Consensus 186 slenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~ 265 (343)
T cd04734 186 SLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPS 265 (343)
T ss_pred CHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCC
Confidence 44444455556664 22233344555432 3467888999988876 699999877521110 0111111
Q ss_pred cccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
... ......++++.+++.+++||++++ ++.+..++.+.+++.++|.|++ ||..
T Consensus 266 ~~~-~~~~~~~~~~~ik~~~~ipvi~~G----~i~~~~~~~~~l~~~~~D~V~~-gR~~ 318 (343)
T cd04734 266 MGM-PPGPFLPLAARIKQAVDLPVFHAG----RIRDPAEAEQALAAGHADMVGM-TRAH 318 (343)
T ss_pred CCC-CcchhHHHHHHHHHHcCCCEEeeC----CCCCHHHHHHHHHcCCCCeeee-cHHh
Confidence 111 111223455667778899999998 6667788888888888999999 8853
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0076 Score=63.19 Aligned_cols=130 Identities=17% Similarity=0.236 Sum_probs=81.9
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeecc---------------------CCHHHHHHHHHhhCCc-CcEEEeecCC
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFCG---------------------NDSKNLTEAAKLAEPH-CDGIDINIGC 238 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g---------------------~d~~~~~~aa~~~~~~-~d~IdiN~Gc 238 (487)
.|.+......++++ ....+.||+++|.. .+.++..++++.+++. .|.|+++.|.
T Consensus 196 slenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 196 SLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred CHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 34444445555554 23446689999863 2457778889988876 8999999886
Q ss_pred CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC
Q psy7343 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318 (487)
Q Consensus 239 P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~ 318 (487)
........ .... .......++++.+++.+++||++++ ++.+..+..+.+++.++|.|++ ||...
T Consensus 276 ~~~~~~~~--~~~~-~~~~~~~~~~~~ik~~~~~pvi~~G----~i~~~~~~~~~l~~g~~D~V~~-gR~~l-------- 339 (382)
T cd02931 276 YDAWYWNH--PPMY-QKKGMYLPYCKALKEVVDVPVIMAG----RMEDPELASEAINEGIADMISL-GRPLL-------- 339 (382)
T ss_pred Cccccccc--CCcc-CCcchhHHHHHHHHHHCCCCEEEeC----CCCCHHHHHHHHHcCCCCeeee-chHhH--------
Confidence 22111000 0000 0111223456667888899999998 5557788888888888999999 88432
Q ss_pred CCHHHHHHHHhh
Q psy7343 319 ASWEHITAVRKA 330 (487)
Q Consensus 319 ~~~~~i~~i~~~ 330 (487)
++-++++++++.
T Consensus 340 adP~l~~k~~~g 351 (382)
T cd02931 340 ADPDVVNKIRRG 351 (382)
T ss_pred hCccHHHHHHcC
Confidence 233456666653
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0045 Score=73.33 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC------CCCCCCCHH-HHHH
Q psy7343 255 DWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG------MNTGLASWE-HITA 326 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g------~~~g~~~~~-~i~~ 326 (487)
..+.+.+++..+|+.. +.||.+|+-.+..+ -+++.-+.++|+|.|+|.|....... .+.|.+ |+ .+.+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v---g~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP-~e~gL~~ 1054 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGV---GTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSP-WELGLAE 1054 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCc---cHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCcc-HHHHHHH
Confidence 4677788888888776 67999998443222 33444566799999999875321110 012222 32 2433
Q ss_pred HHhh-----C--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 327 VRKA-----L--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 327 i~~~-----~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+.+. + ++.+++.||+.|+.|+.+++ ..|||.|.+||++|--
T Consensus 1055 ~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~-aLGAd~~~~gt~~lia 1102 (1485)
T PRK11750 1055 THQALVANGLRHKIRLQVDGGLKTGLDVIKAA-ILGAESFGFGTGPMVA 1102 (1485)
T ss_pred HHHHHHhcCCCcceEEEEcCCcCCHHHHHHHH-HcCCcccccchHHHHH
Confidence 3332 2 58999999999999999999 7999999999997754
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.014 Score=55.03 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=55.5
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
..+..++. ...+.|+|+|-+.. |. ...-.+.++.++..+ ++|+++.||| |.+++.+++ +.|+++|.++
T Consensus 112 ~~t~~e~~-~A~~~Gadyv~~Fp-t~-------~~~G~~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l-~aGa~~vav~ 180 (187)
T PRK07455 112 ALTPTEIV-TAWQAGASCVKVFP-VQ-------AVGGADYIKSLQGPLGHIPLIPTGGV-TLENAQAFI-QAGAIAVGLS 180 (187)
T ss_pred cCCHHHHH-HHHHCCCCEEEECc-CC-------cccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHH-HCCCeEEEEe
Confidence 44556654 44568999998832 10 011357899999888 6999999999 679999999 6999999999
Q ss_pred ccccc
Q psy7343 363 EGNLY 367 (487)
Q Consensus 363 Ra~l~ 367 (487)
++++.
T Consensus 181 s~i~~ 185 (187)
T PRK07455 181 GQLFP 185 (187)
T ss_pred hhccc
Confidence 98764
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.047 Score=52.37 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=99.3
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
..+...|...|...+.+-.+.++++ .|.|.+..-- |.+- .|.-.=-.+++++++.++.|+.+-.
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMD-------ghFV----PNiTfGp~~v~~l~~~t~~p~DvHL---- 68 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMD-------GHFV----PNITFGPPVVKALRKITDLPLDVHL---- 68 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccC-------CCcC----CCcccCHHHHHHHhhcCCCceEEEE----
Confidence 3466677777888888877777765 6655443211 1111 1112223456667777788988876
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccC-------------------------------------------CCCCCCCCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVD-------------------------------------------QRGMNTGLA 319 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~-------------------------------------------~~g~~~g~~ 319 (487)
=+.+...+.+.+.++|+|.|++|.-... -.+++.|..
T Consensus 69 MV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~ 148 (220)
T COG0036 69 MVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQK 148 (220)
T ss_pred ecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccc
Confidence 5668899999999999999999873100 123344443
Q ss_pred C----HHHHHHHHhhCC----CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 320 S----WEHITAVRKALT----IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 320 ~----~~~i~~i~~~~~----iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
. .+.++++++..+ +-|-.-|||+ .+.+.++. +.|||.+..|+++..+++
T Consensus 149 Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~-~AGad~~VaGSalF~~~d 205 (220)
T COG0036 149 FIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLA-AAGADVFVAGSALFGADD 205 (220)
T ss_pred cCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHH-HcCCCEEEEEEEEeCCcc
Confidence 2 355666665543 4466889996 56777777 799999999999888877
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.026 Score=57.46 Aligned_cols=179 Identities=14% Similarity=0.068 Sum_probs=92.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+-++++|||.++|+..|=..+.+.|. +.+=......+.+- ...+.+.. ..+.|+.+-+... . |.
T Consensus 11 ~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~----~~i~~~~~-~t~~pfgvn~~~~----~------~~ 75 (307)
T TIGR03151 11 EYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVR----KEIRKVKE-LTDKPFGVNIMLL----S------PF 75 (307)
T ss_pred CCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHH----HHHHHHHH-hcCCCcEEeeecC----C------CC
Confidence 44899999999999999988888875 43222222222221 11111211 1256776654211 1 10
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN 235 (487)
....-.+..+.|+.+..+-. -.+....+.++. .+..+.+++. +. +.++.+++. +|+|-++
T Consensus 76 ----~~~~~~~~~~~~v~~v~~~~-------g~p~~~i~~lk~--~g~~v~~~v~--s~----~~a~~a~~~GaD~Ivv~ 136 (307)
T TIGR03151 76 ----VDELVDLVIEEKVPVVTTGA-------GNPGKYIPRLKE--NGVKVIPVVA--SV----ALAKRMEKAGADAVIAE 136 (307)
T ss_pred ----HHHHHHHHHhCCCCEEEEcC-------CCcHHHHHHHHH--cCCEEEEEcC--CH----HHHHHHHHcCCCEEEEE
Confidence 01122334456755433211 122212222222 2455655542 22 233444444 6666554
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
.-- ..|..|. ..++.++.+ +++.+++||++.+ ++.+..+++..+. .|+|+|++ |.
T Consensus 137 g~e-----agGh~g~--~~~~~ll~~----v~~~~~iPviaaG----GI~~~~~~~~al~-~GA~gV~i-Gt 191 (307)
T TIGR03151 137 GME-----SGGHIGE--LTTMALVPQ----VVDAVSIPVIAAG----GIADGRGMAAAFA-LGAEAVQM-GT 191 (307)
T ss_pred Ccc-----cCCCCCC--CcHHHHHHH----HHHHhCCCEEEEC----CCCCHHHHHHHHH-cCCCEeec-ch
Confidence 210 0111111 124555555 5556689999998 7778888888886 89999999 54
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.037 Score=55.62 Aligned_cols=76 Identities=16% Similarity=0.296 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCC--CCCCHHHHHHHHhhCCCcEEEcC--CCCCHHHHHHHHHhcCCcEEEe
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNT--GLASWEHITAVRKALTIPVIANG--NIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~--g~~~~~~i~~i~~~~~iPVi~nG--gI~s~~da~~~l~~~Gad~Vmi 361 (487)
+.+++.+..+++|+|.+.+.-.+.... |+ ...+++.++++++.+++|+++-| ||. .+++.+++ +.|+++|-+
T Consensus 154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~--~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~-~e~i~~~i-~~Gi~kiNv 229 (282)
T TIGR01859 154 DPDEAEQFVKETGVDYLAAAIGTSHGK--YKGEPGLDFERLKEIKELTNIPLVLHGASGIP-EEQIKKAI-KLGIAKINI 229 (282)
T ss_pred CHHHHHHHHHHHCcCEEeeccCccccc--cCCCCccCHHHHHHHHHHhCCCEEEECCCCCC-HHHHHHHH-HcCCCEEEE
Confidence 566666666679999999621221111 22 33578999999999999999999 885 57788888 689999999
Q ss_pred cccc
Q psy7343 362 AEGN 365 (487)
Q Consensus 362 GRa~ 365 (487)
++.+
T Consensus 230 ~T~l 233 (282)
T TIGR01859 230 DTDC 233 (282)
T ss_pred CcHH
Confidence 9854
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.016 Score=57.74 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=57.1
Q ss_pred HHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEE
Q psy7343 261 NLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVI 336 (487)
Q Consensus 261 eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi 336 (487)
.-++.+|+..+ .+|.+- ..+.++ ++.+.+.|+|+|++ +. ...+.++++.+.+ .+|+.
T Consensus 166 ~av~~~r~~~~~~~~Igve------v~t~ee-a~~A~~~gaDyI~l-d~-----------~~~e~lk~~v~~~~~~ipi~ 226 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVE------VESLEE-AEEAAEAGADIIML-DN-----------MKPEEIKEAVQLLKGRVLLE 226 (265)
T ss_pred HHHHHHHHhCCCCCeEEEE------eCCHHH-HHHHHHcCCCEEEE-CC-----------CCHHHHHHHHHHhcCCCcEE
Confidence 34555666553 334443 334444 55567899999999 22 2235666666655 38999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+.||| +.+.+.++. ++|+|++.+|.-
T Consensus 227 AsGGI-~~~ni~~~a-~~Gvd~Isvgai 252 (265)
T TIGR00078 227 ASGGI-TLDNLEEYA-ETGVDVISSGAL 252 (265)
T ss_pred EECCC-CHHHHHHHH-HcCCCEEEeCHH
Confidence 99999 589999998 799999999643
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.063 Score=52.05 Aligned_cols=145 Identities=15% Similarity=0.222 Sum_probs=93.1
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEEEee--cCCCcceeeccCccccccCChHHHHHHHHHHhhh-ccCcEEEEeecc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDIN--IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-VQVPVSCKIRIY 281 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN--~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-~~iPV~vKiR~~ 281 (487)
++..|...|...+.+-.+.+++. .|.+.+. =|+ +- .+.-+=.++++++++. +++|+.+-+
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~---------FV----PN~tfg~~~i~~lr~~~~~~~~dvHL--- 69 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNH---------YV----PNLTIGPMVCQALRKHGITAPIDVHL--- 69 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCc---------cC----CCcccCHHHHHHHHhhCCCCCEEEEe---
Confidence 45666777888888777777765 5654443 232 11 1111112355567766 578887766
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccC-------------------------------------------CCCCCCCC
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVD-------------------------------------------QRGMNTGL 318 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~-------------------------------------------~~g~~~g~ 318 (487)
=+.+...+.+.+.++|+|.|++|.-... -.+++.|.
T Consensus 70 -Mv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ 148 (223)
T PRK08745 70 -MVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQ 148 (223)
T ss_pred -ccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCc
Confidence 4557888889999999999999874210 01233343
Q ss_pred CC----HHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 319 AS----WEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 319 ~~----~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
.. ++.++++++.. ++.|-..|||+ .+.+.++. +.|||.+++|+++...+
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~-~aGaDi~V~GSaiF~~~ 206 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIA-AAGADTFVAGSAIFNAP 206 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHH-HcCCCEEEEChhhhCCC
Confidence 22 24555555532 46688999997 67888887 79999999999876443
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.088 Score=51.70 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=92.4
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.||..|=+--|+.++.++.. -.+|+|=+.... -+.+.+.++++... .+++-+.+-+
T Consensus 102 ~~PvL~KDFIid~~QI~ea~~---~GADavLLI~~~---------------L~~~~l~~l~~~a~-~lGle~LVEV---- 158 (247)
T PRK13957 102 KIPVLRKDFILDEIQIREARA---FGASAILLIVRI---------------LTPSQIKSFLKHAS-SLGMDVLVEV---- 158 (247)
T ss_pred CCCEEeccccCCHHHHHHHHH---cCCCEEEeEHhh---------------CCHHHHHHHHHHHH-HcCCceEEEE----
Confidence 579988866557777666553 224444332221 13556667666543 4577777765
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
...+-++...++|++.|.|-.|.-. +-..+.+...++...+ +..+|+-+||.|++|+.++. .. +|+|.
T Consensus 159 ---h~~~El~~a~~~ga~iiGINnRdL~-----t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~-~~-~davL 228 (247)
T PRK13957 159 ---HTEDEAKLALDCGAEIIGINTRDLD-----TFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFR-KL-VDAAL 228 (247)
T ss_pred ---CCHHHHHHHHhCCCCEEEEeCCCCc-----cceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHH-Hh-CCEEE
Confidence 2333445566689999999666432 2235667777777766 56788899999999999987 45 99999
Q ss_pred eccccccCccc
Q psy7343 361 TAEGNLYNPAL 371 (487)
Q Consensus 361 iGRa~l~~P~l 371 (487)
||+++|..++.
T Consensus 229 vG~~lm~~~d~ 239 (247)
T PRK13957 229 IGTYFMEKKDI 239 (247)
T ss_pred ECHHHhCCCCH
Confidence 99999999874
|
|
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.022 Score=56.83 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=59.1
Q ss_pred HHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEE
Q psy7343 262 LVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA 337 (487)
Q Consensus 262 iv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~ 337 (487)
-++.+|+..+ .++.+ ...+..+ ++.+.+.|+|.|++ +. ...+.++++.+.. ++|+.+
T Consensus 171 ~v~~~r~~~~~~~~Igv------ev~s~ee-a~~A~~~gaDyI~l-d~-----------~~~e~l~~~~~~~~~~ipi~A 231 (268)
T cd01572 171 AVRRARAAAPFTLKIEV------EVETLEQ-LKEALEAGADIIML-DN-----------MSPEELREAVALLKGRVLLEA 231 (268)
T ss_pred HHHHHHHhCCCCCeEEE------EECCHHH-HHHHHHcCCCEEEE-CC-----------cCHHHHHHHHHHcCCCCcEEE
Confidence 3455665553 23333 3345544 44556799999999 32 2356777777666 599999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
.||| +.+.+.++. .+|+|++.+|.-..
T Consensus 232 iGGI-~~~ni~~~a-~~Gvd~Iav~sl~~ 258 (268)
T cd01572 232 SGGI-TLENIRAYA-ETGVDYISVGALTH 258 (268)
T ss_pred ECCC-CHHHHHHHH-HcCCCEEEEEeeec
Confidence 9999 589999998 79999999998554
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.022 Score=54.39 Aligned_cols=150 Identities=14% Similarity=0.100 Sum_probs=91.2
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcce----eeccCc-----cccccCChHHHHH-----------
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMV----AKRGHY-----GAYLQDDWPLLTN----------- 261 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i----~~~gr~-----G~~l~~d~~~i~e----------- 261 (487)
..+++.=+|+.++++..+.++.+.+. ++.|||.+..|... ..+..+ |+.-.-+.+.+.+
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs 86 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS 86 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC
Confidence 35677778888888888888877665 78888877665420 000011 1100123333333
Q ss_pred ------HHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCc
Q psy7343 262 ------LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIP 334 (487)
Q Consensus 262 ------iv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iP 334 (487)
+++..++ .++|++- ...+..|+.. ..++|++.|-+..-. . +.| ..+++.++.-+ ++|
T Consensus 87 P~~~~~v~~~~~~-~~i~~iP------G~~TptEi~~-A~~~Ga~~vKlFPA~--~---~GG---~~yikal~~plp~i~ 150 (204)
T TIGR01182 87 PGLTPELAKHAQD-HGIPIIP------GVATPSEIML-ALELGITALKLFPAE--V---SGG---VKMLKALAGPFPQVR 150 (204)
T ss_pred CCCCHHHHHHHHH-cCCcEEC------CCCCHHHHHH-HHHCCCCEEEECCch--h---cCC---HHHHHHHhccCCCCc
Confidence 3332222 2344333 2335555544 445789988883311 0 111 35677777765 899
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
++..|||.. +++.+.+ +.|+.+|.+|+.+.....
T Consensus 151 ~~ptGGV~~-~N~~~~l-~aGa~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 151 FCPTGGINL-ANVRDYL-AAPNVACGGGSWLVPKDL 184 (204)
T ss_pred EEecCCCCH-HHHHHHH-hCCCEEEEEChhhcCchh
Confidence 999999964 8999999 799999999997775443
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.028 Score=56.93 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=84.9
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-..+.-.++++.+++.+ .+||++-+-- .+..+..+++
T Consensus 23 D~~a~~~lv~~li~~--------Gv-~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~eai~la 92 (299)
T COG0329 23 DEEALRRLVEFLIAA--------GV-DGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAEAIELA 92 (299)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHHHHHHH
Confidence 667778887776666 55 4566666677665445666677777777776 4788886511 1346789999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-Ec-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-AN-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-~n-----GgI~s~~da~~~l 351 (487)
+..++.|+|++++..--... .+....++.++.+.+.+++|+| +| |--.+++.+.++-
T Consensus 93 k~a~~~Gad~il~v~PyY~k---~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la 155 (299)
T COG0329 93 KHAEKLGADGILVVPPYYNK---PSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLA 155 (299)
T ss_pred HHHHhcCCCEEEEeCCCCcC---CChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 99999999999995431110 0111235778888888999976 45 5556777777665
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.11 Score=52.29 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=92.3
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
+.||.+.+. +.|.+...++ +.. |. ..+-..+. .-.+..|.+..+++++..+ ..+++|-+-+ ++
T Consensus 77 ~VPV~lHLDHg~~~e~i~~a---i~~---------Gf-tSVM~DgS-~lp~eeNi~~Trevv~~Ah-~~gv~VEaElG~i 141 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEA---IDA---------GF-TSVMIDAS-HHPFEENVETTKKVVEYAH-ARNVSVEAELGTV 141 (285)
T ss_pred CCcEEEECCCCCCHHHHHHH---HHc---------CC-CEEEEeCC-CCCHHHHHHHHHHHHHHHH-HcCCEEEEEEecc
Confidence 369999987 5565444433 222 33 22323221 1122456677777777554 3477776643 23
Q ss_pred cc--c--------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC--CCHHHHHHHHhhCCCcEEEcCCCCCH-HHH
Q psy7343 281 YQ--D--------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL--ASWEHITAVRKALTIPVIANGNIQCL-ADV 347 (487)
Q Consensus 281 ~~--d--------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~--~~~~~i~~i~~~~~iPVi~nGgI~s~-~da 347 (487)
+. | ..+.++..+.++++|+|.+.|.=.|..+. |.+. -+++.+++|++.+++|++.-|+=..+ +++
T Consensus 142 gg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~--Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~ 219 (285)
T PRK07709 142 GGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGP--YKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADI 219 (285)
T ss_pred CCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccC--cCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHH
Confidence 22 1 24778888889999999998743333322 5443 47899999999999999987776666 567
Q ss_pred HHHHHhcCCcEEEeccc
Q psy7343 348 EACLAQTGVAGVMTAEG 364 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa 364 (487)
.+++ ..|+.-|=|++.
T Consensus 220 ~~ai-~~Gi~KiNi~T~ 235 (285)
T PRK07709 220 EKAI-SLGTSKINVNTE 235 (285)
T ss_pred HHHH-HcCCeEEEeChH
Confidence 7787 788888877763
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.023 Score=56.70 Aligned_cols=90 Identities=26% Similarity=0.301 Sum_probs=59.0
Q ss_pred HHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC----CCc
Q psy7343 261 NLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL----TIP 334 (487)
Q Consensus 261 eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~----~iP 334 (487)
.-++.+|+..+ .++.+. ..+..++.+ ..+.|+|.|++ +. ...+.++++.+.+ ++|
T Consensus 169 ~~v~~~r~~~~~~~~I~ve------v~t~eea~~-A~~~gaD~I~l-d~-----------~~~e~l~~~v~~i~~~~~i~ 229 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVE------VETLEEAEE-ALEAGADIIML-DN-----------MSPEELKEAVKLLKGLPRVL 229 (269)
T ss_pred HHHHHHHHhCCCCCeEEEe------cCCHHHHHH-HHHcCCCEEEE-CC-----------CCHHHHHHHHHHhccCCCeE
Confidence 34555666553 334443 345555444 45689999999 22 1224455544444 789
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+.+.|||+ .+.+.++. .+|+|++.+|.....-|++
T Consensus 230 i~asGGIt-~~ni~~~a-~~Gad~Isvgal~~s~~~~ 264 (269)
T cd01568 230 LEASGGIT-LENIRAYA-ETGVDVISTGALTHSAPAL 264 (269)
T ss_pred EEEECCCC-HHHHHHHH-HcCCCEEEEcHHHcCCCcc
Confidence 99999996 78899988 7999999998655554443
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.053 Score=54.50 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=94.9
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSC 276 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~v 276 (487)
..+.||++-+- | .++.+..+.++.++++ +.+|.|-=....+ +.|..++.-+-+.+...+-+++++++. +.++.+
T Consensus 71 ~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK--~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~I 148 (285)
T TIGR02317 71 VTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPK--RCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVI 148 (285)
T ss_pred ccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc--ccCCCCCccccCHHHHHHHHHHHHHhccCCCEEE
Confidence 34689999986 3 3588888888888776 7777775332111 122222222234554444455555543 567888
Q ss_pred Eeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc---CCCCCHHHHHH
Q psy7343 277 KIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN---GNIQCLADVEA 349 (487)
Q Consensus 277 KiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n---GgI~s~~da~~ 349 (487)
+-|.. .+.++.++-++...++|+|.|.++|- .+.+.++++.+.++.|+.+| |+-.-.-++++
T Consensus 149 iARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~-----------~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~e 217 (285)
T TIGR02317 149 IARTDARAVEGLDAAIERAKAYVEAGADMIFPEAL-----------TSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADE 217 (285)
T ss_pred EEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCC-----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHH
Confidence 88863 23456677778888999999999542 24677888988888998543 33211123455
Q ss_pred HHHhcCCcEEEeccc
Q psy7343 350 CLAQTGVAGVMTAEG 364 (487)
Q Consensus 350 ~l~~~Gad~VmiGRa 364 (487)
+- +.|++.|..|..
T Consensus 218 L~-~lGv~~v~~~~~ 231 (285)
T TIGR02317 218 LR-EAGYKMVIYPVT 231 (285)
T ss_pred HH-HcCCcEEEEchH
Confidence 54 689999998843
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.031 Score=55.94 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=53.2
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.++..+ ++...+.|+|.|++ +. ...+.++++.+.. ++|+.++||| +.+.+.++. .+|+|++.+
T Consensus 196 v~tlee-a~eA~~~gaD~I~L-D~-----------~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a-~tGvD~Isv 260 (277)
T PRK05742 196 VESLDE-LRQALAAGADIVML-DE-----------LSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIA-ETGVDYISI 260 (277)
T ss_pred eCCHHH-HHHHHHcCCCEEEE-CC-----------CCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHH-HcCCCEEEE
Confidence 344444 45555889999988 32 2355666666655 8999999999 589999998 799999999
Q ss_pred ccccccCccc
Q psy7343 362 AEGNLYNPAL 371 (487)
Q Consensus 362 GRa~l~~P~l 371 (487)
|.-...-|++
T Consensus 261 g~lt~s~~~~ 270 (277)
T PRK05742 261 GAMTKDVKAV 270 (277)
T ss_pred ChhhcCCccc
Confidence 9754444443
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.035 Score=53.39 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=61.1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCC--CCCCCCCCCHHHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQ--RGMNTGLASWEHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~--~g~~~g~~~~~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+..+..+ +..+++.|+|++.+ |-.... +........++.++++.+. .++||++-|||+ .+++.+++ .+|++||
T Consensus 108 S~H~~~e-~~~A~~~gaDYi~l-gpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~-~~Ga~Gi 183 (211)
T PRK03512 108 STHDDME-IDVALAARPSYIAL-GHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVL-ATGVGSI 183 (211)
T ss_pred eCCCHHH-HHHHhhcCCCEEEE-CCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHH-HcCCCEE
Confidence 4445555 45556789999999 532211 1112333467888888776 489999999997 78899999 7999999
Q ss_pred EeccccccCccc
Q psy7343 360 MTAEGNLYNPAL 371 (487)
Q Consensus 360 miGRa~l~~P~l 371 (487)
.+-++++..++.
T Consensus 184 Avisai~~~~d~ 195 (211)
T PRK03512 184 AVVSAITQAADW 195 (211)
T ss_pred EEhhHhhCCCCH
Confidence 999998866543
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0025 Score=61.67 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=46.6
Q ss_pred HcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 296 RAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 296 ~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
-.|...|-+-... |.+ ++..-+.++..++..++|+|+.|||+|.+++.++. +.|||.|.+|..+..|+++
T Consensus 151 ~~g~~~iYLEaGS----Ga~-~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~-~aGAD~IVvGn~iee~~~~ 220 (230)
T PF01884_consen 151 YLGMPIIYLEAGS----GAY-GPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMA-EAGADTIVVGNAIEEDPDL 220 (230)
T ss_dssp HTT-SEEEEE--T----TSS-S-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHH-CTTSSEEEESCHHHHHH-H
T ss_pred HhCCCEEEEEeCC----CCC-CCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHH-HCCCCEEEECCEEEEcchH
Confidence 3678877773211 112 22222344444555699999999999999999999 8999999999999999873
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.025 Score=58.35 Aligned_cols=97 Identities=20% Similarity=0.332 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHhhhc---------cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC--CHHH
Q psy7343 255 DWPLLTNLVSSLRQAV---------QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA--SWEH 323 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~---------~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~--~~~~ 323 (487)
.++.-.+.++.+++.. ...|.+-+ + ..++..+.++.|.++|+|.|.|..-. |.. -.+.
T Consensus 71 ~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aav--g-~~~~~~er~~~L~~agvD~ivID~a~--------g~s~~~~~~ 139 (352)
T PF00478_consen 71 SIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAV--G-TRDDDFERAEALVEAGVDVIVIDSAH--------GHSEHVIDM 139 (352)
T ss_dssp CHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEE--E-SSTCHHHHHHHHHHTT-SEEEEE-SS--------TTSHHHHHH
T ss_pred CHHHHHHHHhhhccccccccccccccceEEEEe--c-CCHHHHHHHHHHHHcCCCEEEccccC--------ccHHHHHHH
Confidence 3555566666666532 23344444 2 22345777888888999999994221 112 2378
Q ss_pred HHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 324 ITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 324 i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
++++++.. ++|||+ |+|-|.+.++.++ +.|||+|-+|=|
T Consensus 140 ik~ik~~~~~~~via-GNV~T~e~a~~L~-~aGad~vkVGiG 179 (352)
T PF00478_consen 140 IKKIKKKFPDVPVIA-GNVVTYEGAKDLI-DAGADAVKVGIG 179 (352)
T ss_dssp HHHHHHHSTTSEEEE-EEE-SHHHHHHHH-HTT-SEEEESSS
T ss_pred HHHHHHhCCCceEEe-cccCCHHHHHHHH-HcCCCEEEEecc
Confidence 89999888 499997 8999999999999 799999998854
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.021 Score=56.19 Aligned_cols=173 Identities=20% Similarity=0.307 Sum_probs=81.7
Q ss_pred eccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHH-HHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccC-
Q psy7343 178 TPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSK-NLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQD- 254 (487)
Q Consensus 178 t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~-~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~- 254 (487)
-|+.++..+..+ ...+++.... +.||..=+.+.||- ++....+.+++. |.+|. |. |..-...|.++..|..
T Consensus 59 lpygnaN~iv~e--m~~eiLp~v~-~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~ 132 (268)
T PF09370_consen 59 LPYGNANEIVME--MAREILPVVK-DTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEET 132 (268)
T ss_dssp BTEEEHHHHHHH--HHHHHGGG-S-SS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHT
T ss_pred hcccCHhHHHHH--HHHhhhhhcc-CCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhc
Confidence 344455544433 2355554333 58999999988873 455566666665 66552 22 4332334444444421
Q ss_pred --ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEc-cccCCCCCCCCCCCH----HHHHHH
Q psy7343 255 --DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG-RTVDQRGMNTGLASW----EHITAV 327 (487)
Q Consensus 255 --d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vhg-Rt~~~~g~~~g~~~~----~~i~~i 327 (487)
-.+.=.++++..++. ++.-+.- ..+. +-++.+.++|+|.|.+|- .|....-+....... +.+.++
T Consensus 133 Gmgy~~EVemi~~A~~~-gl~T~~y------vf~~-e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i 204 (268)
T PF09370_consen 133 GMGYDREVEMIRKAHEK-GLFTTAY------VFNE-EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEI 204 (268)
T ss_dssp T--HHHHHHHHHHHHHT-T-EE--E------E-SH-HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-CCeeeee------ecCH-HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHH
Confidence 133334444444432 3221111 1233 445556689999999984 443322111111122 334444
Q ss_pred Hhh---C--C-CcEEEcCCCCCHHHHHHHHHhcC-CcEEEeccc
Q psy7343 328 RKA---L--T-IPVIANGNIQCLADVEACLAQTG-VAGVMTAEG 364 (487)
Q Consensus 328 ~~~---~--~-iPVi~nGgI~s~~da~~~l~~~G-ad~VmiGRa 364 (487)
.+. + + |-++..|-|.+++|++.+++.+. ++|..-|..
T Consensus 205 ~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss 248 (268)
T PF09370_consen 205 FDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASS 248 (268)
T ss_dssp HHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTT
T ss_pred HHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccc
Confidence 332 2 2 44567899999999999998875 999887764
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0091 Score=63.48 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHH-HHHcCCcEEEEEccccCCC--C----CCCCCCCHHHHHH
Q psy7343 255 DWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARM-LERAGCQLLAVHGRTVDQR--G----MNTGLASWEHITA 326 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~-le~~G~d~I~VhgRt~~~~--g----~~~g~~~~~~i~~ 326 (487)
.++.+.+++..+|+.. .-+|++|+- .....+.... ..++++|.|+|.|-..... + .+.|.+..-.+.+
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlv----a~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae 361 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLV----AEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAE 361 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEe----cccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHH
Confidence 4678888888898875 356999983 2233333333 7789999999966321100 0 0122221122333
Q ss_pred HHhh-----C--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 327 VRKA-----L--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 327 i~~~-----~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.+. + ++-|++.|++.|..|+...+ ..|||.|-+|++.|-
T Consensus 362 ~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~-aLGAd~v~~gTa~li 408 (485)
T COG0069 362 THQTLVLNGLRDKVKLIADGGLRTGADVAKAA-ALGADAVGFGTAALV 408 (485)
T ss_pred HHHHHHHcCCcceeEEEecCCccCHHHHHHHH-HhCcchhhhchHHHH
Confidence 3222 1 57789999999999999999 799999999998764
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.071 Score=53.73 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=95.1
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCC-CcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGC-PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVS 275 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~Gc-P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~ 275 (487)
..+.||++-+- | .++.+..+.++.++++ +.+|.|-=.. |. +.|..++..+.+.+...+-+++++++. +.++.
T Consensus 76 ~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK---~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~ 152 (292)
T PRK11320 76 ACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAK---RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFV 152 (292)
T ss_pred ccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc---ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeE
Confidence 34689999986 3 3888888888888776 6777764222 21 122222222234554444455555443 67788
Q ss_pred EEeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc---CCCCCHHHHH
Q psy7343 276 CKIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN---GNIQCLADVE 348 (487)
Q Consensus 276 vKiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n---GgI~s~~da~ 348 (487)
++-|.. .+.++.++-++...++|+|.|.++|- .+.+.++++.+.++.|+.+| |+-.-.-+..
T Consensus 153 IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~-----------~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~ 221 (292)
T PRK11320 153 IMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM-----------TELEMYRRFADAVKVPILANITEFGATPLFTTE 221 (292)
T ss_pred EEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC-----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHH
Confidence 888863 23456667778888999999999642 34678889998899998543 3321112344
Q ss_pred HHHHhcCCcEEEeccc
Q psy7343 349 ACLAQTGVAGVMTAEG 364 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa 364 (487)
++- +.|+..|..|-.
T Consensus 222 ~L~-~lGv~~v~~~~~ 236 (292)
T PRK11320 222 ELA-SAGVAMVLYPLS 236 (292)
T ss_pred HHH-HcCCcEEEEChH
Confidence 444 679999998854
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.11 Score=47.67 Aligned_cols=194 Identities=17% Similarity=0.098 Sum_probs=95.6
Q ss_pred eEEecCCCCC---CHHHHHHHHHcCCCeEEccceeccccccCcHH--HHHHhhhCCCCCceeeeeccccCCCCCcccccc
Q psy7343 81 FILAPMVDAS---ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL--RQEILMSTPEDRPLIIQRTIFPRLGSPRFILAP 155 (487)
Q Consensus 81 ~~LAPMag~t---d~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~--~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lAp 155 (487)
+.+++|++-. ...+.+.+.+.|++++.++.......-..... ...... ...+.|+++|+... +......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~- 74 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVA-AETDLPLGVQLAIN----DAAAAVD- 74 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHH-hhcCCcEEEEEccC----Cchhhhh-
Confidence 3578888874 44555667777999988887665544322211 122222 23467899996432 1100000
Q ss_pred ccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEe
Q psy7343 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDI 234 (487)
Q Consensus 156 ma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~Idi 234 (487)
.....+...|++...-........-...+...++.+.. .+.|+++++...+... .. . +.+. .|.|.+
T Consensus 75 -------~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~--~~-~-~~~~g~d~i~~ 142 (200)
T cd04722 75 -------IAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELA--AA-A-AEEAGVDEVGL 142 (200)
T ss_pred -------HHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccc--hh-h-HHHcCCCEEEE
Confidence 00234566676553211111000000011122222222 3678999987433211 11 1 2333 677777
Q ss_pred ecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 235 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 235 N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
+.+-+... + . ..++. ....+..+++..++||++.+ .+.+..++.+.++. |+|+|++ ||
T Consensus 143 ~~~~~~~~---~--~---~~~~~-~~~~~~~~~~~~~~pi~~~G----Gi~~~~~~~~~~~~-Gad~v~v-gs 200 (200)
T cd04722 143 GNGGGGGG---G--R---DAVPI-ADLLLILAKRGSKVPVIAGG----GINDPEDAAEALAL-GADGVIV-GS 200 (200)
T ss_pred cCCcCCCC---C--c---cCchh-HHHHHHHHHhcCCCCEEEEC----CCCCHHHHHHHHHh-CCCEEEe-cC
Confidence 64432110 0 0 11111 12233345556789999987 55555666666664 9999998 64
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.015 Score=66.42 Aligned_cols=98 Identities=16% Similarity=0.275 Sum_probs=69.0
Q ss_pred cCCCCCCeeeeecc-------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc
Q psy7343 199 STPEDRPLIIQFCG-------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~g-------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~ 270 (487)
..+.+.||+++|.. .+.++..++++.+++. .|.|+++.|..... .+..++. .....+.+.+|+.+
T Consensus 614 ~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~------~~~~~~~~~ik~~~ 686 (765)
T PRK08255 614 VWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKD-EKPVYGR------MYQTPFADRIRNEA 686 (765)
T ss_pred hcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcC-CCCCcCc------cccHHHHHHHHHHc
Confidence 34557899999872 3567888999998877 89999987752111 1111111 11123445677788
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
++||++++ ++.+..++.+.+++.++|.|++ ||.
T Consensus 687 ~~pv~~~G----~i~~~~~a~~~l~~g~~D~v~~-gR~ 719 (765)
T PRK08255 687 GIATIAVG----AISEADHVNSIIAAGRADLCAL-ARP 719 (765)
T ss_pred CCEEEEeC----CCCCHHHHHHHHHcCCcceeeE-cHH
Confidence 99999998 6667888888888888999999 885
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.091 Score=53.00 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=91.7
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCC-CcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGC-PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVS 275 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~Gc-P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~ 275 (487)
..+.||++-+- | .++.+..+.++.++++ ..+|.|.=.. | .+.|..++..+-+.+...+-+++++++. +.++.
T Consensus 75 ~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~p---K~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~ 151 (294)
T TIGR02319 75 AVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNP---KRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFT 151 (294)
T ss_pred ccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCc---cccCCCCCccccCHHHHHHHHHHHHHhccCCCeE
Confidence 45789999986 3 2444466777777776 7777775332 2 1222222222224444444444455433 45688
Q ss_pred EEeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE---EcCCCCCHHHHH
Q psy7343 276 CKIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI---ANGNIQCLADVE 348 (487)
Q Consensus 276 vKiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi---~nGgI~s~~da~ 348 (487)
++.|.. .+.++.++-++...++|+|.|.++| ..+.+.++++.+.++.|+. ..|+-.-.-.+.
T Consensus 152 I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~-----------~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~ 220 (294)
T TIGR02319 152 IIARTDARESFGLDEAIRRSREYVAAGADCIFLEA-----------MLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTK 220 (294)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC-----------CCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHH
Confidence 888863 2345667777888899999999954 2345778899988888873 334322222455
Q ss_pred HHHHhcCCcEEEeccc
Q psy7343 349 ACLAQTGVAGVMTAEG 364 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa 364 (487)
++- +.|++.|..+-.
T Consensus 221 eL~-~lG~~~v~~~~~ 235 (294)
T TIGR02319 221 ELE-SIGYNLAIYPLS 235 (294)
T ss_pred HHH-HcCCcEEEEcHH
Confidence 555 679999988853
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.024 Score=53.88 Aligned_cols=161 Identities=20% Similarity=0.291 Sum_probs=104.9
Q ss_pred cChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEe-ecCCCcceeeccCccccccCChHHHHHHHHHH
Q psy7343 188 ADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDI-NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266 (487)
Q Consensus 188 ~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~Idi-N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v 266 (487)
.|++..+... ...+.|+-|. +-+|+.|..+.+ ...|.||| |..| . -.+|+ .-..+.+.++.++.
T Consensus 48 adp~LV~~~~--~~s~lPICVS--aVep~~f~~aV~---AGAdliEIGNfDs-F--Y~qGr-----~f~a~eVL~Lt~~t 112 (242)
T PF04481_consen 48 ADPELVKLAK--SLSNLPICVS--AVEPELFVAAVK---AGADLIEIGNFDS-F--YAQGR-----RFSAEEVLALTRET 112 (242)
T ss_pred CCHHHHHHHH--HhCCCCeEee--cCCHHHHHHHHH---hCCCEEEecchHH-H--HhcCC-----eecHHHHHHHHHHH
Confidence 4665554332 2335777765 347887776653 34677777 3333 1 12222 12456777888888
Q ss_pred hhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC--CCCCCC-----CCHHHHHHHHhhCCCcEEEc
Q psy7343 267 RQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR--GMNTGL-----ASWEHITAVRKALTIPVIAN 338 (487)
Q Consensus 267 ~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~--g~~~g~-----~~~~~i~~i~~~~~iPVi~n 338 (487)
|+.+ ++++++.+.-.-..++-.+++..|++.|+|.|.--|.+.... ++..|. +.+.....+.+.+++||+..
T Consensus 113 R~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcA 192 (242)
T PF04481_consen 113 RSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCA 192 (242)
T ss_pred HHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEec
Confidence 8766 688888875444556788999999999999998766554321 111111 23455667778899999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 339 GNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 339 GgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
.|+.+..--.. + ..||.||.||.+.
T Consensus 193 SGlS~vT~PmA-i-aaGAsGVGVGSav 217 (242)
T PF04481_consen 193 SGLSAVTAPMA-I-AAGASGVGVGSAV 217 (242)
T ss_pred cCcchhhHHHH-H-HcCCcccchhHHh
Confidence 99987664443 3 4899999999863
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.25 Score=49.06 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=64.2
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccc----cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVN----KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP 334 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~----~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP 334 (487)
+.+++++.. ..++|+.+=...+.++. ...-.++...+.|+|.|-+ .|++ +.++++.+...+|
T Consensus 129 l~~v~~ea~-~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~---------~y~~----~~f~~vv~a~~vP 194 (264)
T PRK08227 129 IIQLVDAGL-RYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKT---------YYVE----EGFERITAGCPVP 194 (264)
T ss_pred HHHHHHHHH-HhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEec---------CCCH----HHHHHHHHcCCCc
Confidence 444444332 45899988322233322 2445667788999999977 1443 6788888889999
Q ss_pred EEEcCCCCC-HHHHHHHHH---hcCCcEEEeccccccC
Q psy7343 335 VIANGNIQC-LADVEACLA---QTGVAGVMTAEGNLYN 368 (487)
Q Consensus 335 Vi~nGgI~s-~~da~~~l~---~~Gad~VmiGRa~l~~ 368 (487)
|+..||=.+ .+++.++.+ +.||.||.+||=....
T Consensus 195 VviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 195 IVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 998888774 444544432 3799999999965555
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.04 Score=53.94 Aligned_cols=144 Identities=22% Similarity=0.256 Sum_probs=91.6
Q ss_pred CCCCeeeeec---cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEE
Q psy7343 202 EDRPLIIQFC---GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSC 276 (487)
Q Consensus 202 ~~~Pv~Vqi~---g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~v 276 (487)
.+.||++-+. |+++.+..+.++.++++ ..+|+|.=. +++..+..+. +.+...+=+++++++. +..+.+
T Consensus 68 ~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq------~~~~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I 140 (238)
T PF13714_consen 68 VSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQ------RCGHGGKQLV-SPEEMVAKIRAAVDARRDPDFVI 140 (238)
T ss_dssp SSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB------STTTSTT-B---HHHHHHHHHHHHHHHSSTTSEE
T ss_pred hcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeecc------ccCCCCCcee-CHHHHHHHHHHHHHhccCCeEEE
Confidence 3689999986 45599999999988776 777777633 1122234444 4555444455555433 344667
Q ss_pred Eeeccc------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 277 KIRIYQ------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 277 KiR~~~------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
+-|..- +.++..+-++...++|+|.|.++|- .+-+.++++.+.++.|+..+-+ ...-++.++
T Consensus 141 ~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~-----------~~~~~i~~~~~~~~~Pl~v~~~-~~~~~~~eL 208 (238)
T PF13714_consen 141 IARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGL-----------QSEEEIERIVKAVDGPLNVNPG-PGTLSAEEL 208 (238)
T ss_dssp EEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTS-----------SSHHHHHHHHHHHSSEEEEETT-SSSS-HHHH
T ss_pred EEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCC-----------CCHHHHHHHHHhcCCCEEEEcC-CCCCCHHHH
Confidence 666532 3356667777888999999999543 3455688888888999887653 222455666
Q ss_pred HHhcCCcEEEecccc
Q psy7343 351 LAQTGVAGVMTAEGN 365 (487)
Q Consensus 351 l~~~Gad~VmiGRa~ 365 (487)
. +.|+..|..|-.+
T Consensus 209 ~-~lGv~~v~~~~~~ 222 (238)
T PF13714_consen 209 A-ELGVKRVSYGNSL 222 (238)
T ss_dssp H-HTTESEEEETSHH
T ss_pred H-HCCCcEEEEcHHH
Confidence 5 6899999988543
|
... |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.021 Score=54.85 Aligned_cols=90 Identities=22% Similarity=0.254 Sum_probs=67.5
Q ss_pred cCcEEEEeec-cc------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCC
Q psy7343 271 QVPVSCKIRI-YQ------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC 343 (487)
Q Consensus 271 ~iPV~vKiR~-~~------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s 343 (487)
+++|++-+.. .+ +..++.++++.+++.|+++|.+..-... +. ...+.++.+++.+++||+.-|+|.+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~----~~--g~~~~~~~i~~~v~iPi~~~~~i~~ 83 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKY----FQ--GSLEDLRAVREAVSLPVLRKDFIID 83 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccc----cC--CCHHHHHHHHHhcCCCEEECCeecC
Confidence 3677774432 11 2357999999999999999988432111 21 2457888888888999999899999
Q ss_pred HHHHHHHHHhcCCcEEEecccccc
Q psy7343 344 LADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 344 ~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.++++.+. +.|||+|.++...+.
T Consensus 84 ~~~v~~~~-~~Gad~v~l~~~~~~ 106 (217)
T cd00331 84 PYQIYEAR-AAGADAVLLIVAALD 106 (217)
T ss_pred HHHHHHHH-HcCCCEEEEeeccCC
Confidence 98898888 799999999876554
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.14 Score=51.72 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCC---CCCCHHHHHHHHhhC-CCcEEEcCC--CCCHHHHHHHHHhcCCcEE
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNT---GLASWEHITAVRKAL-TIPVIANGN--IQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~---g~~~~~~i~~i~~~~-~iPVi~nGg--I~s~~da~~~l~~~Gad~V 359 (487)
+.+++.+ +.++|+|.+.+.=.+.-. .|. ...+++.++++++.+ ++|+++-|| |. .+++.+++ +.|++.|
T Consensus 155 ~peea~~-f~~tgvD~LAv~iG~vHG--~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~e~~~~~i-~~Gi~Ki 229 (293)
T PRK07315 155 PIEDAKA-MVETGIDFLAAGIGNIHG--PYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-DDQIQEAI-KLGVAKV 229 (293)
T ss_pred CHHHHHH-HHHcCCCEEeeccccccc--cCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCC-HHHHHHHH-HcCCCEE
Confidence 4555444 448999999872111111 122 236789999999999 599999988 74 57889998 7999999
Q ss_pred Eecccccc
Q psy7343 360 MTAEGNLY 367 (487)
Q Consensus 360 miGRa~l~ 367 (487)
-+++.+..
T Consensus 230 Nv~T~i~~ 237 (293)
T PRK07315 230 NVNTECQI 237 (293)
T ss_pred EEccHHHH
Confidence 99998775
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.044 Score=55.81 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=81.0
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++.+-- .+..+..+.+
T Consensus 27 D~~~l~~lv~~li~~--------Gv-~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~~a 96 (309)
T cd00952 27 DLDETARLVERLIAA--------GV-DGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIART 96 (309)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHHHH
Confidence 667777777766555 44 4455566667665445666667777666655 4899987621 2456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEE------cCCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIA------NGNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~------nGgI~s~~da~~~l 351 (487)
+.+++.|+|++++..-. ... .+.....++++.|.+.. ++||+. .|--.+++.+.++.
T Consensus 97 ~~A~~~Gad~vlv~~P~-y~~--~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 97 RALLDLGADGTMLGRPM-WLP--LDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHHHhCCCEEEECCCc-CCC--CCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 99999999999994321 000 11122357888888888 699873 24344566666665
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.021 Score=58.03 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=57.3
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCC--CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQ--RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~--~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+..+..+ +..+.+.|+|+|.+ |-.... ++. ..+..++.++++++..++||++-||| +.+++.+++ ++|+++|.
T Consensus 232 S~h~~~~-~~~a~~~~~dyi~~-gpvf~t~tk~~-~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~-~~g~~gva 306 (312)
T PRK08999 232 SCHDAEE-LARAQRLGVDFAVL-SPVQPTASHPG-AAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAR-EHGAQGIA 306 (312)
T ss_pred ecCCHHH-HHHHHhcCCCEEEE-CCCcCCCCCCC-CCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHH-HhCCCEEE
Confidence 3345555 44566789999999 532211 111 12335788999999999999999999 899999998 78999999
Q ss_pred ecccc
Q psy7343 361 TAEGN 365 (487)
Q Consensus 361 iGRa~ 365 (487)
+-+++
T Consensus 307 ~i~~~ 311 (312)
T PRK08999 307 GIRGL 311 (312)
T ss_pred EEEEe
Confidence 88765
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.025 Score=57.71 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=68.1
Q ss_pred CCCCCCeeeeecc-------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc
Q psy7343 200 TPEDRPLIIQFCG-------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271 (487)
Q Consensus 200 ~~~~~Pv~Vqi~g-------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~ 271 (487)
...+.||++++.. .+.++..++++.+++. .|.|++..|......... ... ......-.+.++.+++.++
T Consensus 205 ~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~--~~~-~~~~~~~~~~~~~ir~~~~ 281 (327)
T cd02803 205 VGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPII--PPP-YVPEGYFLELAEKIKKAVK 281 (327)
T ss_pred cCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc--CCC-CCCcchhHHHHHHHHHHCC
Confidence 3456799999873 3567888889988877 899999877632111100 000 0011222345556777789
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
+||++.+ ++.+..++.+.+++.|+|.|++ ||.
T Consensus 282 iPVi~~G----gi~t~~~a~~~l~~g~aD~V~i-gR~ 313 (327)
T cd02803 282 IPVIAVG----GIRDPEVAEEILAEGKADLVAL-GRA 313 (327)
T ss_pred CCEEEeC----CCCCHHHHHHHHHCCCCCeeee-cHH
Confidence 9999997 5667888888888779999999 884
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.044 Score=56.25 Aligned_cols=108 Identities=23% Similarity=0.227 Sum_probs=73.4
Q ss_pred cCChHHHHHHHHHHhhhcc-CcEEEEeecccc-cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH----HHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQD-VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW----EHITA 326 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d-~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~ 326 (487)
..+++.. +-++.+++..+ .|+++|+-.... ..+..++.+..+..++|++.+|--.........+..++ +.++.
T Consensus 94 ~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~ 172 (326)
T cd02811 94 LEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEE 172 (326)
T ss_pred ccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHH
Confidence 3467765 44556676664 999999844211 12567778888888999999974221111112233345 67888
Q ss_pred HHhhCCCcEEE--cCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 327 VRKALTIPVIA--NGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 327 i~~~~~iPVi~--nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+++.+++||+. +|.-.+.++++.+. +.|+|+|.++
T Consensus 173 l~~~~~vPVivK~~g~g~s~~~a~~l~-~~Gvd~I~vs 209 (326)
T cd02811 173 LVKALSVPVIVKEVGFGISRETAKRLA-DAGVKAIDVA 209 (326)
T ss_pred HHHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEEC
Confidence 88889999997 56667888887776 7999999985
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.045 Score=54.76 Aligned_cols=93 Identities=22% Similarity=0.207 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC--CcEE
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT--IPVI 336 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~--iPVi 336 (487)
+.+-++.+|+..+-...+-+ +..+.++ ++...+.|+|+|++ . ....+.++++++..+ +|+.
T Consensus 174 ~~~~v~~aR~~~~~~~~Igv----sv~tlee-a~~A~~~gaDyI~l-D-----------~~~~e~l~~~~~~~~~~i~i~ 236 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEV----ETETEEQ-VREAVAAGADIIMF-D-----------NRTPDEIREFVKLVPSAIVTE 236 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEE----EeCCHHH-HHHHHHcCCCEEEE-C-----------CCCHHHHHHHHHhcCCCceEE
Confidence 44555556666542222222 3445555 44456799999998 1 123467777777664 7778
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+.||| +.+.+.++. ++|+|++.+|.-...-|+
T Consensus 237 AiGGI-t~~ni~~~a-~~Gvd~IAvg~l~~sa~~ 268 (277)
T PRK08072 237 ASGGI-TLENLPAYG-GTGVDYISLGFLTHSVKA 268 (277)
T ss_pred EECCC-CHHHHHHHH-HcCCCEEEEChhhcCCcc
Confidence 99999 689999999 799999999975543343
|
|
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.062 Score=55.71 Aligned_cols=97 Identities=22% Similarity=0.171 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+++.-.+.++++++.++ +.+.+-.--+|+..+..++++.+++.+++.|-= + ....+++..+++++.++
T Consensus 168 ~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe--------P--~~~~d~~~~~~l~~~~~ 237 (355)
T cd03321 168 TADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWIEE--------P--TLQHDYEGHARIASALR 237 (355)
T ss_pred ChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCCCEEEC--------C--CCCcCHHHHHHHHHhcC
Confidence 34444566777887763 445543333567778889999999999887752 1 12347889999999999
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+||.+...+.+..++.++++..++|.+++
T Consensus 238 ipia~~E~~~~~~~~~~~i~~~~~d~i~~ 266 (355)
T cd03321 238 TPVQMGENWLGPEEMFKALSAGACDLVMP 266 (355)
T ss_pred CCEEEcCCCcCHHHHHHHHHhCCCCeEec
Confidence 99999888999999999997677887764
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.27 E-value=0.037 Score=51.82 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=57.6
Q ss_pred HHHHhhhccCcEEEEeecc-cc----cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE
Q psy7343 263 VSSLRQAVQVPVSCKIRIY-QD----VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337 (487)
Q Consensus 263 v~~v~~~~~iPV~vKiR~~-~d----~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~ 337 (487)
++++++.+++||+.=+.-. .| +.-+.+-++.+.++|+|.|.+.+ |...++ ....++++++++.. .++++
T Consensus 24 I~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa-T~R~Rp----~~l~~li~~i~~~~-~l~MA 97 (192)
T PF04131_consen 24 IRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA-TDRPRP----ETLEELIREIKEKY-QLVMA 97 (192)
T ss_dssp HHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE--SSSS-S----S-HHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec-CCCCCC----cCHHHHHHHHHHhC-cEEee
Confidence 3457888999999844321 11 22356777888899999999954 333332 34568899999987 65655
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
||.|.+++.... +.|+|.|.-
T Consensus 98 --Dist~ee~~~A~-~~G~D~I~T 118 (192)
T PF04131_consen 98 --DISTLEEAINAA-ELGFDIIGT 118 (192)
T ss_dssp --E-SSHHHHHHHH-HTT-SEEE-
T ss_pred --ecCCHHHHHHHH-HcCCCEEEc
Confidence 999999999998 789998753
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.06 Score=54.40 Aligned_cols=125 Identities=17% Similarity=0.190 Sum_probs=82.2
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++.+- .+..+..+.+
T Consensus 24 D~~~l~~li~~l~~~--------Gv-~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ai~~a 92 (296)
T TIGR03249 24 DEAAYRENIEWLLGY--------GL-EALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSDAIEIA 92 (296)
T ss_pred CHHHHHHHHHHHHhc--------CC-CEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHHHHHHH
Confidence 667777777766555 44 4455566667665445666666776666554 488998873 3566888999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-Ec--CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-AN--GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-~n--GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..-.. .. .+.....++++++.+.+++||+ +| |--.+++.+.++.+
T Consensus 93 ~~a~~~Gadav~~~pP~y-~~--~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 93 RLAEKAGADGYLLLPPYL-IN--GEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHhCCCEEEECCCCC-CC--CCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999943210 00 1111234778888888899975 44 33446777777764
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.044 Score=56.61 Aligned_cols=46 Identities=17% Similarity=0.440 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+..+|+.++.+++..++|||. .||.+.+|++++. +.|+|+|.++-.
T Consensus 208 ~~ltW~dl~wlr~~~~~Pviv-KgV~~~~dA~~a~-~~Gvd~I~Vsnh 253 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAI-QAGAAGIIVSNH 253 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHH-hcCCCEEEECCC
Confidence 345799999999999999998 6788999999999 799999988643
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.14 Score=50.82 Aligned_cols=117 Identities=16% Similarity=0.195 Sum_probs=77.0
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC-CCCCCCCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-GMNTGLASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~~~~~~i~~i 327 (487)
|+....+.+++..+ . .++.||++|--...+.++...+++.+.+.|.+-|++-=|+.... +......|+..+..+
T Consensus 115 ~s~~~~n~~LL~~~----a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~l 189 (260)
T TIGR01361 115 GARNMQNFELLKEV----G-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVL 189 (260)
T ss_pred CcccccCHHHHHHH----h-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHH
Confidence 44445677766553 2 35899999975555677889999999999997676633422221 112334688999999
Q ss_pred HhhCCCcEEEcCCC-CC-----HHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 328 RKALTIPVIANGNI-QC-----LADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 328 ~~~~~iPVi~nGgI-~s-----~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++..+.||+++-+- .. ...+.... ..||||++|=+-+--|-.+
T Consensus 190 k~~~~~pV~~ds~Hs~G~r~~~~~~~~aAv-a~Ga~gl~iE~H~t~d~a~ 238 (260)
T TIGR01361 190 KKETHLPIIVDPSHAAGRRDLVIPLAKAAI-AAGADGLMIEVHPDPEKAL 238 (260)
T ss_pred HHhhCCCEEEcCCCCCCccchHHHHHHHHH-HcCCCEEEEEeCCCccccC
Confidence 98889999993222 22 23334445 6899999988755444444
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.063 Score=54.49 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=80.4
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|.+..-..+.-.++++.+.+.+ ++||++.+- .+..+..+.+
T Consensus 26 D~~~l~~li~~l~~~--------Gv-~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~~i~~~ 94 (303)
T PRK03620 26 DEAAYREHLEWLAPY--------GA-AALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQAIEYA 94 (303)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHHHHHHH
Confidence 666777777766555 44 4455556567655445566666777666655 589998773 3667889999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-Ec--CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-AN--GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-~n--GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..-.. .. .+...-.++++.+.+.+++||+ +| |--.+++.+.++.
T Consensus 95 ~~a~~~Gadav~~~pP~y-~~--~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 95 QAAERAGADGILLLPPYL-TE--APQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHHhCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999933210 00 1111234778888888899976 43 3233666666665
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.049 Score=54.56 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=80.6
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++-+.- .+..+..+.+
T Consensus 19 D~~~~~~~i~~l~~~--------Gv-~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~~a 88 (284)
T cd00950 19 DFDALERLIEFQIEN--------GT-DGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIELT 88 (284)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHHHH
Confidence 667777777766555 33 3344445456554334555666666666655 4788876521 1456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l~ 352 (487)
+.+++.|+|+|++..-.. .. .+...-.++++++.+..++||+. .|-..|.+.+.++.+
T Consensus 89 ~~a~~~G~d~v~~~~P~~-~~--~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 89 KRAEKAGADAALVVTPYY-NK--PSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred HHHHHcCCCEEEEccccc-CC--CCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence 999999999999943211 00 11122347788888888999873 466677888888774
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.11 Score=54.16 Aligned_cols=124 Identities=12% Similarity=0.052 Sum_probs=85.7
Q ss_pred CHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
+++++.+.++.+.+ .|+.|.|..|- + .+++.-.+.++++++.+ ++++.+-..-+++.++..++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~----------~----~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~ 208 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWG----------P----GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRL 208 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC----------c----hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHH
Confidence 67777776665544 46666553211 1 11445566777888877 35565544335677788899
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCC-HHHHHHHHHhcCCcEEEe
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC-LADVEACLAQTGVAGVMT 361 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s-~~da~~~l~~~Gad~Vmi 361 (487)
++.+++.++.++.= + . ...+++..+++++.+++||.+...+.+ .+++.++++...+|.|++
T Consensus 209 ~~~l~~~~l~~iEe--------P-~-~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 209 GRALEELGFFWYED--------P-L-REASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred HHHhhhcCCCeEeC--------C-C-CchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 99999988776631 1 1 223678888999999999998888998 999999997767788765
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.39 Score=47.92 Aligned_cols=147 Identities=21% Similarity=0.265 Sum_probs=92.6
Q ss_pred CCCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecC-CCcceeeccC-ccccccCChHHHHHHHHHHhhhc-cCc
Q psy7343 200 TPEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIG-CPQMVAKRGH-YGAYLQDDWPLLTNLVSSLRQAV-QVP 273 (487)
Q Consensus 200 ~~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~G-cP~~i~~~gr-~G~~l~~d~~~i~eiv~~v~~~~-~iP 273 (487)
...+.||+|-+- | .++.+..+.++.++++ ..+|.|-=- .|. +.|+ -|..+ -+.+...+-+++++++. +.+
T Consensus 75 ~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk---~cgh~~gk~l-~~~~e~v~rIkAa~~a~~~~~ 150 (289)
T COG2513 75 DAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPK---RCGHLPGKEL-VSIDEMVDRIKAAVEARRDPD 150 (289)
T ss_pred hhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccch---hcCCCCCCCc-CCHHHHHHHHHHHHHhccCCC
Confidence 456899999986 2 2488888888877776 555554310 011 1121 12333 34555555555555554 567
Q ss_pred EEEEeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc---CCCCCHHH
Q psy7343 274 VSCKIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN---GNIQCLAD 346 (487)
Q Consensus 274 V~vKiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n---GgI~s~~d 346 (487)
+++.-|.. ...++.++-++...++|+|+|-.++. .+.+.++++.+.+++|+.+| ++-+-.-+
T Consensus 151 fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al-----------~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~ 219 (289)
T COG2513 151 FVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEAL-----------TDLEEIRAFAEAVPVPLPANITEFGKTPLLT 219 (289)
T ss_pred eEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccC-----------CCHHHHHHHHHhcCCCeeeEeeccCCCCCcC
Confidence 88877762 23467778888899999999988554 24678999999999777665 22221223
Q ss_pred HHHHHHhcCCcEEEec
Q psy7343 347 VEACLAQTGVAGVMTA 362 (487)
Q Consensus 347 a~~~l~~~Gad~VmiG 362 (487)
+.++- +.|++.|..|
T Consensus 220 ~~~L~-~~Gv~~V~~~ 234 (289)
T COG2513 220 VAELA-ELGVKRVSYG 234 (289)
T ss_pred HHHHH-hcCceEEEEC
Confidence 33333 7899999877
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.078 Score=52.09 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=91.8
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
....||-.|=|--|+-+..++...=.++ .-... +. -+.+.+.++++... ..+.-+.+-+
T Consensus 105 ~v~~PvL~KDFiiD~yQI~~Ar~~GADa-----------vLLI~-----~~--L~~~~l~el~~~A~-~LGm~~LVEV-- 163 (254)
T COG0134 105 AVDLPVLRKDFIIDPYQIYEARAAGADA-----------VLLIV-----AA--LDDEQLEELVDRAH-ELGMEVLVEV-- 163 (254)
T ss_pred hcCCCeeeccCCCCHHHHHHHHHcCccc-----------HHHHH-----Hh--cCHHHHHHHHHHHH-HcCCeeEEEE--
Confidence 4467888886655666555443221111 11111 11 13455677666544 4577777754
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
.+..++.+.+. .|++-|=|-.|.-.. -..+.+...++...+ +.-+|.-+||.|++|+.++. ..|+|+
T Consensus 164 ----h~~eEl~rAl~-~ga~iIGINnRdL~t-----f~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~-~~ga~a 232 (254)
T COG0134 164 ----HNEEELERALK-LGAKIIGINNRDLTT-----LEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLA-KAGADA 232 (254)
T ss_pred ----CCHHHHHHHHh-CCCCEEEEeCCCcch-----heecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHH-HcCCCE
Confidence 34555555555 999999885563221 234667777777766 47788899999999999998 799999
Q ss_pred EEeccccccCccc
Q psy7343 359 VMTAEGNLYNPAL 371 (487)
Q Consensus 359 VmiGRa~l~~P~l 371 (487)
+.||.++|.++..
T Consensus 233 ~LVG~slM~~~~~ 245 (254)
T COG0134 233 FLVGEALMRADDP 245 (254)
T ss_pred EEecHHHhcCCCH
Confidence 9999999999876
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.072 Score=54.49 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh-----
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK----- 329 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~----- 329 (487)
+.+.+.++++.. +.++.-+.+-+ .+..|+-+.+...|++.|-|-.|.-.. -..|.+...++..
T Consensus 215 ~~~~L~~l~~~A-~~LGme~LVEV------H~~~ElerAl~~~ga~iIGINNRdL~T-----f~vDl~~t~~L~~~~~~~ 282 (338)
T PLN02460 215 PDLDIKYMLKIC-KSLGMAALIEV------HDEREMDRVLGIEGVELIGINNRSLET-----FEVDISNTKKLLEGERGE 282 (338)
T ss_pred CHHHHHHHHHHH-HHcCCeEEEEe------CCHHHHHHHHhcCCCCEEEEeCCCCCc-----ceECHHHHHHHhhhcccc
Confidence 355667766644 35677777765 244555555543499999997774322 2346676777766
Q ss_pred hC---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 330 AL---TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 330 ~~---~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.+ ++-+++-+||.|++|+..+. ..|+|+|.||.+++..|+.
T Consensus 283 ~i~~~~~~~VsESGI~t~~Dv~~l~-~~GadAvLVGEsLMr~~dp 326 (338)
T PLN02460 283 QIREKGIIVVGESGLFTPDDVAYVQ-NAGVKAVLVGESLVKQDDP 326 (338)
T ss_pred ccCCCCeEEEECCCCCCHHHHHHHH-HCCCCEEEECHHHhCCCCH
Confidence 22 34578889999999999998 7999999999999999875
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.034 Score=58.06 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=79.2
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeecc---------CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCcccc
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFCG---------NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g---------~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~ 251 (487)
.+.+......++++ ....+.+|.++|.. .+.++..++++.+++..|.+++..|.........++
T Consensus 195 slenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~--- 271 (370)
T cd02929 195 SLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRF--- 271 (370)
T ss_pred ChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecCCCcccccccccc---
Confidence 34444445555554 23345567766542 246777788888887789999988853211111111
Q ss_pred ccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh
Q psy7343 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330 (487)
Q Consensus 252 l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~ 330 (487)
. ......++.+.+++.+++||++.+ ++.+..+..+.+++.++|.|++ ||... ++-+++.++++.
T Consensus 272 ~--~~~~~~~~~~~ik~~~~~pvi~~G----~i~~~~~~~~~l~~g~~D~V~~-gR~~l--------adP~l~~k~~~g 335 (370)
T cd02929 272 Y--PEGHQEPYIKFVKQVTSKPVVGVG----RFTSPDKMVEVVKSGILDLIGA-ARPSI--------ADPFLPKKIREG 335 (370)
T ss_pred C--CccccHHHHHHHHHHCCCCEEEeC----CCCCHHHHHHHHHcCCCCeeee-chHhh--------hCchHHHHHHcC
Confidence 0 111123455667888899999997 5557777888888888999999 88422 233557777653
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.058 Score=56.04 Aligned_cols=44 Identities=23% Similarity=0.497 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
...+|+.++.+++..+.||+. .||.+.+|++.+. +.|+|+|.+.
T Consensus 208 ~~~tW~~i~~lr~~~~~Pviv-KgV~~~~dA~~a~-~~GvD~I~vs 251 (364)
T PLN02535 208 ASLSWKDIEWLRSITNLPILI-KGVLTREDAIKAV-EVGVAGIIVS 251 (364)
T ss_pred CCCCHHHHHHHHhccCCCEEE-ecCCCHHHHHHHH-hcCCCEEEEe
Confidence 345799999999999999998 7899999999998 7999999875
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.061 Score=54.00 Aligned_cols=126 Identities=15% Similarity=0.204 Sum_probs=78.9
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++-+-- .+..+..+.+
T Consensus 17 D~~~~~~~i~~l~~~--------Gv-~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~~i~~a 86 (285)
T TIGR00674 17 DFAALEKLIDFQIEN--------GT-DAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEEAISLT 86 (285)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHHHHHHH
Confidence 666777777665554 44 4444555566654334555555666555544 4788876511 1445788899
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l~ 352 (487)
+.+++.|+|+|++..-... . .+...-.++++.+.+.+++||+. .|--.+++.++++.+
T Consensus 87 ~~a~~~Gad~v~v~pP~y~-~--~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 87 KFAEDVGADGFLVVTPYYN-K--PTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHHHHcCCCEEEEcCCcCC-C--CCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 9999999999999432110 0 11112347788888888999873 465667887877763
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.049 Score=51.97 Aligned_cols=144 Identities=19% Similarity=0.273 Sum_probs=84.3
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEE--EeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGI--DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~I--diN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
++..|...|..++.+..+.++++ .|.+ |+-=|+ +--.+.-.++ +++++++.+++|+-+-+
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~---------fvpn~~~g~~----~i~~i~~~~~~~~DvHL---- 64 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGH---------FVPNLTFGPD----IIKAIRKITDLPLDVHL---- 64 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSS---------SSSSB-B-HH----HHHHHHTTSSSEEEEEE----
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccc---------cCCcccCCHH----HHHHHhhcCCCcEEEEe----
Confidence 45566666777777777777665 5543 333232 1100101233 44556777778888866
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccC-------------------------------------------CCCCCCCCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVD-------------------------------------------QRGMNTGLA 319 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~-------------------------------------------~~g~~~g~~ 319 (487)
=+.+..++.+.+.++|++.|++|-.+.. -.+++.|..
T Consensus 65 Mv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~ 144 (201)
T PF00834_consen 65 MVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQK 144 (201)
T ss_dssp ESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB-
T ss_pred eeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCccc
Confidence 3445667777788888888888764310 013344443
Q ss_pred ----CHHHHHHHHhh-----CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 320 ----SWEHITAVRKA-----LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 320 ----~~~~i~~i~~~-----~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.++.++++++. .++.|..-|||+. +.+.++. +.|||.+.+|+++..+
T Consensus 145 f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~-~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLV-EAGADIFVAGSAIFKA 200 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHH-HHT--EEEESHHHHTS
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHH-HcCCCEEEECHHHhCC
Confidence 23555555543 3588999999975 5777887 7899999999987653
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.071 Score=55.81 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=69.2
Q ss_pred HHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEE-----EccccCCCCCCCCCCCHHHH----HHHHhhCC
Q psy7343 263 VSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV-----HGRTVDQRGMNTGLASWEHI----TAVRKALT 332 (487)
Q Consensus 263 v~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V-----hgRt~~~~g~~~g~~~~~~i----~~i~~~~~ 332 (487)
+..+++.. ++||++.+--+.+.+++.++++.++++|+|+|.+ |+-.-...+... ..+.+.+ +.+++.++
T Consensus 104 i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~-gq~~e~~~~i~~~Vk~~~~ 182 (385)
T PLN02495 104 FKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAV-GQDCDLLEEVCGWINAKAT 182 (385)
T ss_pred HHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhh-ccCHHHHHHHHHHHHHhhc
Confidence 44566565 6899999743346678999999999999999988 211000111000 1234444 55577778
Q ss_pred CcEEE--cCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 333 IPVIA--NGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 333 iPVi~--nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+||++ +-++.+..++.+.+.+.|||+|.+---+.
T Consensus 183 iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 183 VPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred CceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 99884 67788888888877789999998754443
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.34 Score=48.70 Aligned_cols=144 Identities=16% Similarity=0.249 Sum_probs=91.0
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. |.+.+...++ ++. |. ..+-..+. .-.+..|-+...++++..+ ..+++|-+-+ ++
T Consensus 77 ~vPV~lHLDHg~~~e~i~~a---i~~---------Gf-tSVM~DgS-~l~~eeNi~~T~~vve~Ah-~~gv~VEaElG~v 141 (286)
T PRK08610 77 TIPVAIHLDHGSSFEKCKEA---IDA---------GF-TSVMIDAS-HSPFEENVATTKKVVEYAH-EKGVSVEAELGTV 141 (286)
T ss_pred CCCEEEECCCCCCHHHHHHH---HHc---------CC-CEEEEeCC-CCCHHHHHHHHHHHHHHHH-HcCCEEEEEEecc
Confidence 369999987 5555444332 222 33 22333221 1123455666777776544 4477776643 22
Q ss_pred cc--c--------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC--CCHHHHHHHHhhCCCcEEEcCCCCCH-HHH
Q psy7343 281 YQ--D--------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL--ASWEHITAVRKALTIPVIANGNIQCL-ADV 347 (487)
Q Consensus 281 ~~--d--------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~--~~~~~i~~i~~~~~iPVi~nGgI~s~-~da 347 (487)
++ | ..++++..+.++++|+|.+.|.-.|..+. |.+. -+++.+++|++.+++|++.-||=..+ +++
T Consensus 142 gg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~--Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~ 219 (286)
T PRK08610 142 GGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGP--YKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDI 219 (286)
T ss_pred CCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccc--cCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHH
Confidence 21 1 24678888888999999998843333332 5443 47899999999999999988777666 567
Q ss_pred HHHHHhcCCcEEEeccc
Q psy7343 348 EACLAQTGVAGVMTAEG 364 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa 364 (487)
.+++ ..|+.-|=+++.
T Consensus 220 ~~ai-~~GI~KiNi~T~ 235 (286)
T PRK08610 220 QKAI-PFGTAKINVNTE 235 (286)
T ss_pred HHHH-HCCCeEEEeccH
Confidence 7777 688887777753
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.28 Score=49.23 Aligned_cols=141 Identities=18% Similarity=0.300 Sum_probs=85.7
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccc--cCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
..||.+.+. |.+.+...++. +..|+- +...+ +.+ ..+-+...++++..+ ..+++|-+.+-
T Consensus 68 ~vPV~lHLDHg~~~e~i~~ai---~~Gf~S----------VM~D~---S~l~~eeNi~~t~~vv~~a~-~~gv~vE~ElG 130 (283)
T PRK08185 68 PVPFVIHLDHGATIEDVMRAI---RCGFTS----------VMIDG---SLLPYEENVALTKEVVELAH-KVGVSVEGELG 130 (283)
T ss_pred CCCEEEECCCCCCHHHHHHHH---HcCCCE----------EEEeC---CCCCHHHHHHHHHHHHHHHH-HcCCeEEEEEe
Confidence 468888887 55555444333 222222 22222 222 234445555554333 34666655432
Q ss_pred -ccc---c---------cccHHHHHHHHHHcCCcEEEE-----EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCC
Q psy7343 280 -IYQ---D---------VNKTVEYARMLERAGCQLLAV-----HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNI 341 (487)
Q Consensus 280 -~~~---d---------~~~~~e~a~~le~~G~d~I~V-----hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI 341 (487)
++. + ..+..+..+..+++|+|.+.+ ||--... ....-+++.++++++.+++|++.-||+
T Consensus 131 ~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~---~kp~L~~e~l~~I~~~~~iPLVlHGgs 207 (283)
T PRK08185 131 TIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKD---KKPELQMDLLKEINERVDIPLVLHGGS 207 (283)
T ss_pred eccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCC---CCCCcCHHHHHHHHHhhCCCEEEECCC
Confidence 221 1 125677778888899999999 6542221 012246899999999999999999999
Q ss_pred CCHH-HHHHHHHhcCCcEEEeccc
Q psy7343 342 QCLA-DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 342 ~s~~-da~~~l~~~Gad~VmiGRa 364 (487)
..++ ++++++ ..|+.-|=+++.
T Consensus 208 g~~~e~~~~ai-~~GI~KiNi~T~ 230 (283)
T PRK08185 208 ANPDAEIAESV-QLGVGKINISSD 230 (283)
T ss_pred CCCHHHHHHHH-HCCCeEEEeChH
Confidence 6665 567777 688888877763
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.2 Score=48.72 Aligned_cols=145 Identities=16% Similarity=0.252 Sum_probs=88.1
Q ss_pred eeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~ 285 (487)
+++.|...|...+.+-.+.+++..|.+.+..- .|.+- .+.-+-.++++.+++.+++|+.+-+ =+.
T Consensus 5 I~pSil~ad~~~l~~el~~l~~g~d~lH~DiM-------DG~FV----PN~tfg~~~i~~ir~~t~~~~DvHL----Mv~ 69 (229)
T PRK09722 5 ISPSLMCMDLLKFKEQIEFLNSKADYFHIDIM-------DGHFV----PNLTLSPFFVSQVKKLASKPLDVHL----MVT 69 (229)
T ss_pred EEeehhhcCHHHHHHHHHHHHhCCCEEEEecc-------cCccC----CCcccCHHHHHHHHhcCCCCeEEEE----Eec
Confidence 56667666777777666666555555443321 11111 1111112345556666677877765 445
Q ss_pred cHHHHHHHHHHcCCcEEEEEcccc-C-------------------------------------------CCCCCCCCCC-
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTV-D-------------------------------------------QRGMNTGLAS- 320 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~-~-------------------------------------------~~g~~~g~~~- 320 (487)
+...+.+.+.++|+|.|++|.-.. . -.+++.|...
T Consensus 70 ~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi 149 (229)
T PRK09722 70 DPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFI 149 (229)
T ss_pred CHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhcc
Confidence 788888888889999998887521 0 0122333322
Q ss_pred ---HHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc-ccc
Q psy7343 321 ---WEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG-NLY 367 (487)
Q Consensus 321 ---~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa-~l~ 367 (487)
++.++++++.. ++.|-.-|||+ .+.+.++. +.|||.+.+|++ +..
T Consensus 150 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~-~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 150 PEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLM-EAGADVFIVGTSGLFN 203 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHH-HcCCCEEEEChHHHcC
Confidence 24455555432 46688999997 67788888 799999999975 443
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.046 Score=54.65 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=49.4
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH-HHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW-EHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~-~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+..+..++.+. .+.|+|+|++ +.... .+. +.++.+++. .++|+++.||| +.+.+.++. ++|+|+++
T Consensus 189 ev~t~eea~~A-~~~gaD~I~l-d~~~p--------~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~-~~Gvd~I~ 256 (272)
T cd01573 189 EVDSLEEALAA-AEAGADILQL-DKFSP--------EELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYA-AAGADILV 256 (272)
T ss_pred EcCCHHHHHHH-HHcCCCEEEE-CCCCH--------HHHHHHHHHHhccCCCceEEEECCC-CHHHHHHHH-HcCCcEEE
Confidence 45566665554 4799999999 43211 112 334434443 27999999999 789999998 79999997
Q ss_pred eccccc
Q psy7343 361 TAEGNL 366 (487)
Q Consensus 361 iGRa~l 366 (487)
+|.-..
T Consensus 257 vsai~~ 262 (272)
T cd01573 257 TSAPYY 262 (272)
T ss_pred EChhhc
Confidence 776433
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.076 Score=59.60 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=92.4
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.||-.|=+--|+.++.++... ..|+|=|-.+. | +.+.+.++++..+ .+++-+.+-+
T Consensus 110 v~~PvLrKDFIid~~QI~ea~~~---GADavLLI~~~-------------L--~~~~l~~l~~~a~-~lGme~LvEv--- 167 (695)
T PRK13802 110 VHIPVLRKDFIVTDYQIWEARAH---GADLVLLIVAA-------------L--DDAQLKHLLDLAH-ELGMTVLVET--- 167 (695)
T ss_pred CCCCEEeccccCCHHHHHHHHHc---CCCEeehhHhh-------------c--CHHHHHHHHHHHH-HcCCeEEEEe---
Confidence 36788877554465554443321 13333222111 1 3456777776544 4577777766
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
...+-++...++|++.|-|-.|.-. +-..+.+...++...+ ++.+|+-+||.+++|+.++. +.|+|+|
T Consensus 168 ----h~~~el~~a~~~ga~iiGINnRdL~-----tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~-~~G~dav 237 (695)
T PRK13802 168 ----HTREEIERAIAAGAKVIGINARNLK-----DLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYA-RAGADAV 237 (695)
T ss_pred ----CCHHHHHHHHhCCCCEEEEeCCCCc-----cceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHH-HCCCCEE
Confidence 2333445566689999989666432 2235677777777776 56788999999999999998 7999999
Q ss_pred EeccccccCccc
Q psy7343 360 MTAEGNLYNPAL 371 (487)
Q Consensus 360 miGRa~l~~P~l 371 (487)
.||.++|..|+.
T Consensus 238 LIGeslm~~~dp 249 (695)
T PRK13802 238 LVGEGVATADDH 249 (695)
T ss_pred EECHHhhCCCCH
Confidence 999999999874
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.11 Score=52.26 Aligned_cols=125 Identities=16% Similarity=0.178 Sum_probs=79.8
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|.+..-..+.-.++++.+.+.+ ++||++.+- .+..+..+.+
T Consensus 19 D~~~l~~l~~~l~~~--------Gv-~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~--~~t~~~i~~a 87 (289)
T cd00951 19 DEDAYRAHVEWLLSY--------GA-AALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG--YGTATAIAYA 87 (289)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC--CCHHHHHHHH
Confidence 666777777766555 44 4455556566654334555566666665554 589999873 2667889999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-Ec--CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-AN--GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-~n--GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..-. ... .+...-.++++.+.+.+++||+ +| |--.+++.+.++.+
T Consensus 88 ~~a~~~Gad~v~~~pP~-y~~--~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 88 QAAEKAGADGILLLPPY-LTE--APQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHhCCCEEEECCCC-CCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 99999999999993211 000 1111234778888888899976 43 43346777777663
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.085 Score=51.83 Aligned_cols=138 Identities=20% Similarity=0.199 Sum_probs=78.4
Q ss_pred HHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc-ccccHHHHHHHHHHcCC
Q psy7343 222 AKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DVNKTVEYARMLERAGC 299 (487)
Q Consensus 222 a~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~~~~~e~a~~le~~G~ 299 (487)
|+++++. +++|=+--.. ... .+|. -....-.++.+.+.++.|.+.+++||++.+..|. +..+..+.++.+.+.|+
T Consensus 22 A~~~e~~G~~ai~~s~~~-~~~-s~G~-pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 22 ARLAERAGFKAIYTSGAG-VAA-SLGL-PDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHHHHcCCCEEEeccHH-HHH-hcCC-CCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 4556555 6666543221 111 1121 2222345777888888888888999999987753 34467777888899999
Q ss_pred cEEEEEccccCCC-CCCCCCC--C----HHHHHHHHhhC----CCcEEEcCC---C--CCHHHHHHH---HHhcCCcEEE
Q psy7343 300 QLLAVHGRTVDQR-GMNTGLA--S----WEHITAVRKAL----TIPVIANGN---I--QCLADVEAC---LAQTGVAGVM 360 (487)
Q Consensus 300 d~I~VhgRt~~~~-g~~~g~~--~----~~~i~~i~~~~----~iPVi~nGg---I--~s~~da~~~---l~~~Gad~Vm 360 (487)
++|.|-+.+...+ +...+.. . .+.++.+++.. +++|++-=| + .+.+++.+. ..+.|||+++
T Consensus 99 ~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~ 178 (243)
T cd00377 99 AGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIF 178 (243)
T ss_pred EEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999954432221 1111111 1 13333344332 466666411 2 344554432 2258999999
Q ss_pred ec
Q psy7343 361 TA 362 (487)
Q Consensus 361 iG 362 (487)
+=
T Consensus 179 v~ 180 (243)
T cd00377 179 VE 180 (243)
T ss_pred eC
Confidence 85
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.011 Score=56.82 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=58.1
Q ss_pred cHHHHHHHHHH-cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLER-AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~-~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+....+...++ .|...+-+-. .+++..+..-+.++++++.. |+|+.|||+|++++.++. +.|||.+.+|..
T Consensus 151 ~iaa~y~la~~~~g~~~~YlEa-----gsga~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a-~agAD~IVtG~i 222 (240)
T COG1646 151 DIAAYYALAEKYLGMPVVYLEA-----GSGAGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMA-EAGADTIVTGTI 222 (240)
T ss_pred HHHHHHHHHHHHhCCeEEEEEe-----cCCCCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHH-HcCCCEEEECce
Confidence 44444444443 4666555521 12355666778888877765 999999999999999999 689999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
+..+|.-+.
T Consensus 223 iee~~~~~~ 231 (240)
T COG1646 223 IEEDPDKAL 231 (240)
T ss_pred eecCHHHHH
Confidence 999885443
|
|
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.024 Score=52.20 Aligned_cols=110 Identities=25% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHhhCCcCcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHH
Q psy7343 219 TEAAKLAEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 219 ~~aa~~~~~~~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e 289 (487)
.+-|++++++ |. |..+...| |-+.+.||..+.+ +.++++|||.+|.|+| ..-
T Consensus 24 ~eQAkIAE~A--------GA~AVMaLervPadiR~~G--GVaRMsDP~~I~e----I~~aVsIPVMAK~RIG-----Hfv 84 (208)
T PF01680_consen 24 AEQAKIAEEA--------GAVAVMALERVPADIRAAG--GVARMSDPKMIKE----IMDAVSIPVMAKVRIG-----HFV 84 (208)
T ss_dssp HHHHHHHHHH--------T-SEEEE-SS-HHHHHHTT--S---S--HHHHHH----HHHH-SSEEEEEEETT------HH
T ss_pred HHHHHHHHHh--------CCeEEEEeccCCHhHHhcC--CccccCCHHHHHH----HHHheEeceeeccccc-----eee
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
.++.|+..|+|+|.= .- ...++|.+. .--|..+++|.+. |-++.-.+.+-+ ..||..+
T Consensus 85 EAqiLealgVD~IDE-SE-------VLTpAD~~~-HI~K~~F~vPFVc--GarnLGEALRRI-~EGAaMI 142 (208)
T PF01680_consen 85 EAQILEALGVDYIDE-SE-------VLTPADEEN-HIDKHNFKVPFVC--GARNLGEALRRI-AEGAAMI 142 (208)
T ss_dssp HHHHHHHTT-SEEEE-ET-------TS--S-SS-----GGG-SS-EEE--EESSHHHHHHHH-HTT-SEE
T ss_pred hhhhHHHhCCceecc-cc-------ccccccccc-cccchhCCCCeEe--cCCCHHHHHhhH-Hhhhhhh
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.099 Score=52.73 Aligned_cols=126 Identities=9% Similarity=0.035 Sum_probs=81.5
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecC-CCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIG-CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~G-cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
|.+.+.+..+.+.+. | + ..+...|.+|....-..+.-.++++.+.+.+ ++||++.+-- .+..+..+.
T Consensus 19 D~~~~~~~i~~~i~~--------G~v-~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i~l 88 (290)
T TIGR00683 19 NEKGLRQIIRHNIDK--------MKV-DGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAVEL 88 (290)
T ss_pred CHHHHHHHHHHHHhC--------CCc-CEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHH
Confidence 666777777766555 5 4 4566677777755445666666777666655 4788887621 245578899
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEE-E-----cCCCCCHHHHHHHHH
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVI-A-----NGNIQCLADVEACLA 352 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi-~-----nGgI~s~~da~~~l~ 352 (487)
++..++.|+|+|++..-. ... .+...-.++++++.+.. ++||+ + .|--.+.+.+.++.+
T Consensus 89 a~~a~~~Gad~v~v~~P~-y~~--~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 89 GKYATELGYDCLSAVTPF-YYK--FSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred HHHHHHhCCCEEEEeCCc-CCC--CCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence 999999999999994321 110 11112346777787766 78886 3 366667777777763
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.049 Score=57.48 Aligned_cols=84 Identities=15% Similarity=0.200 Sum_probs=59.2
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccC--CCCCCCCCCCHHHHHHHHhhC---------CCcEEEcCCCCCHHHHHHHH
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVD--QRGMNTGLASWEHITAVRKAL---------TIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~--~~g~~~g~~~~~~i~~i~~~~---------~iPVi~nGgI~s~~da~~~l 351 (487)
+..+..++ ...++.|+|+|.+ |--.. .+.....+.-++.++++++.+ ++||++-||| +.+++.+++
T Consensus 306 StHs~eEl-~~A~~~gaDYI~l-GPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl 382 (437)
T PRK12290 306 STHGYYEL-LRIVQIQPSYIAL-GHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVW 382 (437)
T ss_pred ecCCHHHH-HHHhhcCCCEEEE-CCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHH
Confidence 45556664 4556789999999 53211 111122234577777766554 7999999999 789999999
Q ss_pred HhcCCcEEEeccccccCcc
Q psy7343 352 AQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 352 ~~~Gad~VmiGRa~l~~P~ 370 (487)
++|+++|.+-|+++..++
T Consensus 383 -~aGa~GVAVVSAI~~A~D 400 (437)
T PRK12290 383 -QCGVSSLAVVRAITLAED 400 (437)
T ss_pred -HcCCCEEEEehHhhcCCC
Confidence 799999999999986543
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.092 Score=52.87 Aligned_cols=125 Identities=19% Similarity=0.212 Sum_probs=77.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++-+-- .+..+..+.+
T Consensus 20 D~~~l~~~i~~l~~~--------Gv-~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a 89 (292)
T PRK03170 20 DFAALRKLVDYLIAN--------GT-DGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIELT 89 (292)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHHHH
Confidence 667777777766555 33 3344445556554334455555666555554 4788876521 2456889999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA------NGNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l 351 (487)
+.+++.|+|+|++..-.. .. .+...-.++++++.+.+++||+. .|---+.+.+.++.
T Consensus 90 ~~a~~~G~d~v~~~pP~~-~~--~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 90 KFAEKAGADGALVVTPYY-NK--PTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA 152 (292)
T ss_pred HHHHHcCCCEEEECCCcC-CC--CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH
Confidence 999999999999943210 00 11112347778888888899873 35566777777775
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.33 Score=47.21 Aligned_cols=158 Identities=21% Similarity=0.175 Sum_probs=90.5
Q ss_pred HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee-cccccccHHHHHHHHHH
Q psy7343 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-IYQDVNKTVEYARMLER 296 (487)
Q Consensus 218 ~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-~~~d~~~~~e~a~~le~ 296 (487)
..|+...++...|.||+- -| .. |+-.-..+..+.+|++.+... .||+..+- +..+..+....+..+..
T Consensus 10 ~eEA~~Al~~GaDiIDvK--~P----~~---GaLGA~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~~~aa~~~a~ 78 (238)
T PRK02227 10 LEEALEALAGGADIIDVK--NP----KE---GSLGANFPWVIREIVAAVPGR--KPVSATIGDVPYKPGTISLAALGAAA 78 (238)
T ss_pred HHHHHHHHhcCCCEEEcc--CC----CC---CCCCCCCHHHHHHHHHHhCCC--CCceeeccCCCCCchHHHHHHHHHHh
Confidence 445555555557888772 12 22 333345677888887776543 69999861 01122344455555667
Q ss_pred cCCcEEEEEccccCCCCCCCCCCCHHHHHHH----HhhC-CCcEEEcC--CCC-----CHHHHHHHHHhcCCcEEEeccc
Q psy7343 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAV----RKAL-TIPVIANG--NIQ-----CLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i----~~~~-~iPVi~nG--gI~-----s~~da~~~l~~~Gad~VmiGRa 364 (487)
+|+|+|-| |...... .....+.++.+ +... +..|++++ |-. ++.++.++..+.|++++|+=++
T Consensus 79 ~GvDyVKv-Gl~~~~~----~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa 153 (238)
T PRK02227 79 TGADYVKV-GLYGGKT----AEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTA 153 (238)
T ss_pred hCCCEEEE-cCCCCCc----HHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecc
Confidence 99999999 6531111 00112333333 2222 45566543 211 5567777777899999999776
Q ss_pred cccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 365 NLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 365 ~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
.=..-.+|.-. .++...+|.+..+.++
T Consensus 154 ~Kdg~~Lfd~l---~~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 154 IKDGKSLFDHM---DEEELAEFVAEARSHG 180 (238)
T ss_pred cCCCcchHhhC---CHHHHHHHHHHHHHcc
Confidence 55556666532 3455667777777765
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.1 Score=52.80 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=80.2
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|.+..-..+.-.++++.+.+.+ ++||++.+-. .+..+..+.+
T Consensus 19 D~~~l~~lv~~~~~~--------Gv-~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ai~~a 88 (294)
T TIGR02313 19 DEEALRELIEFQIEG--------GS-HAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDETLELT 88 (294)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHHHHHHH
Confidence 666777777766555 54 4555666667655334555556666555544 5888876521 2445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCC---CCHHHHHHHHhhC-CCcEEE------cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGL---ASWEHITAVRKAL-TIPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~---~~~~~i~~i~~~~-~iPVi~------nGgI~s~~da~~~l~ 352 (487)
+..++.|+|++++..-. |..+ ...++++.+.+.+ ++||+. .|--.+++.+.++.+
T Consensus 89 ~~A~~~Gad~v~v~pP~------y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~ 153 (294)
T TIGR02313 89 KFAEEAGADAAMVIVPY------YNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRK 153 (294)
T ss_pred HHHHHcCCCEEEEcCcc------CCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHh
Confidence 99999999999994321 2221 2347788888888 899873 355567777777763
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.27 Score=48.19 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCCeeeeec---cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe
Q psy7343 203 DRPLIIQFC---GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~---g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi 278 (487)
..||++-+- +.++++..+.++.+.++ +++|.|- +. ....+.+++++++ .++|++.+
T Consensus 73 ~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iE----------D~---------~~~~~~i~ai~~a-~i~ViaRt 132 (240)
T cd06556 73 LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIE----------GG---------EWHIETLQMLTAA-AVPVIAHT 132 (240)
T ss_pred CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEc----------Cc---------HHHHHHHHHHHHc-CCeEEEEe
Confidence 469999875 44667777777766666 4444433 21 1233445556554 47777655
Q ss_pred eccc-----------------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 279 RIYQ-----------------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 279 R~~~-----------------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
...+ +.++..+-++.++++|+|.|.+.+. +.+.++++.+.+++|++++|
T Consensus 133 d~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~------------~~e~~~~i~~~~~~P~~~~g 198 (240)
T cd06556 133 GLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV------------PVELAKQITEALAIPLAGIG 198 (240)
T ss_pred CCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC------------CHHHHHHHHHhCCCCEEEEe
Confidence 3311 1235566678889999999999322 57889999999999999876
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.38 Score=48.74 Aligned_cols=100 Identities=18% Similarity=0.300 Sum_probs=64.9
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEe-eccc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCC--C
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKI-RIYQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT--G 317 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKi-R~~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~--g 317 (487)
..|-+...++++..+ ..++.|-+-+ +++. + ..+..+..+..+++|+|.+.|.=.|.-+. |. +
T Consensus 111 eeNi~~T~~vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~--Yk~~~ 187 (307)
T PRK05835 111 EENLELTSKVVKMAH-NAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGA--FKFKG 187 (307)
T ss_pred HHHHHHHHHHHHHHH-HcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccc--cCCCC
Confidence 345566666666544 3466665532 2221 1 12468888888999999998733333222 43 3
Q ss_pred --CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 318 --LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 318 --~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
.-+|+.+++|++.+++|++.-|+=..+++..+.+..+|
T Consensus 188 ~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g 227 (307)
T PRK05835 188 EPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAG 227 (307)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhc
Confidence 35889999999999999999888888886554443444
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.21 Score=50.11 Aligned_cols=142 Identities=19% Similarity=0.284 Sum_probs=92.1
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccc--cCChHHHHHHHHHHhhhccCcEEEEe-
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKI- 278 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKi- 278 (487)
..||.+.+. +.+.+...++. +..|+- +-.. ||.+ ..+.+...++++... ..+++|-+-+
T Consensus 74 ~vPV~lHLDH~~~~e~i~~Ai---~~GftS----------VM~D---gS~l~~eeNi~~T~~vve~Ah-~~gv~VEaElG 136 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQAV---RAGFTS----------VMID---GAALPFEENIAFTKEAVDFAK-SYGVPVEAELG 136 (283)
T ss_pred CCCEEEECcCCCCHHHHHHHH---HcCCCE----------EEEe---CCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEec
Confidence 569999987 55555444443 222322 2222 2333 345666777776554 3588775532
Q ss_pred ecccc----------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCH-HH
Q psy7343 279 RIYQD----------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCL-AD 346 (487)
Q Consensus 279 R~~~d----------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~-~d 346 (487)
++++. ..+..+..+.++++|+|.+.|.-.|..+. |.+ .-+++.+++|++.+++|++.-||=..+ ++
T Consensus 137 ~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~--Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~ 214 (283)
T PRK07998 137 AILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGL--EDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEI 214 (283)
T ss_pred cCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccC--CCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHH
Confidence 22211 24678888889999999998733333322 544 236899999999999999987776666 56
Q ss_pred HHHHHHhcCCcEEEeccc
Q psy7343 347 VEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa 364 (487)
+.+++ ..|+..|=++|.
T Consensus 215 ~~~ai-~~Gi~KiNi~Te 231 (283)
T PRK07998 215 LRSFV-NYKVAKVNIASD 231 (283)
T ss_pred HHHHH-HcCCcEEEECHH
Confidence 77787 789999999874
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.083 Score=54.88 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
...+|+.++.+++..++|||. .||.+.+|++++. +.|+|+|.++-
T Consensus 209 ~~~tW~di~wlr~~~~~Piiv-KgV~~~~dA~~a~-~~Gvd~I~Vsn 253 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAI-QAGAAGIIVSN 253 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHH-HcCCCEEEECC
Confidence 345899999999999999998 6788999999999 79999998864
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.11 Score=50.33 Aligned_cols=151 Identities=14% Similarity=0.135 Sum_probs=93.0
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcc---ee--e---ccC-----ccccccCChHHHHHHHH----
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM---VA--K---RGH-----YGAYLQDDWPLLTNLVS---- 264 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~---i~--~---~gr-----~G~~l~~d~~~i~eiv~---- 264 (487)
..+++.=+++.++++..+.++.+.+. ...|||-+-.|.. +. + +.. .|+.-.-+.+.+.+.++
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~ 93 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGAN 93 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCC
Confidence 35677778888888888888877665 7888887765542 10 0 011 11111223444433222
Q ss_pred -------------HHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC
Q psy7343 265 -------------SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331 (487)
Q Consensus 265 -------------~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~ 331 (487)
..++ .++|++= ...+..|+... .++|++.|-+..-. ..| ..+++.++.-+
T Consensus 94 FiVsP~~~~~v~~~~~~-~~i~~iP------G~~TpsEi~~A-~~~Ga~~vKlFPA~------~~G---~~~ikal~~p~ 156 (222)
T PRK07114 94 FIVTPLFNPDIAKVCNR-RKVPYSP------GCGSLSEIGYA-EELGCEIVKLFPGS------VYG---PGFVKAIKGPM 156 (222)
T ss_pred EEECCCCCHHHHHHHHH-cCCCEeC------CCCCHHHHHHH-HHCCCCEEEECccc------ccC---HHHHHHHhccC
Confidence 2221 1333322 33455565544 46899999883310 112 46777877766
Q ss_pred -CCcEEEcCCCCC-HHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 332 -TIPVIANGNIQC-LADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 332 -~iPVi~nGgI~s-~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+++++..|||.. .+++.+.+ ..|+.+|.+|+.+..+..+
T Consensus 157 p~i~~~ptGGV~~~~~n~~~yl-~aGa~avg~Gs~L~~~~~~ 197 (222)
T PRK07114 157 PWTKIMPTGGVEPTEENLKKWF-GAGVTCVGMGSKLIPKEAL 197 (222)
T ss_pred CCCeEEeCCCCCcchhcHHHHH-hCCCEEEEEChhhcCcccc
Confidence 799999999985 58999999 5999999999987755443
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.13 Score=49.26 Aligned_cols=146 Identities=17% Similarity=0.191 Sum_probs=80.9
Q ss_pred CeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccc
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV 284 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~ 284 (487)
++.+-+.-.+.++..+.++.+....++|+++..+ . . .+| + ++++.+++...+++.+|+ .|.
T Consensus 5 ~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l-~--~---~~G------~----~~v~~ir~~~~i~~D~k~---~di 65 (215)
T PRK13813 5 RIILALDVTDRERALKIAEELDDYVDAIKVGWPL-V--L---ASG------L----GIIEELKRYAPVIADLKV---ADI 65 (215)
T ss_pred CEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHH-H--H---hhC------H----HHHHHHHhcCCEEEEeec---ccc
Confidence 3445554455666666666555555566665332 1 0 012 2 445556665556666665 233
Q ss_pred c-cHHHHHHHHHHcCCcEEEEEccccC-----------CCC--------------------------------CCCCC--
Q psy7343 285 N-KTVEYARMLERAGCQLLAVHGRTVD-----------QRG--------------------------------MNTGL-- 318 (487)
Q Consensus 285 ~-~~~e~a~~le~~G~d~I~VhgRt~~-----------~~g--------------------------------~~~g~-- 318 (487)
. +...+++.+.+.|+|.|++|..... +.| +..|.
T Consensus 66 ~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~ 145 (215)
T PRK13813 66 PNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVA 145 (215)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 3 2333447777889999999875310 000 00000
Q ss_pred --CCHHHHHHHHhhCCCc-EEEcCCCCCH-HHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 319 --ASWEHITAVRKALTIP-VIANGNIQCL-ADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 319 --~~~~~i~~i~~~~~iP-Vi~nGgI~s~-~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
...+.++++++..+-+ .+..|||+.. .++.+++ +.|+|.+.+||+++..++
T Consensus 146 ~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~-~aGad~iV~Gr~I~~~~d 200 (215)
T PRK13813 146 PATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAI-KAGADYVIVGRSIYNAAD 200 (215)
T ss_pred CCCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHH-HcCCCEEEECcccCCCCC
Confidence 0123444555555332 3377899864 2477777 689999999999776654
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.13 Score=58.72 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=54.2
Q ss_pred CCcEEEEEccccC--CCCCCCCCCCHHHHHHHHhhCC---CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 298 GCQLLAVHGRTVD--QRGMNTGLASWEHITAVRKALT---IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 298 G~d~I~VhgRt~~--~~g~~~g~~~~~~i~~i~~~~~---iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
|+|+|.+ |--.. .++.......|+.++++++.++ +||++-||| +.+++.+++ ++|++||.+.++++..++
T Consensus 128 gaDYi~~-Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~-~~Ga~giAvisai~~a~d 202 (755)
T PRK09517 128 LPDVIGI-GPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELA-ATGIDGLCVVSAIMAAAN 202 (755)
T ss_pred CCCEEEE-CCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHH-HcCCCEEEEehHhhCCCC
Confidence 5999999 53211 1111223346899999998887 999999999 789999999 799999999999987655
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.56 Score=45.46 Aligned_cols=154 Identities=22% Similarity=0.233 Sum_probs=88.1
Q ss_pred HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee-cccccccHHHHHHHHHH
Q psy7343 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-IYQDVNKTVEYARMLER 296 (487)
Q Consensus 218 ~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-~~~d~~~~~e~a~~le~ 296 (487)
..|+...++...|.||+- -| ..|..| -..+..+.+|++.+.. ..||++.+- +..+.......+.....
T Consensus 10 ~~EA~~a~~~gaDiID~K--~P----~~GaLG---A~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~~aa~~~a~ 78 (235)
T PF04476_consen 10 VEEAEEALAGGADIIDLK--NP----AEGALG---ALFPWVIREIVAAVPG--RKPVSATIGDLPMKPGTASLAALGAAA 78 (235)
T ss_pred HHHHHHHHhCCCCEEEcc--CC----CCCCCC---CCCHHHHHHHHHHcCC--CCceEEEecCCCCCchHHHHHHHHHHh
Confidence 445555555568888772 12 233333 3457777777665432 379999871 11122233334444556
Q ss_pred cCCcEEEEEccccCCCCCCCCCCCH----HHHHHH----HhhC-CCcEEEcC--CC-----CCHHHHHHHHHhcCCcEEE
Q psy7343 297 AGCQLLAVHGRTVDQRGMNTGLASW----EHITAV----RKAL-TIPVIANG--NI-----QCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~i----~~~~-~iPVi~nG--gI-----~s~~da~~~l~~~Gad~Vm 360 (487)
+|+|+|-| |= + |..++ +.++.+ ++.- +..+++.+ |- .++.++.+...+.|++++|
T Consensus 79 ~GvdyvKv-Gl-------~-g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvM 149 (235)
T PF04476_consen 79 TGVDYVKV-GL-------F-GCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVM 149 (235)
T ss_pred cCCCEEEE-ec-------C-CCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEE
Confidence 89999999 43 2 21222 333333 2221 34455543 22 1455667777789999999
Q ss_pred eccccccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 361 TAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 361 iGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
+=++.=....+|.-. ..+.+.+|.+..+.++
T Consensus 150 lDTa~Kdg~~L~d~~---~~~~L~~Fv~~ar~~g 180 (235)
T PF04476_consen 150 LDTADKDGGSLFDHL---SEEELAEFVAQARAHG 180 (235)
T ss_pred EecccCCCCchhhcC---CHHHHHHHHHHHHHcc
Confidence 999877777887643 3455667777777665
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.13 Score=51.88 Aligned_cols=123 Identities=11% Similarity=0.133 Sum_probs=80.7
Q ss_pred CHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
|.+.+.+.++.+.+ . |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++.+-- .+..+..+.
T Consensus 22 D~~~~~~li~~l~~~~--------Gv-~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~~ai~~ 91 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQ--------GI-DGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQEL 91 (293)
T ss_pred CHHHHHHHHHHHHhcC--------CC-CEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHHHHHHH
Confidence 66777777776665 5 44 4455556667654334555566666666555 4788887611 245678888
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCC---CCHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGL---ASWEHITAVRKALTIPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~---~~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
++.+++.|+|++++..-. |..+ .-.++++++.+.+++||+. | |--.+++.+.++.+
T Consensus 92 a~~a~~~Gad~v~v~~P~------y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 92 AKYATELGYDAISAVTPF------YYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HHHHHHcCCCEEEEeCCc------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 999999999999995421 2221 2347788888888999874 2 55557777777763
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.072 Score=54.30 Aligned_cols=129 Identities=15% Similarity=0.099 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHH-cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-C
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER-AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-T 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~-~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~ 332 (487)
+.+...++++.++.....-+.+-+ |...++.+.+.+.++. .|+|.|.|.-- + +++ ..-.+.++++|+.. +
T Consensus 80 ~~e~~~~fv~~~~~~~~~~~~vav--G~~~~d~er~~~L~~~~~g~D~iviD~A---h--Ghs-~~~i~~ik~ik~~~P~ 151 (346)
T PRK05096 80 SVEEWAAFVNNSSADVLKHVMVST--GTSDADFEKTKQILALSPALNFICIDVA---N--GYS-EHFVQFVAKAREAWPD 151 (346)
T ss_pred CHHHHHHHHHhccccccceEEEEe--cCCHHHHHHHHHHHhcCCCCCEEEEECC---C--CcH-HHHHHHHHHHHHhCCC
Confidence 455555666656543322233322 2233344444444442 69999999211 0 011 11248899999887 6
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEec--cccccCcccccCCCCCcHHHHHHHHHHHHHc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTA--EGNLYNPALFTGQTRPAWELASEYLDLVAQY 393 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiG--Ra~l~~P~lf~~~~~~~~~~~~~~l~~~~~~ 393 (487)
++||+ |+|-|++.++.++ ..|||+|=+| -|-+-.--+..+...+....+.+--+.+.++
T Consensus 152 ~~vIa-GNV~T~e~a~~Li-~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~ 212 (346)
T PRK05096 152 KTICA-GNVVTGEMVEELI-LSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGL 212 (346)
T ss_pred CcEEE-ecccCHHHHHHHH-HcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHc
Confidence 77777 9999999999998 7999997655 3433333343333333333333333444444
|
|
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.3 Score=42.45 Aligned_cols=176 Identities=8% Similarity=0.118 Sum_probs=92.4
Q ss_pred cCCCchHHHHHHHHhCCccceeccc--cchhhhcChhHHHHHHhcCCCCC-CeeeeeccCCHHHHHHHHHhhCCc-CcEE
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMV--SAHQFIADKKLRQEILMSTPEDR-PLIIQFCGNDSKNLTEAAKLAEPH-CDGI 232 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v--~~~~Ll~~~~~~~~~l~~~~~~~-Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~I 232 (487)
.|+++..=...+.++|++.+. +| ..+.=.-+++...++.+..+... +|.|- ...++++..++++ .. .|.|
T Consensus 6 CGit~~eda~~~~~~GaD~iG--fIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf-~~~~~~~i~~~~~---~~~~d~v 79 (207)
T PRK13958 6 CGFTTIKDVTAASQLPIDAIG--FIHYEKSKRHQTITQIKKLASAVPNHIDKVCVV-VNPDLTTIEHILS---NTSINTI 79 (207)
T ss_pred cCCCcHHHHHHHHHcCCCEEE--EecCCCCcccCCHHHHHHHHHhCCCCCCEEEEE-eCCCHHHHHHHHH---hCCCCEE
Confidence 455555444567778886532 22 11111123445555655333222 23322 2345666555544 33 4555
Q ss_pred EeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC
Q psy7343 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311 (487)
Q Consensus 233 diN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~ 311 (487)
+|| |. .+++.+.+ +++.. .++++--++.. . ...+.+..... .+|++.+.... .+
T Consensus 80 QLH----------G~------e~~~~~~~----l~~~~~~~~iika~~~~--~-~~~~~~~~~~~-~~d~~LlDs~~-~~ 134 (207)
T PRK13958 80 QLH----------GT------ESIDFIQE----IKKKYSSIKIIKALPAD--E-NIIQNINKYKG-FVDLFIIDTPS-VS 134 (207)
T ss_pred EEC----------CC------CCHHHHHH----HhhcCCCceEEEEeccc--H-HHHHHHHHHHh-hCCEEEEcCCC-CC
Confidence 555 32 23444333 44332 35665555432 1 11222222222 48999996532 22
Q ss_pred CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH-hcCCcEEEecccccc
Q psy7343 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA-QTGVAGVMTAEGNLY 367 (487)
Q Consensus 312 ~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~-~~Gad~VmiGRa~l~ 367 (487)
.|+..-..+|+.++++ ...|++.+|||+ ++.+.++++ ..+..+|-+.+|.=.
T Consensus 135 ~GGtG~~~dw~~~~~~---~~~p~iLAGGL~-peNV~~a~~~~~~p~gVDvsSGVE~ 187 (207)
T PRK13958 135 YGGTGQTYDWTILKHI---KDIPYLIAGGIN-SENIQTVEQLKLSHQGYDIASGIET 187 (207)
T ss_pred CCcCCcEeChHHhhhc---cCCCEEEECCCC-HHHHHHHHhcCCCCCEEEcccccCC
Confidence 2322234689988765 346999999995 777777764 457789999888753
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.098 Score=53.32 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHc--CCcEEEEEccccCCCCCCCCCC--CHHHHHHHHhh
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERA--GCQLLAVHGRTVDQRGMNTGLA--SWEHITAVRKA 330 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~--G~d~I~VhgRt~~~~g~~~g~~--~~~~i~~i~~~ 330 (487)
+.+...++++.++.....-+.+-+ |... +..+.++.|.++ |+|.|.|.-- .|.. -.+.++++++.
T Consensus 79 ~~e~~~~~v~~~~~~~~~~~~vsv--G~~~-~d~er~~~L~~a~~~~d~iviD~A--------hGhs~~~i~~ik~ir~~ 147 (343)
T TIGR01305 79 SVDEWKAFATNSSPDCLQNVAVSS--GSSD-NDLEKMTSILEAVPQLKFICLDVA--------NGYSEHFVEFVKLVREA 147 (343)
T ss_pred CHHHHHHHHHhhcccccceEEEEe--ccCH-HHHHHHHHHHhcCCCCCEEEEECC--------CCcHHHHHHHHHHHHhh
Confidence 355555555544433322333332 2222 334555556665 5999999211 1212 24789999998
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 331 ~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
..-+.+..|+|.|++++++++ +.|||+|-+|
T Consensus 148 ~p~~~viaGNV~T~e~a~~Li-~aGAD~ikVg 178 (343)
T TIGR01305 148 FPEHTIMAGNVVTGEMVEELI-LSGADIVKVG 178 (343)
T ss_pred CCCCeEEEecccCHHHHHHHH-HcCCCEEEEc
Confidence 865566669999999999999 7999999877
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.0087 Score=55.61 Aligned_cols=72 Identities=26% Similarity=0.368 Sum_probs=54.7
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
|........+.+++...|+|-| +.| .-...++++++.+++|||+.|=|.+.+|+.+++ +.||++|..+
T Consensus 102 DS~al~~~~~~i~~~~PD~vEi----------lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al-~aGa~aVSTS 169 (175)
T PF04309_consen 102 DSSALETGIKQIEQSKPDAVEI----------LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEAL-KAGADAVSTS 169 (175)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEE----------ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHC-CTTCEEEEE-
T ss_pred cHHHHHHHHHHHhhcCCCEEEE----------chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHH-HcCCEEEEcC
Confidence 6667778888999999999999 444 334677888888999999999999999999999 8999999887
Q ss_pred cccc
Q psy7343 363 EGNL 366 (487)
Q Consensus 363 Ra~l 366 (487)
..-|
T Consensus 170 ~~~L 173 (175)
T PF04309_consen 170 NKEL 173 (175)
T ss_dssp -HHH
T ss_pred ChHh
Confidence 5433
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.15 Score=52.36 Aligned_cols=110 Identities=7% Similarity=0.065 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhccCcEEEEe-eccc---c-------cccHHHHHHHHHHcCCcEEEEEccccC--C----------CCC
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKI-RIYQ---D-------VNKTVEYARMLERAGCQLLAVHGRTVD--Q----------RGM 314 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKi-R~~~---d-------~~~~~e~a~~le~~G~d~I~VhgRt~~--~----------~g~ 314 (487)
.+.+++++.. ..++|+.+=. ..|. + .+.....++...+.|+|.|-+ .-+.. . ...
T Consensus 180 ~l~~i~~ea~-~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv-~yp~~~~~f~~v~~~~~~~~~ 257 (348)
T PRK09250 180 EISEAFEEAH-ELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQ-KLPTNNGGYKAINFGKTDDRV 257 (348)
T ss_pred HHHHHHHHHH-HhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEe-cCCCChhhHHHhhcccccccc
Confidence 3444444433 3589988711 1121 1 123455677888999999988 21110 0 000
Q ss_pred CCC---CCCHHHHHHHHhhC---CCcEEEcCCCC-CHHHHHHHHH------hcCCcEEEeccccccCc
Q psy7343 315 NTG---LASWEHITAVRKAL---TIPVIANGNIQ-CLADVEACLA------QTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 315 ~~g---~~~~~~i~~i~~~~---~iPVi~nGgI~-s~~da~~~l~------~~Gad~VmiGRa~l~~P 369 (487)
|.+ ...-+.++.+.+.+ .+||+..||=. +.+++.++.+ +.|+.|+.+||=....|
T Consensus 258 ~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~ 325 (348)
T PRK09250 258 YSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRP 325 (348)
T ss_pred cccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCC
Confidence 111 11236667777776 79999888877 4444444322 46999999999766655
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.13 Score=50.61 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|+++|.|..- . .++.| +++.++++++.+++||+..+.|.++.++.+.. ..|||+|.+=-+
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe---~-~~F~G--s~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~-~~GADavLLI~~ 133 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTD---Q-SYFGG--SLEDLKSVSSELKIPVLRKDFILDEIQIREAR-AFGASAILLIVR 133 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcC---C-CcCCC--CHHHHHHHHHhcCCCEEeccccCCHHHHHHHH-HcCCCEEEeEHh
Confidence 37889999999999999988321 1 12333 68999999999999999999999999999998 699999976544
Q ss_pred ccc
Q psy7343 365 NLY 367 (487)
Q Consensus 365 ~l~ 367 (487)
++.
T Consensus 134 ~L~ 136 (247)
T PRK13957 134 ILT 136 (247)
T ss_pred hCC
Confidence 443
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.18 Score=54.84 Aligned_cols=81 Identities=17% Similarity=0.323 Sum_probs=58.7
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccC--CCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCc---
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVD--QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA--- 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~--~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad--- 357 (487)
+..+..+ +....+.|+|+|.+ |--.. .++ ...+..++.++++.+..++||++-|||. .+++.+++ .+|++
T Consensus 396 S~h~~~e-~~~a~~~gadyi~~-gpif~t~tk~-~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~-~~G~~~~~ 470 (502)
T PLN02898 396 SCKTPEQ-AEQAWKDGADYIGC-GGVFPTNTKA-NNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVM-ESGAPNLK 470 (502)
T ss_pred eCCCHHH-HHHHhhcCCCEEEE-CCeecCCCCC-CCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHH-HcCCCcCc
Confidence 3345544 45556789999987 32111 111 1223468999999888899999999995 89999988 78888
Q ss_pred EEEeccccccC
Q psy7343 358 GVMTAEGNLYN 368 (487)
Q Consensus 358 ~VmiGRa~l~~ 368 (487)
+|.++++++..
T Consensus 471 gvav~~~i~~~ 481 (502)
T PLN02898 471 GVAVVSALFDQ 481 (502)
T ss_pred eEEEEeHHhcC
Confidence 99999998854
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.36 Score=48.52 Aligned_cols=145 Identities=18% Similarity=0.299 Sum_probs=89.5
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...++. +. |. ..+-..+. .-.+..|-+...++++..+ ..++.|-+-+ ++
T Consensus 74 ~VPV~lHLDHg~~~e~i~~Ai----~~--------Gf-tSVM~DgS-~l~~eeNi~~T~~vv~~Ah-~~gv~VEaElG~v 138 (284)
T PRK09195 74 HHPLALHLDHHEKFDDIAQKV----RS--------GV-RSVMIDGS-HLPFAQNISLVKEVVDFCH-RFDVSVEAELGRL 138 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHH----Hc--------CC-CEEEeCCC-CCCHHHHHHHHHHHHHHHH-HcCCEEEEEEecc
Confidence 579999997 55554433333 22 33 22223221 1122456667777776554 3466665532 22
Q ss_pred cc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--CCCHHHHHHHHhhCCCcEEEcCCCCC-HH
Q psy7343 281 YQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--LASWEHITAVRKALTIPVIANGNIQC-LA 345 (487)
Q Consensus 281 ~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~~~~~~i~~i~~~~~iPVi~nGgI~s-~~ 345 (487)
++ + ..+.++..+.++++|+|.+.|.-.|.-.. |.+ .-+++.+++|++.+++|++.-|+=.. .+
T Consensus 139 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~--y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e 216 (284)
T PRK09195 139 GGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGM--YKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTK 216 (284)
T ss_pred cCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccc--cCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHH
Confidence 21 1 13667888888899999998833332222 444 34789999999999999987665444 45
Q ss_pred HHHHHHHhcCCcEEEecccc
Q psy7343 346 DVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa~ 365 (487)
++.+++ ..|+.-|=+++.+
T Consensus 217 ~~~~ai-~~Gi~KiNi~T~l 235 (284)
T PRK09195 217 DIQQTI-KLGICKVNVATEL 235 (284)
T ss_pred HHHHHH-HcCCeEEEeCcHH
Confidence 677787 7899888888754
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.18 Score=50.04 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=71.1
Q ss_pred HHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHH
Q psy7343 217 NLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLE 295 (487)
Q Consensus 217 ~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le 295 (487)
+..+.|+..+++ +++|-++ +-...+++ +.+ .++++++.+++||..| |.-....-+..+.
T Consensus 71 ~~~~~A~~~~~~GA~aisvl-------te~~~f~g----~~~----~l~~v~~~v~iPvl~k-----dfi~~~~qi~~a~ 130 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVL-------TDERFFQG----SLE----YLRAARAAVSLPVLRK-----DFIIDPYQIYEAR 130 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEe-------cccccCCC----CHH----HHHHHHHhcCCCEEee-----eecCCHHHHHHHH
Confidence 456777777766 4555222 11222232 333 4445777789999987 4332222466778
Q ss_pred HcCCcEEEEEccccCCCCCCCCCCCH-HHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 296 RAGCQLLAVHGRTVDQRGMNTGLASW-EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 296 ~~G~d~I~VhgRt~~~~g~~~g~~~~-~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++|+|+|.+.++.. ..... +.+... +.+++.+++ ++.|.+++++.. +.|+|.+.+.
T Consensus 131 ~~GAD~VlLi~~~l-------~~~~l~~li~~a-~~lGl~~lv--evh~~~E~~~A~-~~gadiIgin 187 (260)
T PRK00278 131 AAGADAILLIVAAL-------DDEQLKELLDYA-HSLGLDVLV--EVHDEEELERAL-KLGAPLIGIN 187 (260)
T ss_pred HcCCCEEEEEeccC-------CHHHHHHHHHHH-HHcCCeEEE--EeCCHHHHHHHH-HcCCCEEEEC
Confidence 89999999965531 11123 333333 345777776 899999999888 6899988874
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.14 Score=50.28 Aligned_cols=110 Identities=15% Similarity=0.263 Sum_probs=72.7
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-CCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~~~~~~i~~i 327 (487)
|+....+.+++..+- ..+.||.+|--...+.+++..+++.+.+.|..-|++-=|.....+.... ..|...+..+
T Consensus 105 gs~~~~n~~LL~~va-----~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~l 179 (250)
T PRK13397 105 GARNMQNFEFLKTLS-----HIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPII 179 (250)
T ss_pred CcccccCHHHHHHHH-----ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHH
Confidence 344455666665533 3489999997544567788999999999999777664443332221212 4577888889
Q ss_pred HhhCCCcEEEc----CCCCCH--HHHHHHHHhcCCcEEEeccc
Q psy7343 328 RKALTIPVIAN----GNIQCL--ADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 328 ~~~~~iPVi~n----GgI~s~--~da~~~l~~~Gad~VmiGRa 364 (487)
++..++||++. +|.+.. .-+...+ ..||||++|-+-
T Consensus 180 k~~~~lPVivd~SHs~G~r~~v~~~a~AAv-A~GAdGl~IE~H 221 (250)
T PRK13397 180 QQKTDLPIIVDVSHSTGRRDLLLPAAKIAK-AVGANGIMMEVH 221 (250)
T ss_pred HHHhCCCeEECCCCCCcccchHHHHHHHHH-HhCCCEEEEEec
Confidence 98889999884 444332 2234444 689999998753
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.16 Score=48.45 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=86.1
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCccee----eccCcc-----ccccCChHHHHHHH---------
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVA----KRGHYG-----AYLQDDWPLLTNLV--------- 263 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~----~~gr~G-----~~l~~d~~~i~eiv--------- 263 (487)
..+++.=+|+.++++..+.++.+.+. +..|||.+..|.... .+.++. +.-.-+.+.+.+.+
T Consensus 3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 35677778888888888888877665 888888887764210 000111 11022344443332
Q ss_pred --------HHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCc
Q psy7343 264 --------SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIP 334 (487)
Q Consensus 264 --------~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iP 334 (487)
+..++ .++|++- ...+..|+.. ..++|++.|-+..-.. +.| ..+++.++.-+ ++|
T Consensus 83 P~~~~~vi~~a~~-~~i~~iP------G~~TptEi~~-A~~~Ga~~vK~FPa~~-----~GG---~~yikal~~plp~~~ 146 (201)
T PRK06015 83 PGTTQELLAAAND-SDVPLLP------GAATPSEVMA-LREEGYTVLKFFPAEQ-----AGG---AAFLKALSSPLAGTF 146 (201)
T ss_pred CCCCHHHHHHHHH-cCCCEeC------CCCCHHHHHH-HHHCCCCEEEECCchh-----hCC---HHHHHHHHhhCCCCc
Confidence 22221 1333332 3345555554 4468999998832100 111 46688887766 799
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
++..|||. .+++.+.+ +.|+..+..|..+.
T Consensus 147 l~ptGGV~-~~n~~~~l-~ag~~~~~ggs~l~ 176 (201)
T PRK06015 147 FCPTGGIS-LKNARDYL-SLPNVVCVGGSWVA 176 (201)
T ss_pred EEecCCCC-HHHHHHHH-hCCCeEEEEchhhC
Confidence 99999996 47899999 56665555565444
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.35 Score=48.43 Aligned_cols=145 Identities=16% Similarity=0.270 Sum_probs=91.8
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.|.+...++.+ . |+ ..+-..+. .-.+..+.+...++++..+. .++.|-+-+ .+
T Consensus 69 ~VPV~lHLDH~~~~~~i~~ai~----~--------Gf-tSVMiD~S-~l~~eeNi~~t~~vv~~ah~-~gv~VEaElG~i 133 (276)
T cd00947 69 SVPVALHLDHGSSFELIKRAIR----A--------GF-SSVMIDGS-HLPFEENVAKTKEVVELAHA-YGVSVEAELGRI 133 (276)
T ss_pred CCCEEEECCCCCCHHHHHHHHH----h--------CC-CEEEeCCC-CCCHHHHHHHHHHHHHHHHH-cCCeEEEEEeee
Confidence 579999998 666665554432 2 33 22222221 11234566777777775554 466665532 22
Q ss_pred ccc----------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC---CCCHHHHHHHHhhCCCcEEEcCCCCCHH-H
Q psy7343 281 YQD----------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG---LASWEHITAVRKALTIPVIANGNIQCLA-D 346 (487)
Q Consensus 281 ~~d----------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g---~~~~~~i~~i~~~~~iPVi~nGgI~s~~-d 346 (487)
+.. ..+..+..+.++++|+|.+.|.-.|.-.. |.+ .-+++.++++.+.+++|++.-||=..++ +
T Consensus 134 ~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~--Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~ 211 (276)
T cd00947 134 GGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGA--YKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQ 211 (276)
T ss_pred cCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccc--cCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHH
Confidence 211 13578888888899999998732222221 433 3578999999999999999877766664 5
Q ss_pred HHHHHHhcCCcEEEecccc
Q psy7343 347 VEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~ 365 (487)
+.+++ ..|+.-|=+++.+
T Consensus 212 ~~~ai-~~Gi~KiNi~T~l 229 (276)
T cd00947 212 IRKAI-KLGVCKININTDL 229 (276)
T ss_pred HHHHH-HcCCeEEEeChHH
Confidence 77777 7898888887753
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.083 Score=54.05 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCC--cEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC--QLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~--d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+++....+++.++ +..+++++-++.+. +..+.+..+.++|+ |.|.|..- . + . +..-.+.++++++..+
T Consensus 70 ~~e~~~~~~r~~~---~~~l~v~~~vg~~~-~~~~~~~~Lv~ag~~~d~i~iD~a-~---g-h-~~~~~e~I~~ir~~~p 139 (326)
T PRK05458 70 DPEARIPFIKDMH---EQGLIASISVGVKD-DEYDFVDQLAAEGLTPEYITIDIA-H---G-H-SDSVINMIQHIKKHLP 139 (326)
T ss_pred CHHHHHHHHHhcc---ccccEEEEEecCCH-HHHHHHHHHHhcCCCCCEEEEECC-C---C-c-hHHHHHHHHHHHhhCC
Confidence 5666666554332 23456776555433 34455666777754 99999221 1 0 0 1123478999999885
Q ss_pred -CcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 333 -IPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 333 -iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+||++ |+|.|.+++..+. +.|+|++.+|
T Consensus 140 ~~~vi~-g~V~t~e~a~~l~-~aGad~i~vg 168 (326)
T PRK05458 140 ETFVIA-GNVGTPEAVRELE-NAGADATKVG 168 (326)
T ss_pred CCeEEE-EecCCHHHHHHHH-HcCcCEEEEC
Confidence 77776 8899999999998 7999999877
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.22 Score=50.07 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~ 332 (487)
.+.+..++..+.+..++||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+. .+
T Consensus 59 ~~~~~~~~~~~a~~~~VPValHL----DH~~~~e~i~~ai~~GftSVMiDgS~------lp~eeNi~~T~~vv~~Ah~~g 128 (284)
T PRK12737 59 TDYIVAIAEVAARKYNIPLALHL----DHHEDLDDIKKKVRAGIRSVMIDGSH------LSFEENIAIVKEVVEFCHRYD 128 (284)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEEecCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 45567777777777899999998 55555667777888899999994431 1111233444444332 24
Q ss_pred CcEEE--------cCC---------CCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 333 IPVIA--------NGN---------IQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 333 iPVi~--------nGg---------I~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.|-+ .++ .+++++++++.++||+|...++=|-..
T Consensus 129 vsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~H 180 (284)
T PRK12737 129 ASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAH 180 (284)
T ss_pred CEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccc
Confidence 44321 112 568999999999999998776654433
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.15 Score=52.74 Aligned_cols=90 Identities=20% Similarity=0.387 Sum_probs=68.0
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc-------C-----CCC-----------------------CC
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV-------D-----QRG-----------------------MN 315 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~-------~-----~~g-----------------------~~ 315 (487)
+.|.+..+-...|.....++.+..+++|+++|.+|-=+. . +.+ ..
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 357777665555667789999999999999999863110 0 000 11
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 316 ~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+...|+.++++++..++||+.- +|.+.+|++.+. +.|+|+|.+.
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~-~~G~d~I~vs 241 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAA-EYGVDGIVLS 241 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHH-HcCCCEEEEE
Confidence 13357899999999999999985 789999999888 7999999875
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.22 Score=50.03 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---C
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---L 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~ 331 (487)
..+.+..+++.+.+..++||.+.. |-....+.++...+.|++.||+.|-. +.-.-+.+..+++.+. .
T Consensus 56 ~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM~DgS~------lp~eeNi~~T~~vv~~Ah~~ 125 (282)
T TIGR01858 56 GTEYIVALCSAASTTYNMPLALHL----DHHESLDDIRQKVHAGVRSAMIDGSH------FPFAQNVKLVKEVVDFCHRQ 125 (282)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEeecCCC------CCHHHHHHHHHHHHHHHHHc
Confidence 356567777778778899999998 65555677778888999999994321 1111234444444332 3
Q ss_pred CCcEEE----cC----C---------CCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 332 TIPVIA----NG----N---------IQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 332 ~iPVi~----nG----g---------I~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+++|-+ .| + .+++++++++.++||+|...++=|-.
T Consensus 126 gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~ 177 (282)
T TIGR01858 126 DCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTA 177 (282)
T ss_pred CCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCcc
Confidence 555432 11 1 57889999999999999877665433
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.41 Score=48.08 Aligned_cols=144 Identities=17% Similarity=0.274 Sum_probs=90.1
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...++ + +. |+ ..+-..+. .-.+..|.+...++++..+ ..+++|-+-+ .+
T Consensus 72 ~VPValHLDHg~~~e~i~~a---i-~~--------GF-tSVM~DgS-~lp~eeNi~~T~~vv~~Ah-~~gv~VEaElG~v 136 (282)
T TIGR01858 72 NMPLALHLDHHESLDDIRQK---V-HA--------GV-RSAMIDGS-HFPFAQNVKLVKEVVDFCH-RQDCSVEAELGRL 136 (282)
T ss_pred CCCEEEECCCCCCHHHHHHH---H-Hc--------CC-CEEeecCC-CCCHHHHHHHHHHHHHHHH-HcCCeEEEEEEec
Confidence 579999998 5565443332 2 22 33 22222221 1123456677777777554 3477766632 22
Q ss_pred cc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--CCCHHHHHHHHhhCCCcEEEcCCCCCH-H
Q psy7343 281 YQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--LASWEHITAVRKALTIPVIANGNIQCL-A 345 (487)
Q Consensus 281 ~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~~~~~~i~~i~~~~~iPVi~nGgI~s~-~ 345 (487)
+. + ..+..++.+.++++|+|.+.|.=.|.-+. |.+ .-+++.+++|++.+++|++.-|+=..+ +
T Consensus 137 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~--yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e 214 (282)
T TIGR01858 137 GGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGL--YKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDE 214 (282)
T ss_pred CCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccC--cCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHH
Confidence 21 1 13567888888999999998843333322 555 347899999999999999877665555 4
Q ss_pred HHHHHHHhcCCcEEEeccc
Q psy7343 346 DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa 364 (487)
++.++. ..|+.-|=+++.
T Consensus 215 ~~~~ai-~~Gi~KiNi~T~ 232 (282)
T TIGR01858 215 DVRRTI-ELGICKVNVATE 232 (282)
T ss_pred HHHHHH-HcCCeEEEeCcH
Confidence 677777 788888887764
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.11 Score=53.08 Aligned_cols=97 Identities=10% Similarity=0.147 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcC--CcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG--CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G--~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+++...+.++.++.. . +.+++-++...++ .+.+..+.++| +|.|.+.-- +. ++ ..-++.++++++...
T Consensus 67 ~~E~~~sfvrk~k~~-~--L~v~~SvG~t~e~-~~r~~~lv~a~~~~d~i~~D~a---hg--~s-~~~~~~i~~i~~~~p 136 (321)
T TIGR01306 67 DEESRIPFIKDMQER-G--LFASISVGVKACE-YEFVTQLAEEALTPEYITIDIA---HG--HS-NSVINMIKHIKTHLP 136 (321)
T ss_pred CHHHHHHHHHhcccc-c--cEEEEEcCCCHHH-HHHHHHHHhcCCCCCEEEEeCc---cC--ch-HHHHHHHHHHHHhCC
Confidence 556555555554322 2 3555544544433 34455566667 799988211 00 11 123588999999998
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.|.+..|+|.|.++++.++ +.|||+|.+|
T Consensus 137 ~~~vi~GnV~t~e~a~~l~-~aGad~I~V~ 165 (321)
T TIGR01306 137 DSFVIAGNVGTPEAVRELE-NAGADATKVG 165 (321)
T ss_pred CCEEEEecCCCHHHHHHHH-HcCcCEEEEC
Confidence 8988889999999999999 7999999877
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.17 Score=54.24 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--C
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--T 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~ 332 (487)
+.+.+.++++..+ .++.-+.+-+ .+..| ++...++|++.|-|-.|.-.. -..+.+...++...+ +
T Consensus 144 ~~~~l~~l~~~a~-~lGl~~lvEv------h~~~E-l~~al~~~a~iiGiNnRdL~t-----~~vd~~~~~~l~~~ip~~ 210 (454)
T PRK09427 144 DDEQYRQLAAVAH-SLNMGVLTEV------SNEEE-LERAIALGAKVIGINNRNLRD-----LSIDLNRTRELAPLIPAD 210 (454)
T ss_pred CHHHHHHHHHHHH-HcCCcEEEEE------CCHHH-HHHHHhCCCCEEEEeCCCCcc-----ceECHHHHHHHHhhCCCC
Confidence 3556777776544 4577777765 23334 444556799999887674322 235667777777766 6
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+.+|+-+||.|++|+.++. . |+|+|.||.++|.+|+.
T Consensus 211 ~~~vseSGI~t~~d~~~~~-~-~~davLiG~~lm~~~d~ 247 (454)
T PRK09427 211 VIVISESGIYTHAQVRELS-P-FANGFLIGSSLMAEDDL 247 (454)
T ss_pred cEEEEeCCCCCHHHHHHHH-h-cCCEEEECHHHcCCCCH
Confidence 7788899999999999975 4 69999999999999874
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.32 Score=47.92 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=86.5
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeec--CCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINI--GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~--GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
..++++.|...|...+.+-.+.+++. .|.+.+.. |+ +--.+.--++.+.. +++ ++|+-+-+
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~---------FVPNitfGp~~i~~----i~~--~~p~DvHL- 82 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQ---------FCPQFTVGPWAVGQ----LPQ--TFIKDVHL- 82 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCc---------cCCccccCHHHHHH----hcc--CCCeeEEe-
Confidence 46888888888888888888877775 56554432 32 11101012343333 433 45555544
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccC----------C--------------------------------------
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVD----------Q-------------------------------------- 311 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~----------~-------------------------------------- 311 (487)
=+.+...+.+.+.++|+|.|++|.-+.. +
T Consensus 83 ---MV~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VL 159 (254)
T PRK14057 83 ---MVADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQ 159 (254)
T ss_pred ---eeCCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEE
Confidence 3346677777777777777777663200 0
Q ss_pred ----CCCCCCCCC----HHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 312 ----RGMNTGLAS----WEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 312 ----~g~~~g~~~----~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.+++.|... ++.++++++.. ++.|-.-|||+ .+.+.++. +.|||.+.+|+++..+++
T Consensus 160 vMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~-~aGad~~V~GSalF~~~d 229 (254)
T PRK14057 160 LLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLI-AQGIDRVVSGSALFRDDR 229 (254)
T ss_pred EEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHH-HCCCCEEEEChHhhCCCC
Confidence 112223221 23444444432 46688999996 56788888 799999999998765433
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.24 Score=48.81 Aligned_cols=102 Identities=16% Similarity=0.221 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhh--hccCcEEEEe-ecccc--------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHH
Q psy7343 256 WPLLTNLVSSLRQ--AVQVPVSCKI-RIYQD--------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324 (487)
Q Consensus 256 ~~~i~eiv~~v~~--~~~iPV~vKi-R~~~d--------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i 324 (487)
.+.+.++.+...+ ..++|+.+=. -.+.+ .+.....++...+.|+|.|-+ .|+| +.+.+
T Consensus 126 ~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~---------~ytg--~~e~F 194 (265)
T COG1830 126 REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT---------KYTG--DPESF 194 (265)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEee---------cCCC--ChHHH
Confidence 4444444443322 3489988721 11212 223455567788999999877 1444 34889
Q ss_pred HHHHhhCCCcEEEcCCCCC--HHHHHHHHH---hcCCcEEEeccccccC
Q psy7343 325 TAVRKALTIPVIANGNIQC--LADVEACLA---QTGVAGVMTAEGNLYN 368 (487)
Q Consensus 325 ~~i~~~~~iPVi~nGgI~s--~~da~~~l~---~~Gad~VmiGRa~l~~ 368 (487)
+++.+.+.+||+.+||=.+ .+++.++.. +.|+.|+.+||=+...
T Consensus 195 ~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~ 243 (265)
T COG1830 195 RRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQH 243 (265)
T ss_pred HHHHHhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhcc
Confidence 9999999999999998876 334444432 4699999999965544
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.24 Score=49.72 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~ 332 (487)
.+.+..+++.+.+..++||.+.. |-....+.++.+.++|.+.||+.|-. +.-.-+.+..+++.+ ..+
T Consensus 59 ~~~~~~~~~~~A~~~~VPV~lHL----DHg~~~e~i~~Ai~~GftSVM~DgS~------l~~eeNi~~T~~vv~~Ah~~g 128 (284)
T PRK09195 59 TEYLLAIVSAAAKQYHHPLALHL----DHHEKFDDIAQKVRSGVRSVMIDGSH------LPFAQNISLVKEVVDFCHRFD 128 (284)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEEeCCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 45567777777778899999997 65555677788888999999994321 111123334444433 234
Q ss_pred CcEEE--------cCC---------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 333 IPVIA--------NGN---------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 333 iPVi~--------nGg---------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+.|-+ .++ .+++++++++.++||+|...++=|
T Consensus 129 v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG 177 (284)
T PRK09195 129 VSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIG 177 (284)
T ss_pred CEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccC
Confidence 44322 112 579999999999999998776544
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.58 Score=47.07 Aligned_cols=144 Identities=17% Similarity=0.257 Sum_probs=89.8
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...++. ...|+-| -..+. .-.+..|.+...++++..+. .++.|-+-+ ++
T Consensus 74 ~VPValHLDHg~~~e~i~~ai---~~GFtSV----------M~DgS-~lp~eeNi~~T~evv~~Ah~-~gv~VEaElG~i 138 (286)
T PRK12738 74 NMPLALHLDHHESLDDIRRKV---HAGVRSA----------MIDGS-HFPFAENVKLVKSVVDFCHS-QDCSVEAELGRL 138 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHH---HcCCCeE----------eecCC-CCCHHHHHHHHHHHHHHHHH-cCCeEEEEEEee
Confidence 579999998 55655444333 2223322 22211 11124566777777775543 466665532 22
Q ss_pred cc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--CCCHHHHHHHHhhCCCcEEEcCCCCCH-H
Q psy7343 281 YQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--LASWEHITAVRKALTIPVIANGNIQCL-A 345 (487)
Q Consensus 281 ~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~~~~~~i~~i~~~~~iPVi~nGgI~s~-~ 345 (487)
++ + ..+.+++.+..+++|+|.+.|.-.|.-+. |.+ .-+++.+++|++.+++|++.-||=..+ +
T Consensus 139 gg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~--Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e 216 (286)
T PRK12738 139 GGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGL--YSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDE 216 (286)
T ss_pred CCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCC--CCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence 21 1 13678888888999999998843333322 544 347899999999999999876655444 5
Q ss_pred HHHHHHHhcCCcEEEeccc
Q psy7343 346 DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa 364 (487)
++.++. +.|..-|=+++.
T Consensus 217 ~~~kai-~~GI~KiNi~T~ 234 (286)
T PRK12738 217 FVRRTI-ELGVTKVNVATE 234 (286)
T ss_pred HHHHHH-HcCCeEEEeCcH
Confidence 677777 788888877763
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.57 Score=47.08 Aligned_cols=144 Identities=19% Similarity=0.320 Sum_probs=89.3
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...++ +...|+- +-..+. .-.+..|.+...++++..+. .++.|-+-+ ++
T Consensus 74 ~VPValHLDH~~~~e~i~~a---i~~GftS----------VMiDgS-~lp~eeNi~~T~~vv~~Ah~-~gvsVEaElG~i 138 (284)
T PRK12737 74 NIPLALHLDHHEDLDDIKKK---VRAGIRS----------VMIDGS-HLSFEENIAIVKEVVEFCHR-YDASVEAELGRL 138 (284)
T ss_pred CCCEEEECCCCCCHHHHHHH---HHcCCCe----------EEecCC-CCCHHHHHHHHHHHHHHHHH-cCCEEEEEEeec
Confidence 569999987 5554433322 2222322 222221 11224566777777775543 466665532 22
Q ss_pred cc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC--CCHHHHHHHHhhCCCcEEEcCCCCCH-H
Q psy7343 281 YQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL--ASWEHITAVRKALTIPVIANGNIQCL-A 345 (487)
Q Consensus 281 ~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~--~~~~~i~~i~~~~~iPVi~nGgI~s~-~ 345 (487)
++ + ..+.+++.+.++++|+|.+.|.-.|.-+. |.+. -+++.+++|++.+++|++.-||=..+ +
T Consensus 139 gg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~--y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e 216 (284)
T PRK12737 139 GGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGL--YKGEPKLDFERLAEIREKVSIPLVLHGASGVPDE 216 (284)
T ss_pred cCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccc--cCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence 21 1 23668888888999999998833332222 5443 47899999999999999876665544 4
Q ss_pred HHHHHHHhcCCcEEEeccc
Q psy7343 346 DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa 364 (487)
++.+++ ..|+.-|=|++.
T Consensus 217 ~~~kai-~~Gi~KiNi~T~ 234 (284)
T PRK12737 217 DVKKAI-SLGICKVNVATE 234 (284)
T ss_pred HHHHHH-HCCCeEEEeCcH
Confidence 677777 789988888875
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.14 Score=53.54 Aligned_cols=44 Identities=23% Similarity=0.482 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..+|+.++++++..++||+. .||.+.+|++.+. +.|+|+|.++
T Consensus 238 ~~~tW~~i~~lr~~~~~pviv-KgV~~~~dA~~a~-~~G~d~I~vs 281 (383)
T cd03332 238 PSLTWEDLAFLREWTDLPIVL-KGILHPDDARRAV-EAGVDGVVVS 281 (383)
T ss_pred CCCCHHHHHHHHHhcCCCEEE-ecCCCHHHHHHHH-HCCCCEEEEc
Confidence 345899999999999999998 5889999999999 7999999986
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.24 Score=49.76 Aligned_cols=100 Identities=20% Similarity=0.219 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---AL 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~ 331 (487)
..+.+..+++.+.+..++||.+.. |-....+.++.+.++|++.||+.|-. +.-.-+.+..+++.+ ..
T Consensus 58 g~~~~~~~~~~~A~~~~vPV~lHL----DH~~~~e~i~~Ai~~GftSVM~DgS~------l~~eeNi~~T~~vve~Ah~~ 127 (283)
T PRK07998 58 GYDYIYEIVKRHADKMDVPVSLHL----DHGKTFEDVKQAVRAGFTSVMIDGAA------LPFEENIAFTKEAVDFAKSY 127 (283)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC----cCCCCHHHHHHHHHcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHHHc
Confidence 467778888888888899999998 55444555666678899999994321 111123344444433 34
Q ss_pred CCcEEE----cCC-----------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 332 TIPVIA----NGN-----------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 332 ~iPVi~----nGg-----------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+++|-+ .|| .++++++.++.+++|+|...++=|
T Consensus 128 gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiG 175 (283)
T PRK07998 128 GVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIG 175 (283)
T ss_pred CCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhcc
Confidence 676621 111 479999999999999998776543
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.14 Score=49.28 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=89.4
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcce----eeccCc-----cccccCChHHHH------------
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMV----AKRGHY-----GAYLQDDWPLLT------------ 260 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i----~~~gr~-----G~~l~~d~~~i~------------ 260 (487)
..+++.=+|+.++++..+.++.+.+. ++.|||-+-.|... ..+..+ |+.-.-+.+.+.
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 45777778999999999999888776 89999887665310 000001 111111222222
Q ss_pred -----HHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCc
Q psy7343 261 -----NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIP 334 (487)
Q Consensus 261 -----eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iP 334 (487)
++++..++ .++|++ +...+..| +..+.+.|++.|-+..- +. . | ...+++.++.-+ ++|
T Consensus 94 P~~~~~vi~~a~~-~~i~~i------PG~~TptE-i~~a~~~Ga~~vKlFPa---~~--~-g--g~~~lk~l~~p~p~~~ 157 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLI------PGVSTPSE-LMLGMELGLRTFKFFPA---EA--S-G--GVKMLKALAGPFPDVR 157 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEe------CCCCCHHH-HHHHHHCCCCEEEEccc---hh--c-c--CHHHHHHHhccCCCCe
Confidence 22322222 234433 12345566 55677899999988321 10 1 1 246677777766 799
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
++..|||.. +++.+++ ..|+ .+.+|.+.|.+....
T Consensus 158 ~~ptGGV~~-~ni~~~l-~ag~-v~~vggs~L~~~~~~ 192 (212)
T PRK05718 158 FCPTGGISP-ANYRDYL-ALPN-VLCIGGSWMVPKDAI 192 (212)
T ss_pred EEEeCCCCH-HHHHHHH-hCCC-EEEEEChHhCCcchh
Confidence 999999964 8899999 5674 444555555554443
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.14 Score=51.76 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhhccCcEEEEe-eccc------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKI-RIYQ------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKi-R~~~------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~ 330 (487)
.+.+++++.. ..++|+.+=+ ..|. +.+.....++...+.|+|.|-+ .-+..+ +..+.+.++++.+.
T Consensus 155 ~l~~v~~ea~-~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv-~y~~~~-----~~g~~e~f~~vv~~ 227 (304)
T PRK06852 155 EAAQIIYEAH-KHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKV-NYPKKE-----GANPAELFKEAVLA 227 (304)
T ss_pred HHHHHHHHHH-HhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEe-cCCCcC-----CCCCHHHHHHHHHh
Confidence 3444444433 4589988611 1121 2234567778889999999988 221110 11356788888888
Q ss_pred C-CCcEEEcCCCC-CHHHHHHH----HHhcCCcEEEeccccccCc
Q psy7343 331 L-TIPVIANGNIQ-CLADVEAC----LAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 331 ~-~iPVi~nGgI~-s~~da~~~----l~~~Gad~VmiGRa~l~~P 369 (487)
. .+||+..||=. +.+++.++ ++..|+.||.+||=....|
T Consensus 228 ~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~ 272 (304)
T PRK06852 228 AGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKP 272 (304)
T ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCC
Confidence 8 99988888776 44445444 4237999999999665554
|
|
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.25 Score=51.24 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=90.5
Q ss_pred CCCeeeeeccCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR 279 (487)
..|+...+...+++.+.+.++ ..++.|..+.+..|-+... .+. ..+++.-.+.++++++.++ +.+.+-..
T Consensus 112 ~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~--~~~-----~~~~~~D~~~i~avr~~~g~~~~l~vDaN 184 (352)
T cd03325 112 RVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQW--IDT-----SKKVDAAVERVAALREAVGPDIDIGVDFH 184 (352)
T ss_pred eeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCccc--CCC-----HHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 345555454557776655444 4444467666665531100 000 0134555666777777663 34444332
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+|+..+..++++.+++.|+++|-= + . ...+++..+++++...+||.+.=.+.+..++.++++...+|.+
T Consensus 185 ~~~~~~~A~~~~~~l~~~~i~~iEe--------P-~-~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v 254 (352)
T cd03325 185 GRVSKPMAKDLAKELEPYRLLFIEE--------P-V-LPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDII 254 (352)
T ss_pred CCCCHHHHHHHHHhccccCCcEEEC--------C-C-CccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEE
Confidence 3466667888888888888777731 1 1 2236888999999999999997788999999999976678877
Q ss_pred Eec
Q psy7343 360 MTA 362 (487)
Q Consensus 360 miG 362 (487)
++-
T Consensus 255 ~~d 257 (352)
T cd03325 255 QPD 257 (352)
T ss_pred ecC
Confidence 653
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.19 Score=52.21 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=78.2
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC-CCCCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN-TGLASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~-~g~~~~~~i~~i 327 (487)
|+....+.+++.++- .++.||++|--...+.+++..+++.+.+.|..-|++-=|.....+.. ....|+..+..+
T Consensus 208 ~s~~~~n~~LL~~~a-----~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~l 282 (360)
T PRK12595 208 GARNMQNFELLKAAG-----RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPIL 282 (360)
T ss_pred CcccccCHHHHHHHH-----ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHH
Confidence 444556776665533 35899999975545677888889999999997666633333222111 233588999999
Q ss_pred HhhCCCcEEEcCCCCCH----H--HHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 328 RKALTIPVIANGNIQCL----A--DVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 328 ~~~~~iPVi~nGgI~s~----~--da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
++..++||+++-+-... . -+...+ ..||||++|=+-+ ||..-
T Consensus 283 k~~~~~PV~~d~~Hs~G~r~~~~~~a~aAv-a~GAdg~~iE~H~--dp~~a 330 (360)
T PRK12595 283 KQETHLPVMVDVTHSTGRRDLLLPTAKAAL-AIGADGVMAEVHP--DPAVA 330 (360)
T ss_pred HHHhCCCEEEeCCCCCcchhhHHHHHHHHH-HcCCCeEEEEecC--CCCCC
Confidence 99899999995444432 1 223334 5899999999877 77663
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.036 Score=56.46 Aligned_cols=113 Identities=18% Similarity=0.118 Sum_probs=66.5
Q ss_pred hcChhHHHHHHhc--CCCCCCeeeeeccC-CHHHHHHHHHhhCCc-CcEEE-ee-----------cCCCcceeeccCccc
Q psy7343 187 IADKKLRQEILMS--TPEDRPLIIQFCGN-DSKNLTEAAKLAEPH-CDGID-IN-----------IGCPQMVAKRGHYGA 250 (487)
Q Consensus 187 l~~~~~~~~~l~~--~~~~~Pv~Vqi~g~-d~~~~~~aa~~~~~~-~d~Id-iN-----------~GcP~~i~~~gr~G~ 250 (487)
-.+++...++++. .....||.|||..+ +...+++++..+.+. .++|. +| -+-|.....++..|-
T Consensus 139 g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGl 218 (310)
T PRK02506 139 AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGI 218 (310)
T ss_pred ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcC
Confidence 3456666666652 23468999999843 555666666555443 44432 23 121211001111111
Q ss_pred cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 251 YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
....-.....+.+..+.+.+ ++||++.+ .+.+.+|+++.+ .+||+.|++
T Consensus 219 SG~~i~p~al~~v~~~~~~~~~~ipIig~G----GI~s~~da~e~i-~aGA~~Vqv 269 (310)
T PRK02506 219 GGDYIKPTALANVRAFYQRLNPSIQIIGTG----GVKTGRDAFEHI-LCGASMVQV 269 (310)
T ss_pred CchhccHHHHHHHHHHHHhcCCCCCEEEEC----CCCCHHHHHHHH-HcCCCHHhh
Confidence 22222344455666676666 69999997 778899998888 689999998
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.4 Score=48.28 Aligned_cols=144 Identities=17% Similarity=0.289 Sum_probs=90.1
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee-c
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-I 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-~ 280 (487)
..||.+.+. +.|.+...++.+ . |+ ..+-..+. .-.+..|.+...++++..+ ..+++|-+-+- +
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~----~--------Gf-tSVMiDgS-~lp~eeNi~~T~~vv~~Ah-~~gv~VEaElG~v 141 (288)
T TIGR00167 77 GVPVALHLDHGASEEDCAQAVK----A--------GF-SSVMIDGS-HEPFEENIELTKKVVERAH-KMGVSVEAELGTL 141 (288)
T ss_pred CCcEEEECCCCCCHHHHHHHHH----c--------CC-CEEEecCC-CCCHHHHHHHHHHHHHHHH-HcCCEEEEEEeec
Confidence 579999998 556554444332 2 33 22222221 1122456667777776544 34676666422 2
Q ss_pred cc--c----------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--C-CCHHHHHHHHhhCCCcEEEcCCCCCH-
Q psy7343 281 YQ--D----------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--L-ASWEHITAVRKALTIPVIANGNIQCL- 344 (487)
Q Consensus 281 ~~--d----------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~-~~~~~i~~i~~~~~iPVi~nGgI~s~- 344 (487)
+. | ..+..+..+.++++|+|.+.|.-.|.-.. |.+ . -+++.+++|++.+++|++.-||=..+
T Consensus 142 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~--y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~ 219 (288)
T TIGR00167 142 GGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGV--YKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPD 219 (288)
T ss_pred cCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccc--cCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCH
Confidence 21 1 12567778888899999998843333222 433 2 47899999999999999987777666
Q ss_pred HHHHHHHHhcCCcEEEeccc
Q psy7343 345 ADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa 364 (487)
+++.+++ ..|+.-|=+++.
T Consensus 220 e~~~~ai-~~Gi~KiNi~T~ 238 (288)
T TIGR00167 220 EEIKKAI-SLGVVKVNIDTE 238 (288)
T ss_pred HHHHHHH-HcCCeEEEcChH
Confidence 4677788 688888877764
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.19 Score=52.88 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
+..+.++.+.++|+|.|.|..- . + . +....+.++++++.+ +++|++ |+|.|.++++.++ +.|||+|.+|=
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a-~---g-~-~~~~~~~v~~ik~~~p~~~vi~-g~V~T~e~a~~l~-~aGaD~I~vG~ 223 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSA-H---G-H-STRIIELVKKIKTKYPNLDLIA-GNIVTKEAALDLI-SVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECC-C---C-C-ChhHHHHHHHHHhhCCCCcEEE-EecCCHHHHHHHH-HcCCCEEEECC
Confidence 3567888899999999998322 1 0 1 223458899999887 677766 8999999999999 78999998873
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.21 Score=50.05 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH-HHHHHHHhh---CCC
Q psy7343 259 LTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW-EHITAVRKA---LTI 333 (487)
Q Consensus 259 i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~-~~i~~i~~~---~~i 333 (487)
+.+.++.+++.. ..+|.+-. ++..++ ..+.++|+|.|++..- + +.+. +.+..+++. -++
T Consensus 169 i~~av~~~r~~~~~~kIeVEv------~~leea-~~a~~agaDiI~LDn~--------~-~e~l~~~v~~l~~~~~~~~~ 232 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEV------ESLEDA-LKAAKAGADIIMLDNM--------T-PEEIREVIEALKREGLRERV 232 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEe------CCHHHH-HHHHHcCcCEEEECCC--------C-HHHHHHHHHHHHhcCcCCCE
Confidence 445555565543 34555544 344444 4455799999999221 1 1111 233333332 257
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.+.++||| +.+.+.++. .+|+|.+.+|.-...-|+
T Consensus 233 ~leaSGGI-~~~ni~~yA-~tGvD~Is~galt~sa~~ 267 (278)
T PRK08385 233 KIEVSGGI-TPENIEEYA-KLDVDVISLGALTHSVRN 267 (278)
T ss_pred EEEEECCC-CHHHHHHHH-HcCCCEEEeChhhcCCCc
Confidence 79999999 789999988 799999999975553343
|
|
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.31 Score=51.05 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=90.2
Q ss_pred CCCeeeeeccCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR 279 (487)
..|+...+...+++++.+.++ ..++.|..+-+..|-+. +..++ ..+++.-.+.++++++.++ +.+.+-..
T Consensus 113 ~i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~-----~~~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDaN 185 (382)
T PRK14017 113 RIRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEEL-----QYIDS--PRKVDAAVARVAAVREAVGPEIGIGVDFH 185 (382)
T ss_pred eeeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCc-----ccccc--HHHHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 346665555567777755444 44444665555432100 00000 1234555667777887763 44444332
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+|+..+..++++.+++.|+..|-= + . ...+++..+++++...+||.+.=.+.+..++.++++...+|.+
T Consensus 186 ~~w~~~~A~~~~~~l~~~~~~~iEe--------P-~-~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v 255 (382)
T PRK14017 186 GRVHKPMAKVLAKELEPYRPMFIEE--------P-V-LPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDII 255 (382)
T ss_pred CCCCHHHHHHHHHhhcccCCCeEEC--------C-C-CcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeE
Confidence 3466667888888888888776631 1 1 2346788999999999999998899999999999976667777
Q ss_pred Ee
Q psy7343 360 MT 361 (487)
Q Consensus 360 mi 361 (487)
.+
T Consensus 256 ~~ 257 (382)
T PRK14017 256 QP 257 (382)
T ss_pred ec
Confidence 64
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.47 Score=47.18 Aligned_cols=150 Identities=19% Similarity=0.295 Sum_probs=82.8
Q ss_pred CCCchHHHHHHHHhCCccceeccccchhhhc--Ch--hHHHHHHh-----cCCCCC-Ceeeeec-c---CCHHHH-HHHH
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVSAHQFIA--DK--KLRQEILM-----STPEDR-PLIIQFC-G---NDSKNL-TEAA 222 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~--~~--~~~~~~l~-----~~~~~~-Pv~Vqi~-g---~d~~~~-~~aa 222 (487)
.+-|....++..+.|.+.+.+.--.+...+- |. --..+++. ....+. +|++-+- + .++++. ..+.
T Consensus 21 tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~ 100 (264)
T PRK00311 21 TAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAG 100 (264)
T ss_pred eCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHH
Confidence 3456666677888888776653111111111 11 01122221 122234 4666663 3 355554 4556
Q ss_pred HhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec--------------ccc---c
Q psy7343 223 KLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI--------------YQD---V 284 (487)
Q Consensus 223 ~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~--------------~~d---~ 284 (487)
+.++++ +++|.|- |. +...+.+++++++ +|||..-+-+ +.+ .
T Consensus 101 r~~~~aGa~aVkiE----------dg---------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a 160 (264)
T PRK00311 101 RLMKEAGAHAVKLE----------GG---------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAA 160 (264)
T ss_pred HHHHHhCCeEEEEc----------Cc---------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHH
Confidence 677756 4444332 21 2344555556544 8998733222 111 2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
++..+-++.++++||+.|.+- +.+ -+.++++.+.+++|+|+-|
T Consensus 161 ~~~i~ra~a~~eAGA~~i~lE-----------~v~-~~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 161 EKLLEDAKALEEAGAFALVLE-----------CVP-AELAKEITEALSIPTIGIG 203 (264)
T ss_pred HHHHHHHHHHHHCCCCEEEEc-----------CCC-HHHHHHHHHhCCCCEEEec
Confidence 356777889999999999882 122 2788999999999999765
|
|
| >KOG0623|consensus | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.055 Score=54.50 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
...++.+++|+.|+-.|.+..-.... ....-+.++++.++..++||||++.|--++++.++.++++.||+..-+ |
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DG---sn~GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaLaA-G- 516 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDG---SNKGYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAALAA-G- 516 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCC---CCCCcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhhhc-c-
Confidence 46789999999999998873222211 222357899999999999999999999999999999999999875432 2
Q ss_pred ccCcccccCCCCCcHHHHHHHHH
Q psy7343 366 LYNPALFTGQTRPAWELASEYLD 388 (487)
Q Consensus 366 l~~P~lf~~~~~~~~~~~~~~l~ 388 (487)
+|... ..+.+.+++|+.
T Consensus 517 -----iFHR~-e~~i~dVKEyL~ 533 (541)
T KOG0623|consen 517 -----IFHRK-EVPIQDVKEYLQ 533 (541)
T ss_pred -----ceecC-ccchHHHHHHHH
Confidence 44322 223455666654
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.34 Score=48.76 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---C
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---L 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~ 331 (487)
..+.+..+++.+.+..++||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+. .
T Consensus 58 ~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM~DgS~------lp~eeNi~~T~evv~~Ah~~ 127 (286)
T PRK12738 58 ALEEIYALCSAYSTTYNMPLALHL----DHHESLDDIRRKVHAGVRSAMIDGSH------FPFAENVKLVKSVVDFCHSQ 127 (286)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEeecCCC------CCHHHHHHHHHHHHHHHHHc
Confidence 356667778888888899999998 65555667777778999999994321 1111233444444332 2
Q ss_pred CCcEEE----cC----C---------CCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 332 TIPVIA----NG----N---------IQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 332 ~iPVi~----nG----g---------I~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
++.|-+ .| + .+++++++++.++||+|...++=|-.
T Consensus 128 gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~ 179 (286)
T PRK12738 128 DCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTA 179 (286)
T ss_pred CCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcc
Confidence 444321 11 1 56899999999999999877665433
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.095 Score=54.36 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=72.4
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCcccccc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 253 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~ 253 (487)
+.+......++++ ....+.+|.++|. +.+.++..++++.+++. .|.|++..|.....+... ...
T Consensus 183 lenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~--~~~-- 258 (353)
T cd02930 183 FENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTI--ATS-- 258 (353)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccc--ccc--
Confidence 4444444445553 3344566776664 24677888999999887 899998665311111100 000
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.......+..+.+++.+++||++.+ ++.+..++.+.+++.++|.|++ ||.
T Consensus 259 ~~~~~~~~~~~~ik~~v~iPVi~~G----~i~~~~~a~~~i~~g~~D~V~~-gR~ 308 (353)
T cd02930 259 VPRGAFAWATAKLKRAVDIPVIASN----RINTPEVAERLLADGDADMVSM-ARP 308 (353)
T ss_pred CCchhhHHHHHHHHHhCCCCEEEcC----CCCCHHHHHHHHHCCCCChhHh-hHH
Confidence 0111223455667888899999997 5667888888888888999999 885
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.063 Score=55.68 Aligned_cols=108 Identities=16% Similarity=0.228 Sum_probs=66.9
Q ss_pred hhcChhHHHHHHh----cCC----CCCCeeeeecc-------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCcc
Q psy7343 186 FIADKKLRQEILM----STP----EDRPLIIQFCG-------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYG 249 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~----~~~Pv~Vqi~g-------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G 249 (487)
+.+......++++ ... .+.+|.+++-. .+.++..++++.+++. +|.|++..|..........
T Consensus 190 lenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~-- 267 (353)
T cd04735 190 LENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGR-- 267 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCC--
Confidence 4444444555553 222 34566666542 3467888899988887 8999998775322111111
Q ss_pred ccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 250 AYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 250 ~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
...++.+.. +++.+ ++||++++ ++.+..++.+.+++ |+|.|++ ||.
T Consensus 268 ---~~~~~~~~~----ik~~~~~~iPVi~~G----gi~t~e~ae~~l~~-gaD~V~~-gR~ 315 (353)
T cd04735 268 ---DDNQTIMEL----VKERIAGRLPLIAVG----SINTPDDALEALET-GADLVAI-GRG 315 (353)
T ss_pred ---cchHHHHHH----HHHHhCCCCCEEEEC----CCCCHHHHHHHHHc-CCChHHH-hHH
Confidence 112333333 44444 78999998 55577777777776 9999999 884
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.1 Score=43.70 Aligned_cols=136 Identities=10% Similarity=0.067 Sum_probs=80.3
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccC--cEEEEeec
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV--PVSCKIRI 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i--PV~vKiR~ 280 (487)
+.|+-|-+.-.+|+.+.+... ++ |+ ..++.|-.. ...+.++++.+++. +. ...+-+
T Consensus 68 ~~~~DvHLMv~~P~~~i~~~~---~a--------Ga-d~It~H~Ea-------~~~~~~~l~~Ik~~-g~~~kaGlal-- 125 (228)
T PRK08091 68 HCFKDVHLMVRDQFEVAKACV---AA--------GA-DIVTLQVEQ-------THDLALTIEWLAKQ-KTTVLIGLCL-- 125 (228)
T ss_pred CCCEEEEeccCCHHHHHHHHH---Hh--------CC-CEEEEcccC-------cccHHHHHHHHHHC-CCCceEEEEE--
Confidence 578888888888988765332 22 32 344444431 11244566666654 55 444444
Q ss_pred ccccccHHHH-HHHHHHcCCcEEEEEccccCCCCCCCCCC----CHHHHHHHHhh-----CCCcEEEcCCCCCHHHHHHH
Q psy7343 281 YQDVNKTVEY-ARMLERAGCQLLAVHGRTVDQRGMNTGLA----SWEHITAVRKA-----LTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 281 ~~d~~~~~e~-a~~le~~G~d~I~VhgRt~~~~g~~~g~~----~~~~i~~i~~~-----~~iPVi~nGgI~s~~da~~~ 350 (487)
+..+..+. ...+.. +|.|+|-.-. +++.|.. .++.++++++. .++.|-.-|||+ .+.+.++
T Consensus 126 --nP~Tp~~~i~~~l~~--vD~VLiMtV~----PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l 196 (228)
T PRK08091 126 --CPETPISLLEPYLDQ--IDLIQILTLD----PRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYL 196 (228)
T ss_pred --CCCCCHHHHHHHHhh--cCEEEEEEEC----CCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHH
Confidence 33333333 334443 8988873221 1233433 23556665543 246688899997 6788888
Q ss_pred HHhcCCcEEEeccccccCcc
Q psy7343 351 LAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~ 370 (487)
. +.|||.+.+|+++..+++
T Consensus 197 ~-~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 197 K-QHQIDWVVSGSALFSQGE 215 (228)
T ss_pred H-HCCCCEEEEChhhhCCCC
Confidence 7 799999999998765543
|
|
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.35 Score=48.48 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHH
Q psy7343 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
-|.+.+.+.++.+.+. |+ ..+..-|.+|.+..-..+.-.++++.+.+..+ +|++.+- ..+..+..+.++
T Consensus 17 iD~~~~~~li~~l~~~--------Gv-~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg-~~~~~~ai~~a~ 85 (279)
T cd00953 17 IDKEKFKKHCENLISK--------GI-DYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-KVIFQVG-SLNLEESIELAR 85 (279)
T ss_pred cCHHHHHHHHHHHHHc--------CC-cEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeC-cCCHHHHHHHHH
Confidence 3777888888776665 54 45555666676654456666677776666654 4655541 124567889999
Q ss_pred HHHHcCCcEEEEEccccCCCCCCCCC----CCHHHHHHHHhhCCCcEE-E-----cCCCCCHHHHHHHHH
Q psy7343 293 MLERAGCQLLAVHGRTVDQRGMNTGL----ASWEHITAVRKALTIPVI-A-----NGNIQCLADVEACLA 352 (487)
Q Consensus 293 ~le~~G~d~I~VhgRt~~~~g~~~g~----~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~da~~~l~ 352 (487)
.+++.|+|++++..-. |... ...++++.+.+ ++||+ + +|--.+++.+.++.+
T Consensus 86 ~a~~~Gad~v~v~~P~------y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~ 147 (279)
T cd00953 86 AAKSFGIYAIASLPPY------YFPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKK 147 (279)
T ss_pred HHHHcCCCEEEEeCCc------CCCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHh
Confidence 9999999999994321 2221 22366777777 78876 3 355567888888874
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.42 Score=48.04 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~ 332 (487)
.+.+..+++.+.+..++||.+.. |-....+.++.+.++|.+.||+.|-. +.-.-+.+..+++.+. .+
T Consensus 59 ~~~~~~~~~~~A~~~~VPValHL----DH~~~~e~i~~ai~~GftSVM~DgS~------lp~eeNi~~T~~vv~~Ah~~g 128 (284)
T PRK12857 59 IEYISAMVRTAAEKASVPVALHL----DHGTDFEQVMKCIRNGFTSVMIDGSK------LPLEENIALTKKVVEIAHAVG 128 (284)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEEEeCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 45566777777777899999998 55445566677777899999995431 1111233444444332 34
Q ss_pred CcEEE----cC----C---------CCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 333 IPVIA----NG----N---------IQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 333 iPVi~----nG----g---------I~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+.|-+ .| + .++++++.++.+++|+|...++=|-
T Consensus 129 vsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt 178 (284)
T PRK12857 129 VSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGT 178 (284)
T ss_pred CEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCc
Confidence 44321 11 2 5689999999999999988766543
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.21 Score=54.37 Aligned_cols=75 Identities=21% Similarity=0.411 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec--
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA-- 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG-- 362 (487)
+..+-++.|.++|+|.|.+.. +.. . ....|+.++++++.. +.+|++ |+|.|.++++.++ +.|||+|.+|
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~-~~g----~-~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~-~aGaD~i~vg~g 319 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDS-SQG----D-SIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLI-QAGVDGLRVGMG 319 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeC-CCC----C-cHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHH-HcCcCEEEECCC
Confidence 557888889999999999932 110 1 112469999999987 577776 8999999999999 7999999775
Q ss_pred cccccC
Q psy7343 363 EGNLYN 368 (487)
Q Consensus 363 Ra~l~~ 368 (487)
.|....
T Consensus 320 ~G~~~~ 325 (505)
T PLN02274 320 SGSICT 325 (505)
T ss_pred CCcccc
Confidence 554433
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.44 Score=45.10 Aligned_cols=129 Identities=18% Similarity=0.219 Sum_probs=72.0
Q ss_pred eeeccCCHHHHHHHHHhhCCc-CcEEEee-cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc
Q psy7343 208 IQFCGNDSKNLTEAAKLAEPH-CDGIDIN-IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285 (487)
Q Consensus 208 Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN-~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~ 285 (487)
+.+...|++.+.+.++.+.+. +|.|++- +.+|.- .+.....++++++++..+.|+.+-+ -..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~------------~~~~~~~~~v~~i~~~~~~~v~v~l----m~~ 66 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFV------------PNLTFGPPVLEALRKYTDLPIDVHL----MVE 66 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC------------CCcccCHHHHHHHHhcCCCcEEEEe----eeC
Confidence 344456888888888888776 8888885 222210 0111223445556655566754322 112
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCC-HHHHHHHHHhcCCcEEEecc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC-LADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s-~~da~~~l~~~Gad~VmiGR 363 (487)
+..++++.+.+.|+|+|.+|+.... .....++.+++ .++.++..-...+ .+.++++. .++|.+.++.
T Consensus 67 ~~~~~~~~~~~~gadgv~vh~~~~~--------~~~~~~~~~~~-~g~~~~~~~~~~t~~e~~~~~~--~~~d~i~~~~ 134 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITVHPEASE--------HIHRLLQLIKD-LGAKAGIVLNPATPLEFLEYVL--PDVDLVLLMS 134 (210)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCch--------hHHHHHHHHHH-cCCcEEEEECCCCCHHHHHHHH--hhCCEEEEEE
Confidence 4567788888999999999875211 11233444443 3444333223334 34444443 4689988754
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.22 Score=49.96 Aligned_cols=124 Identities=10% Similarity=0.040 Sum_probs=76.4
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|.+..-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 20 D~~~~~~~i~~l~~~--------Gv-~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i~~a 89 (280)
T PLN02417 20 DLEAYDSLVNMQIEN--------GA-EGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS-NSTREAIHAT 89 (280)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC-ccHHHHHHHH
Confidence 667777777766555 55 4555666667655334555566666655554 4788887621 1455788889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-E-----cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-A-----NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~da~~~l~ 352 (487)
+..++.|+|++++..-.. .. .+...-.++++.+.+.. ||+ + .|--.+++.+.++.+
T Consensus 90 ~~a~~~Gadav~~~~P~y-~~--~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 90 EQGFAVGMHAALHINPYY-GK--TSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred HHHHHcCCCEEEEcCCcc-CC--CCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 999999999999954311 00 11112346666776654 875 3 354556777777663
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.43 Score=47.97 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---h
Q psy7343 256 WPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---A 330 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~ 330 (487)
.+.+..+++.+.+..+ +||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+ .
T Consensus 60 ~~~~~~~~~~~A~~~~~~vPV~lHL----DHg~~~e~i~~ai~~GftSVM~DgS~------l~~eeNi~~T~~vve~Ah~ 129 (286)
T PRK08610 60 FYTVVKMVEGLMHDLNITIPVAIHL----DHGSSFEKCKEAIDAGFTSVMIDASH------SPFEENVATTKKVVEYAHE 129 (286)
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHHH
Confidence 5556777777766665 8999998 55445666677888999999995431 111123344444433 2
Q ss_pred CCCcEEE----cC----C-------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 331 LTIPVIA----NG----N-------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 331 ~~iPVi~----nG----g-------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+++|-+ .| + .+++++++++.++||+|...++=|
T Consensus 130 ~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiG 178 (286)
T PRK08610 130 KGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALG 178 (286)
T ss_pred cCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecc
Confidence 3555432 11 1 479999999999999998776544
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.15 Score=51.23 Aligned_cols=123 Identities=19% Similarity=0.206 Sum_probs=77.4
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-..+.-.++++.+.+.. ++||++.+-- .+..+..+.+
T Consensus 20 d~~~~~~~i~~l~~~--------Gv-~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~st~~~i~~a 89 (289)
T PF00701_consen 20 DEDALKRLIDFLIEA--------GV-DGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA-NSTEEAIELA 89 (289)
T ss_dssp -HHHHHHHHHHHHHT--------TS-SEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcc-hhHHHHHHHH
Confidence 667777777766555 44 3445555556554333444455666555544 5788887621 1456889999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..-. |.... ..++++.+.+.+++||+. | |---+.+.+.++.+
T Consensus 90 ~~a~~~Gad~v~v~~P~------~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 90 RHAQDAGADAVLVIPPY------YFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp HHHHHTT-SEEEEEEST------SSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred HHHhhcCceEEEEeccc------cccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc
Confidence 99999999999994321 22222 247788888889999874 3 55667777777663
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.8 Score=46.20 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCC-CcceeeccCccccccCChHHHHHHHHHHhhh-ccCcEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGC-PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-VQVPVS 275 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~Gc-P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-~~iPV~ 275 (487)
..+.||++-+- | .++.+..+.++.++++ +.+|+|.=.. |.... |-.-|..-+.+.+...+-+++++++ .+.++.
T Consensus 73 ~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg-~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~ 151 (290)
T TIGR02321 73 TVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTS-LRTDGRQELVRIEEFQGKIAAATAARADRDFV 151 (290)
T ss_pred ccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccc-cccCCCccccCHHHHHHHHHHHHHhCCCCCEE
Confidence 34789999986 2 2334677778877776 7777775332 22110 1001212123555555555555543 366788
Q ss_pred EEeecc-----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC--CcEEEcC---CCCCHH
Q psy7343 276 CKIRIY-----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT--IPVIANG---NIQCLA 345 (487)
Q Consensus 276 vKiR~~-----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~--iPVi~nG---gI~s~~ 345 (487)
++-|.. .+.++..+-++...++|+|.|.|++. ..+.+.++++.+.++ +|+.... ...+.+
T Consensus 152 I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~----------~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~ 221 (290)
T TIGR02321 152 VIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSR----------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEA 221 (290)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCC----------CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHH
Confidence 888863 23356677778888999999999653 124567888888775 5786543 233443
Q ss_pred HHHHHHHhcC-CcEEEecc
Q psy7343 346 DVEACLAQTG-VAGVMTAE 363 (487)
Q Consensus 346 da~~~l~~~G-ad~VmiGR 363 (487)
+ +- +.| ...|..|.
T Consensus 222 ~---l~-~lg~~~~v~~g~ 236 (290)
T TIGR02321 222 D---IA-ALSKVGIVIYGN 236 (290)
T ss_pred H---HH-HhcCCcEEEECh
Confidence 3 33 445 66666663
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.2 Score=50.86 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=77.4
Q ss_pred chhhhcChhHHHHHHh--cCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEE-ee-cC-CC---------cceeeccC
Q psy7343 183 AHQFIADKKLRQEILM--STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGID-IN-IG-CP---------QMVAKRGH 247 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~Id-iN-~G-cP---------~~i~~~gr 247 (487)
+..+-++++.+.++++ +.....||.|||.- +.+++.++|+.++++ .|+|- +| .. -+ ..-..+|+
T Consensus 139 ~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P-~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GG 217 (310)
T COG0167 139 GRALGQDPELLEKLLEAVKAATKVPVFVKLAP-NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGG 217 (310)
T ss_pred hhhhccCHHHHHHHHHHHHhcccCceEEEeCC-CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCC
Confidence 4455558888888885 34456899999987 778999999998887 67764 34 11 11 10011222
Q ss_pred ccccccCChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 248 YGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 248 ~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
..+ ..=.+...++++.+.+.++ +||+.-+ .+.+..|+.+.+. +||+.|.|
T Consensus 218 LSG--~~ikp~al~~v~~l~~~~~~~ipIIGvG----GI~s~~DA~E~i~-aGA~~vQv 269 (310)
T COG0167 218 LSG--PPLKPIALRVVAELYKRLGGDIPIIGVG----GIETGEDALEFIL-AGASAVQV 269 (310)
T ss_pred cCc--ccchHHHHHHHHHHHHhcCCCCcEEEec----CcCcHHHHHHHHH-cCCchhee
Confidence 211 2223455677777887775 9999987 7788888887765 79999998
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.18 Score=54.75 Aligned_cols=69 Identities=23% Similarity=0.404 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..+.++.+.++|+|.|.|..- +. .+ ...++.++++++.. ++||++ |+|.|.+++..++ +.|||+|.+|
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a---~G--~s-~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~-~aGad~I~vg 310 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSS---QG--NS-IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLI-DAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecC---CC--Cc-hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHH-HcCCCEEEEC
Confidence 4478888899999999998321 10 11 12368999999986 788888 9999999999999 7999999865
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.2 Score=43.34 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHH-----------HHHHHHHhcCC
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLA-----------DVEACLAQTGV 356 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~-----------da~~~l~~~Ga 356 (487)
..++...+.|+|++.+.+ ...+.+++.. .-.+...+||+ ++ ...+++ +.|+
T Consensus 139 ~~a~~a~~~g~dgvv~~~---------------~~~~~ir~~~~~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai-~~Ga 201 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSA---------------QEAAAIREATGPDFLLVTPGIR-PAGSDAGDQKRVMTPAQAI-AAGS 201 (230)
T ss_pred HHHHHHHHcCCeEEEeCh---------------HHHHHHHhhcCCceEEEcCCcC-CCCCCcchHHHHhCHHHHH-HcCC
Confidence 455667788999987721 1134455443 33446668886 33 356667 6899
Q ss_pred cEEEeccccccCccc
Q psy7343 357 AGVMTAEGNLYNPAL 371 (487)
Q Consensus 357 d~VmiGRa~l~~P~l 371 (487)
|++++||++...++-
T Consensus 202 d~iVvGR~I~~a~dP 216 (230)
T PRK00230 202 DYIVVGRPITQAADP 216 (230)
T ss_pred CEEEECCcccCCCCH
Confidence 999999998877554
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.23 Score=51.90 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
..+|+.++++++..+.||+. .+|.|.+|++.++ +.|+|+|.++
T Consensus 231 ~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~-~~Gvd~I~Vs 273 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVI-KGILDPEDARDAV-RFGADGIVVS 273 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHH-hCCCCEEEEC
Confidence 45899999999999999998 6899999999999 7999999876
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.53 Score=47.35 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---
Q psy7343 255 DWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK--- 329 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~--- 329 (487)
..+.+..+++.+.+..+ +||.+.. |-....+.+..+.++|.+.||+.|-. +.-.-+.+..+++.+
T Consensus 59 ~~~~~~~~~~~~a~~~~~~VPV~lHL----DHg~~~e~i~~ai~~GftSVM~DgS~------lp~eeNi~~Trevv~~Ah 128 (285)
T PRK07709 59 GFKTVVAMVKALIEEMNITVPVAIHL----DHGSSFEKCKEAIDAGFTSVMIDASH------HPFEENVETTKKVVEYAH 128 (285)
T ss_pred CHHHHHHHHHHHHHHcCCCCcEEEEC----CCCCCHHHHHHHHHcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHH
Confidence 35566777777766655 7999987 55555667777788999999995431 111123444444433
Q ss_pred hCCCcEEE-------c-CC-------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 330 ALTIPVIA-------N-GN-------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 330 ~~~iPVi~-------n-Gg-------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
..+++|-+ . ++ .++++++.++.++||+|...++=|
T Consensus 129 ~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiG 178 (285)
T PRK07709 129 ARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALG 178 (285)
T ss_pred HcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeec
Confidence 23555432 1 12 589999999999999998876544
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.89 Score=45.77 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---AL 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~ 331 (487)
+.+.+..++..+.+..++||.+.. |-....+.++...+.|++.||+-|-. +...-+.+..+++.+ ..
T Consensus 58 ~~~~~~~~~~~~a~~~~vpV~lHl----DH~~~~e~i~~Ai~~GftSVm~D~S~------l~~eeNi~~t~~v~~~a~~~ 127 (286)
T PRK06801 58 SLESLVEAVKFEAARHDIPVVLNL----DHGLHFEAVVRALRLGFSSVMFDGST------LEYEENVRQTREVVKMCHAV 127 (286)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCcEEEEcCCC------CCHHHHHHHHHHHHHHHHHc
Confidence 467777888888888899999997 55555677777788999999993321 111123344444433 23
Q ss_pred CCcE------EEc----------CC--CCCHHHHHHHHHhcCCcEEEec
Q psy7343 332 TIPV------IAN----------GN--IQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 332 ~iPV------i~n----------Gg--I~s~~da~~~l~~~Gad~VmiG 362 (487)
+++| ++. |. .++++++.++.+++|+|.+.++
T Consensus 128 gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAva 176 (286)
T PRK06801 128 GVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVA 176 (286)
T ss_pred CCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEec
Confidence 4444 111 11 4567999999988999999884
|
|
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.49 Score=49.40 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=85.1
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccc----cCChHHHHHHHHHHhhhcc-
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL----QDDWPLLTNLVSSLRQAVQ- 271 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l----~~d~~~i~eiv~~v~~~~~- 271 (487)
.++|++..++ +-|++.+.+.+..+... .|+|-. .+..|.+- .++.+.+.+.++.+.+.++
T Consensus 128 ~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikd----------de~~ge~~~~~~eER~~~v~~av~~a~~~TG~ 197 (367)
T cd08205 128 HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKD----------DELLADQPYAPFEERVRACMEAVRRANEETGR 197 (367)
T ss_pred CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeec----------cccccCcccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 3678877765 45888998888776665 455422 22223321 2344555566665554443
Q ss_pred -CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE--cC---------
Q psy7343 272 -VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA--NG--------- 339 (487)
Q Consensus 272 -iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~--nG--------- 339 (487)
.++.+|+ ..+.++..+.++.+++.|+|++|+..- +.| +.....+++..++||.+ ++
T Consensus 198 ~~~y~~ni--t~~~~e~i~~a~~a~~~Gad~vmv~~~-------~~g---~~~~~~l~~~~~lpi~~H~a~~ga~~~~~~ 265 (367)
T cd08205 198 KTLYAPNI--TGDPDELRRRADRAVEAGANALLINPN-------LVG---LDALRALAEDPDLPIMAHPAFAGALSRSPD 265 (367)
T ss_pred cceEEEEc--CCCHHHHHHHHHHHHHcCCCEEEEecc-------ccc---ccHHHHHHhcCCCeEEEccCcccccccCCC
Confidence 4556666 223467888899999999999999321 222 23344555555777774 11
Q ss_pred CCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 340 NIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 340 gI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+.+..-..++.+..|+|.+..+.
T Consensus 266 ~g~~~~~~~kl~RlaGad~~~~~~ 289 (367)
T cd08205 266 YGSHFLLLGKLMRLAGADAVIFPG 289 (367)
T ss_pred CcCCHHHHHHHHHHcCCCccccCC
Confidence 234455566677668999987764
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.84 E-value=1 Score=45.32 Aligned_cols=144 Identities=19% Similarity=0.326 Sum_probs=88.8
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...++.+ ..|+ .+-..|. .-.+..|-+...++++..+ ..++.|-+-+ .+
T Consensus 74 ~VPValHLDH~~~~e~i~~ai~---~Gft----------SVM~DgS-~lp~eeNi~~T~~vv~~Ah-~~gvsVEaElG~v 138 (284)
T PRK12857 74 SVPVALHLDHGTDFEQVMKCIR---NGFT----------SVMIDGS-KLPLEENIALTKKVVEIAH-AVGVSVEAELGKI 138 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHHH---cCCC----------eEEEeCC-CCCHHHHHHHHHHHHHHHH-HcCCEEEEEeeec
Confidence 569999998 556554443333 2232 2222221 1122456667777776554 3466665532 22
Q ss_pred cc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC--CCHHHHHHHHhhCCCcEEEcCCCCCH-H
Q psy7343 281 YQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL--ASWEHITAVRKALTIPVIANGNIQCL-A 345 (487)
Q Consensus 281 ~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~--~~~~~i~~i~~~~~iPVi~nGgI~s~-~ 345 (487)
+. + ..++.+..+.++++|+|.+.|.-.|.-.. |.+. -+++.+++|++.+++|++.-||=..+ +
T Consensus 139 gg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~--y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e 216 (284)
T PRK12857 139 GGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGP--YKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDE 216 (284)
T ss_pred CCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccc--cCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence 21 1 13677888888999999998733332222 5443 47899999999999999876665544 4
Q ss_pred HHHHHHHhcCCcEEEeccc
Q psy7343 346 DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa 364 (487)
++.++. ..|+.-|=+++.
T Consensus 217 ~~~~ai-~~Gi~KiNi~T~ 234 (284)
T PRK12857 217 AIRKAI-SLGVRKVNIDTN 234 (284)
T ss_pred HHHHHH-HcCCeEEEeCcH
Confidence 677777 788888877764
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.14 Score=47.39 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhcc-C-cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh----h-C
Q psy7343 259 LTNLVSSLRQAVQ-V-PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK----A-L 331 (487)
Q Consensus 259 i~eiv~~v~~~~~-i-PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~----~-~ 331 (487)
+.+.++++++..+ . +|.+.. ++.++ ++.+.++|+|.|++..- ..+.++++.+ . .
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv------~~~ee-~~ea~~~g~d~I~lD~~------------~~~~~~~~v~~l~~~~~ 126 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEV------ENLEE-AEEALEAGADIIMLDNM------------SPEDLKEAVEELRELNP 126 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEE------SSHHH-HHHHHHTT-SEEEEES-------------CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCceEEEEc------CCHHH-HHHHHHhCCCEEEecCc------------CHHHHHHHHHHHhhcCC
Confidence 4556666666553 2 255544 34444 44555689999999211 2233444333 2 2
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
++.+.++|||+ .+.+.++. .+|+|.+.+|.....-|+
T Consensus 127 ~v~ie~SGGI~-~~ni~~ya-~~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 127 RVKIEASGGIT-LENIAEYA-KTGVDVISVGSLTHSAPP 163 (169)
T ss_dssp TSEEEEESSSS-TTTHHHHH-HTT-SEEEECHHHHSBE-
T ss_pred cEEEEEECCCC-HHHHHHHH-hcCCCEEEcChhhcCCcc
Confidence 68899999995 67788887 799999999976554443
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.58 Score=46.63 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=75.4
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCC-CCCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT-GLASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~-g~~~~~~i~~i 327 (487)
|+....+.+++.++ ..++.||++|--...+.+++..+++.+...|..-+++-=|+......|. ...++..+..+
T Consensus 117 ga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~l 191 (266)
T PRK13398 117 GSRNMQNFELLKEV-----GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVI 191 (266)
T ss_pred CcccccCHHHHHHH-----hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHH
Confidence 44445666666653 2468999999765557778888899999999876665334221111122 12366788888
Q ss_pred HhhCCCcEEEc-CCCCC-----HHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 328 RKALTIPVIAN-GNIQC-----LADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 328 ~~~~~iPVi~n-GgI~s-----~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++..+.||++. .-... ...+...+ ..||||+||=+-+--+-.+
T Consensus 192 k~~~~~pV~~D~sHs~G~~~~v~~~~~aAv-a~Ga~Gl~iE~H~~pd~a~ 240 (266)
T PRK13398 192 KELSHLPIIVDPSHATGRRELVIPMAKAAI-AAGADGLMIEVHPEPEKAL 240 (266)
T ss_pred HhccCCCEEEeCCCcccchhhHHHHHHHHH-HcCCCEEEEeccCCccccC
Confidence 88889999993 32223 34444555 5899999988755544444
|
|
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=94.83 E-value=4.6 Score=40.01 Aligned_cols=183 Identities=12% Similarity=0.118 Sum_probs=94.9
Q ss_pred ccCCCchHHHHHHHHhCCccceecccc--chhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCc-CcE
Q psy7343 156 MVDASELPWRLLSRRYGSHLCYTPMVS--AHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPH-CDG 231 (487)
Q Consensus 156 ma~~td~~fr~i~~~~Ga~l~~t~~v~--~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~-~d~ 231 (487)
..|+++..=...+.++|++.+. +|. .+.=.-+++...++.+..+....-.|=++ ..++++..++ +++. .|.
T Consensus 51 ICGit~~eda~~a~~~GaD~iG--fIf~~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~---~~~~~ld~ 125 (256)
T PLN02363 51 MCGITSARDAAMAVEAGADFIG--MILWPKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRA---ADSSDLEL 125 (256)
T ss_pred ECCCCcHHHHHHHHHcCCCEEE--EecCCCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHH---HHhcCCCE
Confidence 3456665545667788886532 221 11111233445556553332111123333 3455555444 4444 566
Q ss_pred EEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC
Q psy7343 232 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311 (487)
Q Consensus 232 IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~ 311 (487)
|+|| |. .+++.+.+ ++. .++++--+++.. ..+..+.........+|++.+-...
T Consensus 126 VQLH----------G~------e~~~~~~~----l~~--~~~iikai~v~~-~~~~~~~~~~~~~~~~D~~LlDs~~--- 179 (256)
T PLN02363 126 VQLH----------GN------GSRAAFSR----LVR--ERKVIYVLNANE-DGKLLNVVPEEDCHLADWILVDSAT--- 179 (256)
T ss_pred EEEC----------CC------CCHHHHHH----hhc--CCcEEEEEEECc-hHHHHHHHHhhccccCCEEEEeCCC---
Confidence 6665 32 23444333 332 255655554431 1111111111112348999885431
Q ss_pred CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 312 ~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
|+..-..+|+.+....-....|++.+|||. ++.+.++++..+..||-+.+|+=..|-.
T Consensus 180 -GGtG~t~DW~~l~~~~~~~~~p~iLAGGL~-peNV~~ai~~~~P~GVDVsSGVE~~pG~ 237 (256)
T PLN02363 180 -GGSGKGFNWQNFKLPSVRSRNGWLLAGGLT-PENVHEAVSLLKPTGVDVSSGICGPDGI 237 (256)
T ss_pred -CCCCCccCHHHhcccccccCCCEEEECCCC-HHHHHHHHHhcCCcEEEeCCcccCCCCc
Confidence 222223578766411111256899999995 7888888877889999999998777764
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.43 Score=47.97 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hC
Q psy7343 256 WPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---AL 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~ 331 (487)
.+.+...++.+.+..+ +||.+.. |-....+.++...+.|++.||+-+-. +.-.-+.+..+++.+ ..
T Consensus 58 ~~~~~~~~~~~a~~~~~vpv~lhl----DH~~~~e~i~~ai~~Gf~sVmid~s~------l~~~eni~~t~~v~~~a~~~ 127 (282)
T TIGR01859 58 YKMAVAMVKTLIERMSIVPVALHL----DHGSSYESCIKAIKAGFSSVMIDGSH------LPFEENLALTKKVVEIAHAK 127 (282)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEC----CCCCCHHHHHHHHHcCCCEEEECCCC------CCHHHHHHHHHHHHHHHHHc
Confidence 4556777777777777 9999987 54445667777778899999993221 111112344444443 33
Q ss_pred CCcEEE---------------cCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 332 TIPVIA---------------NGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 332 ~iPVi~---------------nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+++|-+ ....++++++.++.+++|+|.+.++
T Consensus 128 gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs 173 (282)
T TIGR01859 128 GVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAA 173 (282)
T ss_pred CCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeec
Confidence 555441 0226799999999977999999954
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.38 Score=48.34 Aligned_cols=126 Identities=12% Similarity=0.089 Sum_probs=76.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. +|+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 19 D~~~~~~~i~~l~~~-------~Gv-~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai~~a 89 (288)
T cd00954 19 NEDVLRAIVDYLIEK-------QGV-DGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQELA 89 (288)
T ss_pred CHHHHHHHHHHHHhc-------CCC-CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHHHHH
Confidence 666677666655332 023 3344455556554334555556666555544 4788886511 2455778999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEE------cCCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIA------NGNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~------nGgI~s~~da~~~l 351 (487)
+.+++.|+|++++..-.. .. .+...-.++++.+.+.+ ++||+. .|---+++.+.++.
T Consensus 90 ~~a~~~Gad~v~~~~P~y-~~--~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~ 153 (288)
T cd00954 90 KHAEELGYDAISAITPFY-YK--FSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELF 153 (288)
T ss_pred HHHHHcCCCEEEEeCCCC-CC--CCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 999999999999843211 00 11112357788888888 899873 35556777777776
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.43 Score=47.78 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~ 332 (487)
.+.+..+++.+.+..++||.+.. |-....+.+....++|.+.||+.|-. +.-.-+.+..+++.+. .+
T Consensus 54 ~~~~~~~~~~~a~~~~VPV~lHL----DH~~~~~~i~~ai~~GftSVMiD~S~------l~~eeNi~~t~~vv~~ah~~g 123 (276)
T cd00947 54 LELLVAMVKAAAERASVPVALHL----DHGSSFELIKRAIRAGFSSVMIDGSH------LPFEENVAKTKEVVELAHAYG 123 (276)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCCEEEeCCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 56677778777777899999998 54444455566678899999994321 1111233444444332 24
Q ss_pred CcEEE--------cCC-------CCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 333 IPVIA--------NGN-------IQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 333 iPVi~--------nGg-------I~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+.|-+ .++ .+++++++++.+++|+|...++=|-.
T Consensus 124 v~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~ 172 (276)
T cd00947 124 VSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTS 172 (276)
T ss_pred CeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCcc
Confidence 44322 111 56899999999999999888765544
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.65 Score=46.78 Aligned_cols=144 Identities=17% Similarity=0.314 Sum_probs=88.7
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+++. +.+.+...++.+. .|+-| -..+. .-.+..|.+...++++..+ ..++.|-+-+ ++
T Consensus 73 ~vPValHLDH~~~~e~i~~ai~~---GftSV----------M~DgS-~l~~eeNi~~T~~vv~~ah-~~gv~VEaElG~i 137 (287)
T PF01116_consen 73 SVPVALHLDHGKDFEDIKRAIDA---GFTSV----------MIDGS-ALPFEENIAITREVVEYAH-AYGVSVEAELGHI 137 (287)
T ss_dssp TSEEEEEEEEE-SHHHHHHHHHH---TSSEE----------EEE-T-TS-HHHHHHHHHHHHHHHH-HTT-EEEEEESBS
T ss_pred CCCEEeecccCCCHHHHHHHHHh---Ccccc----------cccCC-cCCHHHHHHHHHHHHHhhh-hhCCEEEEEeeee
Confidence 478888887 5565554444433 23222 22221 1122445666677776554 3466666643 22
Q ss_pred cc--c---c--------ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--C--CCHHHHHHHHhhC-CCcEEEcCCCC
Q psy7343 281 YQ--D---V--------NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--L--ASWEHITAVRKAL-TIPVIANGNIQ 342 (487)
Q Consensus 281 ~~--d---~--------~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~--~~~~~i~~i~~~~-~iPVi~nGgI~ 342 (487)
+. | . .++.++.+.++++|+|.+.|.=.|.-.. |.+ . -+++.+++|++.+ ++|++.-||=.
T Consensus 138 ~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~--y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG 215 (287)
T PF01116_consen 138 GGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGM--YKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSG 215 (287)
T ss_dssp SSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSS--BSSSSSTC--HHHHHHHHHHHHTSEEEESSCTT
T ss_pred eccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccc--cCCCCCcccCHHHHHHHHHhcCCCCEEEECCCC
Confidence 21 1 1 2678888888999999998843333322 555 3 3689999999999 99999888776
Q ss_pred CHH-HHHHHHHhcCCcEEEeccc
Q psy7343 343 CLA-DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 343 s~~-da~~~l~~~Gad~VmiGRa 364 (487)
.++ ++.+++ ..|+.-|=+++.
T Consensus 216 ~~~e~~~~ai-~~Gi~KiNi~T~ 237 (287)
T PF01116_consen 216 LPDEQIRKAI-KNGISKINIGTE 237 (287)
T ss_dssp S-HHHHHHHH-HTTEEEEEESHH
T ss_pred CCHHHHHHHH-HcCceEEEEehH
Confidence 666 788888 789988888874
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.37 Score=49.96 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh--C
Q psy7343 256 WPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--L 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--~ 331 (487)
++.-.+.++++++.++ +.+.+-..-+|+..+..++++.+++.++..+- | + . ...+++..+++++. +
T Consensus 165 ~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~~E-------e-P-~-~~~d~~~~~~l~~~~~~ 234 (352)
T cd03328 165 PRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGVTWFE-------E-P-V-SSDDLAGLRLVRERGPA 234 (352)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCcchhh-------C-C-C-ChhhHHHHHHHHhhCCC
Confidence 4445566777887763 44544333356777889999999998776552 1 1 1 22468889999999 8
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++||.+.=.+.+..|+.++++...+|.+++
T Consensus 235 ~iPIa~gE~~~~~~~~~~li~~~a~div~~ 264 (352)
T cd03328 235 GMDIAAGEYAYTLAYFRRLLEAHAVDVLQA 264 (352)
T ss_pred CCCEEecccccCHHHHHHHHHcCCCCEEec
Confidence 899999888999999999996666787753
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.3 Score=45.00 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---
Q psy7343 255 DWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--- 330 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--- 330 (487)
..+.+..+++.+.+..+ +||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+.
T Consensus 57 g~~~~~~~~~~~a~~~~~VPValHL----DHg~~~e~i~~ai~~GftSVM~DgS~------l~~eeNi~~T~~vve~Ah~ 126 (307)
T PRK05835 57 GIDMAVGMVKIMCERYPHIPVALHL----DHGTTFESCEKAVKAGFTSVMIDASH------HAFEENLELTSKVVKMAHN 126 (307)
T ss_pred ChHHHHHHHHHHHHhcCCCeEEEEC----CCCCCHHHHHHHHHcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHHH
Confidence 35566677777777775 9999998 65555777778888999999995431 1111233444444332
Q ss_pred CCCcEEE----cC----C---------CCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 331 LTIPVIA----NG----N---------IQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 331 ~~iPVi~----nG----g---------I~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
.++.|-+ .| + .++++++.++.++||+|...++=|-....
T Consensus 127 ~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~ 182 (307)
T PRK05835 127 AGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGA 182 (307)
T ss_pred cCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccc
Confidence 2444321 11 1 56789999999999999877665544433
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.65 Score=47.80 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=76.6
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC-CCCCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN-TGLASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~-~g~~~~~~i~~i 327 (487)
|+..+.+.+++.++- .++.||.+|--...+.+++...++.+...|.+.+++-=|+......| ....|+..+..+
T Consensus 183 gAr~~~N~~LL~~va-----~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~l 257 (335)
T PRK08673 183 GARNMQNFDLLKEVG-----KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVI 257 (335)
T ss_pred CcccccCHHHHHHHH-----cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHH
Confidence 444556778776643 35899999976555677888888899899987666633422111112 234577889999
Q ss_pred HhhCCCcEEEcCCCCCH------HHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 328 RKALTIPVIANGNIQCL------ADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 328 ~~~~~iPVi~nGgI~s~------~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++..+.|||+.-+-.+. ..+.... ..||||++|-+-.--+-.+
T Consensus 258 k~~~~lPVi~d~sH~~G~~~~v~~~a~AAv-A~GAdGliIE~H~~pd~al 306 (335)
T PRK08673 258 KKLTHLPVIVDPSHATGKRDLVEPLALAAV-AAGADGLIVEVHPDPEKAL 306 (335)
T ss_pred HHhcCCCEEEeCCCCCccccchHHHHHHHH-HhCCCEEEEEecCCcccCC
Confidence 99889999874333332 2334445 6899999998654333333
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.63 Score=46.03 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=83.5
Q ss_pred CCCchHHHHHHHHhCCccceeccccchhhhcChh----HHHHHHh-----cCCCCCC-eeeeec-c---CCHHHHHHH-H
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK----LRQEILM-----STPEDRP-LIIQFC-G---NDSKNLTEA-A 222 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~----~~~~~l~-----~~~~~~P-v~Vqi~-g---~d~~~~~~a-a 222 (487)
.+-|.....+..+.|.+.+.+.--.+...+-.++ -..+++. ....+.| |++-+- + +++++..+. .
T Consensus 18 ~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~ 97 (254)
T cd06557 18 TAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAA 97 (254)
T ss_pred eCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHH
Confidence 3446666677888888776653111111111111 1222221 2234567 666553 2 457776554 5
Q ss_pred HhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc--------------cc---cc
Q psy7343 223 KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--------------QD---VN 285 (487)
Q Consensus 223 ~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~--------------~d---~~ 285 (487)
+.++++ |+ ..+...|. ....+.+++++++ ++||..-+-+. .+ .+
T Consensus 98 r~~~~a--------Ga-~aVkiEd~---------~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~ 158 (254)
T cd06557 98 RLMKEA--------GA-DAVKLEGG---------AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAE 158 (254)
T ss_pred HHHHHh--------CC-eEEEEcCc---------HHHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCCHHHHH
Confidence 566656 43 22222221 2444555555543 78887432221 11 23
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
+..+-++.++++|||.|.+- +.+ -+.++++.+.+++|+|+-|
T Consensus 159 ~~i~ra~a~~~AGA~~i~lE-----------~v~-~~~~~~i~~~v~iP~igiG 200 (254)
T cd06557 159 RLLEDALALEEAGAFALVLE-----------CVP-AELAKEITEALSIPTIGIG 200 (254)
T ss_pred HHHHHHHHHHHCCCCEEEEc-----------CCC-HHHHHHHHHhCCCCEEEec
Confidence 55677888999999999882 122 3688999999999999765
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.11 Score=49.32 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=79.8
Q ss_pred CeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcc---ee-eccC----------------------ccccccCChH
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM---VA-KRGH----------------------YGAYLQDDWP 257 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~---i~-~~gr----------------------~G~~l~~d~~ 257 (487)
+++.=+++.++++..+.++.+.+. ...|||.+-.|.. +. .+.. .|+.+.-.|-
T Consensus 9 ~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 9 KIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp SEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC
Confidence 455556666666666666655443 6666666655431 00 0000 1111111233
Q ss_pred HHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEE
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVI 336 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi 336 (487)
.-.++++..++ .++|++=- ..+..|+...+ ++|++.|-+..-.. +.| ..+++.++.-+ +++++
T Consensus 89 ~~~~v~~~~~~-~~i~~iPG------~~TptEi~~A~-~~G~~~vK~FPA~~-----~GG---~~~ik~l~~p~p~~~~~ 152 (196)
T PF01081_consen 89 FDPEVIEYARE-YGIPYIPG------VMTPTEIMQAL-EAGADIVKLFPAGA-----LGG---PSYIKALRGPFPDLPFM 152 (196)
T ss_dssp --HHHHHHHHH-HTSEEEEE------ESSHHHHHHHH-HTT-SEEEETTTTT-----TTH---HHHHHHHHTTTTT-EEE
T ss_pred CCHHHHHHHHH-cCCcccCC------cCCHHHHHHHH-HCCCCEEEEecchh-----cCc---HHHHHHHhccCCCCeEE
Confidence 33344443332 25555432 23555655444 68999998832110 111 46788888766 79999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
..|||.. +++.+.+ +.|+.+|.+|+.+..+.+
T Consensus 153 ptGGV~~-~N~~~~l-~ag~~~vg~Gs~L~~~~~ 184 (196)
T PF01081_consen 153 PTGGVNP-DNLAEYL-KAGAVAVGGGSWLFPKDL 184 (196)
T ss_dssp EBSS--T-TTHHHHH-TSTTBSEEEESGGGSHHH
T ss_pred EcCCCCH-HHHHHHH-hCCCEEEEECchhcCHHH
Confidence 9999975 7899999 799999999986655443
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.61 Score=46.85 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~ 332 (487)
.+.+..++....+..++||.+.. |-....+.++.+.+.|++.||+-+-. ....-+.+..+++++ ..+
T Consensus 59 ~~~~~~~~~~~a~~~~vpv~lHl----DH~~~~e~i~~Al~~G~tsVm~d~s~------~~~~eni~~t~~v~~~a~~~g 128 (281)
T PRK06806 59 LHLIGPLMVAAAKQAKVPVAVHF----DHGMTFEKIKEALEIGFTSVMFDGSH------LPLEENIQKTKEIVELAKQYG 128 (281)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEEEcCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 44555566666666789999987 55555667777778899999993221 111123344444433 335
Q ss_pred CcEEEc----C---------C--CCCHHHHHHHHHhcCCcEEEe--ccccc
Q psy7343 333 IPVIAN----G---------N--IQCLADVEACLAQTGVAGVMT--AEGNL 366 (487)
Q Consensus 333 iPVi~n----G---------g--I~s~~da~~~l~~~Gad~Vmi--GRa~l 366 (487)
+||-+- | | .++++++.++.+.+|+|.+.+ |..+-
T Consensus 129 v~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg 179 (281)
T PRK06806 129 ATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHG 179 (281)
T ss_pred CeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCC
Confidence 554322 2 1 478999999987899999999 55433
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.29 Score=52.53 Aligned_cols=69 Identities=20% Similarity=0.397 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..+-++.+.++|+|.|.|... +. . ...-++.++++++.. ++||++ |+|.|.+++..++ +.|||+|-+|
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a---~g--~-~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~-~aGad~i~vg 293 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSS---HG--H-SIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALI-DAGADGLRVG 293 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECC---CC--c-HhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHH-HhCCCEEEEC
Confidence 4456667888899999999321 11 1 122458899999884 899998 9999999999999 7899999865
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.27 Score=53.08 Aligned_cols=100 Identities=23% Similarity=0.318 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEE--ec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVM--TA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~Vm--iG 362 (487)
+..+.++.+.+.|+|.|.+..-.. . +..-++.+++||+.. +++|++ |+|.|.+.++.++ +.|||+|- ||
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~-----~-~~~~~~~i~~ik~~~p~~~v~a-gnv~t~~~a~~l~-~aGad~v~vgig 298 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHG-----H-QEKMLEALRAVRALDPGVPIVA-GNVVTAEGTRDLV-EAGADIVKVGVG 298 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCC-----c-cHHHHHHHHHHHHHCCCCeEEe-eccCCHHHHHHHH-HcCCCEEEECcc
Confidence 567888899999999998832111 1 223468999999987 788887 9999999999999 68999976 44
Q ss_pred cccccCcccccCCCCCcHHHHHHHHHHHHHc
Q psy7343 363 EGNLYNPALFTGQTRPAWELASEYLDLVAQY 393 (487)
Q Consensus 363 Ra~l~~P~lf~~~~~~~~~~~~~~l~~~~~~ 393 (487)
.|-+---....+...+....+.+..+.+..+
T Consensus 299 ~gsictt~~~~~~~~p~~~av~~~~~~~~~~ 329 (479)
T PRK07807 299 PGAMCTTRMMTGVGRPQFSAVLECAAAAREL 329 (479)
T ss_pred CCcccccccccCCchhHHHHHHHHHHHHHhc
Confidence 5445444455554444455555544544454
|
|
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.16 Score=46.57 Aligned_cols=68 Identities=24% Similarity=0.330 Sum_probs=57.0
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
|........+.+++.+.|.|-| +.| .--..++++.+.+++|||+.|=|.+-|++.+++ +.||-+|.-.
T Consensus 106 DS~Al~~~~~~i~~~~pD~iEv----------LPG-v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al-~aGA~avSTs 173 (181)
T COG1954 106 DSIALEKGIKQIEKSEPDFIEV----------LPG-VMPKVIKEITEKTHIPIIAGGLIETEEEVREAL-KAGAVAVSTS 173 (181)
T ss_pred cHHHHHHHHHHHHHcCCCEEEE----------cCc-ccHHHHHHHHHhcCCCEEeccccccHHHHHHHH-HhCcEEEeec
Confidence 5556677777888899999999 445 445789999999999999999999999999999 7898887644
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.2 Score=42.93 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=78.6
Q ss_pred CCeeeeecc----CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 204 RPLIIQFCG----NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 204 ~Pv~Vqi~g----~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
.-|++|... .++++..++++.+.++ |. ..+.. ..+ +.++++++.+++||+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~a~a~~~~--------G~-~~~~~---------~~~----~~i~~i~~~~~~Pil~~~~ 64 (221)
T PRK01130 7 LIVSCQALPGEPLHSPEIMAAMALAAVQG--------GA-VGIRA---------NGV----EDIKAIRAVVDVPIIGIIK 64 (221)
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHC--------CC-eEEEc---------CCH----HHHHHHHHhCCCCEEEEEe
Confidence 346667652 3556677778777666 33 11111 113 4455677778999985544
Q ss_pred cc-cc--c--ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 280 IY-QD--V--NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 280 ~~-~d--~--~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
-. ++ . ....+.++.+.++|+|.|.+..+... . ..+....+.++++++..++|++. ++.|.+++.++. ..
T Consensus 65 ~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~-~--p~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~-~~ 138 (221)
T PRK01130 65 RDYPDSEVYITPTLKEVDALAAAGADIIALDATLRP-R--PDGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQ-KL 138 (221)
T ss_pred cCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCC-C--CCCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHH-Hc
Confidence 11 01 1 12345678889999998877433110 0 01122246666666545777775 678999998777 78
Q ss_pred CCcEEEec
Q psy7343 355 GVAGVMTA 362 (487)
Q Consensus 355 Gad~VmiG 362 (487)
|+|.+.++
T Consensus 139 G~d~i~~~ 146 (221)
T PRK01130 139 GFDFIGTT 146 (221)
T ss_pred CCCEEEcC
Confidence 99999874
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.26 Score=47.00 Aligned_cols=78 Identities=24% Similarity=0.312 Sum_probs=62.0
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
+++.=+|.. +.++..+.++.+.+.|+..|-|.-| .+...+.|+++++..+--+++.|.|.|.+++++++
T Consensus 5 ~vv~Vir~~-~~~~a~~ia~al~~gGi~~iEit~~---------tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai- 73 (201)
T PRK06015 5 PVIPVLLID-DVEHAVPLARALAAGGLPAIEITLR---------TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAA- 73 (201)
T ss_pred CEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEeCC---------CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHH-
Confidence 455545533 6778899999999999999999533 33345889999887765679999999999999999
Q ss_pred hcCCcEEEe
Q psy7343 353 QTGVAGVMT 361 (487)
Q Consensus 353 ~~Gad~Vmi 361 (487)
+.|++.++.
T Consensus 74 ~aGA~FivS 82 (201)
T PRK06015 74 KAGSRFIVS 82 (201)
T ss_pred HcCCCEEEC
Confidence 789998873
|
|
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.53 Score=47.17 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCc
Q psy7343 259 LTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIP 334 (487)
Q Consensus 259 i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iP 334 (487)
+.+.++.+++..+ .+|.+-. ++..++. .+.++|+|.|++.. + +.+.+++..+.+ ..+
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv------~tleea~-ea~~~gaDiI~LDn--------~----s~e~l~~av~~~~~~~~ 240 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEV------DTLDQLE-EALELGVDAVLLDN--------M----TPDTLREAVAIVAGRAI 240 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEe------CCHHHHH-HHHHcCCCEEEeCC--------C----CHHHHHHHHHHhCCCce
Confidence 4455566666553 4455543 3445444 44578999999921 1 234444444333 567
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+.++|||+ .+.+.++- .+|+|.+.+|.--.
T Consensus 241 leaSGGI~-~~ni~~yA-~tGVD~Is~Galth 270 (281)
T PRK06106 241 TEASGRIT-PETAPAIA-ASGVDLISVGWLTH 270 (281)
T ss_pred EEEECCCC-HHHHHHHH-hcCCCEEEeChhhc
Confidence 99999995 78888887 79999999997444
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.38 Score=49.81 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
..+|+.++++++..++||+.- ||.+++|++.+. +.|+|+|.+
T Consensus 207 ~~~~~~l~~lr~~~~~PvivK-gv~~~~dA~~a~-~~G~d~I~v 248 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVK-GIQSPEDADVAI-NAGADGIWV 248 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEe-cCCCHHHHHHHH-HcCCCEEEE
Confidence 347999999999999999986 589999999988 799999988
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.34 Score=46.26 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=63.2
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
||+.-+|.. +.++....++.+.+.|++.|-|.=| .+.-.+.|+.+++...--+|+.|-|.|++++.++.
T Consensus 14 ~vI~Vlr~~-~~e~a~~~a~Ali~gGi~~IEITl~---------sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~- 82 (211)
T COG0800 14 PVVPVIRGD-DVEEALPLAKALIEGGIPAIEITLR---------TPAALEAIRALAKEFPEALIGAGTVLNPEQARQAI- 82 (211)
T ss_pred CeeEEEEeC-CHHHHHHHHHHHHHcCCCeEEEecC---------CCCHHHHHHHHHHhCcccEEccccccCHHHHHHHH-
Confidence 455444443 7788999999999999999999534 33446899999998887789999999999999999
Q ss_pred hcCCcEEE
Q psy7343 353 QTGVAGVM 360 (487)
Q Consensus 353 ~~Gad~Vm 360 (487)
..|++.+.
T Consensus 83 ~aGa~fiV 90 (211)
T COG0800 83 AAGAQFIV 90 (211)
T ss_pred HcCCCEEE
Confidence 78999876
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.38 Score=50.09 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
..+|+.++++++..++||+.= ||.+.+|++.+. +.|+|+|.|+-
T Consensus 214 ~~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~-~~Gvd~I~VS~ 257 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVK-GPQCPEDADRAL-KAGASGIWVTN 257 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHH-HcCcCEEEECC
Confidence 357999999999999999985 699999999999 79999997753
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.46 Score=47.75 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCc
Q psy7343 259 LTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIP 334 (487)
Q Consensus 259 i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iP 334 (487)
+.+.++.+|+..+ .+|.+- .++.++ ++.+.++|+|.|++.. + +.+.++++.+.+ ++.
T Consensus 183 i~~av~~~r~~~~~~~kIeVE------v~tlee-a~~a~~agaDiImLDn--------m----spe~l~~av~~~~~~~~ 243 (290)
T PRK06559 183 VQKAIAQARAYAPFVKMVEVE------VESLAA-AEEAAAAGADIIMLDN--------M----SLEQIEQAITLIAGRSR 243 (290)
T ss_pred HHHHHHHHHHhCCCCCeEEEE------CCCHHH-HHHHHHcCCCEEEECC--------C----CHHHHHHHHHHhcCceE
Confidence 3455555665543 334443 334444 4455578999999921 1 233344433332 577
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+.++|||+ .+.+.++. .+|+|.+.+|.-...-|+
T Consensus 244 leaSGGI~-~~ni~~yA-~tGVD~Is~galthsa~~ 277 (290)
T PRK06559 244 IECSGNID-MTTISRFR-GLAIDYVSSGSLTHSAKS 277 (290)
T ss_pred EEEECCCC-HHHHHHHH-hcCCCEEEeCccccCCcc
Confidence 89999995 78888887 799999999975443343
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=1.7 Score=43.65 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH---hhCCCcE
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR---KALTIPV 335 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~---~~~~iPV 335 (487)
+..++..+.+..++||.+.. |-....+.++.+.+.|++.||+-+-. +.-.-+.+..+++. ...+++|
T Consensus 56 ~~~~~~~~a~~~~vPV~lHL----DHg~~~e~i~~ai~~Gf~SVM~D~S~------l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 56 FFAYVRERAKRSPVPFVIHL----DHGATIEDVMRAIRCGFTSVMIDGSL------LPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHHHcCCeE
Confidence 55666666677799999987 55445566667778899999994331 11112344445554 3334443
Q ss_pred EE----c-C---C---------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 336 IA----N-G---N---------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 336 i~----n-G---g---------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
-+ . | + .++++++.++.+.+|+|.+.++=|
T Consensus 126 E~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiG 171 (283)
T PRK08185 126 EGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIG 171 (283)
T ss_pred EEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccC
Confidence 21 1 1 1 568999999998899999888433
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.35 Score=48.76 Aligned_cols=109 Identities=11% Similarity=0.104 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecc-cccccHHHHHHHHHHcCCcEEEEEcccc-CCCCCCCCCC--C-HHHHHHHH
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIY-QDVNKTVEYARMLERAGCQLLAVHGRTV-DQRGMNTGLA--S-WEHITAVR 328 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~-~d~~~~~e~a~~le~~G~d~I~VhgRt~-~~~g~~~g~~--~-~~~i~~i~ 328 (487)
-.++.+.+.++.|.+.+++||++-+--| ++..+....++.++++|+.+|.|-.... ...|...|.. . -+.+.+|+
T Consensus 61 l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~ 140 (292)
T PRK11320 61 TTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIK 140 (292)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHH
Confidence 3577778888888888999999988665 3555677779999999999999944321 1122222221 1 14444444
Q ss_pred h---hC-CCcEEEcCC--CCC---HHHHHHH---HHhcCCcEEEec
Q psy7343 329 K---AL-TIPVIANGN--IQC---LADVEAC---LAQTGVAGVMTA 362 (487)
Q Consensus 329 ~---~~-~iPVi~nGg--I~s---~~da~~~---l~~~Gad~VmiG 362 (487)
. .. +.+++.+.. ... .+++.+- ..+.|||+|.+-
T Consensus 141 Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~ 186 (292)
T PRK11320 141 AAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPE 186 (292)
T ss_pred HHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEec
Confidence 3 22 333443322 221 3443221 225799999984
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.2 Score=47.81 Aligned_cols=88 Identities=24% Similarity=0.364 Sum_probs=65.9
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l 351 (487)
.+++.=+|.. +.++..+.++.+.+.|++.|-|.-|+ +...+.++++++...--+++.|.|.|.+++++++
T Consensus 8 ~~liaVlr~~-~~e~a~~~~~al~~~Gi~~iEit~~t---------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~ 77 (204)
T TIGR01182 8 AKIVPVIRID-DVDDALPLAKALIEGGLRVLEVTLRT---------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAV 77 (204)
T ss_pred CCEEEEEecC-CHHHHHHHHHHHHHcCCCEEEEeCCC---------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHH
Confidence 3455545443 67788999999999999999995432 3345889999887754578889999999999999
Q ss_pred HhcCCcEEEeccccccCccccc
Q psy7343 352 AQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 352 ~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
+.||+.++. -+ .||.+.+
T Consensus 78 -~aGA~Fivs-P~--~~~~v~~ 95 (204)
T TIGR01182 78 -DAGAQFIVS-PG--LTPELAK 95 (204)
T ss_pred -HcCCCEEEC-CC--CCHHHHH
Confidence 799999853 22 2665543
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.79 Score=47.75 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=85.7
Q ss_pred CCCCeeeeec---cCCHHHHHHHHHhhCCc-CcEEEe--ecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCc
Q psy7343 202 EDRPLIIQFC---GNDSKNLTEAAKLAEPH-CDGIDI--NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVP 273 (487)
Q Consensus 202 ~~~Pv~Vqi~---g~d~~~~~~aa~~~~~~-~d~Idi--N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iP 273 (487)
.++|++..+. |-+++.+.+.+..+... .|.|-- |+|.+... .+.++.+.+.+.++...+.+ .++
T Consensus 124 ~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~--------p~~eRv~~v~~av~~a~~eTG~~~~ 195 (364)
T cd08210 124 PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPFA--------PFEERVKACQEAVAEANAETGGRTL 195 (364)
T ss_pred CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccCC--------CHHHHHHHHHHHHHHHHhhcCCcce
Confidence 3678865543 78999999988776665 555522 12221110 11233445555555555444 357
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcEEEc----CCCC------
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPVIAN----GNIQ------ 342 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~n----GgI~------ 342 (487)
+.+|+ ..+.++..+-++.++++|++++|+.. ...-|..+..+++... +||.+- |-+.
T Consensus 196 y~~Ni--ta~~~em~~ra~~a~~~Ga~~vMv~~----------~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~i 263 (364)
T cd08210 196 YAPNV--TGPPTQLLERARFAKEAGAGGVLIAP----------GLTGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGI 263 (364)
T ss_pred EEEec--CCCHHHHHHHHHHHHHcCCCEEEeec----------ccchHHHHHHHHhcCCCcEEEEccccccccccCCCcc
Confidence 77787 23345777888889999999999921 1122556777777777 888753 2222
Q ss_pred -CHHHHHHHHHhcCCcEEEecc
Q psy7343 343 -CLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 343 -s~~da~~~l~~~Gad~VmiGR 363 (487)
..--..++.+..|+|.++.+.
T Consensus 264 s~~~~~~kl~RlaGad~~~~~~ 285 (364)
T cd08210 264 SHALLFGTLFRLAGADAVIFPN 285 (364)
T ss_pred cHHHHHHHHHHHhCCCEEEeCC
Confidence 112356666668999886543
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.31 Score=50.69 Aligned_cols=90 Identities=23% Similarity=0.297 Sum_probs=65.6
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEc-------cc-----cCCC---------------CC---------
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG-------RT-----VDQR---------------GM--------- 314 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vhg-------Rt-----~~~~---------------g~--------- 314 (487)
+.|.+..+-...|.+...+..+..+++|+++|.||- |. .... +.
T Consensus 109 ~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~ 188 (356)
T PF01070_consen 109 GGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENN 188 (356)
T ss_dssp TSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG----
T ss_pred cCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCccccccccccc
Confidence 466777665556777889999999999999999954 11 0000 00
Q ss_pred -------------------CCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 315 -------------------NTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 315 -------------------~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.....+|+.++++++..++|||.= ||.+.+|++++. +.|+|++.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivK-gv~~~~da~~~~-~~G~~~i~vs 253 (356)
T PF01070_consen 189 EAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVK-GVLSPEDAKRAV-DAGVDGIDVS 253 (356)
T ss_dssp -CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEE-EE-SHHHHHHHH-HTT-SEEEEE
T ss_pred ccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEE-ecccHHHHHHHH-hcCCCEEEec
Confidence 012237899999999999999985 679999999999 7999999987
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.8 Score=48.61 Aligned_cols=124 Identities=16% Similarity=0.127 Sum_probs=82.4
Q ss_pred cCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeecccccccHH
Q psy7343 212 GNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 212 g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~ 288 (487)
+.+++++.+.++ ..++.+..+.+..| .+++.-.+.++++++.++ +.+.+-.--+|+..+..
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~ 257 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAI 257 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 446666655444 44444555544332 134544566777888763 33444332346777889
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL---TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~---~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++++.+++.++..+- | + . ...+++..+++++.+ ++||.+.-.+.+..++.++++...+|.+++
T Consensus 258 ~~~~~L~~~~l~~iE-------E-P-~-~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~ 323 (415)
T cd03324 258 EWVKQLAEFKPWWIE-------E-P-T-SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQI 323 (415)
T ss_pred HHHHHhhccCCCEEE-------C-C-C-CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEe
Confidence 999999998887663 1 1 1 234678888999888 699988778999999999996666787753
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.67 Score=42.97 Aligned_cols=128 Identities=15% Similarity=0.115 Sum_probs=75.5
Q ss_pred CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc---ccccHHH
Q psy7343 214 DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ---DVNKTVE 289 (487)
Q Consensus 214 d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~---d~~~~~e 289 (487)
|.+.+.+.++.+.+. .++|.++. +.+..+.+.+... ++||++++.... ...+..+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~~-~~~v~~~v~~~~~~~~~~~~~~ 69 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAGS-DVPVIVVVGFPTGLTTTEVKVA 69 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCCC-CCeEEEEecCCCCCCcHHHHHH
Confidence 677778887776555 55555542 3333333322210 488888773321 0356788
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCC--CCCCHHHHHHHHhhC--CCcEEE-c--CCCCCHHHHHHH---HHhcCCcEE
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNT--GLASWEHITAVRKAL--TIPVIA-N--GNIQCLADVEAC---LAQTGVAGV 359 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~--g~~~~~~i~~i~~~~--~iPVi~-n--GgI~s~~da~~~---l~~~Gad~V 359 (487)
.++.+.+.|+|+++++.-.... .+ .....+.++++.+.+ ++|++. | +.-.+.+...++ .+..|+++|
T Consensus 70 ~a~~a~~~Gad~i~v~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~i 146 (201)
T cd00945 70 EVEEAIDLGADEIDVVINIGSL---KEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFI 146 (201)
T ss_pred HHHHHHHcCCCEEEEeccHHHH---hCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 8899999999999995321100 01 011247777888874 899874 2 222256666554 346799999
Q ss_pred Eecccc
Q psy7343 360 MTAEGN 365 (487)
Q Consensus 360 miGRa~ 365 (487)
=...+.
T Consensus 147 K~~~~~ 152 (201)
T cd00945 147 KTSTGF 152 (201)
T ss_pred EeCCCC
Confidence 776553
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.17 Score=48.09 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=58.2
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
+++.=+|.. +.++..+.++.+.+.|+..+-|.-|+ +.-.+.++++++...--+++.|.|.|.+++++++
T Consensus 9 ~iiaVir~~-~~~~a~~~~~al~~gGi~~iEiT~~t---------~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~- 77 (196)
T PF01081_consen 9 KIIAVIRGD-DPEDAVPIAEALIEGGIRAIEITLRT---------PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAI- 77 (196)
T ss_dssp SEEEEETTS-SGGGHHHHHHHHHHTT--EEEEETTS---------TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHH-
T ss_pred CEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEecCC---------ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHH-
Confidence 455555544 67889999999999999999996453 2345888888887765689999999999999999
Q ss_pred hcCCcEEEe
Q psy7343 353 QTGVAGVMT 361 (487)
Q Consensus 353 ~~Gad~Vmi 361 (487)
+.||+.++.
T Consensus 78 ~aGA~FivS 86 (196)
T PF01081_consen 78 AAGAQFIVS 86 (196)
T ss_dssp HHT-SEEEE
T ss_pred HcCCCEEEC
Confidence 789998874
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.77 Score=46.27 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh--
Q psy7343 255 DWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA-- 330 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~-- 330 (487)
..+.+..++....+.. ++||.+.+ |-....+.++...+.|.+.||+.|-. +.-.-+.+..+++.+.
T Consensus 59 g~~~~~~~~~~~a~~~~~~VPV~lHL----DHg~~~e~i~~ai~~GftSVMiDgS~------lp~eeNi~~T~~vv~~Ah 128 (288)
T TIGR00167 59 GLGAISAMVKAMSEAYPYGVPVALHL----DHGASEEDCAQAVKAGFSSVMIDGSH------EPFEENIELTKKVVERAH 128 (288)
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEC----CCCCCHHHHHHHHHcCCCEEEecCCC------CCHHHHHHHHHHHHHHHH
Confidence 3667777777777777 89999998 55545566777778899999994321 1111233444444332
Q ss_pred -CCCcEEEc--------CC---------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 331 -LTIPVIAN--------GN---------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 331 -~~iPVi~n--------Gg---------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+++|-+- ++ .+++++++++.++||+|...++=|
T Consensus 129 ~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG 180 (288)
T TIGR00167 129 KMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIG 180 (288)
T ss_pred HcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccC
Confidence 35554321 11 568899999999999998887654
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.63 Score=46.65 Aligned_cols=93 Identities=20% Similarity=0.211 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CC
Q psy7343 258 LLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TI 333 (487)
Q Consensus 258 ~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~i 333 (487)
-+.+.++.+|+..+ .+|.+-. ++..++.+ +.++|+|.||+.. + +.+.+++..+.+ ..
T Consensus 178 ~i~~av~~~r~~~~~~~kIeVEv------~slee~~e-a~~~gaDiImLDn--------~----s~e~l~~av~~~~~~~ 238 (281)
T PRK06543 178 DLTEALRHVRAQLGHTTHVEVEV------DRLDQIEP-VLAAGVDTIMLDN--------F----SLDDLREGVELVDGRA 238 (281)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEe------CCHHHHHH-HHhcCCCEEEECC--------C----CHHHHHHHHHHhCCCe
Confidence 35566666666653 3455543 34455444 4478999999921 1 233344333322 35
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.+.++|||+ .+.+.++. .+|+|.+.+|.--..-|++
T Consensus 239 ~leaSGgI~-~~ni~~yA-~tGVD~Is~galths~~~~ 274 (281)
T PRK06543 239 IVEASGNVN-LNTVGAIA-STGVDVISVGALTHSVRAL 274 (281)
T ss_pred EEEEECCCC-HHHHHHHH-hcCCCEEEeCccccCCccc
Confidence 788999995 78888887 7999999999754444544
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.47 Score=48.92 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=72.0
Q ss_pred chhhhcChhHHHHHHhcC---------CCCCCeeeeeccC-CHHHHHHHHHhhCCc-CcEEEeecCCCcc-eee----cc
Q psy7343 183 AHQFIADKKLRQEILMST---------PEDRPLIIQFCGN-DSKNLTEAAKLAEPH-CDGIDINIGCPQM-VAK----RG 246 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~~~---------~~~~Pv~Vqi~g~-d~~~~~~aa~~~~~~-~d~IdiN~GcP~~-i~~----~g 246 (487)
+.....+++...++++.. ....||.|||..+ +.+++.++++.++++ .|+|-+--.-+.. ... ..
T Consensus 181 ~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~ 260 (335)
T TIGR01036 181 GLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSD 260 (335)
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccC
Confidence 333456666666666421 1138999999853 345778888877666 7776532111110 110 00
Q ss_pred Cccc-cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 247 HYGA-YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 247 r~G~-~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.+|+ ..........+.+..+.+.+ ++|+++-+ .+.+..|+.+.+. +||+.|.| ++.
T Consensus 261 ~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~G----GI~~~~da~e~l~-aGA~~Vqv-~ta 319 (335)
T TIGR01036 261 ETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVG----GISSAQDALEKIR-AGASLLQI-YSG 319 (335)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEEC----CCCCHHHHHHHHH-cCCcHHHh-hHH
Confidence 1121 11222344556666676666 58999987 7888999988887 79999999 553
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.34 Score=46.64 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=61.6
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
+++.=+|. .+.++..++++.+.+.|++.|-|.-+ .+.-.+.++++++...--+++.|-|.+.++++..+
T Consensus 16 ~~iaV~r~-~~~~~a~~i~~al~~~Gi~~iEitl~---------~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~- 84 (212)
T PRK05718 16 PVVPVIVI-NKLEDAVPLAKALVAGGLPVLEVTLR---------TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAI- 84 (212)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHcCCCEEEEecC---------CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHH-
Confidence 45544543 37788999999999999999999322 22335788999887765689999999999999999
Q ss_pred hcCCcEEEe
Q psy7343 353 QTGVAGVMT 361 (487)
Q Consensus 353 ~~Gad~Vmi 361 (487)
+.||+.++.
T Consensus 85 ~aGA~Fivs 93 (212)
T PRK05718 85 EAGAQFIVS 93 (212)
T ss_pred HcCCCEEEC
Confidence 799998874
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.59 Score=47.03 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=66.3
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC-CCCCCC-----CC-HHHHHHH
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-GMNTGL-----AS-WEHITAV 327 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~-----~~-~~~i~~i 327 (487)
.++...+.++.|...+++||++.+--|.+..+....++.++++|+.+|.|--.+...+ +.+.+. .. -+.+.+|
T Consensus 62 ~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI 141 (285)
T TIGR02320 62 SWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKI 141 (285)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHH
Confidence 4666667788888888999999876665666778889999999999999933321111 111111 11 1333433
Q ss_pred ---Hhh---CCCcEEEcCCC----CCHHHHHHH---HHhcCCcEEEec
Q psy7343 328 ---RKA---LTIPVIANGNI----QCLADVEAC---LAQTGVAGVMTA 362 (487)
Q Consensus 328 ---~~~---~~iPVi~nGgI----~s~~da~~~---l~~~Gad~VmiG 362 (487)
++. .+++|++-=|. ...+++.+- ..+.|||+|++=
T Consensus 142 ~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 142 RAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 333 25677765222 234544332 225899999984
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.38 Score=49.73 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=72.3
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc---ccCCCCCC-CCCCCHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR---TVDQRGMN-TGLASWEHI 324 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR---t~~~~g~~-~g~~~~~~i 324 (487)
|+..+.|.+++.++ . .++.||.+|--...+.+++...++.+.+.|...|++-=| |.... | ....|+..+
T Consensus 191 ga~~~~n~~LL~~v----a-~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~--y~~~~~dl~ai 263 (352)
T PRK13396 191 GARNMQNFSLLKKV----G-AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQ--YTRNTLDLSVI 263 (352)
T ss_pred CcccccCHHHHHHH----H-ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCC--CCCCCcCHHHH
Confidence 34445677765553 3 358999999766667788899999999999977776444 32211 2 245688999
Q ss_pred HHHHhhCCCcEEEcC----CCCC--HHHHHHHHHhcCCcEEEecc
Q psy7343 325 TAVRKALTIPVIANG----NIQC--LADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 325 ~~i~~~~~iPVi~nG----gI~s--~~da~~~l~~~Gad~VmiGR 363 (487)
..+++..++|||+.- |-++ ..-+...+ ..||||++|=+
T Consensus 264 ~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAv-a~GAdGliIE~ 307 (352)
T PRK13396 264 PVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAI-AAGTDSLMIEV 307 (352)
T ss_pred HHHHHhhCCCEEECCcccCCcHHHHHHHHHHHH-hhCCCeEEEEe
Confidence 999999899998752 2221 12233334 57999999865
|
|
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.92 Score=47.68 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=80.9
Q ss_pred CHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
+++++.+.++ ..++.+..+-+..|- .+++.-.+.++++++.+ ++.+.+-.--+|+..+..++
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~ 224 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAY 224 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence 5565554443 445446555554331 23444456667777776 34455433335677788888
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCC----cEEE
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGV----AGVM 360 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Ga----d~Vm 360 (487)
++.+++.++..|- | + . ...+++..+++++.+++||.+.=.+.+..++.++++...+ |.++
T Consensus 225 ~~~l~~~~~~~iE-------e-P-~-~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~ 288 (385)
T cd03326 225 AKALAPYGLRWYE-------E-P-G-DPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQ 288 (385)
T ss_pred HHHhhCcCCCEEE-------C-C-C-CccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEE
Confidence 8999888877663 1 1 1 2347889999999999999998899999999999965444 6664
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.5 Score=44.74 Aligned_cols=135 Identities=12% Similarity=0.226 Sum_probs=82.3
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCcccc--ccCChHHHHHHHHHHhhhccCcEEEEe-
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY--LQDDWPLLTNLVSSLRQAVQVPVSCKI- 278 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~--l~~d~~~i~eiv~~v~~~~~iPV~vKi- 278 (487)
..||.+.+. +.+.+...+ .++..|+-| -.. ||. +..|-+...++++..+ ..++.|-+-+
T Consensus 85 ~VPV~lHLDHg~~~e~i~~---ai~~GftSV----------MiD---~S~lp~eeNI~~T~evv~~Ah-~~GvsVEaElG 147 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKD---CIDSGFSSV----------MID---GSHLPYEENVALTKKVVEYAH-QFDVTVEGELG 147 (321)
T ss_pred CCcEEEECCCCCCHHHHHH---HHHcCCCEE----------Eee---CCCCCHHHHHHHHHHHHHHHH-HcCCeEEEEEe
Confidence 568999987 555544332 222223322 222 222 2445666777776554 4466666532
Q ss_pred eccc---c-------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-------CCCHHHHHHHHhhC-CCcEEEcCC
Q psy7343 279 RIYQ---D-------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-------LASWEHITAVRKAL-TIPVIANGN 340 (487)
Q Consensus 279 R~~~---d-------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-------~~~~~~i~~i~~~~-~iPVi~nGg 340 (487)
+++. + ..+.++..+.++++|+|.+.|.-.|.... |.+ .-+++.+++|++.+ ++|++.-|+
T Consensus 148 ~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~--Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGg 225 (321)
T PRK07084 148 VLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGA--YKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGS 225 (321)
T ss_pred eecCccCCccCcccccCCHHHHHHHHHHhCCCEEeecccccccc--ccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCC
Confidence 2221 1 23578888888999999998733332222 332 35889999999999 799999888
Q ss_pred CCCHHHHHHHHHhcCC
Q psy7343 341 IQCLADVEACLAQTGV 356 (487)
Q Consensus 341 I~s~~da~~~l~~~Ga 356 (487)
=..+++..+.+...|.
T Consensus 226 Sg~~~~~~~~~~~~g~ 241 (321)
T PRK07084 226 SSVPQEYVKTINEYGG 241 (321)
T ss_pred CCCcHHHHHHHHHhcC
Confidence 7777666655555554
|
|
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.97 Score=47.07 Aligned_cols=97 Identities=19% Similarity=0.229 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+++.-.+.++++++.++ +.+.+-.--+|+..+..++++.+++.++.+|- | + ....+++..+++++...
T Consensus 169 ~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~~~iE-------e-P--~~~~d~~~~~~l~~~~~ 238 (368)
T TIGR02534 169 DPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGVELIE-------Q-P--TPAENREALARLTRRFN 238 (368)
T ss_pred CcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcChhheE-------C-C--CCcccHHHHHHHHHhCC
Confidence 34444556667777763 33333222245666788888899988766542 1 1 12236788899999999
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+||.+.-.+.+..|+.++++..++|.+.+
T Consensus 239 ~pia~dE~~~~~~~~~~~~~~~~~d~~~~ 267 (368)
T TIGR02534 239 VPIMADESVTGPADALAIAKASAADVFAL 267 (368)
T ss_pred CCEEeCcccCCHHHHHHHHHhCCCCEEEE
Confidence 99999888999999999997777888764
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.8 Score=44.18 Aligned_cols=149 Identities=21% Similarity=0.316 Sum_probs=82.2
Q ss_pred CchHHHHHHHHhCCccceeccccchhhh-cC---hhHHHHHHh-----cCCCCCCeee-eec-c---CCHHHHHHHHH-h
Q psy7343 160 SELPWRLLSRRYGSHLCYTPMVSAHQFI-AD---KKLRQEILM-----STPEDRPLII-QFC-G---NDSKNLTEAAK-L 224 (487)
Q Consensus 160 td~~fr~i~~~~Ga~l~~t~~v~~~~Ll-~~---~~~~~~~l~-----~~~~~~Pv~V-qi~-g---~d~~~~~~aa~-~ 224 (487)
-|.+...+..+.|++++-+.--.+...+ ++ +--..+++. ......|++| -+- + .++++..+.|. +
T Consensus 43 yD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl 122 (332)
T PLN02424 43 YDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRM 122 (332)
T ss_pred CCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHH
Confidence 4667777788888776432211111001 00 001222221 2234567776 332 3 46777666554 5
Q ss_pred hCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc--------------c---ccc
Q psy7343 225 AEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ--------------D---VNK 286 (487)
Q Consensus 225 ~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~--------------d---~~~ 286 (487)
+++. +++|.|-.|. ....+.++.+. ..+|||..-+.+.+ + ...
T Consensus 123 ~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~ 183 (332)
T PLN02424 123 LKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVK 183 (332)
T ss_pred HHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHHHHHH
Confidence 4666 4444443221 11234455555 34899995443311 1 124
Q ss_pred HHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 287 ~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
..+-++.++++||++|.+-+- .-+..++|.+.++||+|+-|
T Consensus 184 li~dA~ale~AGAf~ivLE~V------------p~~la~~It~~l~IPtIGIG 224 (332)
T PLN02424 184 VVETALALQEAGCFAVVLECV------------PAPVAAAITSALQIPTIGIG 224 (332)
T ss_pred HHHHHHHHHHcCCcEEEEcCC------------cHHHHHHHHHhCCCCEEeec
Confidence 567789999999999988221 23478899999999999754
|
|
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=93.95 E-value=1.3 Score=45.92 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCC
Q psy7343 256 WPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTI 333 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~i 333 (487)
++.-.+.++++++.++ +.+.+-..-+++..+..++++.+++.|+.+|- + + . ...+++..+++++..++
T Consensus 171 ~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~~~iE-------e-P-~-~~~~~~~~~~l~~~~~~ 240 (365)
T cd03318 171 PADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVELIE-------Q-P-V-PRENLDGLARLRSRNRV 240 (365)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCcceee-------C-C-C-CcccHHHHHHHHhhcCC
Confidence 3333455666776663 23333221245666778888899988876542 1 1 1 22367889999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
||.+.=.+.+..|+.++++...+|.+++
T Consensus 241 pia~dE~~~~~~~~~~~i~~~~~d~~~~ 268 (365)
T cd03318 241 PIMADESVSGPADAFELARRGAADVFSL 268 (365)
T ss_pred CEEcCcccCCHHHHHHHHHhCCCCeEEE
Confidence 9999878899999999997666788754
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >KOG4175|consensus | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.6 Score=41.30 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCc------ccccc--CChHHHHHHHHHHhhh-ccCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY------GAYLQ--DDWPLLTNLVSSLRQA-VQVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~------G~~l~--~d~~~i~eiv~~v~~~-~~iPV~vKiR~~~ 282 (487)
.|.++.+.+.+-+++. .|.||+ |.|..-...++. .-+|+ -..+.+.++++.++.. +.+|++.-+-..+
T Consensus 29 P~v~~T~kilkglq~gG~dIIEL--GvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNP 106 (268)
T KOG4175|consen 29 PDVSTTAKILKGLQSGGSDIIEL--GVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNP 106 (268)
T ss_pred CcHHHHHHHHHHHhcCCcCeEEe--cCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccH
Confidence 4566778888888887 788888 555422111110 11122 2345566666666655 5788877542111
Q ss_pred cc-ccHHHHHHHHHHcCCcEEEE-------------------------Ecc-ccC-----------------CCCCCCCC
Q psy7343 283 DV-NKTVEYARMLERAGCQLLAV-------------------------HGR-TVD-----------------QRGMNTGL 318 (487)
Q Consensus 283 d~-~~~~e~a~~le~~G~d~I~V-------------------------hgR-t~~-----------------~~g~~~g~ 318 (487)
=. --.+.+.+.+.++|+.++.| .+- |.. .+-+.+|.
T Consensus 107 Il~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvVSrmG~TG~ 186 (268)
T KOG4175|consen 107 ILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVVSRMGVTGT 186 (268)
T ss_pred HHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEEEecccccc
Confidence 00 01233444555566666554 110 100 00012221
Q ss_pred C------CHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 319 A------SWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 319 ~------~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
. .-+++.++++.. +.|+-..=||.++|++++.=+- +|||.+|..+.
T Consensus 187 ~~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv--aDGVvvGSkiv 239 (268)
T KOG4175|consen 187 RESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV--ADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh--ccceEecHHHH
Confidence 1 126778888888 8899888899999999988633 99999998654
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=93.89 E-value=2 Score=41.27 Aligned_cols=134 Identities=18% Similarity=0.200 Sum_probs=80.9
Q ss_pred CCCCCeeeeec-c---CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE
Q psy7343 201 PEDRPLIIQFC-G---NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC 276 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g---~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v 276 (487)
+.+.-|++|.- + .|.....++++.+.+. |. ..+.. ..++.+ +.+++.+++|+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~--------G~-~~~~~---------~~~~~~----~~i~~~~~iPil~ 65 (219)
T cd04729 8 KGGLIVSCQALPGEPLHSPEIMAAMALAAVQG--------GA-VGIRA---------NGVEDI----RAIRARVDLPIIG 65 (219)
T ss_pred cCCeEEEccCCCCCCcCcHHHHHHHHHHHHHC--------CC-eEEEc---------CCHHHH----HHHHHhCCCCEEE
Confidence 44566777765 2 3566777888877766 33 11111 234433 3455557899975
Q ss_pred Eeecccc-----cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH
Q psy7343 277 KIRIYQD-----VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 277 KiR~~~d-----~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l 351 (487)
-.|.+.+ +....+.++.+.++|+|.|.+...... . -.+....+.++++++..++|++. ++.|.+++....
T Consensus 66 ~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~--p~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~ 140 (219)
T cd04729 66 LIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-R--PDGETLAELIKRIHEEYNCLLMA--DISTLEEALNAA 140 (219)
T ss_pred EEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-C--CCCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHH
Confidence 3322211 112345678889999998877432111 0 01113346777777766688777 788999998877
Q ss_pred HhcCCcEEEec
Q psy7343 352 AQTGVAGVMTA 362 (487)
Q Consensus 352 ~~~Gad~VmiG 362 (487)
+.|+|.+.+.
T Consensus 141 -~~G~d~i~~~ 150 (219)
T cd04729 141 -KLGFDIIGTT 150 (219)
T ss_pred -HcCCCEEEcc
Confidence 6899998763
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.1 Score=45.79 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=58.4
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CCCcEEE--------cC
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LTIPVIA--------NG 339 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~iPVi~--------nG 339 (487)
++||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+. .++.|-+ .+
T Consensus 85 ~VPV~lHL----DHg~~~e~i~~ai~~GftSVMiD~S~------lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed 154 (321)
T PRK07084 85 PIPIVLHL----DHGDSFELCKDCIDSGFSSVMIDGSH------LPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVED 154 (321)
T ss_pred CCcEEEEC----CCCCCHHHHHHHHHcCCCEEEeeCCC------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccC
Confidence 68999987 55555677788888999999995431 1111233444444332 3444421 11
Q ss_pred C-------CCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 340 N-------IQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 340 g-------I~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+ .++++++.++.++||+|...++=|-....+-
T Consensus 155 ~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~ 193 (321)
T PRK07084 155 EVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYK 193 (321)
T ss_pred CccCcccccCCHHHHHHHHHHhCCCEEeecccccccccc
Confidence 1 5689999999999999988877654444433
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.26 Score=53.53 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=53.6
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc-EEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP-VIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP-Vi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+..+.++.|.++|+|.|.| ..+. . ++. ...+.++++++..+.+ .+..|.|.|.++++.++ +.|||++.+|.
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~v-d~a~-g---~~~-~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li-~aGAd~I~vg~ 313 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCI-DSSE-G---YSE-WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLA-EAGADFVKVGI 313 (502)
T ss_pred hhHHHHHHHHHHhCCCeEee-cCcc-c---ccH-HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHH-HcCCCEEEECC
Confidence 35678888899999999999 3211 1 111 1258899999887532 34559999999999999 79999998864
Q ss_pred c
Q psy7343 364 G 364 (487)
Q Consensus 364 a 364 (487)
|
T Consensus 314 g 314 (502)
T PRK07107 314 G 314 (502)
T ss_pred C
Confidence 3
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.53 Score=47.38 Aligned_cols=108 Identities=11% Similarity=0.145 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecc-cccccHHHHHHHHHHcCCcEEEEEcccc-CCCCCCCCCC--C-HHHHHHHH-
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIY-QDVNKTVEYARMLERAGCQLLAVHGRTV-DQRGMNTGLA--S-WEHITAVR- 328 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~-~d~~~~~e~a~~le~~G~d~I~VhgRt~-~~~g~~~g~~--~-~~~i~~i~- 328 (487)
..+...+.++.|.+.+++||++-+--| ++..+....++.++++|+.+|+|-..+. +..|...|.. . -+.+.+|+
T Consensus 57 t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~A 136 (285)
T TIGR02317 57 TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAA 136 (285)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHH
Confidence 566677777788888899999988665 3455667778999999999999954332 1122222321 1 13444443
Q ss_pred --hhC-CCcEEEcCCCCC-----HHHHHHH---HHhcCCcEEEec
Q psy7343 329 --KAL-TIPVIANGNIQC-----LADVEAC---LAQTGVAGVMTA 362 (487)
Q Consensus 329 --~~~-~iPVi~nGgI~s-----~~da~~~---l~~~Gad~VmiG 362 (487)
+.. +.+++.+..... .+++.+- ..+.|||+|.+-
T Consensus 137 a~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~ 181 (285)
T TIGR02317 137 AVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPE 181 (285)
T ss_pred HHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeC
Confidence 332 334444333222 3443221 225799999983
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.32 Score=45.81 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=57.8
Q ss_pred ccccHHHHHHHHHHc---CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 283 DVNKTVEYARMLERA---GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 283 d~~~~~e~a~~le~~---G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+.+++.+..+.+... |+=.+-| ++...+ +| ++++.+..+......||+..|||.-.||.+.+. ..|+++|
T Consensus 135 ~~ed~le~Vk~l~~~~~~~lIvLDi-~aVGt~----~G-~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~-~~Gv~gv 207 (229)
T COG1411 135 WLEDFLETVKDLNYRRDPGLIVLDI-GAVGTK----SG-PDYELLTKVLELSEHPVLLGGGVGGMEDLELLL-GMGVSGV 207 (229)
T ss_pred CchhHHHHHHHHhccCCCCeEEEEc-cccccc----cC-CCHHHHHHHHHhccCceeecCCcCcHHHHHHHh-cCCCcee
Confidence 455666666665543 3333334 332222 22 589999999999999999999999999999888 6999999
Q ss_pred EeccccccC
Q psy7343 360 MTAEGNLYN 368 (487)
Q Consensus 360 miGRa~l~~ 368 (487)
.+||++...
T Consensus 208 LvaTalh~G 216 (229)
T COG1411 208 LVATALHEG 216 (229)
T ss_pred eehhhhhcC
Confidence 999986543
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.16 Score=54.68 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=65.8
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+..+.++.|.+.|+|.|.+..- . . .+ ....+.++++++.. ++|||+ |.+.|.+.++.++ +.|||+|-||=
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a-~-g---~~-~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~-~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTA-H-G---HQ-VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLL-EAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCC-C-C---Cc-HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHH-HhCCCEEEECC
Confidence 36778889999999999998221 1 0 11 12347899999875 899999 8899999999999 79999987554
Q ss_pred c--cccCcccccCCCCCcHHHHHHHHHHHHHc
Q psy7343 364 G--NLYNPALFTGQTRPAWELASEYLDLVAQY 393 (487)
Q Consensus 364 a--~l~~P~lf~~~~~~~~~~~~~~l~~~~~~ 393 (487)
| -.-+-..+.+...+....+.+..+.+.++
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~ 327 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKL 327 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHc
Confidence 3 33333333333333333333333333444
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.4 Score=45.89 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=63.2
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc-EEEcCCCCCHHHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP-VIANGNIQCLADVEAC 350 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP-Vi~nGgI~s~~da~~~ 350 (487)
.+++.=+|.. +.++..+.++.+.+.|+..+-|.- +++...+.++++++....+ +++.|.|.+.+++...
T Consensus 10 ~~~~~v~r~~-~~~~~~~~~~a~~~gGi~~iEvt~---------~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a 79 (206)
T PRK09140 10 LPLIAILRGI-TPDEALAHVGALIEAGFRAIEIPL---------NSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRL 79 (206)
T ss_pred CCEEEEEeCC-CHHHHHHHHHHHHHCCCCEEEEeC---------CCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHH
Confidence 3455555543 667889999999999999999932 2333456888888877654 7899999999999999
Q ss_pred HHhcCCcEEEecc
Q psy7343 351 LAQTGVAGVMTAE 363 (487)
Q Consensus 351 l~~~Gad~VmiGR 363 (487)
+ +.|+|+++.+-
T Consensus 80 ~-~aGA~fivsp~ 91 (206)
T PRK09140 80 A-DAGGRLIVTPN 91 (206)
T ss_pred H-HcCCCEEECCC
Confidence 9 79999999863
|
|
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.44 Score=49.13 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhhccCcEEEEeec---cc-----------ccccHHHHHHHHHH--cCCcEEEEEccccCCC---C-----
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRI---YQ-----------DVNKTVEYARMLER--AGCQLLAVHGRTVDQR---G----- 313 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~---~~-----------d~~~~~e~a~~le~--~G~d~I~VhgRt~~~~---g----- 313 (487)
.+.++.++.+ ..++|+++-+-. +. +.+.....++.+.+ .|+|.+-+ .-+.... |
T Consensus 144 ~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKv-e~p~~~~~veg~~~~~ 221 (340)
T PRK12858 144 FVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKV-EVPVDMKFVEGFDGFE 221 (340)
T ss_pred HHHHHHHHHH-HcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEe-eCCCCccccccccccc
Confidence 3455555443 348998885211 11 11245667777774 99999987 2111100 0
Q ss_pred -CCCCCCCHHHHHHHHhhCCCcEEE-cCCCCCHHHHHHHHH---hcCC--cEEEeccccccCc
Q psy7343 314 -MNTGLASWEHITAVRKALTIPVIA-NGNIQCLADVEACLA---QTGV--AGVMTAEGNLYNP 369 (487)
Q Consensus 314 -~~~g~~~~~~i~~i~~~~~iPVi~-nGgI~s~~da~~~l~---~~Ga--d~VmiGRa~l~~P 369 (487)
-|+...-.+.++++.+..++|++. +||+ +.+++.+.++ +.|+ .||.+||....++
T Consensus 222 ~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 222 EAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDG 283 (340)
T ss_pred ccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhh
Confidence 011111125677888888999876 7777 6677766653 3789 9999999887775
|
|
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.94 Score=46.69 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=89.0
Q ss_pred CCCeeeeec-cCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEe
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKi 278 (487)
..|+..... ..+++++.+.++ ..++.|..+-+..|.. . ..+ ..+.+.-.+.++++++.++ +.+.+-.
T Consensus 108 ~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~-~--~~~------~~~~~~d~~~v~avr~~~g~~~~l~vDa 178 (341)
T cd03327 108 KIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYG-P--SDG------HAGLRKNVELVRAIREAVGYDVDLMLDC 178 (341)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-C--Ccc------hHHHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 345544432 346777755444 4555577766655430 0 000 0234555667777887763 4444433
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
--.|+..+...+++.++++++.++- | + . ...+++..+++++.+++||.+.=.+.+..++.++++...+|.
T Consensus 179 n~~~~~~~A~~~~~~l~~~~~~~iE-------e-P-~-~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~ 248 (341)
T cd03327 179 YMSWNLNYAIKMARALEKYELRWIE-------E-P-L-IPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDI 248 (341)
T ss_pred CCCCCHHHHHHHHHHhhhcCCcccc-------C-C-C-CccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCE
Confidence 2246667788888888888776552 1 1 1 234688899999999999999778899999999997667787
Q ss_pred EEe
Q psy7343 359 VMT 361 (487)
Q Consensus 359 Vmi 361 (487)
+++
T Consensus 249 i~~ 251 (341)
T cd03327 249 LQP 251 (341)
T ss_pred Eec
Confidence 764
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.71 Score=47.97 Aligned_cols=42 Identities=19% Similarity=0.491 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 319 ~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
..|+.++++++..+.|||.- ||.+.+|++++. +.|+|+|.++
T Consensus 223 ~~w~~i~~ir~~~~~pviiK-gV~~~eda~~a~-~~G~d~I~VS 264 (361)
T cd04736 223 FNWQDLRWLRDLWPHKLLVK-GIVTAEDAKRCI-ELGADGVILS 264 (361)
T ss_pred CCHHHHHHHHHhCCCCEEEe-cCCCHHHHHHHH-HCCcCEEEEC
Confidence 47899999999999999996 599999999999 7899999875
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.6 Score=41.69 Aligned_cols=139 Identities=19% Similarity=0.336 Sum_probs=82.7
Q ss_pred CCCCeeeeec---c---CCHHHHHHHHH---hhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc
Q psy7343 202 EDRPLIIQFC---G---NDSKNLTEAAK---LAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271 (487)
Q Consensus 202 ~~~Pv~Vqi~---g---~d~~~~~~aa~---~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~ 271 (487)
.+.|+-|=|| | .+.+++..+.+ .+.+. .|++-+ || .+..+ .-|.+.+.+++++.+ +
T Consensus 49 ~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf--G~---L~~dg------~iD~~~~~~Li~~a~---~ 114 (201)
T PF03932_consen 49 VDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVF--GA---LTEDG------EIDEEALEELIEAAG---G 114 (201)
T ss_dssp TTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE-------BETTS------SB-HHHHHHHHHHHT---T
T ss_pred cCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEE--Ee---ECCCC------CcCHHHHHHHHHhcC---C
Confidence 4578888777 2 35555554433 34444 565544 44 11222 147888888887654 7
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEA 349 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~ 349 (487)
.|++.. |..+...+..+..+.+.+.|++.|.-||..... ....+.++++.+.. ++.|+..|||+. +.+.+
T Consensus 115 ~~~tFH-RAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~a------~~g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~ 186 (201)
T PF03932_consen 115 MPVTFH-RAFDEVPDPEEALEQLIELGFDRVLTSGGAPTA------LEGIENLKELVEQAKGRIEIMPGGGVRA-ENVPE 186 (201)
T ss_dssp SEEEE--GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSST------TTCHHHHHHHHHHHTTSSEEEEESS--T-TTHHH
T ss_pred CeEEEe-CcHHHhCCHHHHHHHHHhcCCCEEECCCCCCCH------HHHHHHHHHHHHHcCCCcEEEecCCCCH-HHHHH
Confidence 788884 555556678888899999999999886653211 12356666665543 688999999974 67888
Q ss_pred HHHhcCCcEEEec
Q psy7343 350 CLAQTGVAGVMTA 362 (487)
Q Consensus 350 ~l~~~Gad~VmiG 362 (487)
+++++|+..+-.+
T Consensus 187 l~~~tg~~~~H~s 199 (201)
T PF03932_consen 187 LVEETGVREIHGS 199 (201)
T ss_dssp HHHHHT-SEEEET
T ss_pred HHHhhCCeEEeec
Confidence 8877999877654
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=93.54 E-value=1.3 Score=43.74 Aligned_cols=132 Identities=12% Similarity=0.156 Sum_probs=79.5
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeec
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRI 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~ 280 (487)
..|+..-+...+++...++.+..+..+..+-+..|- .+++.-.+.++++++.++ +.+.+-.--
T Consensus 72 ~v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 136 (263)
T cd03320 72 RIPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVGA---------------TSFEEDLARLRALREALPADAKLRLDANG 136 (263)
T ss_pred CcceeEEecCCCHHHHHHHHHHHhCCCCEEEEEECC---------------CChHHHHHHHHHHHHHcCCCCeEEEeCCC
Confidence 345555555555544444444444445554443221 234444556666777653 333332212
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+|+..+...+++.+++.++.+|- | + .. ..+++..++++ .++||.+.=.+.+..|+.++++...+|.++
T Consensus 137 ~w~~~~A~~~~~~l~~~~i~~iE-------q-P-~~-~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~ 204 (263)
T cd03320 137 GWSLEEALAFLEALAAGRIEYIE-------Q-P-LP-PDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGALGALV 204 (263)
T ss_pred CCCHHHHHHHHHhhcccCCceEE-------C-C-CC-hHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCCCEEE
Confidence 45666778888888887777653 1 1 11 23566676766 789999988899999999999666678776
Q ss_pred e
Q psy7343 361 T 361 (487)
Q Consensus 361 i 361 (487)
+
T Consensus 205 ~ 205 (263)
T cd03320 205 L 205 (263)
T ss_pred E
Confidence 4
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.58 Score=44.36 Aligned_cols=177 Identities=18% Similarity=0.267 Sum_probs=90.9
Q ss_pred CCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCc-CcEEEee
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPH-CDGIDIN 235 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~-~d~IdiN 235 (487)
|+++..=...+.++|++.+.--+...+.=.-+++...++....+ |-.|=++ ..++++..+. ++++ .|.|+||
T Consensus 5 Gi~~~~da~~~~~~g~d~~Gfi~~~~S~R~v~~~~a~~l~~~~~---~~~VgVf~~~~~~~I~~~---~~~~~ld~vQLH 78 (197)
T PF00697_consen 5 GITRPEDARLAAELGADYLGFIFYPKSPRYVSPDQARELVSAVP---PKIVGVFVNQSPEEILEI---VEELGLDVVQLH 78 (197)
T ss_dssp ---SHHHHHHHHHHTSSEEEEE--TTCTTB--HHHHHHHHCCSS---SSEEEEESSS-HHHHHHH---HHHCTESEEEE-
T ss_pred CCCcHHHHHHHHHcCCCEEeeecCCCCCCccCHHHHHHHHHhcC---CCEEEEEcCCCHHHHHHH---HHHcCCCEEEEC
Confidence 44444333456677875532211111111223445556654333 2144444 3344544444 4444 4555554
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcC-CcEEEEEccccCCCCC
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG-CQLLAVHGRTVDQRGM 314 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G-~d~I~VhgRt~~~~g~ 314 (487)
|. ...+. .+.++. ++|++-.+++..+.. ..+.+..+. +|++.+.++ .|+
T Consensus 79 ----------G~------e~~e~----~~~l~~--~~~vi~~~~v~~~~~----~~~~~~~~~~~d~~LlD~~----~Gg 128 (197)
T PF00697_consen 79 ----------GD------ESPEY----IKLLRA--GLPVIKAIHVDKDID----LLDYLERYESVDYFLLDSG----SGG 128 (197)
T ss_dssp ----------SG------G-HHH----HHHHHT--TSEEEEEEEESSCHS----CCHHCHCSTT-SEEEEESS----STS
T ss_pred ----------CC------CCHHH----HHHhhc--CceEEEEEEeCCccc----hHHHHHhcccccEEeEccC----CCc
Confidence 42 12222 223332 578888776664443 222233333 499999732 222
Q ss_pred CCCCCCHHHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 315 NTGLASWEHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 315 ~~g~~~~~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
..-..+|+.++.+.+. .+.|++.+|||+ ++.+.++++..+..||-+..|.=.+|-.
T Consensus 129 tG~~~dw~~~~~~~~~~~~~p~iLAGGl~-p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 129 TGKTFDWSLLKKIVESYSPKPVILAGGLN-PENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp SSS---GGGGCCCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred CCcccCHHHhhhhhhhcccCcEEEEcCCC-hHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 2234689988888764 389999999995 6788888877899999999998888766
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.2 Score=44.06 Aligned_cols=91 Identities=25% Similarity=0.308 Sum_probs=63.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|+++|.|.. ... ++.| .++.+..+++.+++||...-=|-++-++.+.. ..|||+|.+=-+
T Consensus 68 ~d~~~~a~~y~~~GA~aiSVlT--e~~--~F~G--s~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~-~~GADaVLLI~~ 140 (254)
T PF00218_consen 68 FDPAEIAKAYEEAGAAAISVLT--EPK--FFGG--SLEDLRAVRKAVDLPVLRKDFIIDPYQIYEAR-AAGADAVLLIAA 140 (254)
T ss_dssp -SHHHHHHHHHHTT-SEEEEE----SC--CCHH--HHHHHHHHHHHSSS-EEEES---SHHHHHHHH-HTT-SEEEEEGG
T ss_pred CCHHHHHHHHHhcCCCEEEEEC--CCC--CCCC--CHHHHHHHHHHhCCCcccccCCCCHHHHHHHH-HcCCCEeehhHH
Confidence 4889999999999999999932 111 2333 57889999999999999999999999999988 799999987666
Q ss_pred cccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 365 NLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 365 ~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
++.+ +.+.++++++..++
T Consensus 141 ~L~~------------~~l~~l~~~a~~lG 158 (254)
T PF00218_consen 141 ILSD------------DQLEELLELAHSLG 158 (254)
T ss_dssp GSGH------------HHHHHHHHHHHHTT
T ss_pred hCCH------------HHHHHHHHHHHHcC
Confidence 6554 23345555555554
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.92 Score=45.77 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcE
Q psy7343 259 LTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPV 335 (487)
Q Consensus 259 i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPV 335 (487)
+.+.++.+++.. ..+|.+-. ++..++ ..+.++|+|.|++. . + ..+.++++.+.. ++.+
T Consensus 195 i~~av~~~r~~~~~~kIeVEv------~sleea-~ea~~~gaDiI~LD-n-------~----s~e~~~~av~~~~~~~~i 255 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEVEV------ENLDEL-DQALKAGADIIMLD-N-------F----TTEQMREAVKRTNGRALL 255 (296)
T ss_pred HHHHHHHHHHhCCCCCEEEEe------CCHHHH-HHHHHcCCCEEEeC-C-------C----ChHHHHHHHHhhcCCeEE
Confidence 344455555443 34555544 344444 44556899999992 1 1 123344433322 6788
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.++|||+ .+.+.++- .+|+|.+.+|.-...-|++
T Consensus 256 eaSGGI~-~~ni~~yA-~tGVD~Is~galthsa~~l 289 (296)
T PRK09016 256 EVSGNVT-LETLREFA-ETGVDFISVGALTKHVQAL 289 (296)
T ss_pred EEECCCC-HHHHHHHH-hcCCCEEEeCccccCCCcc
Confidence 9999995 78888887 7999999999754444544
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=93.38 E-value=2.5 Score=43.59 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=79.3
Q ss_pred CCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ecc
Q psy7343 204 RPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RIY 281 (487)
Q Consensus 204 ~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~~ 281 (487)
.||.+.+. +.+.+...++ +...|+-|=+..+. .. +......+..|.+...++++..+ ..++.|-+-+ +++
T Consensus 74 VPValHLDHg~~~e~i~~A---i~~GFtSVMiDgS~-l~---~~~~~~p~eENI~~Tkevve~Ah-~~GvsVEaELG~ig 145 (347)
T TIGR01521 74 IPVVMHQDHGNSPATCQRA---IQLGFTSVMMDGSL-RE---DAKTPADYDYNVRVTAEVVAFAH-AVGASVEGELGCLG 145 (347)
T ss_pred CcEEEECCCCCCHHHHHHH---HHcCCCEEeecCcC-Cc---ccCCCCCHHHHHHHHHHHHHHHH-HcCCeEEEEeeecc
Confidence 69999987 5565543333 33333322222111 00 00001123445666777766544 3466655532 121
Q ss_pred c---------c-------------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC---C----CCHHHHHHHHhhC-
Q psy7343 282 Q---------D-------------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG---L----ASWEHITAVRKAL- 331 (487)
Q Consensus 282 ~---------d-------------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g---~----~~~~~i~~i~~~~- 331 (487)
. | ..+..++.+..+++|+|.+.|.=.|.-.. |.+ + -+++.+++|++.+
T Consensus 146 g~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~--Yk~~~~p~~~~Ld~~rL~eI~~~v~ 223 (347)
T TIGR01521 146 SLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGA--YKFTRKPTGEVLAIQRIEEIHARLP 223 (347)
T ss_pred cccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCC--cCCCCCCChhhcCHHHHHHHHccCC
Confidence 0 0 12567888888999999998732332222 433 1 5789999999999
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
++|++.-|+=..+++..+.+.++|
T Consensus 224 ~vPLVLHGgSG~p~~~~~~~~~~~ 247 (347)
T TIGR01521 224 DTHLVMHGSSSVPQEWLDIINEYG 247 (347)
T ss_pred CCCEEEeCCCCCchHhhHHHHhhc
Confidence 799998888777654444444444
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.2 Score=46.20 Aligned_cols=92 Identities=10% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE
Q psy7343 260 TNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337 (487)
Q Consensus 260 ~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~ 337 (487)
.+.++++++.++ +.+.+-..-.|+.++...+++.+++.++..+- | + . ...+++..+++++..++||.+
T Consensus 150 ~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------e-P-~-~~~d~~~~~~L~~~~~~pia~ 219 (361)
T cd03322 150 PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLFWME-------D-P-T-PAENQEAFRLIRQHTATPLAV 219 (361)
T ss_pred HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCCEEE-------C-C-C-CcccHHHHHHHHhcCCCCEEe
Confidence 455677777763 44544333346677788888889888877663 1 1 1 234688899999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.=.+.+..++.++++...+|.+++
T Consensus 220 gE~~~~~~~~~~~i~~~a~di~~~ 243 (361)
T cd03322 220 GEVFNSIWDWQNLIQERLIDYIRT 243 (361)
T ss_pred ccCCcCHHHHHHHHHhCCCCEEec
Confidence 778899999999996666777754
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=1 Score=45.43 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=56.9
Q ss_pred HHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEE
Q psy7343 260 TNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVI 336 (487)
Q Consensus 260 ~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi 336 (487)
.+.++.+++... .+|.+- .++..++ +.+.++|+|.||+.. + ..+.+++..+.+ ++.+.
T Consensus 193 ~~av~~~r~~~~~~kIeVE------vetleea-~eA~~aGaDiImLDn--------m----spe~l~~av~~~~~~~~lE 253 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIE------VETLAQL-ETALAHGAQSVLLDN--------F----TLDMMREAVRVTAGRAVLE 253 (294)
T ss_pred HHHHHHHHHhCCCCcEEEE------cCCHHHH-HHHHHcCCCEEEECC--------C----CHHHHHHHHHhhcCCeEEE
Confidence 445555554322 334443 3344444 445579999999921 1 223344433332 56788
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++|||+ .+.+.++. .+|+|.+.+|.--..-|++
T Consensus 254 aSGGIt-~~ni~~yA-~tGVD~IS~galthsa~~l 286 (294)
T PRK06978 254 VSGGVN-FDTVRAFA-ETGVDRISIGALTKDVRAT 286 (294)
T ss_pred EECCCC-HHHHHHHH-hcCCCEEEeCccccCCccc
Confidence 999995 78888887 7999999999765555655
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.53 Score=45.30 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=61.3
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCC---cEEEcCCCCCHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTI---PVIANGNIQCLADVE 348 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~i---PVi~nGgI~s~~da~ 348 (487)
.+++.=+|.. +.++...+++.+.+.|+..+-|.-|+ +.-.+.++++++..+- -+++.|-|.|.++++
T Consensus 13 ~~vi~vir~~-~~~~a~~~~~al~~~Gi~~iEit~~~---------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~ 82 (213)
T PRK06552 13 NGVVAVVRGE-SKEEALKISLAVIKGGIKAIEVTYTN---------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTAR 82 (213)
T ss_pred CCEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEECCC---------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHH
Confidence 3455545443 77789999999999999999995442 3345889999887632 378999999999999
Q ss_pred HHHHhcCCcEEE
Q psy7343 349 ACLAQTGVAGVM 360 (487)
Q Consensus 349 ~~l~~~Gad~Vm 360 (487)
+.+ +.|++.++
T Consensus 83 ~a~-~aGA~Fiv 93 (213)
T PRK06552 83 LAI-LAGAQFIV 93 (213)
T ss_pred HHH-HcCCCEEE
Confidence 999 79999988
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=13 Score=40.00 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=46.8
Q ss_pred HcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 296 RAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 296 ~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
..++|++.+.. ..|+..-..||..+... ...|++.+||++ ++.+.+++ ..+..||-+.+|.=..|.
T Consensus 372 ~~~~d~~LlDs----~~GGtG~~~DW~~l~~~---~~~p~iLAGGL~-peNV~~ai-~~~P~gVDVsSGVE~~pG 437 (454)
T PRK09427 372 LQHVDRYLLDN----GQGGTGQTFDWSLLPGQ---SLDNVLLAGGLN-PDNCQQAA-QLGCAGLDFNSGVESAPG 437 (454)
T ss_pred hcCCCEEEEcC----CCCCCCCccChHHhhhc---ccCCEEEECCCC-HHHHHHHH-hcCCCEEEeCCcccCCCC
Confidence 34689999964 11222234578776532 267999999995 77777777 578999999999876664
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.5 Score=47.31 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh-hCCCc
Q psy7343 257 PLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK-ALTIP 334 (487)
Q Consensus 257 ~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~-~~~iP 334 (487)
+.+.+.++.+|+.. ..+|.+-. ++.++ ++.+.++|+|.|++|.-+.+ ...+.++.+++ ..++.
T Consensus 173 ~~i~~av~~~r~~~~~~kIeVEv------~tlee-a~ea~~~GaDiI~lDn~~~e--------~l~~~v~~l~~~~~~~~ 237 (277)
T TIGR01334 173 FDWGGAIGRLKQTAPERKITVEA------DTIEQ-ALTVLQASPDILQLDKFTPQ--------QLHHLHERLKFFDHIPT 237 (277)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEC------CCHHH-HHHHHHcCcCEEEECCCCHH--------HHHHHHHHHhccCCCEE
Confidence 35667777777654 34455543 34444 44455799999999632211 11234444432 23677
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+.++|||+ .+.+.++. .+|+|.+.+|--..+.|-
T Consensus 238 leasGGI~-~~ni~~ya-~~GvD~is~gal~~a~~~ 271 (277)
T TIGR01334 238 LAAAGGIN-PENIADYI-EAGIDLFITSAPYYAAPC 271 (277)
T ss_pred EEEECCCC-HHHHHHHH-hcCCCEEEeCcceecCcc
Confidence 89999995 78888887 799999999975445443
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.1 Score=46.75 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=83.5
Q ss_pred CHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~ 290 (487)
.++...++++.+.+ .++.+-+..|++. .+.-.+.++++|++++ +.+.+-.--+|+..+...+
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~---------------~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~ 207 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGD---------------GDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRL 207 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCc---------------hHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHH
Confidence 46667777776664 4777777766632 1133455666777764 3444432224556667888
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.+++.++.++- | -..+-+.+..+++++.+.+||.+.=.+.|..|+.++++...+|.|++
T Consensus 208 ~~~l~~~~l~~iE-------e---P~~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~ 268 (372)
T COG4948 208 ARALEEYGLEWIE-------E---PLPPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQP 268 (372)
T ss_pred HHHhcccCcceEE-------C---CCCccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCCCeecC
Confidence 8999988866552 1 11234678899999988899999999999999999996555777753
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.15 E-value=4.3 Score=38.68 Aligned_cols=128 Identities=19% Similarity=0.180 Sum_probs=76.9
Q ss_pred CCCeeeeec-c---CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe
Q psy7343 203 DRPLIIQFC-G---NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~-g---~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi 278 (487)
..-|++|=- + .+++-+..+|+.+++. |. ..+... -+.+ ++++++.+++||+.=+
T Consensus 16 glIVSCQal~~~pl~~~~iv~~mA~Aa~~g--------GA-vgiR~~------------gv~d-Ikai~~~v~vPIIGIi 73 (229)
T COG3010 16 GLIVSCQALPGEPLDSPEIVAAMALAAEQG--------GA-VGIRIE------------GVED-IKAIRAVVDVPIIGII 73 (229)
T ss_pred CeEEEeecCCCCCCcchhHHHHHHHHHHhC--------Cc-ceEeec------------chhh-HHHHHhhCCCCeEEEE
Confidence 445667733 2 3455666777777776 33 121111 1222 3447788899998855
Q ss_pred eccc-c----cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 279 RIYQ-D----VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 279 R~~~-d----~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
.-.. + +.-+.+-.+.|.++|++-|.+.+ |..++ ..| ..-+.+++ .+..+.-.+ -|+.|.++...+. +
T Consensus 74 Krd~~~s~v~ITptlkeVd~L~~~Ga~IIA~Da-T~R~R--P~~-~~~~~i~~-~k~~~~l~M--AD~St~ee~l~a~-~ 145 (229)
T COG3010 74 KRDYPDSPVRITPTLKEVDALAEAGADIIAFDA-TDRPR--PDG-DLEELIAR-IKYPGQLAM--ADCSTFEEGLNAH-K 145 (229)
T ss_pred ecCCCCCCceecccHHHHHHHHHCCCcEEEeec-ccCCC--Ccc-hHHHHHHH-hhcCCcEEE--eccCCHHHHHHHH-H
Confidence 4421 2 23457777889999999999944 33333 333 22244444 233344344 4999999999998 7
Q ss_pred cCCcEEE
Q psy7343 354 TGVAGVM 360 (487)
Q Consensus 354 ~Gad~Vm 360 (487)
.|+|.|.
T Consensus 146 ~G~D~IG 152 (229)
T COG3010 146 LGFDIIG 152 (229)
T ss_pred cCCcEEe
Confidence 8999764
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.27 Score=53.22 Aligned_cols=69 Identities=22% Similarity=0.376 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..+.++.+.++|+|.|.+..- + +.. ..-++.++++++.. ++||++ |+|.|.+++..+. +.|||+|-+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a---~-g~~--~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~-~aGad~i~vg 297 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTA---H-GHS--EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALI-EAGADAVKVG 297 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECC---C-Ccc--hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHH-HcCCCEEEEC
Confidence 4578889999999998877211 0 001 12357889999887 899998 9999999999999 7899999875
|
|
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=93.12 E-value=3.2 Score=41.23 Aligned_cols=42 Identities=43% Similarity=0.536 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
...+-++.++++||++|.+- +.+ -+..++|.+.+++|+|+-|
T Consensus 161 ~~i~~A~a~e~AGA~~ivlE-----------~vp-~~~a~~It~~l~iP~iGIG 202 (263)
T TIGR00222 161 KLLEDALALEEAGAQLLVLE-----------CVP-VELAAKITEALAIPVIGIG 202 (263)
T ss_pred HHHHHHHHHHHcCCCEEEEc-----------CCc-HHHHHHHHHhCCCCEEeec
Confidence 56677889999999999882 222 4788999999999998765
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.5 Score=43.66 Aligned_cols=142 Identities=13% Similarity=0.153 Sum_probs=80.7
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee-c
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-I 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-~ 280 (487)
..||.+.+. +.+.+...+ .++..|+-|=+..+. .. .+.....+..|.+...++++..+ ..++.|-+-+- +
T Consensus 75 ~VPVaLHLDHg~~~e~i~~---Ai~~GFtSVMiDgS~-l~---~~~~~~~~eeNI~~Trevve~Ah-~~GvsVEaELG~i 146 (347)
T PRK13399 75 DIPICLHQDHGNSPATCQS---AIRSGFTSVMMDGSL-LA---DGKTPASYDYNVDVTRRVTEMAH-AVGVSVEGELGCL 146 (347)
T ss_pred CCcEEEECCCCCCHHHHHH---HHhcCCCEEEEeCCC-CC---CCCCccCHHHHHHHHHHHHHHHH-HcCCeEEEEeeec
Confidence 368999987 555554332 233334433333221 00 01112224456677777777543 44776665431 2
Q ss_pred c----------cc------------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC---C----CCHHHHHHHHhhC
Q psy7343 281 Y----------QD------------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG---L----ASWEHITAVRKAL 331 (487)
Q Consensus 281 ~----------~d------------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g---~----~~~~~i~~i~~~~ 331 (487)
+ .+ ..+..+..+..+++|+|.+.|.=.|.-.. |.+ + -+++.+++|++.+
T Consensus 147 gg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~--Yk~~~~p~~~~L~~drl~eI~~~v 224 (347)
T PRK13399 147 GSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGA--YKFTRKPDGDILAIDRIEEIHARL 224 (347)
T ss_pred cCcccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCC--cCCCCCCChhhccHHHHHHHHhhc
Confidence 1 11 12578888888999999997722222211 333 1 5789999999999
Q ss_pred -CCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 332 -TIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 332 -~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
++|++.-|+=..+++..+.+..+
T Consensus 225 ~~vPLVLHGgSGvp~~~~~~~~~~ 248 (347)
T PRK13399 225 PNTHLVMHGSSSVPQELQEIINAY 248 (347)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHHh
Confidence 79999888776664444333333
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.61 Score=43.89 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=60.5
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
|++.=+|.. +.++..+.++.+.+.|++.|.+.-+ +....+.++.+++...-..++.|.|.+.+++..++
T Consensus 5 ~~~~i~r~~-~~~~~~~~~~~l~~~G~~~vev~~~---------~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~- 73 (190)
T cd00452 5 PLVAVLRGD-DAEDALALAEALIEGGIRAIEITLR---------TPGALEAIRALRKEFPEALIGAGTVLTPEQADAAI- 73 (190)
T ss_pred cEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEeCC---------ChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHH-
Confidence 444444433 6667888999999999999999422 22345788888888764567889999999999999
Q ss_pred hcCCcEEEec
Q psy7343 353 QTGVAGVMTA 362 (487)
Q Consensus 353 ~~Gad~VmiG 362 (487)
..|+|+++.+
T Consensus 74 ~~Ga~~i~~p 83 (190)
T cd00452 74 AAGAQFIVSP 83 (190)
T ss_pred HcCCCEEEcC
Confidence 7999999876
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.91 Score=46.64 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHH-HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC
Q psy7343 255 DWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARML-ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~l-e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~ 331 (487)
+++.-.+.++++++.++ +.+.+-.--+|+.++..++++.+ ++.++.+|- | + . .+++...++++.+
T Consensus 116 ~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l~~iE-------q-P-~---~~~~~la~Lr~~~ 183 (327)
T PRK02901 116 TLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPLEYVE-------Q-P-C---ATVEELAELRRRV 183 (327)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCceEEe-------c-C-C---CCHHHHHHHHHhC
Confidence 34444556667777763 23333222246777888888888 667666653 1 1 1 2367788899999
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++||.+.=.+++..|..++++..++|.+++=
T Consensus 184 ~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik 214 (327)
T PRK02901 184 GVPIAADESIRRAEDPLRVARAGAADVAVLK 214 (327)
T ss_pred CCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 9999998889999999999977788888753
|
|
| >TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1 | Back alignment and domain information |
|---|
Probab=92.97 E-value=1 Score=43.25 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccc-ccHHHHH
Q psy7343 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV-NKTVEYA 291 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~-~~~~e~a 291 (487)
.+.++..+.++.+.+..+.|+++... . . .+| + ++++.+++. +.++++-..++ |+ .+....+
T Consensus 8 ~~~~~a~~~~~~~~~~v~~iKig~~l--~-~---~~G------~----~~v~~l~~~-~~~v~lD~K~~-Dig~t~~~~~ 69 (213)
T TIGR01740 8 TTKDEALDLADSLGPEIEVIKVGIDL--L-L---DGG------D----KIIDELAKL-NKLIFLDLKFA-DIPNTVKLQY 69 (213)
T ss_pred CCHHHHHHHHHhcCCcCcEEEECHHH--H-H---hcC------H----HHHHHHHHc-CCCEEEEEeec-chHHHHHHHH
Confidence 35555566666665555666665433 1 1 122 2 455556654 34676655444 44 3455666
Q ss_pred HHHHHcCCcEEEEEcc
Q psy7343 292 RMLERAGCQLLAVHGR 307 (487)
Q Consensus 292 ~~le~~G~d~I~VhgR 307 (487)
+.+.+.|+|.++||+-
T Consensus 70 ~~~~~~gad~vTvh~~ 85 (213)
T TIGR01740 70 ESKIKQGADMVNVHGV 85 (213)
T ss_pred HHHHhcCCCEEEEcCC
Confidence 7788899999999984
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.43 Score=48.08 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~ 332 (487)
.+.+..+++.+.+..++||.+.. |-....+.++...+.|.+.||+.|-. +.-.-+....+++.+ ..+
T Consensus 58 ~~~~~~~~~~~a~~~~vPValHL----DH~~~~e~i~~ai~~GftSVM~DgS~------l~~eeNi~~T~~vv~~ah~~g 127 (287)
T PF01116_consen 58 LEYLAAMVKAAAEEASVPVALHL----DHGKDFEDIKRAIDAGFTSVMIDGSA------LPFEENIAITREVVEYAHAYG 127 (287)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEEE----EEE-SHHHHHHHHHHTSSEEEEE-TT------S-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEeec----ccCCCHHHHHHHHHhCcccccccCCc------CCHHHHHHHHHHHHHhhhhhC
Confidence 56677777888888899999998 54445677777778899999995431 111113333444333 235
Q ss_pred CcEEE----cC--------------CCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 333 IPVIA----NG--------------NIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 333 iPVi~----nG--------------gI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+.|-+ .| -.++++++.++.+++|+|.+.++=|-...
T Consensus 128 v~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG 181 (287)
T PF01116_consen 128 VSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHG 181 (287)
T ss_dssp -EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSS
T ss_pred CEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcccc
Confidence 55443 12 13588999999999999998877554333
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.86 Score=46.04 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEcccc-CCCCCCCCCC--C-HHHHHHHH-
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRTV-DQRGMNTGLA--S-WEHITAVR- 328 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt~-~~~g~~~g~~--~-~~~i~~i~- 328 (487)
.++...+.++.|.+.+++||++-+--|. +..+....++.++++|+.+|.|-..+. +..|.+.|.. . -+.+.+|+
T Consensus 61 ~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~A 140 (294)
T TIGR02319 61 SVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEA 140 (294)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHH
Confidence 4666777777888888999999886653 334566778999999999999944322 1222223322 1 14444443
Q ss_pred --hhC-CCcEEEcCC--CC---CHHHHHHH---HHhcCCcEEEec
Q psy7343 329 --KAL-TIPVIANGN--IQ---CLADVEAC---LAQTGVAGVMTA 362 (487)
Q Consensus 329 --~~~-~iPVi~nGg--I~---s~~da~~~---l~~~Gad~VmiG 362 (487)
+.. +.+++.|.. .. ..+++.+- ..+.|||+|.+-
T Consensus 141 a~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~ 185 (294)
T TIGR02319 141 AVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLE 185 (294)
T ss_pred HHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEec
Confidence 322 223333322 21 23333221 225899999984
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.6 Score=46.20 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcE
Q psy7343 258 LLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPV 335 (487)
Q Consensus 258 ~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPV 335 (487)
...+.++++++.++ +.+.+-.--+|+.++..++++.++++++..+-= + . ...+++..+++++.+.+||
T Consensus 191 ~~~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iEe--------P-~-~~~d~~~~~~L~~~~~iPI 260 (404)
T PRK15072 191 FVPKLFEAVRNKFGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLED--------P-T-PAENQEAFRLIRQHTTTPL 260 (404)
T ss_pred HHHHHHHHHHhhhCCCceEEEECCCCCCHHHHHHHHHhccccCCcEEEC--------C-C-CccCHHHHHHHHhcCCCCE
Confidence 33567888888773 344443323466667788888888887766631 1 1 2346788999999999999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.+.=.+.+..++.++++...+|.+++
T Consensus 261 a~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 261 AVGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred EeCcCccCHHHHHHHHHcCCCCEEec
Confidence 99888899999999997666788865
|
|
| >cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.6 Score=45.94 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=88.0
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEE--eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcE
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV 274 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~Id--iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV 274 (487)
.++|++..+. |-+++++++++..+... .|.|- =|++.|. =+-+.++-..+.+.++...+.++-..
T Consensus 122 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~--------~~p~~eRv~a~~~a~~~a~~eTG~~~ 193 (391)
T cd08209 122 HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNP--------LAPALERIRACRPVLQEVYEQTGRRT 193 (391)
T ss_pred CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC--------CCCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 4689887754 67899999988766555 33321 1111110 01122344555566666566666554
Q ss_pred EEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh--hCCCcEEE----cC--------C
Q psy7343 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK--ALTIPVIA----NG--------N 340 (487)
Q Consensus 275 ~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~--~~~iPVi~----nG--------g 340 (487)
..-..+..+.++..+-++.+.+.|++++||..- . .-|+.+..+++ ..++||.+ .| |
T Consensus 194 ~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~-------~---~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~~~~~G 263 (391)
T cd08209 194 LYAVNLTGPVFTLKEKARRLVEAGANALLFNVF-------A---YGLDVLEALASDPEINVPIFAHPAFAGALYGSPDYG 263 (391)
T ss_pred eEEEEcCCCHHHHHHHHHHHHHhCCCEEEEecc-------c---cchHHHHHHHhcCcCCcEEEecCCcccccccCCCCC
Confidence 433323445677888888899999999999321 1 22556777776 55778873 23 4
Q ss_pred CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 341 IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 341 I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
|...--..++....|+|.+.++..
T Consensus 264 is~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 264 IAASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred CcHHHHHHHHHHHcCCCccccCCc
Confidence 433345567776789999998863
|
Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.77 Score=44.49 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=62.3
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC----CCcEEEcCCCCCHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL----TIPVIANGNIQCLADVE 348 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~----~iPVi~nGgI~s~~da~ 348 (487)
+|+.=+|. .+.++..++++.+.+.|+..|-|.-|+ +...+.++++++.. .--+++.|-|.|.++++
T Consensus 16 ~vi~Vvr~-~~~~~a~~~~~al~~gGi~~iEiT~~t---------p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~ 85 (222)
T PRK07114 16 GMVPVFYH-ADVEVAKKVIKACYDGGARVFEFTNRG---------DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAA 85 (222)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCC---------CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHH
Confidence 44444443 277889999999999999999995443 33456677775432 22378999999999999
Q ss_pred HHHHhcCCcEEEeccccccCccccc
Q psy7343 349 ACLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
+.+ +.||+.++.= -.||.+++
T Consensus 86 ~a~-~aGA~FiVsP---~~~~~v~~ 106 (222)
T PRK07114 86 LYI-QLGANFIVTP---LFNPDIAK 106 (222)
T ss_pred HHH-HcCCCEEECC---CCCHHHHH
Confidence 999 7999988732 24555543
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.37 Score=48.70 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=57.0
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++..-..+.++.+.+.+ ++||++.=+-.+.+++.++. ++.|||
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~-~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPG-SLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccc-cCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 455778888889999999999966554432 122222235555555554 68998655545666554443 357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
+||+....+..|
T Consensus 98 ~v~v~pP~y~~~ 109 (294)
T TIGR02313 98 AAMVIVPYYNKP 109 (294)
T ss_pred EEEEcCccCCCC
Confidence 999998877665
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.8 Score=45.76 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=86.2
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCc-c----ccccCChHHHHHHHHHHhhhcc
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY-G----AYLQDDWPLLTNLVSSLRQAVQ 271 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~-G----~~l~~d~~~i~eiv~~v~~~~~ 271 (487)
.++|++..+. |-+++++++++..+... .|.| +.+.. . +-+.++-..+.+.++...+.++
T Consensus 142 ~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~I-----------KDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG 210 (412)
T TIGR03326 142 KDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLL-----------KDDENLTSQPFNRFEERVEKLYKVRDKVEAETG 210 (412)
T ss_pred CCCceEEeeccccccCChHHHHHHHHHHHhcCCcee-----------ecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 3588876654 67899999988776665 3333 22221 0 1112334455555555555665
Q ss_pred CcE--EEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCCCcEEE----cC---
Q psy7343 272 VPV--SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALTIPVIA----NG--- 339 (487)
Q Consensus 272 iPV--~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~----nG--- 339 (487)
-.. .+|+ ..+.++..+-++.+.+.|+..+||..- ..| |..+..+++ ..++||.+ .|
T Consensus 211 ~~~~ya~Ni--T~~~~em~~ra~~~~~~G~~~~mv~~~-------~~G---~~~l~~l~~~~~~~~l~ih~Hra~~ga~~ 278 (412)
T TIGR03326 211 ERKEYLANI--TAPVREMERRAELVADLGGQYVMVDVV-------VCG---WSALQYIRELTEDLGLAIHAHRAMHAAFT 278 (412)
T ss_pred CcceEEEEe--cCCHHHHHHHHHHHHHhCCCeEEEEee-------ccc---hHHHHHHHHhhccCCeEEEEcCCcccccc
Confidence 544 3454 445667788888888999999999321 112 455666665 56788886 22
Q ss_pred -----CCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 340 -----NIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 340 -----gI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
||.. .-..++....|+|.+.++..
T Consensus 279 ~~~~~Gis~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 279 RNPKHGISM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred cCCCCcCcH-HHHHHHHHHcCCCeeeeCCC
Confidence 5544 33667776789999998863
|
Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=92.73 E-value=2 Score=40.30 Aligned_cols=128 Identities=20% Similarity=0.192 Sum_probs=79.2
Q ss_pred eeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh-ccCcEEEEeeccccccc
Q psy7343 208 IQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-VQVPVSCKIRIYQDVNK 286 (487)
Q Consensus 208 Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-~~iPV~vKiR~~~d~~~ 286 (487)
+-|...+.++..++++.+.+..+.|++ |-|. +.. .| . +.++.+++. .++|+.+-+-+. +..
T Consensus 5 ~a~d~~~~~~~~~~~~~l~~~i~~iei--g~~~-~~~---~g------~----~~i~~i~~~~~~~~i~~~~~v~-~~~- 66 (202)
T cd04726 5 VALDLLDLEEALELAKKVPDGVDIIEA--GTPL-IKS---EG------M----EAVRALREAFPDKIIVADLKTA-DAG- 66 (202)
T ss_pred EEEcCCCHHHHHHHHHHhhhcCCEEEc--CCHH-HHH---hC------H----HHHHHHHHHCCCCEEEEEEEec-ccc-
Confidence 334445788888888888777888888 3322 111 11 2 344556554 477887743221 221
Q ss_pred HHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc-CCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN-GNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 287 ~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n-GgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
..+++.+.++|+|++++|+..... ..-+.++.++ ..+++++.. =+..|++++.+++ ..|+|.|.++.
T Consensus 67 -~~~~~~~~~aGad~i~~h~~~~~~-------~~~~~i~~~~-~~g~~~~v~~~~~~t~~e~~~~~-~~~~d~v~~~~ 134 (202)
T cd04726 67 -ALEAEMAFKAGADIVTVLGAAPLS-------TIKKAVKAAK-KYGKEVQVDLIGVEDPEKRAKLL-KLGVDIVILHR 134 (202)
T ss_pred -HHHHHHHHhcCCCEEEEEeeCCHH-------HHHHHHHHHH-HcCCeEEEEEeCCCCHHHHHHHH-HCCCCEEEEcC
Confidence 244678889999999999763110 0123444444 357777753 5778899988866 67999998853
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.4 Score=46.60 Aligned_cols=143 Identities=17% Similarity=0.202 Sum_probs=88.2
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEE--eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcE
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV 274 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~Id--iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV 274 (487)
.++|++..+. |-+++++++++..+... .|.|- =|++.|. =+.+.++-+.+.+.++...+.++-..
T Consensus 141 ~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~--------~~p~~eRv~~~~~a~~~a~~eTG~~~ 212 (406)
T cd08207 141 EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPP--------YSPLDERVRAVMRVINDHAQRTGRKV 212 (406)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC--------CCcHHHHHHHHHHHHHHHHHhhCCcc
Confidence 4689877654 67899999988766555 23220 1111110 01112334455555555555666554
Q ss_pred EEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE----cC--------CCC
Q psy7343 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA----NG--------NIQ 342 (487)
Q Consensus 275 ~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~----nG--------gI~ 342 (487)
..-..+..+.++..+-++.+.+.|++.+||..- ..-|..+..+++..++||.+ .| ||.
T Consensus 213 ~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~----------~~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p~~Gis 282 (406)
T cd08207 213 MYAFNITDDIDEMRRNHDLVVEAGGTCVMVSLN----------SVGLSGLAALRRHSQLPIHGHRNGWGMLTRSPALGIS 282 (406)
T ss_pred eEEEecCCCHHHHHHHHHHHHHhCCCeEEEecc----------ccchHHHHHHHhcCCceEEECCCcceecccCCCCCCc
Confidence 333323445667777788889999999999321 22356778888888899883 34 343
Q ss_pred CHHHHHHHHHhcCCcEEEecc
Q psy7343 343 CLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiGR 363 (487)
. .-..++..-.|+|.+.++.
T Consensus 283 ~-~vl~kl~RLaGaD~~~~~~ 302 (406)
T cd08207 283 F-QAYQKLWRLAGVDHLHVNG 302 (406)
T ss_pred H-HHHHHHHHHcCCCccccCC
Confidence 3 3366777678999999886
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.84 Score=45.96 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=56.2
Q ss_pred HHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh----h-CCC
Q psy7343 260 TNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK----A-LTI 333 (487)
Q Consensus 260 ~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~----~-~~i 333 (487)
.+.++.+++.. ..++.+-. ++..++.+. .++|+|.|++. . + +.+.+++..+ . -++
T Consensus 187 ~~ai~~~r~~~~~~kIeVEv------~tl~ea~ea-l~~gaDiI~LD-n-------m----~~e~vk~av~~~~~~~~~v 247 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEVEV------DSLEQLDEV-LAEGAELVLLD-N-------F----PVWQTQEAVQRRDARAPTV 247 (289)
T ss_pred HHHHHHHHHhCCCCCEEEEc------CCHHHHHHH-HHcCCCEEEeC-C-------C----CHHHHHHHHHHHhccCCCE
Confidence 34455555543 34555543 355555444 47999999992 1 1 1233333322 2 267
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.+.++|||+ .+.+.++. .+|+|.+.+|.-...-|+
T Consensus 248 ~ieaSGGI~-~~ni~~yA-~tGvD~Is~galt~sa~~ 282 (289)
T PRK07896 248 LLESSGGLT-LDTAAAYA-ETGVDYLAVGALTHSVPV 282 (289)
T ss_pred EEEEECCCC-HHHHHHHH-hcCCCEEEeChhhcCCCc
Confidence 799999995 78888887 799999999975543343
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=1.7 Score=43.86 Aligned_cols=99 Identities=23% Similarity=0.304 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---h
Q psy7343 256 WPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---A 330 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~ 330 (487)
.+.+..+++.+.+.. ++||.+.. |-. ..+.++.+.+.|++.||+-+-. +.-.-+.+..+++++ .
T Consensus 60 ~~~~~~~~~~~a~~~~~~vPV~lHL----DH~-~~~~i~~ai~~GftSVm~d~S~------l~~eEni~~t~~v~~~a~~ 128 (293)
T PRK07315 60 YKVCKNLIENLVESMGITVPVAIHL----DHG-HYEDALECIEVGYTSIMFDGSH------LPVEENLKLAKEVVEKAHA 128 (293)
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEEC----CCC-CHHHHHHHHHcCCCEEEEcCCC------CCHHHHHHHHHHHHHHHHH
Confidence 455677777777666 77999998 555 3556667778999999993221 111223344444443 2
Q ss_pred CCCcEEE--------------cCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 331 LTIPVIA--------------NGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 331 ~~iPVi~--------------nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
.+++|-+ ....++++++.++. ++|+|.+.+|=|-.
T Consensus 129 ~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~-~tgvD~LAv~iG~v 177 (293)
T PRK07315 129 KGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV-ETGIDFLAAGIGNI 177 (293)
T ss_pred cCCEEEEecCcccCcCccccCccCCCCHHHHHHHH-HcCCCEEeeccccc
Confidence 3444321 11138999999999 79999999994433
|
|
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.6 Score=44.29 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=51.1
Q ss_pred cccHHHHHHHHHH-----cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 284 VNKTVEYARMLER-----AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 284 ~~~~~e~a~~le~-----~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
.++..++.+.++- +|+|.||+..-.... -....+.+.+++..+.+ ..|+.++|||+ .+.+.++. .+|+
T Consensus 210 v~tleea~ea~~~~~~~~agaDiImLDnm~~~~---~~~~~~~e~l~~av~~~~~~~~lEaSGGIt-~~ni~~yA-~tGV 284 (308)
T PLN02716 210 TRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPL---ENGDVDVSMLKEAVELINGRFETEASGNVT-LDTVHKIG-QTGV 284 (308)
T ss_pred ECCHHHHHHHHHhcccccCCCCEEEeCCCcccc---cccCCCHHHHHHHHHhhCCCceEEEECCCC-HHHHHHHH-HcCC
Confidence 3455565555541 899999993220000 01112445555554443 47899999995 78888887 7999
Q ss_pred cEEEeccccccCcc
Q psy7343 357 AGVMTAEGNLYNPA 370 (487)
Q Consensus 357 d~VmiGRa~l~~P~ 370 (487)
|.+.+|.--..-|+
T Consensus 285 D~Is~Galthsa~~ 298 (308)
T PLN02716 285 TYISSGALTHSVKA 298 (308)
T ss_pred CEEEeCccccCCCc
Confidence 99999974443343
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.42 Score=48.46 Aligned_cols=87 Identities=25% Similarity=0.287 Sum_probs=57.9
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEc-CCCCCHHHHH--HHHHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIAN-GNIQCLADVE--ACLAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~n-GgI~s~~da~--~~l~~~Gad 357 (487)
|.+...+.++.+.+.|+|+|.+-|-|.+.. .++-.-..+.++.+++.+ ++|||+. |...+.+.++ +..++.|+|
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~GttGE~~-~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad 101 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTTGESP-TLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGAD 101 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccch-hcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCC
Confidence 556778888999999999999955554322 122212235566667766 6888874 5554544333 224468999
Q ss_pred EEEeccccccCcc
Q psy7343 358 GVMTAEGNLYNPA 370 (487)
Q Consensus 358 ~VmiGRa~l~~P~ 370 (487)
++|+-...+..|.
T Consensus 102 ~il~v~PyY~k~~ 114 (299)
T COG0329 102 GILVVPPYYNKPS 114 (299)
T ss_pred EEEEeCCCCcCCC
Confidence 9999988887775
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=92.46 E-value=2.4 Score=43.74 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=75.8
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...+ .++..|+-|=+..+. .. .+.....+..|.+...++++... ..+++|-+-+ ++
T Consensus 75 ~VPValHLDHg~~~e~i~~---ai~~GftSVMiDgS~-l~---~~~~~~p~eENI~~Tkevve~Ah-~~Gv~VEaELG~v 146 (347)
T PRK09196 75 HIPVVMHQDHGNSPATCQR---AIQLGFTSVMMDGSL-KA---DGKTPASYEYNVDVTRKVVEMAH-ACGVSVEGELGCL 146 (347)
T ss_pred CCcEEEECCCCCCHHHHHH---HHHcCCCEEEecCCC-Cc---ccCCCCCHHHHHHHHHHHHHHHH-HcCCeEEEEEeec
Confidence 368999987 555554333 233333332222111 00 00001123456667777776553 3477666543 22
Q ss_pred ccc----------------------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-------CCCHHHHHHHHhhC
Q psy7343 281 YQD----------------------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-------LASWEHITAVRKAL 331 (487)
Q Consensus 281 ~~d----------------------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-------~~~~~~i~~i~~~~ 331 (487)
+.. ..+..++.+.++++|+|.+.|.-.|.-.. |.+ .-+++.+++|++.+
T Consensus 147 gg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~--Yk~~~~p~~~~LdfdrL~eI~~~v 224 (347)
T PRK09196 147 GSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGA--YKFTRKPTGDVLAIDRIKEIHARL 224 (347)
T ss_pred cCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCC--CCCCCCCChhhccHHHHHHHHhcC
Confidence 210 23578888889999999997622222211 332 15889999999999
Q ss_pred -CCcEEEcCCCCCHHHH
Q psy7343 332 -TIPVIANGNIQCLADV 347 (487)
Q Consensus 332 -~iPVi~nGgI~s~~da 347 (487)
++|++.-|+=..++|.
T Consensus 225 ~~vPLVLHGgSG~~~~~ 241 (347)
T PRK09196 225 PNTHLVMHGSSSVPQEL 241 (347)
T ss_pred CCCCEEEeCCCCCCHHH
Confidence 7999987766554443
|
|
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.42 E-value=4.2 Score=40.70 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~ 332 (487)
.+.+..+++.+.+..++||.... |--...+.+....+.|...+|+.|-. +.-.-+....+++.+ ..+
T Consensus 60 ~~~~~~~v~~~a~~~~vPV~lHl----DHg~~~~~~~~ai~~GFsSvMiDgS~------~~~eENi~~tkevv~~ah~~g 129 (286)
T COG0191 60 ADSLAHMVKALAEKYGVPVALHL----DHGASFEDCKQAIRAGFSSVMIDGSH------LPFEENIAITKEVVEFAHAYG 129 (286)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHhcCCceEEecCCc------CCHHHHHHHHHHHHHHHHHcC
Confidence 56778888888888899999987 65556666777778999999995431 111123344444433 235
Q ss_pred CcEEE----cCC-------------CCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 333 IPVIA----NGN-------------IQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 333 iPVi~----nGg-------------I~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
++|-+ .|| ..+++++.++.+.+|+|...++=|-...++-+
T Consensus 130 vsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~ 186 (286)
T COG0191 130 VSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKP 186 (286)
T ss_pred CcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCC
Confidence 55432 232 56788999999899999998887776666665
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.1 Score=46.78 Aligned_cols=103 Identities=22% Similarity=0.338 Sum_probs=69.0
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEeec----ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRI----YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKiR~----~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~ 328 (487)
++|.+.+..-++++++. +.-+.+-+.. --+.+.+.++++.+.+.|+|.|+| +...|-.+....++.++.+|
T Consensus 121 lND~RNl~~ai~a~kk~-G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIci----KDmaGlltP~~ayelVk~iK 195 (472)
T COG5016 121 LNDVRNLKTAIKAAKKH-GAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICI----KDMAGLLTPYEAYELVKAIK 195 (472)
T ss_pred ccchhHHHHHHHHHHhc-CceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEe----ecccccCChHHHHHHHHHHH
Confidence 57888888777777754 3333333322 225567899999999999999999 23333344445689999999
Q ss_pred hhCCCcEEEc----CCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 329 KALTIPVIAN----GNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 329 ~~~~iPVi~n----GgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+.+++||..- -|+.... ..+.+ +.|+|++-.+
T Consensus 196 ~~~~~pv~lHtH~TsG~a~m~-ylkAv-EAGvD~iDTA 231 (472)
T COG5016 196 KELPVPVELHTHATSGMAEMT-YLKAV-EAGVDGIDTA 231 (472)
T ss_pred HhcCCeeEEecccccchHHHH-HHHHH-HhCcchhhhh
Confidence 9999999753 4443332 33444 5799887533
|
|
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=92.39 E-value=2.2 Score=44.98 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=77.0
Q ss_pred CHHHHHHHHHhh-CC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLA-EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~-~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~ 290 (487)
+++++.+.++.+ ++ .|..+-|..|. .+++.-.+.++++++.++ +.+.+-.--+|+.++..++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 566666555433 33 46555554332 134444556777777762 3333332224566677888
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
++.+++ ++..+- | + .. +++..+++++.+++||.+.-.+.+.+++.++++...+|.++
T Consensus 233 ~~~l~~-~l~~iE-------e-P-~~---d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~ 289 (395)
T cd03323 233 AKELEG-VLAYLE-------D-P-CG---GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPL 289 (395)
T ss_pred HHhcCc-CCCEEE-------C-C-CC---CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEe
Confidence 888877 666542 2 1 21 78889999999999999977889999999999766677773
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=92.37 E-value=3.3 Score=42.05 Aligned_cols=95 Identities=9% Similarity=0.079 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHH---cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh
Q psy7343 255 DWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLER---AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~---~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~ 329 (487)
+++.-.+.++++++.++ +.+.+-.--+|+..+..++++.+++ .+++.|- | + . ...+..+++++
T Consensus 136 ~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iE-------q-P-~---~~~~~~~~l~~ 203 (307)
T TIGR01927 136 ELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLE-------E-P-L---PDADEMSAFSE 203 (307)
T ss_pred ChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCceEEe-------C-C-C---CCHHHHHHHHH
Confidence 34444566667777653 2222222124566677788888886 5565552 1 1 1 22377888999
Q ss_pred hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 330 ~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.+++||.+.=.+.+..|+.++++...+|.+.+
T Consensus 204 ~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~i 235 (307)
T TIGR01927 204 ATGTAIALDESLWELPQLADEYGPGWRGALVI 235 (307)
T ss_pred hCCCCEEeCCCcCChHHHHHHHhcCCCceEEE
Confidence 99999999989999999999995544566653
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.47 Score=48.12 Aligned_cols=85 Identities=20% Similarity=0.116 Sum_probs=54.5
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+-|-|.+.. .++..-..+.++.+.+.+ ++||++.-+- +.+++.++. ++.|+|
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~-~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFF-SLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcc-cCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 455778888899999999999955443322 122211235555566655 6899865453 555555443 457999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
+||+....+..|
T Consensus 104 av~~~pP~y~~~ 115 (303)
T PRK03620 104 GILLLPPYLTEA 115 (303)
T ss_pred EEEECCCCCCCC
Confidence 999977655544
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.31 E-value=1 Score=44.41 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=75.1
Q ss_pred ccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCC-CCCCCCHHHHHHHHhh
Q psy7343 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM-NTGLASWEHITAVRKA 330 (487)
Q Consensus 252 l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~-~~g~~~~~~i~~i~~~ 330 (487)
.+.|.+++.+ +- +.+.||..|=-++-+++++...++.+...|...|++--|+-..... ....-|...+..+|+.
T Consensus 138 NMQNF~LLke----~G-~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~ 212 (286)
T COG2876 138 NMQNFALLKE----VG-RQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQE 212 (286)
T ss_pred chhhhHHHHH----hc-ccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhh
Confidence 3457777665 22 3489999997666678889999999999999999885554322111 2233577899999999
Q ss_pred CCCcEEEcCCCCCH-HHH-----HHHHHhcCCcEEEeccccccCccc
Q psy7343 331 LTIPVIANGNIQCL-ADV-----EACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 331 ~~iPVi~nGgI~s~-~da-----~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.++|||++=.-.+. .|. ...+ ..||||+|+- ...||..
T Consensus 213 THLPVivDpSH~~Grr~lv~pla~AA~-AaGAdglmiE--VHp~P~~ 256 (286)
T COG2876 213 THLPVIVDPSHATGRRDLVEPLAKAAI-AAGADGLMIE--VHPDPEK 256 (286)
T ss_pred cCCCEEECCCCcccchhhHHHHHHHHH-hccCCeeEEE--ecCCccc
Confidence 99999985222221 122 2233 5799999985 4455554
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=92.29 E-value=13 Score=36.94 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=88.7
Q ss_pred chhhhcChhHHHHHHh----cCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChH
Q psy7343 183 AHQFIADKKLRQEILM----STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWP 257 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~ 257 (487)
|.......+...++++ ....+.||++.+.+.+.++..+.++.+++. +|+|-+. -|. +- ..+.+
T Consensus 42 GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~--pP~-------y~---~~~~~ 109 (281)
T cd00408 42 GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVV--PPY-------YN---KPSQE 109 (281)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEC--CCc-------CC---CCCHH
Confidence 4444444433444442 334568999999988888889999988887 6665542 122 11 12456
Q ss_pred HHHHHHHHHhhhccCcEEE-EeecccccccHHHHHHHHHHc-CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-Cc
Q psy7343 258 LLTNLVSSLRQAVQVPVSC-KIRIYQDVNKTVEYARMLERA-GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IP 334 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~v-KiR~~~d~~~~~e~a~~le~~-G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iP 334 (487)
.+.+..+++.+++++||++ |........-..+..+.+.+. .+.+|-. ...+...+.++.+..+ --
T Consensus 110 ~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~------------s~~d~~~~~~~~~~~~~~~ 177 (281)
T cd00408 110 GIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKD------------SSGDLDRLTRLIALLGPDF 177 (281)
T ss_pred HHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEe------------CCCCHHHHHHHHHhcCCCe
Confidence 7777888888888999987 432211122223444444432 2222222 1146667777766652 22
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+.+|. -+.+...+ ..|++|.+.|.+
T Consensus 178 ~v~~G~---d~~~~~~l-~~G~~G~i~~~~ 203 (281)
T cd00408 178 AVLSGD---DDLLLPAL-ALGADGAISGAA 203 (281)
T ss_pred EEEEcc---hHHHHHHH-HcCCCEEEehHH
Confidence 344454 34455556 589999998864
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.4 Score=43.32 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=64.2
Q ss_pred CChHHHHHHHHHHhhhcc-CcEEEEeecccc-c-ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh
Q psy7343 254 DDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQD-V-NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d-~-~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~ 330 (487)
-..+.+...+++|++.++ .||++-+-.|.. . ++..+.++.+.++|+++|.|-+- ....+.++.+++.
T Consensus 55 vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~----------~~~~~~i~ai~~a 124 (240)
T cd06556 55 YPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGG----------EWHIETLQMLTAA 124 (240)
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCc----------HHHHHHHHHHHHc
Confidence 357777888888888875 799998866532 2 46677788899999999999331 1122455555544
Q ss_pred CCCcEEEcCCCC---------------CHHHHHHHH------HhcCCcEEEec
Q psy7343 331 LTIPVIANGNIQ---------------CLADVEACL------AQTGVAGVMTA 362 (487)
Q Consensus 331 ~~iPVi~nGgI~---------------s~~da~~~l------~~~Gad~VmiG 362 (487)
.+||++==|.. +.+++++++ ++.|||++.+=
T Consensus 125 -~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e 176 (240)
T cd06556 125 -AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVME 176 (240)
T ss_pred -CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 47887643431 223333333 35899999874
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.5 Score=44.56 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=62.2
Q ss_pred HHHHHHHHhhhcc--CcEEEEeecccccc-cHHHHHHHHHHc--CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--
Q psy7343 259 LTNLVSSLRQAVQ--VPVSCKIRIYQDVN-KTVEYARMLERA--GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-- 331 (487)
Q Consensus 259 i~eiv~~v~~~~~--iPV~vKiR~~~d~~-~~~e~a~~le~~--G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-- 331 (487)
+.+.+++.++..+ .|+.+-+.. .+ ...+..+.++.. ++|.|++..-.. ..| ...+.++++++.+
T Consensus 170 ~~~A~~~~~~~~p~~~~i~vevdt---~~~~v~eal~~~~~~~~~~d~I~lDn~~~-----~~G-~~~~~~~~~~~~l~~ 240 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIALIDT---FNDEKEEALKAAKALGDKLDGVRLDTPSS-----RRG-VFRYLIREVRWALDI 240 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEEEEee---cCcchHHHHHHHHHhCCCCcEEEECCCCC-----CCC-CHHHHHHHHHHHHHh
Confidence 3444555555543 467776521 12 244455555443 589999921100 011 1234444444432
Q ss_pred ----CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 332 ----TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 332 ----~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++.++++||| +.+.+.++. .+|+|.+.+|+....-|++
T Consensus 241 ~g~~~~~ieaSGgI-~~~~i~~~a-~~gvD~isvGs~~~~~~~~ 282 (302)
T cd01571 241 RGYKHVKIFVSGGL-DEEDIKELE-DVGVDAFGVGTAISKAPPV 282 (302)
T ss_pred CCCCCeEEEEeCCC-CHHHHHHHH-HcCCCEEECCcccCCCCCC
Confidence 3669999999 788898887 7899999999988877665
|
Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=92.20 E-value=1.9 Score=42.89 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=63.0
Q ss_pred chhhhcChhHHHHHHhcCCCCCCeeeeeccC-CHHHHHHHHHhhCCc-C-cEEEeecCCCcceeeccCc-cc-cccCChH
Q psy7343 183 AHQFIADKKLRQEILMSTPEDRPLIIQFCGN-DSKNLTEAAKLAEPH-C-DGIDINIGCPQMVAKRGHY-GA-YLQDDWP 257 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~-d~~~~~~aa~~~~~~-~-d~IdiN~GcP~~i~~~gr~-G~-~l~~d~~ 257 (487)
++..+.+.+.+..+ ...+.||.+|-... +.+++..+++.+.+. . +.+=+++|... | +. ....|+.
T Consensus 115 ~s~~~~n~~LL~~~---a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~-------y~~~~~~~~dl~ 184 (260)
T TIGR01361 115 GARNMQNFELLKEV---GKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRT-------FEKATRNTLDLS 184 (260)
T ss_pred CcccccCHHHHHHH---hcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCC-------CCCCCcCCcCHH
Confidence 44445555444333 34578999998744 899999999988765 1 22222333211 1 11 1123444
Q ss_pred HHHHHHHHHhhhccCcEEEEeec-ccccccHHHHHHHHHHcCCcEEEE
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRI-YQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~-~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
.+. .+++..+.||.+.-.- ++..+-....+......|+++++|
T Consensus 185 ~i~----~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~i 228 (260)
T TIGR01361 185 AVP----VLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMI 228 (260)
T ss_pred HHH----HHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEE
Confidence 433 4666668999995321 112233466777888999998777
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.8 Score=43.75 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEc
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHG 306 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~Vhg 306 (487)
.++.+.+.++.|.+.+++||++-+--|. +..+..+.++.++++|+.+|.|-.
T Consensus 59 ~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IED 111 (290)
T TIGR02321 59 SMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMED 111 (290)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeC
Confidence 5777778888888899999999886643 333567778999999999999944
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=3.5 Score=42.11 Aligned_cols=96 Identities=8% Similarity=0.153 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHH---cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh
Q psy7343 256 WPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLER---AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~---~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~ 330 (487)
++.-.+.++++++.++ +.+.+-.--+|+.++..++++.+++ .++..|- | + . ...+++..+++++.
T Consensus 146 ~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i~~iE-------q-P-~-~~~~~~~~~~l~~~ 215 (320)
T PRK02714 146 LEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKIEFIE-------Q-P-L-PPDQFDEMLQLSQD 215 (320)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCccEEE-------C-C-C-CcccHHHHHHHHHh
Confidence 4444556667777663 3344332224566677777788877 4555442 2 1 1 12367888999999
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 331 ~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+++||.+.=.+.+..|+.++++...+|.|++
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~i 246 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVI 246 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEE
Confidence 9999999999999999999995545565543
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.53 Score=47.39 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=55.4
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+.....++.+.+.|+++|.+-|-|.+.. .++..-..+.++.+.+.+ ++|||+.-+- +.+++.++. ++.|||
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~-~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFF-SLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcc-cCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 455677888889999999999955544432 122111224555555655 6899986554 556655543 458999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++|+....+..|
T Consensus 97 ~v~~~pP~y~~~ 108 (289)
T cd00951 97 GILLLPPYLTEA 108 (289)
T ss_pred EEEECCCCCCCC
Confidence 999987766554
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=23 Score=39.43 Aligned_cols=105 Identities=19% Similarity=0.309 Sum_probs=63.7
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~ 329 (487)
+|.+.+...++.+++. +..+.+.+... .+.+...++++.++++|+|.|.+- ...|......-.++++.+++
T Consensus 121 nd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~----Dt~G~l~P~~~~~lv~~lk~ 195 (593)
T PRK14040 121 NDPRNLETALKAVRKV-GAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIK----DMAGLLKPYAAYELVSRIKK 195 (593)
T ss_pred CcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEEC----CCCCCcCHHHHHHHHHHHHH
Confidence 4566777777777764 54443333321 123457888999999999999882 22222222234588889998
Q ss_pred hCCCcEEEcCCCCCHH---HHHHHHHhcCCcEEEeccc
Q psy7343 330 ALTIPVIANGNIQCLA---DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 330 ~~~iPVi~nGgI~s~~---da~~~l~~~Gad~VmiGRa 364 (487)
.+++||-.-+-=+..- .....+ +.|||.|-..-.
T Consensus 196 ~~~~pi~~H~Hnt~GlA~An~laAi-eAGa~~vD~ai~ 232 (593)
T PRK14040 196 RVDVPLHLHCHATTGLSTATLLKAI-EAGIDGVDTAIS 232 (593)
T ss_pred hcCCeEEEEECCCCchHHHHHHHHH-HcCCCEEEeccc
Confidence 8888886533222222 233444 579998875433
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.77 Score=45.91 Aligned_cols=112 Identities=17% Similarity=0.065 Sum_probs=70.4
Q ss_pred chHHHHHHHHhCCccceecccc--chhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCC
Q psy7343 161 ELPWRLLSRRYGSHLCYTPMVS--AHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGC 238 (487)
Q Consensus 161 d~~fr~i~~~~Ga~l~~t~~v~--~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~Gc 238 (487)
+.+|..++.+.| ||++.+. |..++.+++...++.+. .+.||+.+++-. .+.++-.+.+-..|.|| +
T Consensus 35 ~~g~~~v~~~~~---~psd~~~~gg~~Rm~~p~~I~aIk~~--V~iPVigk~Rig---h~~Ea~~L~~~GvDiID----~ 102 (293)
T PRK04180 35 EAGAVAVMALER---VPADIRAAGGVARMADPKMIEEIMDA--VSIPVMAKARIG---HFVEAQILEALGVDYID----E 102 (293)
T ss_pred HhChHHHHHccC---CCchHhhcCCeeecCCHHHHHHHHHh--CCCCeEEeehhh---HHHHHHHHHHcCCCEEe----c
Confidence 344566666777 8888765 55677888888876654 379999998831 14454444433467664 2
Q ss_pred CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEE
Q psy7343 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVH 305 (487)
Q Consensus 239 P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vh 305 (487)
+.+ .+| ..+++..+|...++|+.+-. .+..+ +....+.|+|.|--.
T Consensus 103 ------Te~------lrp--ad~~~~~~K~~f~~~fmad~------~~l~E-Alrai~~GadmI~Tt 148 (293)
T PRK04180 103 ------SEV------LTP--ADEEYHIDKWDFTVPFVCGA------RNLGE-ALRRIAEGAAMIRTK 148 (293)
T ss_pred ------cCC------CCc--hHHHHHHHHHHcCCCEEccC------CCHHH-HHHHHHCCCCeeecc
Confidence 111 123 44666677777788988854 34444 445556799988654
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=92.01 E-value=4.1 Score=38.51 Aligned_cols=129 Identities=18% Similarity=0.143 Sum_probs=73.3
Q ss_pred eeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccc
Q psy7343 207 IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVN 285 (487)
Q Consensus 207 ~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~ 285 (487)
.|-+...+.++..+.++.+....+.||+.... ... .| .+ +++.+++.. +..+.+-+.+- |..
T Consensus 3 ~~alD~~~~~~a~~~~~~l~~~v~~iev~~~l---~~~---~g------~~----~i~~l~~~~~~~~i~~d~k~~-d~~ 65 (206)
T TIGR03128 3 QLALDLLDIEEALELAEKVADYVDIIEIGTPL---IKN---EG------IE----AVKEMKEAFPDRKVLADLKTM-DAG 65 (206)
T ss_pred EEEecCCCHHHHHHHHHHcccCeeEEEeCCHH---HHH---hC------HH----HHHHHHHHCCCCEEEEEEeec-cch
Confidence 34455678888888888885447777773111 111 11 23 344455442 34444433221 222
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC-HHHHHHHHhhCCCcEEEc-CCCCC-HHHHHHHHHhcCCcEEEec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS-WEHITAVRKALTIPVIAN-GNIQC-LADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~-~~~i~~i~~~~~iPVi~n-GgI~s-~~da~~~l~~~Gad~VmiG 362 (487)
+ ..++.+.++|+|.|.+|+-+. ... .+.++.+++ .+++++.. =+..+ .+++..+. +.|+|.|.+.
T Consensus 66 ~--~~~~~~~~~Gad~i~vh~~~~--------~~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~-~~g~d~v~~~ 133 (206)
T TIGR03128 66 E--YEAEQAFAAGADIVTVLGVAD--------DATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELK-ELGADYIGVH 133 (206)
T ss_pred H--HHHHHHHHcCCCEEEEeccCC--------HHHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHH-HcCCCEEEEc
Confidence 2 136778899999999986531 112 234444444 58888764 23444 46777776 5699999775
Q ss_pred cc
Q psy7343 363 EG 364 (487)
Q Consensus 363 Ra 364 (487)
.+
T Consensus 134 pg 135 (206)
T TIGR03128 134 TG 135 (206)
T ss_pred CC
Confidence 43
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.54 Score=47.14 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=54.1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+.|-+.+.. .++..-..+.++.+.+.+ ++||++.=+-.+.+++.++. ++.|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~-~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gad 98 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQ-LMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMH 98 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchh-hCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCC
Confidence 455678888888999999999966554322 122111224455555554 58988654444455555443 358999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
+||+.-+.+..|
T Consensus 99 av~~~~P~y~~~ 110 (280)
T PLN02417 99 AALHINPYYGKT 110 (280)
T ss_pred EEEEcCCccCCC
Confidence 999987766554
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.81 Score=44.85 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecc-cc-cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC--CH-HHHHHHHh
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIY-QD-VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA--SW-EHITAVRK 329 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~-~d-~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~--~~-~~i~~i~~ 329 (487)
.++.+.+.++.|.+.+++||++-+.-| ++ ..+..+.++.++++|+.+|.|--. + .+ ..+.. .. +.+.+|+.
T Consensus 53 t~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq-~--~~-~~~~~l~~~ee~~~kI~A 128 (238)
T PF13714_consen 53 TLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQ-R--CG-HGGKQLVSPEEMVAKIRA 128 (238)
T ss_dssp -HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB-S--TT-TSTT-B--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeecc-c--cC-CCCCceeCHHHHHHHHHH
Confidence 467777888888888999999998776 33 567888999999999999999433 0 01 11111 22 44444443
Q ss_pred h------CCCcEEEcCCCCC--HHHHHHHHH------hcCCcEEEec
Q psy7343 330 A------LTIPVIANGNIQC--LADVEACLA------QTGVAGVMTA 362 (487)
Q Consensus 330 ~------~~iPVi~nGgI~s--~~da~~~l~------~~Gad~VmiG 362 (487)
. .++-|++==|... .+...+.++ +.|||+|++=
T Consensus 129 a~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~ 175 (238)
T PF13714_consen 129 AVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIP 175 (238)
T ss_dssp HHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEET
T ss_pred HHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 2 2444555434422 333433332 4799999864
|
... |
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.92 E-value=1 Score=44.72 Aligned_cols=94 Identities=27% Similarity=0.311 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh--C--CCc
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--L--TIP 334 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--~--~iP 334 (487)
+.+.++.+|+.. |...|+= ...++..++. ...++|+|.||+..- ..+.+++..+. . ++-
T Consensus 174 i~~Av~~aR~~~--~~~~kIE--VEvesle~~~-eAl~agaDiImLDNm------------~~e~~~~av~~l~~~~~~~ 236 (280)
T COG0157 174 ITEAVRRARAAA--PFTKKIE--VEVESLEEAE-EALEAGADIIMLDNM------------SPEELKEAVKLLGLAGRAL 236 (280)
T ss_pred HHHHHHHHHHhC--CCCceEE--EEcCCHHHHH-HHHHcCCCEEEecCC------------CHHHHHHHHHHhccCCceE
Confidence 344555555543 4444431 1344555554 455689999999322 12334443333 2 455
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+-++|||+ .+.+.++. .+|+|.+.+|.--..-|++
T Consensus 237 lEaSGgIt-~~ni~~yA-~tGVD~IS~galths~~~l 271 (280)
T COG0157 237 LEASGGIT-LENIREYA-ETGVDVISVGALTHSAPAL 271 (280)
T ss_pred EEEeCCCC-HHHHHHHh-hcCCCEEEeCccccCCccc
Confidence 67899995 78888887 7999999999876666765
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=91.89 E-value=4.2 Score=41.96 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC-CCCCCCCHHHHHHHHhh---
Q psy7343 256 WPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG-MNTGLASWEHITAVRKA--- 330 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g-~~~g~~~~~~i~~i~~~--- 330 (487)
.+.+..+++.+.+..+ +||.+.. |-....+.++...++|.+.||+.|-.-.... .+.-.-+....+++.+.
T Consensus 57 ~~~~~~~~~~~ae~~~~VPValHL----DHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~ 132 (347)
T TIGR01521 57 APFLRHLILAAIEEYPHIPVVMHQ----DHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHA 132 (347)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEC----CCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4667777777777775 9999998 5555566677778889999999543211000 00111133444444332
Q ss_pred CCCcEEE-------c---------C---------C--CCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 331 LTIPVIA-------N---------G---------N--IQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 331 ~~iPVi~-------n---------G---------g--I~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.++.|-+ . | + .+++++++++.++||+|...++=|-...
T Consensus 133 ~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG 197 (347)
T TIGR01521 133 VGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHG 197 (347)
T ss_pred cCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccC
Confidence 2443321 0 1 1 5688999999999999988766543333
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.78 Score=43.20 Aligned_cols=80 Identities=23% Similarity=0.301 Sum_probs=60.2
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
+++.=+|.. +.++..+.++.+.+.|++.|-+.-+ +....+.++.+++....-.++.|-+.+.+++..++
T Consensus 13 ~~~~v~r~~-~~~~~~~~~~~~~~~Gv~~vqlr~k---------~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~- 81 (187)
T PRK07455 13 RAIAVIRAP-DLELGLQMAEAVAAGGMRLIEITWN---------SDQPAELISQLREKLPECIIGTGTILTLEDLEEAI- 81 (187)
T ss_pred CEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEeCC---------CCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHH-
Confidence 454444443 6778888999999999999999322 22345777777776666567888999999999999
Q ss_pred hcCCcEEEecc
Q psy7343 353 QTGVAGVMTAE 363 (487)
Q Consensus 353 ~~Gad~VmiGR 363 (487)
+.|||+|+++-
T Consensus 82 ~~gAdgv~~p~ 92 (187)
T PRK07455 82 AAGAQFCFTPH 92 (187)
T ss_pred HcCCCEEECCC
Confidence 79999998774
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.54 Score=47.87 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=55.0
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+-|-|.+.. .++-.-..+.++.+.+.+ ++|||+.=+=.+.+++.++. ++.|+|
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~-~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECA-TLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccch-hCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 555678888889999999999955544322 121111224455555555 59998754444556555443 357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++|+-...+..|
T Consensus 106 ~vlv~~P~y~~~ 117 (309)
T cd00952 106 GTMLGRPMWLPL 117 (309)
T ss_pred EEEECCCcCCCC
Confidence 999998766554
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.3 Score=43.71 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=68.7
Q ss_pred HHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCc-EEEEeecccc---ccc-HHHHHHHH
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP-VSCKIRIYQD---VNK-TVEYARML 294 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iP-V~vKiR~~~d---~~~-~~e~a~~l 294 (487)
.|++++++ +|.|= .|-.......|. -....-..+.....++.|.+.++.| |++-+-.+.- .++ .....+.+
T Consensus 24 sA~l~e~aG~d~i~--vGds~~~~~lG~-pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~ 100 (254)
T cd06557 24 TAKLADEAGVDVIL--VGDSLGMVVLGY-DSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLM 100 (254)
T ss_pred HHHHHHHcCCCEEE--ECHHHHHHHcCC-CCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHH
Confidence 45666665 66663 232112222332 2222345677777888888888999 6665532211 222 23345666
Q ss_pred HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-----------EcCCC----CCHHHHHHHH------Hh
Q psy7343 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-----------ANGNI----QCLADVEACL------AQ 353 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-----------~nGgI----~s~~da~~~l------~~ 353 (487)
+++|+++|.+-+. ....+.|+.++ ..+|||+ ..||. +|.+.+++++ ++
T Consensus 101 ~~aGa~aVkiEd~----------~~~~~~I~al~-~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~ 169 (254)
T cd06557 101 KEAGADAVKLEGG----------AEVAETIRALV-DAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEE 169 (254)
T ss_pred HHhCCeEEEEcCc----------HHHHHHHHHHH-HcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHH
Confidence 6799999999332 11123344433 2378888 45644 2443333333 36
Q ss_pred cCCcEEEe
Q psy7343 354 TGVAGVMT 361 (487)
Q Consensus 354 ~Gad~Vmi 361 (487)
.|||++.+
T Consensus 170 AGA~~i~l 177 (254)
T cd06557 170 AGAFALVL 177 (254)
T ss_pred CCCCEEEE
Confidence 89999865
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.73 E-value=2.1 Score=44.14 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC---CCCCCHHHHHHHHhh-
Q psy7343 256 WPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN---TGLASWEHITAVRKA- 330 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~---~g~~~~~~i~~i~~~- 330 (487)
.+.+..+++.+.+... +||.+.. |-....+.++...++|.+.||+.|-.-.. |. .-.-+.+..+++.+.
T Consensus 59 ~~~~~~~~~~~a~~~~~VPValHL----DHg~~~e~i~~ai~~GftSVMiDgS~l~~--~~~~~p~eENI~~Tkevve~A 132 (347)
T PRK09196 59 EPFLRHLILAAVEEYPHIPVVMHQ----DHGNSPATCQRAIQLGFTSVMMDGSLKAD--GKTPASYEYNVDVTRKVVEMA 132 (347)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEC----CCCCCHHHHHHHHHcCCCEEEecCCCCcc--cCCCCCHHHHHHHHHHHHHHH
Confidence 5567777777777664 8999998 55455566777778999999995432110 01 111133444444432
Q ss_pred --CCCcEEE----cC---------------------C--CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 331 --LTIPVIA----NG---------------------N--IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 331 --~~iPVi~----nG---------------------g--I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+++|-+ .| + .+++++++++.++||+|...++=|
T Consensus 133 h~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiG 195 (347)
T PRK09196 133 HACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIG 195 (347)
T ss_pred HHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhc
Confidence 3444321 11 1 578999999999999998776543
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=2.2 Score=42.92 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh-----C
Q psy7343 258 LLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA-----L 331 (487)
Q Consensus 258 ~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~-----~ 331 (487)
-+.+.++.+++..+ .+|.+-. ++.++ ++.+.++|+|.|++ .. + ..+.++++.+. .
T Consensus 175 ~i~~av~~~r~~~~~~kIeVEv------~tleq-a~ea~~agaDiI~L-Dn-------~----~~e~l~~av~~~~~~~~ 235 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVVEA------DTPKE-AIAALRAQPDVLQL-DK-------F----SPQQATEIAQIAPSLAP 235 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC------CCHHH-HHHHHHcCCCEEEE-CC-------C----CHHHHHHHHHHhhccCC
Confidence 35566666776542 3455543 34444 44555799999999 11 1 22333333322 3
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
++.+.++|||+ .+.+.++. .+|+|.+.+|--...
T Consensus 236 ~~~leaSGGI~-~~ni~~yA-~tGvD~Is~gal~~a 269 (284)
T PRK06096 236 HCTLSLAGGIN-LNTLKNYA-DCGIRLFITSAPYYA 269 (284)
T ss_pred CeEEEEECCCC-HHHHHHHH-hcCCCEEEECccccC
Confidence 67789999995 78888888 799999988865333
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.69 E-value=1.9 Score=45.67 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=63.3
Q ss_pred CCCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEe-e--cCCCcceee---ccCccc-cccCChHHHHHHHHHHhhhc--
Q psy7343 202 EDRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDI-N--IGCPQMVAK---RGHYGA-YLQDDWPLLTNLVSSLRQAV-- 270 (487)
Q Consensus 202 ~~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~Idi-N--~GcP~~i~~---~gr~G~-~l~~d~~~i~eiv~~v~~~~-- 270 (487)
...|+.||+.- .+.+++.++++.+.+. .|+|-+ | .+.|..+.. ....|+ ....-.+...+++..+.+.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 35899999974 3455788888877766 777643 3 122221110 011121 11222344566777777776
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
++||++-+ .+.+..|+.+.+. +||+.|.| ++
T Consensus 341 ~ipIIgvG----GI~sg~Da~e~i~-AGAs~VQv-~T 371 (409)
T PLN02826 341 KIPLVGCG----GVSSGEDAYKKIR-AGASLVQL-YT 371 (409)
T ss_pred CCcEEEEC----CCCCHHHHHHHHH-hCCCeeee-cH
Confidence 68999987 7788888888775 79999999 54
|
|
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.69 E-value=4 Score=44.10 Aligned_cols=196 Identities=15% Similarity=0.179 Sum_probs=104.3
Q ss_pred CCCCCccccccccCCC-chHHHHHHHHhCCccceeccccc-----hhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHH
Q psy7343 145 RLGSPRFILAPMVDAS-ELPWRLLSRRYGSHLCYTPMVSA-----HQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNL 218 (487)
Q Consensus 145 ~~g~~~~~lApma~~t-d~~fr~i~~~~Ga~l~~t~~v~~-----~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~ 218 (487)
..|.+|+++|-|.-.| |..|-....|.| -..|+--| ..+-...+++...+ +.++-..++..--||--+
T Consensus 31 LtGr~PillaGMTPtTVdp~ivAAaAnAG---hwaELAGGGq~t~e~~~~~i~ql~~~l---epG~t~qfN~ifldpylw 104 (717)
T COG4981 31 LTGRSPILLAGMTPTTVDPDIVAAAANAG---HWAELAGGGQVTEEIFTNAIEQLVSLL---EPGRTAQFNSIFLDPYLW 104 (717)
T ss_pred hcCCCCeeecCCCCCcCCHHHHHHHhcCC---ceeeecCCcccCHHHHHHHHHHHHhcc---CCCccceeeEEEechHHh
Confidence 4578899999998665 666666666766 33333221 22212212222222 222222222111133211
Q ss_pred ------HHHHHhhCC--c-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE-EeecccccccHH
Q psy7343 219 ------TEAAKLAEP--H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC-KIRIYQDVNKTV 288 (487)
Q Consensus 219 ------~~aa~~~~~--~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v-KiR~~~d~~~~~ 288 (487)
.++.+.+.. + .++|-|..|.| +.+...|+++.+-. .++|-.+ |= +.++...
T Consensus 105 ~~qig~krLv~kara~G~~I~gvvIsAGIP---------------~le~A~ElI~~L~~-~G~~yv~fKP---GtIeqI~ 165 (717)
T COG4981 105 KLQIGGKRLVQKARASGAPIDGVVISAGIP---------------SLEEAVELIEELGD-DGFPYVAFKP---GTIEQIR 165 (717)
T ss_pred hhcCChHHHHHHHHhcCCCcceEEEecCCC---------------cHHHHHHHHHHHhh-cCceeEEecC---CcHHHHH
Confidence 122222222 2 46666666655 34555566655532 2566443 31 2444555
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH--------HHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh-------
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW--------EHITAVRKALTIPVIANGNIQCLADVEACLAQ------- 353 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~--------~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~------- 353 (487)
...++..+..---|++|=-... -.|.-.| ....+++..-+|-++..|||-|++++..++--
T Consensus 166 svi~IAka~P~~pIilq~egGr----aGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g 241 (717)
T COG4981 166 SVIRIAKANPTFPIILQWEGGR----AGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYG 241 (717)
T ss_pred HHHHHHhcCCCCceEEEEecCc----cCCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcC
Confidence 5555555555445555321111 1122223 44567788889999999999999999988721
Q ss_pred ---cCCcEEEeccccccCc
Q psy7343 354 ---TGVAGVMTAEGNLYNP 369 (487)
Q Consensus 354 ---~Gad~VmiGRa~l~~P 369 (487)
.-.||+.+|+++|.--
T Consensus 242 ~P~MP~DGiLvGtaaMatK 260 (717)
T COG4981 242 FPPMPFDGILVGTAAMATK 260 (717)
T ss_pred CCCCCcceeEechhHHhhh
Confidence 2479999999998764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 487 | ||||
| 1vhn_A | 318 | Crystal Structure Of A Putative Flavin Oxidoreducta | 1e-22 | ||
| 3b0p_A | 350 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 3e-19 | ||
| 3b0v_C | 363 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 2e-16 | ||
| 1h7w_A | 1025 | Dihydropyrimidine Dehydrogenase (Dpd) From Pig Leng | 8e-04 |
| >pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With Flavin Length = 318 | Back alignment and structure |
|
| >pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350 | Back alignment and structure |
|
| >pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In Complex With Trna Length = 363 | Back alignment and structure |
|
| >pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig Length = 1025 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 2e-60
Identities = 79/315 (25%), Positives = 139/315 (44%), Gaps = 30/315 (9%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
+ LAPM ++ +R L+ +G+ ++ MVSA F+ + + + E L+ P +R + +
Sbjct: 5 VKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQ-KTEELLPQPHERNVAV 63
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q G++ L+EAA++ ID+N GCP + V K G G L D +V LR
Sbjct: 64 QIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGA-GGALLKDLRHFRYIVRELR 122
Query: 268 QAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
++V S K R+ + N+ E R+L G + +H RTV Q TG A W+ ++ +
Sbjct: 123 KSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQ--SFTGRAEWKALSVL 180
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ-TRP 378
K IP +G+I D + L ++G G++ A G + P +F +G+ + P
Sbjct: 181 EK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEP 238
Query: 379 AW----ELASEYLDLVAQY-----PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
+ +L+L+ + V R + L R V K
Sbjct: 239 SREEILRTFERHLELLIKTKGERKAVVE--MRKFLAGYTKD---LKGARRFREKVMKIEE 293
Query: 430 IKDLRKAVDMLRERF 444
++ L++ +
Sbjct: 294 VQILKEMFYNFIKEV 308
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
+ LAPM ++ +R L+ +G+ ++ MVSA F+ + + + E L+ P +R + +
Sbjct: 5 VKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQ-KTEELLPQPHERNVAV 63
Query: 139 QRTIF 143
Q IF
Sbjct: 64 Q--IF 66
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 85/362 (23%), Positives = 146/362 (40%), Gaps = 81/362 (22%)
Query: 148 SPRFILAPMVDASELPW---------RLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 198
PR +APMVD R +S L YT M + + R +L
Sbjct: 3 DPRLSVAPMVD-----RTDRHFRFLVRQVSLG--VRL-YTEMTVDQAVLRGNRER--LLA 52
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
PE+ P+ +Q G+D K+L EAA++ E D I++N+GCP A+ G YGA L D
Sbjct: 53 FRPEEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLA 112
Query: 258 LLTNLVSSLRQAVQVPVSCKIRI-------YQDVNKTVEYARMLERAGCQLLAVHGRTVD 310
+ ++ ++ +AV+VPV+ K+R+ Y+ + ++VE + AG ++ VH R+
Sbjct: 113 RVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVE---AMAEAGVKVFVVHARSAL 169
Query: 311 QRGMNTGLASWEHITAVRKALTIP------------------VIANGNIQCLADVEACLA 352
++T + IP + NG I+ L + L
Sbjct: 170 L-ALST-----------KANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK 217
Query: 353 QTGVAGVMTAEGNLYNPALFT-------GQTRP--AWELASEYLDLVAQYPVRLQYARG- 402
+ V GVM +P + G R E+A + + + +G
Sbjct: 218 R--VDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEE-----EVLKGT 270
Query: 403 HVFNMCHHLLTL----PENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPN 458
+ + H+L L P+ R L+ + ++ L +A+ ++ E + E K P
Sbjct: 271 PPWAVLRHMLNLFRGRPKGRLWRRLLSEGRSLQALDRALRLMEEEVGEEGEKEKPGPRGQ 330
Query: 459 YP 460
Sbjct: 331 RE 332
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Length = 311 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 5e-09
Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 29/197 (14%)
Query: 197 LMSTPEDRPLIIQFCGNDSK-NLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQD 254
L + P+I G++ + AK+ + + I++NI CP + H G
Sbjct: 92 LNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNV----KHGGQAFGT 147
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA----VHGRTVD 310
D + LV + + +VP+ K+ V V A+ +E AG L + G D
Sbjct: 148 DPEVAAALVKACKAVSKVPLYVKLSPN--VTDIVPIAKAVEAAGADGLTMINTLMGVRFD 205
Query: 311 QR------GMNTGLASWEHI--TAVR------KALTIPVIANGNIQCLADV-EACLAQTG 355
+ TG S I A++ + + IP+I G + DV E +A
Sbjct: 206 LKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGAS 265
Query: 356 VAGVMTAEGNLYNPALF 372
V TA N +P +
Sbjct: 266 AVAVGTA--NFADPFVC 280
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* Length = 338 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 21/126 (16%)
Query: 283 DVNKTVEYARMLERAGCQLLAV-HGRTVDQR-----GMNTGLASWEHITAVRKALTIPVI 336
D+ + +A+ ++ G L+ G V G A +R+ +
Sbjct: 227 DIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAE-----KIREQADMATG 281
Query: 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVR 396
A G I + E L + L +P A A + L+ PV
Sbjct: 282 AVGMITDGSMAEEILQNGRADLIFIGRELLRDPFF-------ARTAAKQ-LNTEIPAPV- 332
Query: 397 LQYARG 402
QY RG
Sbjct: 333 -QYERG 337
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* Length = 340 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 32/126 (25%), Positives = 39/126 (30%), Gaps = 21/126 (16%)
Query: 283 DVNKTVEYARMLERAGCQLLAV-HGRTVDQR-----GMNTGLASWEHITAVRKALTIPVI 336
V YA+ ++ G L+ V G V R G A +R+ IP
Sbjct: 227 TAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAE-----LIRREADIPTG 281
Query: 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVR 396
A G I E L V L NP + A E L PV
Sbjct: 282 AVGLITSGWQAEEILQNGRADLVFLGRELLRNPYW-------PYAAARE-LGAKISAPV- 332
Query: 397 LQYARG 402
QY RG
Sbjct: 333 -QYERG 337
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 3e-06
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 287 TVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCL 344
TVE A+ R G + HG T +G ++ + V +++ VIA GN+
Sbjct: 128 TVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITP 187
Query: 345 ADVEACLAQTGVAGVM 360
+ + GV +
Sbjct: 188 DMYKRVMD-LGVHCSV 202
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} PDB: 3hf3_A* Length = 349 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 29/127 (22%), Positives = 39/127 (30%), Gaps = 22/127 (17%)
Query: 283 DVNKTVEYARMLERAGCQLLAV-------HGRTVDQRGMNTGLASWEHITAVRKALTIPV 335
+ T+ +AR L+ G LL R G A AVRK + +
Sbjct: 237 SLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFAD-----AVRKRVGLRT 291
Query: 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPV 395
A G I E L V+ L +P A L + + P
Sbjct: 292 GAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPYF-------PLRAAKA-LGVAPEVPP 343
Query: 396 RLQYARG 402
QY RG
Sbjct: 344 --QYQRG 348
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* Length = 363 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 7e-06
Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 19/127 (14%)
Query: 283 DVNKTVEYARMLERAGCQLLAV-------HGRTVDQRGMNTGLASWEHITAVRKALTIPV 335
+ +++E AR + G LL+V +A VR+ +PV
Sbjct: 244 TLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAE-----RVRREAKLPV 298
Query: 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPV 395
+ EA L + V +L +P A+ A E A + +
Sbjct: 299 TSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHW-------AYFAAKELGVEKASWTL 351
Query: 396 RLQYARG 402
YA
Sbjct: 352 PAPYAHW 358
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Length = 244 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 282 QDVNKTVEYARMLERAGCQLLAVHGRT-VDQRGMNTGLASWEHITAVRKALTIPVIANGN 340
+D E L + GC V T + + G G + E + V A PV+A+G
Sbjct: 143 RDGGDLYETLDRLNKEGCARYVV---TDIAKDGTLQGP-NLELLKNVCAATDRPVVASGG 198
Query: 341 IQCLADVEAC--LAQTGVAGV 359
+ L D+ A L GV G
Sbjct: 199 VSSLDDLRAIAGLVPAGVEGA 219
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Length = 244 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 282 QDVNKTVEYARMLERAGCQLLAVHGRT-VDQRGMNTGLASWEHITAVRKALTIPVIANGN 340
D + L+ GC V T + + G G + + + V PVIA+G
Sbjct: 146 TDGGDLWDVLERLDSEGCSRFVV---TDITKDGTLGGP-NLDLLAGVADRTDAPVIASGG 201
Query: 341 IQCLADVEAC--LAQTGVAGV 359
+ L D+ A L GV G
Sbjct: 202 VSSLDDLRAIATLTHRGVEGA 222
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 1e-04
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 3/74 (4%)
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD 346
+V+ +R G ++ + A+ A VIA G A
Sbjct: 138 SVDDGLACQRLGADIIGTTMSGYTTPDTPEE-PDLPLVKALHDA-GCRVIAEGRYNSPAL 195
Query: 347 VEACLAQTGVAGVM 360
+ G V
Sbjct: 196 AAEAIRY-GAWAVT 208
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 287 TVEYARMLERAGCQLLAV----HGRTVDQRGMNTGLASWEHITA-VRKALTIPVIANGNI 341
TVE A+ +E AG ++ H + ++ +T ++ +++P++ I
Sbjct: 230 TVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRI 289
Query: 342 QCLADVEACLAQ 353
+ L++
Sbjct: 290 NDPQVADDILSR 301
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Length = 345 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 34/177 (19%)
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLA-----EPHCDGIDINIGCPQMVAKRGHYGAY 251
L P+ + + G + E + + +++N+ CP +
Sbjct: 122 LQKQPDSKNHFLSLVG---MSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQ----- 173
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLL-----AVHG 306
+ D+ ++S + P+ K+ Y D+ + A + + +G
Sbjct: 174 IAYDFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNG 233
Query: 307 RTVDQRGMNTGLA--------------SWEHITAVRKAL--TIPVIANGNIQCLADV 347
++ + + ++ A K L +I +I G + D
Sbjct: 234 LVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDA 290
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A Length = 241 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 5e-04
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 286 KTVEYARMLERAGCQLLAVHGRT-VDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCL 344
V + L+ G + + T +++ G + + + V+A G I
Sbjct: 145 DPVSLLKRLKEYGLEEIVH---TEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSE 200
Query: 345 ADVEA-----CLAQTGVAGV 359
++ + GV
Sbjct: 201 NSLKTAQKVHTETNGLLKGV 220
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} PDB: 3krz_A* Length = 343 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 19/117 (16%)
Query: 283 DVNKTVEYARMLERAGCQLLAV-HGRTVDQR-----GMNTGLASWEHITAVRKALTIPVI 336
+++ VEY M+ + L+ V G ++ G A ++K I
Sbjct: 228 NIDMMVEYINMI-KDKVDLIDVSSGGLLNVDINLYPGYQVKYAE-----TIKKRCNIKTS 281
Query: 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQY 393
A G I E L+ V L NP + D QY
Sbjct: 282 AVGLITTQELAEEILSNERADLVALGRELLRNPYW-------VLHTYTSKEDWPKQY 331
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 100.0 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 100.0 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 99.94 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 99.94 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 99.93 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.93 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 99.93 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 99.93 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 99.93 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.92 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 99.92 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.91 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.91 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.91 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.91 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.91 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.9 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.89 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 99.89 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 99.89 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.89 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.89 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.88 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 99.88 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.87 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 99.83 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 99.82 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 99.82 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.81 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.81 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.81 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 99.81 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.79 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.78 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 99.78 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.76 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.75 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.74 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.71 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.7 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 99.69 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.65 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 99.61 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 99.6 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.6 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.59 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.57 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.57 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.56 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.53 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.49 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.47 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.44 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.44 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 99.4 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.39 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.38 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 99.32 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.28 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.28 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.26 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 99.25 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.22 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.22 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.16 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.14 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.13 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.1 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.06 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.05 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 99.05 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.04 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.03 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.03 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.98 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.94 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 98.93 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 98.92 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.91 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 98.9 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.9 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.89 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 98.88 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 98.8 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 98.79 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 98.77 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 98.73 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 98.71 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 98.69 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 98.69 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.65 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 98.65 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 98.65 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 98.63 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 98.59 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 98.58 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 98.56 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 98.55 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.54 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 98.5 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.5 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.48 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.47 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 98.45 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 98.45 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 98.44 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.44 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.44 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 98.42 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 98.42 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 98.41 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 98.41 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.39 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 98.38 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 98.37 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 98.37 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 98.37 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 98.37 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.36 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.36 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 98.34 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 98.34 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.33 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 98.32 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.31 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 98.3 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 98.29 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 98.29 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 98.29 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 98.28 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.28 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.27 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.26 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 98.24 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 98.24 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.23 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 98.23 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 98.23 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.22 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.22 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.21 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 98.2 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.19 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.17 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 98.15 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 98.14 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 98.14 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 98.12 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 98.1 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.1 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 98.09 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 98.09 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 98.08 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.06 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 98.06 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 98.06 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.05 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.05 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 98.05 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 98.04 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 98.03 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 98.01 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.01 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 98.0 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 98.0 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 97.99 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 97.99 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 97.98 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 97.98 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 97.97 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 97.96 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 97.96 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 97.95 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 97.94 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 97.93 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 97.93 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 97.92 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 97.91 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 97.91 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 97.91 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 97.9 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 97.89 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 97.87 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 97.86 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 97.86 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 97.86 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 97.86 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 97.86 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 97.84 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 97.83 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 97.82 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 97.79 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 97.77 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.76 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 97.76 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 97.74 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 97.73 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 97.73 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 97.72 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 97.71 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 97.71 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.7 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.7 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 97.69 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.69 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 97.67 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 97.67 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.66 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 97.64 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 97.64 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 97.64 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 97.63 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.63 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 97.62 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 97.61 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 97.61 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 97.6 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 97.6 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 97.58 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 97.57 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 97.57 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 97.56 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 97.56 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 97.55 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 97.55 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 97.53 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 97.53 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 97.49 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 97.49 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 97.47 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 97.46 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 97.45 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.45 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.38 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.38 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 97.37 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 97.34 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 97.31 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 97.31 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 97.3 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 97.28 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 97.28 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 97.27 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 97.27 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 97.27 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 97.22 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 97.21 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 97.19 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.19 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 97.18 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.17 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 97.17 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 97.16 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 97.15 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 97.11 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 97.09 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 97.08 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 97.07 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 97.05 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 97.04 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.04 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.02 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 97.0 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 96.93 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 96.93 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 96.93 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 96.92 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 96.92 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 96.91 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 96.9 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 96.88 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 96.87 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 96.87 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 96.85 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 96.84 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 96.83 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 96.82 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 96.82 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 96.79 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 96.79 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 96.78 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 96.66 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 96.65 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 96.64 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 96.63 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 96.61 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 96.6 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 96.6 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 96.59 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 96.55 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 96.54 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.53 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 96.52 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.51 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 96.48 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 96.45 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 96.44 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 96.39 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 96.38 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 96.36 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 96.35 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 96.34 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 96.32 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 96.32 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 96.3 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 96.29 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 96.28 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 96.28 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 96.22 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 96.22 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 96.21 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 96.17 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 96.1 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 96.09 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 96.09 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.07 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 96.06 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 96.05 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 96.04 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 96.03 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 96.02 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 96.02 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 96.02 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 96.01 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 96.0 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 95.99 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 95.98 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 95.97 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 95.95 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 95.94 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 95.94 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 95.94 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 95.92 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 95.92 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 95.92 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 95.88 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 95.85 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 95.83 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 95.79 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 95.77 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 95.76 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 95.74 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 95.7 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 95.68 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 95.6 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 95.59 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 95.58 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 95.55 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 95.54 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 95.54 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 95.49 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 95.44 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 95.41 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 95.39 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 95.31 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 95.28 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 95.25 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 95.23 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 95.22 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 95.19 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.18 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 95.18 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 95.11 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 95.09 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 95.08 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 94.97 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 94.92 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 94.89 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 94.88 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 94.85 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 94.81 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 94.8 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 94.79 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 94.76 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 94.75 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 94.74 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 94.72 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 94.62 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 94.59 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 94.57 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 94.57 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 94.56 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 94.48 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 94.38 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 94.37 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 94.26 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 94.24 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 94.23 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 94.19 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 94.19 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 94.18 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 94.17 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 94.16 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 94.08 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 93.98 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 93.9 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 93.85 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 93.84 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 93.74 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 93.69 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 93.69 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 93.66 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 93.57 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 93.56 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 93.54 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 93.54 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 93.52 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 93.52 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.52 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 93.5 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 93.5 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 93.5 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 93.36 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 93.33 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 93.31 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 93.3 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 93.27 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 93.23 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 93.14 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 93.12 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 93.1 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 93.04 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 93.03 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 92.91 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 92.9 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 92.9 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 92.88 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 92.84 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 92.77 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 92.77 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 92.75 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 92.68 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 92.62 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 92.54 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 92.5 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 92.3 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 92.29 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 92.24 | |
| 2pcq_A | 283 | Putative dihydrodipicolinate synthase; lyase, lysi | 92.2 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 92.17 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 92.14 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 92.12 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 92.07 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 92.06 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 92.05 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 92.03 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 92.03 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 91.99 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 91.97 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 91.84 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 91.82 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 91.81 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 91.76 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 91.76 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 91.75 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 91.75 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 91.72 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 91.63 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 91.61 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 91.53 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 91.53 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 91.48 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 91.43 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 91.42 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 91.42 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 91.39 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 91.39 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 91.34 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 91.29 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 91.25 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 91.23 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 91.14 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 91.13 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 91.1 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 91.05 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 91.05 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 91.05 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 90.98 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 90.96 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 90.87 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 90.86 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 90.77 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 90.73 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 90.61 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 90.57 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 90.55 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 90.54 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 90.47 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 90.44 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 90.43 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 90.39 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 90.36 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 90.29 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 90.22 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 90.18 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 90.1 | |
| 3lg3_A | 435 | Isocitrate lyase; conserved, CD, proteomics eviden | 89.76 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 89.69 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 89.66 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 89.65 |
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=359.83 Aligned_cols=288 Identities=26% Similarity=0.411 Sum_probs=251.5
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEP 227 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~ 227 (487)
++++++|||++++|.+|+.++.++|+++++|||++.+.+........+.+ ....+.|+++||.|++++.+.++|+++++
T Consensus 4 ~nri~~APM~~~t~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~g~~~~~~~~aa~~a~~ 82 (318)
T 1vhn_A 4 EVKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIFGSEPNELSEAARILSE 82 (318)
T ss_dssp -CEEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEECSCHHHHHHHHHHHTT
T ss_pred CCCEEECCCCCCCcHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999887766544444445 66678999999999999999999999987
Q ss_pred cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 228 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 228 ~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
++|+||||+|||..+.+++.+|+.++++++++.++++++++.+++||++|+|.|++..+..++++.++++|+|+|+||||
T Consensus 83 ~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~ 162 (318)
T 1vhn_A 83 KYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTR 162 (318)
T ss_dssp TCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESS
T ss_pred hCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCC
Confidence 79999999999998888888999999999999999999999999999999999988877779999999999999999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC------C---C
Q psy7343 308 TVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT------R---P 378 (487)
Q Consensus 308 t~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~------~---~ 378 (487)
+..+. +++.++|+.++++++ ++|||+||||+|++|+.++++.+|||+||+||+++.|||+|.+.. . +
T Consensus 163 ~~~~~--~~~~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~~~~g~~~~~ 238 (318)
T 1vhn_A 163 TVVQS--FTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEP 238 (318)
T ss_dssp CTTTT--TSSCCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCC
T ss_pred Ccccc--CCCCcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHHHHhCCCCCCC
Confidence 88664 778889999999888 999999999999999999997689999999999999999987541 1 2
Q ss_pred c----HHHHHHHHHHHHH-cCh--hHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy7343 379 A----WELASEYLDLVAQ-YPV--RLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443 (487)
Q Consensus 379 ~----~~~~~~~l~~~~~-~~~--~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~ 443 (487)
. .+.+++|++...+ ++. .+..+|+|+.+|++ ++++++++|++|.++++.+++.++++++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
T 1vhn_A 239 SREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTK---DLKGARRFREKVMKIEEVQILKEMFYNFIKE 307 (318)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHTT---TCTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHh---cCCChHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2 3466677776654 454 57789999887654 5789999999999999999999999998753
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=359.49 Aligned_cols=288 Identities=25% Similarity=0.442 Sum_probs=245.5
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAE 226 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~ 226 (487)
++++++|||+++||.+||.+++++|+ ++++|||++.+.++++.. .++++..+.+.|+++||+|++++.+.++|++++
T Consensus 3 ~nriv~APM~g~td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~--~~~~~~~~~~~p~~vQL~g~~p~~~~~aA~~a~ 80 (350)
T 3b0p_A 3 DPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNR--ERLLAFRPEEHPIALQLAGSDPKSLAEAARIGE 80 (350)
T ss_dssp CCSEEECCCTTTSSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCH--HHHHCCCGGGCSEEEEEECSCHHHHHHHHHHHH
T ss_pred CCCEEECCCCCCCHHHHHHHHHHcCCCCEEEeCCEEechhhcCCH--HHHhccCCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999986 999999999888876554 345555667889999999999999999999998
Q ss_pred Cc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc----cHHHHHHHHHHcCCcE
Q psy7343 227 PH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN----KTVEYARMLERAGCQL 301 (487)
Q Consensus 227 ~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~----~~~e~a~~le~~G~d~ 301 (487)
++ +|+||||+|||..+.+++.+|+.++++++++.++++++++.+++||++|+|++++.. +..++++.++++|+|+
T Consensus 81 ~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~ 160 (350)
T 3b0p_A 81 AFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKV 160 (350)
T ss_dssp HTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCE
T ss_pred HcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCE
Confidence 77 999999999999988899999999999999999999999999999999999987653 5788999999999999
Q ss_pred EEEEccccCCCCCCCC-------CCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccccc
Q psy7343 302 LAVHGRTVDQRGMNTG-------LASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 302 I~VhgRt~~~~g~~~g-------~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
|+||+|+..+. ++| +.+|+.++++++.+ ++|||+||||.|++|+.+++ + |||+||+||+++.|||+|.
T Consensus 161 I~V~~r~~~~g--~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l-~-GaD~V~iGRa~l~~P~l~~ 236 (350)
T 3b0p_A 161 FVVHARSALLA--LSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHL-K-RVDGVMLGRAVYEDPFVLE 236 (350)
T ss_dssp EEEECSCBC------------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH-T-TSSEEEECHHHHHCGGGGT
T ss_pred EEEecCchhcc--cCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHH-h-CCCEEEECHHHHhCcHHHH
Confidence 99999987542 443 35899999999999 99999999999999999999 4 8999999999999999998
Q ss_pred CCC--------CCc-HHHHHHHHHH---HHHcChhHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7343 374 GQT--------RPA-WELASEYLDL---VAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR 441 (487)
Q Consensus 374 ~~~--------~~~-~~~~~~~l~~---~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~ 441 (487)
++. .+. .+.++.++++ ...++..+..+|+|+.+|++ ++++++++|+.|.++++.+++.++++++.
T Consensus 237 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~kh~~~~~~---g~~~~~~~r~~l~~~~~~~~~~~~l~~~~ 313 (350)
T 3b0p_A 237 EADRRVFGLPRRPSRLEVARRMRAYLEEEVLKGTPPWAVLRHMLNLFR---GRPKGRLWRRLLSEGRSLQALDRALRLME 313 (350)
T ss_dssp THHHHTTCCSCCCCHHHHHHHHHHHHHHHHHHTCCHHHHHTTSTTTTT---TSTTHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHc---cCCCHHHHHHHHHCCCCHHHHHHHHHHHh
Confidence 652 122 3444444444 33456678899999977654 67899999999999999999999999987
Q ss_pred HHh
Q psy7343 442 ERF 444 (487)
Q Consensus 442 ~~~ 444 (487)
+..
T Consensus 314 ~~~ 316 (350)
T 3b0p_A 314 EEV 316 (350)
T ss_dssp HHH
T ss_pred hhc
Confidence 544
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-27 Score=238.05 Aligned_cols=263 Identities=16% Similarity=0.184 Sum_probs=186.0
Q ss_pred hhcCCCceEEecCCCCCC-----HH-------HHHHHHHcCCCeEEccceecc--cccc-------CcH--HHHHHhh--
Q psy7343 74 TQLGSPRFILAPMVDASE-----LP-------WRLLSRRYGSHLCYTPMVSAH--QFIA-------DKK--LRQEILM-- 128 (487)
Q Consensus 74 ~~~~~~~~~LAPMag~td-----~p-------FR~l~~~~Gadl~~TEMi~a~--~l~~-------~~~--~~~~~~~-- 128 (487)
.++ +|++++|||++++. .| |+..+ +.|+++++|||+... +... +.. ..++.+.
T Consensus 14 ~~l-~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA-~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~~~~~~ 91 (338)
T 1z41_A 14 MTL-KNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRA-IGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTEQ 91 (338)
T ss_dssp EEE-SSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHH-HTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHHHHH
T ss_pred EEE-cCccEECCcCCCcCCCCCCCCCHHHHHHHHHHH-cCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHHHHHHH
Confidence 445 78999999999874 35 44444 359999999998664 3221 122 1233332
Q ss_pred hCCCCCceeeeeccccCCCCCc-cccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCee
Q psy7343 129 STPEDRPLIIQRTIFPRLGSPR-FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207 (487)
Q Consensus 129 ~~~~e~p~~vQl~~~~~~g~~~-~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~ 207 (487)
.+..+.++++|+...+...... ..++| +..++. .+ ..+| .+| ..+...+
T Consensus 92 vh~~g~~i~~QL~h~Gr~~~~~~~~~~p----S~~~~~-----~~---~~~p----~~m--t~~eI~~------------ 141 (338)
T 1z41_A 92 VKEQGSKIGIQLAHAGRKAELEGDIFAP----SAIAFD-----EQ---SATP----VEM--SAEKVKE------------ 141 (338)
T ss_dssp HHHTTCEEEEEEECCGGGCCCSSCCEES----SSCCSS-----TT---SCCC----EEC--CHHHHHH------------
T ss_pred HHhcCCEEEEEecCCCcccCCCCCCcCC----CCCCCC-----CC---CCCC----ccC--CHHHHHH------------
Confidence 3456779999985443211110 01111 111000 00 0000 000 0000111
Q ss_pred eeeccCCHHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEE
Q psy7343 208 IQFCGNDSKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK 277 (487)
Q Consensus 208 Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vK 277 (487)
-.++|.++|+++.++ ||+||||++| |..+.+.+.||+.++++++++.+++++|++++++||.+|
T Consensus 142 ------~i~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vr 215 (338)
T 1z41_A 142 ------TVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVR 215 (338)
T ss_dssp ------HHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred ------HHHHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEE
Confidence 236788999888776 9999999997 888889999999999999999999999999999999999
Q ss_pred eec------ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC-CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 278 IRI------YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL-ASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 278 iR~------~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~-~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
++. +++.++..++++.+++.|+|+|.||+++........++ .+++.++++++.+++||+++|||.|+++++++
T Consensus 216 is~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~ 295 (338)
T 1z41_A 216 VSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEI 295 (338)
T ss_dssp EECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHH
T ss_pred ecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
Confidence 988 34566788999999999999999999865321111222 36799999999999999999999999999999
Q ss_pred HHhcCCcEEEeccccccCcccccC
Q psy7343 351 LAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
++..+||+|++||+++.||+++.+
T Consensus 296 l~~G~aD~V~iGR~~i~nPdl~~k 319 (338)
T 1z41_A 296 LQNGRADLIFIGRELLRDPFFART 319 (338)
T ss_dssp HHTTSCSEEEECHHHHHCTTHHHH
T ss_pred HHcCCceEEeecHHHHhCchHHHH
Confidence 965569999999999999999864
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=236.60 Aligned_cols=274 Identities=15% Similarity=0.126 Sum_probs=189.0
Q ss_pred hhcCCCceEEecCCCC-------CCHHHHHHHHHcCCCeEEccceecc--cccc-------CcH--HHHHHhh--hCCCC
Q psy7343 74 TQLGSPRFILAPMVDA-------SELPWRLLSRRYGSHLCYTPMVSAH--QFIA-------DKK--LRQEILM--STPED 133 (487)
Q Consensus 74 ~~~~~~~~~LAPMag~-------td~pFR~l~~~~Gadl~~TEMi~a~--~l~~-------~~~--~~~~~~~--~~~~e 133 (487)
.++ +|++++|||+++ |+..+|..+++.|+++++||++.+. +... +.+ ..++.+. .+..+
T Consensus 20 ~~l-~NRiv~aPm~~~~a~~g~pt~~~~~~y~~rA~~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G 98 (377)
T 2r14_A 20 LSL-PNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAKG 98 (377)
T ss_dssp EEE-SCSEEECCCCCCCCTTSCCCHHHHHHHHHTTTSSCEEEEEEESSGGGCCBTTCCBSSSHHHHHHHHHHHHHHHHTT
T ss_pred EEe-cCCeEECCCcCCcCCCCCCCHHHHHHHHHHhcCCEEEEcceeeccccccCCCCcccCCHHHHHHHHHHHHHHhhcC
Confidence 455 789999999988 9999999999999999999998775 3321 222 1344443 45567
Q ss_pred CceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcCh-hH-HH---HHHhcCCCCCC--e
Q psy7343 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-KL-RQ---EILMSTPEDRP--L 206 (487)
Q Consensus 134 ~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~-~~-~~---~~l~~~~~~~P--v 206 (487)
.++++||...+...... +. + .|. +.+..+++.... .. .. ..........| +
T Consensus 99 ~~i~~QL~H~Gr~~~~~-~~-~---------------~~~-----~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~m 156 (377)
T 2r14_A 99 GRIALQLWHVGRVSHEL-VQ-P---------------DGQ-----QPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRAL 156 (377)
T ss_dssp CCEEEEEECCTTSCCTT-TS-G---------------GGC-----CCEESSSCCCTTCEEEEECTTSCEEEEECCCCEEC
T ss_pred CeEEEEccCCccccccc-cc-c---------------CCC-----cccCCCcccccccccccccccccccccCCCCCccC
Confidence 89999985543211111 00 0 000 001111100000 00 00 00000000011 1
Q ss_pred eeeeccCCHHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC-cEE
Q psy7343 207 IIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV-PVS 275 (487)
Q Consensus 207 ~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i-PV~ 275 (487)
+..=-....++|+++|++++++ +|+||||++| |..+.+.+.||+.++++++++.+++++|+++++. ||.
T Consensus 157 t~~eI~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~ 236 (377)
T 2r14_A 157 ETDEIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVG 236 (377)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEE
Confidence 1100001246888999888776 9999999998 8889999999999999999999999999999853 999
Q ss_pred EEeeccc---------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 276 CKIRIYQ---------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 276 vKiR~~~---------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
+|++... +.++..++++.++++|+|+|.+|+|+..+. ..+ ..++.++++++.+++|||++||| ++++
T Consensus 237 vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~--~~~-~~~~~~~~ik~~~~iPvi~~Ggi-~~~~ 312 (377)
T 2r14_A 237 IRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGG--DIT-YPEGFREQMRQRFKGGLIYCGNY-DAGR 312 (377)
T ss_dssp EEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC--------C-CCTTHHHHHHHHCCSEEEEESSC-CHHH
T ss_pred EEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCC--CCc-chHHHHHHHHHHCCCCEEEECCC-CHHH
Confidence 9998742 234578889999999999999999875432 222 26788999999999999999999 6999
Q ss_pred HHHHHHhcCCcEEEeccccccCcccccC
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
+++++++.+||+|++||+++.||+++.+
T Consensus 313 a~~~l~~g~aD~V~igR~~l~~P~l~~k 340 (377)
T 2r14_A 313 AQARLDDNTADAVAFGRPFIANPDLPER 340 (377)
T ss_dssp HHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred HHHHHHCCCceEEeecHHHHhCchHHHH
Confidence 9999977779999999999999999864
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=228.78 Aligned_cols=276 Identities=13% Similarity=0.140 Sum_probs=189.0
Q ss_pred hhcCCCceEEecCCCC---------CCHHHHHHHHHcCCCeEEccceecc--cccc-------CcH--HHHHHhh--hCC
Q psy7343 74 TQLGSPRFILAPMVDA---------SELPWRLLSRRYGSHLCYTPMVSAH--QFIA-------DKK--LRQEILM--STP 131 (487)
Q Consensus 74 ~~~~~~~~~LAPMag~---------td~pFR~l~~~~Gadl~~TEMi~a~--~l~~-------~~~--~~~~~~~--~~~ 131 (487)
.++ +|++++|||+++ |+..+|..+++.|+++++|||+... +... +.+ ..++.+. .+.
T Consensus 14 ~~l-~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~vh~ 92 (364)
T 1vyr_A 14 VTA-PNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHA 92 (364)
T ss_dssp EEE-SSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHHHHHHH
T ss_pred EEE-CCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCCCCcccCCHHHHHHHHHHHHHHHh
Confidence 455 789999999987 6889999999999999999998765 3321 222 1344443 355
Q ss_pred CCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceeccccc-hhhhcChhHHHHHHhcCCCCCC--eee
Q psy7343 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSA-HQFIADKKLRQEILMSTPEDRP--LII 208 (487)
Q Consensus 132 ~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~-~~Ll~~~~~~~~~l~~~~~~~P--v~V 208 (487)
.+.++++||...+..... .+. + +....+.+++.-.. ..+..++.-. ........| ++.
T Consensus 93 ~g~~i~~QL~H~Gr~~~~-~~~-~--------------~g~~~~apS~i~~~~~~~~~~~~g~---~~~~~~~~p~~mt~ 153 (364)
T 1vyr_A 93 EDGRIAVQLWHTGRISHS-SIQ-P--------------GGQAPVSASALNANTRTSLRDENGN---AIRVDTTTPRALEL 153 (364)
T ss_dssp TTCCEEEEEECCTTSSCG-GGS-G--------------GGCCCEESSSCCCCSEEEEECTTSC---EEEEECCCCEECCG
T ss_pred cCCeEEEEeccCCcccCc-ccc-c--------------CCCccccCCCccccccccccccccc---ccccCCCCCCcCCH
Confidence 678999998544321111 100 0 00000011100000 0000000000 000000011 111
Q ss_pred eeccCCHHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEE
Q psy7343 209 QFCGNDSKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCK 277 (487)
Q Consensus 209 qi~g~d~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vK 277 (487)
.=-....++|.++|++++++ +|+||||++| |..+.+.+.||+.++++++++.+++++|+++++ .||.+|
T Consensus 154 ~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vr 233 (364)
T 1vyr_A 154 DEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIR 233 (364)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEE
Confidence 10011346888999888776 9999999997 878889999999999999999999999999984 399999
Q ss_pred eeccc----------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHH
Q psy7343 278 IRIYQ----------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADV 347 (487)
Q Consensus 278 iR~~~----------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da 347 (487)
++.+. +.++..++++.++++|+|+|.+|+|+..+. . ...++.++++++.+++||+++||| |++++
T Consensus 234 ls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~--~--~~~~~~~~~v~~~~~iPvi~~Ggi-t~~~a 308 (364)
T 1vyr_A 234 VSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGG--K--PYSEAFRQKVRERFHGVIIGAGAY-TAEKA 308 (364)
T ss_dssp ECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBC--C--CCCHHHHHHHHHHCCSEEEEESSC-CHHHH
T ss_pred EccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCC--C--cccHHHHHHHHHHCCCCEEEECCc-CHHHH
Confidence 98862 122467789999999999999998865432 1 125788999999999999999999 89999
Q ss_pred HHHHHhcCCcEEEeccccccCcccccC
Q psy7343 348 EACLAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
+++++..+||+|++||+++.||+++.+
T Consensus 309 ~~~l~~g~aD~V~~gR~~l~~P~~~~~ 335 (364)
T 1vyr_A 309 EDLIGKGLIDAVAFGRDYIANPDLVAR 335 (364)
T ss_dssp HHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred HHHHHCCCccEEEECHHHHhChhHHHH
Confidence 999976679999999999999999874
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=222.59 Aligned_cols=219 Identities=16% Similarity=0.182 Sum_probs=173.7
Q ss_pred CCccccccccCC-C-chHHHHHHHHhCCccceeccccchhhhcCh----------------------hHHHHHHhcC--C
Q psy7343 148 SPRFILAPMVDA-S-ELPWRLLSRRYGSHLCYTPMVSAHQFIADK----------------------KLRQEILMST--P 201 (487)
Q Consensus 148 ~~~~~lApma~~-t-d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~----------------------~~~~~~l~~~--~ 201 (487)
++|+++|+ +. + +..++..+...|++++.+++++......++ +...+.+... .
T Consensus 12 ~npv~~Aa--g~~~~~~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~~ 89 (311)
T 1jub_A 12 ANPFMNAS--GVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKE 89 (311)
T ss_dssp SSSEEECT--TSSCSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHHHHH
T ss_pred CCCcEECC--CCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHHHHHHHHHHh
Confidence 56888885 44 3 677888888899999988888754322111 1111222211 2
Q ss_pred C--CCCeeeeeccCCHHHHHHHHHhhCCc-Cc-EEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEE
Q psy7343 202 E--DRPLIIQFCGNDSKNLTEAAKLAEPH-CD-GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK 277 (487)
Q Consensus 202 ~--~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d-~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vK 277 (487)
. +.|+++|+.+.+++++.+++++++++ +| +||||++||.. ++ +..+..+++.+.++++++++.+++||++|
T Consensus 90 ~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~---~g--~~~~g~~~e~~~~iv~~vr~~~~~Pv~vK 164 (311)
T 1jub_A 90 NAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNV---PG--EPQLAYDFEATEKLLKEVFTFFTKPLGVK 164 (311)
T ss_dssp TCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS---SS--CCCGGGCHHHHHHHHHHHTTTCCSCEEEE
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC---CC--cccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 68999999999999999999999877 79 99999999985 22 34555689999999999999999999999
Q ss_pred eecccccccHHHHHHHHHHcCCcEEEEEcccc-----C------------CCCCCCCCC----CHHHHHHHHhhC--CCc
Q psy7343 278 IRIYQDVNKTVEYARMLERAGCQLLAVHGRTV-----D------------QRGMNTGLA----SWEHITAVRKAL--TIP 334 (487)
Q Consensus 278 iR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~-----~------------~~g~~~g~~----~~~~i~~i~~~~--~iP 334 (487)
++.+.+.++..++++.++++|+|+|.+|+++. . ..++++|.+ .++.++++++.+ ++|
T Consensus 165 i~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ip 244 (311)
T 1jub_A 165 LPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQ 244 (311)
T ss_dssp ECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSE
T ss_pred ECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCC
Confidence 98877666788889999999999999998861 1 112344544 378899999999 899
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEecccccc-CcccccC
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPALFTG 374 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~lf~~ 374 (487)
||++|||+|++|+.+++ ..|||+||+||+++. +|++|.+
T Consensus 245 vi~~GGI~~~~da~~~l-~~GAd~V~vg~~~l~~~p~~~~~ 284 (311)
T 1jub_A 245 IIGTGGIETGQDAFEHL-LCGATMLQIGTALHKEGPAIFDR 284 (311)
T ss_dssp EEEESSCCSHHHHHHHH-HHTCSEEEECHHHHHHCTHHHHH
T ss_pred EEEECCCCCHHHHHHHH-HcCCCEEEEchHHHhcCcHHHHH
Confidence 99999999999999999 689999999999996 9999873
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-25 Score=226.06 Aligned_cols=276 Identities=14% Similarity=0.144 Sum_probs=187.6
Q ss_pred hhcCCCceEEecCCCCC---------CHHHHHHHHHcCCCeEEccceecc--cccc-------CcHH--HHHHhh--hCC
Q psy7343 74 TQLGSPRFILAPMVDAS---------ELPWRLLSRRYGSHLCYTPMVSAH--QFIA-------DKKL--RQEILM--STP 131 (487)
Q Consensus 74 ~~~~~~~~~LAPMag~t---------d~pFR~l~~~~Gadl~~TEMi~a~--~l~~-------~~~~--~~~~~~--~~~ 131 (487)
.++ +|++++|||++++ +..+|..+++.|+++++|||+... +... +.+. .++.+. .+.
T Consensus 14 ~~l-~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~vh~ 92 (365)
T 2gou_A 14 LTL-KNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVTEAVHA 92 (365)
T ss_dssp EEE-SSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHHHHHHH
T ss_pred EEE-cCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEECceeecccccCCCCCCccCCHHHHHHHHHHHHHHHh
Confidence 455 7899999999985 789999999999999999998755 3322 2221 344443 355
Q ss_pred CCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCC-ccceecccc--chhhhcChhHHHHHHhcCCCCCCeee
Q psy7343 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVS--AHQFIADKKLRQEILMSTPEDRPLII 208 (487)
Q Consensus 132 ~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~--~~~Ll~~~~~~~~~l~~~~~~~Pv~V 208 (487)
.+.++++||...+..... .+. .|. .+.+++.-. +.....+..-... .......+.++.
T Consensus 93 ~g~~i~~QL~H~Gr~~~~-~~~-----------------~g~~~~apS~i~~~~~~~~~~~~~g~~~-~~~~~~p~~mt~ 153 (365)
T 2gou_A 93 KGCAIFAQLWHVGRVTHP-DNI-----------------DGQQPISSSTLKAENVKVFVDNGSDEPG-FVDVAVPRAMTK 153 (365)
T ss_dssp HSCEEEEEEECCTTSSCG-GGT-----------------TTCCCEESSSCCCTTCEEEECCSSSSCE-EEECCCCEECCH
T ss_pred cCCeEEEEeecCCCcccc-ccc-----------------CCCCccCCCCcccccccccccccccccc-ccCCCCCCcCCH
Confidence 677999998554321111 100 010 011110000 0000000000000 000000000110
Q ss_pred eeccCCHHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC-cEEEE
Q psy7343 209 QFCGNDSKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV-PVSCK 277 (487)
Q Consensus 209 qi~g~d~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i-PV~vK 277 (487)
.=-..-.++|+++|+++.++ +|+||||+|| |..+.+.+.||+.++++++++.+++++|+++++. ||.+|
T Consensus 154 ~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vr 233 (365)
T 2gou_A 154 ADIAQVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVR 233 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEE
Confidence 00001236888999888776 9999999998 8788899999999999999999999999999843 99999
Q ss_pred eeccc---------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHH
Q psy7343 278 IRIYQ---------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVE 348 (487)
Q Consensus 278 iR~~~---------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~ 348 (487)
++... +.++..++++.+++.|+|+|.+|+++..... + ..++.++++++.+++|||++||| |+++++
T Consensus 234 is~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~---~-~~~~~~~~i~~~~~iPvi~~Ggi-~~~~a~ 308 (365)
T 2gou_A 234 LAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAP---D-TPVSFKRALREAYQGVLIYAGRY-NAEKAE 308 (365)
T ss_dssp ECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCC---C-CCHHHHHHHHHHCCSEEEEESSC-CHHHHH
T ss_pred EccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCC---C-ccHHHHHHHHHHCCCcEEEeCCC-CHHHHH
Confidence 98732 2245778899999999999999988643211 1 24788999999999999999999 999999
Q ss_pred HHHHhcCCcEEEeccccccCcccccC
Q psy7343 349 ACLAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
++++..+||+|++||+++.||+++.+
T Consensus 309 ~~l~~g~aD~V~igR~~i~~P~l~~~ 334 (365)
T 2gou_A 309 QAINDGLADMIGFGRPFIANPDLPER 334 (365)
T ss_dssp HHHHTTSCSEEECCHHHHHCTTHHHH
T ss_pred HHHHCCCcceehhcHHHHhCchHHHH
Confidence 99976669999999999999999874
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=231.31 Aligned_cols=273 Identities=16% Similarity=0.133 Sum_probs=183.4
Q ss_pred hhcCCCceEEecCCCCC---CHH-------HHHHHHHcCCCeEEccceeccc--ccc-------CcH--HHHHHh--hhC
Q psy7343 74 TQLGSPRFILAPMVDAS---ELP-------WRLLSRRYGSHLCYTPMVSAHQ--FIA-------DKK--LRQEIL--MST 130 (487)
Q Consensus 74 ~~~~~~~~~LAPMag~t---d~p-------FR~l~~~~Gadl~~TEMi~a~~--l~~-------~~~--~~~~~~--~~~ 130 (487)
.++ +|++++|||++++ +.| ||+.++ |+++++||++.+.. ... +.+ ..++.+ ..+
T Consensus 25 ~~l-~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~--g~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh 101 (376)
T 1icp_A 25 FEL-CHRVVLAPLTRQRSYGYIPQPHAILHYSQRST--NGGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIVDAVH 101 (376)
T ss_dssp EEE-SCSEEECCCCCCCCGGGSCCHHHHHHHHHTCC--TTCEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHHHHHHHH
T ss_pred EEE-CCccEECCcCcCcCCCCCCCHHHHHHHHHhcC--CeeEEEECceeeccccccCcccCccCCHHHHHHHHHHHHHHH
Confidence 455 7899999999996 455 777776 79999999988753 221 222 134444 245
Q ss_pred CCCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCe--ee
Q psy7343 131 PEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL--II 208 (487)
Q Consensus 131 ~~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv--~V 208 (487)
..+.++++||...+...... +. + .|. +.+..+++-........-........|- +.
T Consensus 102 ~~G~~i~~QL~H~Gr~~~~~-~~-~---------------~~~-----~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~ 159 (376)
T 1icp_A 102 AKGGIFFCQIWHVGRVSNKD-FQ-P---------------NGE-----DPISCTDRGLTPQIMSNGIDIAHFTRPRRLTT 159 (376)
T ss_dssp HTTCEEEEEEECCTTSSCTT-TS-G---------------GGC-----CCEESSSCCCCCEECTTSSCEECCCCCEECCT
T ss_pred hcCCeEEEEeecCCCCcCcc-cc-c---------------CCC-----ceecCCCCCCccccccccccccCCCCCCcCCH
Confidence 56789999986543211110 00 0 010 0011111100000000000000000111 11
Q ss_pred eeccCCHHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC-cEEEE
Q psy7343 209 QFCGNDSKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV-PVSCK 277 (487)
Q Consensus 209 qi~g~d~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i-PV~vK 277 (487)
.=-....++|+++|++++++ ||+||||+|| |..+.+.+.||+.+.++.+++.+++++|+++++- ||.+|
T Consensus 160 ~eI~~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vr 239 (376)
T 1icp_A 160 DEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIR 239 (376)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEE
Confidence 00011246888999888776 9999999998 8888899999999999999999999999999853 99999
Q ss_pred eeccc---------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHH
Q psy7343 278 IRIYQ---------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVE 348 (487)
Q Consensus 278 iR~~~---------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~ 348 (487)
++... +.++..++++.++++|+|+|.+|+|+..+. ..+..+++.++++++.+++||+++|+| +.++++
T Consensus 240 ls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~--~~~~~~~~~~~~vr~~~~iPvi~~G~i-~~~~a~ 316 (376)
T 1icp_A 240 ISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTA--WEKIECTESLVPMRKAYKGTFIVAGGY-DREDGN 316 (376)
T ss_dssp ECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC--------CCCCSHHHHHHCCSCEEEESSC-CHHHHH
T ss_pred eccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCC--CCccccHHHHHHHHHHcCCCEEEeCCC-CHHHHH
Confidence 98642 122468899999999999999999875432 122235677889999999999999999 899999
Q ss_pred HHHHhcCCcEEEeccccccCcccccC
Q psy7343 349 ACLAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
+++++.+||+|++||+++.|||++.+
T Consensus 317 ~~l~~g~aD~V~~gR~~l~~P~l~~k 342 (376)
T 1icp_A 317 RALIEDRADLVAYGRLFISNPDLPKR 342 (376)
T ss_dssp HHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred HHHHCCCCcEEeecHHHHhCccHHHH
Confidence 99977779999999999999999874
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=231.12 Aligned_cols=274 Identities=16% Similarity=0.126 Sum_probs=185.3
Q ss_pred hhcCCCceEEecCCCCC---CHH-------HHHHHHHcCCCeEEccceecc--cccc-------CcHH--HHHHh--hhC
Q psy7343 74 TQLGSPRFILAPMVDAS---ELP-------WRLLSRRYGSHLCYTPMVSAH--QFIA-------DKKL--RQEIL--MST 130 (487)
Q Consensus 74 ~~~~~~~~~LAPMag~t---d~p-------FR~l~~~~Gadl~~TEMi~a~--~l~~-------~~~~--~~~~~--~~~ 130 (487)
.++ +|++++|||.+++ +.| ||..++ |+++++||++.+. +... +.+. .++.+ ..+
T Consensus 27 ~~L-~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~--G~GLIitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh 103 (402)
T 2hsa_B 27 FNL-SHRVVLAPMTRCRALNNIPQAALGEYYEQRAT--AGGFLITEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVH 103 (402)
T ss_dssp EEE-SCSEEECCCCCCCSGGGCCCHHHHHHHHHHCC--TTCEEECCCEESSTTCCCSTTCCBCSSHHHHHHHHHHHHHHH
T ss_pred EEe-cCCeEECCCCCCcCCCCCCCHHHHHHHHHHhc--cCCEEEecceeeccccccCCCCcccCCHHHHHHHHHHHHHHH
Confidence 456 8899999999997 566 555554 6999999998875 3221 2221 24344 235
Q ss_pred CCCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChh---HHHHHHhcCCCCCC--
Q psy7343 131 PEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK---LRQEILMSTPEDRP-- 205 (487)
Q Consensus 131 ~~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~---~~~~~l~~~~~~~P-- 205 (487)
..+.++++||...+..... .+. | .|. +.+..+++..... ....- .......|
T Consensus 104 ~~G~~i~~QL~H~Gr~~~~-~~~-~---------------~g~-----~~~apS~v~~~~~~~~~~~~g-~~~~~~~p~~ 160 (402)
T 2hsa_B 104 AKGAVIFCQLWHVGRASHE-VYQ-P---------------AGA-----APISSTEKPISNRWRILMPDG-THGIYPKPRA 160 (402)
T ss_dssp HTTCEEEEEEECCTTSCCG-GGC-T---------------TCC-----CCEESCSCCCCTTCEEECTTS-CEEECCCCEE
T ss_pred hcCCeEEEEeccCCccccc-ccc-c---------------CCC-----ccccCCCcccccccccccccc-cccCCCCCcc
Confidence 5678999998554321111 100 0 010 0011111000000 00000 00000011
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhcc-CcE
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPV 274 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV 274 (487)
++..=-....++|+++|++++++ ||+||||+|| |..+.+.+.||+.++++++++.|++++|+++++ .||
T Consensus 161 mt~~eI~~ii~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V 240 (402)
T 2hsa_B 161 IGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRV 240 (402)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcE
Confidence 11100001246888999988776 9999999997 988999999999999999999999999999985 599
Q ss_pred EEEeeccc---------ccccHHHHHHHHHHcC------CcEEEEEccccCCCC--C--C-C-CCCCHHHHHHHHhhCCC
Q psy7343 275 SCKIRIYQ---------DVNKTVEYARMLERAG------CQLLAVHGRTVDQRG--M--N-T-GLASWEHITAVRKALTI 333 (487)
Q Consensus 275 ~vKiR~~~---------d~~~~~e~a~~le~~G------~d~I~VhgRt~~~~g--~--~-~-g~~~~~~i~~i~~~~~i 333 (487)
.+|++... +.++..++++.++++| +|+|.||+++..+.. . + . +...++.++++++.+++
T Consensus 241 ~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~i 320 (402)
T 2hsa_B 241 GVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQG 320 (402)
T ss_dssp EEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSS
T ss_pred EEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCC
Confidence 99998752 1235788999999999 999999998754310 0 0 0 11257889999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccC
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
|||++||| |++++++++++.+||+|++||+++.||+++.+
T Consensus 321 Pvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k 360 (402)
T 2hsa_B 321 TFICSGGY-TRELGIEAVAQGDADLVSYGRLFISNPDLVMR 360 (402)
T ss_dssp CEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred CEEEeCCC-CHHHHHHHHHCCCCceeeecHHHHhCchHHHH
Confidence 99999999 99999999977779999999999999999874
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=217.16 Aligned_cols=221 Identities=15% Similarity=0.168 Sum_probs=172.8
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhh--------------------hcCh--hHHHHHHhc--CCCC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF--------------------IADK--KLRQEILMS--TPED 203 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~L--------------------l~~~--~~~~~~l~~--~~~~ 203 (487)
++|+++|++.-..+..+...+.+.|++++.+++++.... +.++ +...+.+.. ...+
T Consensus 14 ~nPi~~Aag~~~~~~~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~~~~ 93 (314)
T 2e6f_A 14 ANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHDYSK 93 (314)
T ss_dssp SSSEEECTTSSCSSHHHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHTCCTTT
T ss_pred CCCcEECCCCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHHHHHHHhhcCC
Confidence 568888865411355666667888999888888774431 1222 111122332 2247
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-Cc---EEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CD---GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d---~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
.|+++|+.+.+++++.+++++++++ +| +||||++||.. ++ +..+..+++.+.++++++++.+++||++|++
T Consensus 94 ~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~---~g--~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~ 168 (314)
T 2e6f_A 94 KPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV---PG--KPQVAYDFEAMRTYLQQVSLAYGLPFGVKMP 168 (314)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS---TT--CCCGGGSHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC---CC--chhhcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 8999999999999999999999887 79 99999999985 22 3445568999999999999999999999998
Q ss_pred cccccccHHHHHHHHHHcC-CcEEEEEcccc-----C------------CCCCCCCCC----CHHHHHHHHhhC-CCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAG-CQLLAVHGRTV-----D------------QRGMNTGLA----SWEHITAVRKAL-TIPVI 336 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G-~d~I~VhgRt~-----~------------~~g~~~g~~----~~~~i~~i~~~~-~iPVi 336 (487)
.+.+.++..++++.++++| +|+|.+|+++. . ..++++|.+ .++.++++++.+ ++|||
T Consensus 169 ~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi 248 (314)
T 2e6f_A 169 PYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVF 248 (314)
T ss_dssp CCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEE
Confidence 8777667888899999999 99999998771 0 112344543 378999999999 99999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEecccccc-CcccccC
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPALFTG 374 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~lf~~ 374 (487)
++|||+|++|+.+++ ..|||+||+||+++. +|++|.+
T Consensus 249 ~~GGI~~~~da~~~l-~~GAd~V~ig~~~l~~~p~~~~~ 286 (314)
T 2e6f_A 249 GCGGVYSGEDAFLHI-LAGASMVQVGTALQEEGPGIFTR 286 (314)
T ss_dssp EESSCCSHHHHHHHH-HHTCSSEEECHHHHHHCTTHHHH
T ss_pred EECCCCCHHHHHHHH-HcCCCEEEEchhhHhcCcHHHHH
Confidence 999999999999999 689999999999996 9999873
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=214.72 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=137.8
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~--- 281 (487)
.++|.++|++++++ ||+||||++| |..+.+.+.||+.++++.+++.+++++|++++++||.+|++..
T Consensus 143 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~ 222 (340)
T 3gr7_A 143 VQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYH 222 (340)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 36789999988877 9999999996 9889999999999999999999999999999999999999874
Q ss_pred ---cccccHHHHHHHHHHcCCcEEEEEc-cccCCCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 282 ---QDVNKTVEYARMLERAGCQLLAVHG-RTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 282 ---~d~~~~~e~a~~le~~G~d~I~Vhg-Rt~~~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
++.++..++++.+++.|+|+|.||. ++..+. ...+ ..+++.++++++.+++||+++|||+|+++++++++..+|
T Consensus 223 ~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~-~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~a 301 (340)
T 3gr7_A 223 PDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPAR-MNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRA 301 (340)
T ss_dssp TTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCC-CCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCC-CCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCe
Confidence 4567899999999999999999984 433221 1112 236899999999999999999999999999999965559
Q ss_pred cEEEeccccccCcccccC
Q psy7343 357 AGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 357 d~VmiGRa~l~~P~lf~~ 374 (487)
|+|++||+++.||+++.+
T Consensus 302 D~V~iGR~~lanPdl~~k 319 (340)
T 3gr7_A 302 DLVFLGRELLRNPYWPYA 319 (340)
T ss_dssp SEEEECHHHHHCTTHHHH
T ss_pred eEEEecHHHHhCchHHHH
Confidence 999999999999999864
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=219.84 Aligned_cols=185 Identities=18% Similarity=0.213 Sum_probs=151.0
Q ss_pred CCCeeeeeccC-----CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh-------c
Q psy7343 203 DRPLIIQFCGN-----DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-------V 270 (487)
Q Consensus 203 ~~Pv~Vqi~g~-----d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-------~ 270 (487)
+.|+++||.++ +++++.++++.+.+.+|+||||+|||+. +| ..++.+++.+.++++++++. .
T Consensus 146 ~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~---~G---~~~l~~~~~l~~ll~av~~~~~~~~~~~ 219 (367)
T 3zwt_A 146 GLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNT---AG---LRSLQGKAELRRLLTKVLQERDGLRRVH 219 (367)
T ss_dssp TCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTS---TT---GGGGGSHHHHHHHHHHHHHHHHTSCGGG
T ss_pred CceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCC---CC---ccccCCHHHHHHHHHHHHHHHhhccccC
Confidence 57999999985 6789999999998889999999999975 22 22457899999999999764 6
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC-----------CCCCCCCCCC----HHHHHHHHhhC--CC
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD-----------QRGMNTGLAS----WEHITAVRKAL--TI 333 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~-----------~~g~~~g~~~----~~~i~~i~~~~--~i 333 (487)
++||++|+|.+.+.++..++++.++++|+|+|++|+++.. ..++++|.+. ++.++++++.+ ++
T Consensus 220 ~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~i 299 (367)
T 3zwt_A 220 RPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRV 299 (367)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCS
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCc
Confidence 8999999998877778999999999999999999998742 2345777665 48899999999 89
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc-cCcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHH
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNL-YNPALFTGQTRPAWELASEYLDLVAQYP-VRLQYAR 401 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l-~~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r 401 (487)
|||++|||.|.+|+.+++ ..|||+||+||+++ .+|++|.+ +.++..+++++.+ ..+.+++
T Consensus 300 pvI~~GGI~s~~da~~~l-~~GAd~V~vgra~l~~gP~~~~~-------i~~~l~~~m~~~G~~~i~e~~ 361 (367)
T 3zwt_A 300 PIIGVGGVSSGQDALEKI-RAGASLVQLYTALTFWGPPVVGK-------VKRELEALLKEQGFGGVTDAI 361 (367)
T ss_dssp CEEEESSCCSHHHHHHHH-HHTCSEEEESHHHHHHCTHHHHH-------HHHHHHHHHHHTTCSSHHHHT
T ss_pred eEEEECCCCCHHHHHHHH-HcCCCEEEECHHHHhcCcHHHHH-------HHHHHHHHHHHcCCCCHHHhh
Confidence 999999999999999999 58999999999995 57999873 3444445555554 2344444
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-24 Score=216.21 Aligned_cols=165 Identities=18% Similarity=0.295 Sum_probs=139.3
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhhCCc-C-cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPH-C-DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~-d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi 278 (487)
..+.|+++||.|.+++++.+++++++++ + |+||||++||+.. | +..+..+++.+.++++++++.+++||++|+
T Consensus 126 ~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~---G--~~~l~~~~e~l~~il~av~~~~~~PV~vKi 200 (345)
T 3oix_A 126 PDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVP---G--XPQIAYDFETTDQILSEVFTYFTKPLGIKL 200 (345)
T ss_dssp TTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST---T--CCCGGGCHHHHHHHHHHHTTTCCSCEEEEE
T ss_pred cCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC---C--chhhcCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 4578999999999999999999999754 4 5999999999752 3 466778999999999999999999999999
Q ss_pred ecccccccHHHHHHHHHHcCCcEEE-------------EEcccc-----CCCCCCCCCCC----HHHHHHHHhhC--CCc
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLA-------------VHGRTV-----DQRGMNTGLAS----WEHITAVRKAL--TIP 334 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~-------------VhgRt~-----~~~g~~~g~~~----~~~i~~i~~~~--~iP 334 (487)
|.+. +..++++.++++|+++|. ||.|+. ...++++|++. |+.++++++.+ ++|
T Consensus 201 ~p~~---~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ip 277 (345)
T 3oix_A 201 PPYF---DIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQ 277 (345)
T ss_dssp CCCC---CHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSE
T ss_pred CCCC---CHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCc
Confidence 8763 567888888888776553 555543 23456788776 58899999999 799
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccc-cccCcccccC
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEG-NLYNPALFTG 374 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa-~l~~P~lf~~ 374 (487)
||++|||.|.+|+.+++ ..|||+||+||+ ++.+|++|.+
T Consensus 278 IIg~GGI~s~~da~~~l-~aGAd~V~igra~~~~gP~~~~~ 317 (345)
T 3oix_A 278 IIGTGGVXTGRDAFEHI-LCGASMVQIGTALHQEGPQIFKR 317 (345)
T ss_dssp EEEESSCCSHHHHHHHH-HHTCSEEEESHHHHHHCTHHHHH
T ss_pred EEEECCCCChHHHHHHH-HhCCCEEEEChHHHhcChHHHHH
Confidence 99999999999999999 689999999999 8999999873
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=221.72 Aligned_cols=167 Identities=16% Similarity=0.235 Sum_probs=143.8
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhC---Cc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEE
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAE---PH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK 277 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~---~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vK 277 (487)
.+.|+++||.|.+++++.+++++++ +. +|+||||+|||+. ++ |..+..+++.+.++++++++.+++||++|
T Consensus 125 ~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~---~g--g~~l~~~~e~~~~il~av~~~~~~PV~vK 199 (354)
T 4ef8_A 125 GKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNV---PG--KPQVAYDFDAMRQCLTAVSEVYPHSFGVK 199 (354)
T ss_dssp TTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCS---TT--SCCGGGSHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCC---CC--chhhccCHHHHHHHHHHHHHhhCCCeEEE
Confidence 3689999999999999999999988 33 8999999999975 23 56677899999999999999999999999
Q ss_pred eecccccccHHHHHHHHHHcC-CcEEEEEc------------ccc-----CCCCCCCCCC----CHHHHHHHHhhC-CCc
Q psy7343 278 IRIYQDVNKTVEYARMLERAG-CQLLAVHG------------RTV-----DQRGMNTGLA----SWEHITAVRKAL-TIP 334 (487)
Q Consensus 278 iR~~~d~~~~~e~a~~le~~G-~d~I~Vhg------------Rt~-----~~~g~~~g~~----~~~~i~~i~~~~-~iP 334 (487)
+|.+.|..+..++++.++++| +|+|++++ |+. ...++++|++ .|+.++++++.. ++|
T Consensus 200 i~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ip 279 (354)
T 4ef8_A 200 MPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKL 279 (354)
T ss_dssp ECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSE
T ss_pred ecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCC
Confidence 999888777888888899998 99998643 331 2334577754 589999999987 799
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccC
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTG 374 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~ 374 (487)
||++|||.|.+|+.+++ ..|||+||+||+++.| |++|.+
T Consensus 280 II~~GGI~s~~da~~~l-~aGAd~V~vgra~l~~GP~~~~~ 319 (354)
T 4ef8_A 280 IFGCGGVYTGEDAFLHV-LAGASMVQVGTALQEEGPSIFER 319 (354)
T ss_dssp EEEESCCCSHHHHHHHH-HHTEEEEEECHHHHHHCTTHHHH
T ss_pred EEEECCcCCHHHHHHHH-HcCCCEEEEhHHHHHhCHHHHHH
Confidence 99999999999999999 6899999999999999 999873
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=230.65 Aligned_cols=264 Identities=16% Similarity=0.167 Sum_probs=185.2
Q ss_pred hhcCCCceEEecCCC-CCC--HHHHHHHHHc------CCCeEEccceecc--cccc-------CcH--HHHHHhh--hCC
Q psy7343 74 TQLGSPRFILAPMVD-ASE--LPWRLLSRRY------GSHLCYTPMVSAH--QFIA-------DKK--LRQEILM--STP 131 (487)
Q Consensus 74 ~~~~~~~~~LAPMag-~td--~pFR~l~~~~------Gadl~~TEMi~a~--~l~~-------~~~--~~~~~~~--~~~ 131 (487)
.++ +|++++|||++ .++ .+++.++..| |+++++|||++.. +... +.. ..++.+. .+.
T Consensus 14 ~~l-~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~ 92 (671)
T 1ps9_A 14 TTL-KNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQ 92 (671)
T ss_dssp CEE-SSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHHHHHHH
T ss_pred EEE-cCceEECCccCCcCCCCCCcHHHHHHHHHHhcCCCCEEEecccccCccccCCCCCCccCCHHHHHHHHHHHHHHHh
Confidence 455 78999999998 555 3466665544 8999999998755 3221 111 1333332 345
Q ss_pred CCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec
Q psy7343 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211 (487)
Q Consensus 132 ~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~ 211 (487)
.+.++++|+...+.....+..++|-+ .++. .+ ...+.+| ..+...+
T Consensus 93 ~g~~i~~Ql~h~Gr~~~~~~~~~ps~----~~~~-----~~-~~~p~~~--------t~~ei~~---------------- 138 (671)
T 1ps9_A 93 EGGKIALQILHTGRYSYQPHLVAPSA----LQAP-----IN-RFVPHEL--------SHEEILQ---------------- 138 (671)
T ss_dssp TTCCEEEEECCCGGGSBSTTCEESSS----CCCT-----TC-SSCCEEC--------CHHHHHH----------------
T ss_pred cCCEEEEEeccCCcccCCCCCcCCCC----cccc-----cC-CCCCccC--------CHHHHHH----------------
Confidence 67799999854432111111112111 0000 00 0000000 0000111
Q ss_pred cCCHHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 212 GNDSKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
-.++|.++|++++++ ||+||||+|| |..+.+.+.||+.+.++++++.++++++++++ ++||++|++
T Consensus 139 --~i~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls 216 (671)
T 1ps9_A 139 --LIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLS 216 (671)
T ss_dssp --HHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEE
T ss_pred --HHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEC
Confidence 236788899888776 9999999998 88889999999999999999999999999998 789999998
Q ss_pred c------ccccccHHHHHHHHHHcCCcEEEEEccccCCCC----CCCCCC-CHHHHHHHHhhCCCcEEEcCCCCCHHHHH
Q psy7343 280 I------YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG----MNTGLA-SWEHITAVRKALTIPVIANGNIQCLADVE 348 (487)
Q Consensus 280 ~------~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g----~~~g~~-~~~~i~~i~~~~~iPVi~nGgI~s~~da~ 348 (487)
. +++.++..++++.++++|+|+|.+|+++.+... .+.+.. .++.++++++.+++||+++|+|.|+++++
T Consensus 217 ~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~ 296 (671)
T 1ps9_A 217 MLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVAD 296 (671)
T ss_dssp EECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHH
Confidence 6 334557889999999999999999987654221 122222 35889999999999999999999999999
Q ss_pred HHHHhcCCcEEEeccccccCcccccC
Q psy7343 349 ACLAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
+++++.+||+|++||+++.||+++.+
T Consensus 297 ~~l~~g~aD~V~~gR~~l~~P~l~~k 322 (671)
T 1ps9_A 297 DILSRGDADMVSMARPFLADAELLSK 322 (671)
T ss_dssp HHHHTTSCSEEEESTHHHHCTTHHHH
T ss_pred HHHHcCCCCEEEeCHHHHhCcHHHHH
Confidence 99976669999999999999999864
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.7e-24 Score=215.13 Aligned_cols=218 Identities=19% Similarity=0.162 Sum_probs=166.9
Q ss_pred CCccccccccCCCchH-HHHHHHHhCCccceeccccchhh-----------------h-----cCh--hHHHHHHhcCCC
Q psy7343 148 SPRFILAPMVDASELP-WRLLSRRYGSHLCYTPMVSAHQF-----------------I-----ADK--KLRQEILMSTPE 202 (487)
Q Consensus 148 ~~~~~lApma~~td~~-fr~i~~~~Ga~l~~t~~v~~~~L-----------------l-----~~~--~~~~~~l~~~~~ 202 (487)
++|+++|+ +.++.+ +...+.+.|++++.+++++.... + .++ +...+.+.....
T Consensus 55 ~npi~~aa--g~~~~~~~~~~~a~~G~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g~~~~g~~~~~~~~~~~~~ 132 (336)
T 1f76_A 55 KNPLGLAA--GLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKAHY 132 (336)
T ss_dssp SSSEEECT--TSSTTCCCHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHHHHHHHHHCCC
T ss_pred CCCcEeCc--ccCCcHHHHHHHHHcCccEEEeCCCCCCCCCCCCCcceeeccccceeeecCCCCCcCHHHHHHHHHhccc
Confidence 56888885 344333 66667788998887777763311 1 111 122233333333
Q ss_pred CCCeeeeeccCC-------HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-----
Q psy7343 203 DRPLIIQFCGND-------SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV----- 270 (487)
Q Consensus 203 ~~Pv~Vqi~g~d-------~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~----- 270 (487)
+.|+++|+.+++ .+++.++++++++.+|+|+||++||..+ | .....+++.+.++++++++.+
T Consensus 133 ~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~~~---g---~~~~~~~~~~~~il~~vr~~~~~~~~ 206 (336)
T 1f76_A 133 DGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTP---G---LRTLQYGEALDDLLTAIKNKQNDLQA 206 (336)
T ss_dssp CSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSST---T---GGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEccCCCCC---C---cccccCHHHHHHHHHHHHHHHHhhhh
Confidence 569999999876 8899999998877799999999999742 2 223457999999999999988
Q ss_pred ----cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC-----------CCCCCCCCCC----HHHHHHHHhhC
Q psy7343 271 ----QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD-----------QRGMNTGLAS----WEHITAVRKAL 331 (487)
Q Consensus 271 ----~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~-----------~~g~~~g~~~----~~~i~~i~~~~ 331 (487)
++||++|++.+.+.++..++++.++++|+|+|.+|+++.. ..++++|.+. ++.++++++.+
T Consensus 207 ~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~ 286 (336)
T 1f76_A 207 MHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLEL 286 (336)
T ss_dssp HHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHH
T ss_pred cccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHh
Confidence 8999999987766667899999999999999999987632 1223455433 47888999988
Q ss_pred --CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc-CcccccC
Q psy7343 332 --TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPALFTG 374 (487)
Q Consensus 332 --~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~lf~~ 374 (487)
++|||++|||+|++|+.+++ ..|||+||+||+++. ||++|.+
T Consensus 287 ~~~ipVi~~GGI~~~~da~~~l-~~GAd~V~igr~~l~~~P~~~~~ 331 (336)
T 1f76_A 287 NGRLPIIGVGGIDSVIAAREKI-AAGASLVQIYSGFIFKGPPLIKE 331 (336)
T ss_dssp TTSSCEEEESSCCSHHHHHHHH-HHTCSEEEESHHHHHHCHHHHHH
T ss_pred CCCCCEEEECCCCCHHHHHHHH-HCCCCEEEeeHHHHhcCcHHHHH
Confidence 89999999999999999999 589999999999998 9999874
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=214.69 Aligned_cols=178 Identities=19% Similarity=0.194 Sum_probs=146.3
Q ss_pred CCCeeeeeccCC-----HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-------
Q psy7343 203 DRPLIIQFCGND-----SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV------- 270 (487)
Q Consensus 203 ~~Pv~Vqi~g~d-----~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~------- 270 (487)
..|+++||.+++ .+++.++++.+.+.+|+||||++||+. . |..++.+++.+.++++++++..
T Consensus 181 ~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~ad~ieiNiScPNt---~---Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~ 254 (415)
T 3i65_A 181 KHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNT---P---GLRDNQEAGKLKNIILSVKEEIDNLEKNN 254 (415)
T ss_dssp TCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCCC--------------CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEeccccCccccHHHHHHHHHHHHhhCCEEEEECCCCCC---C---CcccccCHHHHHHHHHHHHHHHHhhcccc
Confidence 457999999876 789999999999889999999999975 1 4456689999999999998762
Q ss_pred -------------cCc-EEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC---------CCCCCCCCCCH----HH
Q psy7343 271 -------------QVP-VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD---------QRGMNTGLASW----EH 323 (487)
Q Consensus 271 -------------~iP-V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~---------~~g~~~g~~~~----~~ 323 (487)
++| |++|++.+++.++..++++.++++|+|+|++|+++.. +.++++|.+.+ +.
T Consensus 255 ~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~ 334 (415)
T 3i65_A 255 IMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKF 334 (415)
T ss_dssp CSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHH
T ss_pred cccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHH
Confidence 689 9999999877778999999999999999999998863 24567887776 78
Q ss_pred HHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 324 ITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 324 i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
++++++.+ ++|||++|||.|.+|+.+++ ..|||+|||||+++.+ |++|.+ +.++..+++++.+
T Consensus 335 I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l-~aGAd~VqIgra~l~~GP~~~~~-------i~~~L~~~l~~~G 400 (415)
T 3i65_A 335 ICEMYNYTNKQIPIIASGGIFSGLDALEKI-EAGASVCQLYSCLVFNGMKSAVQ-------IKRELNHLLYQRG 400 (415)
T ss_dssp HHHHHHHTTTCSCEEECSSCCSHHHHHHHH-HHTEEEEEESHHHHHHGGGHHHH-------HHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHH-HcCCCEEEEcHHHHhcCHHHHHH-------HHHHHHHHHHHcC
Confidence 99999998 79999999999999999999 5899999999999988 999873 3444445555543
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-23 Score=228.47 Aligned_cols=160 Identities=11% Similarity=0.123 Sum_probs=136.4
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~- 281 (487)
.++|.++|++++++ ||+||||++| |..+.+.+.||+.+.++++++.|++++|++++ ++||++|++..
T Consensus 148 i~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~ 227 (729)
T 1o94_A 148 QQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDT 227 (729)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEcccc
Confidence 46889999988877 9999999999 88899999999999999999999999999999 78999999862
Q ss_pred ------cc-cccHHHHHHHHHHcCCcEEEEEccccC------CCCCCCCCC-CHHHHHHHHhhCCCcEEEcCCCCCHHHH
Q psy7343 282 ------QD-VNKTVEYARMLERAGCQLLAVHGRTVD------QRGMNTGLA-SWEHITAVRKALTIPVIANGNIQCLADV 347 (487)
Q Consensus 282 ------~d-~~~~~e~a~~le~~G~d~I~VhgRt~~------~~g~~~g~~-~~~~i~~i~~~~~iPVi~nGgI~s~~da 347 (487)
++ .++..++++.+++ |+|.+.+|+++.. ....+.+.. +++.++++++.+++|||++|+|.|++++
T Consensus 228 ~~~~~G~~~~~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a 306 (729)
T 1o94_A 228 VYGPGQIEAEVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKM 306 (729)
T ss_dssp SSCTTSCCTTTHHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHHHH
T ss_pred CcCCCCCCchHHHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHHHH
Confidence 33 4577889999988 7999999887511 111122333 5788999999999999999999999999
Q ss_pred HHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 348 EACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
++++++.+||+|++||++++||+++.+.
T Consensus 307 ~~~l~~g~aD~V~~gR~~l~~P~~~~~~ 334 (729)
T 1o94_A 307 IEIVTKGYADIIGCARPSIADPFLPQKV 334 (729)
T ss_dssp HHHHHTTSCSBEEESHHHHHCTTHHHHH
T ss_pred HHHHHCCCCCEEEeCchhhcCchHHHHH
Confidence 9999777799999999999999998643
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-23 Score=207.79 Aligned_cols=161 Identities=20% Similarity=0.221 Sum_probs=137.6
Q ss_pred HHHHHHHHHhhCCc-CcEEEee---------cCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDIN---------IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN---------~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~- 281 (487)
.++|.++|++++++ ||+|||| +.||..+.+.+.||+.+.++.+++.|++++|++++ ++||.+|++..
T Consensus 142 i~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~ 221 (343)
T 3kru_A 142 VKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADD 221 (343)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCC
T ss_pred HHHHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechh
Confidence 36789999988877 9999999 56899999999999999999999999999999999 68999999873
Q ss_pred -----cccccHHHHHHHHHHcCCcEEEE-EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 282 -----QDVNKTVEYARMLERAGCQLLAV-HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 282 -----~d~~~~~e~a~~le~~G~d~I~V-hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
++.++..++++.++++ +|+|.+ +|++..+........+++.++++++.+++||+++|+|+|++++++++++.+
T Consensus 222 ~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~ 300 (343)
T 3kru_A 222 YMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNER 300 (343)
T ss_dssp SSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTS
T ss_pred hhccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchh
Confidence 2356788999999999 999999 576544221111224689999999999999999999999999999997666
Q ss_pred CcEEEeccccccCcccccCCC
Q psy7343 356 VAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 356 ad~VmiGRa~l~~P~lf~~~~ 376 (487)
||+|++||+++.||+++.+..
T Consensus 301 aD~V~iGR~~lanPdl~~k~~ 321 (343)
T 3kru_A 301 ADLVALGRELLRNPYWVLHTY 321 (343)
T ss_dssp CSEEEESHHHHHCTTHHHHTC
T ss_pred hHHHHHHHHHhcCCeEEEEEe
Confidence 999999999999999998664
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=206.52 Aligned_cols=160 Identities=20% Similarity=0.242 Sum_probs=137.1
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeec--
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRI-- 280 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~-- 280 (487)
.++|.++|+++.++ ||+||||++| |..+.+.+.||+.+.++.+++.+++++|++++ ++||.+|++.
T Consensus 151 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~ 230 (349)
T 3hgj_A 151 LQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATD 230 (349)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEecccc
Confidence 46788999988777 9999999999 99999999999999999999999999999999 7899999987
Q ss_pred ----ccccccHHHHHHHHHHcCCcEEEEE-ccccCCCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 281 ----YQDVNKTVEYARMLERAGCQLLAVH-GRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 281 ----~~d~~~~~e~a~~le~~G~d~I~Vh-gRt~~~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
+++.++..++++.+++.|+|+|.+| |++........+ ..+++.++++++.+++||+++|+|.|+++++++++..
T Consensus 231 ~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G 310 (349)
T 3hgj_A 231 WGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAG 310 (349)
T ss_dssp CSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCC
Confidence 3456678999999999999999998 454322111112 2467899999999999999999999999999999655
Q ss_pred CCcEEEeccccccCcccccC
Q psy7343 355 GVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~lf~~ 374 (487)
.||+|++||+++.||+++.+
T Consensus 311 ~aD~V~iGR~~lanPdl~~k 330 (349)
T 3hgj_A 311 SADLVLLGRVLLRDPYFPLR 330 (349)
T ss_dssp SCSEEEESTHHHHCTTHHHH
T ss_pred CceEEEecHHHHhCchHHHH
Confidence 59999999999999999763
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=202.03 Aligned_cols=164 Identities=24% Similarity=0.387 Sum_probs=137.6
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCC-c-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEP-H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~-~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
+.|+.+|+++.+++++.++++++++ . +|+||||++||..+ ++ |..+..+++.+.++++++++.+++||++|++.
T Consensus 98 ~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~--~g--~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~ 173 (311)
T 1ep3_A 98 ELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK--HG--GQAFGTDPEVAAALVKACKAVSKVPLYVKLSP 173 (311)
T ss_dssp TSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGG--GT--TEEGGGCHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred CCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCC--Cc--hhhhcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 7899999999999999999999986 4 99999999998742 22 33444689999999999999989999999975
Q ss_pred ccccccHHHHHHHHHHcCCcEEEE---------EccccCC-----CCCCCCCCC----HHHHHHHHhhCCCcEEEcCCCC
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAV---------HGRTVDQ-----RGMNTGLAS----WEHITAVRKALTIPVIANGNIQ 342 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~V---------hgRt~~~-----~g~~~g~~~----~~~i~~i~~~~~iPVi~nGgI~ 342 (487)
+ ..+..++++.++++|+|+|.+ |+|++.. .++++|.+. ++.++++++.+++|||++|||.
T Consensus 174 ~--~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~ 251 (311)
T 1ep3_A 174 N--VTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVA 251 (311)
T ss_dssp C--SSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCC
T ss_pred C--hHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcC
Confidence 4 346788999999999999999 4444321 123556655 4788899999999999999999
Q ss_pred CHHHHHHHHHhcCCcEEEeccccccCccccc
Q psy7343 343 CLADVEACLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
|.+|+.+++ ..|||+|++||+++.+|+++.
T Consensus 252 ~~~d~~~~l-~~GAd~V~vg~~~l~~p~~~~ 281 (311)
T 1ep3_A 252 NAQDVLEMY-MAGASAVAVGTANFADPFVCP 281 (311)
T ss_dssp SHHHHHHHH-HHTCSEEEECTHHHHCTTHHH
T ss_pred CHHHHHHHH-HcCCCEEEECHHHHcCcHHHH
Confidence 999999999 589999999999999999876
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=211.23 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=140.4
Q ss_pred CCCeeeeeccCC-----HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh--------
Q psy7343 203 DRPLIIQFCGND-----SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-------- 269 (487)
Q Consensus 203 ~~Pv~Vqi~g~d-----~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-------- 269 (487)
..|+++||.+++ .+++.++++.+.+.+|+||||++||+.. |...+.+++.+.+++++++++
T Consensus 179 ~~~vgvni~~~~~~~~~~~dy~~~a~~l~~~aD~ieiNiscPnt~------Glr~lq~~~~l~~il~~v~~~~~~~~~~~ 252 (443)
T 1tv5_A 179 KHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKNN 252 (443)
T ss_dssp TCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHHHHHHC---
T ss_pred CceEEEEecCcccchHHHHHHHHHHHHHhcCCCEEEEeccCCCCc------ccccccCHHHHHHHHHHHHHHHhhhcccC
Confidence 468999999887 8899999999988899999999999751 344456899999999999864
Q ss_pred ------------------------------------------ccCc-EEEEeecccccccHHHHHHHHHHcCCcEEEEEc
Q psy7343 270 ------------------------------------------VQVP-VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG 306 (487)
Q Consensus 270 ------------------------------------------~~iP-V~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vhg 306 (487)
.++| |++|++.+.+.++..++++.++++|+|+|++|+
T Consensus 253 ~~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~n 332 (443)
T 1tv5_A 253 IMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISN 332 (443)
T ss_dssp -----------------------------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ccccccCHHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3679 999998877666889999999999999999999
Q ss_pred cccC---------CCCCCCCCCC----HHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc-Ccc
Q psy7343 307 RTVD---------QRGMNTGLAS----WEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPA 370 (487)
Q Consensus 307 Rt~~---------~~g~~~g~~~----~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~ 370 (487)
++.. ..++++|.+. ++.++++++.+ ++|||++|||.|++|+.+++ ..|||+||+||+++. +|+
T Consensus 333 tt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l-~aGAd~Vqigrall~~gP~ 411 (443)
T 1tv5_A 333 TTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKI-EAGASVCQLYSCLVFNGMK 411 (443)
T ss_dssp CBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHH-HTTEEEEEESHHHHHHGGG
T ss_pred CCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHH-HcCCCEEEEcHHHHhcChH
Confidence 8763 2344566543 57899999999 89999999999999999999 689999999999886 999
Q ss_pred cccC
Q psy7343 371 LFTG 374 (487)
Q Consensus 371 lf~~ 374 (487)
++.+
T Consensus 412 l~~~ 415 (443)
T 1tv5_A 412 SAVQ 415 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-23 Score=226.51 Aligned_cols=269 Identities=12% Similarity=0.039 Sum_probs=179.6
Q ss_pred hhcCCCceEEecCCCCCCHH-------HHHHHHHcCCCeEEccceeccccc----------cCcH--HHHHHhh--hCCC
Q psy7343 74 TQLGSPRFILAPMVDASELP-------WRLLSRRYGSHLCYTPMVSAHQFI----------ADKK--LRQEILM--STPE 132 (487)
Q Consensus 74 ~~~~~~~~~LAPMag~td~p-------FR~l~~~~Gadl~~TEMi~a~~l~----------~~~~--~~~~~~~--~~~~ 132 (487)
.++ +|++++|||++.+..+ |+....+.|+++++||++.....- .+.. ..++.+. .+..
T Consensus 23 ~~l-~NRiv~apm~~~~~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~ 101 (690)
T 3k30_A 23 FTT-KNRFYQVPHCNGMGYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIADAIHEG 101 (690)
T ss_dssp EEC-SSSEEECCCCCSCSSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHHHHHHHHT
T ss_pred EEE-CCCeEeCCCcCCCCCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCCcCCccCCHHHHHHHHHHHHHHHhc
Confidence 455 8899999999776533 666677789999999998754322 1111 1112221 2445
Q ss_pred CCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-
Q psy7343 133 DRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC- 211 (487)
Q Consensus 133 e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~- 211 (487)
..++++|+...+..... . . .|. +-+..+++-..... .....|--....
T Consensus 102 g~~i~~Ql~h~Gr~~~~------~--~-----------~~~-----~~~~ps~~~~~~~~-------~~~~~p~~~t~~e 150 (690)
T 3k30_A 102 GGLAGIELAHNGMNAPN------Q--L-----------SRE-----TPLGPGHLPVAPDT-------IAPIQARAMTKQD 150 (690)
T ss_dssp TCEEEEEEECCGGGCCC------T--T-----------TCC-----CCEESSSCBSCSSC-------CCSCBCEECCHHH
T ss_pred CCEEEEEccCCcccccc------c--c-----------cCC-----CccCCCCCcccccc-------cCCCCCCcCCHHH
Confidence 67899998543221100 0 0 000 00111110000000 000001000000
Q ss_pred -cCCHHHHHHHHHhhCCc-CcEEEeecCCCc----------ceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEE
Q psy7343 212 -GNDSKNLTEAAKLAEPH-CDGIDINIGCPQ----------MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCK 277 (487)
Q Consensus 212 -g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~----------~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vK 277 (487)
..-.++|.++|++++++ ||+||||++|+. .+.+.+.||+.+.++.+++.|++++|+++++ +||.+|
T Consensus 151 i~~~i~~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r 230 (690)
T 3k30_A 151 IDDLRRWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACR 230 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 01246889999998887 999999998754 5889999999999999999999999999994 566666
Q ss_pred eec------ccccccHHHHHHHHHHcCCcEEEEEccccCC---CCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHH
Q psy7343 278 IRI------YQDVNKTVEYARMLERAGCQLLAVHGRTVDQ---RGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADV 347 (487)
Q Consensus 278 iR~------~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~---~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da 347 (487)
+.. |++.++..++++.+++ |+|.+.||+++... ...+.+ ...++.++++++.+++|||++|+|++++++
T Consensus 231 ~s~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a 309 (690)
T 3k30_A 231 ITVEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPDAM 309 (690)
T ss_dssp EECCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGCSSCEEECSCCCCHHHH
T ss_pred ECccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHHHHHHHHHHcCCeEEEeCCCCCHHHH
Confidence 533 2334567889999988 89999999865211 111222 234688999999999999999999999999
Q ss_pred HHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 348 EACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
++++++.+||+|++||++++|||++.+.
T Consensus 310 ~~~l~~g~~d~v~~gR~~~~~P~~~~~~ 337 (690)
T 3k30_A 310 VRQIKAGILDLIGAARPSIADPFLPNKI 337 (690)
T ss_dssp HHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred HHHHHCCCcceEEEcHHhHhCccHHHHH
Confidence 9999777799999999999999998754
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=201.69 Aligned_cols=160 Identities=18% Similarity=0.242 Sum_probs=135.7
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~- 281 (487)
.++|.++|++++++ ||+||||++| |..+.+.+.||+.+.++.+++.+++++|++++ ++||.+|++..
T Consensus 157 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~ 236 (363)
T 3l5l_A 157 KQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLE 236 (363)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchh
Confidence 36788999988877 9999999984 88899999999999999999999999999998 58999999863
Q ss_pred ------cccccHHHHHHHHHHcCCcEEEEEccccCCCC-CCCCC-CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 282 ------QDVNKTVEYARMLERAGCQLLAVHGRTVDQRG-MNTGL-ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 282 ------~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g-~~~g~-~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
++.++..++++.+++.|+|+|.||+++..... ...++ .+++.++++++.+++||+++|||+|+++++++++.
T Consensus 237 ~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~ 316 (363)
T 3l5l_A 237 YDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQA 316 (363)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHC
Confidence 44567888999999999999999875432110 01122 36789999999999999999999999999999965
Q ss_pred cCCcEEEeccccccCcccccC
Q psy7343 354 TGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~lf~~ 374 (487)
.+||+|++||+++.||+++.+
T Consensus 317 G~aD~V~iGR~~lanPdl~~k 337 (363)
T 3l5l_A 317 NQLDLVSVGRAHLADPHWAYF 337 (363)
T ss_dssp TSCSEEECCHHHHHCTTHHHH
T ss_pred CCccEEEecHHHHhCchHHHH
Confidence 559999999999999999863
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-21 Score=220.95 Aligned_cols=267 Identities=21% Similarity=0.263 Sum_probs=190.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMV 157 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma 157 (487)
++++++|||.+.++.+|+..+.+.|.+.+.++.+..+.-.-. ...|-.+.+.-. |.
T Consensus 543 ~nPv~lAa~~~~~~~~~~~~~~~~g~G~vv~~t~~~~~~~~g------------n~~pr~~~~~~~---g~--------- 598 (1025)
T 1gte_A 543 INPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVT------------NVSPRIVRGTTS---GP--------- 598 (1025)
T ss_dssp SSSEEECSSGGGSSHHHHHHHHHHTCSEEECCCBCCGGGCCC------------CCSSCEEECCTT---CS---------
T ss_pred cCcccccCCCCCCCHHHHHHHHHCCcCeEEeceecccccccC------------CCCccEEecccc---cc---------
Confidence 678999999999999999999999999999888776532101 112222221000 00
Q ss_pred CCCchHHHHHHHHhCC---ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeee-ccCCHHHHHHHHHhhCCc-CcEE
Q psy7343 158 DASELPWRLLSRRYGS---HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF-CGNDSKNLTEAAKLAEPH-CDGI 232 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga---~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi-~g~d~~~~~~aa~~~~~~-~d~I 232 (487)
.+|. .+..+++++...+....+...++ +....+.|+++++ .+.+++++.++++++++. +|+|
T Consensus 599 ------------~~~~~~~~~~n~e~~~~~~~~~~~~~i~~~-~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~i 665 (1025)
T 1gte_A 599 ------------MYGPGQSSFLNIELISEKTAAYWCQSVTEL-KADFPDNIVIASIMCSYNKNDWMELSRKAEASGADAL 665 (1025)
T ss_dssp ------------CCSSCCSCEEECCCSCSSCHHHHHHHHHHH-HHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEE
T ss_pred ------------ccCCchhheeeeccccchhHHHHHHHHHHH-HhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEE
Confidence 0111 13455555543332221112222 2222357899987 478999999999998765 9999
Q ss_pred EeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE--------
Q psy7343 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV-------- 304 (487)
Q Consensus 233 diN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V-------- 304 (487)
+||++||.. ...+.+|+.+..+++.+.++++++++.+++||++|++. +..+..++++.++++|+|+|.+
T Consensus 666 ein~~~P~~-~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~--~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~ 742 (1025)
T 1gte_A 666 ELNLSCPHG-MGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTP--NVTDIVSIARAAKEGGADGVTATNTVSGLM 742 (1025)
T ss_dssp EEECCCBCC-CC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECS--CSSCHHHHHHHHHHHTCSEEEECCCEEECC
T ss_pred EEECCCCCC-CCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeCC--ChHHHHHHHHHHHHcCCCEEEEeccccccc
Confidence 999999987 33445788888999999999999999999999999975 4557899999999999999999
Q ss_pred --------------EccccCCCCCCCCCCCH----HHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 305 --------------HGRTVDQRGMNTGLASW----EHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 305 --------------hgRt~~~~g~~~g~~~~----~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
|||+.. ++++|.+.| +.++++++.+ ++|||++|||.|.+|+.+++ ..|||+||+||++
T Consensus 743 ~~~~~~~~~~~~~~~gr~~~--gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l-~~Ga~~v~vg~~~ 819 (1025)
T 1gte_A 743 GLKADGTPWPAVGAGKRTTY--GGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFL-HSGASVLQVCSAV 819 (1025)
T ss_dssp CBCTTSCBSSCBTTTTBBCC--EEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHH-HTTCSEEEESHHH
T ss_pred cccccccccccccccccccC--CCCCcccchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHH-HcCCCEEEEeecc
Confidence 444432 347777775 7899999998 99999999999999999999 5899999999999
Q ss_pred ccCcc-cccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 366 LYNPA-LFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 366 l~~P~-lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
+.+|+ ++. +...++..++...+
T Consensus 820 l~~~~~~~~-------~~~~~l~~~l~~~G 842 (1025)
T 1gte_A 820 QNQDFTVIQ-------DYCTGLKALLYLKS 842 (1025)
T ss_dssp HTSCTTHHH-------HHHHHHHHHHHHTT
T ss_pred ccCCccHHH-------HHHHHHHHHHHHcC
Confidence 98544 443 33344444555544
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-21 Score=198.82 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=135.3
Q ss_pred HHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccc-cCChHHHHHHHHHHhhhc------cCcEEEEe
Q psy7343 216 KNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYL-QDDWPLLTNLVSSLRQAV------QVPVSCKI 278 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l-~~d~~~i~eiv~~v~~~~------~iPV~vKi 278 (487)
++|.++|+++.++ ||+||||+|| |..+.+.+.||+.+ +++.+++.|++++|++++ ++||.+|+
T Consensus 170 ~~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRi 249 (419)
T 3l5a_A 170 QQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRA 249 (419)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEec
Confidence 6788999988877 9999999998 98899999999998 999999999999999987 67899998
Q ss_pred ec--------ccccccHHHHHHHHHH-cCCcEEEEEccccCCC---CCCCCC-CCHHHHHHHHhhC--CCcEEEcCCCCC
Q psy7343 279 RI--------YQDVNKTVEYARMLER-AGCQLLAVHGRTVDQR---GMNTGL-ASWEHITAVRKAL--TIPVIANGNIQC 343 (487)
Q Consensus 279 R~--------~~d~~~~~e~a~~le~-~G~d~I~VhgRt~~~~---g~~~g~-~~~~~i~~i~~~~--~iPVi~nGgI~s 343 (487)
+. |++.++..++++.+++ .|+|+|.||+++.... ....+. .+++.++.+++.+ ++|||++|||+|
T Consensus 250 s~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t 329 (419)
T 3l5a_A 250 TPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINS 329 (419)
T ss_dssp CSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCS
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCC
Confidence 87 4456678999999999 9999999998865211 112233 2567888999988 699999999999
Q ss_pred HHHHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 344 LADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 344 ~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+++++++++. ||+|++||+++.||+|+.+.
T Consensus 330 ~e~Ae~~L~~--aDlVaiGR~~IanPdlv~ki 359 (419)
T 3l5a_A 330 PESALDALQH--ADMVGMSSPFVTEPDFVHKL 359 (419)
T ss_dssp HHHHHHHGGG--CSEEEESTHHHHCTTHHHHH
T ss_pred HHHHHHHHHh--CCcHHHHHHHHHCcHHHHHH
Confidence 9999999955 99999999999999998654
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-20 Score=191.17 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=128.5
Q ss_pred HH-HHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeeccc-
Q psy7343 216 KN-LTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQ- 282 (487)
Q Consensus 216 ~~-~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~- 282 (487)
++ |.++|++++++ ||+||||+|| |..+.+.+.||+.++++.+++.+++++|+++++ .||.++++...
T Consensus 167 ~~~~~~aa~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~~~ 246 (407)
T 3tjl_A 167 YEAYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWAT 246 (407)
T ss_dssp HTHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcccc
Confidence 56 88889888777 9999999999 989999999999999999999999999999985 48888887521
Q ss_pred --------c----cccHHHHHHHH---HHcC--CcEEEEE-ccccCCCCCCCCC-CCHHHHHHHHhhCCCcEEEcCCCCC
Q psy7343 283 --------D----VNKTVEYARML---ERAG--CQLLAVH-GRTVDQRGMNTGL-ASWEHITAVRKALTIPVIANGNIQC 343 (487)
Q Consensus 283 --------d----~~~~~e~a~~l---e~~G--~d~I~Vh-gRt~~~~g~~~g~-~~~~~i~~i~~~~~iPVi~nGgI~s 343 (487)
| ..+..++++.+ ++.| +|+|+|| +|+..+. ..+. ..++.+..+++..++|||+||||.+
T Consensus 247 ~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~--~~~~~~~~~~~~~ir~~~~~PvI~~Ggi~~ 324 (407)
T 3tjl_A 247 FQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNV--DVSEEDQAGDNEFVSKIWKGVILKAGNYSY 324 (407)
T ss_dssp GGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTE--ECCGGGCCCCSHHHHHHCCSEEEEESCGGG
T ss_pred cCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCC--cCCccchhHHHHHHHHHhCCCEEecCCCCC
Confidence 1 22467888899 8889 9999998 6765432 1111 1234567788888999999999999
Q ss_pred HHHHHHHHHh---cCCcEEEeccccccCcccccC
Q psy7343 344 LADVEACLAQ---TGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 344 ~~da~~~l~~---~Gad~VmiGRa~l~~P~lf~~ 374 (487)
.+|+.++++. .+||+|++||+++.||||+.+
T Consensus 325 ~~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL~~r 358 (407)
T 3tjl_A 325 DAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWK 358 (407)
T ss_dssp GTTTTHHHHHHHTTSSEEEECSHHHHHCTTHHHH
T ss_pred HHHHHHHHHhhccCCCeEEEeChhhhhCchHHHH
Confidence 9988888766 789999999999999999864
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=190.82 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=130.1
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC-cEEEEeecccc
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV-PVSCKIRIYQD 283 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i-PV~vKiR~~~d 283 (487)
.++|+++|+++.++ ||+||||++| |..+.+.+.||+.+.++.+++.|++++|+++++. ||.+|++....
T Consensus 152 i~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~ 231 (362)
T 4ab4_A 152 VEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRAD 231 (362)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeecccc
Confidence 36788999988777 9999999999 9889999999999999999999999999999843 99999986421
Q ss_pred ---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 284 ---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 284 ---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
.++..++++.+++.|+|.|.||+++ . +. +.++++++.+++|||++|+| |+++++++++..
T Consensus 232 ~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~---~----~~---~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~g 300 (362)
T 4ab4_A 232 AHDMGDADRAETFTYVARELGKRGIAFICSRERE---A----DD---SIGPLIKEAFGGPYIVNERF-DKASANAALASG 300 (362)
T ss_dssp SSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC---C----TT---CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTT
T ss_pred ccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC---C----CH---HHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcC
Confidence 2356888999999999999999886 1 11 35788899999999999999 999999999777
Q ss_pred CCcEEEeccccccCcccccCC
Q psy7343 355 GVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+||+|++||+++.||+++.++
T Consensus 301 ~aD~V~iGR~~lanPdl~~k~ 321 (362)
T 4ab4_A 301 KADAVAFGVPFIANPDLPARL 321 (362)
T ss_dssp SCSEEEESHHHHHCTTHHHHH
T ss_pred CccEEEECHHhHhCcHHHHHH
Confidence 799999999999999998754
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=186.40 Aligned_cols=201 Identities=17% Similarity=0.212 Sum_probs=154.0
Q ss_pred CCcccccccc--CCC----chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeecc-CCHHHHHH
Q psy7343 148 SPRFILAPMV--DAS----ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG-NDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma--~~t----d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g-~d~~~~~~ 220 (487)
+.|+++|||+ +++ +.+++..+.++|+.++.+.+.+ ..+ +++... ..+.|+.+||++ .|.+...+
T Consensus 80 ~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s-~~l-------e~v~~~-~~~~~~~~QLy~~~d~~~~~~ 150 (368)
T 2nli_A 80 KAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG-ATF-------EEISEG-LNGGPRWFQIYMAKDDQQNRD 150 (368)
T ss_dssp SSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCS-SCH-------HHHHHH-HTTCCEEEEECCBSSHHHHHH
T ss_pred CCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHh-HHH-------HHHHHh-CCCCCEEEEEeccCCHHHHHH
Confidence 6799999999 766 4678999999999888887765 222 122221 135799999986 78888888
Q ss_pred HHHhhCCc-CcEEEeecCCCcc------------------eeec----cCccccc-----cCChHHHHHHHHHHhhhccC
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQM------------------VAKR----GHYGAYL-----QDDWPLLTNLVSSLRQAVQV 272 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~------------------i~~~----gr~G~~l-----~~d~~~i~eiv~~v~~~~~i 272 (487)
+++++++. +++|+||++||.. +... ...|+.+ ..|++...+.++++++.+++
T Consensus 151 ~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~lr~~~~~ 230 (368)
T 2nli_A 151 ILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGL 230 (368)
T ss_dssp HHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHHHHHHSSS
T ss_pred HHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHHHHHHHHHHcCC
Confidence 99888776 8999999999861 1100 1123332 12566667778899998999
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~ 350 (487)
||++|+- ...+.++.++++|+|+|.|++++..+. +.+.+.++.+.++++.+ ++|||++|||++.+|+.++
T Consensus 231 PvivK~v------~~~e~a~~a~~~Gad~I~vs~~ggr~~--~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~ka 302 (368)
T 2nli_A 231 PVFVKGI------QHPEDADMAIKRGASGIWVSNHGARQL--YEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKA 302 (368)
T ss_dssp CEEEEEE------CSHHHHHHHHHTTCSEEEECCGGGTSC--SSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHH
T ss_pred CEEEEcC------CCHHHHHHHHHcCCCEEEEcCCCcCCC--CCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHH
Confidence 9999962 346778899999999999976654443 56788999999999888 7999999999999999999
Q ss_pred HHhcCCcEEEeccccc
Q psy7343 351 LAQTGVAGVMTAEGNL 366 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l 366 (487)
+ ..|||+|||||+++
T Consensus 303 l-alGAd~V~iGr~~l 317 (368)
T 2nli_A 303 L-ASGADVVALGRPVL 317 (368)
T ss_dssp H-HTTCSEEEECHHHH
T ss_pred H-HcCCCEEEECHHHH
Confidence 9 59999999999554
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-21 Score=194.09 Aligned_cols=205 Identities=20% Similarity=0.329 Sum_probs=147.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMV 157 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma 157 (487)
++++++|||+|+||.+||.+++++|++++||||++++.+.+..+..++.+ .++.+.|+++|+.+. ++..+.....
T Consensus 4 ~nri~~APM~~~t~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~g~----~~~~~~~aa~ 78 (318)
T 1vhn_A 4 EVKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIFGS----EPNELSEAAR 78 (318)
T ss_dssp -CEEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEECS----CHHHHHHHHH
T ss_pred CCCEEECCCCCCCcHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeCCC----CHHHHHHHHH
Confidence 67999999999999999999999999999999999999888777777787 778889999998521 2222221111
Q ss_pred CCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCCHHHHHHHHHhhCCc-C
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GNDSKNLTEAAKLAEPH-C 229 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~-~ 229 (487)
.+.+. |+.+..|+| ||.+.+. |..|+++++...++++. ...+.||+||++ |.+.++..+.++.+++. +
T Consensus 79 ~a~~~-~d~Iein~g---cP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~ 154 (318)
T 1vhn_A 79 ILSEK-YKWIDLNAG---CPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGV 154 (318)
T ss_dssp HHTTT-CSEEEEEEC---CCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTC
T ss_pred HHHHh-CCEEEEECC---CCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCC
Confidence 22233 444555667 6665442 67788999888888752 223589999998 55544444778888776 7
Q ss_pred cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 230 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 230 d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
|+|.++.+.. .+.+. ...+++.+. .+++ ++||++++ ++.+..++.+.+++.|+|+|++ ||..
T Consensus 155 d~i~v~g~~~-----~~~~~--~~~~~~~i~----~i~~--~ipVi~~G----gI~s~~da~~~l~~~gad~V~i-GR~~ 216 (318)
T 1vhn_A 155 DEVFIHTRTV-----VQSFT--GRAEWKALS----VLEK--RIPTFVSG----DIFTPEDAKRALEESGCDGLLV-ARGA 216 (318)
T ss_dssp CEEEEESSCT-----TTTTS--SCCCGGGGG----GSCC--SSCEEEES----SCCSHHHHHHHHHHHCCSEEEE-SGGG
T ss_pred CEEEEcCCCc-----cccCC--CCcCHHHHH----HHHc--CCeEEEEC----CcCCHHHHHHHHHcCCCCEEEE-CHHH
Confidence 7777775431 11111 123555443 4555 89999998 7888999999999899999999 9854
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8e-19 Score=179.42 Aligned_cols=207 Identities=17% Similarity=0.193 Sum_probs=147.0
Q ss_pred CCccccccccCCC-------chHHHHHHHHhCCccceeccccchhhhcChhH--HHHHHhcCCCCCCeeeeec-cCCHHH
Q psy7343 148 SPRFILAPMVDAS-------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL--RQEILMSTPEDRPLIIQFC-GNDSKN 217 (487)
Q Consensus 148 ~~~~~lApma~~t-------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~--~~~~l~~~~~~~Pv~Vqi~-g~d~~~ 217 (487)
+.|+++|||++++ +.+++..+.++|+.++.+.+.++ +.++.. ..++++....+.|+++|+. +.+++.
T Consensus 55 ~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~ 131 (349)
T 1p0k_A 55 SSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA---LKDPSERLSYEIVRKENPNGLIFANLGSEATAAQ 131 (349)
T ss_dssp SCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT---TTCHHHHHHHHHHHHHCSSSCEEEEEETTCCHHH
T ss_pred CCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc---ccCcccccceehhhhhCCCceeEEeecCCCCHHH
Confidence 5799999999998 67788899999987766665443 344322 2233443455789999998 778877
Q ss_pred HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee-cccccccHHHHHHHHHH
Q psy7343 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-IYQDVNKTVEYARMLER 296 (487)
Q Consensus 218 ~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-~~~d~~~~~e~a~~le~ 296 (487)
+.++++.+ .+|+|+||++||+...... | ..+.+.+.++++++++.+++||++|+. .+.+ .+.++.+++
T Consensus 132 ~~~~~~~~--gad~i~i~~~~~~~~~~~~--~---~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~----~~~a~~a~~ 200 (349)
T 1p0k_A 132 AKEAVEMI--GANALQIHLNVIQEIVMPE--G---DRSFSGALKRIEQICSRVSVPVIVKEVGFGMS----KASAGKLYE 200 (349)
T ss_dssp HHHHHHHT--TCSEEEEEECTTTTC-------------CTTHHHHHHHHHHHCSSCEEEEEESSCCC----HHHHHHHHH
T ss_pred HHHHHHhc--CCCeEEecccchhhhcCCC--C---CcchHHHHHHHHHHHHHcCCCEEEEecCCCCC----HHHHHHHHH
Confidence 66554432 2899999999987532211 1 111222567888888888999999973 2222 567889999
Q ss_pred cCCcEEEE--Ecccc-------CCC-----CCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 297 AGCQLLAV--HGRTV-------DQR-----GMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 297 ~G~d~I~V--hgRt~-------~~~-----g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+|+|+|.+ ||+|. .+. -...|.+.++.+.++++.+ ++|||++|||+|++|+.+++ ..|||+|++
T Consensus 201 ~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l-~~GAd~V~i 279 (349)
T 1p0k_A 201 AGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAI-ALGASCTGM 279 (349)
T ss_dssp HTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH-HTTCSEEEE
T ss_pred cCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHH-HcCCCEEEE
Confidence 99999999 66642 110 0245677889999999887 89999999999999999999 589999999
Q ss_pred ccccccCc
Q psy7343 362 AEGNLYNP 369 (487)
Q Consensus 362 GRa~l~~P 369 (487)
||+++...
T Consensus 280 G~~~l~~~ 287 (349)
T 1p0k_A 280 AGHFLKAL 287 (349)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 99877653
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-20 Score=188.54 Aligned_cols=150 Identities=19% Similarity=0.174 Sum_probs=129.9
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC-cEEEEeecccc
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV-PVSCKIRIYQD 283 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i-PV~vKiR~~~d 283 (487)
.++|+++|++++++ ||+||||++| |..+.+.+.||+.+.++.+++.|++++|+++++. ||.+|++....
T Consensus 160 i~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~ 239 (361)
T 3gka_A 160 VAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGD 239 (361)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccc
Confidence 36788999988877 9999999999 9899999999999999999999999999999843 99999986321
Q ss_pred ---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 284 ---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 284 ---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
.++..++++.+++.|+|.|.+|+++. +. +.++++++.+++|||++|+| |+++++++++..
T Consensus 240 ~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~-------~~---~~~~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~G 308 (361)
T 3gka_A 240 AHTMGDSDPAATFGHVARELGRRRIAFLFARESFG-------GD---AIGQQLKAAFGGPFIVNENF-TLDSAQAALDAG 308 (361)
T ss_dssp SSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCS-------TT---CCHHHHHHHHCSCEEEESSC-CHHHHHHHHHTT
T ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCC-------CH---HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHcC
Confidence 23568899999999999999998751 11 35788899999999999999 999999999777
Q ss_pred CCcEEEeccccccCcccccCC
Q psy7343 355 GVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+||+|++||+++.||+++.+.
T Consensus 309 ~aD~V~iGR~~ladPdl~~k~ 329 (361)
T 3gka_A 309 QADAVAWGKLFIANPDLPRRF 329 (361)
T ss_dssp SCSEEEESHHHHHCTTHHHHH
T ss_pred CccEEEECHHhHhCcHHHHHH
Confidence 799999999999999998743
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-20 Score=189.88 Aligned_cols=208 Identities=18% Similarity=0.254 Sum_probs=140.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
++++++|||+|+||.+||.+++++|+ +++||||++++.+++++.+ ++...++.+.|+++|+. |..+..++.+
T Consensus 3 ~nriv~APM~g~td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~--~~~~~~~~~~p~~vQL~-----g~~p~~~~~a 75 (350)
T 3b0p_A 3 DPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRE--RLLAFRPEEHPIALQLA-----GSDPKSLAEA 75 (350)
T ss_dssp CCSEEECCCTTTSSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHH--HHHCCCGGGCSEEEEEE-----CSCHHHHHHH
T ss_pred CCCEEECCCCCCCHHHHHHHHHHcCCCCEEEeCCEEechhhcCCHH--HHhccCCCCCeEEEEeC-----CCCHHHHHHH
Confidence 67899999999999999999999997 9999999999998876653 45556778899999974 2222111111
Q ss_pred cC-CCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCC----HHHHHHHHHh
Q psy7343 157 VD-ASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GND----SKNLTEAAKL 224 (487)
Q Consensus 157 a~-~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d----~~~~~~aa~~ 224 (487)
+. +.+.+|+.+..|+| ||.+.+. |..|+++++...++++. ...+.||++|++ |.+ .++..+.++.
T Consensus 76 A~~a~~~G~D~IeIn~g---cP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~ 152 (350)
T 3b0p_A 76 ARIGEAFGYDEINLNLG---CPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEA 152 (350)
T ss_dssp HHHHHHTTCSEEEEEEC---CCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCc---CCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHH
Confidence 10 01112222333344 5555442 67888999888888752 223689999997 432 2467788888
Q ss_pred hCCc-CcEEEeecCCCcceeeccCcccc----ccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcC
Q psy7343 225 AEPH-CDGIDINIGCPQMVAKRGHYGAY----LQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAG 298 (487)
Q Consensus 225 ~~~~-~d~IdiN~GcP~~i~~~gr~G~~----l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G 298 (487)
++++ +|+|.++.+... . +-.|.. -..+++.+.+ +++.+ ++||++++ ++.+..++.+.++ |
T Consensus 153 l~~aG~d~I~V~~r~~~-~---g~~g~~~~~~~~~~~~~i~~----ik~~~~~iPVianG----gI~s~eda~~~l~--G 218 (350)
T 3b0p_A 153 MAEAGVKVFVVHARSAL-L---ALSTKANREIPPLRHDWVHR----LKGDFPQLTFVTNG----GIRSLEEALFHLK--R 218 (350)
T ss_dssp HHHTTCCEEEEECSCBC--------------CCCCCHHHHHH----HHHHCTTSEEEEES----SCCSHHHHHHHHT--T
T ss_pred HHHcCCCEEEEecCchh-c---ccCcccccCCCcccHHHHHH----HHHhCCCCeEEEEC----CcCCHHHHHHHHh--C
Confidence 8777 777777654311 0 101110 0135655554 56667 89999998 7778888888885 9
Q ss_pred CcEEEEEccccC
Q psy7343 299 CQLLAVHGRTVD 310 (487)
Q Consensus 299 ~d~I~VhgRt~~ 310 (487)
+|+|++ ||...
T Consensus 219 aD~V~i-GRa~l 229 (350)
T 3b0p_A 219 VDGVML-GRAVY 229 (350)
T ss_dssp SSEEEE-CHHHH
T ss_pred CCEEEE-CHHHH
Confidence 999999 98643
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=180.54 Aligned_cols=201 Identities=14% Similarity=0.148 Sum_probs=150.9
Q ss_pred CCccccccccCCCchH-------HHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeecc-CCHHHHH
Q psy7343 148 SPRFILAPMVDASELP-------WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG-NDSKNLT 219 (487)
Q Consensus 148 ~~~~~lApma~~td~~-------fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g-~d~~~~~ 219 (487)
+.|+++||| ++++.. ++..+.++|+.++.+.+.+. .+ +++... ..+.|+.+|+++ .|.+...
T Consensus 94 ~~Pi~iAPm-g~~~l~~~~~e~~laraA~~~G~~~~~s~~~s~-~l-------e~v~~~-~~~~~~~~QLy~~~d~~~~~ 163 (392)
T 2nzl_A 94 SMPICVGAT-AMQRMAHVDGELATVRACQSLGTGMMLSSWATS-SI-------EEVAEA-GPEALRWLQLYIYKDREVTK 163 (392)
T ss_dssp SSSEEECCC-SCGGGTSTTHHHHHHHHHHHHTCEEEECTTCSS-CH-------HHHHHH-CTTSEEEEEECCBSSHHHHH
T ss_pred CCceEeccc-cccccccchHHHHHHHHHHHcCCCeeccchHHH-HH-------HHHHHh-cCCCcEEEEEEecCCHHHHH
Confidence 679999999 666654 88999999988887776641 11 222222 235799999985 7888888
Q ss_pred HHHHhhCCc-CcEEEeecCCCcc----------------ee----e------cc----Cccc---cccC---ChHHHHHH
Q psy7343 220 EAAKLAEPH-CDGIDINIGCPQM----------------VA----K------RG----HYGA---YLQD---DWPLLTNL 262 (487)
Q Consensus 220 ~aa~~~~~~-~d~IdiN~GcP~~----------------i~----~------~g----r~G~---~l~~---d~~~i~ei 262 (487)
++++++++. +++|+||++||.. +. . .. ..|+ .+.. |++...+.
T Consensus 164 ~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~ 243 (392)
T 2nzl_A 164 KLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWED 243 (392)
T ss_dssp HHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHH
T ss_pred HHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHH
Confidence 888888776 8999999999873 10 0 00 0111 1111 66666777
Q ss_pred HHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCC
Q psy7343 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGN 340 (487)
Q Consensus 263 v~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGg 340 (487)
++++++.+++||++|+- ...+.++.++++|+|+|.|++++..+. +.+++.++.+.++++.+ ++|||++||
T Consensus 244 i~~lr~~~~~PvivKgv------~~~e~A~~a~~aGad~I~vs~~ggr~~--~~g~~~~~~l~~v~~av~~~ipVia~GG 315 (392)
T 2nzl_A 244 IKWLRRLTSLPIVAKGI------LRGDDAREAVKHGLNGILVSNHGARQL--DGVPATIDVLPEIVEAVEGKVEVFLDGG 315 (392)
T ss_dssp HHHHC--CCSCEEEEEE------CCHHHHHHHHHTTCCEEEECCGGGTSS--TTCCCHHHHHHHHHHHHTTSSEEEECSS
T ss_pred HHHHHHhhCCCEEEEec------CCHHHHHHHHHcCCCEEEeCCCCCCcC--CCCcChHHHHHHHHHHcCCCCEEEEECC
Confidence 88899989999999962 236678899999999999977665443 56788899999999887 599999999
Q ss_pred CCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 341 IQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 341 I~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
|++.+|+.+++ ..|||+|++||+++.
T Consensus 316 I~~g~Dv~kal-alGAd~V~iGr~~l~ 341 (392)
T 2nzl_A 316 VRKGTDVLKAL-ALGAKAVFVGRPIVW 341 (392)
T ss_dssp CCSHHHHHHHH-HTTCSEEEECHHHHH
T ss_pred CCCHHHHHHHH-HhCCCeeEECHHHHH
Confidence 99999999999 589999999996654
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-19 Score=182.19 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=130.7
Q ss_pred CHHHHHHHHHhhC-Cc-CcEEEeecCC---------Ccceee-ccCccc-cccCChHHHHHHHHHHhhhcc-CcEEEEee
Q psy7343 214 DSKNLTEAAKLAE-PH-CDGIDINIGC---------PQMVAK-RGHYGA-YLQDDWPLLTNLVSSLRQAVQ-VPVSCKIR 279 (487)
Q Consensus 214 d~~~~~~aa~~~~-~~-~d~IdiN~Gc---------P~~i~~-~gr~G~-~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR 279 (487)
..++|+++|+++. ++ ||+||||++| |..+.+ .+.||+ .+.++.+++.+++++|+++++ .||.+|++
T Consensus 172 ~i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis 251 (379)
T 3aty_A 172 IIPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRIS 251 (379)
T ss_dssp HHHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 4578889999887 76 9999999997 777888 899999 899999999999999999985 48999987
Q ss_pred ccc---------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 280 IYQ---------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 280 ~~~---------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
... +.++..++++.+++.|+|+|.+|+++.... .+ + .+ ++++++.+++|||++|+| |+++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~-~~---~-~~-~~~ir~~~~iPvi~~G~i-t~~~a~~~ 324 (379)
T 3aty_A 252 PLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQ-QI---G-DV-VAWVRGSYSGVKISNLRY-DFEEADQQ 324 (379)
T ss_dssp TTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSC-CC---C-CH-HHHHHTTCCSCEEEESSC-CHHHHHHH
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCC-Cc---c-HH-HHHHHHHCCCcEEEECCC-CHHHHHHH
Confidence 732 234578899999999999999998763221 11 2 26 899999999999999999 99999999
Q ss_pred HHhcCCcEEEeccccccCcccccC
Q psy7343 351 LAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
+++.+||+|++||+++.||+++.+
T Consensus 325 l~~g~aD~V~igR~~l~~P~l~~k 348 (379)
T 3aty_A 325 IREGKVDAVAFGAKFIANPDLVER 348 (379)
T ss_dssp HHTTSCSEEEESHHHHHCTTHHHH
T ss_pred HHcCCCeEEEecHHHHhCcHHHHH
Confidence 977679999999999999999864
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=171.38 Aligned_cols=200 Identities=22% Similarity=0.250 Sum_probs=149.0
Q ss_pred CCccccccccCCCchH-------HHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHH
Q psy7343 148 SPRFILAPMVDASELP-------WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLT 219 (487)
Q Consensus 148 ~~~~~lApma~~td~~-------fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~ 219 (487)
+.|+++||| +++++. ++..+.++|+.++.+.+.+.+ .+++....+ .|..+|++ +.|++...
T Consensus 71 ~~Pi~iAPm-g~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~--------ieev~~~~~--~~~~~QLy~~~d~~~~~ 139 (370)
T 1gox_A 71 SMPIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTLSSWATSS--------VEEVASTGP--GIRFFQLYVYKDRNVVA 139 (370)
T ss_dssp SSSEEECCC-SCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSC--------HHHHHTTCC--CCEEEEECCBSSHHHHH
T ss_pred CCceeEccc-chhhhccchHHHHHHHHHHHcCCCeeccCCCCCC--------HHHHHhhcC--CCceEEEecCCCchHHH
Confidence 679999999 777776 889999999888877666421 233332222 78999997 78888888
Q ss_pred HHHHhhCCc-CcEEEeecCCCcc----------------e----eec-------cCccccc------cCChHHHHHHHHH
Q psy7343 220 EAAKLAEPH-CDGIDINIGCPQM----------------V----AKR-------GHYGAYL------QDDWPLLTNLVSS 265 (487)
Q Consensus 220 ~aa~~~~~~-~d~IdiN~GcP~~----------------i----~~~-------gr~G~~l------~~d~~~i~eiv~~ 265 (487)
++++.+++. ++.|+||++||.. + ... ...|+.+ ..++....+.+++
T Consensus 140 ~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~ 219 (370)
T 1gox_A 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAW 219 (370)
T ss_dssp HHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHH
T ss_pred HHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHH
Confidence 888888776 8999999999853 0 011 1112221 2244444566788
Q ss_pred HhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCC
Q psy7343 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQC 343 (487)
Q Consensus 266 v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s 343 (487)
+++.+++||++|+.. ..+.++.+.++|+|+|.|.+....+. ..+.++++.+.++++.+ ++|||++|||++
T Consensus 220 l~~~~~~pv~vK~~~------~~e~a~~a~~~Gad~I~vs~~ggr~~--~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~ 291 (370)
T 1gox_A 220 LQTITSLPILVKGVI------TAEDARLAVQHGAAGIIVSNHGARQL--DYVPATIMALEEVVKAAQGRIPVFLDGGVRR 291 (370)
T ss_dssp HHHHCCSCEEEECCC------SHHHHHHHHHTTCSEEEECCGGGTSS--TTCCCHHHHHHHHHHHTTTSSCEEEESSCCS
T ss_pred HHHHhCCCEEEEecC------CHHHHHHHHHcCCCEEEECCCCCccC--CCcccHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 888889999999742 24667889999999999944322222 44567899999999988 799999999999
Q ss_pred HHHHHHHHHhcCCcEEEecccccc
Q psy7343 344 LADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 344 ~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.+|+.+++ ..|||+|+|||+++.
T Consensus 292 ~~D~~k~l-~~GAdaV~iGr~~l~ 314 (370)
T 1gox_A 292 GTDVFKAL-ALGAAGVFIGRPVVF 314 (370)
T ss_dssp HHHHHHHH-HHTCSEEEECHHHHH
T ss_pred HHHHHHHH-HcCCCEEeecHHHHH
Confidence 99999999 589999999997764
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=176.55 Aligned_cols=203 Identities=16% Similarity=0.135 Sum_probs=152.1
Q ss_pred CCccccccccC---C----CchHHHHHHHH--hCCccceeccccchhhhcChhHHHHHHhcC-CCCCCeeeeec-cCCHH
Q psy7343 148 SPRFILAPMVD---A----SELPWRLLSRR--YGSHLCYTPMVSAHQFIADKKLRQEILMST-PEDRPLIIQFC-GNDSK 216 (487)
Q Consensus 148 ~~~~~lApma~---~----td~~fr~i~~~--~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~-~~~~Pv~Vqi~-g~d~~ 216 (487)
+.|+++|||++ . .+.+++..+.+ +|+.++.++|.+.+ ..++.... ..+.|..+|++ +.|.+
T Consensus 189 ~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s--------~e~v~~~~~~~~~~~~~QLy~~~d~~ 260 (511)
T 1kbi_A 189 DVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCS--------PEEIIEAAPSDKQIQWYQLYVNSDRK 260 (511)
T ss_dssp SSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSC--------HHHHHHTCCCSSCCEEEEECCCSSHH
T ss_pred CCCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCC--------HHHHHhhcCCCCCCeEEEEeecCCHH
Confidence 67999999996 3 36779999999 99888877774331 12222223 23578999998 78899
Q ss_pred HHHHHHHhhCCc-CcEEEeecCCCcce-----eec-----------------cCccc--ccc---CChHHHHHHHHHHhh
Q psy7343 217 NLTEAAKLAEPH-CDGIDINIGCPQMV-----AKR-----------------GHYGA--YLQ---DDWPLLTNLVSSLRQ 268 (487)
Q Consensus 217 ~~~~aa~~~~~~-~d~IdiN~GcP~~i-----~~~-----------------gr~G~--~l~---~d~~~i~eiv~~v~~ 268 (487)
...+++++++++ +++|.|+++||+.- .++ +++++ .++ .|+++..+.++++++
T Consensus 261 ~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i~~lr~ 340 (511)
T 1kbi_A 261 ITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKK 340 (511)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHHHHHHH
Confidence 888999988877 89999999998610 111 11111 111 356666677888999
Q ss_pred hccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-------CCcEEEcCCC
Q psy7343 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-------TIPVIANGNI 341 (487)
Q Consensus 269 ~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-------~iPVi~nGgI 341 (487)
.+++||++|+- .+ .+.++.++++|+|+|.|++++..+. ..+.+.++.+.++++.+ ++|||++|||
T Consensus 341 ~~~~PvivKgv-----~~-~e~A~~a~~aGad~I~vs~hgG~~~--d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI 412 (511)
T 1kbi_A 341 KTKLPIVIKGV-----QR-TEDVIKAAEIGVSGVVLSNHGGRQL--DFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 412 (511)
T ss_dssp HCSSCEEEEEE-----CS-HHHHHHHHHTTCSEEEECCTTTTSS--TTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSC
T ss_pred HhCCcEEEEeC-----CC-HHHHHHHHHcCCCEEEEcCCCCccC--CCCCchHHHHHHHHHHHHhhccCCCcEEEEECCC
Confidence 89999999951 12 5668899999999999965444343 44567789999988876 7999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 342 QCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 342 ~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
++.+|+.+++ ..|||+|||||+++.
T Consensus 413 ~~g~Dv~kaL-alGAdaV~iGr~~l~ 437 (511)
T 1kbi_A 413 RRGTDVLKAL-CLGAKGVGLGRPFLY 437 (511)
T ss_dssp CSHHHHHHHH-HHTCSEEEECHHHHH
T ss_pred CCHHHHHHHH-HcCCCEEEECHHHHH
Confidence 9999999999 589999999996653
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-17 Score=165.72 Aligned_cols=191 Identities=18% Similarity=0.229 Sum_probs=137.0
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhhCC----cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLAEP----HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC 276 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~~~----~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v 276 (487)
..+.|+++++.+.+++++.+.++.+++ .+|.|+||++||+. . .+..+..+++.+.++++++++.++.|+.+
T Consensus 124 ~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~---~--g~~~l~~~~~~~~~i~~~v~~~~~~pv~v 198 (354)
T 3tjx_A 124 YGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNV---P--GKPQVAYDFDAMRQCLTAVSEVYPHSFGV 198 (354)
T ss_dssp TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC--------------CTTSHHHHHHHHHHHHHHCCSCEEE
T ss_pred cCCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCC---c--chhhhccCHHHHHHHHHHHHHHhhccccc
Confidence 346899999999998888887776544 37899999999964 1 24566778999999999999999999999
Q ss_pred EeecccccccHHHHHHHHHHcC-CcEEEE----------Eccc-------cCCCCCCCCCCCHHH----HHHHHhhC-CC
Q psy7343 277 KIRIYQDVNKTVEYARMLERAG-CQLLAV----------HGRT-------VDQRGMNTGLASWEH----ITAVRKAL-TI 333 (487)
Q Consensus 277 KiR~~~d~~~~~e~a~~le~~G-~d~I~V----------hgRt-------~~~~g~~~g~~~~~~----i~~i~~~~-~i 333 (487)
|++.+.+.......+..+.+.+ ++.+.. ..++ ..+.++++|++.++. +.++++.+ ++
T Consensus 199 K~~p~~~~~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~~~~ 278 (354)
T 3tjx_A 199 KMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGK 278 (354)
T ss_dssp EECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTS
T ss_pred ccCCCCCchhHHHHHHHHHhhcccchhheecccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhcCCC
Confidence 9988776655666666666554 343332 1122 123456888888754 45555554 79
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc-cCcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHHHH
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNL-YNPALFTGQTRPAWELASEYLDLVAQYP-VRLQYARGHV 404 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l-~~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~~l 404 (487)
|||++|||.|.+|+.+++ ..|||+||||||++ .+|++|. ++.++..+++++.+ ..+.++++.+
T Consensus 279 pIIg~GGI~s~~Da~e~i-~aGAs~Vqv~Ta~~y~GP~~~~-------~I~~~L~~~L~~~G~~si~e~~G~~ 343 (354)
T 3tjx_A 279 LIFGCGGVYTGEDAFLHV-LAGASMVQVGTALQEEGPSIFE-------RLTSELLGVMAKKRYQTLDEFRGKV 343 (354)
T ss_dssp EEEEESSCCSHHHHHHHH-HHTEEEEEECHHHHHHCTTHHH-------HHHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred cEEEeCCcCCHHHHHHHH-HcCCCEEEEChhhhhcCchHHH-------HHHHHHHHHHHHcCCCCHHHHhChh
Confidence 999999999999999999 69999999999975 6799987 45566666776654 3455555543
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-17 Score=164.80 Aligned_cols=205 Identities=19% Similarity=0.216 Sum_probs=142.1
Q ss_pred CCccccccccCCCch------HHHHHHHHhCCccceeccccchhhhcChh--HHHHHHhcCCCCCCee-----eeeccCC
Q psy7343 148 SPRFILAPMVDASEL------PWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMSTPEDRPLI-----IQFCGND 214 (487)
Q Consensus 148 ~~~~~lApma~~td~------~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~--~~~~~l~~~~~~~Pv~-----Vqi~g~d 214 (487)
+.|+++|||++.++. +++..+.++|+.++.+++.+. +.++. ...+ ++....+.|+. +|+++.+
T Consensus 58 ~~P~~iapm~g~~~~~~~~~~~la~~a~~~G~~~~~~~~~~~---le~~~~~~~~q-l~~~~~d~pv~~~~~~~q~~~~~ 133 (332)
T 1vcf_A 58 KAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRIL---LERPEALRSFR-VRKVAPKALLIANLGLAQLRRYG 133 (332)
T ss_dssp SSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHH---HHCTTTHHHHC-CTTTCSSSCEEEEEEGGGGGTCC
T ss_pred CCceEEeccccCCcchhHHHHHHHHHHHHcCCCEEeCCchhc---ccCCCccceEE-eeccCCCceeecccChhhhhccC
Confidence 579999999988754 778999999988888877664 33321 1212 23334478886 6667778
Q ss_pred HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHH
Q psy7343 215 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294 (487)
Q Consensus 215 ~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~l 294 (487)
++.+.++++.+. ++++++|..+.......+ ..+++.+.++++++++ +++||++|+ ++++ ...+.++.+
T Consensus 134 ~~~~~~a~~~~~--~~a~~i~~n~~~~~~~~~------~~~~~~~~~~i~~vr~-~~~Pv~vK~-v~~g--~~~e~a~~~ 201 (332)
T 1vcf_A 134 RDDLLRLVEMLE--ADALAFHVNPLQEAVQRG------DTDFRGLVERLAELLP-LPFPVMVKE-VGHG--LSREAALAL 201 (332)
T ss_dssp HHHHHHHHHHHT--CSEEEEECCHHHHHHTTS------CCCCTTHHHHHHHHCS-CSSCEEEEC-SSSC--CCHHHHHHH
T ss_pred hHHHHHHHhhcC--CCceeeccchHHHHhcCC------CccHHHHHHHHHHHHc-CCCCEEEEe-cCCC--CCHHHHHHH
Confidence 888888877664 355544443312111111 1233446778889999 899999994 2222 345567899
Q ss_pred HHcCCcEEEE--Eccc--------cCC----CC--CCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 295 ERAGCQLLAV--HGRT--------VDQ----RG--MNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 295 e~~G~d~I~V--hgRt--------~~~----~g--~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
+++|+|+|.| ||+| +.+ .+ ...|.+.++.+.++++.+ ++|||++|||+|++|+.+++ ..|||
T Consensus 202 ~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal-~~GAd 280 (332)
T 1vcf_A 202 RDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKAL-ALGAD 280 (332)
T ss_dssp TTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHH-HHTCS
T ss_pred HHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHH-HhCCC
Confidence 9999999999 5554 211 00 245667889999999998 89999999999999999999 57999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
+|++||+++..+
T Consensus 281 ~V~igr~~l~~~ 292 (332)
T 1vcf_A 281 LLAVARPLLRPA 292 (332)
T ss_dssp EEEECGGGHHHH
T ss_pred hHhhhHHHHHHH
Confidence 999999888654
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=162.58 Aligned_cols=187 Identities=16% Similarity=0.171 Sum_probs=140.0
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAE 226 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~ 226 (487)
+.|++++||.++++..+...+.+.|+ +++.+++++...+...-+...+. .+.|+.|+++..+++ +.+.++.+.
T Consensus 12 ~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~-----~~~p~gvnl~~~~~~-~~~~~~~a~ 85 (332)
T 2z6i_A 12 DYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSL-----TDKPFGVNIMLLSPF-VEDIVDLVI 85 (332)
T ss_dssp SSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHH-----CCSCEEEEECTTSTT-HHHHHHHHH
T ss_pred CCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEecCCCCC-HHHHHHHHH
Confidence 56899999999999988887888775 77777766544432221112111 257999999875443 455555554
Q ss_pred Cc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEE
Q psy7343 227 PH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVH 305 (487)
Q Consensus 227 ~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vh 305 (487)
+. +|+|++|.|+|. ++++.+++ .++||++++ +..+.++.+++.|+|+|.++
T Consensus 86 ~~g~d~V~~~~g~p~--------------------~~i~~l~~-~g~~v~~~v-------~~~~~a~~~~~~GaD~i~v~ 137 (332)
T 2z6i_A 86 EEGVKVVTTGAGNPS--------------------KYMERFHE-AGIIVIPVV-------PSVALAKRMEKIGADAVIAE 137 (332)
T ss_dssp HTTCSEEEECSSCGG--------------------GTHHHHHH-TTCEEEEEE-------SSHHHHHHHHHTTCSCEEEE
T ss_pred HCCCCEEEECCCChH--------------------HHHHHHHH-cCCeEEEEe-------CCHHHHHHHHHcCCCEEEEE
Confidence 44 899999999862 13344554 388999887 34566788999999999998
Q ss_pred ccccCCCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 306 GRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 306 gRt~~~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
|+.. ++..| ..+|+.++++++.+++||+++|||.+++++.+++ ..|||+|++||+++.+|...
T Consensus 138 g~~~---GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al-~~GAdgV~vGs~~l~~~e~~ 201 (332)
T 2z6i_A 138 GMEA---GGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGF-MLGAEAVQVGTRFVVAKESN 201 (332)
T ss_dssp CTTS---SEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHTBTTCC
T ss_pred CCCC---CCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEecHHHhcCcccc
Confidence 8732 22333 5678999999999999999999999999999999 58999999999999999653
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-17 Score=166.12 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=122.0
Q ss_pred HHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeeccc--
Q psy7343 216 KNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQ-- 282 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~-- 282 (487)
++|+++|++++++ ||+||||+++ |..|.+++.||+.+.++.+++.|++++|+++++ -+|.+++....
T Consensus 152 ~~F~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~ 231 (358)
T 4a3u_A 152 DDYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEI 231 (358)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCccc
Confidence 6789999999887 9999999985 888999999999999999999999999999884 35665553321
Q ss_pred ----cc---ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 283 ----DV---NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 283 ----d~---~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
+. .....+++.+++.|++.+.++..+.... +......+..+++|+....||++ |++.+++.+++++++..
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~a~~ik~~~~~~v~~-~g~~~~~~ae~~l~~G~ 308 (358)
T 4a3u_A 232 QGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGT--FGKTDQPKLSPEIRKVFKPPLVL-NQDYTFETAQAALDSGV 308 (358)
T ss_dssp TTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCS--SSBCSSCCCHHHHHHHCCSCEEE-ESSCCHHHHHHHHHHTS
T ss_pred CCCcccchHHHHHHHHHhhhccCccccccccccccCc--ccccccHHHHHHHHHhcCCcEEE-eCCCCHHHHHHHHHcCC
Confidence 11 2345667888899999999965543322 21222234567788888888886 66889999999997667
Q ss_pred CcEEEeccccccCcccccC
Q psy7343 356 VAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 356 ad~VmiGRa~l~~P~lf~~ 374 (487)
||.|.+||++++||+|.++
T Consensus 309 aD~V~~gR~~ladPdlp~k 327 (358)
T 4a3u_A 309 ADAISFGRPFIGNPDLPRR 327 (358)
T ss_dssp CSEEEESHHHHHCTTHHHH
T ss_pred ceEeHhhHHHHhChhHHHH
Confidence 9999999999999999764
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-16 Score=158.35 Aligned_cols=206 Identities=16% Similarity=0.211 Sum_probs=141.4
Q ss_pred CCccccccccCCCchHH------HHHHHHhCCccceeccccchhhhcChhHHH--HHHhcCCCCCCeee-----eecc-C
Q psy7343 148 SPRFILAPMVDASELPW------RLLSRRYGSHLCYTPMVSAHQFIADKKLRQ--EILMSTPEDRPLII-----QFCG-N 213 (487)
Q Consensus 148 ~~~~~lApma~~td~~f------r~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~--~~l~~~~~~~Pv~V-----qi~g-~ 213 (487)
+.|++++||.|.++.++ +.+++++|+.+...+|..+ ++++.... +.++....+.|+.. |+.+ +
T Consensus 59 ~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~---l~~~~~~~s~~~vr~~ap~~~~~anlg~~ql~~~~ 135 (368)
T 3vkj_A 59 SVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVA---IEKAEARESFAIVRKVAPTIPIIANLGMPQLVKGY 135 (368)
T ss_dssp SSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHH---HHCGGGSHHHHHHHHHCSSSCEEEEEEGGGGGTTC
T ss_pred cCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhc---cCCHHHHhhHHHHHHhCcCcceecCcCeeecCCCC
Confidence 67999999999998774 7899999987766555433 33444322 22443344567754 5554 7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChH-HHHHHHHHHhhhccCcEEEEeecccccccHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP-LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~-~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
+++...++++.++..+..|+||... ...... | ..++. ...+.++.+++.+++||++|+ +|++. ..+.++
T Consensus 136 ~~~~~~~av~~~~a~al~Ihln~~~---~~~~p~-g---~~~~~~~~~~~i~~i~~~~~vPVivK~-vG~g~--s~~~A~ 205 (368)
T 3vkj_A 136 GLKEFQDAIQMIEADAIAVHLNPAQ---EVFQPE-G---EPEYQIYALEKLRDISKELSVPIIVKE-SGNGI--SMETAK 205 (368)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCHHH---HHHSSS-C---CCBCBTHHHHHHHHHHTTCSSCEEEEC-SSSCC--CHHHHH
T ss_pred CHHHHHHHHHHhcCCCeEEEecchh---hhhCCC-C---CchhhHHHHHHHHHHHHHcCCCEEEEe-CCCCC--CHHHHH
Confidence 8888889888885445667777332 111111 1 12333 356778889999999999996 44433 357789
Q ss_pred HHHHcCCcEEEEEccccC---------CC---------C---CCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHH
Q psy7343 293 MLERAGCQLLAVHGRTVD---------QR---------G---MNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 293 ~le~~G~d~I~VhgRt~~---------~~---------g---~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~ 350 (487)
.++++|+|+|.|+|++.. +. + ..-|.+....+.++++.+ ++|||++|||+|+.|+.++
T Consensus 206 ~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~ipvia~GGI~~~~d~~ka 285 (368)
T 3vkj_A 206 LLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKA 285 (368)
T ss_dssp HHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHSTTCEEEEESSCCSHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHH
Confidence 999999999999554221 00 0 000334446788888888 5999999999999999999
Q ss_pred HHhcCCcEEEecccccc
Q psy7343 351 LAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~ 367 (487)
+ ..|||+||+||+++.
T Consensus 286 l-~lGA~~v~ig~~~l~ 301 (368)
T 3vkj_A 286 I-ALGADIAGMALPVLK 301 (368)
T ss_dssp H-HHTCSEEEECHHHHH
T ss_pred H-HcCCCEEEEcHHHHH
Confidence 9 589999999997664
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=151.24 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=113.4
Q ss_pred HHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeeccc--
Q psy7343 216 KNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQ-- 282 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~-- 282 (487)
++|+++|++++++ ||+||||+++ |..|.+.+.||+.+.++.+++.||+++||+++ +-||.+++....
T Consensus 172 ~~F~~AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~ 251 (400)
T 4gbu_A 172 KEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVF 251 (400)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCT
T ss_pred HHHHHHHHHHHhcCcCeeeecccccchHHheecCcCCCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 6789999999887 9999999986 88899999999999999999999999999988 347777664311
Q ss_pred ----c------cccHHHHHHHHHHcC-----CcEEEEEccccCCCCCCCCCCCH--HHHHHHHhhCCCcEEEcCCCCCHH
Q psy7343 283 ----D------VNKTVEYARMLERAG-----CQLLAVHGRTVDQRGMNTGLASW--EHITAVRKALTIPVIANGNIQCLA 345 (487)
Q Consensus 283 ----d------~~~~~e~a~~le~~G-----~d~I~VhgRt~~~~g~~~g~~~~--~~i~~i~~~~~iPVi~nGgI~s~~ 345 (487)
+ ..+..++++.++..+ .+.+.+............+...+ ...+.+++.+++|||++|+|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~pvi~~G~~~~~~ 331 (400)
T 4gbu_A 252 NSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHP 331 (400)
T ss_dssp TTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTTTCCCSCCSTHHHHHCCSCEEEESSCTTCH
T ss_pred CCCCccchhhhHHHHHHHHHHHHHhhccCccccceeeecccCCCcccccccchhhhHHHHHHHHHhCCCEEEeCCCCChH
Confidence 0 112344455555433 44555532211110000111111 223446778899999999999877
Q ss_pred HHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 346 DVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
++.+.+.+.+||.|.+||++++||+|.++.
T Consensus 332 ~~~~~~~~~~aDlV~~gR~~iadPdl~~k~ 361 (400)
T 4gbu_A 332 EVVREEVKDKRTLIGYGRFFISNPDLVDRL 361 (400)
T ss_dssp HHHHHHTTSTTEEEECCHHHHHCTTHHHHH
T ss_pred HHHHHHHcCCCeEhHHHHHHHHCcHHHHHH
Confidence 777666577899999999999999997643
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=146.42 Aligned_cols=188 Identities=20% Similarity=0.164 Sum_probs=135.5
Q ss_pred CCccccccccCCCchHHHH-HHHHhCCccceeccccchhhhcChhHHHHHHhc-CCCCCCeeeeeccCCHHHHHHHHHhh
Q psy7343 148 SPRFILAPMVDASELPWRL-LSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-TPEDRPLIIQFCGNDSKNLTEAAKLA 225 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~-i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~-~~~~~Pv~Vqi~g~d~~~~~~aa~~~ 225 (487)
+.|++++||+++++..+.. ++...|.+++.+++.. ...+.++. ...+.|+++++ +.+++.+..+....
T Consensus 46 ~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~---------~~~~~i~~~~~~g~~v~v~~-g~~~~~~~~a~~~~ 115 (336)
T 1ypf_A 46 KLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPE---------KRISFIRDMQSRGLIASISV-GVKEDEYEFVQQLA 115 (336)
T ss_dssp SSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGG---------GHHHHHHHHHHTTCCCEEEE-CCSHHHHHHHHHHH
T ss_pred cCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCH---------HHHHHHHHHHhcCCeEEEeC-CCCHHHHHHHHHHH
Confidence 6799999999999988854 5666676776654432 22333331 12356899996 55666665554455
Q ss_pred CCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 226 EPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 226 ~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
+.. ++.|++|++. | ++....++++++++.++.|+++++ .+. ..+.++.++++|+|+|.
T Consensus 116 ~~g~~~~~i~i~~~~----------G-----~~~~~~~~i~~lr~~~~~~~vi~G----~v~-s~e~A~~a~~aGad~Iv 175 (336)
T 1ypf_A 116 AEHLTPEYITIDIAH----------G-----HSNAVINMIQHIKKHLPESFVIAG----NVG-TPEAVRELENAGADATK 175 (336)
T ss_dssp HTTCCCSEEEEECSS----------C-----CSHHHHHHHHHHHHHCTTSEEEEE----EEC-SHHHHHHHHHHTCSEEE
T ss_pred hcCCCCCEEEEECCC----------C-----CcHHHHHHHHHHHHhCCCCEEEEC----CcC-CHHHHHHHHHcCCCEEE
Confidence 554 7889988642 1 566777888889988865555564 333 35778899999999999
Q ss_pred E--Ecccc----CCCCCCCCCC--CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 304 V--HGRTV----DQRGMNTGLA--SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 304 V--hgRt~----~~~g~~~g~~--~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+ ||++. ... ..+.+ .++.+.++++.+++|||++|||++..|+.+++ ..|||+||+||+++.-
T Consensus 176 vs~hgG~~~~~~~~~--~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kal-alGAdaV~iGr~~l~t 245 (336)
T 1ypf_A 176 VGIGPGKVCITKIKT--GFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSI-RFGATMVMIGSLFAGH 245 (336)
T ss_dssp ECSSCSTTCHHHHHH--SCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHH-HTTCSEEEESGGGTTC
T ss_pred EecCCCceeeccccc--CcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHH-HcCCCEEEeChhhhcc
Confidence 9 54321 111 12333 57899999999999999999999999999999 6899999999999964
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-15 Score=150.78 Aligned_cols=200 Identities=15% Similarity=0.109 Sum_probs=140.4
Q ss_pred CCccccccccC--C----CchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHH
Q psy7343 148 SPRFILAPMVD--A----SELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEA 221 (487)
Q Consensus 148 ~~~~~lApma~--~----td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~a 221 (487)
+.|++++||++ . ++.++++.+.++|+.++.+. ++...+ +++... .+.|.++|+.....+...+.
T Consensus 72 ~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G~~~~vss-~s~~~l-------e~i~~~--~~~~~~fQly~~~~~~~~~~ 141 (380)
T 1p4c_A 72 SMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLST-ASNMSI-------EDLARQ--CDGDLWFQLYVIHREIAQGM 141 (380)
T ss_dssp SSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECT-TCSSCH-------HHHHHH--CCSCEEEEECCSSHHHHHHH
T ss_pred CCceEecCccccccCCCcHHHHHHHHHHHcCCCeecCc-cccCCH-------HHHHhc--cCCCeEEEEEechHHHHHHH
Confidence 67999999965 4 57778999999998776653 222221 112211 25789999974335555556
Q ss_pred HHhhCCc-CcEEE--------------eecCCCcc--ee-----------eccCccccc---cC---ChHHHHHHHHHHh
Q psy7343 222 AKLAEPH-CDGID--------------INIGCPQM--VA-----------KRGHYGAYL---QD---DWPLLTNLVSSLR 267 (487)
Q Consensus 222 a~~~~~~-~d~Id--------------iN~GcP~~--i~-----------~~gr~G~~l---~~---d~~~i~eiv~~v~ 267 (487)
.+.++++ +..+. +|.||+.. +. .....+..+ .. |++...+++++++
T Consensus 142 i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~ 221 (380)
T 1p4c_A 142 VLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLR 221 (380)
T ss_dssp HHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHHH
Confidence 6655554 55543 46677321 10 000111111 11 5666678888899
Q ss_pred hhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE--EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHH
Q psy7343 268 QAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLA 345 (487)
Q Consensus 268 ~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V--hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~ 345 (487)
+.+++||++|+ + ...+.++.+.++|+|+|.| ||++ +. ..+.++++.+.++++.+++|||++|||++.+
T Consensus 222 ~~~~~Pv~vkg-----v-~t~e~a~~a~~aGad~I~vs~~gg~--~~--d~~~~~~~~l~~v~~~~~~pVia~GGI~~~~ 291 (380)
T 1p4c_A 222 DLWPHKLLVKG-----L-LSAEDADRCIAEGADGVILSNHGGR--QL--DCAISPMEVLAQSVAKTGKPVLIDSGFRRGS 291 (380)
T ss_dssp HHCCSEEEEEE-----E-CCHHHHHHHHHTTCSEEEECCGGGT--SC--TTCCCGGGTHHHHHHHHCSCEEECSSCCSHH
T ss_pred HhcCCCEEEEe-----c-CcHHHHHHHHHcCCCEEEEcCCCCC--cC--CCCcCHHHHHHHHHHHcCCeEEEECCCCCHH
Confidence 99999999996 2 3466788999999999999 5443 32 3466789999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeccccccC
Q psy7343 346 DVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
|+.+++ ..|||+|++||+++..
T Consensus 292 dv~kal-~~GAdaV~iGr~~l~~ 313 (380)
T 1p4c_A 292 DIVKAL-ALGAEAVLLGRATLYG 313 (380)
T ss_dssp HHHHHH-HTTCSCEEESHHHHHH
T ss_pred HHHHHH-HhCCcHhhehHHHHHH
Confidence 999999 5899999999998753
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=145.29 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=131.5
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHh--cCCCCCCeeeeeccC----CHHHHHH
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILM--STPEDRPLIIQFCGN----DSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g~----d~~~~~~ 220 (487)
+.|++++||+++++..+...+.+.|+ +++.+++.. +++...+.++ ....+.|+.|+++.+ ++ .+.+
T Consensus 15 ~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~------s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~-~~~~ 87 (328)
T 2gjl_A 15 EHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQP------SPEALAAEIARCRELTDRPFGVNLTLLPTQKPV-PYAE 87 (328)
T ss_dssp SSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSS------SHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCC-CHHH
T ss_pred CCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCC------CHHHHHHHHHHHHHhcCCCeEEEEeccccccCc-cHHH
Confidence 56889999999999998888777774 555444322 1222222221 111257899998865 22 2444
Q ss_pred HHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCC
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~ 299 (487)
.++.+.+. .|.|.+|+|+| + ++++.+++. +++++.++ ...+.++.+++.|+
T Consensus 88 ~~~~~~~~g~d~V~~~~g~p----------------~----~~~~~l~~~-gi~vi~~v-------~t~~~a~~~~~~Ga 139 (328)
T 2gjl_A 88 YRAAIIEAGIRVVETAGNDP----------------G----EHIAEFRRH-GVKVIHKC-------TAVRHALKAERLGV 139 (328)
T ss_dssp HHHHHHHTTCCEEEEEESCC----------------H----HHHHHHHHT-TCEEEEEE-------SSHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCEEEEcCCCc----------------H----HHHHHHHHc-CCCEEeeC-------CCHHHHHHHHHcCC
Confidence 45544444 88888887775 1 233445544 78888775 33456677889999
Q ss_pred cEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 300 d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
|+|.++|++.....+.....+|+.++++++.+++||+++|||.+++++.+++ ..|||+|++||+++..+.
T Consensus 140 D~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~al-~~GAdgV~vGs~~~~~~e 209 (328)
T 2gjl_A 140 DAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAAL-ALGADAINMGTRFLATRE 209 (328)
T ss_dssp SEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH-HHTCSEEEESHHHHTSSS
T ss_pred CEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEECHHHHcCcc
Confidence 9999988754211011123688999999999999999999999999999999 589999999999999987
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=144.14 Aligned_cols=184 Identities=16% Similarity=0.208 Sum_probs=133.6
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHh--cCCCCCCeeeeeccCCHHHHHHHHHh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILM--STPEDRPLIIQFCGNDSKNLTEAAKL 224 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g~d~~~~~~aa~~ 224 (487)
+.|++++||+++++..+...+.+.|+ ++..+.+++. +...+.++ ....+.|+.|++...+++ +.+.++.
T Consensus 26 ~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~-------~~l~~~i~~i~~~~~~p~gVnl~~~~~~-~~~~~~~ 97 (326)
T 3bo9_A 26 EHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKP-------DDLRKAISELRQKTDKPFGVNIILVSPW-ADDLVKV 97 (326)
T ss_dssp SSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCH-------HHHHHHHHHHHTTCSSCEEEEEETTSTT-HHHHHHH
T ss_pred CCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCH-------HHHHHHHHHHHHhcCCCEEEEEeccCCC-HHHHHHH
Confidence 67999999999999999888888774 5555444433 22333332 122357999998864442 2334444
Q ss_pred hCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 225 AEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 225 ~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
+.+ ..|.|.+|.|+|. ++++.+++ .+++|+.++ ...+.++.+++.|+|+|.
T Consensus 98 ~~~~g~d~V~l~~g~p~--------------------~~~~~l~~-~g~~v~~~v-------~s~~~a~~a~~~GaD~i~ 149 (326)
T 3bo9_A 98 CIEEKVPVVTFGAGNPT--------------------KYIRELKE-NGTKVIPVV-------ASDSLARMVERAGADAVI 149 (326)
T ss_dssp HHHTTCSEEEEESSCCH--------------------HHHHHHHH-TTCEEEEEE-------SSHHHHHHHHHTTCSCEE
T ss_pred HHHCCCCEEEECCCCcH--------------------HHHHHHHH-cCCcEEEEc-------CCHHHHHHHHHcCCCEEE
Confidence 333 4888999888762 12333443 378888876 345667788899999999
Q ss_pred EEccccCCCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 304 VHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 304 VhgRt~~~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++|+... +..| ..+|+.+.++++.+++||+++|||.+.+|+.+++ ..|||+|++|++++..+..
T Consensus 150 v~g~~~G---G~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al-~~GA~gV~vGs~~~~~~e~ 214 (326)
T 3bo9_A 150 AEGMESG---GHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAF-ALGAEAVQMGTRFVASVES 214 (326)
T ss_dssp EECTTSS---EECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH-HHTCSEEEESHHHHTBSSC
T ss_pred EECCCCC---ccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHH-HhCCCEEEechHHHcCccc
Confidence 9987432 2323 4688999999999999999999999999999999 5899999999999998865
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-14 Score=145.40 Aligned_cols=192 Identities=19% Similarity=0.226 Sum_probs=131.6
Q ss_pred CCccccccccC-CCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCH-----HH---
Q psy7343 148 SPRFILAPMVD-ASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS-----KN--- 217 (487)
Q Consensus 148 ~~~~~lApma~-~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~-----~~--- 217 (487)
+.|++++||++ +++..+...+.+.|+ ++..+.+++...+.....+..+.+ +.|+.|+++...+ +.
T Consensus 10 ~~Pii~apMaggvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~~-----~~p~gVnl~~~~~~~~~~~~~~~ 84 (369)
T 3bw2_A 10 PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGLT-----GRPFGVNVFMPQPELAESGAVEV 84 (369)
T ss_dssp SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHHHHHC-----CSCEEEEEECCCCCC---CHHHH
T ss_pred cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHhC-----CCCeEEEEecCCCCcccHHHHHH
Confidence 56899999995 899999888888775 666666666555433332332222 3689999874322 11
Q ss_pred --------------------------HHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc
Q psy7343 218 --------------------------LTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270 (487)
Q Consensus 218 --------------------------~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~ 270 (487)
+.+.++.+.+. .+.|.+|+|+|. ++ +++.+++ .
T Consensus 85 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~---------------~~----~i~~~~~-~ 144 (369)
T 3bw2_A 85 YAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPD---------------RE----VIARLRR-A 144 (369)
T ss_dssp HHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCC---------------HH----HHHHHHH-T
T ss_pred HHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCc---------------HH----HHHHHHH-C
Confidence 22333333333 677777777642 22 3334444 3
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC-CCCC------C--CCCHHHHHHHHhhCCCcEEEcCCC
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-GMNT------G--LASWEHITAVRKALTIPVIANGNI 341 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g~~~------g--~~~~~~i~~i~~~~~iPVi~nGgI 341 (487)
+++|++++ ...+.++.+++.|+|+|.++|+..... +... + ...|+.++++++.+++||+++|||
T Consensus 145 g~~v~~~v-------~t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI 217 (369)
T 3bw2_A 145 GTLTLVTA-------TTPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGI 217 (369)
T ss_dssp TCEEEEEE-------SSHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSC
T ss_pred CCeEEEEC-------CCHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCC
Confidence 78888875 234457788899999999987643110 0000 1 224899999999999999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 342 QCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 342 ~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
.+++++.+++ ..|||+|++||+++.+|+..
T Consensus 218 ~~~~~~~~~l-~~GAd~V~vGs~~~~~~e~~ 247 (369)
T 3bw2_A 218 MRGGQIAAVL-AAGADAAQLGTAFLATDESG 247 (369)
T ss_dssp CSHHHHHHHH-HTTCSEEEESHHHHTSTTCC
T ss_pred CCHHHHHHHH-HcCCCEEEEChHHhCCcccC
Confidence 9999999999 58999999999999999874
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-14 Score=144.52 Aligned_cols=205 Identities=13% Similarity=0.109 Sum_probs=121.8
Q ss_pred CCccccccccCCCchH------HHHHHHHhCCccceeccccchhhhcChhHHH-HHHhcCCCCCCeeeeeccC-CHHHHH
Q psy7343 148 SPRFILAPMVDASELP------WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ-EILMSTPEDRPLIIQFCGN-DSKNLT 219 (487)
Q Consensus 148 ~~~~~lApma~~td~~------fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~-~~l~~~~~~~Pv~Vqi~g~-d~~~~~ 219 (487)
+.|++++||++.++.. ++..+++.|..++..++.. .+.+++... .+++.. .+.+++.+|... ..++..
T Consensus 86 ~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~---~le~~~~~~~~v~r~~-P~~~~ianig~~~~~e~~~ 161 (365)
T 3sr7_A 86 DFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYST---ALKNPDDTSYQVKKSR-PHLLLATNIGLDKPYQAGL 161 (365)
T ss_dssp SSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC---------------------------CCEEEEEETTSCHHHHH
T ss_pred cCceEeccccCCCcchhHHHHHHHHHHHHcCCCeecccccc---cccCccccceEehhhC-CCCcEEEEeCCCCCHHHHH
Confidence 6799999999887755 7788999996665443332 345554311 122322 467888888743 344444
Q ss_pred HHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCC
Q psy7343 220 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299 (487)
Q Consensus 220 ~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~ 299 (487)
++++.+. +|++.||+...+...... | ..+++...+.++++++.+++||++|+ ++.+ ...+.++.+.++|+
T Consensus 162 ~~ve~~~--adal~ihln~~qe~~~p~--G---d~~~~~~~~~I~~l~~~~~~PVivK~-vg~g--~s~e~A~~l~~aGa 231 (365)
T 3sr7_A 162 QAVRDLQ--PLFLQVHINLMQELLMPE--G---EREFRSWKKHLSDYAKKLQLPFILKE-VGFG--MDVKTIQTAIDLGV 231 (365)
T ss_dssp HHHHHHC--CSCEEEEECHHHHHTSSS--S---CCCCHHHHHHHHHHHHHCCSCEEEEE-CSSC--CCHHHHHHHHHHTC
T ss_pred HHHHhcC--CCEEEEeccccccccCCC--C---CCcHHHHHHHHHHHHHhhCCCEEEEE-CCCC--CCHHHHHHHHHcCC
Confidence 4554443 455555544322222111 1 23455566788889999999999995 3322 34577889999999
Q ss_pred cEEEEEccccCCCC-------------CCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 300 QLLAVHGRTVDQRG-------------MNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 300 d~I~VhgRt~~~~g-------------~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
|+|.|+|++..+.. ...|.+..+.+.+++... ++|||++|||++..|+.+++ ..|||+|++||++
T Consensus 232 d~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~KaL-alGAdaV~ig~~~ 310 (365)
T 3sr7_A 232 KTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKAL-VLGAKAVGLSRTM 310 (365)
T ss_dssp CEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHHHHH-HHTCSEEEESHHH
T ss_pred CEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH-HcCCCEEEECHHH
Confidence 99999776432210 011333446677665443 79999999999999999999 6999999999976
Q ss_pred cc
Q psy7343 366 LY 367 (487)
Q Consensus 366 l~ 367 (487)
+.
T Consensus 311 l~ 312 (365)
T 3sr7_A 311 LE 312 (365)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=137.56 Aligned_cols=180 Identities=16% Similarity=0.211 Sum_probs=125.4
Q ss_pred cccccCCCchHHHHHHH---HhCCcc-c-eeccccc-hhhhcChhHHHHHHhcC-CCCCCeeeeeccCCHHHHHHHHHhh
Q psy7343 153 LAPMVDASELPWRLLSR---RYGSHL-C-YTPMVSA-HQFIADKKLRQEILMST-PEDRPLIIQFCGNDSKNLTEAAKLA 225 (487)
Q Consensus 153 lApma~~td~~fr~i~~---~~Ga~l-~-~t~~v~~-~~Ll~~~~~~~~~l~~~-~~~~Pv~Vqi~g~d~~~~~~aa~~~ 225 (487)
+.|+ .|+.+++.+|. ++|++. | +..++.. ...+.+ +... ..+.|+.+|+.++.. .++.+.+
T Consensus 13 l~p~--~t~~~i~~l~~~a~~~g~~~v~v~~~~v~~~~~~l~~-------v~v~~v~~~P~g~~~~~~k~---~~~~~A~ 80 (225)
T 1mzh_A 13 LKPH--LSEKEIEEFVLKSEELGIYAVCVNPYHVKLASSIAKK-------VKVCCVIGFPLGLNKTSVKV---KEAVEAV 80 (225)
T ss_dssp CCTT--CCHHHHHHHHHHHHHTTCSEEEECGGGHHHHHHHCSS-------SEEEEEESTTTCCSCHHHHH---HHHHHHH
T ss_pred cCCC--CCHHHHHHHHHHHHHhCCeEEEECHHHHHHHHHHhcC-------CceeeEecCCCCccchhhhH---HHHHHHH
Confidence 4554 58889999988 688755 3 3334432 222220 0100 113455555544322 2233334
Q ss_pred CCcCcEEE--eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe---ecccccccHHHHHHHHHHcCCc
Q psy7343 226 EPHCDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI---RIYQDVNKTVEYARMLERAGCQ 300 (487)
Q Consensus 226 ~~~~d~Id--iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi---R~~~d~~~~~e~a~~le~~G~d 300 (487)
+..+|+|| +|+|| . +. .+++.+.+.++++++.++ |+++|+ +.+++.++..++++.++++|+|
T Consensus 81 ~~Gad~Id~viN~g~-~---~~--------~~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad 147 (225)
T 1mzh_A 81 RDGAQELDIVWNLSA-F---KS--------EKYDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGAD 147 (225)
T ss_dssp HTTCSEEEEECCHHH-H---HT--------TCHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCS
T ss_pred HcCCCEEEEEecHHH-H---hc--------CChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 45589999 89998 1 11 256777888999999888 999999 5556666788999999999999
Q ss_pred EEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 301 LLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 301 ~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+|.. +| + .+.|.++++.++.+++.+ ++||+++|||+|++|+.+++ +.|||.|.++++
T Consensus 148 ~I~t--st--g--~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l-~aGA~~iG~s~~ 206 (225)
T 1mzh_A 148 FIKT--ST--G--FAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMI-EAGADRIGTSSG 206 (225)
T ss_dssp EEEC--CC--S--CSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH-HTTCSEEEESCH
T ss_pred EEEE--CC--C--CCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHH-HhCchHHHHccH
Confidence 9933 33 2 245668999999999987 79999999999999999999 589998777764
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=135.20 Aligned_cols=181 Identities=13% Similarity=0.140 Sum_probs=124.7
Q ss_pred HHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceee
Q psy7343 165 RLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAK 244 (487)
Q Consensus 165 r~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~ 244 (487)
.....+.|++.+..-.+++ .+.+..+++.+. .++.+|+.|... .. ++.+++ . |+ ..+.
T Consensus 44 A~~~~~~Ga~~l~vvDL~~----~n~~~i~~i~~~----~~~pv~vgGGir-~~-~~~~~l--~--------Ga-~~Vi- 101 (260)
T 2agk_A 44 AKLYKDRDVQGCHVIKLGP----NNDDAAREALQE----SPQFLQVGGGIN-DT-NCLEWL--K--------WA-SKVI- 101 (260)
T ss_dssp HHHHHHTTCTTCEEEEESS----SCHHHHHHHHHH----STTTSEEESSCC-TT-THHHHT--T--------TC-SCEE-
T ss_pred HHHHHHcCCCEEEEEeCCC----CCHHHHHHHHhc----CCceEEEeCCCC-HH-HHHHHh--c--------CC-CEEE-
Confidence 3555667887665544454 344444554432 345566776443 23 666666 4 33 2333
Q ss_pred ccCccccccCC-----hHHHHHHHHHHh-hhccCcEEEEee---------cccccc---cHH-HHHHHHHHcCCcEEEEE
Q psy7343 245 RGHYGAYLQDD-----WPLLTNLVSSLR-QAVQVPVSCKIR---------IYQDVN---KTV-EYARMLERAGCQLLAVH 305 (487)
Q Consensus 245 ~gr~G~~l~~d-----~~~i~eiv~~v~-~~~~iPV~vKiR---------~~~d~~---~~~-e~a~~le~~G~d~I~Vh 305 (487)
.|+.+..| |+++.++++.+. +.+-+++.+|.+ .+|... +.. ++++.+++. ++.|.+|
T Consensus 102 ---igs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~t 177 (260)
T 2agk_A 102 ---VTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKY-TNEFLIH 177 (260)
T ss_dssp ---ECGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEEE
T ss_pred ---ECcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHh-cCEEEEE
Confidence 35555667 999999999987 544455555522 134332 456 999999999 9999999
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHhhC----CCcEEEcCCCCCHHHHHHHHHhc-CCcEEEecccc--ccCc-ccccC
Q psy7343 306 GRTVDQRGMNTGLASWEHITAVRKAL----TIPVIANGNIQCLADVEACLAQT-GVAGVMTAEGN--LYNP-ALFTG 374 (487)
Q Consensus 306 gRt~~~~g~~~g~~~~~~i~~i~~~~----~iPVi~nGgI~s~~da~~~l~~~-Gad~VmiGRa~--l~~P-~lf~~ 374 (487)
++++.+. +.|+ +|+.++++++.+ ++|||++|||.|++|+.++++.+ ||++||+||++ +.++ +.|.+
T Consensus 178 ~i~~dG~--~~G~-d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~ 251 (260)
T 2agk_A 178 AADVEGL--CGGI-DELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFED 251 (260)
T ss_dssp C---------CCC-CHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHH
T ss_pred eeccccC--cCCC-CHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHH
Confidence 9999876 6775 999999999999 99999999999999999999766 99999999997 8888 88763
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=135.07 Aligned_cols=203 Identities=18% Similarity=0.127 Sum_probs=137.5
Q ss_pred CCccccccccCCC------chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~t------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|+++||++... +....+.+.+.|.-. +.+..-... .+++.... .+.|...|+. -.|.+...+
T Consensus 69 ~~P~~iaP~g~~~l~~~~ge~~~araa~~~gi~~-----~lSt~ss~s---~e~v~~~~-~~~~~wfQlY~~~d~~~~~~ 139 (352)
T 3sgz_A 69 SAPICISPTAFHSIAWPDGEKSTARAAQEANICY-----VISSYASYS---LEDIVAAA-PEGFRWFQLYMKSDWDFNKQ 139 (352)
T ss_dssp SSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCEE-----EECTTCSSC---HHHHHHHS-TTCEEEEECCCCSCHHHHHH
T ss_pred CCcceechHHHHHhcCccHHHHHHHHHHHcCCCe-----EeCCCCCCC---HHHHHHhc-cCccceeccccCCCHHHHHH
Confidence 6799999987432 222345566667433 222111111 33343332 2468889987 457777778
Q ss_pred HHHhhCCc-CcEEEeecCCCcc-ee----ecc----------Cc--------ccc---ccCChHHHHHHHHHHhhhccCc
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQM-VA----KRG----------HY--------GAY---LQDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~-i~----~~g----------r~--------G~~---l~~d~~~i~eiv~~v~~~~~iP 273 (487)
..++++++ +.+|=+....|.. .. +++ .. ++. ..-|+....+.++++++.+++|
T Consensus 140 l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~lr~~~~~P 219 (352)
T 3sgz_A 140 MVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSITRLP 219 (352)
T ss_dssp HHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHHHHHHHCCSC
T ss_pred HHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHHHHHHhcCCC
Confidence 88888876 7776666655531 00 000 00 000 1124555566778888889999
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l 351 (487)
|++|+. ...+.++.++++|+|+|.|++++..+. ..+++.++.+.++++.+ ++|||++|||++.+|+.+++
T Consensus 220 vivK~v------~~~e~A~~a~~~GaD~I~vsn~GG~~~--d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaL 291 (352)
T 3sgz_A 220 IILKGI------LTKEDAELAMKHNVQGIVVSNHGGRQL--DEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKAL 291 (352)
T ss_dssp EEEEEE------CSHHHHHHHHHTTCSEEEECCGGGTSS--CSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH
T ss_pred EEEEec------CcHHHHHHHHHcCCCEEEEeCCCCCcc--CCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHH
Confidence 999974 235668899999999999977655443 44678899999998887 79999999999999999999
Q ss_pred HhcCCcEEEeccccccC
Q psy7343 352 AQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 352 ~~~Gad~VmiGRa~l~~ 368 (487)
..|||+||+||+++..
T Consensus 292 -alGA~aV~iGr~~l~~ 307 (352)
T 3sgz_A 292 -ALGARCIFLGRPILWG 307 (352)
T ss_dssp -HTTCSEEEESHHHHHH
T ss_pred -HcCCCEEEECHHHHHH
Confidence 6899999999987654
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=133.40 Aligned_cols=187 Identities=19% Similarity=0.188 Sum_probs=129.3
Q ss_pred CCccccccccCCCchHHHH-HHHHhCCccceeccccchhhhcChhHHHHHHh--cCCCCCCeeeeeccCCHHHHHHHHHh
Q psy7343 148 SPRFILAPMVDASELPWRL-LSRRYGSHLCYTPMVSAHQFIADKKLRQEILM--STPEDRPLIIQFCGNDSKNLTEAAKL 224 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~-i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g~d~~~~~~aa~~ 224 (487)
+.|++.+||.++++..+.. +++..|.++... . .+++...+.++ ....+.|+.+.+..++ .+.++.
T Consensus 45 ~~Pii~apM~~vt~~~lA~avA~~GGlgii~~-~-------~s~e~~~~~I~~vk~~~~~pvga~ig~~~----~e~a~~ 112 (361)
T 3khj_A 45 KIPLISSAMDTVTEHLMAVGMARLGGIGIIHK-N-------MDMESQVNEVLKVKNSGGLRVGAAIGVNE----IERAKL 112 (361)
T ss_dssp SSSEEECSSTTTCSHHHHHHHHHTTCEEEECS-S-------SCHHHHHHHHHHHHHTTCCCCEEEECTTC----HHHHHH
T ss_pred CCCEEeecCCCCCcHHHHHHHHHcCCCeEEec-C-------CCHHHHHHHHHHHHhccCceEEEEeCCCH----HHHHHH
Confidence 5689999999999988875 555666555432 1 12222222332 1224578999987554 333333
Q ss_pred -hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 225 -AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 225 -~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
++..+|.|.||.+. + +++.+.+.++.+++..++||+++. . ...+.++.++++|+|+|.
T Consensus 113 l~eaGad~I~ld~a~-------G--------~~~~~~~~i~~i~~~~~~~Vivg~-----v-~t~e~A~~l~~aGaD~I~ 171 (361)
T 3khj_A 113 LVEAGVDVIVLDSAH-------G--------HSLNIIRTLKEIKSKMNIDVIVGN-----V-VTEEATKELIENGADGIK 171 (361)
T ss_dssp HHHTTCSEEEECCSC-------C--------SBHHHHHHHHHHHHHCCCEEEEEE-----E-CSHHHHHHHHHTTCSEEE
T ss_pred HHHcCcCeEEEeCCC-------C--------CcHHHHHHHHHHHHhcCCcEEEcc-----C-CCHHHHHHHHHcCcCEEE
Confidence 34448888888553 1 456667778888888899999842 2 346678889999999999
Q ss_pred EEccc-------cCCCCCCCCCCCHHHHHHHHh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 304 VHGRT-------VDQRGMNTGLASWEHITAVRK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 304 VhgRt-------~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+ |-+ +... ..|.+.++.+.++++ .+++|||++|||.+.+|+.+++ ..|||+||+|++++..+.-
T Consensus 172 V-G~~~Gs~~~tr~~~--g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kal-a~GAd~V~vGs~~~~t~Es 245 (361)
T 3khj_A 172 V-GIGPGSICTTRIVA--GVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKAL-AVGASSVMIGSILAGTEES 245 (361)
T ss_dssp E-CSSCCTTCCHHHHT--CBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHH-HHTCSEEEESTTTTTBTTS
T ss_pred E-ecCCCcCCCccccc--CCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHH-HcCCCEEEEChhhhcCCcC
Confidence 9 421 1111 123456777777754 4589999999999999999999 6899999999999998754
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=9.2e-13 Score=137.07 Aligned_cols=141 Identities=21% Similarity=0.202 Sum_probs=101.0
Q ss_pred eeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeeccccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDV 284 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~ 284 (487)
+.+.+.. +++....+...++..+|.|+||.++ | +++.+.++++++++.+ ++||+++. .
T Consensus 144 ~~~~i~~-~~~~~~~a~~~~~~G~d~i~i~~~~----------g-----~~~~~~e~i~~ir~~~~~~pviv~~-----v 202 (404)
T 1eep_A 144 VGAAVSI-DIDTIERVEELVKAHVDILVIDSAH----------G-----HSTRIIELIKKIKTKYPNLDLIAGN-----I 202 (404)
T ss_dssp CEEEECS-CTTHHHHHHHHHHTTCSEEEECCSC----------C-----SSHHHHHHHHHHHHHCTTCEEEEEE-----E
T ss_pred EEEEeCC-ChhHHHHHHHHHHCCCCEEEEeCCC----------C-----ChHHHHHHHHHHHHHCCCCeEEEcC-----C
Confidence 4555543 2233333333444458999998654 1 4577888888999888 89999742 2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcc-------ccCCCCCCCCCCCHHHHHHHHh---hCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGR-------TVDQRGMNTGLASWEHITAVRK---ALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgR-------t~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
...+.++.++++|+|+|.+ |. +.... ..|.+.++.+.++++ ..++|||++|||.+++|+.+++ ..
T Consensus 203 -~~~~~a~~a~~~Gad~I~v-g~~~G~~~~~~~~~--~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~al-a~ 277 (404)
T 1eep_A 203 -VTKEAALDLISVGADCLKV-GIGPGSICTTRIVA--GVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAI-AA 277 (404)
T ss_dssp -CSHHHHHHHHTTTCSEEEE-CSSCSTTSHHHHHH--CCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHH-HH
T ss_pred -CcHHHHHHHHhcCCCEEEE-CCCCCcCcCccccC--CCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHH-Hc
Confidence 2357788899999999999 32 11111 124456777776665 5689999999999999999999 68
Q ss_pred CCcEEEeccccccCcccc
Q psy7343 355 GVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~lf 372 (487)
|||+|++||+++..|+..
T Consensus 278 GAd~V~iG~~~l~~~e~~ 295 (404)
T 1eep_A 278 GADSVMIGNLFAGTKESP 295 (404)
T ss_dssp TCSEEEECHHHHTBTTSS
T ss_pred CCCHHhhCHHHhcCCCCC
Confidence 999999999999998774
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.8e-13 Score=127.47 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=113.6
Q ss_pred HHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcC
Q psy7343 220 EAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG 298 (487)
Q Consensus 220 ~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G 298 (487)
+.|++++++ +.+|-..-+||..+...| |.+.+.||+.+.+ |++++++||+.|.|++. ..-++.+++.|
T Consensus 22 eqa~iae~aGa~av~~l~~~p~d~r~~g--Gv~Rm~dp~~I~~----I~~aVsIPVm~k~righ-----~~EAqilea~G 90 (291)
T 3o07_A 22 EQAKIAEKSGACAVMALESIPADMRKSG--KVCRMSDPKMIKD----IMNSVSIPVMAKVRIGH-----FVEAQIIEALE 90 (291)
T ss_dssp HHHHHHHHHTCSEEEECSSCHHHHHTTT--CCCCCCCHHHHHH----HHTTCSSCEEEEEETTC-----HHHHHHHHHTT
T ss_pred HHHHHHHHhCchhhhhccCCCchhhhcC--CccccCCHHHHHH----HHHhCCCCeEEEEecCc-----HHHHHHHHHcC
Confidence 456666666 788999999998765444 6677889998876 56788999999999873 44466777777
Q ss_pred CcEEEEEc-----------------------------------------cccCC----------------------CCCC
Q psy7343 299 CQLLAVHG-----------------------------------------RTVDQ----------------------RGMN 315 (487)
Q Consensus 299 ~d~I~Vhg-----------------------------------------Rt~~~----------------------~g~~ 315 (487)
+|.|.-+- ||... -.+|
T Consensus 91 aD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~ 170 (291)
T 3o07_A 91 VDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQL 170 (291)
T ss_dssp CSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence 77774321 11100 0012
Q ss_pred -----------CCCCCHHHHHHHHhhCCCcE--EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHH
Q psy7343 316 -----------TGLASWEHITAVRKALTIPV--IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWEL 382 (487)
Q Consensus 316 -----------~g~~~~~~i~~i~~~~~iPV--i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~ 382 (487)
.-.++|+.++++++..++|| |+||||.|++|+.+++ ++|||+||||||++..++. ...
T Consensus 171 ~t~~el~~~a~~~~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~l-e~GaDGVmVGrAI~~s~DP--------~~~ 241 (291)
T 3o07_A 171 KSEDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLM-QLGCDGVFVGSGIFKSSNP--------VRL 241 (291)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHH-HTTCSCEEECGGGGGSSCH--------HHH
T ss_pred CCHHHhhhcccccCCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHH-HhCCCEEEEchHHhCCCCH--------HHH
Confidence 11468999999999999998 5699999999999999 7999999999999985443 234
Q ss_pred HHHHHHHHHHcCh
Q psy7343 383 ASEYLDLVAQYPV 395 (487)
Q Consensus 383 ~~~~l~~~~~~~~ 395 (487)
.+.|.+.+..|.+
T Consensus 242 Akafv~Av~~~~~ 254 (291)
T 3o07_A 242 ATAVVEATTHFDN 254 (291)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHhccC
Confidence 5666666666643
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=141.58 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=110.7
Q ss_pred HHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee---------------------
Q psy7343 221 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR--------------------- 279 (487)
Q Consensus 221 aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR--------------------- 279 (487)
+.+.++..+|.|.||.+| ......-.-++.++.+++++.++.+..-+. .+-+.+..|
T Consensus 353 a~~~l~aGad~V~igt~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~-~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~ 430 (555)
T 1jvn_A 353 ASLYFRSGADKVSIGTDA-VYAAEKYYELGNRGDGTSPIETISKAYGAQ-AVVISVDPKRVYVNSQADTKNKVFETEYPG 430 (555)
T ss_dssp HHHHHHHTCSEEEECHHH-HHHHHHHHHTTSCCCSCSHHHHHHHHHCGG-GEEEEECEEEEEESSGGGCSSCCEECSSCC
T ss_pred HHHHHHcCCCEEEECCHH-hhCchhhccccccccCHHHHHHHHHHhCCC-cEEEEEEccccccccccccccccccccccC
Confidence 334444458999999887 321100000223467899999988865321 122222221
Q ss_pred -------------ccccc---ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCC
Q psy7343 280 -------------IYQDV---NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC 343 (487)
Q Consensus 280 -------------~~~d~---~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s 343 (487)
.||+. .+..++++.+++.|++.|++|++++.+. +.| .+|+.++++++.+++|||++|||.|
T Consensus 431 ~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~--~~G-~d~~li~~l~~~~~iPVIasGGi~s 507 (555)
T 1jvn_A 431 PNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGS--NSG-YDLELIEHVKDAVKIPVIASSGAGV 507 (555)
T ss_dssp TTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTT--CSC-CCHHHHHHHHHHCSSCEEECSCCCS
T ss_pred CCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCC--CCC-CCHHHHHHHHHhCCccEEEECCCCC
Confidence 13332 3578999999999999999999988876 666 5999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEeccccccCcccccC
Q psy7343 344 LADVEACLAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 344 ~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
.+|+.++++.+||++|++||+++.+++.|.+
T Consensus 508 ~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e 538 (555)
T 1jvn_A 508 PEHFEEAFLKTRADACLGAGMFHRGEFTVND 538 (555)
T ss_dssp HHHHHHHHHHSCCSEEEESHHHHTTSCCHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHcCCCCHHH
Confidence 9999999966899999999999999999863
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=123.69 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=111.2
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcE--------
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV-------- 274 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV-------- 274 (487)
+.|+.+..+-.++++..++.. ..+|.|-+ |+.++.+++.+.++++.+.....+.+
T Consensus 74 ~ipv~v~ggi~~~~~~~~~l~---~Gad~V~l--------------g~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~ 136 (244)
T 2y88_A 74 DVQVELSGGIRDDESLAAALA---TGCARVNV--------------GTAALENPQWCARVIGEHGDQVAVGLDVQIIDGE 136 (244)
T ss_dssp SSEEEEESSCCSHHHHHHHHH---TTCSEEEE--------------CHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTE
T ss_pred CCcEEEECCCCCHHHHHHHHH---cCCCEEEE--------------CchHhhChHHHHHHHHHcCCCEEEEEeccccCCC
Confidence 578888766667776443332 22333322 33334678888888887654332222
Q ss_pred -EEEeeccccc--ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH
Q psy7343 275 -SCKIRIYQDV--NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 275 -~vKiR~~~d~--~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l 351 (487)
.+++| +|.. .+..++++.+++.|++.|.+|+|++.+. +.| .+|+.++++++.+++||+++|||.+.+|+.+++
T Consensus 137 ~~v~~~-g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~--~~g-~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~ 212 (244)
T 2y88_A 137 HRLRGR-GWETDGGDLWDVLERLDSEGCSRFVVTDITKDGT--LGG-PNLDLLAGVADRTDAPVIASGGVSSLDDLRAIA 212 (244)
T ss_dssp EEEEEG-GGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTT--TSC-CCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHH
T ss_pred CEEEEC-CccCCCCCHHHHHHHHHhCCCCEEEEEecCCccc--cCC-CCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHH
Confidence 34455 4422 2678999999999999999999987654 445 489999999999999999999999999999999
Q ss_pred Hhc--CCcEEEeccccccCcccccC
Q psy7343 352 AQT--GVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 352 ~~~--Gad~VmiGRa~l~~P~lf~~ 374 (487)
+.+ |||+||+||+++.+|+.|.+
T Consensus 213 ~~~~~Gad~v~vG~al~~~~~~~~~ 237 (244)
T 2y88_A 213 TLTHRGVEGAIVGKALYARRFTLPQ 237 (244)
T ss_dssp TTGGGTEEEEEECHHHHTTSSCHHH
T ss_pred hhccCCCCEEEEcHHHHCCCcCHHH
Confidence 444 99999999999999998763
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-11 Score=121.95 Aligned_cols=187 Identities=16% Similarity=0.129 Sum_probs=123.5
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAE 226 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~ 226 (487)
+.|+++|||..+++..+...+.+.|. ++.. .. ...+...+.++.. ...+.+.+. +.+...+.++.+.
T Consensus 42 ~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~-~~-------~s~ee~~~~i~~~--~~~~~~~~g--~~~~~~e~~~~a~ 109 (361)
T 3r2g_A 42 NLPVISANMDTITESNMANFMHSKGAMGALH-RF-------MTIEENIQEFKKC--KGPVFVSVG--CTENELQRAEALR 109 (361)
T ss_dssp SSCEEECCSTTTCSHHHHHHHHHTTCEEBCC-SC-------SCHHHHHHHHHTC--CSCCBEEEC--SSHHHHHHHHHHH
T ss_pred CCCEEECCCCCchHHHHHHHHHHcCCCEEEe-CC-------CCHHHHHHHHhhc--ceEEEEEcC--CCHHHHHHHHHHH
Confidence 67999999999999999888778774 2222 11 2222233333221 123333332 3344555666555
Q ss_pred Cc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 227 PH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 227 ~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
++ +|.|.++..+. ..+.+.++++.+++.. ++||+++ ++ ...+.++.++++|+|+|.|
T Consensus 110 ~aGvdvI~id~a~G---------------~~~~~~e~I~~ir~~~~~~~Vi~G-----~V-~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 110 DAGADFFCVDVAHA---------------HAKYVGKTLKSLRQLLGSRCIMAG-----NV-ATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HTTCCEEEEECSCC---------------SSHHHHHHHHHHHHHHTTCEEEEE-----EE-CSHHHHHHHHHTTCSEEEE
T ss_pred HcCCCEEEEeCCCC---------------CcHhHHHHHHHHHHhcCCCeEEEc-----Cc-CCHHHHHHHHHcCCCEEEE
Confidence 54 88888875441 1234567778888876 7899995 22 3456688899999999999
Q ss_pred Ecccc-CCC----CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 305 HGRTV-DQR----GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 305 hgRt~-~~~----g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
|-.. ... ....+.+.++.+.++++... |||++|||.+..|+.+++ ..|||+||+||+++....
T Consensus 169 -g~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di~kAL-a~GAd~V~iGr~f~~t~E 236 (361)
T 3r2g_A 169 -GIGGGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDIVKAL-AFGADFVMIGGMLAGSAP 236 (361)
T ss_dssp -CCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHHHHHH-HTTCSEEEESGGGTTBTT
T ss_pred -cCCCCcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHHHHHH-HcCCCEEEEChHHhCCcc
Confidence 3111 000 00113456777777776666 999999999999999999 689999999999998854
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-11 Score=122.97 Aligned_cols=190 Identities=20% Similarity=0.190 Sum_probs=119.9
Q ss_pred CCccccccccCCCchHHHH-HHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHh-
Q psy7343 148 SPRFILAPMVDASELPWRL-LSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKL- 224 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~-i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~- 224 (487)
+.|++.+||.++++..+.. +++..|.++... . .+++...+.++......++.+.+. +.+++ +.+.++.
T Consensus 46 ~~Pii~apM~~vs~~~lA~avA~aGGlg~i~~-----~---~s~e~~~~~i~~vk~~~~l~vga~vg~~~~-~~~~~~~l 116 (366)
T 4fo4_A 46 NIPMVSASMDTVTEARLAIALAQEGGIGFIHK-----N---MSIEQQAAQVHQVKISGGLRVGAAVGAAPG-NEERVKAL 116 (366)
T ss_dssp SSSEEECCCTTTCSHHHHHHHHHTTCEEEECS-----S---SCHHHHHHHHHHHHTTTSCCCEEECCSCTT-CHHHHHHH
T ss_pred CCCEEeCCCCCCChHHHHHHHHHcCCceEeec-----C---CCHHHHHHHHHHHHhcCceeEEEEeccChh-HHHHHHHH
Confidence 5689999999999987764 444445343321 1 133333333321111123434432 22222 2333333
Q ss_pred hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 225 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 225 ~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
++..+|.|.||... + +++...+.++.+++.. ++||++. +. ...+.++.++++|+|+|.
T Consensus 117 ieaGvd~I~idta~-------G--------~~~~~~~~I~~ik~~~p~v~Vi~G-----~v-~t~e~A~~a~~aGAD~I~ 175 (366)
T 4fo4_A 117 VEAGVDVLLIDSSH-------G--------HSEGVLQRIRETRAAYPHLEIIGG-----NV-ATAEGARALIEAGVSAVK 175 (366)
T ss_dssp HHTTCSEEEEECSC-------T--------TSHHHHHHHHHHHHHCTTCEEEEE-----EE-CSHHHHHHHHHHTCSEEE
T ss_pred HhCCCCEEEEeCCC-------C--------CCHHHHHHHHHHHHhcCCCceEee-----ee-CCHHHHHHHHHcCCCEEE
Confidence 34447888777432 1 3455666777888776 7888773 22 345677888999999999
Q ss_pred EEcccc-------CCCCCCCCCCCHHHHHHHHh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 304 VHGRTV-------DQRGMNTGLASWEHITAVRK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 304 VhgRt~-------~~~g~~~g~~~~~~i~~i~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+ |-.. ... ..|.+.++.+.++++ .+++|||+.|||.+..|+.+++ ..|||+||+|+.++..+.-
T Consensus 176 v-G~gpGs~~~tr~~~--g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kal-a~GAd~V~vGs~f~~t~Es 249 (366)
T 4fo4_A 176 V-GIGPGSICTTRIVT--GVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAI-AAGASCVMVGSMFAGTEEA 249 (366)
T ss_dssp E-CSSCSTTBCHHHHH--CCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH-HTTCSEEEESTTTTTBTTS
T ss_pred E-ecCCCCCCCccccc--CcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEChHhhcCCCC
Confidence 9 4211 111 123456777777765 4689999999999999999999 6899999999999987653
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-11 Score=122.75 Aligned_cols=202 Identities=16% Similarity=0.151 Sum_probs=127.0
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccc----------------h--------hh------hc-ChhHHHH
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSA----------------H--------QF------IA-DKKLRQE 195 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~----------------~--------~L------l~-~~~~~~~ 195 (487)
+.|+++|||+++++..+...+.+.|. +++.++|+.. . .+ .. +++...+
T Consensus 67 ~~Pii~Apm~g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~ 146 (393)
T 2qr6_A 67 DLPFMNHPSDALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSE 146 (393)
T ss_dssp SSSEEECCCTTTCCHHHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCeEeCCCCCcccHHHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHH
Confidence 67999999999999887666666654 6666533110 0 00 11 4444444
Q ss_pred HHh-cCCCCCCeeeeeccCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCc
Q psy7343 196 ILM-STPEDRPLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 196 ~l~-~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iP 273 (487)
+++ ....+.++.+++.+.+..+.. +.+.+ ..|.+.+| +.|. ...+. +..+ +|+.+. ++++.+++|
T Consensus 147 ~i~~~~~~g~~v~~~v~~~~~~e~a---~~~~~agad~i~i~-~~~~-~~~~~--~~~~--~~~~i~----~l~~~~~~p 213 (393)
T 2qr6_A 147 RIAQVRDSGEIVAVRVSPQNVREIA---PIVIKAGADLLVIQ-GTLI-SAEHV--NTGG--EALNLK----EFIGSLDVP 213 (393)
T ss_dssp HHHHHHHTTSCCEEEECTTTHHHHH---HHHHHTTCSEEEEE-CSSC-CSSCC--CC-------CHH----HHHHHCSSC
T ss_pred HHHHHhhcCCeEEEEeCCccHHHHH---HHHHHCCCCEEEEe-CCcc-ccccC--CCcc--cHHHHH----HHHHhcCCC
Confidence 443 122367888888765544333 33323 36777776 3321 00111 1111 344333 456667999
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC--CCCCCCCHHHHHHHHhh-------CC---CcEEEcCCC
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG--MNTGLASWEHITAVRKA-------LT---IPVIANGNI 341 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g--~~~g~~~~~~i~~i~~~-------~~---iPVi~nGgI 341 (487)
|++++ +.+. +.++.+.++|+|+|+| |++..... ...|.+.++.+.++++. ++ +|||++|||
T Consensus 214 vi~gg-----i~t~-e~a~~~~~~Gad~i~v-g~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI 286 (393)
T 2qr6_A 214 VIAGG-----VNDY-TTALHMMRTGAVGIIV-GGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSI 286 (393)
T ss_dssp EEEEC-----CCSH-HHHHHHHTTTCSEEEE-SCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSC
T ss_pred EEECC-----cCCH-HHHHHHHHcCCCEEEE-CCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCC
Confidence 99963 4344 4467778899999999 66221000 01246677888877766 44 999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 342 QCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 342 ~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
++.+|+.+++ ..|||+|++||+++..+.
T Consensus 287 ~~~~dv~kal-alGA~~V~iG~~~l~~~e 314 (393)
T 2qr6_A 287 ENSGDVVKAI-ACGADAVVLGSPLARAEE 314 (393)
T ss_dssp CSHHHHHHHH-HHTCSEEEECGGGGGSTT
T ss_pred CCHHHHHHHH-HcCCCEEEECHHHHcCCC
Confidence 9999999999 689999999999998876
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.6e-11 Score=116.19 Aligned_cols=151 Identities=18% Similarity=0.232 Sum_probs=104.2
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEE---e-
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK---I- 278 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vK---i- 278 (487)
+.|+.+...-.++++..++.. ..+|.| .. |+....+++.+.++++.....+.+.+.++ +
T Consensus 75 ~ipv~v~ggI~~~~~~~~~l~---~Gad~V----------~l----g~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~ 137 (244)
T 1vzw_A 75 DIKVELSGGIRDDDTLAAALA---TGCTRV----------NL----GTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLR 137 (244)
T ss_dssp SSEEEEESSCCSHHHHHHHHH---TTCSEE----------EE----CHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEEC
T ss_pred CCcEEEECCcCCHHHHHHHHH---cCCCEE----------EE----CchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEE
Confidence 578888766567766433332 223333 22 33334578888888776543333333332 1
Q ss_pred eccccc--ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc--
Q psy7343 279 RIYQDV--NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT-- 354 (487)
Q Consensus 279 R~~~d~--~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~-- 354 (487)
+.+|+. .+..++++.+++.|++.|.+|++++.+. +.| .+|+.++++++.+++||+++|||++++|+.++++.+
T Consensus 138 ~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~--~~g-~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~ 214 (244)
T 1vzw_A 138 GRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGT--LQG-PNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPA 214 (244)
T ss_dssp CSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC---------C-CCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGG
T ss_pred EcCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccc--cCC-CCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccC
Confidence 113322 1678889999999999999998876543 344 489999999999999999999999999999999444
Q ss_pred CCcEEEeccccccCccccc
Q psy7343 355 GVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~lf~ 373 (487)
|||+|++|++++.+||.|.
T Consensus 215 Gadgv~vG~al~~~~~~~~ 233 (244)
T 1vzw_A 215 GVEGAIVGKALYAKAFTLE 233 (244)
T ss_dssp TEEEEEECHHHHTTSSCHH
T ss_pred CCceeeeeHHHHcCCCCHH
Confidence 9999999999999998865
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.8e-12 Score=124.67 Aligned_cols=160 Identities=23% Similarity=0.265 Sum_probs=108.6
Q ss_pred HHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc--------------
Q psy7343 219 TEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD-------------- 283 (487)
Q Consensus 219 ~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d-------------- 283 (487)
.+.|+.++++ +++|.... |..-..+...|.+++++++.+.++. +++++||+.|.|+|+.
T Consensus 27 ~e~A~~ae~aGA~aI~~l~--~v~~d~~~~~G~arm~~p~~i~~I~----~av~iPV~~K~rig~~~e~qilea~GaD~I 100 (330)
T 2yzr_A 27 VEQAQIAEEAGAVAVMALE--RVPADIRAAGGVARMSDPALIEEIM----DAVSIPVMAKCRIGHTTEALVLEAIGVDMI 100 (330)
T ss_dssp HHHHHHHHHHTCSEEEECS--SCHHHHC--CCCCCCCCHHHHHHHH----HHCSSCEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHcCCCEEEecC--CccccccCCcchhhcCCHHHHHHHH----HhcCCCeEEEEeecchHHHHHHHHcCCCEE
Confidence 4466666665 67773322 4432233334778899999988865 4679999999999762
Q ss_pred ----------c-----------------ccHHHHHHHHHHcCCcEEEEEc--------------cc------------cC
Q psy7343 284 ----------V-----------------NKTVEYARMLERAGCQLLAVHG--------------RT------------VD 310 (487)
Q Consensus 284 ----------~-----------------~~~~e~a~~le~~G~d~I~Vhg--------------Rt------------~~ 310 (487)
. .+..++++++ +.|++.|..|| |+ ..
T Consensus 101 d~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~~~s~~~~~ 179 (330)
T 2yzr_A 101 DESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDE 179 (330)
T ss_dssp EEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred ehhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHH-hcCcceeeccCCCCcccchhHHHHHHHHHHHHHHhccCCHH
Confidence 0 1366777777 78999999998 55 11
Q ss_pred CCC--CCCCCCCH-------------------------------------HHHHHHHhhCCCcE--EEcCCCCCHHHHHH
Q psy7343 311 QRG--MNTGLASW-------------------------------------EHITAVRKALTIPV--IANGNIQCLADVEA 349 (487)
Q Consensus 311 ~~g--~~~g~~~~-------------------------------------~~i~~i~~~~~iPV--i~nGgI~s~~da~~ 349 (487)
+.. .....++| +.++++++..++|| +++|||.|++|+.+
T Consensus 180 El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~~IPVV~VAeGGI~Tpeda~~ 259 (330)
T 2yzr_A 180 EVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLPVVNFAAGGVATPADAAL 259 (330)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHTSCSSEEEECSCCCSHHHHHH
T ss_pred HHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH
Confidence 110 00011233 88899999889999 69999999999999
Q ss_pred HHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 350 CLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 350 ~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
++ +.|||+|+||++++..++. .+..+++.+.+..|.
T Consensus 260 ~l-~~GaDgV~VGsaI~~a~dP--------~~aar~l~~ai~~~~ 295 (330)
T 2yzr_A 260 MM-QLGSDGVFVGSGIFKSENP--------LERARAIVEATYNYD 295 (330)
T ss_dssp HH-HTTCSCEEESHHHHTSSCH--------HHHHHHHHHHHHTTT
T ss_pred HH-HcCcCEEeeHHHHhcCCCH--------HHHHHHHHHHHHhcC
Confidence 99 5699999999999944322 123455555555554
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-10 Score=118.60 Aligned_cols=106 Identities=21% Similarity=0.257 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc-------ccCCCCCCCCCCCHHHHHHH
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR-------TVDQRGMNTGLASWEHITAV 327 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR-------t~~~~g~~~g~~~~~~i~~i 327 (487)
+++.+.++++.+++..++||+++ ++ ...+.++.++++|+|+|.+ |- ++... ..+.+++..+.++
T Consensus 168 ~~~~~~e~I~~ik~~~~i~Vi~g-----~V-~t~e~A~~a~~aGAD~I~v-G~g~Gs~~~tr~~~--g~g~p~~~al~~v 238 (400)
T 3ffs_A 168 HSLNIIRTLKEIKSKMNIDVIVG-----NV-VTEEATKELIENGADGIKV-GIGPGSICTTRIVA--GVGVPQITAIEKC 238 (400)
T ss_dssp SBHHHHHHHHHHHTTCCCEEEEE-----EE-CSHHHHHHHHHTTCSEEEE-CC---------CCS--CBCCCHHHHHHHH
T ss_pred CcccHHHHHHHHHhcCCCeEEEe-----ec-CCHHHHHHHHHcCCCEEEE-eCCCCcCccccccc--ccchhHHHHHHHH
Confidence 35666778888888889999974 22 4467788899999999999 42 22211 2245678888888
Q ss_pred Hhh---CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 328 RKA---LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 328 ~~~---~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
++. .++|||++|||.+.+|+.+++ ..|||+||+|++++..+.
T Consensus 239 ~~~~~~~~IPVIA~GGI~~~~di~kal-alGAd~V~vGt~f~~t~E 283 (400)
T 3ffs_A 239 SSVASKFGIPIIADGGIRYSGDIGKAL-AVGASSVMIGSILAGTEE 283 (400)
T ss_dssp HHHHTTTTCCEEEESCCCSHHHHHHHH-TTTCSEEEECGGGTTBTT
T ss_pred HHHHHhcCCCEEecCCCCCHHHHHHHH-HcCCCEEEEChHHhcCCC
Confidence 764 589999999999999999999 789999999999998764
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.9e-10 Score=109.22 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=107.1
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhh-hccCcEEEEe--
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ-AVQVPVSCKI-- 278 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~-~~~iPV~vKi-- 278 (487)
.+.|+++.=+-+++++..++... .+|+|-+ |..++.+++.+.++.+.... .+-+.+.++.
T Consensus 74 ~~iPvi~~Ggi~~~~~~~~~~~~---Gad~V~l--------------g~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~ 136 (252)
T 1ka9_F 74 VFIPLTVGGGVRSLEDARKLLLS---GADKVSV--------------NSAAVRRPELIRELADHFGAQAVVLAIDARWRG 136 (252)
T ss_dssp CCSCEEEESSCCSHHHHHHHHHH---TCSEEEE--------------CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEET
T ss_pred CCCCEEEECCcCCHHHHHHHHHc---CCCEEEE--------------ChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCC
Confidence 46788887555566654444331 2333322 33444678888887776532 1222333321
Q ss_pred ---e---ccccc---ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHH
Q psy7343 279 ---R---IYQDV---NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEA 349 (487)
Q Consensus 279 ---R---~~~d~---~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~ 349 (487)
+ .+|.. .+..+.++.+++.|++.|.+|++++.+. +.| .+|+.++++++.+++||+++|||.+++|+.+
T Consensus 137 g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~--~~g-~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~ 213 (252)
T 1ka9_F 137 DFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGT--KEG-YDLRLTRMVAEAVGVPVIASGGAGRMEHFLE 213 (252)
T ss_dssp TEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTT--CSC-CCHHHHHHHHHHCSSCEEEESCCCSHHHHHH
T ss_pred CCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEecccCCCC--cCC-CCHHHHHHHHHHcCCCEEEeCCCCCHHHHHH
Confidence 1 12322 3578899999999999999998766543 444 4899999999999999999999999999999
Q ss_pred HHHhcCCcEEEeccccccCccccc
Q psy7343 350 CLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 350 ~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
++ ++|||+|++|++++.+|+.+.
T Consensus 214 ~~-~~Gadgv~vgsal~~~~~~~~ 236 (252)
T 1ka9_F 214 AF-QAGAEAALAASVFHFGEIPIP 236 (252)
T ss_dssp HH-HTTCSEEEESHHHHTTSSCHH
T ss_pred HH-HCCCHHHHHHHHHHcCCCCHH
Confidence 99 699999999999999998765
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3e-10 Score=109.59 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=89.7
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEE---ee-ccccc---ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCK---IR-IYQDV---NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vK---iR-~~~d~---~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~ 321 (487)
|..++.+|+.+.++ +...+.+-+.+.++ +. .+|+. .+..++++.+++.|++.|.+|++++.+. +.| .+|
T Consensus 102 g~~~l~~p~~~~~~-~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~--~~g-~~~ 177 (241)
T 1qo2_A 102 SSKVLEDPSFLKSL-REIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGT--LQE-HDF 177 (241)
T ss_dssp CHHHHHCTTHHHHH-HTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHH--TCC-CCH
T ss_pred CchHhhChHHHHHH-HHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhCCCCEEEEEeeccccc--CCc-CCH
Confidence 44445678887776 54432221222221 11 13332 2678889999999999999999876543 444 489
Q ss_pred HHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc----C-CcEEEeccccccCccccc
Q psy7343 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQT----G-VAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 322 ~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~----G-ad~VmiGRa~l~~P~lf~ 373 (487)
+.++++++.+++|||++|||.+++|+.++++.+ | ||+|++|++++..+.-+.
T Consensus 178 ~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~ 234 (241)
T 1qo2_A 178 SLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVE 234 (241)
T ss_dssp HHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHH
T ss_pred HHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHH
Confidence 999999999999999999999999999999655 9 999999999998876543
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.13 E-value=7.5e-10 Score=107.28 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=106.7
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhh-hccCcEEEEe--
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ-AVQVPVSCKI-- 278 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~-~~~iPV~vKi-- 278 (487)
.+.|+.+.-+-.++++..++.+ ..+|+|-+ |.....+++.+.++++.+.. .+.+.+.++.
T Consensus 73 ~~ipvi~~ggI~~~~~~~~~~~---~Gad~V~l--------------g~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~ 135 (253)
T 1thf_D 73 IDIPFTVGGGIHDFETASELIL---RGADKVSI--------------NTAAVENPSLITQIAQTFGSQAVVVAIDAKRVD 135 (253)
T ss_dssp CCSCEEEESSCCSHHHHHHHHH---TTCSEEEE--------------SHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEET
T ss_pred CCCCEEEeCCCCCHHHHHHHHH---cCCCEEEE--------------ChHHHhChHHHHHHHHHcCCCcEEEEEEEEccC
Confidence 4678888765567766444432 22333322 33334578888887776532 2222333321
Q ss_pred ---e---ccccc---ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHH
Q psy7343 279 ---R---IYQDV---NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEA 349 (487)
Q Consensus 279 ---R---~~~d~---~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~ 349 (487)
. .+|.. .+..+.++.+++.|++.|.+|++++.+. +.| .+|+.++++++.+++||+++|||.+.+|+.+
T Consensus 136 g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~--~~g-~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~ 212 (253)
T 1thf_D 136 GEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT--KSG-YDTEMIRFVRPLTTLPIIASGGAGKMEHFLE 212 (253)
T ss_dssp TEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTS--CSC-CCHHHHHHHGGGCCSCEEEESCCCSHHHHHH
T ss_pred CcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCC--CCC-CCHHHHHHHHHhcCCCEEEECCCCCHHHHHH
Confidence 1 12222 2578889999999999999998776543 444 4899999999999999999999999999999
Q ss_pred HHHhcCCcEEEeccccccCccccc
Q psy7343 350 CLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 350 ~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
++ ++|||+|++|++++.+|+.+.
T Consensus 213 ~~-~~Gadgv~vGsal~~~~~~~~ 235 (253)
T 1thf_D 213 AF-LAGADAALAASVFHFREIDVR 235 (253)
T ss_dssp HH-HTTCSEEEESHHHHTTCSCHH
T ss_pred HH-HcCChHHHHHHHHHcCCCCHH
Confidence 99 699999999999999987654
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.8e-10 Score=108.03 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+..++++.+++.|++.|.+|++++.+. +.| .+++.++++++.+++||+++|||.+++|+.+++ ++|||+|++|+++
T Consensus 157 ~~~e~~~~~~~~G~~~i~~t~~~~~g~--~~g-~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~-~~Gadgv~vgsal 232 (266)
T 2w6r_A 157 LLRDWVVEVEKRGAGEILLTSIDRDGT--KSG-YDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADAALAASVF 232 (266)
T ss_dssp EHHHHHHHHHHTTCSEEEEEETTTTTT--CSC-CCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH-HHTCSEEEESTTT
T ss_pred hHHHHHHHHHHcCCCEEEEEeecCCCC--cCC-CCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH-HcCCHHHHccHHH
Confidence 578889999999999999988766543 444 489999999999999999999999999999999 6899999999999
Q ss_pred ccCcccccCC
Q psy7343 366 LYNPALFTGQ 375 (487)
Q Consensus 366 l~~P~lf~~~ 375 (487)
+.+|+.+.+.
T Consensus 233 ~~~~~~~~~~ 242 (266)
T 2w6r_A 233 HFREIDMREL 242 (266)
T ss_dssp C---------
T ss_pred HcCCCCHHHH
Confidence 9999887653
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-10 Score=114.28 Aligned_cols=208 Identities=11% Similarity=0.052 Sum_probs=129.4
Q ss_pred CCceEEecCCCC-C-CHHHHHHHHHcCCCeEEccceeccccccCc----------------------HHHHHHhhhC--C
Q psy7343 78 SPRFILAPMVDA-S-ELPWRLLSRRYGSHLCYTPMVSAHQFIADK----------------------KLRQEILMST--P 131 (487)
Q Consensus 78 ~~~~~LAPMag~-t-d~pFR~l~~~~Gadl~~TEMi~a~~l~~~~----------------------~~~~~~~~~~--~ 131 (487)
++++++|+ |+ + |..|+..+.+.|+++++|+|++.+...... ....+.+... .
T Consensus 12 ~npv~~Aa--g~~~~~~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~~ 89 (311)
T 1jub_A 12 ANPFMNAS--GVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKE 89 (311)
T ss_dssp SSSEEECT--TSSCSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHHHHH
T ss_pred CCCcEECC--CCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHHHHHHHHHHh
Confidence 77899996 65 4 899999999999999999999988642111 1111112111 1
Q ss_pred C--CCceeeeeccccCCCCCccccccccCCCchHHH---HHHHHhCCc-cc----eeccc-cchhhhcChhHHHHHHh--
Q psy7343 132 E--DRPLIIQRTIFPRLGSPRFILAPMVDASELPWR---LLSRRYGSH-LC----YTPMV-SAHQFIADKKLRQEILM-- 198 (487)
Q Consensus 132 ~--e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr---~i~~~~Ga~-l~----~t~~v-~~~~Ll~~~~~~~~~l~-- 198 (487)
. +.|+++|+. +..+ ..|. ....+.|++ .. .+|.. .++.+..+++...++++
T Consensus 90 ~~~~~p~~~~i~-----g~~~-----------~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~v 153 (311)
T 1jub_A 90 NAQEGPIFFSIA-----GMSA-----------AENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEV 153 (311)
T ss_dssp TCSSSCCEEEEC-----CSSH-----------HHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHH
T ss_pred cCCCCCEEEEcC-----CCCH-----------HHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHH
Confidence 2 678888963 1111 1122 222334544 21 11222 23455567777777775
Q ss_pred cCCCCCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeec---c--------Cccc-cccCChHHHHHHHH
Q psy7343 199 STPEDRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR---G--------HYGA-YLQDDWPLLTNLVS 264 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~---g--------r~G~-~l~~d~~~i~eiv~ 264 (487)
....+.||++|+.. .+.+++.++++.++++ .|+|.++.........+ . .+|+ ..........+.++
T Consensus 154 r~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~ 233 (311)
T 1jub_A 154 FTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVR 233 (311)
T ss_dssp TTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHH
T ss_pred HHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHH
Confidence 22337899999984 4777888889999887 88888763320000000 0 0111 01112233456777
Q ss_pred HHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 265 SLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 265 ~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
.+++.+ ++||++.+ ++.+..++.+.+ .+|||+|++ ||.-
T Consensus 234 ~v~~~~~~~ipvi~~G----GI~~~~da~~~l-~~GAd~V~v-g~~~ 274 (311)
T 1jub_A 234 AFYTRLKPEIQIIGTG----GIETGQDAFEHL-LCGATMLQI-GTAL 274 (311)
T ss_dssp HHHTTSCTTSEEEEES----SCCSHHHHHHHH-HHTCSEEEE-CHHH
T ss_pred HHHHhcCCCCCEEEEC----CCCCHHHHHHHH-HcCCCEEEE-chHH
Confidence 788888 89999998 788899999888 579999999 8753
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-09 Score=116.60 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=98.7
Q ss_pred HHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHH
Q psy7343 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARML 294 (487)
Q Consensus 216 ~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~l 294 (487)
+....+...++..+|.|+||.+| | +++...++++++++.+ ++||+++ ++ ...+.++.+
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~~----------G-----~~~~~~~~i~~i~~~~~~~pvi~~-----~v-~t~~~a~~l 313 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSSQ----------G-----NSVYQIAMVHYIKQKYPHLQVIGG-----NV-VTAAQAKNL 313 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCSC----------C-----CSHHHHHHHHHHHHHCTTCEEEEE-----EE-CSHHHHHHH
T ss_pred hhHHHHHHHHHcCCCEEEeeccC----------C-----cchhHHHHHHHHHHhCCCCceEec-----cc-chHHHHHHH
Confidence 33334444444448999998776 1 2355667888888888 8999985 22 346678899
Q ss_pred HHcCCcEEEEEccc-------cCCCCC-CCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 295 ERAGCQLLAVHGRT-------VDQRGM-NTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 295 e~~G~d~I~VhgRt-------~~~~g~-~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+++|+|+|.+ |.. +...++ ......+..+.++++.+++|||++|||+++.|+.+++ ..|||+||+||+++
T Consensus 314 ~~aGad~I~v-g~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kal-a~GAd~V~iG~~~l 391 (514)
T 1jcn_A 314 IDAGVDGLRV-GMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKAL-ALGASTVMMGSLLA 391 (514)
T ss_dssp HHHTCSEEEE-CSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH-HTTCSEEEESTTTT
T ss_pred HHcCCCEEEE-CCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHH-HcCCCeeeECHHHH
Confidence 9999999999 421 111110 0012245778888888899999999999999999999 68999999999999
Q ss_pred cCccccc
Q psy7343 367 YNPALFT 373 (487)
Q Consensus 367 ~~P~lf~ 373 (487)
.+|+...
T Consensus 392 ~~~e~~~ 398 (514)
T 1jcn_A 392 ATTEAPG 398 (514)
T ss_dssp TSTTSSC
T ss_pred cCCcCCc
Confidence 9987654
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.8e-09 Score=105.78 Aligned_cols=190 Identities=16% Similarity=0.177 Sum_probs=118.0
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCC-CCeeeeeccCCHHHHHHHHHhh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPED-RPLIIQFCGNDSKNLTEAAKLA 225 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~-~Pv~Vqi~g~d~~~~~~aa~~~ 225 (487)
+.|++.+||.+.++..+...+.+.|. +++.. . ...+.....++..+.. .++.+.+ +...+.+..+..++
T Consensus 57 ~~PIi~ApM~~~~~~~lA~Ava~~Gglg~i~~-----~---~s~e~~~~~i~~~p~~l~~v~~~~-g~~~~~~~~~~~l~ 127 (351)
T 2c6q_A 57 GVPIIAANMDTVGTFEMAKVLCKFSLFTAVHK-----H---YSLVQWQEFAGQNPDCLEHLAASS-GTGSSDFEQLEQIL 127 (351)
T ss_dssp ECCEEECSSTTTSCHHHHHHHHHTTCEEECCT-----T---CCHHHHHHHHHHCGGGCTTEEEEE-CSSHHHHHHHHHHH
T ss_pred cCCEEECCCCCCCcHHHHHHHHHCCCEEEEcC-----C---CCHHHHHHHHhhCchhhheeEeec-CCChHHHHHHHHHH
Confidence 56899999999988777665666652 33221 1 1111121222211111 2455555 33455555555555
Q ss_pred CC--cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEE
Q psy7343 226 EP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLL 302 (487)
Q Consensus 226 ~~--~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I 302 (487)
+. ..+.|.++... | ++..+.+.++++++.. ++||+++. +.+ .+.++.+.++|+|+|
T Consensus 128 ~~~~g~~~i~i~~~~----------g-----~~~~~~~~i~~lr~~~~~~~vi~g~-----v~t-~e~A~~a~~aGaD~I 186 (351)
T 2c6q_A 128 EAIPQVKYICLDVAN----------G-----YSEHFVEFVKDVRKRFPQHTIMAGN-----VVT-GEMVEELILSGADII 186 (351)
T ss_dssp HHCTTCCEEEEECSC----------T-----TBHHHHHHHHHHHHHCTTSEEEEEE-----ECS-HHHHHHHHHTTCSEE
T ss_pred hccCCCCEEEEEecC----------C-----CcHHHHHHHHHHHHhcCCCeEEEEe-----CCC-HHHHHHHHHhCCCEE
Confidence 43 35666665321 1 3455667788888888 89999863 323 566788999999999
Q ss_pred EEEcccc-----CCCCCCCCCCCHHHHHHHH---hhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 303 AVHGRTV-----DQRGMNTGLASWEHITAVR---KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 303 ~VhgRt~-----~~~g~~~g~~~~~~i~~i~---~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
.|..... .+.. -.+.+....+.++. +..++|||+.|||.++.|+.+++ ..|||+|++||.++..+
T Consensus 187 ~v~~g~G~~~~~r~~~-g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAl-alGA~~V~vG~~fl~~~ 259 (351)
T 2c6q_A 187 KVGIGPGSVCTTRKKT-GVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAF-GAGADFVMLGGMLAGHS 259 (351)
T ss_dssp EECSSCSTTBCHHHHH-CBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHH-HTTCSEEEESTTTTTBT
T ss_pred EECCCCCcCcCccccC-CCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHH-HcCCCceeccHHHhcCc
Confidence 8831110 0000 01234455555554 34589999999999999999999 78999999999998753
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.04 E-value=8.1e-10 Score=117.62 Aligned_cols=130 Identities=23% Similarity=0.209 Sum_probs=95.7
Q ss_pred HHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHH
Q psy7343 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARML 294 (487)
Q Consensus 216 ~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~l 294 (487)
+.+..+..+++..+|.|+||.+|| +.+.+.++++++++.. ++||++. ++ ...+.++.+
T Consensus 231 d~~~~a~~l~~aG~d~I~id~a~g---------------~~~~~~~~i~~ir~~~p~~~Vi~g-----~v-~t~e~a~~l 289 (496)
T 4fxs_A 231 GNEERVKALVEAGVDVLLIDSSHG---------------HSEGVLQRIRETRAAYPHLEIIGG-----NV-ATAEGARAL 289 (496)
T ss_dssp CCHHHHHHHHHTTCSEEEEECSCT---------------TSHHHHHHHHHHHHHCTTCCEEEE-----EE-CSHHHHHHH
T ss_pred chHHHHHHHHhccCceEEeccccc---------------cchHHHHHHHHHHHHCCCceEEEc-----cc-CcHHHHHHH
Confidence 334444445555699999998874 2345667788888887 7899884 22 345677889
Q ss_pred HHcCCcEEEEEc------cccCCCCCCCCCCCHHHHHHHHhh---CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 295 ERAGCQLLAVHG------RTVDQRGMNTGLASWEHITAVRKA---LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 295 e~~G~d~I~Vhg------Rt~~~~g~~~g~~~~~~i~~i~~~---~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
.++|+|+|.|.+ .++... ..|.+++..+.++.+. .++|||++|||.+++|+.+++ ..|||+||+|+++
T Consensus 290 ~~aGaD~I~Vg~g~Gs~~~tr~~~--g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kal-a~GAd~V~iGs~f 366 (496)
T 4fxs_A 290 IEAGVSAVKVGIGPGSICTTRIVT--GVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAI-AAGASCVMVGSMF 366 (496)
T ss_dssp HHHTCSEEEECSSCCTTBCHHHHH--CCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH-HTTCSEEEESTTT
T ss_pred HHhCCCEEEECCCCCcCccccccc--CCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHH-HcCCCeEEecHHH
Confidence 999999999821 111111 1245678888887764 479999999999999999999 6799999999998
Q ss_pred ccCc
Q psy7343 366 LYNP 369 (487)
Q Consensus 366 l~~P 369 (487)
+.-.
T Consensus 367 ~~t~ 370 (496)
T 4fxs_A 367 AGTE 370 (496)
T ss_dssp TTBT
T ss_pred hcCC
Confidence 8754
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=115.97 Aligned_cols=134 Identities=22% Similarity=0.252 Sum_probs=98.5
Q ss_pred cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHH
Q psy7343 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~ 290 (487)
|...+.+..+..+++..+|.|.||.+|+ +...+.+.++.+++.. ++||++. +. ...+.
T Consensus 225 G~~~~~~~~a~~l~~aG~d~I~id~a~g---------------~~~~~~~~v~~i~~~~p~~~Vi~g-----~v-~t~e~ 283 (490)
T 4avf_A 225 GTGADTGERVAALVAAGVDVVVVDTAHG---------------HSKGVIERVRWVKQTFPDVQVIGG-----NI-ATAEA 283 (490)
T ss_dssp CSSTTHHHHHHHHHHTTCSEEEEECSCC---------------SBHHHHHHHHHHHHHCTTSEEEEE-----EE-CSHHH
T ss_pred ccccchHHHHHHHhhcccceEEecccCC---------------cchhHHHHHHHHHHHCCCceEEEe-----ee-CcHHH
Confidence 3344444555555555689999997773 2345667788888887 7898885 22 34566
Q ss_pred HHHHHHcCCcEEEEEccc-------cCCCCCCCCCCCHHHHHHHHhhC---CCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 291 ARMLERAGCQLLAVHGRT-------VDQRGMNTGLASWEHITAVRKAL---TIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt-------~~~~g~~~g~~~~~~i~~i~~~~---~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
++.+.++|+|+|.| |-+ +... ..|.++++.+.++++.+ ++|||++|||.+.+|+.+++ ..|||+||
T Consensus 284 a~~l~~aGaD~I~v-g~g~Gs~~~t~~~~--g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal-~~GAd~V~ 359 (490)
T 4avf_A 284 AKALAEAGADAVKV-GIGPGSICTTRIVA--GVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAM-VAGAYCVM 359 (490)
T ss_dssp HHHHHHTTCSEEEE-CSSCSTTCHHHHHT--CBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHH-HHTCSEEE
T ss_pred HHHHHHcCCCEEEE-CCCCCcCCCccccC--CCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHH-HcCCCeee
Confidence 78899999999998 422 1111 13456788888887754 79999999999999999999 68999999
Q ss_pred eccccccCcc
Q psy7343 361 TAEGNLYNPA 370 (487)
Q Consensus 361 iGRa~l~~P~ 370 (487)
+|++++....
T Consensus 360 vGs~~~~~~E 369 (490)
T 4avf_A 360 MGSMFAGTEE 369 (490)
T ss_dssp ECTTTTTBTT
T ss_pred ecHHHhcCCC
Confidence 9999988643
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-09 Score=103.90 Aligned_cols=105 Identities=22% Similarity=0.263 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEE--ccccCCCCCCCCCCCHHHHHHHHhhCCCc
Q psy7343 258 LLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVH--GRTVDQRGMNTGLASWEHITAVRKALTIP 334 (487)
Q Consensus 258 ~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vh--gRt~~~~g~~~g~~~~~~i~~i~~~~~iP 334 (487)
.+.++++.+++.+ +.++.++. .+..+ +..+++.|+|.|++. |.|....+......+++.++++++.+++|
T Consensus 105 ~~~~~i~~~~~~~~~~~v~~~~------~t~~e-~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ip 177 (223)
T 1y0e_A 105 TLDELVSYIRTHAPNVEIMADI------ATVEE-AKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAK 177 (223)
T ss_dssp CHHHHHHHHHHHCTTSEEEEEC------SSHHH-HHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSE
T ss_pred CHHHHHHHHHHhCCCceEEecC------CCHHH-HHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCC
Confidence 4567777777765 66676654 23334 566889999999873 33332221111334678999999999999
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
|+++|||.|.+++.+++ +.|||+|++||+++. |+.
T Consensus 178 via~GGI~~~~~~~~~~-~~Gad~v~vG~al~~-p~~ 212 (223)
T 1y0e_A 178 VIAEGNVITPDMYKRVM-DLGVHCSVVGGAITR-PKE 212 (223)
T ss_dssp EEEESSCCSHHHHHHHH-HTTCSEEEECHHHHC-HHH
T ss_pred EEEecCCCCHHHHHHHH-HcCCCEEEEChHHcC-cHH
Confidence 99999999999999999 579999999999665 654
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=5.2e-09 Score=100.61 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=104.6
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhh-hc----cC-----
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ-AV----QV----- 272 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~-~~----~i----- 272 (487)
+.|+.+.-.-.++++..++.+ ..+|+|.++. .+..+++.+.++.+.... .+ +.
T Consensus 77 ~ipvi~~g~i~~~~~~~~~~~---~Gad~V~i~~--------------~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g 139 (253)
T 1h5y_A 77 SIPVLVGGGVRSLEDATTLFR---AGADKVSVNT--------------AAVRNPQLVALLAREFGSQSTVVAIDAKWNGE 139 (253)
T ss_dssp SSCEEEESSCCSHHHHHHHHH---HTCSEEEESH--------------HHHHCTHHHHHHHHHHCGGGEEEEEEEEECSS
T ss_pred CCCEEEECCCCCHHHHHHHHH---cCCCEEEECh--------------HHhhCcHHHHHHHHHcCCCcEEEEEEeecCCC
Confidence 578887766567766544333 2356665541 123467777776665431 11 11
Q ss_pred cEEEEeecccc--cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 273 PVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 273 PV~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
++.++.|.+.+ ..+..+.++.+++.|+|.|.+|+++..+. ..+ .+++.++++++.+++||+++|||.+.+|+.++
T Consensus 140 ~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~--~~~-~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~ 216 (253)
T 1h5y_A 140 YYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT--GLG-YDVELIRRVADSVRIPVIASGGAGRVEHFYEA 216 (253)
T ss_dssp SEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTT--CSC-CCHHHHHHHHHHCSSCEEEESCCCSHHHHHHH
T ss_pred cEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCC--cCc-CCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHH
Confidence 13444443321 23678889999999999999998876443 233 47999999999999999999999999999999
Q ss_pred HHhcCCcEEEeccccccCccc
Q psy7343 351 LAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~l 371 (487)
+ +.|||+|++|++++.+++-
T Consensus 217 ~-~~Ga~~v~vgsal~~~~~~ 236 (253)
T 1h5y_A 217 A-AAGADAVLAASLFHFRVLS 236 (253)
T ss_dssp H-HTTCSEEEESHHHHTTSSC
T ss_pred H-HcCCcHHHHHHHHHcCCCC
Confidence 9 6899999999999887644
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-09 Score=101.50 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEE--EEEccccCCCCCCCCCCCHHHHHHHHhhCCCc
Q psy7343 258 LLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLL--AVHGRTVDQRGMNTGLASWEHITAVRKALTIP 334 (487)
Q Consensus 258 ~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I--~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP 334 (487)
.+.++++.+++.. +.++.++. .+ .+.++.+.+.|+|.| .++|.+.... .+ ...+++.++++++. ++|
T Consensus 119 ~~~~~i~~i~~~~~~~~v~~~~------~t-~~ea~~a~~~Gad~i~~~v~g~~~~~~-~~-~~~~~~~i~~~~~~-~ip 188 (234)
T 1yxy_A 119 DIASFIRQVKEKYPNQLLMADI------ST-FDEGLVAHQAGIDFVGTTLSGYTPYSR-QE-AGPDVALIEALCKA-GIA 188 (234)
T ss_dssp CHHHHHHHHHHHCTTCEEEEEC------SS-HHHHHHHHHTTCSEEECTTTTSSTTSC-CS-SSCCHHHHHHHHHT-TCC
T ss_pred cHHHHHHHHHHhCCCCeEEEeC------CC-HHHHHHHHHcCCCEEeeeccccCCCCc-CC-CCCCHHHHHHHHhC-CCC
Confidence 4466777777765 66777664 22 344677889999999 6766643221 12 23578999999988 999
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
|+++|||+|.+++.+++ +.|||+|++|++++.
T Consensus 189 via~GGI~s~~~~~~~~-~~Gad~v~vGsal~~ 220 (234)
T 1yxy_A 189 VIAEGKIHSPEEAKKIN-DLGVAGIVVGGAITR 220 (234)
T ss_dssp EEEESCCCSHHHHHHHH-TTCCSEEEECHHHHC
T ss_pred EEEECCCCCHHHHHHHH-HCCCCEEEEchHHhC
Confidence 99999999999999999 689999999999876
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=98.93 E-value=8.2e-09 Score=101.25 Aligned_cols=192 Identities=14% Similarity=0.144 Sum_probs=119.9
Q ss_pred CCccccccccCCCchH-HHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCC-----H--HH-H
Q psy7343 148 SPRFILAPMVDASELP-WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGND-----S--KN-L 218 (487)
Q Consensus 148 ~~~~~lApma~~td~~-fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d-----~--~~-~ 218 (487)
+.++.++||++..+.. .-....+.|++.+.+.. .+ .....+....+.|+++++.... + +. .
T Consensus 33 d~~~~l~p~~~~~~~~~~~~~~~~~g~~~i~~~~----~~------~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~~ 102 (273)
T 2qjg_A 33 DHGVSNGPIKGLIDIRKTVNDVAEGGANAVLLHK----GI------VRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVIV 102 (273)
T ss_dssp CHHHHHCSCTTSSSHHHHHHHHHHHTCSEEEECH----HH------HHSCCCSSSCCCEEEEECEECCTTSSSTTCCEEC
T ss_pred ccccccCCCcchhhHHHHHHHHHhcCCCEEEeCH----HH------HHHHHHhhcCCCCEEEEEcCCCcCCCCcccchHH
Confidence 5567789998888764 22344567875533211 11 1111111223578889987433 1 11 1
Q ss_pred HHHHHhhCCcCcEE--EeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec-c------cccccHHH
Q psy7343 219 TEAAKLAEPHCDGI--DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI-Y------QDVNKTVE 289 (487)
Q Consensus 219 ~~aa~~~~~~~d~I--diN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~-~------~d~~~~~e 289 (487)
.++.+.++..++.| .+|.|++. ... ..+.+.++++..+ ..++|+++..-. | .+..+..+
T Consensus 103 ~~v~~a~~~Ga~~v~~~l~~~~~~--------~~~---~~~~~~~v~~~~~-~~g~~viv~~~~~G~~l~~~~~~~~~~~ 170 (273)
T 2qjg_A 103 TTVEEAIRMGADAVSIHVNVGSDE--------DWE---AYRDLGMIAETCE-YWGMPLIAMMYPRGKHIQNERDPELVAH 170 (273)
T ss_dssp SCHHHHHHTTCSEEEEEEEETSTT--------HHH---HHHHHHHHHHHHH-HHTCCEEEEEEECSTTCSCTTCHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEecCCCC--------HHH---HHHHHHHHHHHHH-HcCCCEEEEeCCCCcccCCCCCHhHHHH
Confidence 22223334447888 77777631 111 1234455555444 348899886421 1 12234456
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCC--HHHHHHHHH---hcCCcEEEeccc
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC--LADVEACLA---QTGVAGVMTAEG 364 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s--~~da~~~l~---~~Gad~VmiGRa 364 (487)
+++.++++|+|.|.++. ..+++.++++++.+++||++.|||.+ .+|+.+++. +.||++|++||+
T Consensus 171 ~a~~a~~~Gad~i~~~~-----------~~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~ 239 (273)
T 2qjg_A 171 AARLGAELGADIVKTSY-----------TGDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRN 239 (273)
T ss_dssp HHHHHHHTTCSEEEECC-----------CSSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHH
T ss_pred HHHHHHHcCCCEEEECC-----------CCCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHH
Confidence 66889999999999841 24789999999999999999999995 888555442 589999999999
Q ss_pred cccCcccc
Q psy7343 365 NLYNPALF 372 (487)
Q Consensus 365 ~l~~P~lf 372 (487)
++..|+.+
T Consensus 240 i~~~~~~~ 247 (273)
T 2qjg_A 240 IFQHDDVV 247 (273)
T ss_dssp HHTSSSHH
T ss_pred hhCCCCHH
Confidence 99988764
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.6e-09 Score=100.14 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE--EccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V--hgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+|+.+.++++.+++. ++++.+.. ...+.++.+++.|+|.|.+ +|+|... ....++++.++++++. +
T Consensus 114 ~p~~l~~~i~~~~~~-g~~v~~~v-------~t~eea~~a~~~Gad~Ig~~~~g~t~~~---~~~~~~~~li~~l~~~-~ 181 (229)
T 3q58_A 114 RPVDIDSLLTRIRLH-GLLAMADC-------STVNEGISCHQKGIEFIGTTLSGYTGPI---TPVEPDLAMVTQLSHA-G 181 (229)
T ss_dssp CSSCHHHHHHHHHHT-TCEEEEEC-------SSHHHHHHHHHTTCSEEECTTTTSSSSC---CCSSCCHHHHHHHHTT-T
T ss_pred ChHHHHHHHHHHHHC-CCEEEEec-------CCHHHHHHHHhCCCCEEEecCccCCCCC---cCCCCCHHHHHHHHHc-C
Confidence 456677888877764 78888765 4566778889999999964 4544432 2345689999999988 9
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
+|||++|||.|++|+.+++ +.|||+|++|++++ +|+.+
T Consensus 182 ipvIA~GGI~t~~d~~~~~-~~GadgV~VGsai~-~p~~~ 219 (229)
T 3q58_A 182 CRVIAEGRYNTPALAANAI-EHGAWAVTVGSAIT-RIEHI 219 (229)
T ss_dssp CCEEEESSCCSHHHHHHHH-HTTCSEEEECHHHH-CHHHH
T ss_pred CCEEEECCCCCHHHHHHHH-HcCCCEEEEchHhc-ChHHH
Confidence 9999999999999999999 67999999997766 56654
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.9e-09 Score=104.85 Aligned_cols=68 Identities=22% Similarity=0.379 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 318 LASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
...++.++++++..++||+ ++|||.|.+|+.+++ ..|||+|++||+++..++. ++.++++.+.+.+|.
T Consensus 193 ~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~-~~GadgV~vGsai~~~~~p--------~~~~~~l~~~~~~~~ 262 (305)
T 2nv1_A 193 GAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKSDNP--------AKFAKAIVEATTHFT 262 (305)
T ss_dssp TCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHH-HTTCSCEEECGGGGGSSCH--------HHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHH-HcCCCEEEEcHHHHcCCCH--------HHHHHHHHHHHHHhc
Confidence 3568899999998899999 999999999999999 6899999999999975432 234455555555553
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.1e-09 Score=106.54 Aligned_cols=220 Identities=13% Similarity=0.008 Sum_probs=126.7
Q ss_pred hcCCCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccc-------------------cCcH---HHHHHhhh--C
Q psy7343 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI-------------------ADKK---LRQEILMS--T 130 (487)
Q Consensus 75 ~~~~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~-------------------~~~~---~~~~~~~~--~ 130 (487)
++ ++++++|++.--.|..+++.+.+.|+++++|+|++.+... ..+. ...+.+.. .
T Consensus 12 ~l-~nPi~~Aag~~~~~~~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~ 90 (314)
T 2e6f_A 12 VF-ANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHD 90 (314)
T ss_dssp EE-SSSEEECTTSSCSSHHHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHTCC
T ss_pred ec-CCCcEECCCCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHHHHHHHhh
Confidence 44 7789999766113788999999999999999999887632 0111 11122222 2
Q ss_pred CCCCceeeeeccccCCCCCccccccccCCCchHHH---HHHHHhCCccceeccccchhhhcChhHHHHHHhc--CCCCCC
Q psy7343 131 PEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWR---LLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPEDRP 205 (487)
Q Consensus 131 ~~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr---~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~--~~~~~P 205 (487)
..+.|+++|+... ....+..-...+.+.+++ .+..|++ ||.. -.+..+..+++...++++. ...+.|
T Consensus 91 ~~~~p~~~~i~g~----~~~~~~~~a~~~~~~g~d~~~~iein~~---~P~~-~g~~~~g~~~~~~~~ii~~vr~~~~~P 162 (314)
T 2e6f_A 91 YSKKPLFLSISGL----SVEENVAMVRRLAPVAQEKGVLLELNLS---CPNV-PGKPQVAYDFEAMRTYLQQVSLAYGLP 162 (314)
T ss_dssp TTTCCEEEEECCS----SHHHHHHHHHHHHHHHHHHCCEEEEECC---CCCS-TTCCCGGGSHHHHHHHHHHHHHHHCSC
T ss_pred cCCCcEEEEeCCC----CHHHHHHHHHHHHHhCCCcCceEEEEcC---CCCC-CCchhhcCCHHHHHHHHHHHHHhcCCC
Confidence 2468999997321 111111111011111222 2222333 3322 1234455566666666641 112689
Q ss_pred eeeeecc-CCHHHHHHHHHhhCCc--CcEEEeecCCCcceeec---c--------Cccc-cccCChHHHHHHHHHHhhhc
Q psy7343 206 LIIQFCG-NDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKR---G--------HYGA-YLQDDWPLLTNLVSSLRQAV 270 (487)
Q Consensus 206 v~Vqi~g-~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~---g--------r~G~-~l~~d~~~i~eiv~~v~~~~ 270 (487)
|++|+.. .+.+++.++++.++++ .|+|.++.......... + ..|+ ..........+.++.+++.+
T Consensus 163 v~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~ 242 (314)
T 2e6f_A 163 FGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRC 242 (314)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhc
Confidence 9999984 4777888888877664 67777653220000000 0 0111 11111223446777788888
Q ss_pred -cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 271 -QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 271 -~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
++||++.+ ++.+..++.+.+ .+|||+|++ ||.-
T Consensus 243 ~~ipvi~~G----GI~~~~da~~~l-~~GAd~V~i-g~~~ 276 (314)
T 2e6f_A 243 PDKLVFGCG----GVYSGEDAFLHI-LAGASMVQV-GTAL 276 (314)
T ss_dssp TTSEEEEES----SCCSHHHHHHHH-HHTCSSEEE-CHHH
T ss_pred CCCCEEEEC----CCCCHHHHHHHH-HcCCCEEEE-chhh
Confidence 89999998 788889998888 579999999 8753
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-09 Score=103.00 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=80.1
Q ss_pred EEEEeecccc--cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH
Q psy7343 274 VSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 274 V~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l 351 (487)
..+++|-+.+ ..+..++++.+++.|++.|.++....... . ...+++.++++++.+++||+++|||+|++++++++
T Consensus 22 ~~v~~~~~~~~~~~~~~~~a~~~~~~G~~~i~v~d~~~~~~--~-~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l 98 (247)
T 3tdn_A 22 FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT--K-SGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF 98 (247)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTC--S-SCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH
T ss_pred EEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEecCcccC--C-CcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH
Confidence 4556654332 23789999999999999999987754432 1 23578999999999999999999999999999999
Q ss_pred HhcCCcEEEeccccccCcccccC
Q psy7343 352 AQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 352 ~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
+.|||+|++||+++.||+++.+
T Consensus 99 -~~Gad~V~ig~~~l~dp~~~~~ 120 (247)
T 3tdn_A 99 -LRGADKVSINTAAVENPSLITQ 120 (247)
T ss_dssp -HTTCSEECCSHHHHHCTHHHHH
T ss_pred -HcCCCeeehhhHHhhChHHHHH
Confidence 6899999999999999998653
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-08 Score=95.63 Aligned_cols=145 Identities=13% Similarity=0.168 Sum_probs=104.5
Q ss_pred CCCeeeeecc-CCHHHHHHHHHhhCC-c--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe
Q psy7343 203 DRPLIIQFCG-NDSKNLTEAAKLAEP-H--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~g-~d~~~~~~aa~~~~~-~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi 278 (487)
+..+-.+..| .+.++.+..|+++.+ . -+.| ++-+++. -..++.|+....+..+.+.+. ++.|+.-+
T Consensus 73 ~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~i--------KlEv~~d-~~~llpD~~~tv~aa~~L~~~-Gf~Vlpy~ 142 (265)
T 1wv2_A 73 RYTILPNTAGCYDAVEAVRTCRLARELLDGHNLV--------KLEVLAD-QKTLFPNVVETLKAAEQLVKD-GFDVMVYT 142 (265)
T ss_dssp TSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEE--------EECCBSC-TTTCCBCHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred CCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeE--------EEEeecC-ccccCcCHHHHHHHHHHHHHC-CCEEEEEe
Confidence 3445556654 678888899998888 5 2222 2223332 234567777777766666543 66555211
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
.+....++++++.|++.||.+|.-. |.-.|..+++.++.+++..++|||+.|||.|++|+.+++ +.|||+
T Consensus 143 ------~dd~~~akrl~~~G~~aVmPlg~pI---GsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~Am-eLGAdg 212 (265)
T 1wv2_A 143 ------SDDPIIARQLAEIGCIAVMPLAGLI---GSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAM-ELGCEA 212 (265)
T ss_dssp ------CSCHHHHHHHHHSCCSEEEECSSST---TCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHH-HHTCSE
T ss_pred ------CCCHHHHHHHHHhCCCEEEeCCccC---CCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-HcCCCE
Confidence 1347789999999999999977621 112355689999999999999999999999999999999 689999
Q ss_pred EEecccccc
Q psy7343 359 VMTAEGNLY 367 (487)
Q Consensus 359 VmiGRa~l~ 367 (487)
|++|+++..
T Consensus 213 VlVgSAI~~ 221 (265)
T 1wv2_A 213 VLMNTAIAH 221 (265)
T ss_dssp EEESHHHHT
T ss_pred EEEChHHhC
Confidence 999999853
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-08 Score=95.62 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=81.1
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE--EccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V--hgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+|+.+.++++.+++. ++++.+.. ...+.++.+++.|+|.|.+ +|+|...+ ...++++.++++++. +
T Consensus 114 ~p~~l~~~i~~~~~~-g~~v~~~v-------~t~eea~~a~~~Gad~Ig~~~~g~t~~~~---~~~~~~~~i~~l~~~-~ 181 (232)
T 3igs_A 114 RPVAVEALLARIHHH-HLLTMADC-------SSVDDGLACQRLGADIIGTTMSGYTTPDT---PEEPDLPLVKALHDA-G 181 (232)
T ss_dssp CSSCHHHHHHHHHHT-TCEEEEEC-------CSHHHHHHHHHTTCSEEECTTTTSSSSSC---CSSCCHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHHC-CCEEEEeC-------CCHHHHHHHHhCCCCEEEEcCccCCCCCC---CCCCCHHHHHHHHhc-C
Confidence 456777888877754 78888765 4466778889999999964 34444332 245689999999988 9
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+|||++|||.|++|+.+++ +.|||+|++|++++ +|+.
T Consensus 182 ipvIA~GGI~t~~d~~~~~-~~GadgV~VGsal~-~p~~ 218 (232)
T 3igs_A 182 CRVIAEGRYNSPALAAEAI-RYGAWAVTVGSAIT-RLEH 218 (232)
T ss_dssp CCEEEESCCCSHHHHHHHH-HTTCSEEEECHHHH-CHHH
T ss_pred CcEEEECCCCCHHHHHHHH-HcCCCEEEEehHhc-CHHH
Confidence 9999999999999999999 67999999998776 4554
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-08 Score=107.54 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=91.9
Q ss_pred HHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHH
Q psy7343 218 LTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLE 295 (487)
Q Consensus 218 ~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le 295 (487)
+.+.++.+ +..+|.|.+|.+. | ++....++++++++.+ ++||+++. ..+ .+.++.++
T Consensus 238 ~~~~a~~l~~aGvd~v~i~~~~-------G--------~~~~~~e~i~~i~~~~p~~pvi~g~-----~~t-~e~a~~l~ 296 (494)
T 1vrd_A 238 TMERVEKLVKAGVDVIVIDTAH-------G--------HSRRVIETLEMIKADYPDLPVVAGN-----VAT-PEGTEALI 296 (494)
T ss_dssp HHHHHHHHHHTTCSEEEECCSC-------C--------SSHHHHHHHHHHHHHCTTSCEEEEE-----ECS-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEecC-------C--------chHHHHHHHHHHHHHCCCceEEeCC-----cCC-HHHHHHHH
Confidence 34444444 4448888887542 1 2455667788888887 79998852 223 44568888
Q ss_pred HcCCcEEEEEcccc-----CCCCCCCCCCCHHHHHHHHhh---CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 296 RAGCQLLAVHGRTV-----DQRGMNTGLASWEHITAVRKA---LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 296 ~~G~d~I~VhgRt~-----~~~g~~~g~~~~~~i~~i~~~---~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
++|+|+|.+.+... .... ..+.+.++.+.++++. .++|||++|||.+++|+.+++ ..|||+|++||+++.
T Consensus 297 ~~G~d~I~v~~~~G~~~~~~~~~-~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kal-a~GAd~V~iGr~~l~ 374 (494)
T 1vrd_A 297 KAGADAVKVGVGPGSICTTRVVA-GVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKAL-AAGAESVMVGSIFAG 374 (494)
T ss_dssp HTTCSEEEECSSCSTTCHHHHHH-CCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHH-HTTCSEEEESHHHHT
T ss_pred HcCCCEEEEcCCCCccccccccC-CCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHH-HcCCCEEEECHHHhc
Confidence 99999999933211 0000 1134556666665544 689999999999999999999 689999999999999
Q ss_pred Ccccc
Q psy7343 368 NPALF 372 (487)
Q Consensus 368 ~P~lf 372 (487)
+|..-
T Consensus 375 ~~e~~ 379 (494)
T 1vrd_A 375 TEEAP 379 (494)
T ss_dssp BTTSS
T ss_pred CCcCC
Confidence 88763
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.6e-08 Score=105.26 Aligned_cols=140 Identities=19% Similarity=0.205 Sum_probs=97.1
Q ss_pred CeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccc
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQD 283 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d 283 (487)
++.+.+.. ..+.+..+..+++...|.|.|+..+| +...+.++++++++.. ++||+++ +
T Consensus 246 ~V~aavg~-~~d~~era~aLveaGvd~I~Id~a~g---------------~~~~v~~~i~~i~~~~~~~~vi~g-----~ 304 (511)
T 3usb_A 246 LVGAAVGV-TADAMTRIDALVKASVDAIVLDTAHG---------------HSQGVIDKVKEVRAKYPSLNIIAG-----N 304 (511)
T ss_dssp CCEEEECS-STTHHHHHHHHHHTTCSEEEEECSCT---------------TSHHHHHHHHHHHHHCTTSEEEEE-----E
T ss_pred eeeeeeee-ccchHHHHHHHHhhccceEEeccccc---------------chhhhhhHHHHHHHhCCCceEEee-----e
Confidence 34444432 23344444455555688898886653 2445667788888876 4788875 2
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccC-------CCCCCCCCCCHHHHHHHHh---hCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVD-------QRGMNTGLASWEHITAVRK---ALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~-------~~g~~~g~~~~~~i~~i~~---~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
+ ...+.++.+.++|+|+|.+ |.+.. .. ..|.+.+..+.++++ ..++|||++|||.+++|+.+++ .
T Consensus 305 v-~t~e~a~~~~~aGad~i~v-g~g~gsi~~~~~~~--g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal-a 379 (511)
T 3usb_A 305 V-ATAEATKALIEAGANVVKV-GIGPGSICTTRVVA--GVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKAL-A 379 (511)
T ss_dssp E-CSHHHHHHHHHHTCSEEEE-CSSCSTTCCHHHHH--CCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHH-H
T ss_pred e-ccHHHHHHHHHhCCCEEEE-CCCCcccccccccc--CCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH-H
Confidence 3 3456688899999999998 43221 11 124566777766644 4579999999999999999999 6
Q ss_pred cCCcEEEeccccccCcc
Q psy7343 354 TGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~ 370 (487)
.|||+||+|++++.-..
T Consensus 380 ~GA~~V~vGs~~~~~~e 396 (511)
T 3usb_A 380 AGAHVVMLGSMFAGVAE 396 (511)
T ss_dssp TTCSEEEESTTTTTBTT
T ss_pred hCchhheecHHHhcCcc
Confidence 89999999999876643
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.6e-08 Score=100.18 Aligned_cols=141 Identities=15% Similarity=0.153 Sum_probs=114.2
Q ss_pred CeeeeeccCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeeccc
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQ 282 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~ 282 (487)
|+...+.+.+++++.+.++.+.+ .|+.|+|++|+ +++...++++++++++ ++++.+...-++
T Consensus 138 ~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~gd~~l~vD~n~~~ 201 (384)
T 2pgw_A 138 GYFYFLQGETAEELARDAAVGHAQGERVFYLKVGR----------------GEKLDLEITAAVRGEIGDARLRLDANEGW 201 (384)
T ss_dssp EBCEECCCSSHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHTTSTTCEEEEECTTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEEEECcCC----------------CHHHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 44433445688888887776554 49999999875 4667778899999988 578888776677
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+.++..++++.++++|++.|. + + + ...+|+..+++++.+++||++++.+.+.++++++++...||.|++.
T Consensus 202 ~~~~a~~~~~~l~~~~i~~iE-------q-P-~-~~~~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik 271 (384)
T 2pgw_A 202 SVHDAINMCRKLEKYDIEFIE-------Q-P-T-VSWSIPAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICIG 271 (384)
T ss_dssp CHHHHHHHHHHHGGGCCSEEE-------C-C-S-CTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEe-------C-C-C-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEc
Confidence 888889999999999999875 2 1 2 3468999999999999999999999999999999988889999998
Q ss_pred cccccCccc
Q psy7343 363 EGNLYNPAL 371 (487)
Q Consensus 363 Ra~l~~P~l 371 (487)
.+.++.++-
T Consensus 272 ~~~~GGit~ 280 (384)
T 2pgw_A 272 PREIGGIQP 280 (384)
T ss_dssp HHHHTSHHH
T ss_pred chhhCCHHH
Confidence 887777554
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.7e-09 Score=109.43 Aligned_cols=198 Identities=16% Similarity=0.202 Sum_probs=104.1
Q ss_pred CCceEEecCC--CCC----CHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcc
Q psy7343 78 SPRFILAPMV--DAS----ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRF 151 (487)
Q Consensus 78 ~~~~~LAPMa--g~t----d~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~ 151 (487)
+.|+++|||+ |++ +.+|++.|+++|+..++|+|.+ .++- . ..... .+.|+.+|+... .+...
T Consensus 80 ~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s-~~le----~---v~~~~-~~~~~~~QLy~~---~d~~~ 147 (368)
T 2nli_A 80 KAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG-ATFE----E---ISEGL-NGGPRWFQIYMA---KDDQQ 147 (368)
T ss_dssp SSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCS-SCHH----H---HHHHH-TTCCEEEEECCB---SSHHH
T ss_pred CCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHh-HHHH----H---HHHhC-CCCCEEEEEecc---CCHHH
Confidence 5689999999 888 4899999999999999999987 3331 1 11111 367899997432 11111
Q ss_pred cc-----ccccCC------CchHH---HHHHHHhCCcccee-ccc--------cchhh---h--cChhHHHHHHh--cCC
Q psy7343 152 IL-----APMVDA------SELPW---RLLSRRYGSHLCYT-PMV--------SAHQF---I--ADKKLRQEILM--STP 201 (487)
Q Consensus 152 ~l-----Apma~~------td~~f---r~i~~~~Ga~l~~t-~~v--------~~~~L---l--~~~~~~~~~l~--~~~ 201 (487)
.. +-.+++ .|.+. |..+...|..+-.+ +.+ .++.+ + .++....+.++ ...
T Consensus 148 ~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~lr~~ 227 (368)
T 2nli_A 148 NRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAGH 227 (368)
T ss_dssp HHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHHHHHHHHHH
Confidence 00 000010 01111 00000000000000 000 11221 1 13322222232 112
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
.+.||++|.. .++ +.++.++++ +|+|.++.+- - +... .....++.+.++.+++.. ++||++.+
T Consensus 228 ~~~PvivK~v-~~~----e~a~~a~~~Gad~I~vs~~g-g---r~~~---~g~~~~~~l~~v~~~v~~--~ipVia~G-- 291 (368)
T 2nli_A 228 SGLPVFVKGI-QHP----EDADMAIKRGASGIWVSNHG-A---RQLY---EAPGSFDTLPAIAERVNK--RVPIVFDS-- 291 (368)
T ss_dssp SSSCEEEEEE-CSH----HHHHHHHHTTCSEEEECCGG-G---TSCS---SCCCHHHHHHHHHHHHTT--SSCEEECS--
T ss_pred cCCCEEEEcC-CCH----HHHHHHHHcCCCEEEEcCCC-c---CCCC---CCCChHHHHHHHHHHhCC--CCeEEEEC--
Confidence 3689999953 233 334555555 7888774210 0 0000 112345666665554432 69999997
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
++.+..++++.+. .|+|+|+| ||
T Consensus 292 --GI~~g~D~~kala-lGAd~V~i-Gr 314 (368)
T 2nli_A 292 --GVRRGEHVAKALA-SGADVVAL-GR 314 (368)
T ss_dssp --SCCSHHHHHHHHH-TTCSEEEE-CH
T ss_pred --CCCCHHHHHHHHH-cCCCEEEE-CH
Confidence 8889999999988 89999999 77
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-08 Score=101.26 Aligned_cols=214 Identities=11% Similarity=0.041 Sum_probs=127.4
Q ss_pred CCceEEecCCCCCCHH-HHHHHHHcCCCeEEccceecccccc------------------------CcHHHHHHhhhCCC
Q psy7343 78 SPRFILAPMVDASELP-WRLLSRRYGSHLCYTPMVSAHQFIA------------------------DKKLRQEILMSTPE 132 (487)
Q Consensus 78 ~~~~~LAPMag~td~p-FR~l~~~~Gadl~~TEMi~a~~l~~------------------------~~~~~~~~~~~~~~ 132 (487)
++++++|+ |+++.+ |++.+.+.|+++++|++++.+.... +.....+.+.....
T Consensus 55 ~npi~~aa--g~~~~~~~~~~~a~~G~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g~~~~g~~~~~~~~~~~~~ 132 (336)
T 1f76_A 55 KNPLGLAA--GLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKAHY 132 (336)
T ss_dssp SSSEEECT--TSSTTCCCHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHHHHHHHHHCCC
T ss_pred CCCcEeCc--ccCCcHHHHHHHHHcCccEEEeCCCCCCCCCCCCCcceeeccccceeeecCCCCCcCHHHHHHHHHhccc
Confidence 67899995 566665 8889999999999999998763210 01122222333333
Q ss_pred CCceeeeeccccCCCCCccccccccCCCchHHHHHHHHh--CCccc----eeccccchhhhcChhHHHHHHhc----C--
Q psy7343 133 DRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY--GSHLC----YTPMVSAHQFIADKKLRQEILMS----T-- 200 (487)
Q Consensus 133 e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~--Ga~l~----~t~~v~~~~Ll~~~~~~~~~l~~----~-- 200 (487)
+.|+++|+... .. .|.... -..|....+.. |+|.. .+|...+...+++++...++++. .
T Consensus 133 ~~~~~v~i~~~----~~----~~i~~~-~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~ 203 (336)
T 1f76_A 133 DGVLGINIGKN----KD----TPVEQG-KDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQND 203 (336)
T ss_dssp CSEEEEEECCC----TT----SCGGGT-HHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCC----CC----Cccccc-HHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHh
Confidence 56899997322 10 121111 11233322221 44431 12332334455666666666541 1
Q ss_pred -----CCCCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCcce-ee----ccCccc-cccCChHHHHHHHHHHh
Q psy7343 201 -----PEDRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMV-AK----RGHYGA-YLQDDWPLLTNLVSSLR 267 (487)
Q Consensus 201 -----~~~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i-~~----~gr~G~-~l~~d~~~i~eiv~~v~ 267 (487)
..+.||+||+.. .+.++..++++.+++. .|+|.+..+..... .. ...+|+ .....+....+.++.++
T Consensus 204 ~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~ 283 (336)
T 1f76_A 204 LQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLS 283 (336)
T ss_dssp HHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHH
T ss_pred hhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHH
Confidence 236899999984 5667888889888776 89999864321100 00 000111 11112334456677777
Q ss_pred hhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 268 QAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 268 ~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
+.+ ++||++.+ ++.+..++.+.++ +|||+|++ ||.
T Consensus 284 ~~~~~~ipVi~~G----GI~~~~da~~~l~-~GAd~V~i-gr~ 320 (336)
T 1f76_A 284 LELNGRLPIIGVG----GIDSVIAAREKIA-AGASLVQI-YSG 320 (336)
T ss_dssp HHHTTSSCEEEES----SCCSHHHHHHHHH-HTCSEEEE-SHH
T ss_pred HHhCCCCCEEEEC----CCCCHHHHHHHHH-CCCCEEEe-eHH
Confidence 777 89999998 7778899988887 69999999 774
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.6e-09 Score=106.46 Aligned_cols=194 Identities=17% Similarity=0.169 Sum_probs=106.2
Q ss_pred CCceEEecCCCCCCHH-------HHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCc
Q psy7343 78 SPRFILAPMVDASELP-------WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPR 150 (487)
Q Consensus 78 ~~~~~LAPMag~td~p-------FR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~ 150 (487)
+.|+++||| |+++++ |++.|+++|+..++|+|.+ .++- ..... ..+.|+.+|+.... +..
T Consensus 94 ~~Pi~iAPm-g~~~l~~~~~e~~laraA~~~G~~~~~s~~~s-~~le-------~v~~~-~~~~~~~~QLy~~~---d~~ 160 (392)
T 2nzl_A 94 SMPICVGAT-AMQRMAHVDGELATVRACQSLGTGMMLSSWAT-SSIE-------EVAEA-GPEALRWLQLYIYK---DRE 160 (392)
T ss_dssp SSSEEECCC-SCGGGTSTTHHHHHHHHHHHHTCEEEECTTCS-SCHH-------HHHHH-CTTSEEEEEECCBS---SHH
T ss_pred CCceEeccc-cccccccchHHHHHHHHHHHcCCCeeccchHH-HHHH-------HHHHh-cCCCcEEEEEEecC---CHH
Confidence 568999999 999987 9999999999999999986 3331 11112 24678999974321 111
Q ss_pred ccc-----ccccCCC------ch---HHHHHHHHhCCccce--------------ecc---ccch---hhhc---ChhHH
Q psy7343 151 FIL-----APMVDAS------EL---PWRLLSRRYGSHLCY--------------TPM---VSAH---QFIA---DKKLR 193 (487)
Q Consensus 151 ~~l-----Apma~~t------d~---~fr~i~~~~Ga~l~~--------------t~~---v~~~---~Ll~---~~~~~ 193 (487)
... +-.+++. |. +.|..+...|..+-+ .|+ ..++ +++. +++..
T Consensus 161 ~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~ 240 (392)
T 2nzl_A 161 VTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSIS 240 (392)
T ss_dssp HHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCC
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHH
Confidence 000 0001110 10 112222222211000 000 0011 2222 44433
Q ss_pred HHHHh--cCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHh
Q psy7343 194 QEILM--STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLR 267 (487)
Q Consensus 194 ~~~l~--~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~ 267 (487)
.+.++ ....+.||++|.. .+++ .|+.++++ +|+|.+. ++.|.++ ...++.+.++.+++.
T Consensus 241 ~~~i~~lr~~~~~PvivKgv-~~~e----~A~~a~~aGad~I~vs----------~~ggr~~~~g~~~~~~l~~v~~av~ 305 (392)
T 2nzl_A 241 WEDIKWLRRLTSLPIVAKGI-LRGD----DAREAVKHGLNGILVS----------NHGARQLDGVPATIDVLPEIVEAVE 305 (392)
T ss_dssp HHHHHHHC--CCSCEEEEEE-CCHH----HHHHHHHTTCCEEEEC----------CGGGTSSTTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCEEEEec-CCHH----HHHHHHHcCCCEEEeC----------CCCCCcCCCCcChHHHHHHHHHHcC
Confidence 33343 2234689999954 2333 34555554 7777763 1111111 234566666555443
Q ss_pred hhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 268 QAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 268 ~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
. ++||++.+ ++.+..|+++.+. .|||+|+| ||
T Consensus 306 ~--~ipVia~G----GI~~g~Dv~kala-lGAd~V~i-Gr 337 (392)
T 2nzl_A 306 G--KVEVFLDG----GVRKGTDVLKALA-LGAKAVFV-GR 337 (392)
T ss_dssp T--SSEEEECS----SCCSHHHHHHHHH-TTCSEEEE-CH
T ss_pred C--CCEEEEEC----CCCCHHHHHHHHH-hCCCeeEE-CH
Confidence 2 58999997 8889999999988 89999999 87
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.6e-08 Score=99.23 Aligned_cols=217 Identities=12% Similarity=0.083 Sum_probs=125.9
Q ss_pred hhcCCCceEEecCCCC--CCHHHHHHHHHcCCCeEEccceecccc---------------cc----Cc---HHHHHHhh-
Q psy7343 74 TQLGSPRFILAPMVDA--SELPWRLLSRRYGSHLCYTPMVSAHQF---------------IA----DK---KLRQEILM- 128 (487)
Q Consensus 74 ~~~~~~~~~LAPMag~--td~pFR~l~~~~Gadl~~TEMi~a~~l---------------~~----~~---~~~~~~~~- 128 (487)
.++ ++++++| +|. .+..+...+.+.|++.+.|..+..+.. ++ .+ +.-.+.+.
T Consensus 45 l~~-~NPv~lA--aG~~~~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~~ 121 (345)
T 3oix_A 45 FDF-DNCLMNA--AGVYCMTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPNLGINYYLDYVTE 121 (345)
T ss_dssp EEE-SCSEEEC--TTSSCSSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCBSCHHHHHHHHHH
T ss_pred EEC-CCCCEEc--CCCCCCCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCChhHHHHHHHHHH
Confidence 344 7789999 676 366888888888988877777655421 11 01 11111111
Q ss_pred --hCCCCCceeeeeccccCCCCCccccccccCCCchHHH-HHHHHhCCccceeccccchhhhcChhHHHHHHhc--CCCC
Q psy7343 129 --STPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWR-LLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203 (487)
Q Consensus 129 --~~~~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr-~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~--~~~~ 203 (487)
....+.|+++|+.+. +...+..-...+.+.++. .+..|+| ||... .+..|.++++.+.++++. ...+
T Consensus 122 ~~~~~~~~pvivsI~g~----~~~d~~~~a~~l~~~g~~d~ielNis---CPn~~-G~~~l~~~~e~l~~il~av~~~~~ 193 (345)
T 3oix_A 122 LQKQPDSKNHFLSLVGM----SPEETHTILXMVEASKYQGLVELNLS---CPNVP-GXPQIAYDFETTDQILSEVFTYFT 193 (345)
T ss_dssp HHHSTTCCCCEEEECCS----SHHHHHHHHHHHHHSSCCSEEEEECS---CCCST-TCCCGGGCHHHHHHHHHHHTTTCC
T ss_pred HhhccCCCCEEEEecCC----CHHHHHHHHHHHhccCCCcEEEEecC---CCCcC-CchhhcCCHHHHHHHHHHHHHHhC
Confidence 133578999997421 211111100000000011 1222344 55443 345677898888888863 3447
Q ss_pred CCeeeeecc-CCHHHHHHHHHhhCCc-CcEEE----------eecCCCcceeeccCccc-cccCChHHHHHHHHHHhhhc
Q psy7343 204 RPLIIQFCG-NDSKNLTEAAKLAEPH-CDGID----------INIGCPQMVAKRGHYGA-YLQDDWPLLTNLVSSLRQAV 270 (487)
Q Consensus 204 ~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~Id----------iN~GcP~~i~~~gr~G~-~l~~d~~~i~eiv~~v~~~~ 270 (487)
.||+|||+. .+..+++++++.+... .+.|+ |+..-|.. .....+|+ .....++...+++..+++.+
T Consensus 194 ~PV~vKi~p~~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~-~~~~~~gGlSG~ai~p~a~~~v~~i~~~~ 272 (345)
T 3oix_A 194 KPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVI-XPKNGFGGIGGDYVKPTALANVHAFYKRL 272 (345)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESC-SGGGGEEEEEEGGGHHHHHHHHHHHHTTS
T ss_pred CCeEEEECCCCCHHHHHHHHHHhCCCceEEEEeecccccceeeccCcccc-ccccccCCcCCccccHHHHHHHHHHHHHc
Confidence 899999994 4666777776665443 44433 32111110 00111121 12344556677888899888
Q ss_pred --cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 271 --QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 271 --~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
++||++.+ ++.+..++.+.+. +|||+|+| ||.
T Consensus 273 ~~~ipIIg~G----GI~s~~da~~~l~-aGAd~V~i-gra 306 (345)
T 3oix_A 273 NPSIQIIGTG----GVXTGRDAFEHIL-CGASMVQI-GTA 306 (345)
T ss_dssp CTTSEEEEES----SCCSHHHHHHHHH-HTCSEEEE-SHH
T ss_pred CCCCcEEEEC----CCCChHHHHHHHH-hCCCEEEE-ChH
Confidence 69999998 8889999998885 89999999 885
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-08 Score=96.58 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=78.5
Q ss_pred EEEEeecccc------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHH
Q psy7343 274 VSCKIRIYQD------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADV 347 (487)
Q Consensus 274 V~vKiR~~~d------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da 347 (487)
..+|+|.|+. ..+..++++.+++.|+|.|.++.++.... . ...+++.+++++ .+++||+++|||++.+++
T Consensus 13 ~~vk~~~G~~~~~~~~~~~~~~~a~~~~~~Gad~i~v~d~~~~~~--~-~~~~~~~i~~i~-~~~ipvi~~Ggi~~~~~~ 88 (241)
T 1qo2_A 13 KVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIE--N-SGENLPVLEKLS-EFAEHIQIGGGIRSLDYA 88 (241)
T ss_dssp EEEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHHHHHH--C-CCTTHHHHHHGG-GGGGGEEEESSCCSHHHH
T ss_pred EEEEEeccccccceecCcCHHHHHHHHHHcCCCEEEEeccccccc--C-CchhHHHHHHHH-hcCCcEEEECCCCCHHHH
Confidence 4556655542 24789999999999999999988655322 1 235789999999 889999999999999999
Q ss_pred HHHHHhcCCcEEEeccccccCcccccC
Q psy7343 348 EACLAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
.+++ +.|||+|++|++++.||+++.+
T Consensus 89 ~~~~-~~Gad~V~lg~~~l~~p~~~~~ 114 (241)
T 1qo2_A 89 EKLR-KLGYRRQIVSSKVLEDPSFLKS 114 (241)
T ss_dssp HHHH-HTTCCEEEECHHHHHCTTHHHH
T ss_pred HHHH-HCCCCEEEECchHhhChHHHHH
Confidence 9999 5899999999999999997643
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-07 Score=95.05 Aligned_cols=195 Identities=13% Similarity=0.148 Sum_probs=106.4
Q ss_pred CCceEEecCCCCC-------CHHHHHHHHHcCCCeEEccceeccccccCc--HHHHHHhhhCCCCCceeeeeccccCCCC
Q psy7343 78 SPRFILAPMVDAS-------ELPWRLLSRRYGSHLCYTPMVSAHQFIADK--KLRQEILMSTPEDRPLIIQRTIFPRLGS 148 (487)
Q Consensus 78 ~~~~~LAPMag~t-------d~pFR~l~~~~Gadl~~TEMi~a~~l~~~~--~~~~~~~~~~~~e~p~~vQl~~~~~~g~ 148 (487)
++++++|||+|++ +.+|++.|+++|+.+++++|.+. + ... ....+.+.....+.|+++|+... .+
T Consensus 55 ~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~--l-~~~~~~~~~~~~~~~~~~~pv~~~i~~~---~~ 128 (349)
T 1p0k_A 55 SSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA--L-KDPSERLSYEIVRKENPNGLIFANLGSE---AT 128 (349)
T ss_dssp SCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT--T-TCHHHHHHHHHHHHHCSSSCEEEEEETT---CC
T ss_pred CCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc--c-cCcccccceehhhhhCCCceeEEeecCC---CC
Confidence 6789999999999 99999999999999999998765 2 221 12222333234567898886310 01
Q ss_pred CccccccccCCCchHHHHHHHHhCCcc------ceeccccchhhhcChhH--HHHHHh--cCCCCCCeeeeec--cCCHH
Q psy7343 149 PRFILAPMVDASELPWRLLSRRYGSHL------CYTPMVSAHQFIADKKL--RQEILM--STPEDRPLIIQFC--GNDSK 216 (487)
Q Consensus 149 ~~~~lApma~~td~~fr~i~~~~Ga~l------~~t~~v~~~~Ll~~~~~--~~~~l~--~~~~~~Pv~Vqi~--g~d~~ 216 (487)
.+ .+..+....|++. |+.+.+... .++.. ..+.++ ....+.||++|+. +.+++
T Consensus 129 ~~------------~~~~~~~~~gad~i~i~~~~~~~~~~~~---~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~ 193 (349)
T 1p0k_A 129 AA------------QAKEAVEMIGANALQIHLNVIQEIVMPE---GDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKA 193 (349)
T ss_dssp HH------------HHHHHHHHTTCSEEEEEECTTTTC-----------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHH
T ss_pred HH------------HHHHHHHhcCCCeEEecccchhhhcCCC---CCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHH
Confidence 11 1223333445543 111111110 01111 222222 1123689999974 34543
Q ss_pred HHHHHHHhhCCc-CcEEEe--ecCCCcc---eeecc-Cc---cccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccc
Q psy7343 217 NLTEAAKLAEPH-CDGIDI--NIGCPQM---VAKRG-HY---GAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVN 285 (487)
Q Consensus 217 ~~~~aa~~~~~~-~d~Idi--N~GcP~~---i~~~g-r~---G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~ 285 (487)
. ++.++++ +|+|.+ +.|.+.. ..+.. .. .......++.+.++ ++.+ ++||++.+ ++.
T Consensus 194 ~----a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v----~~~~~~ipvia~G----GI~ 261 (349)
T 1p0k_A 194 S----AGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEI----RSEFPASTMIASG----GLQ 261 (349)
T ss_dssp H----HHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHH----HHHCTTSEEEEES----SCC
T ss_pred H----HHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHH----HHhcCCCeEEEEC----CCC
Confidence 3 4444444 888887 3332110 00100 00 00112345555554 3444 79999997 888
Q ss_pred cHHHHHHHHHHcCCcEEEEEcc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgR 307 (487)
+..++.+.+. .|+|+|+| ||
T Consensus 262 ~~~d~~k~l~-~GAd~V~i-G~ 281 (349)
T 1p0k_A 262 DALDVAKAIA-LGASCTGM-AG 281 (349)
T ss_dssp SHHHHHHHHH-TTCSEEEE-CH
T ss_pred CHHHHHHHHH-cCCCEEEE-cH
Confidence 8999998886 69999999 77
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-07 Score=112.22 Aligned_cols=194 Identities=11% Similarity=0.134 Sum_probs=122.5
Q ss_pred CCCCcccccccc-CCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHh----cCCCCCCeeeeeccCCHHH--
Q psy7343 146 LGSPRFILAPMV-DASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILM----STPEDRPLIIQFCGNDSKN-- 217 (487)
Q Consensus 146 ~g~~~~~lApma-~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~d~~~-- 217 (487)
+++.|++.+||. ++++..+-....|.|. +. +.+... .+++...+.++ ..+.+.|+++++...+++.
T Consensus 580 lg~~PIi~a~M~~~vs~~~LaaAva~aGglG~-----i~g~g~-~~~e~l~~~i~~vk~~~~~~~p~gvN~~~~~p~~~~ 653 (2060)
T 2uva_G 580 LGVPPVMVAGMTPTTVPWDFVAATMNAGYHIE-----LAGGGY-YNAQKMSDAISKIEKAIPPGRGITVNLIYVNPRAMG 653 (2060)
T ss_dssp HTSCSEEECCCTTTTCSHHHHHHHHHTTCEEC-----EEGGGC-CSHHHHHHHHHHHGGGSCTTCCEEEEEETTCTTHHH
T ss_pred cccceEEecCCCCccccHHHHHHHHHCCCEEE-----ECcCCC-CCHHHHHHHHHHHHhhcccCCCeEecccccCcccch
Confidence 467899999999 5778777766666663 33 222221 22333333332 2223689999987534331
Q ss_pred -HHHHHHhhCCc-CcE--EEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHH
Q psy7343 218 -LTEAAKLAEPH-CDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARM 293 (487)
Q Consensus 218 -~~~aa~~~~~~-~d~--IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~ 293 (487)
+.+..+.+.+. .+. |.+..|.| ..+.+.++++ + .+++++..+ .+..+..+.+..
T Consensus 654 ~~~~~~~~~~~~gv~i~gv~~~~G~p---------------~~e~~~~~l~---~-~gi~~i~~v---~~~~~a~~~v~~ 711 (2060)
T 2uva_G 654 WQIPLLGRLRADGVPIEGLTIGAGVP---------------SIEVANEYIQ---T-LGIRHISFK---PGSVDAIQQVIN 711 (2060)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEESSCC---------------CHHHHHHHHH---H-SCCSEEEEC---CCSHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcceEeecCCCC---------------CHHHHHHHHH---H-cCCeEEEec---CCHHHHHHHHHH
Confidence 33455544444 333 44444433 2333334333 2 378887543 234456666667
Q ss_pred HHHcCCcEEE---EEccccCCCCCCCCC-----CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH----------HhcC
Q psy7343 294 LERAGCQLLA---VHGRTVDQRGMNTGL-----ASWEHITAVRKALTIPVIANGNIQCLADVEACL----------AQTG 355 (487)
Q Consensus 294 le~~G~d~I~---VhgRt~~~~g~~~g~-----~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l----------~~~G 355 (487)
+.++|+|+|+ +.|.. .|+..|. ...+.+.+|++.+++|||+.|||.+.+++.+++ ...|
T Consensus 712 l~~aG~D~iV~~q~~G~e---aGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~aaltg~ws~~~g~palG 788 (2060)
T 2uva_G 712 IAKANPTFPIILQWTGGR---GGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMP 788 (2060)
T ss_dssp HHHHCTTSCEEEEECCTT---SSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCC
T ss_pred HHHcCCCEEEEeeeEccc---CCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCC
Confidence 7899999998 54421 2233332 235788999999999999999999999999999 1379
Q ss_pred CcEEEeccccccCcc
Q psy7343 356 VAGVMTAEGNLYNPA 370 (487)
Q Consensus 356 ad~VmiGRa~l~~P~ 370 (487)
||+|++|+.++.-..
T Consensus 789 AdgV~~GT~f~~t~E 803 (2060)
T 2uva_G 789 FDGCMFGSRMMTAKE 803 (2060)
T ss_dssp CSCEEESGGGGGBTT
T ss_pred CCEEEEchhhhcCcC
Confidence 999999999988754
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-07 Score=91.55 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=107.2
Q ss_pred CCCeeeee---ccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe
Q psy7343 203 DRPLIIQF---CGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi---~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi 278 (487)
+.||++.+ +|.++++..+.++.++++ +++|.|+-++-.+...|.. |..+....+.+.+|..++....+.++.++.
T Consensus 78 ~~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~-gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~a 156 (295)
T 1xg4_A 78 SLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRP-NKAIVSKEEMVDRIRAAVDAKTDPDFVIMA 156 (295)
T ss_dssp CSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSS-SCCBCCHHHHHHHHHHHHHHCSSTTSEEEE
T ss_pred CCCEEecCCcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCC-CCccCCHHHHHHHHHHHHHhccCCCcEEEE
Confidence 47999998 455888988888877666 8999999988323333332 344554444555544444434467788888
Q ss_pred eccc----ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCC--CCHHHHHHHHH
Q psy7343 279 RIYQ----DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNI--QCLADVEACLA 352 (487)
Q Consensus 279 R~~~----d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI--~s~~da~~~l~ 352 (487)
|... +.++..+-++.++++|+|.|.+++. .+++.++++.+.+++|+++|... .++..-.+-|+
T Consensus 157 Rtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~~-----------~~~~~~~~i~~~~~iP~~~N~~~~g~~p~~~~~eL~ 225 (295)
T 1xg4_A 157 RTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI-----------TELAMYRQFADAVQVPILANITEFGATPLFTTDELR 225 (295)
T ss_dssp EECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC-----------CSHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHH
T ss_pred ecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeCC-----------CCHHHHHHHHHHcCCCEEEEecccCCCCCCCHHHHH
Confidence 8642 2357788889999999999999654 36788999999999999998765 23332223444
Q ss_pred hcCCcEEEeccccc
Q psy7343 353 QTGVAGVMTAEGNL 366 (487)
Q Consensus 353 ~~Gad~VmiGRa~l 366 (487)
+.|++.|++|.+++
T Consensus 226 ~~G~~~v~~~~~~~ 239 (295)
T 1xg4_A 226 SAHVAMALYPLSAF 239 (295)
T ss_dssp HTTCSEEEESSHHH
T ss_pred HcCCCEEEEChHHH
Confidence 79999999998654
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-07 Score=92.57 Aligned_cols=140 Identities=18% Similarity=0.153 Sum_probs=109.8
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
..|+...+...+++++.+.++.+.+ .|+.|+|++||+ +++...++++++++++ ++++.++..
T Consensus 133 ~vp~~~~~g~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan 197 (359)
T 1mdl_A 133 PVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYN 197 (359)
T ss_dssp CEEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred CeeeeeecCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 3455444322577888877765544 599999998872 4566678888898887 688888887
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+++.++..++++.++++|++.|- + + + ...+|+..+++++.+++||++++.+.|.++++++++..++|.|
T Consensus 198 ~~~~~~~a~~~~~~l~~~~i~~iE-------~-P-~-~~~~~~~~~~l~~~~~iPI~~de~~~~~~~~~~~i~~~~~d~v 267 (359)
T 1mdl_A 198 QSLDVPAAIKRSQALQQEGVTWIE-------E-P-T-LQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLA 267 (359)
T ss_dssp TCSCHHHHHHHHHHHHHHTCSCEE-------C-C-S-CTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEE-------C-C-C-ChhhHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence 778888889999999999999873 2 1 2 3458999999999999999999999999999999988889999
Q ss_pred Eecccccc
Q psy7343 360 MTAEGNLY 367 (487)
Q Consensus 360 miGRa~l~ 367 (487)
++-.+.++
T Consensus 268 ~ik~~~~G 275 (359)
T 1mdl_A 268 MPDAMKIG 275 (359)
T ss_dssp CCBTTTTT
T ss_pred eecchhhC
Confidence 88654443
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-08 Score=99.91 Aligned_cols=209 Identities=16% Similarity=0.133 Sum_probs=116.0
Q ss_pred hhcCCCceEEec-CCCCCCHHHHHHHHHcCCCeEE---------------------ccceeccccccCcHHHH-H----H
Q psy7343 74 TQLGSPRFILAP-MVDASELPWRLLSRRYGSHLCY---------------------TPMVSAHQFIADKKLRQ-E----I 126 (487)
Q Consensus 74 ~~~~~~~~~LAP-Mag~td~pFR~l~~~~Gadl~~---------------------TEMi~a~~l~~~~~~~~-~----~ 126 (487)
.++ ++++++|| |.+.++ +|+..+.+.|++.+. ++|+++.++.+...... + .
T Consensus 14 ~~l-~npi~~aag~~~~~~-~~~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g~~~~~~~~~~~~~~~~ 91 (311)
T 1ep3_A 14 LDL-KNPIIPASGCFGFGE-EYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMTEKLPW 91 (311)
T ss_dssp EEE-SSSEEECTTSSTTST-TGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHHHHTHHHH
T ss_pred EEC-CCCcEECCCCCCCCH-HHHHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCcccccccCCCCcCHHHHHHHHHHH
Confidence 344 77899999 999886 577665444444444 45677777655442221 1 1
Q ss_pred hhhCCCCCceeeeeccccCCCCCccccccccCCCchHHHHH---HHH-hCCcc------ceeccccchhhhcChhHHHHH
Q psy7343 127 LMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLL---SRR-YGSHL------CYTPMVSAHQFIADKKLRQEI 196 (487)
Q Consensus 127 ~~~~~~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i---~~~-~Ga~l------~~t~~v~~~~Ll~~~~~~~~~ 196 (487)
+.....+.|+++|+... +.. .|... ..+ .|++. |+...-.+..+..+++...++
T Consensus 92 ~~~~~~~~p~~v~l~~~----~~~------------~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~ei 155 (311)
T 1ep3_A 92 LNENFPELPIIANVAGS----EEA------------DYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAAL 155 (311)
T ss_dssp HHHHCTTSCEEEEECCS----SHH------------HHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHH
T ss_pred HHhcCCCCcEEEEEcCC----CHH------------HHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHH
Confidence 22112268999997321 111 12211 122 34332 222111123445566666666
Q ss_pred Hhc--CCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC---------ccc-cccCChHHHHHHH
Q psy7343 197 LMS--TPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH---------YGA-YLQDDWPLLTNLV 263 (487)
Q Consensus 197 l~~--~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr---------~G~-~l~~d~~~i~eiv 263 (487)
++. ...+.||++|+... ..+..++++.+++. +|+|.+-.+- .....|.+ .|+ .....+....+.+
T Consensus 156 i~~v~~~~~~pv~vk~~~~-~~~~~~~a~~l~~~G~d~i~v~~~~-~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i 233 (311)
T 1ep3_A 156 VKACKAVSKVPLYVKLSPN-VTDIVPIAKAVEAAGADGLTMINTL-MGVRFDLKTRQPILANITGGLSGPAIKPVALKLI 233 (311)
T ss_dssp HHHHHHHCSSCEEEEECSC-SSCSHHHHHHHHHTTCSEEEECCCE-EECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCC-hHHHHHHHHHHHHcCCCEEEEeCCC-cccccCcccCCccccCCCCcccCccchHHHHHHH
Confidence 642 12268999999732 12344556666555 7888873210 00000111 011 1122344455777
Q ss_pred HHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 264 ~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
+.+++.+++||++.+ ++.+..++.+.++ +|+|+|++ ||.
T Consensus 234 ~~i~~~~~ipvia~G----GI~~~~d~~~~l~-~GAd~V~v-g~~ 272 (311)
T 1ep3_A 234 HQVAQDVDIPIIGMG----GVANAQDVLEMYM-AGASAVAV-GTA 272 (311)
T ss_dssp HHHHTTCSSCEEECS----SCCSHHHHHHHHH-HTCSEEEE-CTH
T ss_pred HHHHHhcCCCEEEEC----CcCCHHHHHHHHH-cCCCEEEE-CHH
Confidence 778888899999997 6777888888776 79999999 875
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.8e-07 Score=93.76 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=108.2
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeec
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRI 280 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~ 280 (487)
.|+...+...+++.+.+.++.+.+ .++.|+|++|+ +++...++++++++++ ++++.++..-
T Consensus 135 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~d~~l~vDan~ 198 (379)
T 2rdx_A 135 APMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGA----------------DWQSDIDRIRACLPLLEPGEKAMADANQ 198 (379)
T ss_dssp EEBCEECCCSCSHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHGGGSCTTCEEEEECTT
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeccC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 344433433578888887776544 49999999886 3566778899999988 4888888777
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+++.++..++++.++++|+ .|. + + +. +++..+++++.+++||++++.+.+.++++++++...+|.|+
T Consensus 199 ~~~~~~a~~~~~~l~~~~i-~iE-------~-P-~~---~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ 265 (379)
T 2rdx_A 199 GWRVDNAIRLARATRDLDY-ILE-------Q-P-CR---SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICC 265 (379)
T ss_dssp CSCHHHHHHHHHHTTTSCC-EEE-------C-C-SS---SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEE
T ss_pred CCCHHHHHHHHHHHHhCCe-EEe-------C-C-cC---CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEE
Confidence 7888888999999999998 662 2 1 32 89999999999999999999999999999999888899999
Q ss_pred eccccccC
Q psy7343 361 TAEGNLYN 368 (487)
Q Consensus 361 iGRa~l~~ 368 (487)
+-.+.++.
T Consensus 266 ik~~~~GG 273 (379)
T 2rdx_A 266 LKISNLGG 273 (379)
T ss_dssp EETTTTTS
T ss_pred EeccccCC
Confidence 87655554
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.9e-07 Score=93.41 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=107.1
Q ss_pred CHHHHHHHHHhhC-CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~-~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
+++++.+.++.+. +.++.|+|++|++ +++...++++++++++ ++++.++..-+++.++..++
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~ 210 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRP---------------DLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRA 210 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 7888887776554 4599999998873 3566678888888887 68898888777888889999
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
++.++++|++.|- |. + ...+|+..+++++.+++||++++.+.|.++++++++..++|.|++-.+.++..
T Consensus 211 ~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi 279 (371)
T 2ovl_A 211 ARALAPFDLHWIE-------EP--T-IPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGY 279 (371)
T ss_dssp HHHHGGGCCSEEE-------CC--S-CTTCHHHHHHHHHHHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSH
T ss_pred HHHHHhcCCCEEE-------CC--C-CcccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCH
Confidence 9999999999873 21 2 34589999999999999999999999999999999888899999876655553
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.54 E-value=8.1e-07 Score=85.61 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=107.9
Q ss_pred CCeeeeeccCCH--HHHHHHHHhhCCcCcEEEee--cCCCcceeeccCccc-----cc--cCChHHHHHHHHHHhhhccC
Q psy7343 204 RPLIIQFCGNDS--KNLTEAAKLAEPHCDGIDIN--IGCPQMVAKRGHYGA-----YL--QDDWPLLTNLVSSLRQAVQV 272 (487)
Q Consensus 204 ~Pv~Vqi~g~d~--~~~~~aa~~~~~~~d~IdiN--~GcP~~i~~~gr~G~-----~l--~~d~~~i~eiv~~v~~~~~i 272 (487)
..++..+...|+ +++.+.++.+++..|.|+++ .++|.. .|.+-. ++ -.+.....++++++++.+++
T Consensus 5 ~~~~~~i~~~~~~~~~~~~~a~~~~~~ad~iel~~p~sdp~~---DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~ 81 (248)
T 1geq_A 5 GSLIPYLTAGDPDKQSTLNFLLALDEYAGAIELGIPFSDPIA---DGKTIQESHYRALKNGFKLREAFWIVKEFRRHSST 81 (248)
T ss_dssp TEEEEEEETTSSCHHHHHHHHHHHGGGBSCEEEECCCSCCTT---SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCC
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEECCCCCCCCC---CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCC
Confidence 356777765566 68888887775558888887 455532 111000 00 12566678889999988889
Q ss_pred cEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEc-------c-------------------ccC----------C----
Q psy7343 273 PVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHG-------R-------------------TVD----------Q---- 311 (487)
Q Consensus 273 PV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~Vhg-------R-------------------t~~----------~---- 311 (487)
||.+-+.... -.....+.++.+.++|+|+|++|. + +.. .
T Consensus 82 pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~i~ 161 (248)
T 1geq_A 82 PIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVY 161 (248)
T ss_dssp CEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEE
T ss_pred CEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCeEE
Confidence 9888652211 001236788888889999999853 0 000 0
Q ss_pred ---CCCCCCC------CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 312 ---RGMNTGL------ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 312 ---~g~~~g~------~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
..+++|. ...+.++++++.+++||++.|||++.+++.+++ ..|||+|.+|++++..
T Consensus 162 ~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~-~~Gad~vivGsai~~~ 226 (248)
T 1geq_A 162 LVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLL-KEGANGVVVGSALVKI 226 (248)
T ss_dssp EECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEECHHHHHH
T ss_pred EEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHH-HcCCCEEEEcHHHHhh
Confidence 0111222 135688899998899999999999999999998 6899999999998765
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=88.07 Aligned_cols=195 Identities=14% Similarity=0.072 Sum_probs=101.9
Q ss_pred CCceEEecCCCCCCH------HHHHHHHHcCCCeEEccceecccccc-CcHHHHHHhhhCCCCCcee-----eeeccccC
Q psy7343 78 SPRFILAPMVDASEL------PWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMSTPEDRPLI-----IQRTIFPR 145 (487)
Q Consensus 78 ~~~~~LAPMag~td~------pFR~l~~~~Gadl~~TEMi~a~~l~~-~~~~~~~~~~~~~~e~p~~-----vQl~~~~~ 145 (487)
+.|+++|||++.++. +|++.|+++|+..+++||.++ +.. +.....+ +.....+.|++ .|+.
T Consensus 58 ~~P~~iapm~g~~~~~~~~~~~la~~a~~~G~~~~~~~~~~~--le~~~~~~~~q-l~~~~~d~pv~~~~~~~q~~---- 130 (332)
T 1vcf_A 58 KAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRIL--LERPEALRSFR-VRKVAPKALLIANLGLAQLR---- 130 (332)
T ss_dssp SSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHH--HHCTTTHHHHC-CTTTCSSSCEEEEEEGGGGG----
T ss_pred CCceEEeccccCCcchhHHHHHHHHHHHHcCCCEEeCCchhc--ccCCCccceEE-eeccCCCceeecccChhhhh----
Confidence 568999999998864 999999999999999999886 322 2222222 22222356664 3321
Q ss_pred CCCCccccccccCCCchHHHHHHHHhCCccce-e-ccccchhhhcChhH----HHHHHh--cCCCCCCeeee-ec-cCCH
Q psy7343 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCY-T-PMVSAHQFIADKKL----RQEILM--STPEDRPLIIQ-FC-GNDS 215 (487)
Q Consensus 146 ~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~-t-~~v~~~~Ll~~~~~----~~~~l~--~~~~~~Pv~Vq-i~-g~d~ 215 (487)
+ .....+.......|++... . .+. ...+. ++.. ..+.++ .. .+.||++| +. +.++
T Consensus 131 -~-----------~~~~~~~~a~~~~~~~a~~i~~n~~-~~~~~-~~~~~~~~~~~~i~~vr~-~~~Pv~vK~v~~g~~~ 195 (332)
T 1vcf_A 131 -R-----------YGRDDLLRLVEMLEADALAFHVNPL-QEAVQ-RGDTDFRGLVERLAELLP-LPFPVMVKEVGHGLSR 195 (332)
T ss_dssp -T-----------CCHHHHHHHHHHHTCSEEEEECCHH-HHHHT-TSCCCCTTHHHHHHHHCS-CSSCEEEECSSSCCCH
T ss_pred -c-----------cChHHHHHHHhhcCCCceeeccchH-HHHhc-CCCccHHHHHHHHHHHHc-CCCCEEEEecCCCCCH
Confidence 1 1111111222222332110 0 000 00111 1111 123332 23 57899999 43 3344
Q ss_pred HHHHHHHHhhCCc-CcEEEe--ecCCCcc-e--eec---cCcc---ccccCChHHHHHHHHHHhhhc-cCcEEEEeeccc
Q psy7343 216 KNLTEAAKLAEPH-CDGIDI--NIGCPQM-V--AKR---GHYG---AYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQ 282 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~Idi--N~GcP~~-i--~~~---gr~G---~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~ 282 (487)
++ ++.++++ +|+|++ +.|.... + .+. +..+ ......++.+ ..+++.+ ++||++.+
T Consensus 196 e~----a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l----~~v~~~~~~ipvia~G---- 263 (332)
T 1vcf_A 196 EA----ALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAI----LEVREVLPHLPLVASG---- 263 (332)
T ss_dssp HH----HHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHH----HHHHHHCSSSCEEEES----
T ss_pred HH----HHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHH----HHHHHhcCCCeEEEEC----
Confidence 33 5566666 899988 3231000 0 010 0000 0011223333 4455566 79999997
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
++.+..++.+.+. .|||+|++ ||.
T Consensus 264 GI~~~~d~~kal~-~GAd~V~i-gr~ 287 (332)
T 1vcf_A 264 GVYTGTDGAKALA-LGADLLAV-ARP 287 (332)
T ss_dssp SCCSHHHHHHHHH-HTCSEEEE-CGG
T ss_pred CCCCHHHHHHHHH-hCCChHhh-hHH
Confidence 8889999999997 69999999 873
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.50 E-value=5.2e-07 Score=84.44 Aligned_cols=137 Identities=13% Similarity=0.209 Sum_probs=91.6
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeec
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRI 280 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~ 280 (487)
.|+++.+++.+.+++.+.++.+.+. ++.|+++.++|.. .+.++.+++.++ .++.+.
T Consensus 10 ~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~~~------------------~~~i~~ir~~~~~~~~ig~~--- 68 (205)
T 1wa3_A 10 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDA------------------DTVIKELSFLKEKGAIIGAG--- 68 (205)
T ss_dssp HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTH------------------HHHHHHTHHHHHTTCEEEEE---
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCChhH------------------HHHHHHHHHHCCCCcEEEec---
Confidence 5899999999999999999888776 8999998877521 123444555442 333332
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEcccc-------------------CCC-------------CCCC-CCCCHHHHHHH
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTV-------------------DQR-------------GMNT-GLASWEHITAV 327 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~-------------------~~~-------------g~~~-g~~~~~~i~~i 327 (487)
...+..+ ++.+.+.|+|+| +++-.. ... ..+. .....+.++++
T Consensus 69 --~v~~~~~-~~~a~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~l 144 (205)
T 1wa3_A 69 --TVTSVEQ-CRKAVESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAM 144 (205)
T ss_dssp --SCCSHHH-HHHHHHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHH
T ss_pred --ccCCHHH-HHHHHHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHHH
Confidence 2223333 455566788888 633221 000 0000 00124677888
Q ss_pred HhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 328 RKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 328 ~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
++.+ ++||++.|||+ .+++.+++ ..|+|+|.+|++++.
T Consensus 145 ~~~~~~~pvia~GGI~-~~~~~~~~-~~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 145 KGPFPNVKFVPTGGVN-LDNVCEWF-KAGVLAVGVGSALVK 183 (205)
T ss_dssp HTTCTTCEEEEBSSCC-TTTHHHHH-HHTCSCEEECHHHHC
T ss_pred HHhCCCCcEEEcCCCC-HHHHHHHH-HCCCCEEEECccccC
Confidence 8888 89999999996 78999999 789999999999887
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=86.19 Aligned_cols=67 Identities=27% Similarity=0.389 Sum_probs=52.3
Q ss_pred CCHHHHHHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 319 ASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 319 ~~~~~i~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
.+++.++++++..++|++ +.|||.|.+|+.+++ +.|||+|++|++++..++ +.+.++++.+.+.++.
T Consensus 194 ~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~-~aGadgvvvGsai~~~~d--------p~~~~~~l~~~i~~~~ 262 (297)
T 2zbt_A 194 APFELVKWVHDHGRLPVVNFAAGGIATPADAALMM-HLGMDGVFVGSGIFKSGD--------PRKRARAIVRAVAHYN 262 (297)
T ss_dssp CCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHH-HTTCSEEEECGGGGGSSC--------HHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHH-HcCCCEEEEchHHhCCCC--------HHHHHHHHHHHHHHHh
Confidence 456889999998899998 999999999999999 689999999999985432 2244555555555543
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-07 Score=90.92 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.++++|+|.|.++....... ....+++.++++++.+++||+++|+|.+++++.+++ +.|||+|++|++
T Consensus 30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~---~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~-~~Gad~V~lg~~ 105 (253)
T 1thf_D 30 GDPVELGKFYSEIGIDELVFLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELI-LRGADKVSINTA 105 (253)
T ss_dssp TCHHHHHHHHHHTTCCEEEEEESSCSSS---HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH-HTTCSEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEECCchhhc---CCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEChH
Confidence 4788999999999999999986643221 122467889999999999999999999999999999 679999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
++.+|+++.
T Consensus 106 ~l~~p~~~~ 114 (253)
T 1thf_D 106 AVENPSLIT 114 (253)
T ss_dssp HHHCTHHHH
T ss_pred HHhChHHHH
Confidence 999998764
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.1e-07 Score=92.02 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=107.8
Q ss_pred CCeeeeec-cCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 204 RPLIIQFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 204 ~Pv~Vqi~-g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
.|+...+. ..+++++.+.++.+.+ .++.|+|++|+ .+++. .++++++++++ ++++.++..
T Consensus 153 vp~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~-~e~v~avr~a~g~d~~l~vDan 216 (388)
T 2nql_A 153 FPAYVSGLPERTLKARGELAKYWQDRGFNAFKFATPV---------------ADDGP-AAEIANLRQVLGPQAKIAADMH 216 (388)
T ss_dssp EEEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGG---------------CTTCH-HHHHHHHHHHHCTTSEEEEECC
T ss_pred eEeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC---------------CChHH-HHHHHHHHHHhCCCCEEEEECC
Confidence 45554443 3588888887776544 49999999775 14566 78888888877 688888877
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+++.++..++++.++++|++.|. + + + ...+|+..+++++.+++||++++.+.+.++++++++...+|.|
T Consensus 217 ~~~~~~~a~~~~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v 286 (388)
T 2nql_A 217 WNQTPERALELIAEMQPFDPWFAE-------A-P-V-WTEDIAGLEKVSKNTDVPIAVGEEWRTHWDMRARIERCRIAIV 286 (388)
T ss_dssp SCSCHHHHHHHHHHHGGGCCSCEE-------C-C-S-CTTCHHHHHHHHTSCCSCEEECTTCCSHHHHHHHHTTSCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCCCEEE-------C-C-C-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEE
Confidence 778888889999999999999873 2 1 2 3458999999999999999999999999999999977789999
Q ss_pred Eecccc
Q psy7343 360 MTAEGN 365 (487)
Q Consensus 360 miGRa~ 365 (487)
++-...
T Consensus 287 ~ik~~~ 292 (388)
T 2nql_A 287 QPEMGH 292 (388)
T ss_dssp CCCHHH
T ss_pred EecCCC
Confidence 986544
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1e-06 Score=90.10 Aligned_cols=139 Identities=10% Similarity=0.125 Sum_probs=110.1
Q ss_pred CCeeeeeccCCHHHHHHHHHhhC-CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeec
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRI 280 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~-~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~ 280 (487)
.|+...+.+.+++++.+.++.+. +.|+.|+|++|+ +++...++++++++++ ++++.+...-
T Consensus 131 v~~~~~i~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDan~ 194 (369)
T 2p8b_A 131 FPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGT----------------NVKEDVKRIEAVRERVGNDIAIRVDVNQ 194 (369)
T ss_dssp EECCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred eeeeEEecCCChHHHHHHHHHHHHcCcCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 45555666678888887776554 458999998774 3566678888888887 5788887766
Q ss_pred ccccccHH-HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 281 YQDVNKTV-EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 281 ~~d~~~~~-e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+++.++.. ++++.++++|++.|. |. + ...+|+..+++++.+++||++++.+.+.+++.++++...+|.|
T Consensus 195 ~~~~~~a~~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v 264 (369)
T 2p8b_A 195 GWKNSANTLTALRSLGHLNIDWIE-------QP--V-IADDIDAMAHIRSKTDLPLMIDEGLKSSREMRQIIKLEAADKV 264 (369)
T ss_dssp TTBSHHHHHHHHHTSTTSCCSCEE-------CC--B-CTTCHHHHHHHHHTCCSCEEESTTCCSHHHHHHHHHHTCCSEE
T ss_pred CCCHHHHHHHHHHHHHhCCCcEEE-------CC--C-CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEE
Confidence 78888888 999999999999774 21 2 3457999999999999999999999999999999987889999
Q ss_pred EeccccccC
Q psy7343 360 MTAEGNLYN 368 (487)
Q Consensus 360 miGRa~l~~ 368 (487)
++-..-++.
T Consensus 265 ~ik~~~~GG 273 (369)
T 2p8b_A 265 NIKLMKCGG 273 (369)
T ss_dssp EECHHHHTS
T ss_pred EeecchhCC
Confidence 987655444
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-07 Score=97.27 Aligned_cols=196 Identities=15% Similarity=0.156 Sum_probs=102.0
Q ss_pred CCceEEecCCCCCCHH-------HHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCc
Q psy7343 78 SPRFILAPMVDASELP-------WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPR 150 (487)
Q Consensus 78 ~~~~~LAPMag~td~p-------FR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~ 150 (487)
+.++++||| |+++++ |++.|+++|+..++|+|.+.. .+.+..... .|..+|+... .+..
T Consensus 71 ~~Pi~iAPm-g~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~---------ieev~~~~~-~~~~~QLy~~---~d~~ 136 (370)
T 1gox_A 71 SMPIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTLSSWATSS---------VEEVASTGP-GIRFFQLYVY---KDRN 136 (370)
T ss_dssp SSSEEECCC-SCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSC---------HHHHHTTCC-CCEEEEECCB---SSHH
T ss_pred CCceeEccc-chhhhccchHHHHHHHHHHHcCCCeeccCCCCCC---------HHHHHhhcC-CCceEEEecC---CCch
Confidence 568999999 999998 999999999999999998541 122222212 6788997422 1110
Q ss_pred cc---c--ccccCC------CchH-----HHHHHHHhCCcc------ceec------cccchhh------hcChhHHHHH
Q psy7343 151 FI---L--APMVDA------SELP-----WRLLSRRYGSHL------CYTP------MVSAHQF------IADKKLRQEI 196 (487)
Q Consensus 151 ~~---l--Apma~~------td~~-----fr~i~~~~Ga~l------~~t~------~v~~~~L------l~~~~~~~~~ 196 (487)
.. + +-.+|+ .|.+ .+.+...++... ...+ ...+..+ ..++....+.
T Consensus 137 ~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~ 216 (370)
T 1gox_A 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKD 216 (370)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHH
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHH
Confidence 00 0 000010 0111 011111111000 0000 0011111 1223222122
Q ss_pred Hh--cCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCc
Q psy7343 197 LM--STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 197 l~--~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iP 273 (487)
+. ....+.||++|... +++ .++.+.++ +|+|.++... - +. ..++ ..+++.+.++.+.+.. ++|
T Consensus 217 i~~l~~~~~~pv~vK~~~-~~e----~a~~a~~~Gad~I~vs~~g-g---r~-~~~~--~~~~~~l~~v~~~~~~--~ip 282 (370)
T 1gox_A 217 VAWLQTITSLPILVKGVI-TAE----DARLAVQHGAAGIIVSNHG-A---RQ-LDYV--PATIMALEEVVKAAQG--RIP 282 (370)
T ss_dssp HHHHHHHCCSCEEEECCC-SHH----HHHHHHHTTCSEEEECCGG-G---TS-STTC--CCHHHHHHHHHHHTTT--SSC
T ss_pred HHHHHHHhCCCEEEEecC-CHH----HHHHHHHcCCCEEEECCCC-C---cc-CCCc--ccHHHHHHHHHHHhCC--CCE
Confidence 21 11236899998763 333 23444444 7888883110 0 00 0111 2345555555443321 699
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
|++.+ ++.+..++.+.+. .|+|+|+| ||
T Consensus 283 via~G----GI~~~~D~~k~l~-~GAdaV~i-Gr 310 (370)
T 1gox_A 283 VFLDG----GVRRGTDVFKALA-LGAAGVFI-GR 310 (370)
T ss_dssp EEEES----SCCSHHHHHHHHH-HTCSEEEE-CH
T ss_pred EEEEC----CCCCHHHHHHHHH-cCCCEEee-cH
Confidence 99997 8888899998887 89999999 77
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.44 E-value=5.2e-06 Score=82.27 Aligned_cols=68 Identities=29% Similarity=0.433 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 318 LASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
..+++.++++++.+++||+ +.|||.|++|+.+++ ..|||+|++|++++..++. .+.++++.+.+..|.
T Consensus 193 ~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~-~~GAdgVlVGsai~~a~dp--------~~~~~~l~~ai~~~~ 262 (297)
T 4adt_A 193 RAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCM-QLGMDGVFVGSGIFESENP--------QKMASSIVMAVSNFN 262 (297)
T ss_dssp TCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHH-HTTCSCEEESHHHHTSSCH--------HHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHH-HcCCCEEEEhHHHHcCCCH--------HHHHHHHHHHHHhhC
Confidence 3567889999999899987 899999999999999 6899999999999875432 234555566566654
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-07 Score=90.42 Aligned_cols=85 Identities=21% Similarity=0.328 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|+|.|.++....... ....+++.++++++.+++||+++|+|++.+++++++ +.|||+|++|++
T Consensus 31 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~---~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~-~~Gad~V~lg~~ 106 (252)
T 1ka9_F 31 GDPVEAARAYDEAGADELVFLDISATHE---ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLL-LSGADKVSVNSA 106 (252)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTT---CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH-HHTCSEEEECHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---CccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHH-HcCCCEEEEChH
Confidence 4788999999999999999976543221 122457889999999999999999999999999999 679999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
++.+|+++.
T Consensus 107 ~l~~p~~~~ 115 (252)
T 1ka9_F 107 AVRRPELIR 115 (252)
T ss_dssp HHHCTHHHH
T ss_pred HHhCcHHHH
Confidence 999998754
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.42 E-value=1e-06 Score=90.57 Aligned_cols=141 Identities=11% Similarity=0.056 Sum_probs=113.8
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEe
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKI 278 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKi 278 (487)
...|+..++.+.+++.+.+.++.+ ++.++.|.+++|| +++.-.+.++++++++ ++++.+..
T Consensus 133 ~~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiK~G~----------------~~~~d~~~v~avR~a~g~~~~l~vDa 196 (378)
T 3eez_A 133 TPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGG----------------DVERDIARIRDVEDIREPGEIVLYDV 196 (378)
T ss_dssp SCEEBBCCBCSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHTTSCCTTCEEEEEC
T ss_pred CeEEEEEEecCCCHHHHHHHHHHHHhCCCCEEEeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEEC
Confidence 346777777778899888877654 4458999998886 3555677888899987 57888888
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
.-+|+..+..++++.+++.|+ .|- | + + .+++..+++++.+++||++++.+.+.+++.++++..++|.
T Consensus 197 n~~~~~~~a~~~~~~l~~~~i-~iE-------q-P-~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~ 263 (378)
T 3eez_A 197 NRGWTRQQALRVMRATEDLHV-MFE-------Q-P-G---ETLDDIAAIRPLHSAPVSVDECLVTLQDAARVARDGLAEV 263 (378)
T ss_dssp TTCCCHHHHHHHHHHTGGGTC-CEE-------C-C-S---SSHHHHHHTGGGCCCCEEECTTCCSHHHHHHHHHTTCCSE
T ss_pred CCCCCHHHHHHHHHHhccCCe-EEe-------c-C-C---CCHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCE
Confidence 778888888999999999987 652 2 1 2 2799999999999999999999999999999998788999
Q ss_pred EEeccccccCccc
Q psy7343 359 VMTAEGNLYNPAL 371 (487)
Q Consensus 359 VmiGRa~l~~P~l 371 (487)
|++-.+.++..+-
T Consensus 264 v~ik~~~~GGit~ 276 (378)
T 3eez_A 264 FGIKLNRVGGLTR 276 (378)
T ss_dssp EEEEHHHHTSHHH
T ss_pred EEeCchhcCCHHH
Confidence 9998877666443
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=98.42 E-value=9.8e-07 Score=90.63 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=108.7
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
..|+...+...+++.+.+.++.+.+ .|+.|++++|+| +++...++++++++++ ++++.++..
T Consensus 134 ~v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan 198 (378)
T 2qdd_A 134 PVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGS---------------DPAQDIARIEAISAGLPDGHRVTFDVN 198 (378)
T ss_dssp CEEBEEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHSCCTTCEEEEECT
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHhhhheeecCCCC---------------ChHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3455544544688888887766544 499999998884 4566778888999887 578888876
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+++.++..++++.++ +|+ .| +|. +. +|+..+++++.+++||++++.+.+.++++++++...+|.|
T Consensus 199 ~~~~~~~a~~~~~~l~-~~i-~i-------EqP--~~---d~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v 264 (378)
T 2qdd_A 199 RAWTPAIAVEVLNSVR-ARD-WI-------EQP--CQ---TLDQCAHVARRVANPIMLDECLHEFSDHLAAWSRGACEGV 264 (378)
T ss_dssp TCCCHHHHHHHHTSCC-CCC-EE-------ECC--SS---SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHhC-CCc-EE-------EcC--CC---CHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCEE
Confidence 6777778888888888 888 54 221 32 8999999999999999999999999999999988889999
Q ss_pred EeccccccCcc
Q psy7343 360 MTAEGNLYNPA 370 (487)
Q Consensus 360 miGRa~l~~P~ 370 (487)
++-...++.++
T Consensus 265 ~ik~~~~GGi~ 275 (378)
T 2qdd_A 265 KIKPNRVGGLT 275 (378)
T ss_dssp EECHHHHTSHH
T ss_pred EecccccCCHH
Confidence 99776665543
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-06 Score=100.09 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC------CCCCCCCHHHHHHH
Q psy7343 255 DWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG------MNTGLASWEHITAV 327 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g------~~~g~~~~~~i~~i 327 (487)
+++.+.++++.+++.. ++||++|+-.. ....+.++.++++|+|+|.|.|....... ...|.+....+.++
T Consensus 976 s~edl~~~I~~Lk~~~~~~PV~VKlv~~---~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev 1052 (1479)
T 1ea0_A 976 SIEDLAQLIYDLKQINPDAKVTVKLVSR---SGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEV 1052 (1479)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEEECC---TTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcCC---CChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHH
Confidence 4677889999999887 89999997322 24556788899999999999765321110 01233344666666
Q ss_pred HhhC-------CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 328 RKAL-------TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 328 ~~~~-------~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.+.+ ++|||+.|||.|..|+.+++ ..|||+|++||+++..
T Consensus 1053 ~~al~~~glr~~VpVIAdGGIrtG~DVakAL-aLGAdaV~iGTafL~a 1099 (1479)
T 1ea0_A 1053 HQVLTLNRLRHRVRLRTDGGLKTGRDIVIAA-MLGAEEFGIGTASLIA 1099 (1479)
T ss_dssp HHHHHTTTCTTTSEEEEESSCCSHHHHHHHH-HTTCSEEECCHHHHHH
T ss_pred HHHHHHcCCCCCceEEEECCCCCHHHHHHHH-HcCCCeeeEcHHHHHH
Confidence 6643 79999999999999999999 7999999999999763
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-07 Score=99.09 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=107.4
Q ss_pred CCceEEecCCC---C----CCHHHHHHHHH--cCCCeEEccceec-cccccCcHHHHHHhhhC-CCCCceeeeeccccCC
Q psy7343 78 SPRFILAPMVD---A----SELPWRLLSRR--YGSHLCYTPMVSA-HQFIADKKLRQEILMST-PEDRPLIIQRTIFPRL 146 (487)
Q Consensus 78 ~~~~~LAPMag---~----td~pFR~l~~~--~Gadl~~TEMi~a-~~l~~~~~~~~~~~~~~-~~e~p~~vQl~~~~~~ 146 (487)
+.++++|||++ + ++.+|++.|++ +|+.+++|||.+. -..+ .... ..+.|..+|+...
T Consensus 189 ~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v---------~~~~~~~~~~~~~QLy~~--- 256 (511)
T 1kbi_A 189 DVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI---------IEAAPSDKQIQWYQLYVN--- 256 (511)
T ss_dssp SSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHH---------HHTCCCSSCCEEEEECCC---
T ss_pred CCCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHH---------HhhcCCCCCCeEEEEeec---
Confidence 56899999998 4 58999999999 9999999999433 2211 1122 2457889997422
Q ss_pred CCCccccc------cccCCC------chH---HHH--HHHHhCCccceecc-----------ccc-hhhh---cChhHHH
Q psy7343 147 GSPRFILA------PMVDAS------ELP---WRL--LSRRYGSHLCYTPM-----------VSA-HQFI---ADKKLRQ 194 (487)
Q Consensus 147 g~~~~~lA------pma~~t------d~~---fr~--i~~~~Ga~l~~t~~-----------v~~-~~Ll---~~~~~~~ 194 (487)
..+.+.+ -++++. |.+ +|. +..++. ++... ..+ ..++ .++....
T Consensus 257 -~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~---~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~ 332 (511)
T 1kbi_A 257 -SDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS---NTKAGPKAMKKTNVEESQGASRALSKFIDPSLTW 332 (511)
T ss_dssp -SSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHT---TCC-------CCCCSSCCCGGGGCBTTBCTTCCH
T ss_pred -CCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCC---CCcccccccccccccccccHHHHHhhccChHhHH
Confidence 1111111 111110 111 111 111111 11000 000 1112 2333222
Q ss_pred HHHh--cCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHhh
Q psy7343 195 EILM--STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQ 268 (487)
Q Consensus 195 ~~l~--~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~ 268 (487)
+.++ ....+.||++|..+ +. +.|+.++++ +|+|.+.. || |.++ ...++.+.++.+++++
T Consensus 333 ~~i~~lr~~~~~PvivKgv~-~~----e~A~~a~~aGad~I~vs~--------hg--G~~~d~~~~~~~~l~~v~~~v~~ 397 (511)
T 1kbi_A 333 KDIEELKKKTKLPIVIKGVQ-RT----EDVIKAAEIGVSGVVLSN--------HG--GRQLDFSRAPIEVLAETMPILEQ 397 (511)
T ss_dssp HHHHHHHHHCSSCEEEEEEC-SH----HHHHHHHHTTCSEEEECC--------TT--TTSSTTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCcEEEEeCC-CH----HHHHHHHHcCCCEEEEcC--------CC--CccCCCCCchHHHHHHHHHHHHh
Confidence 3332 11236899999544 23 335555555 78887721 11 1121 2345667777666643
Q ss_pred ---hccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 269 ---AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 269 ---~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
.-++||++.+ ++.+..++++.+. .|||+|+| ||
T Consensus 398 ~~~~~~ipVia~G----GI~~g~Dv~kaLa-lGAdaV~i-Gr 433 (511)
T 1kbi_A 398 RNLKDKLEVFVDG----GVRRGTDVLKALC-LGAKGVGL-GR 433 (511)
T ss_dssp TTCBTTBEEEEES----SCCSHHHHHHHHH-HTCSEEEE-CH
T ss_pred hccCCCcEEEEEC----CCCCHHHHHHHHH-cCCCEEEE-CH
Confidence 1269999997 8889999999997 79999999 87
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-06 Score=83.26 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=104.8
Q ss_pred CCeeeeeccCC--HHHHHHHHHhhCCc-CcEEEeecC--CCcc---eeeccCccccc--cCChHHHHHHHHHHhhh-ccC
Q psy7343 204 RPLIIQFCGND--SKNLTEAAKLAEPH-CDGIDINIG--CPQM---VAKRGHYGAYL--QDDWPLLTNLVSSLRQA-VQV 272 (487)
Q Consensus 204 ~Pv~Vqi~g~d--~~~~~~aa~~~~~~-~d~IdiN~G--cP~~---i~~~gr~G~~l--~~d~~~i~eiv~~v~~~-~~i 272 (487)
..++.-+-..| .+.+.+.++.++++ +|.|||.+- -|.. ...+.. -.+| --+.+.+.++++.+|+. .++
T Consensus 18 ~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~-~~AL~~G~~~~~~~~~v~~ir~~~~~~ 96 (267)
T 3vnd_A 18 GAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGAN-LRSLAAGTTSSDCFDIITKVRAQHPDM 96 (267)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 34555555334 48899999888776 899988632 2321 111100 0011 13567778889999987 789
Q ss_pred cEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEcc--------------------------cc-----------C----
Q psy7343 273 PVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGR--------------------------TV-----------D---- 310 (487)
Q Consensus 273 PV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgR--------------------------t~-----------~---- 310 (487)
|+.+-+-.+. -......+++.+.++|+|++.++.- |. .
T Consensus 97 Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY 176 (267)
T 3vnd_A 97 PIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTY 176 (267)
T ss_dssp CEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEE
T ss_pred CEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEE
Confidence 9988641111 0113477888888889999887320 10 0
Q ss_pred --CCCCCCCCC------CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 311 --QRGMNTGLA------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 311 --~~g~~~g~~------~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
...+.+|.. ..+.++++++..++||++.|||+|++++.+.+ ..|||+|.+|+++.
T Consensus 177 ~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~-~~gADgvVVGSaiv 239 (267)
T 3vnd_A 177 LLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAI-KAGAAGAISGSAVV 239 (267)
T ss_dssp ESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHH-HTTCSEEEECHHHH
T ss_pred EEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHH-HcCCCEEEECHHHH
Confidence 011122221 24788999999999999999999999999777 68999999999765
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=83.22 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=99.5
Q ss_pred CCeeeeeccCC--HHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCc-----cccc--cCChHHHHHHHHHHhhhccCc
Q psy7343 204 RPLIIQFCGND--SKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY-----GAYL--QDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 204 ~Pv~Vqi~g~d--~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~-----G~~l--~~d~~~i~eiv~~v~~~~~iP 273 (487)
..++.-+...+ .+.+.+.++.+++. .|.|+++.-+...+. .|.+ ...+ -.+.+...++++++++.+++|
T Consensus 18 ~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~-dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~P 96 (262)
T 1rd5_A 18 TAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYI-DGPIIQASVARALASGTTMDAVLEMLREVTPELSCP 96 (262)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTT-SCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSC
T ss_pred ceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCccc-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 34555554334 47888888877766 899999765421111 1100 0000 126777888999999888999
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEc--------------------------cccC-----------------
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG--------------------------RTVD----------------- 310 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vhg--------------------------Rt~~----------------- 310 (487)
|.+..+....... ..+.+.++|+|+|+++. .+..
T Consensus 97 v~~m~~~~~~~~~---~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~ 173 (262)
T 1rd5_A 97 VVLLSYYKPIMFR---SLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLV 173 (262)
T ss_dssp EEEECCSHHHHSC---CTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEE
T ss_pred EEEEecCcHHHHH---HHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEEEe
Confidence 9887532210000 01124555666555422 1100
Q ss_pred CCCCCCCC-----C-CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 311 QRGMNTGL-----A-SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 311 ~~g~~~g~-----~-~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
...+++|. . ..+.++++++..++||++.|||+|++++.+++ ..|||+|++|+++...
T Consensus 174 s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~-~~GAdgvvVGSai~~~ 236 (262)
T 1rd5_A 174 SVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIA-QWGADGVIIGSAMVRQ 236 (262)
T ss_dssp CSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEECHHHHHH
T ss_pred cCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEECCcCCHHHHHHHH-HcCCCEEEEChHHHhH
Confidence 01122332 1 23688899998999999999999999999998 6899999999987654
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=105.33 Aligned_cols=196 Identities=10% Similarity=0.089 Sum_probs=121.1
Q ss_pred CCCCccccccccCC-CchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHh----cCCCCCCeeeeeccCCHH---
Q psy7343 146 LGSPRFILAPMVDA-SELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILM----STPEDRPLIIQFCGNDSK--- 216 (487)
Q Consensus 146 ~g~~~~~lApma~~-td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~d~~--- 216 (487)
+|..|+++++|+.. ++..+-....|.|. +. +.|.+. ..++..++-++ ....+.|+.|++.-.++.
T Consensus 587 lg~~PIi~~gM~~~~~~~~lvaAvsnAGglg~-----l~~~~~-~~~e~l~~~I~~~~~~t~~~~~~gvN~~~~~~~~~~ 660 (2051)
T 2uv8_G 587 IGRPPLLVPGMTPCTVSPDFVAATTNAGYTIE-----LAGGGY-FSAAGMTAAIDSVVSQIEKGSTFGINLIYVNPFMLQ 660 (2051)
T ss_dssp HSSCSEEECCCHHHHTCHHHHHHHHHTTCEEE-----EEGGGC-CSHHHHHHHHHHHHHHSCTTCCEEEEEETTCTTHHH
T ss_pred hCccceecCCCccccccHHHHHHHHcCCcEEE-----EccCCC-CCHHHHHHHHHHHHHhcCCCCceEEEEeecChhhhh
Confidence 56789999999944 47777777777773 32 211111 12222222221 224457999997644432
Q ss_pred -HHHHHHHhh-CCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHH
Q psy7343 217 -NLTEAAKLA-EPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 217 -~~~~aa~~~-~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
.+ ++.+.+ ++. .++|.+..|.| .++...++++.+ +++++... .........+.
T Consensus 661 ~~~-~~~~~~~~~gv~i~~v~~~ag~p---------------~~~~~~~~i~~l----G~~vi~~~---~~~~~a~~~~~ 717 (2051)
T 2uv8_G 661 WGI-PLIKELRSKGYPIQFLTIGAGVP---------------SLEVASEYIETL----GLKYLGLK---PGSIDAISQVI 717 (2051)
T ss_dssp HHH-HHHHHHHHTTCSEEEEEEESSCC---------------CHHHHHHHHHHS----CCSCEEEC---CCSHHHHHHHH
T ss_pred hhH-HHHHHHHHcCCCcceEEecCCCC---------------chhhHHHHHHHc----CCEEEEec---CchHHHHHHHH
Confidence 22 444443 333 23344444433 234444555443 88887643 24445666778
Q ss_pred HHHHcCCcEE-EEEccccCCCCCCCCCC-----CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH----------hcCC
Q psy7343 293 MLERAGCQLL-AVHGRTVDQRGMNTGLA-----SWEHITAVRKALTIPVIANGNIQCLADVEACLA----------QTGV 356 (487)
Q Consensus 293 ~le~~G~d~I-~VhgRt~~~~g~~~g~~-----~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~----------~~Ga 356 (487)
..+++|+|.+ ++..-+.+. |+..|.. .+..+.++++.++||||+.|||.+.+++..+|. ..||
T Consensus 718 ~~~~~g~d~~ii~~~~G~ea-GGH~g~~d~~~~~l~l~~~v~~~~~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lga 796 (2051)
T 2uv8_G 718 NIAKAHPNFPIALQWTGGRG-GGHHSFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPF 796 (2051)
T ss_dssp HHHHHSTTSCEEEEECCSSC-SEECCSCCSSHHHHHHHHHHTTCTTBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCC
T ss_pred HHHHhCCCceeEEEEEccCc-CCCCCcccccccHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHccccccccCccCCCC
Confidence 8889999994 332222222 2333432 235688999999999999999999999999994 5799
Q ss_pred cEEEeccccccCccc
Q psy7343 357 AGVMTAEGNLYNPAL 371 (487)
Q Consensus 357 d~VmiGRa~l~~P~l 371 (487)
|||++|+.++.-..-
T Consensus 797 dGv~~GTrf~~t~Ea 811 (2051)
T 2uv8_G 797 DGFLFGSRVMIAKEV 811 (2051)
T ss_dssp SCEECSGGGTTSTTS
T ss_pred ceeeechHHHhCccc
Confidence 999999999887543
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=3.4e-06 Score=86.67 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHH
Q psy7343 213 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e 289 (487)
.+++++.+.++.+.+ .++.|.|++|++. ++ . ..+++...++++++++++ ++++.+...-+++.++..+
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~-------~~-~-~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~ 218 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPP-------VS-W-APDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALA 218 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTT-------ST-T-CCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCc-------cc-c-ccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHH
Confidence 578888887776544 4999999999853 12 2 247888889999999987 5888888766778888899
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCC-HHHHHHHHHhcCCcEEEeccc
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC-LADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s-~~da~~~l~~~Gad~VmiGRa 364 (487)
+++.++++|++.|-- + + ...+++..+++++.+++||++.+.+.| .++++++++...+|.|++--.
T Consensus 219 ~~~~l~~~~i~~iE~--------P-~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~ 284 (382)
T 1rvk_A 219 LGRGLEKLGFDWIEE--------P-M-DEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVN 284 (382)
T ss_dssp HHHHHHTTTCSEEEC--------C-S-CTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHH
T ss_pred HHHHHHhcCCCEEeC--------C-C-ChhhHHHHHHHHhhCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCch
Confidence 999999999998742 1 2 235799999999999999999999999 999999998788999998543
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-06 Score=100.36 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=84.4
Q ss_pred CChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC------CCCCCCCHHHHHH
Q psy7343 254 DDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG------MNTGLASWEHITA 326 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g------~~~g~~~~~~i~~ 326 (487)
.+++.+.++++.+++.. ++||++|+-.. ....+.++.++++|+|+|.|.|......+ ...|.+....+.+
T Consensus 1010 ~s~edl~~~I~~Lk~~~~~~PV~VKlv~~---~gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~e 1086 (1520)
T 1ofd_A 1010 YSIEDLAQLIYDLHQINPEAQVSVKLVAE---IGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTE 1086 (1520)
T ss_dssp SSHHHHHHHHHHHHHHCTTSEEEEEEECS---TTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEecCC---CChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHH
Confidence 35677888999999887 89999997321 24556788899999999999776422110 0123334466666
Q ss_pred HHhhC-------CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 327 VRKAL-------TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 327 i~~~~-------~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
+.+.+ ++|||+.|||.|..|+.+++ ..|||+|++||++|...
T Consensus 1087 v~~al~~~glr~~IpVIAdGGIrtG~DVakAL-aLGAdaV~iGTafL~al 1135 (1520)
T 1ofd_A 1087 VHRVLMENQLRDRVLLRADGGLKTGWDVVMAA-LMGAEEYGFGSIAMIAE 1135 (1520)
T ss_dssp HHHHHHHTTCGGGCEEEEESSCCSHHHHHHHH-HTTCSEEECSHHHHHHT
T ss_pred HHHHHHhcCCCCCceEEEECCCCCHHHHHHHH-HcCCCeeEEcHHHHHHH
Confidence 65543 69999999999999999999 79999999999987754
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=4e-06 Score=85.69 Aligned_cols=137 Identities=15% Similarity=0.191 Sum_probs=105.5
Q ss_pred CeeeeeccCCHHHHHHHHHhh-C-CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeec
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLA-E-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRI 280 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~-~-~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~ 280 (487)
|+..-+...+++.+.+.++.+ + ..|+.|.|++|++ +++...++++++++++ ++++.+...-
T Consensus 133 ~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~ 197 (370)
T 1nu5_A 133 PIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGAR---------------TPAQDLEHIRSIVKAVGDRASVRVDVNQ 197 (370)
T ss_dssp EBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGCEEEEECTT
T ss_pred EeeEEecCCCHHHHHHHHHHHHHhCCccEEEEecCCC---------------ChHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 333334445788888777655 4 4599999998873 3455567788888876 4778777766
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+++.++..++++.++++|++.|. | + . ...+++..+++++.+++||++.+.+.+.+++.++++...+|.|+
T Consensus 198 ~~~~~~a~~~~~~l~~~~i~~iE-------q-P-~-~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ 267 (370)
T 1nu5_A 198 GWDEQTASIWIPRLEEAGVELVE-------Q-P-V-PRANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDAFS 267 (370)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEE-------C-C-S-CTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred CCCHHHHHHHHHHHHhcCcceEe-------C-C-C-CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEE
Confidence 77888889999999999999863 2 1 2 34579999999999999999999999999999999877899999
Q ss_pred eccccc
Q psy7343 361 TAEGNL 366 (487)
Q Consensus 361 iGRa~l 366 (487)
+--..+
T Consensus 268 ik~~~~ 273 (370)
T 1nu5_A 268 LKLCNM 273 (370)
T ss_dssp ECHHHH
T ss_pred Echhhc
Confidence 854433
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.36 E-value=6.3e-06 Score=80.67 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=104.7
Q ss_pred CeeeeeccCCH--HHHHHHHHhhCCc-CcEEEeecCCCcceee-ccCcc-----ccc--cCChHHHHHHHHHHhhh-ccC
Q psy7343 205 PLIIQFCGNDS--KNLTEAAKLAEPH-CDGIDINIGCPQMVAK-RGHYG-----AYL--QDDWPLLTNLVSSLRQA-VQV 272 (487)
Q Consensus 205 Pv~Vqi~g~d~--~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~-~gr~G-----~~l--~~d~~~i~eiv~~v~~~-~~i 272 (487)
.++.-+...|+ +...+.++.+++. .|.|+++. |..-.. +|..- ..+ --+.+...++++++++. +++
T Consensus 18 ~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~--P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 95 (268)
T 1qop_A 18 AFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGV--PFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTI 95 (268)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEEC--CCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSS
T ss_pred eEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 45555544344 8888888888776 89999854 321000 00000 000 01355666889999988 799
Q ss_pred cEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEccccC-----------------------------------------
Q psy7343 273 PVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRTVD----------------------------------------- 310 (487)
Q Consensus 273 PV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt~~----------------------------------------- 310 (487)
||.+-+-... ......++++.+.++|+|+|++|.-+.+
T Consensus 96 Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~ 175 (268)
T 1qop_A 96 PIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTY 175 (268)
T ss_dssp CEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEE
T ss_pred CEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEE
Confidence 9877321110 1123467888888889998887441100
Q ss_pred --CCCCCCCC------CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 311 --QRGMNTGL------ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 311 --~~g~~~g~------~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
...+++|. ...+.++++++..++||++.|||+|++++.+++ ..|||+|++|+++...
T Consensus 176 ~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~-~agAD~vVVGSai~~~ 240 (268)
T 1qop_A 176 LLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAV-RAGAAGAISGSAIVKI 240 (268)
T ss_dssp EESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHHH
T ss_pred EEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHH-HcCCCEEEEChHHhhh
Confidence 00023332 135889999999999999999999999999988 6899999999987643
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-06 Score=84.80 Aligned_cols=161 Identities=12% Similarity=0.183 Sum_probs=102.1
Q ss_pred Ceeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCC--Ccc---eeeccCccccc--cCChHHHHHHHHHHhhh-ccCc
Q psy7343 205 PLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGC--PQM---VAKRGHYGAYL--QDDWPLLTNLVSSLRQA-VQVP 273 (487)
Q Consensus 205 Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~Gc--P~~---i~~~gr~G~~l--~~d~~~i~eiv~~v~~~-~~iP 273 (487)
.++.=+- | .+.+...++++.+++. +|.|||.+-- |.. +..+.. -.+| --+.+.+.++++++|+. .++|
T Consensus 21 ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~-~rAL~~G~~~~~~~~~v~~~r~~~~~~P 99 (271)
T 3nav_A 21 AFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGAN-LRALAAKTTPDICFELIAQIRARNPETP 99 (271)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHCTTSC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 3444343 3 4568888998888775 8999985432 211 111000 0011 13566778889999887 7899
Q ss_pred EEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEc--------------------------cccC----------------
Q psy7343 274 VSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHG--------------------------RTVD---------------- 310 (487)
Q Consensus 274 V~vKiR~~~-d~~~~~e~a~~le~~G~d~I~Vhg--------------------------Rt~~---------------- 310 (487)
+++-+-.+. ...-..++++.+.++|+|++.+.. .+..
T Consensus 100 ivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~ 179 (271)
T 3nav_A 100 IGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYL 179 (271)
T ss_dssp EEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEE
T ss_pred EEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEE
Confidence 988642111 112357778888888888877611 1100
Q ss_pred -CCCCCCCCC------CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 311 -QRGMNTGLA------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 311 -~~g~~~g~~------~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
...+.+|.. ..+.++++++..++||+..+||+|++++.+.+ ..|||+|.+|+++..
T Consensus 180 vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~-~~gADgvIVGSAiv~ 242 (271)
T 3nav_A 180 LSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAI-EAGAAGAISGSAVVK 242 (271)
T ss_dssp CCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHH-HTTCSEEEESHHHHH
T ss_pred EeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence 011123322 13778999999999999999999999999777 689999999998763
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-06 Score=86.72 Aligned_cols=144 Identities=10% Similarity=0.103 Sum_probs=112.4
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCCh-HHHHHHHHHHhhhc--cCcEEEE
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDW-PLLTNLVSSLRQAV--QVPVSCK 277 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~-~~i~eiv~~v~~~~--~iPV~vK 277 (487)
..|+...+. +.+++++.+.++.+.+ .|+.|++++ ||. |. ++ +...++++++++++ ++++.++
T Consensus 133 ~vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~-spv--------G~----~~~~~~~e~v~avr~a~G~d~~l~vD 199 (401)
T 2hzg_A 133 GKRPYASLLFGDTPQETLERARAARRDGFAAVKFGW-GPI--------GR----GTVAADADQIMAAREGLGPDGDLMVD 199 (401)
T ss_dssp CBEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEES-TTT--------TS----SCHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred ceEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcC-CCC--------CC----CHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 456654443 5688888887765544 599999985 552 21 45 66678888898887 6888888
Q ss_pred eeccc--ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh-hCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 278 IRIYQ--DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK-ALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 278 iR~~~--d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~-~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
..-++ +.++..++++.++++|++.|- +. + ...+|+..+++++ .+++||++++.+.|.++++++++..
T Consensus 200 an~~~~~~~~~a~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~~iPI~~dE~~~~~~~~~~~i~~~ 269 (401)
T 2hzg_A 200 VGQIFGEDVEAAAARLPTLDAAGVLWLE-------EP--F-DAGALAAHAALAGRGARVRIAGGEAAHNFHMAQHLMDYG 269 (401)
T ss_dssp CTTTTTTCHHHHHTTHHHHHHTTCSEEE-------CC--S-CTTCHHHHHHHHTTCCSSEEEECTTCSSHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEE-------CC--C-CccCHHHHHHHHhhCCCCCEEecCCcCCHHHHHHHHHCC
Confidence 87778 888889999999999999873 21 2 3458999999999 8999999999999999999999888
Q ss_pred CCcEEEeccccccCc
Q psy7343 355 GVAGVMTAEGNLYNP 369 (487)
Q Consensus 355 Gad~VmiGRa~l~~P 369 (487)
++|.|++-...++..
T Consensus 270 ~~d~v~ik~~~~GGi 284 (401)
T 2hzg_A 270 RIGFIQIDCGRIGGL 284 (401)
T ss_dssp CCSEEEECHHHHTSH
T ss_pred CCCEEEeCcchhCCH
Confidence 899999876555543
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.4e-06 Score=85.45 Aligned_cols=137 Identities=12% Similarity=0.132 Sum_probs=107.4
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
..|+...+.+.+++++.+.++.+.+ .|+.|.|+.|. +++...++++++++++ ++++.+...
T Consensus 135 ~vp~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDan 198 (371)
T 2ps2_A 135 RLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISG----------------EPVTDAKRITAALANQQPDEFFIVDAN 198 (371)
T ss_dssp CEEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECCS----------------CHHHHHHHHHHHTTTCCTTCEEEEECT
T ss_pred ceEEEEEeCCCCHHHHHHHHHHHHHhChheEEeecCC----------------CHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 3455555656688988887776544 58999998774 3566778889999887 578888776
Q ss_pred cccccccHHHHHHHH-HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 280 IYQDVNKTVEYARML-ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 280 ~~~d~~~~~e~a~~l-e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
-+++.++..++++.+ +++|+ .|- + + .. +++..+++++.+++||++.+.+.+.++++++++...+|.
T Consensus 199 ~~~~~~~a~~~~~~l~~~~~i-~iE-------~-P-~~---~~~~~~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~ 265 (371)
T 2ps2_A 199 GKLSVETALRLLRLLPHGLDF-ALE-------A-P-CA---TWRECISLRRKTDIPIIYDELATNEMSIVKILADDAAEG 265 (371)
T ss_dssp TBCCHHHHHHHHHHSCTTCCC-EEE-------C-C-BS---SHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHHTCCSE
T ss_pred CCcCHHHHHHHHHHHHhhcCC-cCc-------C-C-cC---CHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCE
Confidence 677878888999999 99988 652 2 1 22 899999999999999999999999999999998888999
Q ss_pred EEeccccccC
Q psy7343 359 VMTAEGNLYN 368 (487)
Q Consensus 359 VmiGRa~l~~ 368 (487)
|++--..++.
T Consensus 266 v~ik~~~~GG 275 (371)
T 2ps2_A 266 IDLKISKAGG 275 (371)
T ss_dssp EEEEHHHHTS
T ss_pred EEechhhcCC
Confidence 9986544433
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-05 Score=78.61 Aligned_cols=138 Identities=15% Similarity=0.194 Sum_probs=94.0
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.||..|=+.-|+.+..++. . -.+|+|-|.... + +.+.+.++++..++ .++.+.+-+
T Consensus 112 v~lPvl~kdfiid~~qv~~A~-~--~GAD~VlLi~a~--------------l-~~~~l~~l~~~a~~-lGl~~lvev--- 169 (272)
T 3qja_A 112 VSIPVLRKDFVVQPYQIHEAR-A--HGADMLLLIVAA--------------L-EQSVLVSMLDRTES-LGMTALVEV--- 169 (272)
T ss_dssp CSSCEEEESCCCSHHHHHHHH-H--TTCSEEEEEGGG--------------S-CHHHHHHHHHHHHH-TTCEEEEEE---
T ss_pred CCCCEEECccccCHHHHHHHH-H--cCCCEEEEeccc--------------C-CHHHHHHHHHHHHH-CCCcEEEEc---
Confidence 467998875555655444332 1 224555443221 1 24556677766654 577776654
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
.+..+ ++...+.|+|.|-+.+|.... ...+.+.+.++.+.+ ++||++.|||.|++|+.++. ..|+|+|
T Consensus 170 ---~t~ee-~~~A~~~Gad~IGv~~r~l~~-----~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~-~~Gadgv 239 (272)
T 3qja_A 170 ---HTEQE-ADRALKAGAKVIGVNARDLMT-----LDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYA-GAGADAV 239 (272)
T ss_dssp ---SSHHH-HHHHHHHTCSEEEEESBCTTT-----CCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHH-HTTCSEE
T ss_pred ---CCHHH-HHHHHHCCCCEEEECCCcccc-----cccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHH-HcCCCEE
Confidence 24444 444557799999997764322 134677888888887 79999999999999999999 7899999
Q ss_pred EeccccccCccc
Q psy7343 360 MTAEGNLYNPAL 371 (487)
Q Consensus 360 miGRa~l~~P~l 371 (487)
.||++++..++.
T Consensus 240 lVGsal~~a~dp 251 (272)
T 3qja_A 240 LVGEGLVTSGDP 251 (272)
T ss_dssp EECHHHHTCSCH
T ss_pred EEcHHHhCCCCH
Confidence 999999877643
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.9e-06 Score=85.81 Aligned_cols=137 Identities=10% Similarity=0.112 Sum_probs=109.0
Q ss_pred CCeeeee-c-cCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEe
Q psy7343 204 RPLIIQF-C-GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKI 278 (487)
Q Consensus 204 ~Pv~Vqi-~-g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKi 278 (487)
.|+...+ . ..+++++.+.++.+ ++.++.|.|++|+ +++.-.++++++++++ ++++.+..
T Consensus 139 v~~y~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~----------------~~~~d~~~v~avR~a~g~d~~l~vDa 202 (389)
T 3ozy_A 139 VRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR----------------APRKDAANLRAMRQRVGADVEILVDA 202 (389)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEEC
Confidence 5666666 4 57888888877655 4458888888776 3566677888888887 57888887
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH-hhCCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR-KALTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~-~~~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
.-+++.++..++++.+++.|++.|. | + + .+.+++..++++ +.+++||++++.+.+.+++.++++..++|
T Consensus 203 n~~~~~~~A~~~~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~~iPIa~dE~i~~~~~~~~~i~~~~~d 272 (389)
T 3ozy_A 203 NQSLGRHDALAMLRILDEAGCYWFE-------E-P-L-SIDDIEGHRILRAQGTPVRIATGENLYTRNAFNDYIRNDAID 272 (389)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCSEEE-------S-C-S-CTTCHHHHHHHHTTCCSSEEEECTTCCHHHHHHHHHHTTCCS
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEE-------C-C-C-CcccHHHHHHHHhcCCCCCEEeCCCCCCHHHHHHHHHcCCCC
Confidence 7778888899999999999999884 2 1 2 235789999999 99999999999999999999999878899
Q ss_pred EEEeccccc
Q psy7343 358 GVMTAEGNL 366 (487)
Q Consensus 358 ~VmiGRa~l 366 (487)
.|++--+.+
T Consensus 273 ~v~ik~~~~ 281 (389)
T 3ozy_A 273 VLQADASRA 281 (389)
T ss_dssp EECCCTTTS
T ss_pred EEEeCcccc
Confidence 998754433
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.3e-06 Score=89.60 Aligned_cols=106 Identities=20% Similarity=0.199 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc-------cCCCCCCCCCCCHHHHHHH
Q psy7343 256 WPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT-------VDQRGMNTGLASWEHITAV 327 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt-------~~~~g~~~g~~~~~~i~~i 327 (487)
.+...+.++.+++.+ ++|++++ ++.+ .+.++.+.+.|+|+|.+ |.. +...+ . +.+..+.+.++
T Consensus 258 ~~~~~~~i~~l~~~~p~~pvi~G-----~v~t-~~~a~~~~~~Gad~I~v-g~g~g~~~~tr~~~~-~-~~p~~~~l~~~ 328 (491)
T 1zfj_A 258 SAGVLRKIAEIRAHFPNRTLIAG-----NIAT-AEGARALYDAGVDVVKV-GIGPGSICTTRVVAG-V-GVPQVTAIYDA 328 (491)
T ss_dssp CHHHHHHHHHHHHHCSSSCEEEE-----EECS-HHHHHHHHHTTCSEEEE-CSSCCTTBCHHHHTC-C-CCCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCCcEeCC-----CccC-HHHHHHHHHcCCCEEEE-CccCCcceEEeeecC-C-CCCcHHHHHHH
Confidence 344556677788887 8999854 3333 46667888999999998 531 11111 1 34566777776
Q ss_pred Hh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 328 RK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 328 ~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.+ ..++|||+.|||++.+|+.+++ ..|||+|++||+++..++.
T Consensus 329 ~~~~~~~~ipvia~GGi~~~~di~kal-~~GA~~v~vG~~~~~~~e~ 374 (491)
T 1zfj_A 329 AAVAREYGKTIIADGGIKYSGDIVKAL-AAGGNAVMLGSMFAGTDEA 374 (491)
T ss_dssp HHHHHHTTCEEEEESCCCSHHHHHHHH-HTTCSEEEESTTTTTBSSC
T ss_pred HHHHhhcCCCEEeeCCCCCHHHHHHHH-HcCCcceeeCHHhhCCCcC
Confidence 65 4689999999999999999999 6899999999999976553
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=98.30 E-value=7.7e-06 Score=83.48 Aligned_cols=136 Identities=14% Similarity=0.093 Sum_probs=106.3
Q ss_pred CCeeeeeccCCHHHHHHHHHhhC-CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeec
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRI 280 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~-~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~ 280 (487)
.|+...+.+.+++++.+.++.+. +.++.|.+++|++ +++...+.++++++++ ++++.+...-
T Consensus 130 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~d~~~v~avr~a~g~~~~l~vDan~ 194 (366)
T 1tkk_A 130 LETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDANQ 194 (366)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 45555555568888877766554 4589999988761 4566677888888877 5788887766
Q ss_pred ccccccHHHHHHHHHH--cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 281 YQDVNKTVEYARMLER--AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~--~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
+++.++..++++.+++ +|++.|- | + . .+.+++..+++++.+++||++.+.+.+.+++.++++...+|.
T Consensus 195 ~~~~~~a~~~~~~l~~~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~ 264 (366)
T 1tkk_A 195 GWRPKEAVTAIRKMEDAGLGIELVE-------Q-P-V-HKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADL 264 (366)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEEE-------C-C-S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCCSE
T ss_pred CCCHHHHHHHHHHHhhcCCCceEEE-------C-C-C-CcccHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHhCCCCE
Confidence 7788888999999999 8887663 2 1 2 345899999999999999999999999999999998788999
Q ss_pred EEeccc
Q psy7343 359 VMTAEG 364 (487)
Q Consensus 359 VmiGRa 364 (487)
|++--.
T Consensus 265 v~ik~~ 270 (366)
T 1tkk_A 265 INIKLM 270 (366)
T ss_dssp EEECHH
T ss_pred EEeehh
Confidence 998543
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-06 Score=84.61 Aligned_cols=205 Identities=13% Similarity=0.133 Sum_probs=105.7
Q ss_pred hhcCCCceEEecCCCCCCHHH------HHHHHHcCCCeEEccceec--cccccCcHHHHHHhhhCCCCCceeeeeccccC
Q psy7343 74 TQLGSPRFILAPMVDASELPW------RLLSRRYGSHLCYTPMVSA--HQFIADKKLRQEILMSTPEDRPLIIQRTIFPR 145 (487)
Q Consensus 74 ~~~~~~~~~LAPMag~td~pF------R~l~~~~Gadl~~TEMi~a--~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~ 145 (487)
.++ +.|+++|||.|.|+.++ |.+|+++|+.+..+||..+ +.-+..+.+..+ ...| +.|++..+...
T Consensus 56 ~~l-~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~~~s~~~vr--~~ap-~~~~~anlg~~-- 129 (368)
T 3vkj_A 56 KEI-SVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVR--KVAP-TIPIIANLGMP-- 129 (368)
T ss_dssp EEE-SSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGGSHHHHHHH--HHCS-SSCEEEEEEGG--
T ss_pred Eec-cCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHHHhhHHHHH--HhCc-CcceecCcCee--
Confidence 344 66899999999999995 9999999999999999765 443333332222 2233 33443332110
Q ss_pred CCCCccccccccCCCchHHHHHHHHhCCccceeccccchhhh-c--Chh---HHHHHHh--cCCCCCCeeeeecc--CCH
Q psy7343 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI-A--DKK---LRQEILM--STPEDRPLIIQFCG--NDS 215 (487)
Q Consensus 146 ~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll-~--~~~---~~~~~l~--~~~~~~Pv~Vqi~g--~d~ 215 (487)
. +++ +......+......+++...--........ . +.+ ...+.++ ....+.||++|..| .++
T Consensus 130 ----q--l~~--~~~~~~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~vG~g~s~ 201 (368)
T 3vkj_A 130 ----Q--LVK--GYGLKEFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISM 201 (368)
T ss_dssp ----G--GGT--TCCHHHHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECSSSCCCH
T ss_pred ----e--cCC--CCCHHHHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeCCCCCCH
Confidence 0 000 011111222222223322110011111111 0 110 1222332 23347899999654 333
Q ss_pred HHHHHHHHhhCCc-CcEEEee--cCCCcc-e--eec-c------CccccccCCh-----HHHHHHHHHHhhhc-cCcEEE
Q psy7343 216 KNLTEAAKLAEPH-CDGIDIN--IGCPQM-V--AKR-G------HYGAYLQDDW-----PLLTNLVSSLRQAV-QVPVSC 276 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN--~GcP~~-i--~~~-g------r~G~~l~~d~-----~~i~eiv~~v~~~~-~iPV~v 276 (487)
+.|+.++++ +|+|++. .|-+.. + .+. + ..+ ....+| ..+.+ +++.+ ++||++
T Consensus 202 ----~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~-~~~~~~g~pt~~~l~~----v~~~~~~ipvia 272 (368)
T 3vkj_A 202 ----ETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESA-KNFLDWGVPTAASIME----VRYSVPDSFLVG 272 (368)
T ss_dssp ----HHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHH-HHTTTCSCBHHHHHHH----HHHHSTTCEEEE
T ss_pred ----HHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhc-cccccccccHHHHHHH----HHHHcCCCcEEE
Confidence 345555555 7888873 221000 0 010 0 000 111233 23333 44455 499999
Q ss_pred EeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 277 KIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 277 KiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
.+ ++.+..++++.+. .|+|+|++ ||
T Consensus 273 ~G----GI~~~~d~~kal~-lGA~~v~i-g~ 297 (368)
T 3vkj_A 273 SG----GIRSGLDAAKAIA-LGADIAGM-AL 297 (368)
T ss_dssp ES----SCCSHHHHHHHHH-HTCSEEEE-CH
T ss_pred EC----CCCCHHHHHHHHH-cCCCEEEE-cH
Confidence 97 7888999999888 69999999 76
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=9.6e-06 Score=84.74 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCC-eeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceee---ccCccc-cccCChHHHHHHHHHHhhhc--cCc
Q psy7343 203 DRP-LIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAK---RGHYGA-YLQDDWPLLTNLVSSLRQAV--QVP 273 (487)
Q Consensus 203 ~~P-v~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~---~gr~G~-~l~~d~~~i~eiv~~v~~~~--~iP 273 (487)
+.| |+|||.. .+.+++.++|+.++++ .|+|.++.+....... ....|+ .....++...+++..+++.+ ++|
T Consensus 296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iP 375 (443)
T 1tv5_A 296 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP 375 (443)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCc
Confidence 578 9999994 5667888899988877 8888876543211100 001111 11112334567788888888 899
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
|++.+ ++.+..++.+.+. +|||.|++ ||.
T Consensus 376 VIg~G----GI~s~~DA~e~l~-aGAd~Vqi-gra 404 (443)
T 1tv5_A 376 IIASG----GIFSGLDALEKIE-AGASVCQL-YSC 404 (443)
T ss_dssp EEEES----SCCSHHHHHHHHH-TTEEEEEE-SHH
T ss_pred EEEEC----CCCCHHHHHHHHH-cCCCEEEE-cHH
Confidence 99998 7888999888886 79999999 774
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-06 Score=85.38 Aligned_cols=132 Identities=10% Similarity=0.158 Sum_probs=104.7
Q ss_pred cCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHH
Q psy7343 212 GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~ 288 (487)
+.+++++.+.++.+.+ .|+.|.|+.|.. .++...++++++++++ ++++.+...-+++.++..
T Consensus 147 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~---------------~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~ 211 (391)
T 2qgy_A 147 KKDTNDYLRQIEKFYGKKYGGIKIYPMLD---------------SLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTK 211 (391)
T ss_dssp CCCHHHHHHHHHHHHHTTCSCEEECCCCS---------------SHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------hHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHH
Confidence 4688888887776544 489999886630 1466778888898877 688888877778888899
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++++.++++|++.|- + + + ...+++..+++++.+++||++.+.+.+.++++++++...+|.|++-...++.
T Consensus 212 ~~~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 281 (391)
T 2qgy_A 212 SFLKEVSSFNPYWIE-------E-P-V-DGENISLLTEIKNTFNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGG 281 (391)
T ss_dssp HHHHHHGGGCCSEEE-------C-S-S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSC
T ss_pred HHHHHHHhcCCCeEe-------C-C-C-ChhhHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCC
Confidence 999999999999874 1 1 2 2357999999999999999999999999999999987789999875443333
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.5e-06 Score=81.22 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHhhCCcCcEEEeecCCCcceee-ccCcc-----ccc--cCChHHHHHHHHHHhhhccCcEEEEeecc-cc
Q psy7343 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAK-RGHYG-----AYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIY-QD 283 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~-~gr~G-----~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~-~d 283 (487)
.+.+...+.++.+++..|.||| |-|..-.. +|..= .++ --+.+.+.++++++++.+++||++-+-.+ ..
T Consensus 27 P~~~~~~~~~~~l~~~aD~IEl--G~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~ 104 (271)
T 1ujp_A 27 PSREGFLQAVEEVLPYADLLEI--GLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVL 104 (271)
T ss_dssp SCHHHHHHHHHHHGGGCSSEEE--ECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEE--CCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHH
Confidence 3556777777766555999999 44432110 11000 000 02456677889999988899999842111 01
Q ss_pred cccHHHHHHHHHHcCCcEEEEEc-------------------------c-ccC-----------------CCCCCCCC--
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHG-------------------------R-TVD-----------------QRGMNTGL-- 318 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~Vhg-------------------------R-t~~-----------------~~g~~~g~-- 318 (487)
.....++++.+.++|+|++++-. - +.. ...+++|.
T Consensus 105 ~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~vs~~G~TG~~~ 184 (271)
T 1ujp_A 105 AWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRE 184 (271)
T ss_dssp HHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC--------
T ss_pred HhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEEecCcccCCCC
Confidence 11346777777778888776511 0 000 00012232
Q ss_pred ----CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 319 ----ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 319 ----~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
...+.++++++..++||++.|||+|++++.++ .|||+|++|+++...
T Consensus 185 ~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~---~~ADgVIVGSAi~~~ 235 (271)
T 1ujp_A 185 RLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA---AVADGVVVGSALVRA 235 (271)
T ss_dssp ----CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH---TTSSEEEECHHHHHH
T ss_pred CCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh---cCCCEEEEChHHhcc
Confidence 12578999999999999999999999999996 689999999987654
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=6.6e-07 Score=85.76 Aligned_cols=85 Identities=24% Similarity=0.375 Sum_probs=71.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
++..+.++.+++.|+|+|.++...... ......++.++++++.+++||+++|+|.+++++++++ +.|||+|++|+.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~---~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~-~~Gad~V~i~~~ 108 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAP---EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLF-RAGADKVSVNTA 108 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCT---TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH-HHTCSEEEESHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccc---cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEEChH
Confidence 478899999999999999997654322 1122357889999999999999999999999999988 689999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
++.+|+++.
T Consensus 109 ~~~~~~~~~ 117 (253)
T 1h5y_A 109 AVRNPQLVA 117 (253)
T ss_dssp HHHCTHHHH
T ss_pred HhhCcHHHH
Confidence 999998764
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=9.1e-07 Score=84.91 Aligned_cols=83 Identities=24% Similarity=0.263 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+..++++.+++.|+|.|.++....... ..... +.++++++.+++|++++|+|.++++++.++ +.|||+|++|+++
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~---~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l-~~Gad~V~lg~~~ 106 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFG---RGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAAL-ATGCARVNVGTAA 106 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTT---SCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHH-HTTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCccccc---CCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHH-HcCCCEEEECchH
Confidence 678899999999999999976543322 12334 889999999999999999999999999999 6899999999999
Q ss_pred ccCccccc
Q psy7343 366 LYNPALFT 373 (487)
Q Consensus 366 l~~P~lf~ 373 (487)
+.+|+++.
T Consensus 107 l~~p~~~~ 114 (244)
T 2y88_A 107 LENPQWCA 114 (244)
T ss_dssp HHCHHHHH
T ss_pred hhChHHHH
Confidence 99997764
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-05 Score=84.40 Aligned_cols=128 Identities=23% Similarity=0.263 Sum_probs=88.2
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
.++.+..+..+++...|.|-|... || +-+.+.+.++.+++.. +++|++- ++ .+.+.++
T Consensus 279 ~~d~~eR~~aLv~AGvD~iviD~a-------hG--------hs~~v~~~i~~ik~~~p~~~viaG-----NV-aT~e~a~ 337 (556)
T 4af0_A 279 RPGDKDRLKLLAEAGLDVVVLDSS-------QG--------NSVYQIEFIKWIKQTYPKIDVIAG-----NV-VTREQAA 337 (556)
T ss_dssp SHHHHHHHHHHHHTTCCEEEECCS-------CC--------CSHHHHHHHHHHHHHCTTSEEEEE-----EE-CSHHHHH
T ss_pred CccHHHHHHHHHhcCCcEEEEecc-------cc--------ccHHHHHHHHHHHhhCCcceEEec-----cc-cCHHHHH
Confidence 455666666666655676655432 22 2455667788888776 6777763 23 4457778
Q ss_pred HHHHcCCcEEEEEccc-------cCCCCCCCCCCCHHHHHHHH---hhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 293 MLERAGCQLLAVHGRT-------VDQRGMNTGLASWEHITAVR---KALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 293 ~le~~G~d~I~VhgRt-------~~~~g~~~g~~~~~~i~~i~---~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.|.++|+|+|.| |-+ +...| -|.+....+.++. +..++|||+.|||++.-|+.+.+ ..|||.||+|
T Consensus 338 ~Li~aGAD~vkV-GiGpGSiCtTr~v~G--vG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAl-aaGAd~VMlG 413 (556)
T 4af0_A 338 QLIAAGADGLRI-GMGSGSICITQEVMA--VGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKAL-ALGASAVMMG 413 (556)
T ss_dssp HHHHHTCSEEEE-CSSCSTTBCCTTTCC--SCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHH-HTTCSEEEES
T ss_pred HHHHcCCCEEee-cCCCCcccccccccC--CCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHh-hcCCCEEEEc
Confidence 888999999999 643 22221 2344555555554 44689999999999999999999 7999999999
Q ss_pred cccc
Q psy7343 363 EGNL 366 (487)
Q Consensus 363 Ra~l 366 (487)
.-|-
T Consensus 414 sllA 417 (556)
T 4af0_A 414 GLLA 417 (556)
T ss_dssp TTTT
T ss_pred hhhc
Confidence 7544
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.24 E-value=6e-06 Score=85.22 Aligned_cols=102 Identities=22% Similarity=0.398 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC-CCHHHHHHHHhhCCC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL-ASWEHITAVRKALTI 333 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~-~~~~~i~~i~~~~~i 333 (487)
|++.+.++++.+++. +++++++++. ....+.++.+++.|+|.+.+|++...+. +.++ ..|+.+.++++.+++
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~----~~~~e~a~~~~~agad~i~i~~~~~~~~--~~~~~~~~~~i~~l~~~~~~ 212 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSP----QNVREIAPIVIKAGADLLVIQGTLISAE--HVNTGGEALNLKEFIGSLDV 212 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECT----TTHHHHHHHHHHTTCSEEEEECSSCCSS--CCCC-----CHHHHHHHCSS
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCC----ccHHHHHHHHHHCCCCEEEEeCCccccc--cCCCcccHHHHHHHHHhcCC
Confidence 788888999988876 8999998842 3567788888899999999997753222 2222 267778999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
||++ |||.|.++++.++ +.|||+|++|+|.
T Consensus 213 pvi~-ggi~t~e~a~~~~-~~Gad~i~vg~Gg 242 (393)
T 2qr6_A 213 PVIA-GGVNDYTTALHMM-RTGAVGIIVGGGE 242 (393)
T ss_dssp CEEE-ECCCSHHHHHHHH-TTTCSEEEESCCS
T ss_pred CEEE-CCcCCHHHHHHHH-HcCCCEEEECCCc
Confidence 9999 8999999999998 7999999999854
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-06 Score=88.13 Aligned_cols=127 Identities=14% Similarity=0.077 Sum_probs=80.9
Q ss_pred ceeccccchhhhcChhHHHHHHhc--CCCCCCeeeeec-cCCHHHHHHHHHhhCCc--CcEEEe-ec---------CCCc
Q psy7343 176 CYTPMVSAHQFIADKKLRQEILMS--TPEDRPLIIQFC-GNDSKNLTEAAKLAEPH--CDGIDI-NI---------GCPQ 240 (487)
Q Consensus 176 ~~t~~v~~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~--~d~Idi-N~---------GcP~ 240 (487)
||... .+..|.++++.+.++++. ...+.||+|||+ +.|.+++.++++.++++ .|+|-+ |- -...
T Consensus 165 CPn~~-gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~ 243 (354)
T 4ef8_A 165 CPNVP-GKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETES 243 (354)
T ss_dssp SCCST-TSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTE
T ss_pred CCCCC-CchhhccCHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCc
Confidence 66443 256777888888888752 334689999999 56777888888877664 566643 10 0000
Q ss_pred ceee-ccCccc-cccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 241 MVAK-RGHYGA-YLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 241 ~i~~-~gr~G~-~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
.... ...+|+ ....-...-.+++..+++.. ++||++++ ++.+..++.+.+. +|||+|+| ||..
T Consensus 244 ~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ipII~~G----GI~s~~da~~~l~-aGAd~V~v-gra~ 309 (354)
T 4ef8_A 244 VVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCG----GVYTGEDAFLHVL-AGASMVQV-GTAL 309 (354)
T ss_dssp ESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEES----CCCSHHHHHHHHH-HTEEEEEE-CHHH
T ss_pred cccccccccCCCCCCCCchHHHHHHHHHHHhCCCCCEEEEC----CcCCHHHHHHHHH-cCCCEEEE-hHHH
Confidence 0000 011121 11112234455666677666 69999998 8889999998885 89999999 8854
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.8e-06 Score=80.40 Aligned_cols=116 Identities=15% Similarity=0.217 Sum_probs=80.4
Q ss_pred cccccCChHHHHHHHHHHhhh-ccCcEEEEee----c---cc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQA-VQVPVSCKIR----I---YQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~-~~iPV~vKiR----~---~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g 317 (487)
++....+|+++.++.+..-.. +-+-+.++.+ + +| ...+..++++.+++.|+..|.++.-.+... ..|
T Consensus 104 ~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt--~~G 181 (243)
T 4gj1_A 104 GSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGT--MQG 181 (243)
T ss_dssp CTTTTTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTTCCEEEEEETTC-------C
T ss_pred ccccccCCchHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcCCcEEEeeeeccccc--ccC
Confidence 344457899999987765322 1111222111 1 12 123678999999999999999965444332 334
Q ss_pred CCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 318 LASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 318 ~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
.+.+.++++.+.+ ++|||++||+.+.+|++++ ..+++||.+|++++.+-
T Consensus 182 -~d~~l~~~l~~~~~~ipviasGGv~~~~Dl~~l--~~~~~gvivg~Al~~g~ 231 (243)
T 4gj1_A 182 -VNVRLYKLIHEIFPNICIQASGGVASLKDLENL--KGICSGVIVGKALLDGV 231 (243)
T ss_dssp -CCHHHHHHHHHHCTTSEEEEESCCCSHHHHHHT--TTTCSEEEECHHHHTTS
T ss_pred -CCHHHHHHHHHhcCCCCEEEEcCCCCHHHHHHH--HccCchhehHHHHHCCC
Confidence 6899999999887 7999999999999999886 35799999999987653
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-05 Score=80.02 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=106.9
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+.++++|||.|+|+..|+..+.+.|+ +++++++++.+.+...-+...+. .+.|+.+|+... ++.
T Consensus 12 ~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~-----~~~p~gvnl~~~----~~~------ 76 (332)
T 2z6i_A 12 DYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSL-----TDKPFGVNIMLL----SPF------ 76 (332)
T ss_dssp SSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHH-----CCSCEEEEECTT----STT------
T ss_pred CCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEecCC----CCC------
Confidence 56799999999999999999999997 89999998877663222222221 257899996321 110
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN 235 (487)
. ...-.++.+.|++.+-.... .+....+.++. .+.|+++++. +.+. ++.+++. .|+|.+.
T Consensus 77 --~--~~~~~~a~~~g~d~V~~~~g-------~p~~~i~~l~~--~g~~v~~~v~--~~~~----a~~~~~~GaD~i~v~ 137 (332)
T 2z6i_A 77 --V--EDIVDLVIEEGVKVVTTGAG-------NPSKYMERFHE--AGIIVIPVVP--SVAL----AKRMEKIGADAVIAE 137 (332)
T ss_dssp --H--HHHHHHHHHTTCSEEEECSS-------CGGGTHHHHHH--TTCEEEEEES--SHHH----HHHHHHTTCSCEEEE
T ss_pred --H--HHHHHHHHHCCCCEEEECCC-------ChHHHHHHHHH--cCCeEEEEeC--CHHH----HHHHHHcCCCEEEEE
Confidence 0 11234556678766443221 12222222322 2578888873 3322 3333333 7777775
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
|... .|..| . ..++++ +..+++.+++||++.+ .+.+..++.+.+. .|+|+|.+ ||.
T Consensus 138 -g~~~----GG~~g-~-~~~~~l----l~~i~~~~~iPViaaG----GI~~~~~~~~al~-~GAdgV~v-Gs~ 193 (332)
T 2z6i_A 138 -GMEA----GGHIG-K-LTTMTL----VRQVATAISIPVIAAG----GIADGEGAAAGFM-LGAEAVQV-GTR 193 (332)
T ss_dssp -CTTS----SEECC-S-SCHHHH----HHHHHHHCSSCEEEES----SCCSHHHHHHHHH-TTCSEEEE-CHH
T ss_pred -CCCC----CCCCC-C-ccHHHH----HHHHHHhcCCCEEEEC----CCCCHHHHHHHHH-cCCCEEEe-cHH
Confidence 2210 01111 1 123444 4456666789999998 5556677766665 79999999 764
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=98.23 E-value=4.6e-07 Score=92.69 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=86.2
Q ss_pred ceeccccchhhhcChhHHHHHHhcC---------CCCCCeeeeec-cCCHHHHHHHHHhhCCc-CcEEEeecCC---Ccc
Q psy7343 176 CYTPMVSAHQFIADKKLRQEILMST---------PEDRPLIIQFC-GNDSKNLTEAAKLAEPH-CDGIDINIGC---PQM 241 (487)
Q Consensus 176 ~~t~~v~~~~Ll~~~~~~~~~l~~~---------~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~-~d~IdiN~Gc---P~~ 241 (487)
||... +.+++++++...++++.. ..+.||+||++ +.+.+++.++|+.++++ +|+|-++-.. +..
T Consensus 186 CPn~~--G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~ 263 (367)
T 3zwt_A 186 SPNTA--GLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAG 263 (367)
T ss_dssp CTTST--TGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTT
T ss_pred CCCCC--CccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccc
Confidence 55433 556788888777776421 14689999999 45677888999998887 8888765322 110
Q ss_pred ee-e-ccCccc-cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 242 VA-K-RGHYGA-YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 242 i~-~-~gr~G~-~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
.. . ....|+ .....+....+++..+++.+ ++||++.+ ++.+..++.+.++ +|+|+|+| ||..
T Consensus 264 ~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~G----GI~s~~da~~~l~-~GAd~V~v-gra~ 330 (367)
T 3zwt_A 264 LQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVG----GVSSGQDALEKIR-AGASLVQL-YTAL 330 (367)
T ss_dssp CCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEES----SCCSHHHHHHHHH-HTCSEEEE-SHHH
T ss_pred cccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEEC----CCCCHHHHHHHHH-cCCCEEEE-CHHH
Confidence 00 0 001111 12334556667888888888 89999998 7888999888886 89999999 8853
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=84.39 Aligned_cols=83 Identities=25% Similarity=0.273 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+..++++.+++.|+|.|.++....... ....+ +.++++++.+++|++++|+|.++++++.++ +.|||+|.+|+.+
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~---~~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l-~~Gad~V~lg~~~ 107 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFG---TGDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAAL-ATGCTRVNLGTAA 107 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHT---SCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHH-HTTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhc---CCChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHH-HcCCCEEEECchH
Confidence 688899999999999999976543221 12345 889999999999999999999999999999 6899999999999
Q ss_pred ccCccccc
Q psy7343 366 LYNPALFT 373 (487)
Q Consensus 366 l~~P~lf~ 373 (487)
+.||+++.
T Consensus 108 l~~p~~~~ 115 (244)
T 1vzw_A 108 LETPEWVA 115 (244)
T ss_dssp HHCHHHHH
T ss_pred hhCHHHHH
Confidence 99997764
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.22 E-value=7.9e-06 Score=76.57 Aligned_cols=105 Identities=20% Similarity=0.231 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcE
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPV 335 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPV 335 (487)
+.+.++++.+++. ++++.+-+ .+..+..+.++.+.+.|+|.|.++.....+. .+...++.++++++.+ ++||
T Consensus 90 ~~~~~~~~~~~~~-g~~~~v~~---~~~~t~~~~~~~~~~~g~d~i~v~~g~~g~~---~~~~~~~~i~~l~~~~~~~~i 162 (211)
T 3f4w_A 90 LTIQSCIRAAKEA-GKQVVVDM---ICVDDLPARVRLLEEAGADMLAVHTGTDQQA---AGRKPIDDLITMLKVRRKARI 162 (211)
T ss_dssp HHHHHHHHHHHHH-TCEEEEEC---TTCSSHHHHHHHHHHHTCCEEEEECCHHHHH---TTCCSHHHHHHHHHHCSSCEE
T ss_pred hHHHHHHHHHHHc-CCeEEEEe---cCCCCHHHHHHHHHHcCCCEEEEcCCCcccc---cCCCCHHHHHHHHHHcCCCcE
Confidence 4456666666654 66666532 1344667888889999999998863211111 1223678999999986 8999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
++.|||+ .+++.+++ +.|||+|.+||+++..++
T Consensus 163 ~~~gGI~-~~~~~~~~-~~Gad~vvvGsai~~~~d 195 (211)
T 3f4w_A 163 AVAGGIS-SQTVKDYA-LLGPDVVIVGSAITHAAD 195 (211)
T ss_dssp EEESSCC-TTTHHHHH-TTCCSEEEECHHHHTCSS
T ss_pred EEECCCC-HHHHHHHH-HcCCCEEEECHHHcCCCC
Confidence 9999996 99999999 789999999999887654
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-05 Score=77.33 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=94.5
Q ss_pred CCCeeeeecc-CCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFCG-NDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g-~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
+.++-.+..| .+.++...++++..+. -+.| ++-+.+.. ..+..|+....+-.+.+.+. ++.|.-..
T Consensus 63 ~~~~lpntaG~~taeeAv~~a~lare~~gt~~i--------KlEvi~d~-~~l~pD~~~tv~aa~~L~k~-Gf~Vlpy~- 131 (268)
T 2htm_A 63 GVRLLPNTAGARTAEEAVRLARLGRLLTGERWV--------KLEVIPDP-TYLLPDPLETLKAAERLIEE-DFLVLPYM- 131 (268)
T ss_dssp TSEEEEBCTTCCSHHHHHHHHHHHHHHHCCSEE--------BCCCCSCT-TTTCCCHHHHHHHHHHHHHT-TCEECCEE-
T ss_pred hhhccCcccCCCCHHHHHHHHHhhhHhcCccee--------eeeeccCc-cccCcCHHHHHHHHHHHHHC-CCEEeecc-
Confidence 5556666665 6788888888776554 1221 12222221 12455665555544444332 44333111
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh-hCC-CcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK-ALT-IPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~-~~~-iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
. ....+++.+++.|++.||--|.-- |.-.|..+.+.++.+++ ..+ +|||+.|||.|++|+..++ +.|||
T Consensus 132 ----~-~D~~~ak~l~~~G~~aVmPlg~pI---GsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~Am-eLGAd 202 (268)
T 2htm_A 132 ----G-PDLVLAKRLAALGTATVMPLAAPI---GSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVM-ELGLD 202 (268)
T ss_dssp ----C-SCHHHHHHHHHHTCSCBEEBSSST---TTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHH-HTTCC
T ss_pred ----C-CCHHHHHHHHhcCCCEEEecCccC---cCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHH-HcCCC
Confidence 1 223888999999999998744311 11224456788999998 678 9999999999999999999 79999
Q ss_pred EEEecccccc
Q psy7343 358 GVMTAEGNLY 367 (487)
Q Consensus 358 ~VmiGRa~l~ 367 (487)
+|.+|+++..
T Consensus 203 gVlVgSAI~~ 212 (268)
T 2htm_A 203 AVLVNTAIAE 212 (268)
T ss_dssp EEEESHHHHT
T ss_pred EEEEChHHhC
Confidence 9999999764
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=7.8e-06 Score=84.77 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=104.0
Q ss_pred CHHHHHHHHHhhC-CcCcEEEeec------CCC--cceeeccCcccccc-CChHHHHHHHHHHhhhc--cCcEEEEeecc
Q psy7343 214 DSKNLTEAAKLAE-PHCDGIDINI------GCP--QMVAKRGHYGAYLQ-DDWPLLTNLVSSLRQAV--QVPVSCKIRIY 281 (487)
Q Consensus 214 d~~~~~~aa~~~~-~~~d~IdiN~------GcP--~~i~~~gr~G~~l~-~d~~~i~eiv~~v~~~~--~iPV~vKiR~~ 281 (487)
+++++.+.++.+. +.|+.|.|+. |+. .....+ .+|+... ++.+...++++++++++ ++++.+...-+
T Consensus 150 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~-~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~ 228 (410)
T 2gl5_A 150 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNR-NYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSL 228 (410)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCG-GGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccc-cccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 7888887776554 4599999996 541 111122 3455442 35677788999999887 57788776556
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.++..++++.++++|++.|-- + . ...+++..+++++.+++||++.+.+.+.++++++++...+|.|++
T Consensus 229 ~~~~~ai~~~~~l~~~~i~~iE~--------P-~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 298 (410)
T 2gl5_A 229 LGTNSAIQFAKAIEKYRIFLYEE--------P-I-HPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQP 298 (410)
T ss_dssp SCHHHHHHHHHHHGGGCEEEEEC--------S-S-CSSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECC
T ss_pred CCHHHHHHHHHHHHhcCCCeEEC--------C-C-ChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 77788899999999999887642 1 1 235799999999999999999999999999999997777898875
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.9e-06 Score=82.51 Aligned_cols=86 Identities=16% Similarity=0.143 Sum_probs=70.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.++++.+++.|++.|.++....... .. ..+++.++++++.+++||+++|+|.+.+++.+++ +.|||+|++|+.
T Consensus 30 ~~~~~~a~~~~~~Ga~~i~v~d~~~~~~--~~-g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~-~~Gad~v~lg~~ 105 (266)
T 2w6r_A 30 ILLRDWVVEVEKRGAGEILLTSIDRDGT--KS-GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADKALAASV 105 (266)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEETTTSSC--SS-CCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHH-HHTCSEEECCCC
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccC--CC-cccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCcHhhhhHH
Confidence 3689999999999999999976544322 22 2578999999999999999999999999999999 689999999999
Q ss_pred cc-c--CcccccC
Q psy7343 365 NL-Y--NPALFTG 374 (487)
Q Consensus 365 ~l-~--~P~lf~~ 374 (487)
++ . +|..+.+
T Consensus 106 ~~~~~~~~~~~~~ 118 (266)
T 2w6r_A 106 FHFREIDMRELKE 118 (266)
T ss_dssp C------CHHHHH
T ss_pred HHhCCCCHHHHHH
Confidence 99 5 8877653
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-05 Score=75.00 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=87.2
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee-
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR- 279 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR- 279 (487)
.+.|++..+++.|.+++.+.++.+.+. .+.|++...+|.. . +.++.+++..++++++..-
T Consensus 5 ~~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~--------------~----~~i~~i~~~~~~~l~vg~g~ 66 (212)
T 2v82_A 5 TKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQW--------------E----QSIPAIVDAYGDKALIGAGT 66 (212)
T ss_dssp SSSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTSTTH--------------H----HHHHHHHHHHTTTSEEEEEC
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhH--------------H----HHHHHHHHhCCCCeEEEecc
Confidence 357899999999999999988877665 7888877655321 0 1112222223333333110
Q ss_pred -------------------cc------------------cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHH
Q psy7343 280 -------------------IY------------------QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322 (487)
Q Consensus 280 -------------------~~------------------~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~ 322 (487)
++ ....+..++ ....+.|+|.|.++.. ....++
T Consensus 67 ~~~~~~i~~a~~~Gad~V~~~~~~~~~~~~~~~~g~~~~~g~~t~~e~-~~a~~~G~d~v~v~~t---------~~~g~~ 136 (212)
T 2v82_A 67 VLKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEA-FTALEAGAQALKIFPS---------SAFGPQ 136 (212)
T ss_dssp CCSHHHHHHHHHTTCCEEECSSCCHHHHHHHHHTTCEEECEECSHHHH-HHHHHTTCSEEEETTH---------HHHCHH
T ss_pred ccCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCCEEeecCCHHHH-HHHHHCCCCEEEEecC---------CCCCHH
Confidence 00 001122222 2334556666655211 112468
Q ss_pred HHHHHHhhCC--CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 323 HITAVRKALT--IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 323 ~i~~i~~~~~--iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.++++++.++ +||++.|||+ .+++.+++ +.|+++|.+|++++..
T Consensus 137 ~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~-~~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 137 YIKALKAVLPSDIAVFAVGGVT-PENLAQWI-DAGCAGAGLGSDLYRA 182 (212)
T ss_dssp HHHHHHTTSCTTCEEEEESSCC-TTTHHHHH-HHTCSEEEECTTTCCT
T ss_pred HHHHHHHhccCCCeEEEeCCCC-HHHHHHHH-HcCCCEEEEChHHhCC
Confidence 8889888885 9999999997 89999999 6899999999998875
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-05 Score=82.40 Aligned_cols=133 Identities=18% Similarity=0.201 Sum_probs=102.6
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeec
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRI 280 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~ 280 (487)
.|+...+...+++.+.+.++.+.+ .|+.|.++.|. +++...++++++++++ ++++.+...-
T Consensus 135 vp~~~~~g~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~~e~v~avR~a~g~d~~l~vDan~ 198 (397)
T 2qde_A 135 IPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGG----------------PLKADIAMVAEVRRAVGDDVDLFIDING 198 (397)
T ss_dssp EEBCEECCCSCHHHHHHHHHHHHHHTCSCEEEECCS----------------CHHHHHHHHHHHHHHHCTTSCEEEECTT
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhhhhheeecccC----------------CHHHHHHHHHHHHHhhCCCCEEEEECCC
Confidence 344433333578888877765544 48888888663 4566677888888876 5788877655
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+++.++..++++.++++|++.|- + + . ...+++..+++++.+++||++.+.+.+.++++++++...+|.|+
T Consensus 199 ~~~~~~a~~~~~~l~~~~i~~iE-------q-P-~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ 268 (397)
T 2qde_A 199 AWTYDQALTTIRALEKYNLSKIE-------Q-P-L-PAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLM 268 (397)
T ss_dssp CCCHHHHHHHHHHHGGGCCSCEE-------C-C-S-CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCEEE-------C-C-C-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEE
Confidence 67778888999999999999774 1 1 1 23578999999999999999999999999999999777899998
Q ss_pred ec
Q psy7343 361 TA 362 (487)
Q Consensus 361 iG 362 (487)
+-
T Consensus 269 ik 270 (397)
T 2qde_A 269 IK 270 (397)
T ss_dssp EC
T ss_pred Ee
Confidence 73
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=98.14 E-value=6.4e-06 Score=77.38 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=72.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+...|+..|.+++.+..+. ..|.. ++.++++++..++|||+.||+.+++++.+++ +.|+|+|++|++
T Consensus 130 ~~~~~~i~~~~~~~~~~vli~~~~~~g~--~~g~~-~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~-~~G~~~~~vg~a 205 (237)
T 3cwo_X 130 ILLRDWVVEVEKRGAGEILLTSIDRDGT--KSGYD-TEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADAALAASV 205 (237)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEETTTTTC--CSCCC-HHHHHHHGGGCCSCEEEESCCCSHHHHHHHH-HHTCSEEEESHH
T ss_pred cCHHHHHHHHhhcCCCeEEEEecCCCCc--ccccc-HHHHHHHHHhcCCCEEecCCCCCHHHHHHHH-HcCcHHHhhhHH
Confidence 3678888999999999898888633322 34443 8899999999999999999999999999999 589999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
++.+|+.+.
T Consensus 206 ~~~~~~~~~ 214 (237)
T 3cwo_X 206 FHFREIDVR 214 (237)
T ss_dssp HHTTSSCHH
T ss_pred HHcCCCCHH
Confidence 999998875
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=82.67 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=99.8
Q ss_pred CHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
+++++.+.++.+.+ .|+.|.|+.|. .+++...++++++++++ ++++.+...-+++.++..++
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~ 226 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQ---------------PDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRM 226 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCC---------------SCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHH
Confidence 78888887776544 48999888663 14667778888898886 57888876666777888999
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++.++++|++.|- + + . ...+++..+++++.+++||++.+.+.+.++++++++...+|.|++-
T Consensus 227 ~~~l~~~~i~~iE-------~-P-~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 288 (393)
T 2og9_A 227 CRIFEPFNLVWIE-------E-P-L-DAYDHEGHAALALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPD 288 (393)
T ss_dssp HHHHGGGCCSCEE-------C-C-S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHhhCCCEEE-------C-C-C-CcccHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeC
Confidence 9999999999874 2 1 2 2357899999999999999999999999999999977779988763
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.3e-06 Score=84.95 Aligned_cols=140 Identities=6% Similarity=0.078 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHHhh-CCcCcEEEeecCCCcce--eeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeeccccccc
Q psy7343 212 GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMV--AKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNK 286 (487)
Q Consensus 212 g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i--~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~ 286 (487)
..+++++.+.++.+ ++.|+.|.|+.||.... ...-.||+....+.+...++++++++++ ++++.+...-+++.++
T Consensus 135 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~ 214 (392)
T 2poz_A 135 ADTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDE 214 (392)
T ss_dssp CCSHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHH
Confidence 35788887776655 44599999998863210 0001123333345677788999999887 5778877655677788
Q ss_pred HHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 287 ~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
..++++.++++|++.|-- + . ...+++..+++++.+++||++.+.+.|.++++++++...+|.|++
T Consensus 215 a~~~~~~l~~~~i~~iE~--------P-~-~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 279 (392)
T 2poz_A 215 TIRFCRKIGELDICFVEE--------P-C-DPFDNGALKVISEQIPLPIAVGERVYTRFGFRKIFELQACGIIQP 279 (392)
T ss_dssp HHHHHHHHGGGCEEEEEC--------C-S-CTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHTTTCCSEECC
T ss_pred HHHHHHHHHhcCCCEEEC--------C-C-CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 899999999999887631 1 1 235799999999999999999999999999999997667898876
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.1e-05 Score=81.69 Aligned_cols=141 Identities=8% Similarity=0.037 Sum_probs=108.4
Q ss_pred CCCeeee-eccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEe
Q psy7343 203 DRPLIIQ-FCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vq-i~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKi 278 (487)
..|+-.. +...+++.+.+.++.+ +..++.|.|++|+... . |+ ++++...+.++++|+++ ++++.+..
T Consensus 167 ~v~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~---d---g~---~~~~~die~v~avReavG~d~~L~vDa 237 (412)
T 3stp_A 167 RIPVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPK---D---GM---PGMRENLKRVEAVREVIGYDNDLMLEC 237 (412)
T ss_dssp SEEEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGG---G---HH---HHHHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcc---c---cc---chHHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 4455554 3346889998877765 4459999999988311 1 11 34566778888899887 57888877
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
.-+++..+..++++.+++.|++.|-- + . .+.+++..+++++.+++||++.+.+.+..++.++++...+|.
T Consensus 238 N~~~~~~~Ai~~~~~Le~~~i~~iEe--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~li~~~a~D~ 307 (412)
T 3stp_A 238 YMGWNLDYAKRMLPKLAPYEPRWLEE--------P-V-IADDVAGYAELNAMNIVPISGGEHEFSVIGCAELINRKAVSV 307 (412)
T ss_dssp TTCSCHHHHHHHHHHHGGGCCSEEEC--------C-S-CTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEC--------C-C-CcccHHHHHHHHhCCCCCEEeCCCCCCHHHHHHHHHcCCCCE
Confidence 66788888999999999999998842 1 2 234789999999999999999999999999999997777899
Q ss_pred EEec
Q psy7343 359 VMTA 362 (487)
Q Consensus 359 VmiG 362 (487)
|++-
T Consensus 308 v~ik 311 (412)
T 3stp_A 308 LQYD 311 (412)
T ss_dssp ECCC
T ss_pred EecC
Confidence 8754
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.10 E-value=6e-05 Score=73.73 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=97.7
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.||..|=+..|+.+..++. ...+|+|=|...+ + +.+.+.++++..++ .+..+.+-+
T Consensus 119 v~lPVl~Kdfi~d~~qi~ea~---~~GAD~VlLi~a~--------------L-~~~~l~~l~~~a~~-lGl~~lvev--- 176 (272)
T 3tsm_A 119 CSLPALRKDFLFDPYQVYEAR---SWGADCILIIMAS--------------V-DDDLAKELEDTAFA-LGMDALIEV--- 176 (272)
T ss_dssp SSSCEEEESCCCSTHHHHHHH---HTTCSEEEEETTT--------------S-CHHHHHHHHHHHHH-TTCEEEEEE---
T ss_pred cCCCEEECCccCCHHHHHHHH---HcCCCEEEEcccc--------------c-CHHHHHHHHHHHHH-cCCeEEEEe---
Confidence 468998886656666544332 2225555544332 1 35667777776654 477666655
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
.+..+ ++.+.+.|++.|-+.+|.-.. -..+++...++.+.+ ++|+|+-|||.|++|+.++. +.|+|+|
T Consensus 177 ---h~~eE-l~~A~~~ga~iIGinnr~l~t-----~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~-~~Ga~gv 246 (272)
T 3tsm_A 177 ---HDEAE-MERALKLSSRLLGVNNRNLRS-----FEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLE-KSGIGTF 246 (272)
T ss_dssp ---CSHHH-HHHHTTSCCSEEEEECBCTTT-----CCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHH-TTTCCEE
T ss_pred ---CCHHH-HHHHHhcCCCEEEECCCCCcc-----CCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHH-HcCCCEE
Confidence 23444 456668999999887774322 235788888888877 69999999999999999998 7999999
Q ss_pred EeccccccCccc
Q psy7343 360 MTAEGNLYNPAL 371 (487)
Q Consensus 360 miGRa~l~~P~l 371 (487)
.||.+++..++.
T Consensus 247 LVG~almr~~d~ 258 (272)
T 3tsm_A 247 LIGESLMRQHDV 258 (272)
T ss_dssp EECHHHHTSSCH
T ss_pred EEcHHHcCCcCH
Confidence 999999988765
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=98.09 E-value=5.2e-05 Score=72.18 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=88.7
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.|+.|-+..+|++.+.+.+..+ ..|+|.+|.+. ..+.+.+.++.+++. ++.+.+-+
T Consensus 64 ~~~~~v~lmv~d~~~~i~~~~~a--gad~v~vH~~~----------------~~~~~~~~~~~i~~~-g~~igv~~---- 120 (228)
T 1h1y_A 64 KAYLDCHLMVTNPSDYVEPLAKA--GASGFTFHIEV----------------SRDNWQELIQSIKAK-GMRPGVSL---- 120 (228)
T ss_dssp CSEEEEEEESSCGGGGHHHHHHH--TCSEEEEEGGG----------------CTTTHHHHHHHHHHT-TCEEEEEE----
T ss_pred CCcEEEEEEecCHHHHHHHHHHc--CCCEEEECCCC----------------cccHHHHHHHHHHHc-CCCEEEEE----
Confidence 46788888888887665544332 24555555332 111113445555543 66666554
Q ss_pred ccccHHHHHHHHHHc--CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 283 DVNKTVEYARMLERA--GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 283 d~~~~~e~a~~le~~--G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+..+..+..+.+.+. ++|.|.+........+..-....++.++++++.. ++||++.|||+. +++.+++ ..|+|++
T Consensus 121 ~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~~~~-~aGaD~v 198 (228)
T 1h1y_A 121 RPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAA-SAGANCI 198 (228)
T ss_dssp CTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHH-HHTCCEE
T ss_pred eCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHHHHH-HcCCCEE
Confidence 222333444555555 8999988443221111000112347788888888 899999999997 8888888 6799999
Q ss_pred EeccccccCcc
Q psy7343 360 MTAEGNLYNPA 370 (487)
Q Consensus 360 miGRa~l~~P~ 370 (487)
.+|++++..++
T Consensus 199 vvGsai~~~~d 209 (228)
T 1h1y_A 199 VAGSSIFGAAE 209 (228)
T ss_dssp EESHHHHTSSC
T ss_pred EECHHHHCCCC
Confidence 99999887654
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-05 Score=76.07 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=88.7
Q ss_pred HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---cccccHHHHHHHH
Q psy7343 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDVNKTVEYARML 294 (487)
Q Consensus 218 ~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~d~~~~~e~a~~l 294 (487)
..++...++...|.||+.+.. |.....|++.+.+-++++++.++- ..+|+-+. -+.++...+++..
T Consensus 98 v~Ea~~Ai~~GAdEIDmViNi----------g~lk~g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia 166 (239)
T 3ngj_A 98 AYETKVAVEQGAEEVDMVINI----------GMVKAKKYDDVEKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKRC 166 (239)
T ss_dssp HHHHHHHHHTTCSEEEEECCH----------HHHHTTCHHHHHHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeeh----------HHhccccHHHHHHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHHH
Confidence 345555666668999875332 222234788888888888887751 24444321 1334567777888
Q ss_pred HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++|+|+|-.+ - |...+.+..+.++.+++.+ +++|.++|||+|.+|+.+++ +.||+.+....+
T Consensus 167 ~~aGADfVKTS-T-----Gf~~ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i-~aGA~riGtS~~ 231 (239)
T 3ngj_A 167 VAAGAEYVKTS-T-----GFGTHGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMI-NNGASRIGASAG 231 (239)
T ss_dssp HHHTCSEEECC-C-----SSSSCCCCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHH-HTTEEEEEESCH
T ss_pred HHHCcCEEECC-C-----CCCCCCCCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHH-HhcccceecccH
Confidence 89999999762 1 1123557787787777765 68999999999999999999 799996665543
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.6e-05 Score=79.22 Aligned_cols=123 Identities=10% Similarity=0.027 Sum_probs=98.4
Q ss_pred CHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
+++++.+.++.+ ++.|+.|.|+.|+ .+++...++++++++++ ++++.+...-+++.++..++
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~ 209 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGH---------------RDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTK 209 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCC---------------SSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCC---------------CCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHH
Confidence 788888777655 4458999998876 14566678888999987 57788776666787888999
Q ss_pred HHHHHH--cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 291 ARMLER--AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 291 a~~le~--~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++.+++ .|++.|- | + + ...+++..+++++.+ ++||++.+.+ +.++++++++...+|.|++.
T Consensus 210 ~~~l~~~g~~i~~iE-------q-P-~-~~~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 210 LVAIREAGHDLLWVE-------D-P-I-LRHDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp HHHHHHTTCCCSEEE-------S-C-B-CTTCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred HHHHHhcCCCceEEe-------C-C-C-CCcCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 999999 7777652 2 1 2 234799999999999 9999999999 99999999977789999997
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.7e-05 Score=74.92 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeecc-Ccc-----ccc--cCChHHHHHHHHHHhhhc-cCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRG-HYG-----AYL--QDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~g-r~G-----~~l--~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~ 282 (487)
.+.+...+.++.+++. .|.|||+ .|..-...+ ..= ..+ --+.+.+.++++++++.+ ++|+.+-+-...
T Consensus 28 p~~~~~~~~~~~l~~~G~D~IElG--~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~ 105 (262)
T 2ekc_A 28 PDYETSLKAFKEVLKNGTDILEIG--FPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNP 105 (262)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEE--CCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHH
T ss_pred CChHHHHHHHHHHHHcCCCEEEEC--CCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcH
Confidence 4567888888888776 9999994 443210000 000 000 024566778899999888 899988321110
Q ss_pred -ccccHHHHHHHHHHcCCcEEEEEcc--------------------------ccC-----------------CCCCCCCC
Q psy7343 283 -DVNKTVEYARMLERAGCQLLAVHGR--------------------------TVD-----------------QRGMNTGL 318 (487)
Q Consensus 283 -d~~~~~e~a~~le~~G~d~I~VhgR--------------------------t~~-----------------~~g~~~g~ 318 (487)
.......+++.+.++|+|+++++.- +.. ...+.+|.
T Consensus 106 v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs~~g~TG~ 185 (262)
T 2ekc_A 106 IFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTGTTGA 185 (262)
T ss_dssp HHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEESSCC----
T ss_pred HHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEecCCccCC
Confidence 0112367778888888888876221 000 00011121
Q ss_pred C-------CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 319 A-------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 319 ~-------~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
. ..+.++++++..++||+..|||.|++++.+ + ..|||+|++|+++...
T Consensus 186 ~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~-~~gADgvIVGSai~~~ 240 (262)
T 2ekc_A 186 REKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-I-GSFADGVVVGSALVKL 240 (262)
T ss_dssp -----CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-H-HTTSSEEEECHHHHHH
T ss_pred CCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-H-HcCCCEEEECHHHHhh
Confidence 1 136888999989999999999999999999 5 4689999999998765
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=78.25 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 288 VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 288 ~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
..++...+..|...|-+-+.. ...+.+.++++++.+ ++||++.|||+|.+++++++ ..|||+|.+|+++
T Consensus 189 ~aYa~~gad~G~~lV~LD~~~--------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll-~aGAD~VVVGSAa 259 (286)
T 3vk5_A 189 DRYLHVARAFGFHMVYLYSRN--------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYL-DSGADYVGFAGAL 259 (286)
T ss_dssp HHHHHHHHHTTCSEEEEECSS--------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHH-HTTCSEEEESGGG
T ss_pred HHHHHHHHHcCCCEEEEcCCC--------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH-HcCCCEEEECchh
Confidence 567777788899988885321 235679999999999 89999999999999999999 6899999999999
Q ss_pred ccC--cccccC
Q psy7343 366 LYN--PALFTG 374 (487)
Q Consensus 366 l~~--P~lf~~ 374 (487)
+.| |.++++
T Consensus 260 v~d~~Pelv~e 270 (286)
T 3vk5_A 260 EQPDWRSALAE 270 (286)
T ss_dssp SSTTHHHHHHH
T ss_pred hcCCCHHHHHH
Confidence 999 777653
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.3e-05 Score=82.77 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=101.5
Q ss_pred CHHHHHHHHHhh-CCcCcEEEeec------CCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeeccccc
Q psy7343 214 DSKNLTEAAKLA-EPHCDGIDINI------GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDV 284 (487)
Q Consensus 214 d~~~~~~aa~~~-~~~~d~IdiN~------GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~ 284 (487)
+++++.+.++.+ ++.|+.|.|+. |++.. ...+|....++.+...++++++++++ ++++.+...-+++.
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~---s~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~ 222 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREG---VFLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDL 222 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTT---CCCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccccc---CcccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH
Confidence 788888777655 44599999996 54211 11112111234566778899999877 57788776656777
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++..++++.++++|++.|-- + + ...+++..+++++.+++||++.+.+.|.++++++++...+|.|++-
T Consensus 223 ~~ai~~~~~l~~~~i~~iE~--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 290 (403)
T 2ox4_A 223 VSAIQFAKAIEEFNIFFYEE--------I-N-TPLNPRLLKEAKKKIDIPLASGERIYSRWGFLPFLEDRSIDVIQPD 290 (403)
T ss_dssp HHHHHHHHHHGGGCEEEEEC--------C-S-CTTSTHHHHHHHHTCCSCEEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHHHHHHHhhCCCEEeC--------C-C-ChhhHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 88899999999999887631 1 2 2357899999999999999999999999999999977779988763
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=7.8e-06 Score=102.23 Aligned_cols=193 Identities=14% Similarity=0.186 Sum_probs=117.4
Q ss_pred CCCCccccccccCCC-chHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHh----cCCCCCCeeeeeccCCHHHH-
Q psy7343 146 LGSPRFILAPMVDAS-ELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILM----STPEDRPLIIQFCGNDSKNL- 218 (487)
Q Consensus 146 ~g~~~~~lApma~~t-d~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~d~~~~- 218 (487)
+|..|++++||++.+ +..+-....|.|. +.. .+.+ +.+++...+.++ ....+.|+.|++.-.++...
T Consensus 425 lg~~PIi~a~M~~~~s~~~LaaAVs~AGglG~l-----~~~g-~~~~~~l~~~i~~~r~~~~~~~p~~vNl~~~~p~~~~ 498 (3089)
T 3zen_D 425 TGRSPILLAGMTPTTVDAKIVAAAANAGHWAEL-----AGGG-QVTEQIFNDRIAELETLLEPGRAIQFNTLFLDPYLWK 498 (3089)
T ss_dssp HSSCSEEECCCHHHHTSHHHHHHHHHTTCEEEE-----CSTT-CCSHHHHHHHHHHHHHHSCTTCCCEEEEECSCHHHHH
T ss_pred cCCCCEEeCCCcCCcCCHHHHHHHHhCCCceee-----cCCC-CCCHHHHHHHHHHHHHhcCCCCceeechhhcChhhhh
Confidence 457799999999654 6666655566653 332 1111 123333333332 23346789999875555331
Q ss_pred -----HHHHHhhCCc---CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE-EeecccccccHHH
Q psy7343 219 -----TEAAKLAEPH---CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC-KIRIYQDVNKTVE 289 (487)
Q Consensus 219 -----~~aa~~~~~~---~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v-KiR~~~d~~~~~e 289 (487)
.+.++.+.+. .|+|-+..|.| +.+...++++.+++. ++.++. +. ...+
T Consensus 499 ~~~g~~~~~~~~~~~g~~vdgv~~~aG~P---------------~~ee~~~~i~~l~~~-Gi~~i~~~~-------~t~~ 555 (3089)
T 3zen_D 499 LQVGGKRLVQRARQSGAPIDGLVVSAGIP---------------DLEEAVDIIDELNEV-GISHVVFKP-------GTVE 555 (3089)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEESSCC---------------CHHHHHHHHTSTTHH-HHCSEEECC-------CSHH
T ss_pred hccCHHHHHHHHHHcCCCceEEEEeCCCC---------------chhHhHHHHHHHHHc-CCEEEEEeC-------CCHH
Confidence 2334433333 34444444443 234455566655543 565555 53 3345
Q ss_pred HHHHHHHcCCc------EEEEEccccCCCCCCCCCCC-HHHH----HHHHhhCCCcEEEcCCCCCHHHHHHHHH------
Q psy7343 290 YARMLERAGCQ------LLAVHGRTVDQRGMNTGLAS-WEHI----TAVRKALTIPVIANGNIQCLADVEACLA------ 352 (487)
Q Consensus 290 ~a~~le~~G~d------~I~VhgRt~~~~g~~~g~~~-~~~i----~~i~~~~~iPVi~nGgI~s~~da~~~l~------ 352 (487)
.++.+++.|+| .|.+.|-+.. +..+..+ .+.+ .++++..++||++.|||.+++++..++.
T Consensus 556 ~a~~~~~i~~d~~~~~y~vv~~G~eaG---GH~g~~~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~ 632 (3089)
T 3zen_D 556 QIRSVIRIAAEVPTKPVIVHIEGGRAG---GHHSWEDLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEV 632 (3089)
T ss_dssp HHHHHHHHHTTSTTSCEEEEECCSSSS---EECCSCCHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGT
T ss_pred HHHHHHHhhhhcCCCcEEEEEeCCCcC---CCCCcccHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccc
Confidence 55666777777 7777654332 2333333 3555 7788888999999999999999999881
Q ss_pred ----hcCCcEEEeccccccCcc
Q psy7343 353 ----QTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 353 ----~~Gad~VmiGRa~l~~P~ 370 (487)
..|||||++|+.++.-+.
T Consensus 633 ~~~p~lGAdGV~vGTrfl~t~E 654 (3089)
T 3zen_D 633 HGYPLMPIDGILVGTAAMATLE 654 (3089)
T ss_dssp TTCCCCCCSEEECSSTTTTCTT
T ss_pred cCccCCCCCEEEecHHHHhCcc
Confidence 469999999999998764
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.2e-06 Score=80.13 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.+.++.+++.|+|.+++-.=.... .....+.+.++++.+.+.+|+.+.|||+|.+++++++ +.|||.|.+|+.
T Consensus 31 ~dP~~~a~~~~~~gad~lhvvDld~a~---~~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l-~~GadkVii~t~ 106 (243)
T 4gj1_A 31 YNPLKKFKEYEKAGAKELHLVDLTGAK---DPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALL-DCGVKRVVIGSM 106 (243)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEHHHHH---CGGGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHH-HTTCSEEEECTT
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCccc---ccchhHHHHHHHHHHhcCCCeEeccccccHHHHHHHH-HcCCCEEEEccc
Confidence 478999999999999999884321111 1234578999999999999999999999999999999 799999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||.++.+
T Consensus 107 a~~~p~li~e 116 (243)
T 4gj1_A 107 AIKDATLCLE 116 (243)
T ss_dssp TTTCHHHHHH
T ss_pred cccCCchHHH
Confidence 9999998753
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=98.05 E-value=2.4e-05 Score=76.33 Aligned_cols=144 Identities=18% Similarity=0.243 Sum_probs=88.0
Q ss_pred CCeeeeecc-CCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEe
Q psy7343 204 RPLIIQFCG-NDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKI 278 (487)
Q Consensus 204 ~Pv~Vqi~g-~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKi 278 (487)
.++..+..+ .+.++....++.+.++ .+.|.++. .|. .. ..++...++++.+++.+ ++.++.-.
T Consensus 66 ~~~~pn~~~~~~~~~~~~f~~~a~~agg~~~i~l~i-~~d-----~~------~~~~e~~~~~~~a~~~~~~g~~vi~~~ 133 (264)
T 1xm3_A 66 YTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEV-IGC-----SR------SLLPDPVETLKASEQLLEEGFIVLPYT 133 (264)
T ss_dssp SEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECC-BCC-----TT------TCCBCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEcCCccccCCHHHHHHHHHHHHHcCCCCeEEEee-cCC-----Cc------ccccchHHHHHHHHHHHCCCeEEEEEc
Confidence 445556654 5677665666666543 33344332 110 00 01223345555555443 44444221
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
..+ .+.++.+++.|+|+|+..+..... ..+...++.++++++..++||++.|||.+++|+.+++ +.|||+
T Consensus 134 -----~~~-~~~a~~~~~~gad~v~~~~~~~Gt---~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~-~~GAdg 203 (264)
T 1xm3_A 134 -----SDD-VVLARKLEELGVHAIMPGASPIGS---GQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAM-ELGADG 203 (264)
T ss_dssp -----CSC-HHHHHHHHHHTCSCBEECSSSTTC---CCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHH-HTTCSE
T ss_pred -----CCC-HHHHHHHHHhCCCEEEECCcccCC---CCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHH-HcCCCE
Confidence 112 345677888999999442221111 1123347889999998899999999999999999999 789999
Q ss_pred EEeccccccCc
Q psy7343 359 VMTAEGNLYNP 369 (487)
Q Consensus 359 VmiGRa~l~~P 369 (487)
|.+|++++..+
T Consensus 204 ViVGSAi~~a~ 214 (264)
T 1xm3_A 204 VLLNTAVSGAD 214 (264)
T ss_dssp EEESHHHHTSS
T ss_pred EEEcHHHhCCC
Confidence 99999987654
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.6e-05 Score=80.52 Aligned_cols=123 Identities=12% Similarity=0.158 Sum_probs=98.6
Q ss_pred CHHHHHHHHHhhC-CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~-~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
+++++.+.++.+. +.|+.|.++.|. .+++...++++++++++ ++++.+...-+++.++..++
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~ 239 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQ---------------PNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRM 239 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCC---------------SCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence 7888887776554 458888887664 24666778888888886 57888877667777888999
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.++++|++.|-- + . ...+++..+++++.+++||++.+.+.+.++++++++...+|.|++
T Consensus 240 ~~~l~~~~i~~iEq--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 300 (398)
T 2pp0_A 240 GRKMEQFNLIWIEE--------P-L-DAYDIEGHAQLAAALDTPIATGEMLTSFREHEQLILGNASDFVQP 300 (398)
T ss_dssp HHHHGGGTCSCEEC--------C-S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred HHHHHHcCCceeeC--------C-C-ChhhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence 99999999997631 1 2 235799999999999999999999999999999997777998876
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.9e-05 Score=81.11 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHH
Q psy7343 213 NDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 213 ~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e 289 (487)
.+++++.+.++.+ ++.|..|.++.|+|.... .|. .....+.+...+++++||+++ ++++.+...-+++..+..+
T Consensus 145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~-~G~--~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~ 221 (433)
T 3rcy_A 145 TSADMAAESAADCVARGYTAVKFDPAGPYTLR-GGH--MPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIR 221 (433)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTT-CCB--CCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccc-cCC--CcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHH
Confidence 5788888776654 556999999999975321 111 111224666778888999887 5777776655677788899
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+++.++++|++.|-- + . .+.+++.++++++.+++||++.+.+.+..+++++++...+|.|++-
T Consensus 222 ~~~~Le~~~i~~iEe--------P-~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d 284 (433)
T 3rcy_A 222 LGQAIEPYSPLWYEE--------P-V-PPDNVGAMAQVARAVRIPVATGERLTTKAEFAPVLREGAAAILQPA 284 (433)
T ss_dssp HHHHHGGGCCSEEEC--------C-S-CTTCHHHHHHHHHHSSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred HHHHhhhcCCCEEEC--------C-C-ChhhHHHHHHHHhccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999998842 1 1 2347899999999999999999999999999999977778988754
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=4e-05 Score=78.97 Aligned_cols=124 Identities=10% Similarity=0.055 Sum_probs=98.1
Q ss_pred CHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
+++++.+.++.+ ++.|+.|.|+.|++ +++...++++++++++ ++++.+...-+++.++..++
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~ 229 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGA---------------PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAY 229 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSS---------------CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC---------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence 788887776654 44589999998761 3566677888888876 57787776556777888999
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc----CCcEEEec
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT----GVAGVMTA 362 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~----Gad~VmiG 362 (487)
++.++++|++.|- + + + ...+++..+++++.+++||++.+.+.+.++++++++.. .+|.|++-
T Consensus 230 ~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik 295 (392)
T 1tzz_A 230 AKMLRDYPLFWYE-------E-V-G-DPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFD 295 (392)
T ss_dssp HHHHTTSCCSEEE-------C-C-S-CTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred HHHHHHcCCCeec-------C-C-C-ChhhHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEEC
Confidence 9999999999774 2 1 2 23579999999999999999999999999999999766 69988763
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.01 E-value=4.7e-05 Score=74.26 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHhhh---ccCcEEEEeeccc-------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHH
Q psy7343 256 WPLLTNLVSSLRQA---VQVPVSCKIRIYQ-------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325 (487)
Q Consensus 256 ~~~i~eiv~~v~~~---~~iPV~vKiR~~~-------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~ 325 (487)
++...+.++++++. .++|++++..+.+ +.+.....++...+.|+|+|-+ +- . ...+.++
T Consensus 120 ~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt-~~--------~--~~~e~~~ 188 (263)
T 1w8s_A 120 EWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKI-KY--------T--GDPKTFS 188 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEE-EC--------C--SSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEE-cC--------C--CCHHHHH
Confidence 34444444444433 3899999865421 2233455568888999999988 31 1 2568899
Q ss_pred HHHhhCCC-cEEEcCCCC--CHHHHHHHHH---hcCCcEEEeccccccCccc
Q psy7343 326 AVRKALTI-PVIANGNIQ--CLADVEACLA---QTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 326 ~i~~~~~i-PVi~nGgI~--s~~da~~~l~---~~Gad~VmiGRa~l~~P~l 371 (487)
++++.+++ ||++.|||+ |.+++.++++ +.||+|+.+||+++..|+.
T Consensus 189 ~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~dp 240 (263)
T 1w8s_A 189 WAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDA 240 (263)
T ss_dssp HHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTH
T ss_pred HHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcCH
Confidence 99988887 999999999 9999888774 4899999999999888653
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-05 Score=80.20 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=106.8
Q ss_pred CCCeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
..|+...+.+.+++++.+.++.+ ++.+..|.+ .|+|..-.. ....+++.-.+.++++|+++ ++++.+...
T Consensus 114 ~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~~------~~~~~~~~d~e~v~avR~avG~d~~L~vDaN 186 (405)
T 3rr1_A 114 KMRTYSWVGGDRPADVIAGMKALQAGGFDHFKL-NGCEEMGII------DTSRAVDAAVARVAEIRSAFGNTVEFGLDFH 186 (405)
T ss_dssp CEEEEEECCCSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSCB------CSHHHHHHHHHHHHHHHHTTGGGSEEEEECC
T ss_pred ceeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEE-ecCCccccc------ccchhHHHHHHHHHHHHHHhCCCceEEEECC
Confidence 45666666667888888776654 455888888 777531000 01124556677888899887 577887765
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+++..+..++++.+++.|++.|-= + . .+.+++..+++++.+++||++.+.+.+..++.++++...+|.|
T Consensus 187 ~~~~~~~A~~~~~~L~~~~i~~iEe--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v 256 (405)
T 3rr1_A 187 GRVSAPMAKVLIKELEPYRPLFIEE--------P-V-LAEQAETYARLAAHTHLPIAAGERMFSRFDFKRVLEAGGVSIL 256 (405)
T ss_dssp SCBCHHHHHHHHHHHGGGCCSCEEC--------S-S-CCSSTHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHCCCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEC--------C-C-CcccHHHHHHHHhcCCCCEEecCCcCCHHHHHHHHHHhCCCeE
Confidence 6778888899999999999998842 1 1 2347899999999999999999999999999999977789988
Q ss_pred Eec
Q psy7343 360 MTA 362 (487)
Q Consensus 360 miG 362 (487)
++-
T Consensus 257 ~~d 259 (405)
T 3rr1_A 257 QPD 259 (405)
T ss_dssp CCB
T ss_pred EEC
Confidence 754
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.2e-05 Score=79.41 Aligned_cols=124 Identities=12% Similarity=0.172 Sum_probs=97.6
Q ss_pred CCH---HHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeeccccccc
Q psy7343 213 NDS---KNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNK 286 (487)
Q Consensus 213 ~d~---~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~ 286 (487)
.++ +.+.+.++.+ ++.|+.|.++.|+ .+++...++++++++++ ++++.+...-+++.++
T Consensus 135 ~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~ 199 (382)
T 2gdq_A 135 DSPQWISRSVSNVEAQLKKGFEQIKVKIGG---------------TSFKEDVRHINALQHTAGSSITMILDANQSYDAAA 199 (382)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHH
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCCC---------------CCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHH
Confidence 467 8887776655 4458999998775 14566778888888877 5778877655677778
Q ss_pred HHHHHHHHHHc-CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 287 TVEYARMLERA-GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 287 ~~e~a~~le~~-G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
..++++.++++ |++.|- | + . ...+++..+++++.+++||++.+.+.+.++++++++...+|.|++
T Consensus 200 a~~~~~~l~~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 265 (382)
T 2gdq_A 200 AFKWERYFSEWTNIGWLE-------E-P-L-PFDQPQDYAMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQP 265 (382)
T ss_dssp HHTTHHHHTTCSCEEEEE-------C-C-S-CSSCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred HHHHHHHHhhccCCeEEE-------C-C-C-CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 88899999998 888763 2 1 2 235789999999999999999999999999999997777898875
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=97.99 E-value=7.2e-05 Score=73.28 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=84.6
Q ss_pred HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc---ccccHHHHHHHH
Q psy7343 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ---DVNKTVEYARML 294 (487)
Q Consensus 218 ~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~---d~~~~~e~a~~l 294 (487)
..++...++...|.||+.+.. |.....+++.+.+-++++++.++-+ .+|+-+.. +.++....++..
T Consensus 129 v~Ea~~Ai~~GAdEIDmVINi----------g~lk~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt~eei~~A~~ia 197 (288)
T 3oa3_A 129 VSEAKRAMQNGASELDMVMNY----------PWLSEKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLTADEIIAGCVLS 197 (288)
T ss_dssp HHHHHHHHHTTCSEEEEECCH----------HHHHTTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeeh----------hhhcCCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCCHHHHHHHHHHH
Confidence 345555666668999943221 2222347898888888898887655 35554421 234566678888
Q ss_pred HHcCCcEEEEEccccCCCCCCCCCCCHH---HHHHHHh--hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 295 ERAGCQLLAVHGRTVDQRGMNTGLASWE---HITAVRK--ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~~g~~~g~~~~~---~i~~i~~--~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.++|+|+|--+ |. ...+.+..+ .++++.+ ..+++|.++|||+|.+|+.+++ +.||+.+....
T Consensus 198 ~eaGADfVKTS--TG----f~~~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi-~aGA~RiGtS~ 264 (288)
T 3oa3_A 198 SLAGADYVKTS--TG----FNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMV-RAGAERLGASA 264 (288)
T ss_dssp HHTTCSEEECC--CS----SSSCCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHH-HTTCSEEEESC
T ss_pred HHcCCCEEEcC--CC----CCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-HcCCceeehhh
Confidence 89999999662 21 112344444 4444443 2479999999999999999999 69999655443
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.1e-05 Score=74.38 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCC-CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQR-GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+..+ ++.+.+.|+|+|.+..-...+. .+. .+..|+.++++++..++||++.||| |.+++.+++ +.|+|+|.+|++
T Consensus 119 t~~~-~~~a~~~gaD~i~~~~~f~~~~~~g~-~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~-~~Ga~gv~vgs~ 194 (221)
T 1yad_A 119 SLEE-AVQAEKEDADYVLFGHVFETDCKKGL-EGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVK-QAGADGIAVMSG 194 (221)
T ss_dssp SHHH-HHHHHHTTCSEEEEECCC-----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHH-HTTCSEEEESHH
T ss_pred CHHH-HHHHHhCCCCEEEECCccccCCCCCC-CCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHH-HcCCCEEEEhHH
Confidence 3344 5666789999999943211111 111 1346899999998889999999999 999999999 589999999999
Q ss_pred cccCcc
Q psy7343 365 NLYNPA 370 (487)
Q Consensus 365 ~l~~P~ 370 (487)
++.+++
T Consensus 195 i~~~~d 200 (221)
T 1yad_A 195 IFSSAE 200 (221)
T ss_dssp HHTSSS
T ss_pred hhCCCC
Confidence 987654
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.8e-05 Score=82.82 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=72.0
Q ss_pred HHHHHHHHhhhc-c-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC----CC-CCCCCCCHHHHHHHHhhC
Q psy7343 259 LTNLVSSLRQAV-Q-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ----RG-MNTGLASWEHITAVRKAL 331 (487)
Q Consensus 259 i~eiv~~v~~~~-~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~----~g-~~~g~~~~~~i~~i~~~~ 331 (487)
+.+.++.+++.. + +||+++ ++. ..+.++.+.++|+|+|.| |..... +. ...|.+....+.++.+.+
T Consensus 270 ~~~~i~~lk~~~~~~~~Vi~G-----~V~-t~~~a~~l~~aGad~I~V-g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~ 342 (503)
T 1me8_A 270 QKITIGWIREKYGDKVKVGAG-----NIV-DGEGFRYLADAGADFIKI-GIGGGSICITREQKGIGRGQATAVIDVVAER 342 (503)
T ss_dssp HHHHHHHHHHHHGGGSCEEEE-----EEC-SHHHHHHHHHHTCSEEEE-CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCCCceEeec-----ccc-CHHHHHHHHHhCCCeEEe-cccCCcCcccccccCCCCchHHHHHHHHHHH
Confidence 444556677665 4 888875 332 345567788999999999 653210 00 011345566666665443
Q ss_pred ---------CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 332 ---------TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 332 ---------~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++|||+.|||.++.|+.+++ ..|||+||+|+.++.-
T Consensus 343 ~~~~~~~~~~ipvia~GGi~~~~di~kAl-alGA~~V~iG~~~~~~ 387 (503)
T 1me8_A 343 NKYFEETGIYIPVCSDGGIVYDYHMTLAL-AMGADFIMLGRYFARF 387 (503)
T ss_dssp HHHHHHHSEECCEEEESCCCSHHHHHHHH-HTTCSEEEESHHHHTB
T ss_pred HHHhhhcCCCceEEEeCCCCCHHHHHHHH-HcCCCEEEECchhhcc
Confidence 69999999999999999999 7899999999998754
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.5e-05 Score=80.86 Aligned_cols=135 Identities=17% Similarity=0.227 Sum_probs=100.3
Q ss_pred CHHHHHHHHHhhC-CcCcEEEeec------CCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeeccccc
Q psy7343 214 DSKNLTEAAKLAE-PHCDGIDINI------GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDV 284 (487)
Q Consensus 214 d~~~~~~aa~~~~-~~~d~IdiN~------GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~ 284 (487)
+++++.+.++.+. +.|+.|.++. |.. . ....+|....++.+...++++++++++ ++++.+...-+++.
T Consensus 152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~-~--~s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~ 228 (407)
T 2o56_A 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNW-N--QQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDT 228 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCB-S--CSCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccCCcCcc-c--cCcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 7888887776554 4599999986 431 1 011111111234566778899999877 57788776556777
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++..++++.++++|++.|-- + . ...+++..+++++.+++||++.+.+.+.++++++++...+|.|++
T Consensus 229 ~~a~~~~~~l~~~~i~~iE~--------P-~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 295 (407)
T 2o56_A 229 TSAIQFGRMIEELGIFYYEE--------P-V-MPLNPAQMKQVADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQP 295 (407)
T ss_dssp HHHHHHHHHHGGGCCSCEEC--------S-S-CSSSHHHHHHHHHHCCSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred HHHHHHHHHHHhcCCCEEeC--------C-C-ChhhHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence 88899999999999997742 1 1 235799999999999999999999999999999997777898865
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=4.3e-06 Score=85.95 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=106.3
Q ss_pred CCceEEecCCC--C----CCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcc
Q psy7343 78 SPRFILAPMVD--A----SELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRF 151 (487)
Q Consensus 78 ~~~~~LAPMag--~----td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~ 151 (487)
+.|+++|||++ + +|.+|++.|+++|+..++++ +++..+-. . ... .+.|..+|+.... .+..+.
T Consensus 72 ~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G~~~~vss-~s~~~le~----i----~~~-~~~~~~fQly~~~-~~~~~~ 140 (380)
T 1p4c_A 72 SMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLST-ASNMSIED----L----ARQ-CDGDLWFQLYVIH-REIAQG 140 (380)
T ss_dssp SSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECT-TCSSCHHH----H----HHH-CCSCEEEEECCSS-HHHHHH
T ss_pred CCceEecCccccccCCCcHHHHHHHHHHHcCCCeecCc-cccCCHHH----H----Hhc-cCCCeEEEEEech-HHHHHH
Confidence 66899999976 6 99999999999999999997 44444421 1 111 3578888974221 011111
Q ss_pred cccc--ccCC------CchH---HHHHHHHhCCcc--c--ee-------ccc---cchhh---hc---ChhHHHHHHh--
Q psy7343 152 ILAP--MVDA------SELP---WRLLSRRYGSHL--C--YT-------PMV---SAHQF---IA---DKKLRQEILM-- 198 (487)
Q Consensus 152 ~lAp--ma~~------td~~---fr~i~~~~Ga~l--~--~t-------~~v---~~~~L---l~---~~~~~~~~l~-- 198 (487)
++.- .+|+ .|.+ .|..+.+.|..+ . .. .++ .++++ +. ++....+.++
T Consensus 141 ~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i 220 (380)
T 1p4c_A 141 MVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWL 220 (380)
T ss_dssp HHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHH
Confidence 1100 1111 1221 122334444211 0 00 011 11211 11 4433333333
Q ss_pred cCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEe--ecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEE
Q psy7343 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDI--NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVS 275 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~Idi--N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~ 275 (487)
....+.||++|.. ..++ .++.+.++ +|+|.+ +.|- + .. + ...+++.+.++. +.+++||+
T Consensus 221 ~~~~~~Pv~vkgv-~t~e----~a~~a~~aGad~I~vs~~gg~-~---~d---~--~~~~~~~l~~v~----~~~~~pVi 282 (380)
T 1p4c_A 221 RDLWPHKLLVKGL-LSAE----DADRCIAEGADGVILSNHGGR-Q---LD---C--AISPMEVLAQSV----AKTGKPVL 282 (380)
T ss_dssp HHHCCSEEEEEEE-CCHH----HHHHHHHTTCSEEEECCGGGT-S---CT---T--CCCGGGTHHHHH----HHHCSCEE
T ss_pred HHhcCCCEEEEec-CcHH----HHHHHHHcCCCEEEEcCCCCC-c---CC---C--CcCHHHHHHHHH----HHcCCeEE
Confidence 1223689999843 2333 34444444 788877 2221 1 00 1 123566666644 44577999
Q ss_pred EEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 276 CKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 276 vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
+.+ ++.+..++.+.+. .|+|+|++ ||.
T Consensus 283 a~G----GI~~~~dv~kal~-~GAdaV~i-Gr~ 309 (380)
T 1p4c_A 283 IDS----GFRRGSDIVKALA-LGAEAVLL-GRA 309 (380)
T ss_dssp ECS----SCCSHHHHHHHHH-TTCSCEEE-SHH
T ss_pred EEC----CCCCHHHHHHHHH-hCCcHhhe-hHH
Confidence 997 7888899998886 89999999 773
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=7.5e-05 Score=72.19 Aligned_cols=127 Identities=23% Similarity=0.328 Sum_probs=88.3
Q ss_pred HHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc---ccccHHHHHHHHH
Q psy7343 219 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ---DVNKTVEYARMLE 295 (487)
Q Consensus 219 ~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~---d~~~~~e~a~~le 295 (487)
.++...++..+|.||+.+.. |.....+|+.+.+-+.++++.++ ...+|+-+.. +.++....++...
T Consensus 115 ~Ea~~Ai~~GAdEIDmViNi----------g~lk~g~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~Lt~eei~~A~~ia~ 183 (260)
T 3r12_A 115 HEAIFAVESGADEIDMVINV----------GMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVISK 183 (260)
T ss_dssp HHHHHHHHHTCSEEEEECCH----------HHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeeh----------hhhccccHHHHHHHHHHHHHhcC-CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44555566668888864221 33333478988888888888774 2334554421 3345677788888
Q ss_pred HcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 296 RAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 296 ~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
++|+|+|--+ | |...+.+..+.++.+++.+ +++|-++|||+|.+|+.+++ +.||+.+....
T Consensus 184 eaGADfVKTS--T----Gf~~~GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi-~aGA~RiGtS~ 246 (260)
T 3r12_A 184 LAGAHFVKTS--T----GFGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMI-MYGADRIGTSS 246 (260)
T ss_dssp HTTCSEEECC--C----SSSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH-HTTCSEEEESC
T ss_pred HhCcCEEEcC--C----CCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-HcCCceeecch
Confidence 9999999762 1 2233557777787777765 69999999999999999999 79999655443
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=97.96 E-value=7.1e-05 Score=71.30 Aligned_cols=128 Identities=22% Similarity=0.311 Sum_probs=89.2
Q ss_pred HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---c----ccccHHHH
Q psy7343 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---Q----DVNKTVEY 290 (487)
Q Consensus 218 ~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~----d~~~~~e~ 290 (487)
..++...++...|.||+.+.. |.....+|+.+.+-+.++++.++ ...+|+-+. . +.++....
T Consensus 83 ~~E~~~Ai~~GAdEIDmVini----------g~lk~g~~~~v~~ei~~v~~a~~-~~~lKvIiEt~~L~~~~t~eei~~a 151 (231)
T 3ndo_A 83 ATEAELAVAAGATEIDMVIDV----------GAALAGDLDAVSADITAVRKAVR-AATLKVIVESAALLEFSGEPLLADV 151 (231)
T ss_dssp HHHHHHHHHTTCSEEEEECCH----------HHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeeh----------HhhhcccHHHHHHHHHHHHHHcc-CCceEEEEECcccCCCCCHHHHHHH
Confidence 345555666668888865322 33333578988888888888874 234465442 1 34456677
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCC-CCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMN-TGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~-~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
++...++|+|+|--+ - |.. .+.+..+.++.+++.+ +++|-++|||+|.+|+.+++ +.||+.+....
T Consensus 152 ~~ia~~aGADfVKTS-T-----Gf~~~~gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i-~aGa~RiGtS~ 220 (231)
T 3ndo_A 152 CRVARDAGADFVKTS-T-----GFHPSGGASVQAVEIMARTVGERLGVKASGGIRTAEQAAAML-DAGATRLGLSG 220 (231)
T ss_dssp HHHHHHTTCSEEECC-C-----SCCTTCSCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHH-HTTCSEEEESS
T ss_pred HHHHHHHCcCEEEcC-C-----CCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-Hhcchhcccch
Confidence 788889999999652 1 112 3557788888887775 69999999999999999999 79999554443
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=4.1e-05 Score=72.32 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=60.4
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccC--CCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVD--QRGMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~--~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.+..+ +..+.+.|+|+|.+ +.... ...++.....|+.++++++.++ +||++.|||+ ++++.+++ +.|+|+|.+
T Consensus 124 ~t~~e-~~~a~~~g~d~v~~-~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~-~~Ga~gv~v 199 (227)
T 2tps_A 124 HTMSE-VKQAEEDGADYVGL-GPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVI-QAGADGVSM 199 (227)
T ss_dssp CSHHH-HHHHHHHTCSEEEE-CCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHH-HTTCSEEEE
T ss_pred CCHHH-HHHHHhCCCCEEEE-CCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHH-HcCCCEEEE
Confidence 34555 45567889999997 32111 1111123346899999998887 9999999999 99999988 689999999
Q ss_pred ccccccCc
Q psy7343 362 AEGNLYNP 369 (487)
Q Consensus 362 GRa~l~~P 369 (487)
|++++..+
T Consensus 200 gs~i~~~~ 207 (227)
T 2tps_A 200 ISAISQAE 207 (227)
T ss_dssp SHHHHTSS
T ss_pred hHHhhcCC
Confidence 99998753
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.5e-05 Score=78.95 Aligned_cols=126 Identities=11% Similarity=0.100 Sum_probs=100.3
Q ss_pred CHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccc-cccHHH
Q psy7343 214 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQD-VNKTVE 289 (487)
Q Consensus 214 d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d-~~~~~e 289 (487)
+++++.+.++.+ ++.++.|.|+.|++ | .+++...+.++++|+++ ++++.+...-+++ ..+..+
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKlk~g~~---------g----~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~ 212 (374)
T 3sjn_A 146 KPEDNVAIVQGLKDQGFSSIKFGGGVM---------G----DDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAM 212 (374)
T ss_dssp SGGGGHHHHHHHHTTTCSEEEEECTTT---------T----SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCCC---------C----CCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHH
Confidence 347777766654 55699999999874 1 24677778888899886 5788887666777 778889
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+++.+++.|++.|-= + . .+.+++..+++++.+++||++.+.+.+.+++.++++...+|.|++-
T Consensus 213 ~~~~l~~~~i~~iEq--------P-~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 275 (374)
T 3sjn_A 213 MAKRLEEFNLNWIEE--------P-V-LADSLISYEKLSRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPD 275 (374)
T ss_dssp HHHHSGGGCCSEEEC--------S-S-CTTCHHHHHHHHHHCSSEEEECTTCCHHHHHHHHHHHHCCSEECCB
T ss_pred HHHHhhhcCceEEEC--------C-C-CcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999998841 1 1 2347899999999999999999999999999999987889988753
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.5e-05 Score=80.43 Aligned_cols=123 Identities=14% Similarity=0.114 Sum_probs=96.3
Q ss_pred CCH-HHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHH
Q psy7343 213 NDS-KNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 213 ~d~-~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~ 288 (487)
.++ +.+.+.++.+.+ .|+.|.++.|+ +++...++++++++++ ++++.+...-+++.++..
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai 246 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGD----------------AARVDIERVRHVRKVLGDEVDILTDANTAYTMADAR 246 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHH
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 467 778777665544 48999988765 3566677888888876 577777665567778889
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++++.++++|++.|- + + . ...+++..+++++.++ +||++.+.+.+.++++++++...+|.|++
T Consensus 247 ~~~~~L~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 310 (428)
T 3bjs_A 247 RVLPVLAEIQAGWLE-------E-P-F-ACNDFASYREVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQP 310 (428)
T ss_dssp HHHHHHHHTTCSCEE-------C-C-S-CTTCHHHHHHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHhcCCCEEE-------C-C-C-CccCHHHHHHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEe
Confidence 999999999999764 1 1 1 2357899999999998 99999999999999999996666888765
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00014 Score=73.49 Aligned_cols=132 Identities=18% Similarity=0.113 Sum_probs=97.9
Q ss_pred CCeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIY 281 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~ 281 (487)
.|+...+.+.+++++.+.++.+ ++.|+.|.|+.|+ +++.-.++++++++.- ++++.+...-+
T Consensus 129 v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~avr~~g~~~~l~vDan~~ 192 (345)
T 2zad_A 129 IETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGE----------------NLKEDIEAVEEIAKVTRGAKYIVDANMG 192 (345)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHSTTCEEEEECTTC
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCcCEEEEeecC----------------CHHHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 3444445456888887776654 4458999888765 2444456677787762 35565554445
Q ss_pred cccccHHHHHHHHHHcCCc--EEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 282 QDVNKTVEYARMLERAGCQ--LLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d--~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
++.++..++++.++++|++ .|- | + . ...+++..+++++.+++||++.+.+.+.+++.++++...+|.|
T Consensus 193 ~~~~~a~~~~~~l~~~~i~~~~iE-------~-P-~-~~~~~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v 262 (345)
T 2zad_A 193 YTQKEAVEFARAVYQKGIDIAVYE-------Q-P-V-RREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYV 262 (345)
T ss_dssp SCHHHHHHHHHHHHHTTCCCSEEE-------C-C-S-CTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHHTCCSEE
T ss_pred CCHHHHHHHHHHHHhcCCCeeeee-------C-C-C-CcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHhCCCCEE
Confidence 6777888999999999999 663 2 1 2 2357899999999999999999999999999999977779999
Q ss_pred Ee
Q psy7343 360 MT 361 (487)
Q Consensus 360 mi 361 (487)
++
T Consensus 263 ~i 264 (345)
T 2zad_A 263 NI 264 (345)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00012 Score=73.48 Aligned_cols=179 Identities=12% Similarity=0.090 Sum_probs=104.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+.++++|||+|+|+..++..+.+.|+ +++.+.+++.+.+... .+.+.. ..+.|+.+++... ++.
T Consensus 26 ~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~----i~~i~~-~~~~p~gVnl~~~----~~~------ 90 (326)
T 3bo9_A 26 EHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKA----ISELRQ-KTDKPFGVNIILV----SPW------ 90 (326)
T ss_dssp SSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHH----HHHHHT-TCSSCEEEEEETT----STT------
T ss_pred CCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHH----HHHHHH-hcCCCEEEEEecc----CCC------
Confidence 66899999999999999999999987 7888887766554221 111111 1257888886321 110
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN 235 (487)
....-.+..+.|++....... ++....+.++. .+.++++++. +.+.. +.+++. .|+|-++
T Consensus 91 ----~~~~~~~~~~~g~d~V~l~~g-------~p~~~~~~l~~--~g~~v~~~v~--s~~~a----~~a~~~GaD~i~v~ 151 (326)
T 3bo9_A 91 ----ADDLVKVCIEEKVPVVTFGAG-------NPTKYIRELKE--NGTKVIPVVA--SDSLA----RMVERAGADAVIAE 151 (326)
T ss_dssp ----HHHHHHHHHHTTCSEEEEESS-------CCHHHHHHHHH--TTCEEEEEES--SHHHH----HHHHHTTCSCEEEE
T ss_pred ----HHHHHHHHHHCCCCEEEECCC-------CcHHHHHHHHH--cCCcEEEEcC--CHHHH----HHHHHcCCCEEEEE
Confidence 011234556678766443221 22222233322 2567777663 33332 223333 6666664
Q ss_pred cCCCcceeeccC-ccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 236 IGCPQMVAKRGH-YGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 236 ~GcP~~i~~~gr-~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
... .|+ .| . ..+++.+.+ +++.+++||++.+ .+.+..++.+.+. .|+++|.+ |+.
T Consensus 152 g~~------~GG~~G-~-~~~~~ll~~----i~~~~~iPviaaG----GI~~~~dv~~al~-~GA~gV~v-Gs~ 207 (326)
T 3bo9_A 152 GME------SGGHIG-E-VTTFVLVNK----VSRSVNIPVIAAG----GIADGRGMAAAFA-LGAEAVQM-GTR 207 (326)
T ss_dssp CTT------SSEECC-S-SCHHHHHHH----HHHHCSSCEEEES----SCCSHHHHHHHHH-HTCSEEEE-SHH
T ss_pred CCC------CCccCC-C-ccHHHHHHH----HHHHcCCCEEEEC----CCCCHHHHHHHHH-hCCCEEEe-chH
Confidence 211 111 12 1 234555554 4555689999997 6667778777775 79999999 664
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=6.8e-05 Score=70.08 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccC-CCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVD-QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~-~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+..++ ..+.+.|+|+|.+++.... ..++ ....+|+.++++++..++||++.|||+ .+++.+++ +.|+|+|++|++
T Consensus 117 t~~e~-~~~~~~g~d~i~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~-~~Ga~gv~vgs~ 192 (215)
T 1xi3_A 117 SLEEA-LEAEKKGADYLGAGSVFPTKTKED-ARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVL-KTGVDGIAVISA 192 (215)
T ss_dssp SHHHH-HHHHHHTCSEEEEECSSCC----C-CCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHH-TTTCSEEEESHH
T ss_pred CHHHH-HHHHhcCCCEEEEcCCccCCCCCC-CCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHH-HcCCCEEEEhHH
Confidence 44553 4567789999998653211 1111 224578999999988899999999999 99999988 689999999999
Q ss_pred cccCcc
Q psy7343 365 NLYNPA 370 (487)
Q Consensus 365 ~l~~P~ 370 (487)
++..|+
T Consensus 193 i~~~~d 198 (215)
T 1xi3_A 193 VMGAED 198 (215)
T ss_dssp HHTSSS
T ss_pred HhCCCC
Confidence 988763
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.1e-05 Score=78.62 Aligned_cols=133 Identities=21% Similarity=0.290 Sum_probs=100.4
Q ss_pred CHHHHHHHHHhh-CCcCcEEEeec----CCCcceeeccCcccccc--CChHHHHHHHHHHhhhc--cCcEEEEeeccccc
Q psy7343 214 DSKNLTEAAKLA-EPHCDGIDINI----GCPQMVAKRGHYGAYLQ--DDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDV 284 (487)
Q Consensus 214 d~~~~~~aa~~~-~~~~d~IdiN~----GcP~~i~~~gr~G~~l~--~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~ 284 (487)
+++++.+.++.+ ++.|+.|.++. |.... . +++.+. ++.+...++++++++++ ++++.+...-+++.
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~----~-~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~ 223 (410)
T 2qq6_A 149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHR----D-FWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDI 223 (410)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCS----C-SSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeccccCCcccC----C-cCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence 677777766654 44599999997 54211 1 233332 35677788899999887 46777766556677
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++..++++.++++|++.|-- + . ...+++..+++++.+++||++.+.+.+.++++++++...+|.|++
T Consensus 224 ~~a~~~~~~l~~~~i~~iEe--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 290 (410)
T 2qq6_A 224 PSSIRFARAMEPFGLLWLEE--------P-T-PPENLDALAEVRRSTSTPICAGENVYTRFDFRELFAKRAVDYVMP 290 (410)
T ss_dssp HHHHHHHHHHGGGCCSEEEC--------C-S-CTTCHHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred HHHHHHHHHHhhcCCCeEEC--------C-C-ChhhHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence 78889999999999998742 1 1 235789999999999999999999999999999997777898875
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=8.7e-05 Score=75.39 Aligned_cols=136 Identities=13% Similarity=0.073 Sum_probs=101.0
Q ss_pred CeeeeeccCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc
Q psy7343 205 PLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY 281 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~ 281 (487)
|+...+...+++.+.+.++ .+++.+..+.++.|+. ++.-.+.++++++++ ++++.+...-+
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~g~~----------------~~~d~~~v~avR~a~g~~~~l~vDan~~ 193 (354)
T 3jva_A 130 ITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTG----------------IEADIARVKAIREAVGFDIKLRLDANQA 193 (354)
T ss_dssp ECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSC----------------HHHHHHHHHHHHHHHCTTSEEEEECTTC
T ss_pred eeeEEeCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC----------------HHHHHHHHHHHHHHcCCCCeEEEECCCC
Confidence 3334445567888776655 4455588888877652 234456677788776 57777776667
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.++..++++.+++.|++.|- | + . .+.+++..+++++.+++||++.+.+.+.+++.++++...+|.|++
T Consensus 194 ~~~~~a~~~~~~L~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~ 263 (354)
T 3jva_A 194 WTPKDAVKAIQALADYQIELVE-------Q-P-V-KRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINI 263 (354)
T ss_dssp SCHHHHHHHHHHTTTSCEEEEE-------C-C-S-CTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEE-------C-C-C-ChhhHHHHHHHHHhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEE
Confidence 7888888999999998888774 2 1 2 234789999999999999999999999999999997778999987
Q ss_pred ccccc
Q psy7343 362 AEGNL 366 (487)
Q Consensus 362 GRa~l 366 (487)
--..+
T Consensus 264 k~~~~ 268 (354)
T 3jva_A 264 KLMKC 268 (354)
T ss_dssp CHHHH
T ss_pred Cchhc
Confidence 64433
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00012 Score=74.61 Aligned_cols=97 Identities=10% Similarity=0.053 Sum_probs=66.1
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeeccCC----------HHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFCGND----------SKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGA 250 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~d----------~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~ 250 (487)
+.+......++++ ....+ ||+|+|...+ .+++.++++.+++. .|.|++..|. .+.
T Consensus 207 lenR~rf~~evv~aVr~~vg~~-~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~---------~~~ 276 (361)
T 3gka_A 207 IENRARLLLEVVDAAIDVWSAA-RVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESF---------GGD 276 (361)
T ss_dssp HHHHSHHHHHHHHHHHHHHCGG-GEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC---------STT
T ss_pred hhhcHHHHHHHHHHHHHHcCCC-eEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCC---------CCH
Confidence 3334444555553 23334 9999988532 35678889988877 7888887553 111
Q ss_pred cccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
++++.+++.+++||++++ ++ +..++.+.+++.++|.|++ ||.
T Consensus 277 ----------~~~~~ik~~~~iPvi~~G----gi-t~e~a~~~l~~G~aD~V~i-GR~ 318 (361)
T 3gka_A 277 ----------AIGQQLKAAFGGPFIVNE----NF-TLDSAQAALDAGQADAVAW-GKL 318 (361)
T ss_dssp ----------CCHHHHHHHHCSCEEEES----SC-CHHHHHHHHHTTSCSEEEE-SHH
T ss_pred ----------HHHHHHHHHcCCCEEEeC----CC-CHHHHHHHHHcCCccEEEE-CHH
Confidence 234567777899999997 45 6677777777767999999 885
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.7e-05 Score=79.92 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=107.9
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccC----------ccc-------cccCChHHHHHHH
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGH----------YGA-------YLQDDWPLLTNLV 263 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr----------~G~-------~l~~d~~~i~eiv 263 (487)
...|+...+.+.+++++.+.++.. ++.|..+.+..|+|...+..+. .+. ...++.+...+++
T Consensus 131 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v 210 (418)
T 3r4e_A 131 DGIMVYGHANGSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLF 210 (418)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHH
T ss_pred CeeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 345555555567888888776654 5569999999998642221110 000 0011245667788
Q ss_pred HHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCC
Q psy7343 264 SSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNI 341 (487)
Q Consensus 264 ~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI 341 (487)
+++|+++ ++++.+...-+++..+..++++.+++.|++.|.= + . .+.+++..+++++.+++||++.+.+
T Consensus 211 ~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~~ 280 (418)
T 3r4e_A 211 EELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLED--------C-T-PAENQEAFRLVRQHTVTPLAVGEIF 280 (418)
T ss_dssp HHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEES--------C-S-CCSSGGGGHHHHHHCCSCEEECTTC
T ss_pred HHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEEC--------C-C-CccCHHHHHHHHhcCCCCEEEcCCc
Confidence 8899887 5788887766778888999999999999998841 1 1 2346788899999999999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEec
Q psy7343 342 QCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 342 ~s~~da~~~l~~~Gad~VmiG 362 (487)
.+.+++.++++...+|.|++-
T Consensus 281 ~~~~~~~~~l~~~a~d~v~~k 301 (418)
T 3r4e_A 281 NTIWDAKDLIQNQLIDYIRAT 301 (418)
T ss_dssp CSGGGTHHHHHTTCCSEECCC
T ss_pred CCHHHHHHHHHcCCCCeEecC
Confidence 999999999976778988754
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.9e-05 Score=79.13 Aligned_cols=111 Identities=9% Similarity=-0.011 Sum_probs=72.6
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeeccCC----------HHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFCGND----------SKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGA 250 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~d----------~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~ 250 (487)
+.+......++++ ....+ ||+|+|...+ .+++.++++.+++. .|.|+++.|. .|.
T Consensus 199 lenR~rf~~eiv~aVr~~vg~~-~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~---------~~~ 268 (362)
T 4ab4_A 199 LENRARLLLEVTDAAIEVWGAQ-RVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSRERE---------ADD 268 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC---------CTT
T ss_pred hhhHHHHHHHHHHHHHHhcCCC-ceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC---------CCH
Confidence 3334444455553 23334 9999998542 35678889988877 7888887553 111
Q ss_pred cccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh
Q psy7343 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~ 330 (487)
++++.+++.+++||++++ ++ +..++.+.+++.++|.|++ ||.... +-+++.++++.
T Consensus 269 ----------~~~~~ik~~~~iPvi~~G----gi-t~e~a~~~l~~g~aD~V~i-GR~~la--------nPdl~~k~~~g 324 (362)
T 4ab4_A 269 ----------SIGPLIKEAFGGPYIVNE----RF-DKASANAALASGKADAVAF-GVPFIA--------NPDLPARLAAD 324 (362)
T ss_dssp ----------CCHHHHHHHHCSCEEEES----SC-CHHHHHHHHHTTSCSEEEE-SHHHHH--------CTTHHHHHHTT
T ss_pred ----------HHHHHHHHHCCCCEEEeC----CC-CHHHHHHHHHcCCccEEEE-CHHhHh--------CcHHHHHHHcC
Confidence 234567777899999997 45 6677777777777999999 885322 22346666654
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00016 Score=74.24 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=104.5
Q ss_pred CCeeeeeccCCHHHHHHHHH-hhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 204 RPLIIQFCGNDSKNLTEAAK-LAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~-~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
.|+...+...+++++.+.++ .+++ .+..+.+..|+ .+++.-.+.++++++.+ ++++.+...
T Consensus 138 v~~~~t~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~---------------~~~~~d~~~v~avR~a~g~~~~l~vDan 202 (383)
T 3i4k_A 138 VDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGA---------------GDPAEDTRRVAELAREVGDRVSLRIDIN 202 (383)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHHHCCSEEEEECCS---------------SCHHHHHHHHHHHHHTTTTTSEEEEECT
T ss_pred EEEeEEeeCCCHHHHHHHHHHHHHhcCCcEEEEeeCC---------------CCHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 44544455567777765544 5565 67888777665 14566667888899887 478888877
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+|+..+..++++.+++.|++.|- | + . ...+++..+++++.+++||++.+.+.+.+++.++++...+|.|
T Consensus 203 ~~~~~~~A~~~~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v 272 (383)
T 3i4k_A 203 ARWDRRTALHYLPILAEAGVELFE-------Q-P-T-PADDLETLREITRRTNVSVMADESVWTPAEALAVVKAQAADVI 272 (383)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCEEE-------S-C-S-CTTCHHHHHHHHHHHCCEEEESTTCSSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEE-------C-C-C-ChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEE
Confidence 778888899999999999999884 2 1 2 2347899999999999999999999999999999977789999
Q ss_pred Eeccc
Q psy7343 360 MTAEG 364 (487)
Q Consensus 360 miGRa 364 (487)
++--.
T Consensus 273 ~~k~~ 277 (383)
T 3i4k_A 273 ALKTT 277 (383)
T ss_dssp EECTT
T ss_pred EEccc
Confidence 87543
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.1e-05 Score=77.95 Aligned_cols=136 Identities=15% Similarity=0.076 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccc-cCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHH
Q psy7343 213 NDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYL-QDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 213 ~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l-~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~ 288 (487)
.+++++.+.++. +++.+..+.++.|++.. +..|... ..+++...+.++++|+++ ++++.+...-+++..+..
T Consensus 150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~----~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~ 225 (404)
T 4e5t_A 150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYT----IYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAK 225 (404)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEECCSCCCB----TTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeCCCCCCc----ccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHH
Confidence 477888776654 44459999999888532 1112111 123566677888899887 578888766677888889
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++++.+++.|++.|-- + . .+.+++..+++++.+++||++.+.+.+.+++.++++...+|.|++-
T Consensus 226 ~~~~~l~~~~i~~iEe--------P-~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d 289 (404)
T 4e5t_A 226 RLARRLEAYDPLWFEE--------P-I-PPEKPEDMAEVARYTSIPVATGERLCTKYEFSRVLETGAASILQMN 289 (404)
T ss_dssp HHHHHHGGGCCSEEEC--------C-S-CTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCC
T ss_pred HHHHHHhhcCCcEEEC--------C-C-CcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecC
Confidence 9999999999998852 1 1 2347899999999999999999999999999999977778988654
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.7e-05 Score=75.25 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCC--Ccc---eeeccCccccc--cCChHHHHHHHHHHhhhccCcEEEEeecccc-
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGC--PQM---VAKRGHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD- 283 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~Gc--P~~---i~~~gr~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d- 283 (487)
.+.+...++++.+++. +|.|||.+-- |.. +..+.. --+| --+.+.+.++++.+++. +|+++=+=.+.-
T Consensus 25 P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~-~rAL~~g~~~~~~~~~~~~~r~~--~Pivlm~Y~N~i~ 101 (252)
T 3tha_A 25 PNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAA-KIALDQGVDIHSVFELLARIKTK--KALVFMVYYNLIF 101 (252)
T ss_dssp SCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHH-HHHHHTTCCHHHHHHHHHHCCCS--SEEEEECCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHH-HHHHHCCCCHHHHHHHHHHHhcC--CCEEEEeccCHHH
Confidence 4678899999988776 8999984432 211 111110 0111 13467777888877754 788774311100
Q ss_pred cccHHHHHHHHHHcCCcEEEE-------------------------Ec-ccc--------CC---------CCCCCCCCC
Q psy7343 284 VNKTVEYARMLERAGCQLLAV-------------------------HG-RTV--------DQ---------RGMNTGLAS 320 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~V-------------------------hg-Rt~--------~~---------~g~~~g~~~ 320 (487)
..-.+.+++.+.++|+|++.| -+ .+. .. .-+.+|...
T Consensus 102 ~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~ 181 (252)
T 3tha_A 102 SYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKS 181 (252)
T ss_dssp HHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEECCSCSSSCSH
T ss_pred HhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEEecCCCCCccc
Confidence 012455666666666666654 11 110 00 011334321
Q ss_pred ------HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 321 ------WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 321 ------~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.+.++++|+..++||+..+||++++++.++. . +||||.+|++++.
T Consensus 182 ~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~-~-~ADGVIVGSAiVk 232 (252)
T 3tha_A 182 VEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMR-K-VADGVIVGTSIVK 232 (252)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHT-T-TSSEEEECHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHH-h-cCCEEEECHHHHH
Confidence 3678889999999999999999999999887 3 6999999998774
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=97.86 E-value=5.1e-05 Score=77.17 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=104.2
Q ss_pred CCCeeeeeccCCHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
..|+...+...+++.+.+.++. +++.+..+.++.|+ +++.-.+.++++++.+ ++++.+...
T Consensus 129 ~v~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~G~----------------~~~~d~~~v~avR~~~g~~~~l~vDan 192 (356)
T 3ro6_B 129 SLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCG----------------DEEQDFERLRRLHETLAGRAVVRVDPN 192 (356)
T ss_dssp CEEBCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHTTSSEEEEECT
T ss_pred ceeeeEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3455556666788888776654 45558888887765 3455566777888876 577888776
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc-CCcE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT-GVAG 358 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~-Gad~ 358 (487)
-+|+..+..++++.+++.|++.|- | + + .+.+++..+++++.+++||.+++.+.+..++.++++.. ++|.
T Consensus 193 ~~~~~~~a~~~~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~~d~ 262 (356)
T 3ro6_B 193 QSYDRDGLLRLDRLVQELGIEFIE-------Q-P-F-PAGRTDWLRALPKAIRRRIAADESLLGPADAFALAAPPAACGI 262 (356)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCCEE-------C-C-S-CTTCHHHHHTSCHHHHHTEEESTTCCSHHHHHHHHSSSCSCSE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEE-------C-C-C-CCCcHHHHHHHHhcCCCCEEeCCcCCCHHHHHHHHhcCCcCCE
Confidence 678888889999999999999884 2 1 2 23478999999998999999999999999999999666 7999
Q ss_pred EEeccc
Q psy7343 359 VMTAEG 364 (487)
Q Consensus 359 VmiGRa 364 (487)
|++--+
T Consensus 263 v~~k~~ 268 (356)
T 3ro6_B 263 FNIKLM 268 (356)
T ss_dssp EEECHH
T ss_pred EEEccc
Confidence 987644
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=97.86 E-value=3.1e-05 Score=72.87 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=60.6
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHH
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVE 348 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~ 348 (487)
.++|++... .+..++ ....+.|+|+|.+++- .. .. -.+.++.++..+ ++|+++.|||+ .+++.
T Consensus 103 ~g~~~i~G~------~t~~e~-~~A~~~Gad~v~~fpa--~~---~g---G~~~lk~l~~~~~~ipvvaiGGI~-~~n~~ 166 (207)
T 2yw3_A 103 RGVPYLPGV------LTPTEV-ERALALGLSALKFFPA--EP---FQ---GVRVLRAYAEVFPEVRFLPTGGIK-EEHLP 166 (207)
T ss_dssp HTCCEEEEE------CSHHHH-HHHHHTTCCEEEETTT--TT---TT---HHHHHHHHHHHCTTCEEEEBSSCC-GGGHH
T ss_pred hCCCEEecC------CCHHHH-HHHHHCCCCEEEEecC--cc---cc---CHHHHHHHHhhCCCCcEEEeCCCC-HHHHH
Confidence 467766543 244454 4456789999999541 11 11 257788999888 89999999997 69999
Q ss_pred HHHHhcCCcEEEecccccc
Q psy7343 349 ACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa~l~ 367 (487)
+++ ..|+++|.+|++++.
T Consensus 167 ~~l-~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 167 HYA-ALPNLLAVGGSWLLQ 184 (207)
T ss_dssp HHH-TCSSBSCEEESGGGS
T ss_pred HHH-hCCCcEEEEehhhhC
Confidence 999 899999999999876
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=97.84 E-value=6.2e-05 Score=77.84 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=108.1
Q ss_pred CCCeeeeeccCCHHHHHHHHHh-hCCcCcEEEeecCCCccee-----ecc-Cccccc--cCChHHHHHHHHHHhhhc--c
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVA-----KRG-HYGAYL--QDDWPLLTNLVSSLRQAV--Q 271 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~-----~~g-r~G~~l--~~d~~~i~eiv~~v~~~~--~ 271 (487)
..|+...+.+.+++++.+.++. +++.|..+.+..|++.... .++ .-|..+ ..+.+...++++++|+++ +
T Consensus 122 ~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d 201 (401)
T 3sbf_A 122 AIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQ 201 (401)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred eeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCC
Confidence 4555555556788888876664 4556999999988732100 000 001111 112456677888899887 5
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l 351 (487)
+++.+...-+++..+..++++.+++.|++.|-= + . .+.+++..+++++.+++||++.+.+.+..++.+++
T Consensus 202 ~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iEq--------P-~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i 271 (401)
T 3sbf_A 202 FHILHDVHERLFPNQAIQFAKEVEQYKPYFIED--------I-L-PPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLI 271 (401)
T ss_dssp SEEEEECTTCSCHHHHHHHHHHHGGGCCSCEEC--------S-S-CTTCGGGHHHHHTTCCCCEEECTTCCSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------C-C-ChhHHHHHHHHHhhCCCCEEeCCccCCHHHHHHHH
Confidence 788887766788888999999999999988742 1 1 23467889999999999999999999999999999
Q ss_pred HhcCCcEEEecc
Q psy7343 352 AQTGVAGVMTAE 363 (487)
Q Consensus 352 ~~~Gad~VmiGR 363 (487)
+...+|.|++--
T Consensus 272 ~~~~~d~v~~k~ 283 (401)
T 3sbf_A 272 ANRRIDFIRCHV 283 (401)
T ss_dssp HTTCCSEECCCG
T ss_pred hcCCCCEEecCc
Confidence 777789887643
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00012 Score=69.59 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=90.8
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEEEeec--CCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDINI--GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~--GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
++.-+...|.+++.+.++.+.+. .|.|++.. |.=..+ +...+ ++++.+++.++.|+.+-+
T Consensus 13 i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~---------~~~~~----~~i~~l~~~~~~~~~v~l---- 75 (230)
T 1rpx_A 13 VSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPN---------ITIGP----LVVDSLRPITDLPLDVHL---- 75 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC---------BCCCH----HHHHHHGGGCCSCEEEEE----
T ss_pred EEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccc---------cccCH----HHHHHHHhccCCcEEEEE----
Confidence 34456666777777777776654 66665542 210000 00112 445556666666766654
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEcc--ccC------------------------------------------C-CCCCCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGR--TVD------------------------------------------Q-RGMNTG 317 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgR--t~~------------------------------------------~-~g~~~g 317 (487)
-+.+..+.++.+.++|+|+|++|+- ... . .+++.|
T Consensus 76 ~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~pg~~g 155 (230)
T 1rpx_A 76 MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGG 155 (230)
T ss_dssp ESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTTCSS
T ss_pred EecCHHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEcCCCCC
Confidence 2223556777777888888888876 200 0 012222
Q ss_pred C-CCH---HHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 318 L-ASW---EHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 318 ~-~~~---~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
. ..| +.++++++.+ ++|+++.|||+ ++++.+++ +.|+|+|.+|+++...++
T Consensus 156 ~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~-~aGad~vvvgSaI~~a~d 215 (230)
T 1rpx_A 156 QSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVI-EAGANALVAGSAVFGAPD 215 (230)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHH-HHTCCEEEESHHHHTSSC
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHH-HcCCCEEEEChhhhCCCC
Confidence 2 133 5566677665 79999999998 78888887 679999999999887554
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00014 Score=68.89 Aligned_cols=129 Identities=22% Similarity=0.226 Sum_probs=86.7
Q ss_pred HHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---cccccHHHHHHHHH
Q psy7343 219 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDVNKTVEYARMLE 295 (487)
Q Consensus 219 ~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~d~~~~~e~a~~le 295 (487)
.++.+.++...|+||+.+-. |.....+++.+.+-+.++++.++-+ .+|+-+. .+.++....++...
T Consensus 75 ~e~~~Ai~~GAdevd~vini----------g~~~~g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia~ 143 (220)
T 1ub3_A 75 LEAALACARGADEVDMVLHL----------GRAKAGDLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAAI 143 (220)
T ss_dssp HHHHHHHHTTCSEEEEECCH----------HHHHTTCHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecccc----------hhhhCCCHHHHHHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHHH
Confidence 44555566668888865322 2222347888777777788776422 3343221 13456777888889
Q ss_pred HcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh--CCCcEEEcCCCCCHHHHHHHHHhcCCc--EEEecccc
Q psy7343 296 RAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVA--GVMTAEGN 365 (487)
Q Consensus 296 ~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--~~iPVi~nGgI~s~~da~~~l~~~Gad--~VmiGRa~ 365 (487)
++|+|.|-.+ .|...+.+..+.++.+++. .++||.++|||+|.+|+.+++ +.|++ |+..|+.+
T Consensus 144 eaGADfVKTs------TGf~~~gat~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i-~aGa~RiG~S~g~~I 210 (220)
T 1ub3_A 144 RGGADFLKTS------TGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRML-KAGASRLGTSSGVAL 210 (220)
T ss_dssp HHTCSEEECC------CSSSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH-HTTCSEEEETTHHHH
T ss_pred HhCCCEEEeC------CCCCCCCCCHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHH-HCCCcccchhHHHHH
Confidence 9999999662 1112355677777777764 479999999999999999999 68999 55555543
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00066 Score=68.03 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=103.8
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEcccee-ccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVS-AHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAP 155 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~-a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lAp 155 (487)
+.++++|||+|+|+..++..+.+.|+ +++.+++.+ .+.+...-++..+. .+.|+.+++..... .
T Consensus 15 ~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~-----~~~p~~v~l~v~~~------~--- 80 (328)
T 2gjl_A 15 EHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCREL-----TDRPFGVNLTLLPT------Q--- 80 (328)
T ss_dssp SSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHH-----CSSCCEEEEEECCC------S---
T ss_pred CCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHh-----cCCCeEEEEecccc------c---
Confidence 56799999999999999999999986 888887755 43432111111111 24688888643210 0
Q ss_pred ccCCCc-hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEe
Q psy7343 156 MVDASE-LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDI 234 (487)
Q Consensus 156 ma~~td-~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~Idi 234 (487)
.-.+ ..+-.++.+.|++......- ++....+.++.. +.++++++. +.++ +.+..+...|+|-+
T Consensus 81 --~~~~~~~~~~~~~~~g~d~V~~~~g-------~p~~~~~~l~~~--gi~vi~~v~--t~~~---a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 81 --KPVPYAEYRAAIIEAGIRVVETAGN-------DPGEHIAEFRRH--GVKVIHKCT--AVRH---ALKAERLGVDAVSI 144 (328)
T ss_dssp --SCCCHHHHHHHHHHTTCCEEEEEES-------CCHHHHHHHHHT--TCEEEEEES--SHHH---HHHHHHTTCSEEEE
T ss_pred --cCccHHHHHHHHHhcCCCEEEEcCC-------CcHHHHHHHHHc--CCCEEeeCC--CHHH---HHHHHHcCCCEEEE
Confidence 0011 12334566778776543221 222222233322 567776652 3332 22222333777766
Q ss_pred ecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 235 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 235 N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
. |. .. -|..|..-..+++ ++..+++.+++||++.+ .+.+..++.+.+. .|+|+|.+ |+.
T Consensus 145 ~-g~-~~---GG~~G~~~~~~~~----~l~~v~~~~~iPviaaG----GI~~~~~v~~al~-~GAdgV~v-Gs~ 203 (328)
T 2gjl_A 145 D-GF-EC---AGHPGEDDIPGLV----LLPAAANRLRVPIIASG----GFADGRGLVAALA-LGADAINM-GTR 203 (328)
T ss_dssp E-CT-TC---SBCCCSSCCCHHH----HHHHHHTTCCSCEEEES----SCCSHHHHHHHHH-HTCSEEEE-SHH
T ss_pred E-CC-CC---CcCCCCccccHHH----HHHHHHHhcCCCEEEEC----CCCCHHHHHHHHH-cCCCEEEE-CHH
Confidence 4 21 00 0111211112344 44556667799999998 5656677777665 79999999 764
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00045 Score=70.71 Aligned_cols=134 Identities=10% Similarity=0.120 Sum_probs=100.1
Q ss_pred CCeeeeeccCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeec
Q psy7343 204 RPLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRI 280 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~ 280 (487)
.|+...+...++++..+.++ .+++.+..+.+..|. .+++.-.+.++++++.+ ++++.+...-
T Consensus 136 v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~---------------~~~~~d~~~v~avR~~~g~~~~l~vDan~ 200 (377)
T 3my9_A 136 IPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGV---------------KPHAEELRILETMRGEFGERIDLRLDFNQ 200 (377)
T ss_dssp EEBCEEECCSSHHHHHHHHHHHTTTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEccCC---------------CcHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 34444454457777665554 445557777766554 13444556777788776 5778887766
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+|+..+..++++.+++.|++.|- | + . .+.+++..+++++.+++||.+.+.+.+..++.++++...+|.|+
T Consensus 201 ~~~~~~A~~~~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ 270 (377)
T 3my9_A 201 ALTPFGAMKILRDVDAFRPTFIE-------Q-P-V-PRRHLDAMAGFAAALDTPILADESCFDAVDLMEVVRRQAADAIS 270 (377)
T ss_dssp CCCTTTHHHHHHHHHTTCCSCEE-------C-C-S-CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEE
T ss_pred CcCHHHHHHHHHHHhhcCCCEEE-------C-C-C-CccCHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEE
Confidence 78888999999999999998874 2 1 1 23478999999999999999999999999999999777899988
Q ss_pred ec
Q psy7343 361 TA 362 (487)
Q Consensus 361 iG 362 (487)
+-
T Consensus 271 ~k 272 (377)
T 3my9_A 271 VK 272 (377)
T ss_dssp CC
T ss_pred ec
Confidence 64
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=97.76 E-value=4.4e-05 Score=72.61 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+....+...+-.|...|-+.+ +. ..+ +.+.++++++.+ ++||++.|||+|++++++++ .|||+|.+|++
T Consensus 141 ~~~~~a~~a~~~g~~~VYld~-sG-----~~~--~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~--~gAD~VVVGSa 210 (228)
T 3vzx_A 141 DIVAYARVSELLQLPIFYLEY-SG-----VLG--DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA--EHADVIVVGNA 210 (228)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC-TT-----SCC--CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH--TTCSEEEECTH
T ss_pred HHHHHHHHHHHcCCCEEEecC-CC-----CcC--CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH--hCCCEEEEChH
Confidence 445556666667888887755 21 112 789999999999 89999999999999999998 49999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
+..||.++.
T Consensus 211 ~v~~p~~~~ 219 (228)
T 3vzx_A 211 VYEDFDRAL 219 (228)
T ss_dssp HHHCHHHHH
T ss_pred HhcCHHHHH
Confidence 999998865
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00022 Score=73.46 Aligned_cols=140 Identities=13% Similarity=0.085 Sum_probs=107.4
Q ss_pred CCCeeeeec---cCCHHHHHHHH-Hh-hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEE
Q psy7343 203 DRPLIIQFC---GNDSKNLTEAA-KL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVS 275 (487)
Q Consensus 203 ~~Pv~Vqi~---g~d~~~~~~aa-~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~ 275 (487)
..|+...+. ..+++++.+.+ +. +++.+..+.+..|++... ...+++.-.+.++++++++ ++++.
T Consensus 125 ~v~~y~s~~g~~~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~---------~~~~~~~d~~~v~avR~a~g~~~~l~ 195 (393)
T 4dwd_A 125 RLPCYSSIGGNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTR---------CDVDIPGDIAKARAVRELLGPDAVIG 195 (393)
T ss_dssp EEEEEEEECCCSSSCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC---------CSCCHHHHHHHHHHHHHHHCTTCCEE
T ss_pred ceeeEEecCccCCCCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc---------cccCHHHHHHHHHHHHHHhCCCCeEE
Confidence 456655542 35678887766 54 444589999998885321 2346777788888999886 67888
Q ss_pred EEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 276 CKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 276 vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
+...-+++..+..++++.+++.|++.|-= + . .+.+++..+++++.+++||.+.+.+.+.+++.++++..
T Consensus 196 vDaN~~~~~~~A~~~~~~L~~~~i~~iEq--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~- 264 (393)
T 4dwd_A 196 FDANNGYSVGGAIRVGRALEDLGYSWFEE--------P-V-QHYHVGAMGEVAQRLDITVSAGEQTYTLQALKDLILSG- 264 (393)
T ss_dssp EECTTCCCHHHHHHHHHHHHHTTCSEEEC--------C-S-CTTCHHHHHHHHHHCSSEEEBCTTCCSHHHHHHHHHHT-
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCEEEC--------C-C-CcccHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcC-
Confidence 87766788888899999999999998842 1 2 23478999999999999999999999999999999666
Q ss_pred CcEEEec
Q psy7343 356 VAGVMTA 362 (487)
Q Consensus 356 ad~VmiG 362 (487)
+|.|++-
T Consensus 265 ~d~v~~k 271 (393)
T 4dwd_A 265 VRMVQPD 271 (393)
T ss_dssp CCEECCC
T ss_pred CCEEEeC
Confidence 9988754
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00011 Score=76.81 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=95.9
Q ss_pred cCCHHHHHHHHHhhC-CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHH
Q psy7343 212 GNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 212 g~d~~~~~~aa~~~~-~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~ 288 (487)
+.+++++.+.++.+. +.|+.|.|+.|. +.+...+.++++++++ ++++.+...-+++.++..
T Consensus 196 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~ 259 (441)
T 2hxt_A 196 GYSDEKLVRLAKEAVADGFRTIKLKVGA----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAI 259 (441)
T ss_dssp TSCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEccCC----------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 347888887766554 458999888763 3555667788888876 577777655567777888
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++++.++++|++.|-- + . ...+++..+++++.+ ++||++.+.+.+.+++.++++...+|.|++
T Consensus 260 ~~~~~l~~~~i~~iEq--------P-~-~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 323 (441)
T 2hxt_A 260 DWMRQLAEFDIAWIEE--------P-T-SPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQI 323 (441)
T ss_dssp HHHHTTGGGCCSCEEC--------C-S-CTTCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTCCSEECC
T ss_pred HHHHHHHhcCCCeeeC--------C-C-CHHHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEe
Confidence 9999999999997642 1 2 235789999999987 699999999999999999997777898876
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00015 Score=69.27 Aligned_cols=143 Identities=13% Similarity=0.200 Sum_probs=86.8
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.|+.+-+..+|++.+.+.+..+ .+|+|-+|.... .. +...+.++.+++. ++.+.+-+
T Consensus 62 ~~~~~vhlmv~dp~~~i~~~~~a--Gadgv~vh~e~~--------~~-------~~~~~~~~~i~~~-g~~~gv~~---- 119 (230)
T 1tqj_A 62 KKTLDVHLMIVEPEKYVEDFAKA--GADIISVHVEHN--------AS-------PHLHRTLCQIREL-GKKAGAVL---- 119 (230)
T ss_dssp CSEEEEEEESSSGGGTHHHHHHH--TCSEEEEECSTT--------TC-------TTHHHHHHHHHHT-TCEEEEEE----
T ss_pred CCcEEEEEEccCHHHHHHHHHHc--CCCEEEECcccc--------cc-------hhHHHHHHHHHHc-CCcEEEEE----
Confidence 46888888888887776555433 245555553310 00 1233455555543 55555544
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
+..+..+..+.+. .++|.|.+-.......+..-.+...+.++++++.. ++||.+-|||+. +++.++. +.|||
T Consensus 120 ~p~t~~e~~~~~~-~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~-~aGad 196 (230)
T 1tqj_A 120 NPSTPLDFLEYVL-PVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVL-EAGAN 196 (230)
T ss_dssp CTTCCGGGGTTTG-GGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHH-HHTCC
T ss_pred eCCCcHHHHHHHH-hcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHH-HcCCC
Confidence 2223333333333 37999876333211111011223468888888876 899999999997 8899888 78999
Q ss_pred EEEeccccccCcc
Q psy7343 358 GVMTAEGNLYNPA 370 (487)
Q Consensus 358 ~VmiGRa~l~~P~ 370 (487)
++.+|++++..++
T Consensus 197 ~vvvGSai~~a~d 209 (230)
T 1tqj_A 197 AIVAGSAVFNAPN 209 (230)
T ss_dssp EEEESHHHHTSSC
T ss_pred EEEECHHHHCCCC
Confidence 9999999887655
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00014 Score=75.52 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccc-cCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHH
Q psy7343 213 NDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYL-QDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 213 ~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l-~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~ 288 (487)
.+++++.+.++. +++.+..+.++.|++.. +..|... ..+++...+.++++|+++ ++++.+...-+++..+..
T Consensus 143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~----~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~ 218 (412)
T 4e4u_A 143 DDPDLAAECAAENVKLGFTAVKFDPAGPYT----AYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAI 218 (412)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEECCSCCCB----TTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCc----cccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 478888776654 44559999999887532 1112111 123566677888898887 577877665577888889
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++++.+++.|++.|-- + . ...+++..+++++.+++||++.+.+.+..++.++++...+|.|++-
T Consensus 219 ~~~~~L~~~~i~~iEe--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d 282 (412)
T 4e4u_A 219 RLAKRLEKYDPLWFEE--------P-V-PPGQEEAIAQVAKHTSIPIATGERLTTKYEFHKLLQAGGASILQLN 282 (412)
T ss_dssp HHHHHHGGGCCSEEEC--------C-S-CSSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred HHHHHhhhcCCcEEEC--------C-C-ChhhHHHHHHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999998852 1 1 2347899999999999999999999999999999976778988653
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00031 Score=71.71 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=99.1
Q ss_pred CeeeeeccCCHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc
Q psy7343 205 PLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY 281 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~ 281 (487)
|+...+...+++++.+.++. +++.+..+.+..|+ +++.-.+.++++++++ ++++.+...-+
T Consensus 131 ~~~~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~----------------~~~~d~~~v~avR~~~g~~~~l~vDaN~~ 194 (368)
T 3q45_A 131 QTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGG----------------SKELDVERIRMIREAAGDSITLRIDANQG 194 (368)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCeEEEEecC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 44445555688888776654 44557777776654 2444556777888877 56777766556
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++..+..++++.+++.|++.|- | + . ...+++..+++++.+++||.+.+.+.+..++.++++...+|.|++
T Consensus 195 ~~~~~A~~~~~~l~~~~i~~iE-------q-P-~-~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~ 264 (368)
T 3q45_A 195 WSVETAIETLTLLEPYNIQHCE-------E-P-V-SRNLYTALPKIRQACRIPIMADESCCNSFDAERLIQIQACDSFNL 264 (368)
T ss_dssp BCHHHHHHHHHHHGGGCCSCEE-------C-C-B-CGGGGGGHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred CChHHHHHHHHHHhhcCCCEEE-------C-C-C-ChhHHHHHHHHHhhCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEe
Confidence 7878888999999999998884 1 1 1 223678889999999999999999999999999997778999986
Q ss_pred cc
Q psy7343 362 AE 363 (487)
Q Consensus 362 GR 363 (487)
--
T Consensus 265 k~ 266 (368)
T 3q45_A 265 KL 266 (368)
T ss_dssp CT
T ss_pred ch
Confidence 43
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=5.7e-05 Score=80.03 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=67.9
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC-------CCCCCCCCCH---HHHHHHH
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ-------RGMNTGLASW---EHITAVR 328 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~-------~g~~~g~~~~---~~i~~i~ 328 (487)
..+.++.+++..++||++|. +.+. +.++.+. |+|+|.+ |..... .++ |.+.. ..+.++.
T Consensus 256 ~L~~I~~l~~~~~vpvi~k~-----v~~~-~~a~~l~--G~d~v~v-g~g~g~~~~~r~~~~~--g~~~~~~l~~~~~~~ 324 (486)
T 2cu0_A 256 AIKSMKEMRQKVDADFIVGN-----IANP-KAVDDLT--FADAVKV-GIGPGSICTTRIVAGV--GVPQITAVAMVADRA 324 (486)
T ss_dssp HHHHHHHHHHTCCSEEEEEE-----ECCH-HHHTTCT--TSSEEEE-CSSCSTTBCHHHHTCC--CCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCCccccCC-----cCCH-HHHHHhh--CCCeEEE-eeeeccceeeeEEeec--CcchHHHHHHHHHHH
Confidence 34445667777789999873 3333 3344444 9999999 643221 111 22222 3344555
Q ss_pred hhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 329 ~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+..++|||+.|||.+..|+.+++ ..|||+||+|+.++..
T Consensus 325 ~~~~vpVia~GGi~~~~di~kal-alGA~~v~~g~~~~~~ 363 (486)
T 2cu0_A 325 QEYGLYVIADGGIRYSGDIVKAI-AAGADAVMLGNLLAGT 363 (486)
T ss_dssp HHHTCEEEEESCCCSHHHHHHHH-HTTCSEEEESTTTTTB
T ss_pred HHcCCcEEecCCCCCHHHHHHHH-HcCCCceeeChhhhcC
Confidence 55689999999999999999999 6999999999998864
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00032 Score=71.63 Aligned_cols=135 Identities=14% Similarity=0.182 Sum_probs=100.3
Q ss_pred CCeeeeeccCCH-HHHHHHHHhhC-CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 204 RPLIIQFCGNDS-KNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 204 ~Pv~Vqi~g~d~-~~~~~aa~~~~-~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
.|+...+...++ +.+.++++.++ ..+..+.+..|+ .+++.-.+.++++++.+ ++++.+...
T Consensus 132 v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~---------------~~~~~d~~~v~avR~~~g~~~~l~vDan 196 (370)
T 1chr_A 132 IPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGF---------------RSPQDDLIHMEALSNSLGSKAYLRVDVN 196 (370)
T ss_dssp EEBEEEECSSSHHHHHHHHHHHHHTTCCCEEEEECSS---------------SCSHHHHHHHHHHHHHSSTTCCEEEECT
T ss_pred eeEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEecCC---------------CCHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 455444443344 45566666666 446666666554 13555567788888887 478888877
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+|+..+..++++.+++.|++.|- | + . ...+++..+++++.+++||.+.+.+.+..++.++++..++|.|
T Consensus 197 ~~~~~~~a~~~~~~l~~~~i~~iE-------q-P-~-~~~~~~~~~~l~~~~~iPia~dE~~~~~~~~~~~~~~~~~d~v 266 (370)
T 1chr_A 197 QAWDEQVASVYIPELEALGVELIE-------Q-P-V-GRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVF 266 (370)
T ss_dssp TCCCTTHHHHHTHHHHTTTEEEEE-------C-C-S-CTTCHHHHHHHHHHSCSEEEESSSCCSHHHHHHHHTTTSCSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEE-------C-C-C-CcccHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence 788888999999999999988774 2 1 2 2357889999999999999999999999999999976779999
Q ss_pred Eecc
Q psy7343 360 MTAE 363 (487)
Q Consensus 360 miGR 363 (487)
++--
T Consensus 267 ~~k~ 270 (370)
T 1chr_A 267 SLKL 270 (370)
T ss_dssp EECT
T ss_pred EECc
Confidence 8753
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00011 Score=69.84 Aligned_cols=178 Identities=15% Similarity=0.085 Sum_probs=100.0
Q ss_pred eEEecCCCCCCHHHHHHHH---HcCCCe--EEccceec-cccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccc
Q psy7343 81 FILAPMVDASELPWRLLSR---RYGSHL--CYTPMVSA-HQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILA 154 (487)
Q Consensus 81 ~~LAPMag~td~pFR~l~~---~~Gadl--~~TEMi~a-~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lA 154 (487)
.+|.|+ .|+.+||.+|+ +||++. ++++|+.. ...+. . .+.... .+.|+.+|+.. .
T Consensus 11 t~l~p~--~t~~~i~~l~~~a~~~g~~~v~v~~~~v~~~~~~l~-~---v~v~~v--~~~P~g~~~~~------~----- 71 (225)
T 1mzh_A 11 AALKPH--LSEKEIEEFVLKSEELGIYAVCVNPYHVKLASSIAK-K---VKVCCV--IGFPLGLNKTS------V----- 71 (225)
T ss_dssp EECCTT--CCHHHHHHHHHHHHHTTCSEEEECGGGHHHHHHHCS-S---SEEEEE--ESTTTCCSCHH------H-----
T ss_pred cccCCC--CCHHHHHHHHHHHHHhCCeEEEECHHHHHHHHHHhc-C---CceeeE--ecCCCCccchh------h-----
Confidence 457888 68999999999 799987 66777654 33322 0 000000 01233222100 0
Q ss_pred cccCCCchHHHHHHHHhCCccceecc-ccchhhh-cChhHHHHHHh--cCCCCCCeeeee---c-cCCHHHHHHHHHhhC
Q psy7343 155 PMVDASELPWRLLSRRYGSHLCYTPM-VSAHQFI-ADKKLRQEILM--STPEDRPLIIQF---C-GNDSKNLTEAAKLAE 226 (487)
Q Consensus 155 pma~~td~~fr~i~~~~Ga~l~~t~~-v~~~~Ll-~~~~~~~~~l~--~~~~~~Pv~Vqi---~-g~d~~~~~~aa~~~~ 226 (487)
....-..+.+.|++..- + ++-..+. .+.+...+.++ ....+ |+++|+ . +.+.++..++++.++
T Consensus 72 ------k~~~~~~A~~~Gad~Id--~viN~g~~~~~~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~ 142 (225)
T 1mzh_A 72 ------KVKEAVEAVRDGAQELD--IVWNLSAFKSEKYDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICI 142 (225)
T ss_dssp ------HHHHHHHHHHTTCSEEE--EECCHHHHHTTCHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHcCCCEEE--EEecHHHHhcCChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHH
Confidence 00001223346664422 2 1211121 12233333332 11223 899998 4 457778889999888
Q ss_pred Cc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 227 PH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 227 ~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
++ .|+|..|.|- . .|+ .+++.+..+.+.+. .++||++.+ ++.+..++.++++ +|+|.|-+
T Consensus 143 eaGad~I~tstg~-~-------~gg---a~~~~i~~v~~~v~--~~ipVia~G----GI~t~~da~~~l~-aGA~~iG~ 203 (225)
T 1mzh_A 143 EAGADFIKTSTGF-A-------PRG---TTLEEVRLIKSSAK--GRIKVKASG----GIRDLETAISMIE-AGADRIGT 203 (225)
T ss_dssp HHTCSEEECCCSC-S-------SSC---CCHHHHHHHHHHHT--TSSEEEEES----SCCSHHHHHHHHH-TTCSEEEE
T ss_pred HhCCCEEEECCCC-C-------CCC---CCHHHHHHHHHHhC--CCCcEEEEC----CCCCHHHHHHHHH-hCchHHHH
Confidence 87 7888766543 0 121 46777666554432 268999997 7888888888886 89996644
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00033 Score=70.67 Aligned_cols=188 Identities=12% Similarity=0.082 Sum_probs=96.4
Q ss_pred CCceEEecCCCCCCHHHHH-HHHHcCCCeEEccceeccccccCcHHHHHHhhhC-CCCCceeeeeccccCCCCCcccccc
Q psy7343 78 SPRFILAPMVDASELPWRL-LSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST-PEDRPLIIQRTIFPRLGSPRFILAP 155 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~-l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~-~~e~p~~vQl~~~~~~g~~~~~lAp 155 (487)
+.|+++|||+++|+..|+. +++..|.++++++|... ...++... ...-|+.+|+ +..+..
T Consensus 46 ~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~~---------~~~~i~~~~~~g~~v~v~~------g~~~~~--- 107 (336)
T 1ypf_A 46 KLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEK---------RISFIRDMQSRGLIASISV------GVKEDE--- 107 (336)
T ss_dssp SSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGG---------HHHHHHHHHHTTCCCEEEE------CCSHHH---
T ss_pred cCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCHH---------HHHHHHHHHhcCCeEEEeC------CCCHHH---
Confidence 5689999999999999965 57777889998887532 11111111 1233677774 211110
Q ss_pred ccCCCchHHHHHHHHhC--CccceeccccchhhhcChhHHHHHHhc--CCCCCCeeeeeccCCHHHHHHHHHhhCCc-Cc
Q psy7343 156 MVDASELPWRLLSRRYG--SHLCYTPMVSAHQFIADKKLRQEILMS--TPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CD 230 (487)
Q Consensus 156 ma~~td~~fr~i~~~~G--a~l~~t~~v~~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d 230 (487)
........+.| ++..--.+ +. -++....+.++. ...+.|++++=...++ +.|+.++++ +|
T Consensus 108 ------~~~a~~~~~~g~~~~~i~i~~--~~---G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~----e~A~~a~~aGad 172 (336)
T 1ypf_A 108 ------YEFVQQLAAEHLTPEYITIDI--AH---GHSNAVINMIQHIKKHLPESFVIAGNVGTP----EAVRELENAGAD 172 (336)
T ss_dssp ------HHHHHHHHHTTCCCSEEEEEC--SS---CCSHHHHHHHHHHHHHCTTSEEEEEEECSH----HHHHHHHHHTCS
T ss_pred ------HHHHHHHHhcCCCCCEEEEEC--CC---CCcHHHHHHHHHHHHhCCCCEEEECCcCCH----HHHHHHHHcCCC
Confidence 01112233455 44321111 11 123333333321 1112233333112333 344455454 78
Q ss_pred EEEee--cCCCcceeec-cCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 231 GIDIN--IGCPQMVAKR-GHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 231 ~IdiN--~GcP~~i~~~-gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
+|.+. .|- +..+.. ...| ...| ..+.+..+++.+++||++.+ ++.+..|+++.+. .|||+|++ ||
T Consensus 173 ~Ivvs~hgG~-~~~~~~~~~~g---~~g~--~~~~l~~v~~~~~ipVIa~G----GI~~g~Dv~kala-lGAdaV~i-Gr 240 (336)
T 1ypf_A 173 ATKVGIGPGK-VCITKIKTGFG---TGGW--QLAALRWCAKAASKPIIADG----GIRTNGDVAKSIR-FGATMVMI-GS 240 (336)
T ss_dssp EEEECSSCST-TCHHHHHHSCS---STTC--HHHHHHHHHHTCSSCEEEES----CCCSTHHHHHHHH-TTCSEEEE-SG
T ss_pred EEEEecCCCc-eeecccccCcC---Cchh--HHHHHHHHHHHcCCcEEEeC----CCCCHHHHHHHHH-cCCCEEEe-Ch
Confidence 88772 111 100000 0000 0101 12344445666799999997 7888899998886 79999999 88
Q ss_pred ccC
Q psy7343 308 TVD 310 (487)
Q Consensus 308 t~~ 310 (487)
...
T Consensus 241 ~~l 243 (336)
T 1ypf_A 241 LFA 243 (336)
T ss_dssp GGT
T ss_pred hhh
Confidence 543
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=97.69 E-value=6.9e-05 Score=72.88 Aligned_cols=163 Identities=18% Similarity=0.206 Sum_probs=92.9
Q ss_pred HHHhcCCCCCCeeeeeccCCHH-HHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCC---hHHHHHHHHHHhhh
Q psy7343 195 EILMSTPEDRPLIIQFCGNDSK-NLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDD---WPLLTNLVSSLRQA 269 (487)
Q Consensus 195 ~~l~~~~~~~Pv~Vqi~g~d~~-~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d---~~~i~eiv~~v~~~ 269 (487)
+++.... +.||..|+.+.||- .+....+.+++. +.++ +|. |..-...|.++..|..+ .+...++++..++.
T Consensus 87 evlp~v~-~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~--ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~ 162 (286)
T 2p10_A 87 EVLPVVR-HTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNF--PTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKL 162 (286)
T ss_dssp HHGGGCS-SSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EEC--SCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred hhhccCC-CCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EEC--CCcccccchhhhhHhhcCCCHHHHHHHHHHHHHC
Confidence 5554433 78999998876663 333344556565 8899 885 32223345555555333 44455555544432
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc-ccCCCCCCCCCCC----HHHHHHHHhhC-----CCcEEE-c
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR-TVDQRGMNTGLAS----WEHITAVRKAL-----TIPVIA-N 338 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR-t~~~~g~~~g~~~----~~~i~~i~~~~-----~iPVi~-n 338 (487)
++--++-. ...+-++.+.++|+|.|.+|.- |....=+...... -+.+.++.+.+ ++.|+. .
T Consensus 163 -gL~Ti~~v-------~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~g 234 (286)
T 2p10_A 163 -DLLTTPYV-------FSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHG 234 (286)
T ss_dssp -TCEECCEE-------CSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEES
T ss_pred -CCeEEEec-------CCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 33222221 2244455677899999999964 3221100111112 23444443332 555554 4
Q ss_pred CCCCCHHHHHHHHHhc-CCcEEEeccccccCc
Q psy7343 339 GNIQCLADVEACLAQT-GVAGVMTAEGNLYNP 369 (487)
Q Consensus 339 GgI~s~~da~~~l~~~-Gad~VmiGRa~l~~P 369 (487)
|+|.+++|++.+++.+ |++|+..+.++..=|
T Consensus 235 GpIstpeDv~~~l~~t~G~~G~~gASsier~p 266 (286)
T 2p10_A 235 GPIANPEDARFILDSCQGCHGFYGASSMERLP 266 (286)
T ss_dssp TTCCSHHHHHHHHHHCTTCCEEEESHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCCCccEEEeehhhhcCC
Confidence 5999999999999543 799999999876655
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.3e-05 Score=92.47 Aligned_cols=190 Identities=15% Similarity=0.157 Sum_probs=110.7
Q ss_pred HcCCC---eEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCcc-
Q psy7343 100 RYGSH---LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHL- 175 (487)
Q Consensus 100 ~~Gad---l~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l- 175 (487)
++|++ +.++||++..++..-.+...+..... .+.|+++|+.. +..+.-.+.+ .......|++.
T Consensus 599 ~~~~~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~i~~----g~~~~~~~~~--------a~~~~~~g~d~i 665 (1025)
T 1gte_A 599 MYGPGQSSFLNIELISEKTAAYWCQSVTELKADF-PDNIVIASIMC----SYNKNDWMEL--------SRKAEASGADAL 665 (1025)
T ss_dssp CCSSCCSCEEECCCSCSSCHHHHHHHHHHHHHHC-TTSEEEEEECC----CSCHHHHHHH--------HHHHHHTTCSEE
T ss_pred ccCCchhheeeeccccchhHHHHHHHHHHHHhcC-CCCCeEEEecC----CCCHHHHHHH--------HHHHHhcCCCEE
Confidence 36654 89999999888744322222222222 35688887621 1111111111 01112234322
Q ss_pred -----ceeccc---cchhhhcChhHHHHHHhc--CCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEe-ecC------
Q psy7343 176 -----CYTPMV---SAHQFIADKKLRQEILMS--TPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDI-NIG------ 237 (487)
Q Consensus 176 -----~~t~~v---~~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~Idi-N~G------ 237 (487)
||..+. .|.++.++++...++++. ...+.||+||+.. +.+++.+.++.+++. +|+|.+ |-.
T Consensus 666 ein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~-~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~ 744 (1025)
T 1gte_A 666 ELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTP-NVTDIVSIARAAKEGGADGVTATNTVSGLMGL 744 (1025)
T ss_dssp EEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECS-CSSCHHHHHHHHHHHTCSEEEECCCEEECCCB
T ss_pred EEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeCC-ChHHHHHHHHHHHHcCCCEEEEeccccccccc
Confidence 443322 256677888888777752 2236899999985 333566777777665 788887 210
Q ss_pred ------CCcceeeccCcc--c-cccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 238 ------CPQMVAKRGHYG--A-YLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 238 ------cP~~i~~~gr~G--~-~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
-|. +..|++.. + .....+....+++..+++.+ ++||++.+ ++.+..++.+.+. +|+|+|+| ||
T Consensus 745 ~~~~~~~~~-~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~G----GI~s~~da~~~l~-~Ga~~v~v-g~ 817 (1025)
T 1gte_A 745 KADGTPWPA-VGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATG----GIDSAESGLQFLH-SGASVLQV-CS 817 (1025)
T ss_dssp CTTSCBSSC-BTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEES----SCCSHHHHHHHHH-TTCSEEEE-SH
T ss_pred ccccccccc-ccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEec----CcCCHHHHHHHHH-cCCCEEEE-ee
Confidence 110 00133211 1 12334555567778888888 89999998 8889999999887 89999999 88
Q ss_pred ccC
Q psy7343 308 TVD 310 (487)
Q Consensus 308 t~~ 310 (487)
...
T Consensus 818 ~~l 820 (1025)
T 1gte_A 818 AVQ 820 (1025)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00012 Score=70.58 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=60.4
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccC-CCCCCCCCCCHHHHHHHHhh--CCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVD-QRGMNTGLASWEHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~-~~g~~~g~~~~~~i~~i~~~--~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
..+..+ +....+.|+|+|.+...... .+... .+..++.++++++. .++||++-||| +.+++.+++ ..|+|+|.
T Consensus 142 ~ht~~E-a~~A~~~GaDyI~vgpvf~T~tK~~~-~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~-~aGa~gva 217 (243)
T 3o63_A 142 THDPDQ-VAAAAAGDADYFCVGPCWPTPTKPGR-AAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVL-DAGARRIV 217 (243)
T ss_dssp ECSHHH-HHHHHHSSCSEEEECCSSCCCC------CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHH-HTTCCCEE
T ss_pred CCCHHH-HHHHhhCCCCEEEEcCccCCCCCCCc-chhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHH-HcCCCEEE
Confidence 335555 45566789999999332111 11111 23468999999887 58999999999 899999999 79999999
Q ss_pred eccccccCccc
Q psy7343 361 TAEGNLYNPAL 371 (487)
Q Consensus 361 iGRa~l~~P~l 371 (487)
+|++++..++.
T Consensus 218 v~sai~~a~dp 228 (243)
T 3o63_A 218 VVRAITSADDP 228 (243)
T ss_dssp ESHHHHTCSSH
T ss_pred EeHHHhCCCCH
Confidence 99999876543
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00047 Score=70.30 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=104.3
Q ss_pred CCceEEecCCC-CCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCC-CCccc--
Q psy7343 78 SPRFILAPMVD-ASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLG-SPRFI-- 152 (487)
Q Consensus 78 ~~~~~LAPMag-~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g-~~~~~-- 152 (487)
+.++++|||+| +|+..|+..+.+.|+ +++.+.|++.+.+...-++..... +.|+.+++....... +...+
T Consensus 10 ~~Pii~apMaggvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~~-----~~p~gVnl~~~~~~~~~~~~~~~ 84 (369)
T 3bw2_A 10 PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGLT-----GRPFGVNVFMPQPELAESGAVEV 84 (369)
T ss_dssp SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHHHHHC-----CSCEEEEEECCCCCC---CHHHH
T ss_pred cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHhC-----CCCeEEEEecCCCCcccHHHHHH
Confidence 55799999995 999999999999987 888899998887744333333221 368899864321100 00000
Q ss_pred ----c------------ccccCCCch---HHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccC
Q psy7343 153 ----L------------APMVDASEL---PWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGN 213 (487)
Q Consensus 153 ----l------------Apma~~td~---~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~ 213 (487)
+ .|.. ..+. ..-.+..+.|++.....+.. ...+....+.. .+.++++++.
T Consensus 85 ~~~~l~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~~V~~~~g~-----~~~~~i~~~~~---~g~~v~~~v~-- 153 (369)
T 3bw2_A 85 YAHQLAGEAAWYETELGDPDG-GRDDGYDAKLAVLLDDPVPVVSFHFGV-----PDREVIARLRR---AGTLTLVTAT-- 153 (369)
T ss_dssp HHHHTHHHHHHTTCCCCCSCS-CSSTTHHHHHHHHHHSCCSEEEEESSC-----CCHHHHHHHHH---TTCEEEEEES--
T ss_pred HHHHHHHHHHHcCCCcCcccc-cccccHHHHHHHHHhcCCCEEEEeCCC-----CcHHHHHHHHH---CCCeEEEECC--
Confidence 0 0000 0011 11234445565543322211 01122222221 2467777653
Q ss_pred CHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccc---------cCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 214 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYL---------QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 214 d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l---------~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
+.++ ++.+++ ..|.|-++..- . -|..|... ...++. ++.+++.+++||++.+ .
T Consensus 154 t~~~----a~~a~~~GaD~i~v~g~~-~----GGh~g~~~~~~~~~~~~~~~~~~----l~~i~~~~~iPViaaG----G 216 (369)
T 3bw2_A 154 TPEE----ARAVEAAGADAVIAQGVE-A----GGHQGTHRDSSEDDGAGIGLLSL----LAQVREAVDIPVVAAG----G 216 (369)
T ss_dssp SHHH----HHHHHHTTCSEEEEECTT-C----SEECCCSSCCGGGTTCCCCHHHH----HHHHHHHCSSCEEEES----S
T ss_pred CHHH----HHHHHHcCCCEEEEeCCC-c----CCcCCCcccccccccccccHHHH----HHHHHHhcCceEEEEC----C
Confidence 3332 223333 37888774210 0 00001110 111444 4445666789999998 4
Q ss_pred cccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
+.+..++.+.+. .|+|+|.+ ||.-
T Consensus 217 I~~~~~~~~~l~-~GAd~V~v-Gs~~ 240 (369)
T 3bw2_A 217 IMRGGQIAAVLA-AGADAAQL-GTAF 240 (369)
T ss_dssp CCSHHHHHHHHH-TTCSEEEE-SHHH
T ss_pred CCCHHHHHHHHH-cCCCEEEE-ChHH
Confidence 545666666655 89999999 7743
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0014 Score=60.92 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=81.6
Q ss_pred CCCeeeeeccCC-HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 203 DRPLIIQFCGND-SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 203 ~~Pv~Vqi~g~d-~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
+.|+.+-+...| ++.+.+.+..+ .+|+|-+ |...+ .+.+.++++.+++. +.++.+-+ .
T Consensus 53 ~~~i~~~l~~~di~~~~~~~a~~~--Gad~v~v----------h~~~~------~~~~~~~~~~~~~~-g~~~gv~~--~ 111 (207)
T 3ajx_A 53 DKIVFADMKTMDAGELEADIAFKA--GADLVTV----------LGSAD------DSTIAGAVKAAQAH-NKGVVVDL--I 111 (207)
T ss_dssp TSEEEEEEEECSCHHHHHHHHHHT--TCSEEEE----------ETTSC------HHHHHHHHHHHHHH-TCEEEEEC--T
T ss_pred CCeEEEEEEecCccHHHHHHHHhC--CCCEEEE----------eccCC------hHHHHHHHHHHHHc-CCceEEEE--e
Confidence 567776444346 66655433322 2444444 43211 23445555555543 55553322 1
Q ss_pred cccccHHHHHHHHHHcCCcEEEE-EccccCCCCCCCCCCCH-HHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAV-HGRTVDQRGMNTGLASW-EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~V-hgRt~~~~g~~~g~~~~-~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+..+..+.++.+++.|+|.|.+ .+.+... .|.... +.++++++. ++|+++.|||+ ++++.+++ +.|||+|
T Consensus 112 -s~~~p~~~~~~~~~~g~d~v~~~~~~~~~~----~g~~~~~~~i~~~~~~-~~pi~v~GGI~-~~~~~~~~-~aGad~v 183 (207)
T 3ajx_A 112 -GIEDKATRAQEVRALGAKFVEMHAGLDEQA----KPGFDLNGLLAAGEKA-RVPFSVAGGVK-VATIPAVQ-KAGAEVA 183 (207)
T ss_dssp -TCSSHHHHHHHHHHTTCSEEEEECCHHHHT----STTCCTHHHHHHHHHH-TSCEEEESSCC-GGGHHHHH-HTTCSEE
T ss_pred -cCCChHHHHHHHHHhCCCEEEEEecccccc----cCCCchHHHHHHhhCC-CCCEEEECCcC-HHHHHHHH-HcCCCEE
Confidence 2234455556667789999944 3443221 121122 455555443 79999999998 78888888 7899999
Q ss_pred EeccccccCcc
Q psy7343 360 MTAEGNLYNPA 370 (487)
Q Consensus 360 miGRa~l~~P~ 370 (487)
.+||+++..++
T Consensus 184 vvGsaI~~~~d 194 (207)
T 3ajx_A 184 VAGGAIYGAAD 194 (207)
T ss_dssp EESHHHHTSSS
T ss_pred EEeeeccCCCC
Confidence 99999887554
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00024 Score=73.95 Aligned_cols=150 Identities=13% Similarity=0.168 Sum_probs=105.1
Q ss_pred CCCeeeeeccCCHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccC------cc---ccc--------cCChHHHHHHHH
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGH------YG---AYL--------QDDWPLLTNLVS 264 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr------~G---~~l--------~~d~~~i~eiv~ 264 (487)
..|+..-+.+.+++++.+.++. +++.|..+-+..|.|......|. +. ... ..+.+...++++
T Consensus 138 ~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvG~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~ 217 (424)
T 3v3w_A 138 RILSYTHANGKDLDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPDVFA 217 (424)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCSCCTTCC-----CCSCCBSSCCEEEECHHHHHHHHHHHHH
T ss_pred ceeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCccccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 4455444556788888876664 45558888888876421000000 00 000 011355677888
Q ss_pred HHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCC
Q psy7343 265 SLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQ 342 (487)
Q Consensus 265 ~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~ 342 (487)
++|+++ ++++.+...-+++..+..++++.+++.|++.|-= + . ...+++..+++++.+++||++.+.+.
T Consensus 218 avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~ 287 (424)
T 3v3w_A 218 AVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWMED--------A-V-PAENQESFKLIRQHTTTPLAVGEVFN 287 (424)
T ss_dssp HHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC--------C-S-CCSSTTHHHHHHHHCCSCEEECTTCC
T ss_pred HHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEC--------C-C-ChHhHHHHHHHHhhCCCCEEEccCcC
Confidence 899887 5788877666778888999999999999998842 1 1 22467889999999999999999999
Q ss_pred CHHHHHHHHHhcCCcEEEec
Q psy7343 343 CLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiG 362 (487)
+..++.++++...+|.|++-
T Consensus 288 ~~~~~~~~i~~ga~d~v~~k 307 (424)
T 3v3w_A 288 SIHDCRELIQNQWIDYIRTT 307 (424)
T ss_dssp SGGGTHHHHHTTCCSEECCC
T ss_pred CHHHHHHHHHcCCCCeEeec
Confidence 99999999976778988754
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00023 Score=68.61 Aligned_cols=146 Identities=13% Similarity=0.124 Sum_probs=95.8
Q ss_pred CeeeeeccCCHHHHHHHHHhhCCc-Cc--EEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeec
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLAEPH-CD--GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRI 280 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~~~~-~d--~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~ 280 (487)
.+...|...|..++.+..+.++++ .| .+|+--|.=..+.. +| + ++++++|+.. ++|+.+.+
T Consensus 29 ~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit---~G------~----~~v~~lr~~~p~~~ldvHL-- 93 (246)
T 3inp_A 29 QINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLT---FG------P----MVLKALRDYGITAGMDVHL-- 93 (246)
T ss_dssp EEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC---CC------H----HHHHHHHHHTCCSCEEEEE--
T ss_pred eeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchh---cC------H----HHHHHHHHhCCCCeEEEEE--
Confidence 466677766777777777777665 44 33443333001111 12 3 4555677777 78998887
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccC-------------------------------------------CCCCCCC
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVD-------------------------------------------QRGMNTG 317 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~-------------------------------------------~~g~~~g 317 (487)
-+.+..++.+.+.++|+|.|++|.-... -.+++.|
T Consensus 94 --mv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgG 171 (246)
T 3inp_A 94 --MVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGG 171 (246)
T ss_dssp --ECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--
T ss_pred --eeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCC
Confidence 4556677888889999999999873200 0122333
Q ss_pred C----CCHHHHHHHHhh-----CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 318 L----ASWEHITAVRKA-----LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 318 ~----~~~~~i~~i~~~-----~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
. ..++.++++++. .+++|.+.|||+ .+.+.++. +.|||.+.+|+++...+
T Consensus 172 Q~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~-~aGAD~~V~GSaIf~a~ 230 (246)
T 3inp_A 172 QKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIA-VCGVNAFVAGSAIFNSD 230 (246)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHH-TTTCCEEEESHHHHTSS
T ss_pred cccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHH-HcCCCEEEEehHHhCCC
Confidence 2 234677777764 358999999998 68888888 89999999999877654
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00017 Score=75.06 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=102.8
Q ss_pred CCCeeeeeccCCHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccc---c--------------CChHHHHHHHH
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYL---Q--------------DDWPLLTNLVS 264 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l---~--------------~d~~~i~eiv~ 264 (487)
..|+-.-+.+.+++++.+.++. +++.|..+-+..|.|......|...... . .+.+...++++
T Consensus 139 ~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~ 218 (425)
T 3vcn_A 139 GVTVYGHANGETIEDTIAEAVKYKAMGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKLFE 218 (425)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCSCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHHHH
T ss_pred eeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeecCccccccccccccccccCcccccccccccccchhHHHHHHHHHH
Confidence 3455444456788888876664 4556888888887632100000000000 0 00233456777
Q ss_pred HHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCC
Q psy7343 265 SLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQ 342 (487)
Q Consensus 265 ~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~ 342 (487)
++|+++ ++++.+...-+++..+..++++.+++.|++.|-- + . .+.+++..+++++.+++||++.+.+.
T Consensus 219 avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~ 288 (425)
T 3vcn_A 219 RAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLED--------S-V-PAENQAGFRLIRQHTTTPLAVGEIFA 288 (425)
T ss_dssp HHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEEC--------C-S-CCSSTTHHHHHHHHCCSCEEECTTCC
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------C-C-ChhhHHHHHHHHhcCCCCEEeCCCcC
Confidence 888877 5778776655678888899999999999998852 1 1 22467889999999999999999999
Q ss_pred CHHHHHHHHHhcCCcEEEec
Q psy7343 343 CLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiG 362 (487)
+.+++.++++...+|.|++-
T Consensus 289 ~~~~~~~~i~~~a~d~v~~k 308 (425)
T 3vcn_A 289 HVWDAKQLIEEQLIDYLRAT 308 (425)
T ss_dssp SGGGTHHHHHTTCCSEECCC
T ss_pred CHHHHHHHHHcCCCCeEecC
Confidence 99999999976778988754
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00015 Score=74.76 Aligned_cols=125 Identities=15% Similarity=0.162 Sum_probs=95.7
Q ss_pred cCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHH
Q psy7343 212 GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~ 288 (487)
|.+++++.+.++.+.+ .+..+.++.|+ +++.-.+.++++|+++ ++++.+...-+|+..+..
T Consensus 153 g~~~e~~~~~a~~~~~~G~~~iKlK~g~----------------~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~ 216 (392)
T 3ddm_A 153 GINPENPEDVVARKAAEGYRAFKLKVGF----------------DDARDVRNALHVRELLGAATPLMADANQGWDLPRAR 216 (392)
T ss_dssp EECSSSHHHHHHHHHHHTCCCEEEECSS----------------CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCC----------------CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence 4346677766665444 47777776653 3455567788888886 578888776678888889
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCC-HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLAS-WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~-~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++++.+++.|++.|- | + . .+.+ ++..+++++.+++||.+.+.+.+.+++.++++...+|.|++-
T Consensus 217 ~~~~~L~~~~i~~iE-------e-P-~-~~~d~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k 281 (392)
T 3ddm_A 217 QMAQRLGPAQLDWLE-------E-P-L-RADRPAAEWAELAQAAPMPLAGGENIAGVAAFETALAARSLRVMQPD 281 (392)
T ss_dssp HHHHHHGGGCCSEEE-------C-C-S-CTTSCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHhCCCEEE-------C-C-C-CccchHHHHHHHHHhcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999884 1 1 2 2346 899999999999999999999999999999976778887653
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00042 Score=65.97 Aligned_cols=176 Identities=7% Similarity=0.053 Sum_probs=103.0
Q ss_pred HHHHhCCccceeccccch---hhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCccee
Q psy7343 167 LSRRYGSHLCYTPMVSAH---QFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVA 243 (487)
Q Consensus 167 i~~~~Ga~l~~t~~v~~~---~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~ 243 (487)
...+.|++...-....+. .+...+...+.+-+..+ +.|+-+.+.-.||+.+.+. +.+ +|.|-+|...
T Consensus 26 ~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p-~~~~dvhLmv~dp~~~i~~---~~~-Ad~itvH~ea----- 95 (227)
T 1tqx_A 26 RMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTK-SIFFDVHLMVEYPEKYVPL---LKT-SNQLTFHFEA----- 95 (227)
T ss_dssp HHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCS-SCEEEEEEESSCGGGGGGG---CTT-SSEEEEEGGG-----
T ss_pred HHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCC-CCcEEEEEEEcCHHHHHHH---HHh-CCEEEEeecC-----
Confidence 344567765322222222 22233444444433322 5789999988888765422 112 4444444332
Q ss_pred eccCccccccCChHHHHHHHH---HHhhhccCcEEEEeecccccccHHHHHHHHHHcC-CcEEEEEccccCCCCCCCCCC
Q psy7343 244 KRGHYGAYLQDDWPLLTNLVS---SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG-CQLLAVHGRTVDQRGMNTGLA 319 (487)
Q Consensus 244 ~~gr~G~~l~~d~~~i~eiv~---~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G-~d~I~VhgRt~~~~g~~~g~~ 319 (487)
. .+.+.+.++ .+++. +..+.+-+ +..+..+..+.+.+.| +|.|.+.+....-.|..-.+.
T Consensus 96 -----~------~~~~~~~i~~~~~i~~~-G~k~gval----np~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~ 159 (227)
T 1tqx_A 96 -----L------NEDTERCIQLAKEIRDN-NLWCGISI----KPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHD 159 (227)
T ss_dssp -----G------TTCHHHHHHHHHHHHTT-TCEEEEEE----CTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGG
T ss_pred -----C------ccCHHHHHHHHHHHHHc-CCeEEEEe----CCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchH
Confidence 1 112334555 66653 66566555 3334455556666666 999977433211111011334
Q ss_pred CHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 320 SWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 320 ~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.++.++++++.. +++|.+.|||+ .+.+.++. +.|||.+.+|++++..++
T Consensus 160 ~l~ki~~lr~~~~~~~I~VdGGI~-~~ti~~~~-~aGAd~~V~GsaIf~~~d 209 (227)
T 1tqx_A 160 MMGKVSFLRKKYKNLNIQVDGGLN-IETTEISA-SHGANIIVAGTSIFNAED 209 (227)
T ss_dssp GHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHH-HHTCCEEEESHHHHTCSS
T ss_pred HHHHHHHHHHhccCCeEEEECCCC-HHHHHHHH-HcCCCEEEEeHHHhCCCC
Confidence 568888888877 88999999997 78899988 789999999999887554
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00014 Score=70.60 Aligned_cols=136 Identities=16% Similarity=0.162 Sum_probs=89.1
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.||.+|-+-.|+.+..+ +.. ..+|+|-|... .+ + +.+.++++..++ .++.+.+
T Consensus 105 v~lPvl~kdfI~d~~qi~~-a~~--~GAD~VlL~~~-------------~l--~-~~l~~l~~~a~~-lGl~~lv----- 159 (254)
T 1vc4_A 105 VDLPLLRKDFVVDPFMLEE-ARA--FGASAALLIVA-------------LL--G-ELTGAYLEEARR-LGLEALV----- 159 (254)
T ss_dssp CCSCEEEESCCCSHHHHHH-HHH--TTCSEEEEEHH-------------HH--G-GGHHHHHHHHHH-HTCEEEE-----
T ss_pred cCCCEEECCcCCCHHHHHH-HHH--cCCCEEEECcc-------------ch--H-HHHHHHHHHHHH-CCCeEEE-----
Confidence 4678887766556654433 221 22454444311 11 1 455666654443 3544433
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
+..+..+. +...+.|+|.|-++.|.-.. -..+++.+.++.+.+ ++|+++.|||.|++|+.++. . |+
T Consensus 160 -ev~~~~E~-~~a~~~gad~IGvn~~~l~~-----~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~-~-Ga 230 (254)
T 1vc4_A 160 -EVHTEREL-EIALEAGAEVLGINNRDLAT-----LHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALE-G-LF 230 (254)
T ss_dssp -EECSHHHH-HHHHHHTCSEEEEESBCTTT-----CCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTT-T-TC
T ss_pred -EECCHHHH-HHHHHcCCCEEEEccccCcC-----CCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHH-c-CC
Confidence 33355554 46667899999997775322 235667777777665 79999999999999999999 6 99
Q ss_pred cEEEeccccccCccc
Q psy7343 357 AGVMTAEGNLYNPAL 371 (487)
Q Consensus 357 d~VmiGRa~l~~P~l 371 (487)
|+|.||++++..++.
T Consensus 231 ~gvlVGsAl~~~~d~ 245 (254)
T 1vc4_A 231 DAVLIGTSLMRAPDL 245 (254)
T ss_dssp SEEEECHHHHTSSCH
T ss_pred CEEEEeHHHcCCCCH
Confidence 999999999988765
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00069 Score=65.40 Aligned_cols=138 Identities=10% Similarity=0.061 Sum_probs=97.6
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
..+.||..|=+.-++-+..+ ++ ....|+|=|++.+ -+.+.+.++++..++ .+..+.+-+
T Consensus 99 ~v~lPvLrKDfi~~~~qi~e-a~--~~GAD~ilLi~a~---------------l~~~~l~~l~~~a~~-lGl~~lvEv-- 157 (251)
T 1i4n_A 99 LTCRPILAKDFYIDTVQVKL-AS--SVGADAILIIARI---------------LTAEQIKEIYEAAEE-LGMDSLVEV-- 157 (251)
T ss_dssp TCCSCEEEECCCCSTHHHHH-HH--HTTCSEEEEEGGG---------------SCHHHHHHHHHHHHT-TTCEEEEEE--
T ss_pred hCCCCEEEeeCCCCHHHHHH-HH--HcCCCEEEEeccc---------------CCHHHHHHHHHHHHH-cCCeEEEEe--
Confidence 34789998866655554444 22 2235666555332 134667788877665 577777765
Q ss_pred ccccccHHHHHHHHHHc-CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 281 YQDVNKTVEYARMLERA-GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~-G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
.+..| ++...+. |++.|-|+.|.-.. ...+++...++.+.+ ++++|+-|||.|++|+.++. +. +|
T Consensus 158 ----~~~eE-~~~A~~l~g~~iIGinnr~l~t-----~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~-~~-a~ 225 (251)
T 1i4n_A 158 ----HSRED-LEKVFSVIRPKIIGINTRDLDT-----FEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLR-GK-VN 225 (251)
T ss_dssp ----CSHHH-HHHHHTTCCCSEEEEECBCTTT-----CCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHT-TT-CS
T ss_pred ----CCHHH-HHHHHhcCCCCEEEEeCccccc-----CCCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHH-Hh-CC
Confidence 23444 5566677 99999998874322 245677888888777 68999999999999999999 67 99
Q ss_pred EEEeccccccCccc
Q psy7343 358 GVMTAEGNLYNPAL 371 (487)
Q Consensus 358 ~VmiGRa~l~~P~l 371 (487)
+|.||.+++..++.
T Consensus 226 avLVG~aimr~~d~ 239 (251)
T 1i4n_A 226 AVLVGTSIMKAENP 239 (251)
T ss_dssp EEEECHHHHHCSSH
T ss_pred EEEEcHHHcCCcCH
Confidence 99999999987665
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00018 Score=67.64 Aligned_cols=152 Identities=11% Similarity=0.078 Sum_probs=82.5
Q ss_pred hhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh
Q psy7343 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269 (487)
Q Consensus 190 ~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~ 269 (487)
.+..+++.+.. +.|+.+-+.-+|++++.+.+..+ ..|+|.+| +..+ ..+. ++++.+++.
T Consensus 50 ~~~i~~i~~~~--~~~~~v~l~v~d~~~~i~~~~~~--gad~v~vh----------~~~~----~~~~---~~~~~~~~~ 108 (220)
T 2fli_A 50 ADVVASMRKHS--KLVFDCHLMVVDPERYVEAFAQA--GADIMTIH----------TEST----RHIH---GALQKIKAA 108 (220)
T ss_dssp HHHHHHHHTTC--CSEEEEEEESSSGGGGHHHHHHH--TCSEEEEE----------GGGC----SCHH---HHHHHHHHT
T ss_pred HHHHHHHHHhC--CCCEEEEEeecCHHHHHHHHHHc--CCCEEEEc----------cCcc----ccHH---HHHHHHHHc
Confidence 44444443322 45777776667765544433322 24444444 3211 1232 344444443
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEcCCCCCH
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-----TIPVIANGNIQCL 344 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-----~iPVi~nGgI~s~ 344 (487)
+..+.+-+ +..+..+..+.+. .++|.|.+-+......+...+...++.++++++.. ++||++.|||+ +
T Consensus 109 -g~~i~~~~----~~~t~~e~~~~~~-~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~ 181 (220)
T 2fli_A 109 -GMKAGVVI----NPGTPATALEPLL-DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-N 181 (220)
T ss_dssp -TSEEEEEE----CTTSCGGGGGGGT-TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-T
T ss_pred -CCcEEEEE----cCCCCHHHHHHHH-hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-H
Confidence 55555554 2222223333332 45898866332211111011112235566666654 79999999999 7
Q ss_pred HHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 345 ADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+++.+++ +.|+|+|.+||+++..++
T Consensus 182 ~~~~~~~-~~Gad~vvvGsai~~~~d 206 (220)
T 2fli_A 182 KTIRACY-EAGANVFVAGSYLFKASD 206 (220)
T ss_dssp TTHHHHH-HHTCCEEEESHHHHTSSC
T ss_pred HHHHHHH-HcCCCEEEEChHHhCCCC
Confidence 8898877 679999999999887654
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00037 Score=70.97 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHH
Q psy7343 213 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e 289 (487)
.+++++.+.++.+.+ .|+.|.++.| | ..+. ++++++++++ ++++.+...-+++.++ .+
T Consensus 140 ~~~~~~~~~a~~~~~~Gf~~vKik~~-~-------------~~~~----e~v~avr~~~g~~~~l~vDan~~~~~~~-~~ 200 (368)
T 1sjd_A 140 DTIPQLLDVVGGYLDEGYVRIKLKIE-P-------------GWDV----EPVRAVRERFGDDVLLQVDANTAYTLGD-AP 200 (368)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECB-T-------------TBSH----HHHHHHHHHHCTTSEEEEECTTCCCGGG-HH
T ss_pred CCHHHHHHHHHHHHHhCccEEEEecC-c-------------hhHH----HHHHHHHHhcCCCceEEEeccCCCCHHH-HH
Confidence 478888777765544 4888888753 1 1233 4555666665 4666665544677788 99
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+++.++++|++.|- + + . ...+++..+++++.+++||++.+.+.+.++++++++...+|.|++
T Consensus 201 ~~~~l~~~~i~~iE-------~-P-~-~~~~~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 262 (368)
T 1sjd_A 201 QLARLDPFGLLLIE-------Q-P-L-EEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNI 262 (368)
T ss_dssp HHHTTGGGCCSEEE-------C-C-S-CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHhcCCCeEe-------C-C-C-ChhhHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCEEEe
Confidence 99999999999764 1 1 2 235789999999999999999999999999999997777999987
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00067 Score=64.60 Aligned_cols=172 Identities=9% Similarity=0.098 Sum_probs=99.3
Q ss_pred HHHhCCccceeccccch---hhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceee
Q psy7343 168 SRRYGSHLCYTPMVSAH---QFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAK 244 (487)
Q Consensus 168 ~~~~Ga~l~~t~~v~~~---~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~ 244 (487)
..+.|++...-...-+. .+...++..+++-+....+.|+-+.+.-++++.+.+.+. ++ |+ ..++.
T Consensus 26 l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~---~a--------Ga-d~itv 93 (228)
T 3ovp_A 26 MLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMA---VA--------GA-NQYTF 93 (228)
T ss_dssp HHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHH---HH--------TC-SEEEE
T ss_pred HHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHH---Hc--------CC-CEEEE
Confidence 34567765433222111 122344444444322224678999998888887665432 23 33 34445
Q ss_pred ccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC----CCC
Q psy7343 245 RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG----LAS 320 (487)
Q Consensus 245 ~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g----~~~ 320 (487)
|.... . .+.+.++.+++. ++.+.+-+....+.+.. +.+.+ .+|.|.+..... ++.| +..
T Consensus 94 H~Ea~----~---~~~~~i~~i~~~-G~k~gval~p~t~~e~l----~~~l~-~~D~Vl~msv~p----Gf~Gq~f~~~~ 156 (228)
T 3ovp_A 94 HLEAT----E---NPGALIKDIREN-GMKVGLAIKPGTSVEYL----APWAN-QIDMALVMTVEP----GFGGQKFMEDM 156 (228)
T ss_dssp EGGGC----S---CHHHHHHHHHHT-TCEEEEEECTTSCGGGT----GGGGG-GCSEEEEESSCT----TTCSCCCCGGG
T ss_pred ccCCc----h---hHHHHHHHHHHc-CCCEEEEEcCCCCHHHH----HHHhc-cCCeEEEeeecC----CCCCcccCHHH
Confidence 54321 1 234556666654 66566555333222222 22222 389888744421 1222 234
Q ss_pred HHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 321 WEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 321 ~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
++.++++++.. ++++.+.|||+ .+.+.++. +.|||.+.+||++...++
T Consensus 157 l~ki~~lr~~~~~~~I~VdGGI~-~~t~~~~~-~aGAd~~VvGsaIf~a~d 205 (228)
T 3ovp_A 157 MPKVHWLRTQFPSLDIEVDGGVG-PDTVHKCA-EAGANMIVSGSAIMRSED 205 (228)
T ss_dssp HHHHHHHHHHCTTCEEEEESSCS-TTTHHHHH-HHTCCEEEESHHHHTCSC
T ss_pred HHHHHHHHHhcCCCCEEEeCCcC-HHHHHHHH-HcCCCEEEEeHHHhCCCC
Confidence 57788888876 68999999995 78999998 789999999999776543
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00042 Score=70.61 Aligned_cols=195 Identities=14% Similarity=0.147 Sum_probs=91.4
Q ss_pred CCceEEecCCCCCCHH------HHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcc
Q psy7343 78 SPRFILAPMVDASELP------WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRF 151 (487)
Q Consensus 78 ~~~~~LAPMag~td~p------FR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~ 151 (487)
+.|+++|||+|.++.+ |++.|+++|..+...+|..+-.- ....+....... .+.+++..+ +.
T Consensus 86 ~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~le~--~~~~~~~v~r~~-P~~~~iani------g~--- 153 (365)
T 3sr7_A 86 DFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTALKN--PDDTSYQVKKSR-PHLLLATNI------GL--- 153 (365)
T ss_dssp SSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC--------------------------CCEEEEE------ET---
T ss_pred cCceEeccccCCCcchhHHHHHHHHHHHHcCCCeecccccccccC--ccccceEehhhC-CCCcEEEEe------CC---
Confidence 6689999999999977 99999999999999998753211 000011011111 123333322 10
Q ss_pred ccccccCCCchHHHHHHHHhCCccceeccccchhhh-----cCh----hHHHHHHhcCCCCCCeeeeecc--CCHHHHHH
Q psy7343 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI-----ADK----KLRQEILMSTPEDRPLIIQFCG--NDSKNLTE 220 (487)
Q Consensus 152 ~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll-----~~~----~~~~~~l~~~~~~~Pv~Vqi~g--~d~~~~~~ 220 (487)
+.+...++......|++....-.-....+. .+. +.++++.+ ..+.||++|..+ .+++
T Consensus 154 ------~~~~e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~--~~~~PVivK~vg~g~s~e---- 221 (365)
T 3sr7_A 154 ------DKPYQAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAK--KLQLPFILKEVGFGMDVK---- 221 (365)
T ss_dssp ------TSCHHHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHH--HCCSCEEEEECSSCCCHH----
T ss_pred ------CCCHHHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHH--hhCCCEEEEECCCCCCHH----
Confidence 111113455555667765432111111111 111 11222222 236899999543 4443
Q ss_pred HHHhhCCc-CcEEEeecC-CCcc----eeeccCccccccCCh-----HHHHHHHHHHhhhc-cCcEEEEeecccccccHH
Q psy7343 221 AAKLAEPH-CDGIDINIG-CPQM----VAKRGHYGAYLQDDW-----PLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~G-cP~~----i~~~gr~G~~l~~d~-----~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~ 288 (487)
.|+.+.++ +|+|.+..+ -... ..+... .....+| +.+. .++... ++||++.+ ++.+..
T Consensus 222 ~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~--~~~~~~~g~pt~~~L~----~v~~~~~~ipvia~G----GI~~g~ 291 (365)
T 3sr7_A 222 TIQTAIDLGVKTVDISGRGGTSFAYIENRRGGN--RSYLNQWGQTTAQVLL----NAQPLMDKVEILASG----GIRHPL 291 (365)
T ss_dssp HHHHHHHHTCCEEECCCBC----------------CGGGTTCSCBHHHHHH----HHGGGTTTSEEEECS----SCCSHH
T ss_pred HHHHHHHcCCCEEEEeCCCCcccchhhcccccc--ccccccccccHHHHHH----HHHHhcCCCeEEEeC----CCCCHH
Confidence 34444454 788877421 1010 000000 0011232 2333 233222 68999997 788999
Q ss_pred HHHHHHHHcCCcEEEEEccc
Q psy7343 289 EYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt 308 (487)
|+++.+. .|||+|++ ||.
T Consensus 292 Dv~KaLa-lGAdaV~i-g~~ 309 (365)
T 3sr7_A 292 DIIKALV-LGAKAVGL-SRT 309 (365)
T ss_dssp HHHHHHH-HTCSEEEE-SHH
T ss_pred HHHHHHH-cCCCEEEE-CHH
Confidence 9999987 89999999 773
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00076 Score=69.37 Aligned_cols=134 Identities=14% Similarity=0.167 Sum_probs=99.1
Q ss_pred CCeeeeecc---CCHHHHHHHHH-hhCC---cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcE
Q psy7343 204 RPLIIQFCG---NDSKNLTEAAK-LAEP---HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPV 274 (487)
Q Consensus 204 ~Pv~Vqi~g---~d~~~~~~aa~-~~~~---~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV 274 (487)
.|+-..+.+ .+++++.+.++ .+++ .+..+.+..|.+ +++.-.+.++++++++ ++++
T Consensus 158 v~~y~s~g~~~~~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~---------------~~~~d~~~v~avR~a~G~~~~l 222 (390)
T 3ugv_A 158 VKAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRD---------------DPAVDIETAEAVWDAVGRDTAL 222 (390)
T ss_dssp EEEEECSCCCSSCHHHHHHHHHHHHHTTCTTCCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSEE
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHhhhCCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCEE
Confidence 444444444 56777766554 5666 677777766542 3455566777888876 5677
Q ss_pred EEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 275 ~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
.+...-+|+..+..++++.+++.|++.|- | + . ...+++..+++++.+++||.+.+.+.+..++.++++..
T Consensus 223 ~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~ 292 (390)
T 3ugv_A 223 MVDFNQGLDMAEAMHRTRQIDDLGLEWIE-------E-P-V-VYDNFDGYAQLRHDLKTPLMIGENFYGPREMHQALQAG 292 (390)
T ss_dssp EEECTTCCCHHHHHHHHHHHTTSCCSEEE-------C-C-S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCCEEE-------C-C-C-CcccHHHHHHHHHhcCCCEEeCCCcCCHHHHHHHHHcC
Confidence 77766677888888999999999998884 2 1 1 23478999999999999999999999999999999767
Q ss_pred CCcEEEec
Q psy7343 355 GVAGVMTA 362 (487)
Q Consensus 355 Gad~VmiG 362 (487)
.+|.|++-
T Consensus 293 a~d~v~ik 300 (390)
T 3ugv_A 293 ACDLVMPD 300 (390)
T ss_dssp CCSEECCB
T ss_pred CCCEEEeC
Confidence 78888643
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00017 Score=75.08 Aligned_cols=151 Identities=13% Similarity=0.085 Sum_probs=105.9
Q ss_pred CCCeeeeeccCCHHHHHHHHHh-hCCcCcEEEeecCCCcce-----eecc-Cccccc--cCChHHHHHHHHHHhhhc--c
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMV-----AKRG-HYGAYL--QDDWPLLTNLVSSLRQAV--Q 271 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i-----~~~g-r~G~~l--~~d~~~i~eiv~~v~~~~--~ 271 (487)
..|+...+.+.+++++.+.++. +++.|..|.+..|.+... ..++ ..|... ..+.+...++++++|+++ +
T Consensus 143 ~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d 222 (422)
T 3tji_A 143 AIPAYSHASGETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWK 222 (422)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred eEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCC
Confidence 3455444556788888776664 455689999988863110 0000 001111 011455677888899887 5
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l 351 (487)
+++.+...-+++..+..++++.+++.|++.|-= + . .+.+++..+++++.+++||++.+.+.+.+++.+++
T Consensus 223 ~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iEq--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~ll 292 (422)
T 3tji_A 223 LHILHDVHERLFPQQAVQLAKQLEPFQPYFIED--------I-L-PPQQSAWLEQVRQQSCVPLALGELFNNPAEWHDLI 292 (422)
T ss_dssp SEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------C-S-CGGGGGGHHHHHHHCCCCEEECTTCCSGGGTHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCeEEC--------C-C-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHH
Confidence 778877666778888999999999999998841 1 1 22367888999999999999999999999999999
Q ss_pred HhcCCcEEEecc
Q psy7343 352 AQTGVAGVMTAE 363 (487)
Q Consensus 352 ~~~Gad~VmiGR 363 (487)
+...+|.|++--
T Consensus 293 ~~ga~d~v~~k~ 304 (422)
T 3tji_A 293 VNRRIDFIRCHV 304 (422)
T ss_dssp HTTCCSEECCCG
T ss_pred hcCCCCEEecCc
Confidence 777789887643
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=75.39 Aligned_cols=121 Identities=13% Similarity=0.174 Sum_probs=79.4
Q ss_pred cchhhhcChhHHHHHHhc---C-------------------CCCCC-eeeeec-cCCHHHHHHHHHhhCCc-CcEEEeec
Q psy7343 182 SAHQFIADKKLRQEILMS---T-------------------PEDRP-LIIQFC-GNDSKNLTEAAKLAEPH-CDGIDINI 236 (487)
Q Consensus 182 ~~~~Ll~~~~~~~~~l~~---~-------------------~~~~P-v~Vqi~-g~d~~~~~~aa~~~~~~-~d~IdiN~ 236 (487)
.+..++++++.+.++++. . ....| |+|||. +.+.+++.++|+.++++ .|+|-+.-
T Consensus 225 ~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~N 304 (415)
T 3i65_A 225 PGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISN 304 (415)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECC
T ss_pred CCcccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 366778898888777641 1 13579 999999 45667889999998887 78886643
Q ss_pred CCCcceee---ccCccc-cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 237 GCPQMVAK---RGHYGA-YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 237 GcP~~i~~---~gr~G~-~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.-...... ....|+ .....+....+++..+++.+ ++||++.+ ++.+..++.+++. +|+|+|+| ||.
T Consensus 305 tt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~G----GI~s~eDa~e~l~-aGAd~VqI-gra 376 (415)
T 3i65_A 305 TTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASG----GIFSGLDALEKIE-AGASVCQL-YSC 376 (415)
T ss_dssp CBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECS----SCCSHHHHHHHHH-HTEEEEEE-SHH
T ss_pred CCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEEC----CCCCHHHHHHHHH-cCCCEEEE-cHH
Confidence 22111000 001111 12345666778888888888 79999997 8889999999887 89999999 875
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00066 Score=69.32 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=94.4
Q ss_pred CHHHHHHHHH-hhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHH
Q psy7343 214 DSKNLTEAAK-LAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 214 d~~~~~~aa~-~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e 289 (487)
+++++.+.++ .+++ .+..+.+..|++ +++.-.+.++++++.+ ++++.+...-+++..+..+
T Consensus 151 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~ 215 (372)
T 3tj4_A 151 TLEDLLAGSARAVEEDGFTRLKIKVGHD---------------DPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQR 215 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEECCCS---------------SHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHH
Confidence 7777766554 5566 688888877653 3445567788888887 5677777666777778888
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+++.+++.|++.|- | + . ...+++..+++++.+++||.+.+.+.+.+++.++++...+|.|++
T Consensus 216 ~~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~ 277 (372)
T 3tj4_A 216 FCAAAKDLDIYWFE-------E-P-L-WYDDVTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQP 277 (372)
T ss_dssp HHHHTTTSCEEEEE-------S-C-S-CTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred HHHHHhhcCCCEEE-------C-C-C-CchhHHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEe
Confidence 99999998887773 2 1 2 234789999999999999999999999999999997777888765
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00038 Score=71.65 Aligned_cols=137 Identities=6% Similarity=0.109 Sum_probs=101.5
Q ss_pred CCeeeeec----cCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEE-
Q psy7343 204 RPLIIQFC----GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVS- 275 (487)
Q Consensus 204 ~Pv~Vqi~----g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~- 275 (487)
.|+...+. ..+++.+.+.++.+ ++.+..+.++.|+ +++.-.+.++++++++ ++++.
T Consensus 128 v~~y~t~~~~~~~~~~e~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avR~a~g~~~~l~~ 191 (391)
T 3gd6_A 128 IKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGK----------------NLDADEEFLSRVKEEFGSRVRIKS 191 (391)
T ss_dssp EEBCEEECCCSSTTHHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHGGGCEEEE
T ss_pred EEeeEEecccccCCCHHHHHHHHHHHHHcCCCEEEEeeCC----------------CHHHHHHHHHHHHHHcCCCCcEEE
Confidence 45555555 55678877766644 4558888887765 2444566777788876 56777
Q ss_pred EEeecccccccHHHHHHHHHHcCC--cEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 276 CKIRIYQDVNKTVEYARMLERAGC--QLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 276 vKiR~~~d~~~~~e~a~~le~~G~--d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
+...-+++..+..++++.++++|+ +.|. | + . ...+++..+++++.+++|| .+.+.+.+++.++++.
T Consensus 192 vDan~~~~~~~A~~~~~~l~~~~i~~~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPI--dE~~~~~~~~~~~~~~ 259 (391)
T 3gd6_A 192 YDFSHLLNWKDAHRAIKRLTKYDLGLEMIE-------S-P-A-PRNDFDGLYQLRLKTDYPI--SEHVWSFKQQQEMIKK 259 (391)
T ss_dssp EECTTCSCHHHHHHHHHHHTTCCSSCCEEE-------C-C-S-CTTCHHHHHHHHHHCSSCE--EEECCCHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHHhcCCCcceec-------C-C-C-ChhhHHHHHHHHHHcCCCc--CCCCCCHHHHHHHHHc
Confidence 766556788888999999999999 7764 1 1 2 2347899999999999999 7899999999999977
Q ss_pred cCCcEEEeccccccC
Q psy7343 354 TGVAGVMTAEGNLYN 368 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~ 368 (487)
..+|.|++--+.++.
T Consensus 260 ~~~d~v~~k~~~~GG 274 (391)
T 3gd6_A 260 DAIDIFNISPVFIGG 274 (391)
T ss_dssp TCCSEEEECHHHHTS
T ss_pred CCCCEEEECchhcCC
Confidence 789999986554443
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.001 Score=68.28 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=98.8
Q ss_pred CCeeeeeccCCHHHHHHHHH-hhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 204 RPLIIQFCGNDSKNLTEAAK-LAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~-~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
.|+...+...+++++.+.++ .+++ .+..+.+..|.+ +++.-.+.++++++++ ++++.+...
T Consensus 157 v~~y~s~g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~---------------~~~~d~~~v~avR~a~G~~~~l~vDaN 221 (383)
T 3toy_A 157 IPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHG---------------DLATDEAMIKGLRALLGPDIALMLDFN 221 (383)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTSCCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred eEEeEecCCCCHHHHHHHHHHHHHccCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 45544443457888776554 5566 577777665541 3555566777888876 567777766
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+|+..+..++++.+++.|++.|- | + . ...+++..+++++.+++||.+.+.+.+..++.++++...+|.|
T Consensus 222 ~~~~~~~A~~~~~~l~~~~i~~iE-------e-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v 291 (383)
T 3toy_A 222 QSLDPAEATRRIARLADYDLTWIE-------E-P-V-PQENLSGHAAVRERSEIPIQAGENWWFPRGFAEAIAAGASDFI 291 (383)
T ss_dssp TCSCHHHHHHHHHHHGGGCCSEEE-------C-C-S-CTTCHHHHHHHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHHHhhCCCEEE-------C-C-C-CcchHHHHHHHHhhcCCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence 677888889999999999998874 2 1 1 2347899999999999999999999999999999977778888
Q ss_pred Ee
Q psy7343 360 MT 361 (487)
Q Consensus 360 mi 361 (487)
++
T Consensus 292 ~i 293 (383)
T 3toy_A 292 MP 293 (383)
T ss_dssp CC
T ss_pred Ee
Confidence 64
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0012 Score=67.69 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=98.9
Q ss_pred CCeeeeeccCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIY 281 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~ 281 (487)
.|+...+...+++...+.++ .+++.+..+.+..|. .+++.-.+.++++++.+ ++++.+...-+
T Consensus 138 v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~---------------~~~~~d~~~v~avR~a~~~~~l~vDan~~ 202 (385)
T 3i6e_A 138 IPLSCSIANPDFDADIALMERLRADGVGLIKLKTGF---------------RDHAFDIMRLELIARDFPEFRVRVDYNQG 202 (385)
T ss_dssp EEBEEEECCSSHHHHHHHHHHHHHHTCCEEEEECSS---------------SCHHHHHHHHHHHHHHCTTSEEEEECTTC
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 45555555456766655444 444457777666554 13444456677777776 56777776667
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
|+..+..++++.+++.|++.|- | + . .+.+++..+++++.+++||.+...+.+..++.++++...+|.|++
T Consensus 203 ~~~~~A~~~~~~L~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~ 272 (385)
T 3i6e_A 203 LEIDEAVPRVLDVAQFQPDFIE-------Q-P-V-RAHHFELMARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSI 272 (385)
T ss_dssp CCGGGHHHHHHHHHTTCCSCEE-------C-C-S-CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCEEE-------C-C-C-CcccHHHHHHHHHhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEe
Confidence 8888999999999999998874 2 1 2 234789999999999999999999999999999997778999986
Q ss_pred c
Q psy7343 362 A 362 (487)
Q Consensus 362 G 362 (487)
-
T Consensus 273 k 273 (385)
T 3i6e_A 273 K 273 (385)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00066 Score=69.18 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=97.3
Q ss_pred CCeeeeeccCCHHHHHHHHH-hhCC-cCcEEEeecCCCcceeeccCccccccCChH-HHHHHHHHHhhhc--cCcEEEEe
Q psy7343 204 RPLIIQFCGNDSKNLTEAAK-LAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWP-LLTNLVSSLRQAV--QVPVSCKI 278 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~-~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~-~i~eiv~~v~~~~--~iPV~vKi 278 (487)
.|+...+...+++.+.+.++ .+++ .+..+.+..|. ++. .-.+.++++++.+ ++++.+..
T Consensus 129 v~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~K~g~----------------~~~~~d~~~v~avR~a~g~~~~l~vDa 192 (367)
T 3dg3_A 129 MRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGR----------------RPVQLDTAVVRALRERFGDAIELYVDG 192 (367)
T ss_dssp EEEEEEEESSCHHHHHHHHHHHHHHHCCCEEEEECCC----------------SSTHHHHHHHHHHHHHHGGGSEEEEEC
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHhcCccEEEEeeCC----------------ChhhhHHHHHHHHHHHhCCCCEEEEEC
Confidence 45555555567888776555 4555 57777776554 111 2345667777776 56777766
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
.-+|+..+..++++.+++.|++.|- | + . ...+++..+++++.+++||++.+.+.+.+++.++++...+|.
T Consensus 193 n~~~~~~~a~~~~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~ 262 (367)
T 3dg3_A 193 NRGWSAAESLRAMREMADLDLLFAE-------E-L-C-PADDVLSRRRLVGQLDMPFIADESVPTPADVTREVLGGSATA 262 (367)
T ss_dssp TTCSCHHHHHHHHHHTTTSCCSCEE-------S-C-S-CTTSHHHHHHHHHHCSSCEEECTTCSSHHHHHHHHHHTSCSE
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEE-------C-C-C-CcccHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCE
Confidence 5577878888999999999988874 1 1 1 234788899999999999999999999999999997777999
Q ss_pred EEe
Q psy7343 359 VMT 361 (487)
Q Consensus 359 Vmi 361 (487)
|++
T Consensus 263 v~~ 265 (367)
T 3dg3_A 263 ISI 265 (367)
T ss_dssp EEE
T ss_pred EEe
Confidence 886
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=7.6e-05 Score=71.66 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=49.8
Q ss_pred CCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc-cccC
Q psy7343 319 ASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA-LFTG 374 (487)
Q Consensus 319 ~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~-lf~~ 374 (487)
.+.+.++++++.+ ++|+++.|||+|++++++++ + |||+|.+|+++..+|. ++++
T Consensus 168 ~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~-~-gAd~VIVGSa~v~~~~~~~~~ 223 (240)
T 1viz_A 168 GDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-E-HADVIVVGNAVYEDFDRALKT 223 (240)
T ss_dssp CCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH-T-TCSEEEECTHHHHCHHHHHTH
T ss_pred ChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHH-h-CCCEEEEChHHHhCHHHHHHH
Confidence 4789999999999 99999999999999999998 5 9999999999999998 7653
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0014 Score=67.03 Aligned_cols=134 Identities=11% Similarity=0.167 Sum_probs=98.2
Q ss_pred CCeeeeeccCCHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeec
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRI 280 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~ 280 (487)
.|+...+...+++++.+.++. +++.+..+.+..|. +++.-.+.++++++++ ++++.+...-
T Consensus 132 v~~y~t~g~~~~e~~~~~a~~~~~~Gf~~~KlK~g~----------------~~~~d~~~v~avR~a~g~~~~L~vDaN~ 195 (379)
T 3r0u_A 132 IVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGA----------------DFNRDIQLLKALDNEFSKNIKFRFDANQ 195 (379)
T ss_dssp EEBCEEECCCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHCCTTSEEEEECTT
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHcCCCEEeeecCC----------------CHHHHHHHHHHHHHhcCCCCeEEEeCCC
Confidence 455555555678877766554 44456666665542 3555567788888887 4677776655
Q ss_pred ccccccHHHHHHHHHH--cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 281 YQDVNKTVEYARMLER--AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~--~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
+|+..+..++++.+++ .|+..|- | + . ...+++..+++++.+++||.++..+.+..|+.++++...+|.
T Consensus 196 ~w~~~~A~~~~~~l~~~~~~l~~iE-------e-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~ 265 (379)
T 3r0u_A 196 GWNLAQTKQFIEEINKYSLNVEIIE-------Q-P-V-KYYDIKAMAEITKFSNIPVVADESVFDAKDAERVIDEQACNM 265 (379)
T ss_dssp CCCHHHHHHHHHHHHTSCCCEEEEE-------C-C-S-CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTTCCSE
T ss_pred CcCHHHHHHHHHHHhhcCCCcEEEE-------C-C-C-CcccHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCE
Confidence 7788888999999999 6666653 2 1 1 234789999999999999999999999999999997667899
Q ss_pred EEecc
Q psy7343 359 VMTAE 363 (487)
Q Consensus 359 VmiGR 363 (487)
|++--
T Consensus 266 v~~k~ 270 (379)
T 3r0u_A 266 INIKL 270 (379)
T ss_dssp EEECH
T ss_pred EEECc
Confidence 88643
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0011 Score=68.19 Aligned_cols=138 Identities=16% Similarity=0.186 Sum_probs=103.0
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEe
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKI 278 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKi 278 (487)
...|+...+...+++++.+.++.+ ++.+..+.+..|++.. ..+++.-.+.++++++++ ++++.+..
T Consensus 133 ~~v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~-----------~~~~~~d~~~v~avR~a~G~~~~L~vDa 201 (386)
T 3fv9_G 133 GPVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEA-----------EGGPALDAERITACLADRQPGEWYLADA 201 (386)
T ss_dssp SCBCEEEEECSCCHHHHHHHHHHHHHTTCCEEEEECCCCTT-----------TTHHHHHHHHHHHHTTTCCTTCEEEEEC
T ss_pred CceeeeEecCCCCHHHHHHHHHHHHHCCCCEEEEeccCCCC-----------CCCHHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 346777667777888888766654 5558999999887521 124566677888899887 46777766
Q ss_pred ecccccccHHHHHHHH-HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 279 RIYQDVNKTVEYARML-ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 279 R~~~d~~~~~e~a~~l-e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
.-+|+..+..++++.+ ++.++ .| +| + . ++++..+++++.+++||.+...+.+..++.++++...+|
T Consensus 202 N~~~~~~~A~~~~~~l~~~~~i-~i-------Ee-P-~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~a~d 268 (386)
T 3fv9_G 202 NNGLTVEHALRMLSLLPPGLDI-VL-------EA-P-C---ASWAETKSLRARCALPLLLDELIQTETDLIAAIRDDLCD 268 (386)
T ss_dssp TTCCCHHHHHHHHHHSCSSCCC-EE-------EC-C-C---SSHHHHHHHHTTCCSCEEESTTCCSHHHHHHHHHTTCCS
T ss_pred CCCCCHHHHHHHHHHhhccCCc-EE-------ec-C-C---CCHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCC
Confidence 5567777777888888 66665 44 22 1 2 278999999999999999999999999999999777899
Q ss_pred EEEecc
Q psy7343 358 GVMTAE 363 (487)
Q Consensus 358 ~VmiGR 363 (487)
.|++--
T Consensus 269 ~v~~k~ 274 (386)
T 3fv9_G 269 GVGLKV 274 (386)
T ss_dssp EEEEEH
T ss_pred EEEECc
Confidence 998643
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0018 Score=61.38 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=85.9
Q ss_pred HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc---CcEEEEeecccccccHHHHHHH
Q psy7343 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ---VPVSCKIRIYQDVNKTVEYARM 293 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~---iPV~vKiR~~~d~~~~~e~a~~ 293 (487)
...++.. ++...|.||+-+.. |.....+|+.+.+-+.++++.++ ++|++-.-.. +.++....++.
T Consensus 69 k~~E~~~-i~~GAdEID~Vini----------g~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~L-t~eei~~a~~i 136 (226)
T 1vcv_A 69 RIALVSR-LAEVADEIDVVAPI----------GLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYL-RDEERYTLYDI 136 (226)
T ss_dssp HHHHHHH-HTTTCSEEEEECCH----------HHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGC-CHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCCEEEEecch----------hhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCC-CHHHHHHHHHH
Confidence 4456666 77778999864322 22223478888888888888763 3333322111 33457778888
Q ss_pred HHHcCCcEEEEEc-ccc---CCCCCCCCCCCHHHHHHHHhh---CC--CcEEEcCCCCCHHHHHHHHHhc---CCc----
Q psy7343 294 LERAGCQLLAVHG-RTV---DQRGMNTGLASWEHITAVRKA---LT--IPVIANGNIQCLADVEACLAQT---GVA---- 357 (487)
Q Consensus 294 le~~G~d~I~Vhg-Rt~---~~~g~~~g~~~~~~i~~i~~~---~~--iPVi~nGgI~s~~da~~~l~~~---Gad---- 357 (487)
..++|+|.|--+- -+. ....+..+.+..+.++.+++. ++ ++|-++|||+|.+|+.+++ +. |++
T Consensus 137 a~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i-~a~~~Ga~~~~f 215 (226)
T 1vcv_A 137 IAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIV-DAIGWGEDPARV 215 (226)
T ss_dssp HHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHH-HHHCSCSCTTTE
T ss_pred HHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-HHHHCCCCcCCc
Confidence 8999999997621 110 000001356777666666665 54 9999999999999999999 56 887
Q ss_pred EEEecc
Q psy7343 358 GVMTAE 363 (487)
Q Consensus 358 ~VmiGR 363 (487)
.+...+
T Consensus 216 RiGtS~ 221 (226)
T 1vcv_A 216 RLGTST 221 (226)
T ss_dssp EEEESC
T ss_pred eEecCc
Confidence 554443
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00063 Score=62.85 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=67.4
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
++..+-.+=+ -|........+.++++..|.+-+ +.|.. -+.++++++.+++|||+.|.|+|.+|+.++
T Consensus 101 gL~tIqR~Fl-iDS~al~~~~~~i~~~~PD~iEi----------LPGi~-p~iI~~i~~~~~~PiIaGGlI~~~edv~~a 168 (192)
T 3kts_A 101 KMLAIQRLFM-IDSSAYNKGVALIQKVQPDCIEL----------LPGII-PEQVQKMTQKLHIPVIAGGLIETSEQVNQV 168 (192)
T ss_dssp TCEEEEEEEC-CSHHHHHHHHHHHHHHCCSEEEE----------ECTTC-HHHHHHHHHHHCCCEEEESSCCSHHHHHHH
T ss_pred CCeEEEEEEE-EEcchHHHHHHHHhhcCCCEEEE----------CCchh-HHHHHHHHHhcCCCEEEECCcCCHHHHHHH
Confidence 5544444311 24445677788888999999987 33432 478999999999999999999999999999
Q ss_pred HHhcCCcEEEeccccccCc
Q psy7343 351 LAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P 369 (487)
+ +.||++|..++..+++-
T Consensus 169 l-~aGA~aVsTs~~~LW~~ 186 (192)
T 3kts_A 169 I-ASGAIAVTTSNKHLWEG 186 (192)
T ss_dssp H-TTTEEEEEECCGGGGTT
T ss_pred H-HcCCeEEEeCCHHHhCc
Confidence 9 89999999998877763
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=70.13 Aligned_cols=69 Identities=10% Similarity=0.059 Sum_probs=56.9
Q ss_pred cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
.|...|-+-. . | ..| +.+.++++++.+ ++|+++.|||+|+++++++. + |||+|.+|+++..||..+.+.
T Consensus 158 ~g~~~vY~e~-s----G-~~g--~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~-~-gAD~VVVGSai~~~~~~~~e~ 227 (235)
T 3w01_A 158 YRLPVMYIEY-S----G-IYG--DVSKVQAVSEHLTETQLFYGGGISSEQQATEMA-A-IADTIIVGDIIYKDIKKALKT 227 (235)
T ss_dssp TCCSEEEEEC-T----T-SCC--CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHH-T-TSSEEEECTHHHHCHHHHHHT
T ss_pred cCCCEEEEec-C----C-CcC--CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHH-c-CCCEEEECCceecCHHHHHHH
Confidence 4677776633 1 1 122 689999999999 99999999999999999988 5 999999999999999887654
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00057 Score=64.91 Aligned_cols=92 Identities=13% Similarity=0.216 Sum_probs=64.4
Q ss_pred HHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCC
Q psy7343 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGN 340 (487)
Q Consensus 262 iv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGg 340 (487)
+++..++ .+++++.- ..+..++ ..+.+.|+|.|.++.- .. .. -.+.++.+++.+ ++|+++.||
T Consensus 102 v~~~ar~-~g~~~i~G------v~t~~e~-~~A~~~Gad~vk~Fpa--~~---~g---G~~~lk~l~~~~~~ipvvaiGG 165 (224)
T 1vhc_A 102 IVKLCQD-LNFPITPG------VNNPMAI-EIALEMGISAVKFFPA--EA---SG---GVKMIKALLGPYAQLQIMPTGG 165 (224)
T ss_dssp HHHHHHH-TTCCEECE------ECSHHHH-HHHHHTTCCEEEETTT--TT---TT---HHHHHHHHHTTTTTCEEEEBSS
T ss_pred HHHHHHH-hCCCEEec------cCCHHHH-HHHHHCCCCEEEEeeC--cc---cc---CHHHHHHHHhhCCCCeEEEECC
Confidence 3444444 56776653 2344444 5566899999999541 00 11 267899999988 899999999
Q ss_pred CCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 341 IQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 341 I~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
|+ .+++.++++..|+++|. |+++...+.+
T Consensus 166 I~-~~N~~~~l~agga~~v~-gS~i~~~~~i 194 (224)
T 1vhc_A 166 IG-LHNIRDYLAIPNIVACG-GSWFVEKKLI 194 (224)
T ss_dssp CC-TTTHHHHHTSTTBCCEE-ECGGGCHHHH
T ss_pred cC-HHHHHHHHhcCCCEEEE-EchhcCcchh
Confidence 95 58899999434999999 9888776655
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00023 Score=67.99 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=57.8
Q ss_pred HHHHHHHHcCC-----cEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 289 EYARMLERAGC-----QLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 289 e~a~~le~~G~-----d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+.++.+.+.|. ..|-+-+ +. -..+.+.++++++.+ ++|+++.|||+|++++++++ + |||+|.+|
T Consensus 149 e~~~~~a~~g~~~l~~~~Vyl~~-~G-------~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~-~-gAd~VIVG 218 (234)
T 2f6u_A 149 ELAASYALVGEKLFNLPIIYIEY-SG-------TYGNPELVAEVKKVLDKARLFYGGGIDSREKAREML-R-YADTIIVG 218 (234)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEC-TT-------SCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHH-H-HSSEEEEC
T ss_pred HHHHHHHHhhhhhcCCCEEEEeC-CC-------CcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHH-h-CCCEEEEC
Confidence 55555555554 6665534 21 134789999999999 99999999999999999998 5 99999999
Q ss_pred cccccCccc
Q psy7343 363 EGNLYNPAL 371 (487)
Q Consensus 363 Ra~l~~P~l 371 (487)
+++..+|.-
T Consensus 219 Sa~v~~~~~ 227 (234)
T 2f6u_A 219 NVIYEKGID 227 (234)
T ss_dssp HHHHHHCHH
T ss_pred hHHHhCHHH
Confidence 999988754
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00099 Score=67.99 Aligned_cols=120 Identities=13% Similarity=0.152 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHH
Q psy7343 213 NDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 213 ~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~ 290 (487)
.+++++.+.++.+ ++.|+.+.++.| | ..+.+ .++++++++ ++++.+...-+|+.++ .++
T Consensus 147 ~~~~~~~~~a~~~~~~G~~~iKik~~-~-------------~~d~~----~v~avr~a~~~~~l~vDan~~~~~~~-~~~ 207 (375)
T 1r0m_A 147 ADEQATVDLVRRHVEQGYRRIKLKIK-P-------------GWDVQ----PVRATREAFPDIRLTVDANSAYTLAD-AGR 207 (375)
T ss_dssp SSHHHHHHHHHHHHHTTCSCEEEECB-T-------------TBSHH----HHHHHHHHCTTSCEEEECTTCCCGGG-HHH
T ss_pred CCHHHHHHHHHHHHHhcccEEEEecC-h-------------HHHHH----HHHHHHHHcCCCeEEEeCCCCCCHHH-HHH
Confidence 3788887766544 445787777643 1 12333 345566554 5677776655678888 999
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.++++|++.|- | + . .+.+++..+++++.+++||.+.+.+.+.+++.++++...+|.|++
T Consensus 208 ~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 268 (375)
T 1r0m_A 208 LRQLDEYDLTYIE-------Q-P-L-AWDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINL 268 (375)
T ss_dssp HHTTGGGCCSCEE-------C-C-S-CTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEEE
T ss_pred HHHHHhCCCcEEE-------C-C-C-CcccHHHHHHHHHhCCCCEEecCccCCHHHHHHHHHhCCCCEEEE
Confidence 9999999999884 2 1 2 235788999999999999999999999999999997777999987
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0012 Score=68.96 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=104.5
Q ss_pred CCCeeeeeccCCHHHHHHHHHh-hCCcCcEEEeecCCCcce-----------eeccC------------ccccc--cCCh
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMV-----------AKRGH------------YGAYL--QDDW 256 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i-----------~~~gr------------~G~~l--~~d~ 256 (487)
..|+...+.+.+++++.+.++. +++.|..+-+..|..... ...++ -|... ..+.
T Consensus 144 ~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (440)
T 3t6c_A 144 GIALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYA 223 (440)
T ss_dssp SEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHHH
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhhH
Confidence 3455444556788888776654 455688888887742100 00000 00000 0013
Q ss_pred HHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc
Q psy7343 257 PLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP 334 (487)
Q Consensus 257 ~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP 334 (487)
+...+.++++|+++ ++++.+...-+++..+..++++.+++.|++.|- | + . .+.+++..+++++.+++|
T Consensus 224 ~~d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------e-P-~-~~~d~~~~~~l~~~~~iP 293 (440)
T 3t6c_A 224 KSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLE-------D-P-V-APENTEWLKMLRQQSSTP 293 (440)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------C-S-S-CGGGGGGHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEE-------C-C-C-ChhhHHHHHHHHhhcCCC
Confidence 45677788899887 578888776678888889999999999999884 1 1 1 223678889999999999
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
|.+.+.+.+..++.++++...+|.|++--
T Consensus 294 Ia~dE~~~~~~~~~~~i~~~a~d~v~~k~ 322 (440)
T 3t6c_A 294 IAMGELFVNVNEWKPLIDNKLIDYIRCHI 322 (440)
T ss_dssp EEECTTCCSHHHHHHHHHTTCCSEECCCG
T ss_pred EEeCcccCCHHHHHHHHHcCCccceeech
Confidence 99999999999999999777789887643
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00093 Score=69.15 Aligned_cols=137 Identities=16% Similarity=0.148 Sum_probs=97.3
Q ss_pred CCHHHHHHHHHhh-CCcCcEEEeecCCCcceee---c-cCccc----cccCC---hHHHHHHHHHHhhhc--cCcEEEEe
Q psy7343 213 NDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAK---R-GHYGA----YLQDD---WPLLTNLVSSLRQAV--QVPVSCKI 278 (487)
Q Consensus 213 ~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~---~-gr~G~----~l~~d---~~~i~eiv~~v~~~~--~iPV~vKi 278 (487)
.+++++.+.++.+ ++.|..+-+..+.+..-.. . |. +. ....+ .+...++++++|+++ ++++.+..
T Consensus 142 ~~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~-~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDa 220 (409)
T 3go2_A 142 TDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGF-AVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDL 220 (409)
T ss_dssp CSHHHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGG-TBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcccccccccccccccCC-CccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3678887776654 4458888776532110000 0 11 10 00011 345567888898887 57788776
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
.-+++.++..++++.+++.|++.|.. + ..+++..+++++.+++||++.+.+.+.+++.++++...+|.
T Consensus 221 N~~~~~~~A~~~~~~L~~~~i~~iE~--------P----~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~ 288 (409)
T 3go2_A 221 NFNAKPEGYLKILRELADFDLFWVEI--------D----SYSPQGLAYVRNHSPHPISSCETLFGIREFKPFFDANAVDV 288 (409)
T ss_dssp TTCSCHHHHHHHHHHTTTSCCSEEEC--------C----CSCHHHHHHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSE
T ss_pred CCCCCHHHHHHHHHHHhhcCCeEEEe--------C----cCCHHHHHHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCE
Confidence 55777788899999999999999874 1 13788999999999999999999999999999997777899
Q ss_pred EEec
Q psy7343 359 VMTA 362 (487)
Q Consensus 359 VmiG 362 (487)
|++=
T Consensus 289 v~~k 292 (409)
T 3go2_A 289 AIVD 292 (409)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8864
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0014 Score=68.11 Aligned_cols=95 Identities=9% Similarity=0.110 Sum_probs=62.7
Q ss_pred CCCCCeeeeec---------cCCHHHHHHHHHhhCC-c-CcEEEeecCCCcce-eeccCccccccCChHHHHHHHHHHhh
Q psy7343 201 PEDRPLIIQFC---------GNDSKNLTEAAKLAEP-H-CDGIDINIGCPQMV-AKRGHYGAYLQDDWPLLTNLVSSLRQ 268 (487)
Q Consensus 201 ~~~~Pv~Vqi~---------g~d~~~~~~aa~~~~~-~-~d~IdiN~GcP~~i-~~~gr~G~~l~~d~~~i~eiv~~v~~ 268 (487)
+.+.||+++|. |.+.+++.++++.+++ . .|.|++..|.-... ......+.. .+++.+ +.+++
T Consensus 240 ~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~--~~~~~a----~~Ik~ 313 (419)
T 3l5a_A 240 PDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDH--FGRPVN----QIVYE 313 (419)
T ss_dssp CTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTT--TTSBHH----HHHHH
T ss_pred CCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCcc--ccHHHH----HHHHH
Confidence 45779999986 3367888999998887 6 89999987641100 000001111 133443 34555
Q ss_pred hc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 269 AV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 269 ~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.+ ++||++++ ++.+..++.+.+++ +|.|++ ||.
T Consensus 314 ~v~~~iPVI~~G----gI~t~e~Ae~~L~~--aDlVai-GR~ 348 (419)
T 3l5a_A 314 HLAGRIPLIASG----GINSPESALDALQH--ADMVGM-SSP 348 (419)
T ss_dssp HHTTSSCEEECS----SCCSHHHHHHHGGG--CSEEEE-STH
T ss_pred HcCCCCeEEEEC----CCCCHHHHHHHHHh--CCcHHH-HHH
Confidence 55 58999998 55577777777776 999999 885
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00019 Score=77.29 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=63.8
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCH-----------HHHHHHHHhc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCL-----------ADVEACLAQT 354 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~-----------~da~~~l~~~ 354 (487)
+..++++.+++.|+|++++-.-+....+......+.+.++++++.+++||++.|||++. +++.+++ +.
T Consensus 281 dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l-~a 359 (555)
T 1jvn_A 281 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYF-RS 359 (555)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHH-Hc
Confidence 78899999999999999874332211111112235788999999999999999999998 5599999 78
Q ss_pred CCcEEEeccccccC
Q psy7343 355 GVAGVMTAEGNLYN 368 (487)
Q Consensus 355 Gad~VmiGRa~l~~ 368 (487)
|||.|.||++++.|
T Consensus 360 Gad~V~igt~~~~~ 373 (555)
T 1jvn_A 360 GADKVSIGTDAVYA 373 (555)
T ss_dssp TCSEEEECHHHHHH
T ss_pred CCCEEEECCHHhhC
Confidence 99999999999875
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00055 Score=71.27 Aligned_cols=149 Identities=11% Similarity=0.133 Sum_probs=100.2
Q ss_pred CCCeeeeeccCCHHHHHHHH-HhhCCcCcEEEeecCCCcceeeccC---cc--------cccc--------CChHHHHHH
Q psy7343 203 DRPLIIQFCGNDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGH---YG--------AYLQ--------DDWPLLTNL 262 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa-~~~~~~~d~IdiN~GcP~~i~~~gr---~G--------~~l~--------~d~~~i~ei 262 (487)
..|+.....+.++++..+.+ +.+++.|..+-+..|.|......+. .+ .... ...+...+.
T Consensus 138 ~v~~y~~~~~~~~~~~~~~~~~~~~~Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 217 (426)
T 4e4f_A 138 GVMVYCHTTGHSIDEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKL 217 (426)
T ss_dssp SEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHH
T ss_pred ceeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 34555555566777666544 4556669999998887532110000 00 0000 012345678
Q ss_pred HHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCC
Q psy7343 263 VSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGN 340 (487)
Q Consensus 263 v~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGg 340 (487)
++++|+++ ++++.+...-+++..+..++++.++++|++.|-- + . .+.+++..+++++.+++||++.+.
T Consensus 218 v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P-~-~~~d~~~~~~l~~~~~iPIa~dE~ 287 (426)
T 4e4f_A 218 FEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWMED--------P-T-PAENQACFRLIRQHTVTPIAVGEV 287 (426)
T ss_dssp HHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEEC--------C-S-CCSSGGGGHHHHTTCCSCEEECTT
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEEC--------C-C-ChHHHHHHHHHHhcCCCCEEeCCC
Confidence 88899887 5788887666778888899999999999998842 1 1 234678889999999999999999
Q ss_pred CCCHHHHHHHHHhcCCcEEEe
Q psy7343 341 IQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 341 I~s~~da~~~l~~~Gad~Vmi 361 (487)
+.+..++.++++...+|.|++
T Consensus 288 ~~~~~~~~~~i~~ga~d~v~~ 308 (426)
T 4e4f_A 288 FNSIWDCKQLIEEQLIDYIRT 308 (426)
T ss_dssp CCSGGGTHHHHHTTCCSEECC
T ss_pred cCCHHHHHHHHHcCCCCEEEe
Confidence 999999999997777898864
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00066 Score=63.65 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcc--ccCCCCCCCCCCCHHHHHHHHhh--CCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGR--TVDQRGMNTGLASWEHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgR--t~~~~g~~~g~~~~~~i~~i~~~--~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
.+..++ ...+ .|+|+|.+.+- |.. +.++.....|+.++++++. .++||++.|||+ ++++.+++ +.|+++|.
T Consensus 96 ~t~~e~-~~A~-~GaDyv~~g~vf~t~s-k~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~-~~Ga~gVa 170 (210)
T 3ceu_A 96 HSVEEV-KNRK-HFYDYVFMSPIYDSIS-KVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIK-DFGFGGAV 170 (210)
T ss_dssp CSHHHH-HTTG-GGSSEEEECCCC----------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHH-HTTCSEEE
T ss_pred CCHHHH-HHHh-hCCCEEEECCcCCCCC-CCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHH-HhCCCEEE
Confidence 345554 3345 89999998321 111 1112234578999999887 689999999998 88999999 69999999
Q ss_pred eccccccCcc
Q psy7343 361 TAEGNLYNPA 370 (487)
Q Consensus 361 iGRa~l~~P~ 370 (487)
+++++...++
T Consensus 171 v~s~i~~~~d 180 (210)
T 3ceu_A 171 VLGDLWNKFD 180 (210)
T ss_dssp ESHHHHTTCC
T ss_pred EhHHhHcCCC
Confidence 9999986543
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0025 Score=65.27 Aligned_cols=135 Identities=16% Similarity=0.231 Sum_probs=97.7
Q ss_pred CCeeeeeccCCHHH-HHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 204 RPLIIQFCGNDSKN-LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~-~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
.|+...+...++++ ..++++.+++ .+..+.+..|. .+++.-.+.++++++++ ++++.+...
T Consensus 138 v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~---------------~~~~~d~~~v~avR~a~g~~~~l~vDaN 202 (382)
T 3dgb_A 138 LPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGA---------------GEVDRDLAHVIAIKKALGDSASVRVDVN 202 (382)
T ss_dssp EEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECCS---------------SCHHHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred eeEEEEecCCChHHHHHHHHHHHHhCCCCEEEEeeCC---------------CCHHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence 44444444345554 4556666664 47766666554 13444556777788876 367777766
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+|+..+..++++.+++.|+.+|- | + . .+.+++..+++++.+++||.+...+.+..++.++++..++|.|
T Consensus 203 ~~~~~~~A~~~~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~~~d~v 272 (382)
T 3dgb_A 203 QAWDEAVALRACRILGGNGIDLIE-------Q-P-I-SRNNRAGMVRLNASSPAPIMADESIECVEDAFNLAREGAASVF 272 (382)
T ss_dssp TCBCHHHHHHHHHHHHTTTCCCEE-------C-C-B-CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCcCeee-------C-C-C-CccCHHHHHHHHHhCCCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence 677888889999999999988773 2 1 1 2347899999999999999999999999999999977789999
Q ss_pred Eecc
Q psy7343 360 MTAE 363 (487)
Q Consensus 360 miGR 363 (487)
++--
T Consensus 273 ~~k~ 276 (382)
T 3dgb_A 273 ALKI 276 (382)
T ss_dssp EECH
T ss_pred Eecc
Confidence 8753
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0015 Score=66.54 Aligned_cols=120 Identities=9% Similarity=0.145 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHH
Q psy7343 213 NDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 213 ~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~ 290 (487)
.+++++.+.++.+ ++.++.+.++.| | ..+.+ .++++++.+ ++++.+...-+|+.++ .++
T Consensus 140 ~~~~~~~~~a~~~~~~G~~~iKik~~-~-------------~~d~~----~v~avr~a~~~~~l~vDan~~~~~~~-~~~ 200 (369)
T 2zc8_A 140 PSVEDTLRVVERHLEEGYRRIKLKIK-P-------------GWDYE----VLKAVREAFPEATLTADANSAYSLAN-LAQ 200 (369)
T ss_dssp SSHHHHHHHHHHHHHTTCSCEEEECB-T-------------TBSHH----HHHHHHHHCTTSCEEEECTTCCCGGG-HHH
T ss_pred CCHHHHHHHHHHHHHhhhheeeeecC-h-------------hHHHH----HHHHHHHHcCCCeEEEecCCCCCHHH-HHH
Confidence 3788887766544 445777777643 1 12333 345555554 5677776655678888 999
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.++++|++.|- | + . .+.+++..+++++.+++||.+.+.+.+..++.++++...+|.|++
T Consensus 201 ~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 261 (369)
T 2zc8_A 201 LKRLDELRLDYIE-------Q-P-L-AYDDLLDHAKLQRELSTPICLDESLTGAEKARKAIELGAGRVFNV 261 (369)
T ss_dssp HHGGGGGCCSCEE-------C-C-S-CTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHhCCCcEEE-------C-C-C-CcccHHHHHHHHhhCCCCEEEcCccCCHHHHHHHHHhCCCCEEEE
Confidence 9999999999875 1 1 2 235788899999999999999999999999999997777999886
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0016 Score=67.10 Aligned_cols=99 Identities=12% Similarity=0.045 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHhhhc--cCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC
Q psy7343 255 DWPLLTNLVSSLRQAV--QVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~--~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~ 331 (487)
+++.-.++++++|+++ ++++.+...-++ +.++..++++.+++.|+++|- + + . .+.+++..+++++.+
T Consensus 182 ~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~iE-------e-P-~-~~~~~~~~~~l~~~~ 251 (394)
T 3mqt_A 182 SDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFIE-------A-C-L-QHDDLIGHQKLAAAI 251 (394)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEEE-------S-C-S-CTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEEE-------C-C-C-CcccHHHHHHHHhhC
Confidence 5667778888899887 577887766677 778889999999999999884 1 1 1 234789999999999
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
++||++.+.+.+..++.++++...+|.|++--
T Consensus 252 ~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~ 283 (394)
T 3mqt_A 252 NTRLCGAEMSTTRFEAQEWLEKTGISVVQSDY 283 (394)
T ss_dssp SSEEEECTTCCHHHHHHHHHHHHCCSEECCCT
T ss_pred CCCEEeCCCcCCHHHHHHHHHcCCCCeEecCc
Confidence 99999999999999999999777899987643
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0032 Score=64.64 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=96.1
Q ss_pred CHHHHHH-HHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHH
Q psy7343 214 DSKNLTE-AAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 214 d~~~~~~-aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e 289 (487)
++++..+ +++.. ++.|..+.+..|.+. +......++...+.++++|+++ ++++.+...-+++..+..+
T Consensus 146 ~~~~~~~~~~~~~~~~Gf~~~K~KvG~~~--------~~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~ 217 (388)
T 3tcs_A 146 TPRDEAERLKRLRDTQGFTAFKVRAGAEV--------GRNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIE 217 (388)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEECSCTT--------CTTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEccCCCc--------ccccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHH
Confidence 4554443 44433 445888888888742 1111123555667888899887 5678877766778888899
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+++.+++.|+..|- | + . ...+++..+++++.+++||.+...+.+..++.++++...+|.|++-
T Consensus 218 ~~~~l~~~~i~~iE-------e-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d 280 (388)
T 3tcs_A 218 VGHMLQDHGFCHFE-------E-P-C-PYWELAQTKQVTDALDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPD 280 (388)
T ss_dssp HHHHHHHTTCCEEE-------C-C-S-CTTCHHHHHHHHHHCSSCEEECTTCCCHHHHHHHHHHTCCSEECCC
T ss_pred HHHHHhhcCCeEEE-------C-C-C-CccCHHHHHHHHHhcCCCEEcCCccCCHHHHHHHHHcCCCCEEEeC
Confidence 99999999998773 2 1 1 2347899999999999999999999999999999977778888654
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0026 Score=65.33 Aligned_cols=132 Identities=13% Similarity=0.070 Sum_probs=96.4
Q ss_pred CCeeeeeccCCHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc---cCcEEEEee
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV---QVPVSCKIR 279 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~---~iPV~vKiR 279 (487)
.|+...+...+++++.+.++. +++.+..+.+..|++ +++.-.+.++++++++ ++++.+...
T Consensus 154 v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~KlKvg~~---------------~~~~d~~~v~avR~a~gg~~~~L~vDaN 218 (391)
T 4e8g_A 154 VPSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGR---------------PVEIDIETVRKVWERIRGTGTRLAVDGN 218 (391)
T ss_dssp EECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS---------------CHHHHHHHHHHHHHHHTTTTCEEEEECT
T ss_pred EEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEcCCCC---------------CHHHHHHHHHHHHHHhCCCCCeEEEeCC
Confidence 345455556688888776654 445577777776651 3444456677777665 356666655
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+|+..+..++++.+++.++ .| +| + ..+++..+++++.+++||.+...+.+..|+.++++...+|.|
T Consensus 219 ~~w~~~~A~~~~~~L~~~~i-~i-------Ee-P----~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v 285 (391)
T 4e8g_A 219 RSLPSRDALRLSRECPEIPF-VL-------EQ-P----CNTLEEIAAIRGRVQHGIYLDESGEDLSTVIRAAGQGLCDGF 285 (391)
T ss_dssp TCCCHHHHHHHHHHCTTSCE-EE-------ES-C----SSSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCe-EE-------ec-C----CccHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence 56777788888888888876 54 22 2 247899999999999999999999999999999977779998
Q ss_pred Eecc
Q psy7343 360 MTAE 363 (487)
Q Consensus 360 miGR 363 (487)
++--
T Consensus 286 ~ik~ 289 (391)
T 4e8g_A 286 GMKL 289 (391)
T ss_dssp EEEH
T ss_pred EeCc
Confidence 8743
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0018 Score=64.02 Aligned_cols=96 Identities=14% Similarity=0.204 Sum_probs=64.9
Q ss_pred HHHHHHHHhhhccCcEEEEeeccc----ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQ----DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP 334 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~----d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP 334 (487)
+.++++...+ .++|+++....+. |.+.....++...+.|+|.|-+. |++ +.++++.+..++|
T Consensus 160 i~~v~~~a~~-~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~---------~t~----e~~~~vv~~~~vP 225 (295)
T 3glc_A 160 IIQLVDAGMK-VGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY---------YVE----KGFERIVAGCPVP 225 (295)
T ss_dssp HHHHHHHHHT-TTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEE---------CCT----TTHHHHHHTCSSC
T ss_pred HHHHHHHHHH-cCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeC---------CCH----HHHHHHHHhCCCc
Confidence 3444444433 3799998543221 22223457888889999999872 222 2367788888999
Q ss_pred EEEcCCCC-CHHHHH----HHHHhcCCcEEEeccccccCc
Q psy7343 335 VIANGNIQ-CLADVE----ACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 335 Vi~nGgI~-s~~da~----~~l~~~Gad~VmiGRa~l~~P 369 (487)
|++.||+. +.+++. +.+ +.||+|+.+||.++..|
T Consensus 226 Vv~~GG~~~~~~~~l~~v~~ai-~aGA~Gv~vGRnI~q~~ 264 (295)
T 3glc_A 226 IVIAGGKKLPEREALEMCWQAI-DQGASGVDMGRNIFQSD 264 (295)
T ss_dssp EEEECCSCCCHHHHHHHHHHHH-HTTCSEEEESHHHHTSS
T ss_pred EEEEECCCCCHHHHHHHHHHHH-HhCCeEEEeHHHHhcCc
Confidence 99999998 444444 445 47999999999988765
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0067 Score=62.03 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=96.4
Q ss_pred CCeeeeeccCCHHHH-HHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEee
Q psy7343 204 RPLIIQFCGNDSKNL-TEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIR 279 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~-~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR 279 (487)
.|+...+...++++. .++++.+++. +..+.+..|. .+++.-.+.++++++.++ +++.+...
T Consensus 137 v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~---------------~~~~~d~~~v~avR~a~g~~~~l~vDaN 201 (381)
T 3fcp_A 137 LPVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGA---------------RELATDLRHTRAIVEALGDRASIRVDVN 201 (381)
T ss_dssp EEBCEEECSSCHHHHHHHHHHHTC----CEEEEECCS---------------SCHHHHHHHHHHHHHHTCTTCEEEEECT
T ss_pred eeeEEEecCCChHHHHHHHHHHHHhCCCCEEEEecCC---------------CChHHHHHHHHHHHHHcCCCCeEEEECC
Confidence 455444544466554 4555666643 6766666554 134555667788888874 56776665
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+|+..+..++++.+++.|+..|- | + . ...+++..+++++.+++||.+...+.+..++.++++..++|.|
T Consensus 202 ~~~~~~~A~~~~~~l~~~~i~~iE-------e-P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v 271 (381)
T 3fcp_A 202 QAWDAATGAKGCRELAAMGVDLIE-------Q-P-V-SAHDNAALVRLSQQIETAILADEAVATAYDGYQLAQQGFTGAY 271 (381)
T ss_dssp TCBCHHHHHHHHHHHHHTTCSEEE-------C-C-B-CTTCHHHHHHHHHHSSSEEEESTTCCSHHHHHHHHHTTCCSEE
T ss_pred CCCCHHHHHHHHHHHhhcCcccee-------C-C-C-CcccHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHcCCCCEE
Confidence 567778889999999999988773 2 1 1 2357899999999999999999999999999999977789999
Q ss_pred Eecc
Q psy7343 360 MTAE 363 (487)
Q Consensus 360 miGR 363 (487)
++--
T Consensus 272 ~~k~ 275 (381)
T 3fcp_A 272 ALKI 275 (381)
T ss_dssp EECH
T ss_pred Eecc
Confidence 8743
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=69.57 Aligned_cols=77 Identities=10% Similarity=-0.012 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.++++.+++.|++.+.+-- +.+ .+.+.++++.+.+.+||...|||++. ++++++ .|||.|.+|+.
T Consensus 38 ~dp~~~A~~~~~~Ga~~l~vvD--------L~~-~n~~~i~~i~~~~~~pv~vgGGir~~-~~~~~l--~Ga~~Viigs~ 105 (260)
T 2agk_A 38 HPSSYYAKLYKDRDVQGCHVIK--------LGP-NNDDAAREALQESPQFLQVGGGINDT-NCLEWL--KWASKVIVTSW 105 (260)
T ss_dssp CCHHHHHHHHHHTTCTTCEEEE--------ESS-SCHHHHHHHHHHSTTTSEEESSCCTT-THHHHT--TTCSCEEECGG
T ss_pred CCHHHHHHHHHHcCCCEEEEEe--------CCC-CCHHHHHHHHhcCCceEEEeCCCCHH-HHHHHh--cCCCEEEECcH
Confidence 4789999999999999887721 112 56889999999999999999999987 999998 89999999999
Q ss_pred cccC-----ccccc
Q psy7343 365 NLYN-----PALFT 373 (487)
Q Consensus 365 ~l~~-----P~lf~ 373 (487)
++.| |.++.
T Consensus 106 a~~~~g~~~p~~~~ 119 (260)
T 2agk_A 106 LFTKEGHFQLKRLE 119 (260)
T ss_dssp GBCTTCCBCHHHHH
T ss_pred HHhhcCCCCHHHHH
Confidence 9999 87765
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0018 Score=66.71 Aligned_cols=98 Identities=6% Similarity=-0.044 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHhhhc--cCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC
Q psy7343 255 DWPLLTNLVSSLRQAV--QVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~--~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~ 331 (487)
+++.-.+.++++|+++ ++++.+...-++ +.++..++++.+++.|+++|-- + . .+.+++..+++++.+
T Consensus 187 ~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~iEe--------P-~-~~~d~~~~~~l~~~~ 256 (394)
T 3mkc_A 187 STKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFAEA--------T-L-QHDDLSGHAKLVENT 256 (394)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEEES--------C-S-CTTCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEEEC--------C-C-CchhHHHHHHHHhhC
Confidence 5666778888899887 567777765677 7788899999999999998841 1 1 234789999999999
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++||++.+.+.+.+++.++++...+|.|++-
T Consensus 257 ~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 287 (394)
T 3mkc_A 257 RSRICGAEMSTTRFEAEEWITKGKVHLLQSD 287 (394)
T ss_dssp SSCBEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred CCCEEeCCCCCCHHHHHHHHHcCCCCeEecC
Confidence 9999999999999999999977778988754
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0025 Score=65.68 Aligned_cols=132 Identities=13% Similarity=0.078 Sum_probs=95.4
Q ss_pred CCeeeeec-cCC--HHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEE
Q psy7343 204 RPLIIQFC-GND--SKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCK 277 (487)
Q Consensus 204 ~Pv~Vqi~-g~d--~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vK 277 (487)
.|+...+. ..+ ++.+.+.++.+ ++.+..+.++.+ | ..|. +.++++++++ ++++.+.
T Consensus 150 v~~~~s~g~~~~~~~e~~~~~a~~~~~~G~~~iKlKv~-~-------------~~d~----~~v~avR~a~G~~~~L~vD 211 (400)
T 3mwc_A 150 IESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIKIK-P-------------GWDV----EPLQETRRAVGDHFPLWTD 211 (400)
T ss_dssp EEBCEEECCCTTCCHHHHHHHHHHHHHHTCSCEEEECB-T-------------TBSH----HHHHHHHHHHCTTSCEEEE
T ss_pred EEeeEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEEeC-c-------------chHH----HHHHHHHHhcCCCCEEEEe
Confidence 45555554 235 88887766544 444777766653 1 1233 4455666665 5678877
Q ss_pred eecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 278 IRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 278 iR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
..-+|+..+ .++++.+++.|++.|- | + . .+.+++..+++++.+++||.+...+.+..++.++++...+|
T Consensus 212 aN~~w~~~~-~~~~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d 280 (400)
T 3mwc_A 212 ANSSFELDQ-WETFKAMDAAKCLFHE-------Q-P-L-HYEALLDLKELGERIETPICLDESLISSRVAEFVAKLGISN 280 (400)
T ss_dssp CTTCCCGGG-HHHHHHHGGGCCSCEE-------S-C-S-CTTCHHHHHHHHHHSSSCEEESTTCCSHHHHHHHHHTTCCS
T ss_pred CCCCCCHHH-HHHHHHHHhcCCCEEe-------C-C-C-ChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcCCCC
Confidence 666788888 8999999999998873 2 1 2 23478999999999999999999999999999999777899
Q ss_pred EEEeccc
Q psy7343 358 GVMTAEG 364 (487)
Q Consensus 358 ~VmiGRa 364 (487)
.|++--+
T Consensus 281 ~v~~k~~ 287 (400)
T 3mwc_A 281 IWNIKIQ 287 (400)
T ss_dssp EEEECHH
T ss_pred EEEEcch
Confidence 9987543
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0052 Score=64.14 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=97.3
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.||..|=+.-++-+..+ ++ ....|+|=|++.+ -+.+.+.++++.+++ .+..+.+-+
T Consensus 108 ~lPvLrKDFI~d~~Qi~e-a~--~~GAD~ILLi~a~---------------l~~~~l~~l~~~a~~-lgm~~LvEv---- 164 (452)
T 1pii_A 108 PQPILCKDFIIDPYQIYL-AR--YYQADACLLMLSV---------------LDDDQYRQLAAVAHS-LEMGVLTEV---- 164 (452)
T ss_dssp CSCEEEESCCCSHHHHHH-HH--HTTCSEEEEETTT---------------CCHHHHHHHHHHHHH-TTCEEEEEE----
T ss_pred CCCeEEEeccCCHHHHHH-HH--HcCCCEEEEEccc---------------CCHHHHHHHHHHHHH-cCCeEEEEe----
Confidence 689988866656654444 22 2236666666543 124567777776665 587777765
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
...+.++...+.|++.|-|..|.-.. -..+++...++.+.+ ++++|+-|||.|++|+.++. +. +|+|.
T Consensus 165 ---h~~eE~~~A~~lga~iIGinnr~L~t-----~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~-~~-a~avL 234 (452)
T 1pii_A 165 ---SNEEEQERAIALGAKVVGINNRDLRD-----LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELS-HF-ANGFL 234 (452)
T ss_dssp ---CSHHHHHHHHHTTCSEEEEESEETTT-----TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHT-TT-CSEEE
T ss_pred ---CCHHHHHHHHHCCCCEEEEeCCCCCC-----CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHH-Hh-CCEEE
Confidence 33444456667899999887774322 245788888887776 78999999999999999999 67 99999
Q ss_pred eccccccCccc
Q psy7343 361 TAEGNLYNPAL 371 (487)
Q Consensus 361 iGRa~l~~P~l 371 (487)
||.+++..++.
T Consensus 235 VGealmr~~d~ 245 (452)
T 1pii_A 235 IGSALMAHDDL 245 (452)
T ss_dssp ECHHHHTCSCH
T ss_pred EcHHHcCCcCH
Confidence 99999998765
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=97.11 E-value=0.013 Score=56.19 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=95.0
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
..+.||--|=|--|+-+..++... .+|+|=|-+.+ | +.+.+.++++..+ .++..+.+-+
T Consensus 102 ~v~lPvLrKDFiid~yQI~eAr~~---GADaILLI~a~-------------L--~~~~l~~l~~~A~-~lGl~~LvEV-- 160 (258)
T 4a29_A 102 SVSIPILMSDFIVKESQIDDAYNL---GADTVLLIVKI-------------L--TERELESLLEYAR-SYGMEPLILI-- 160 (258)
T ss_dssp TCSSCEEEESCCCSHHHHHHHHHH---TCSEEEEEGGG-------------S--CHHHHHHHHHHHH-HTTCCCEEEE--
T ss_pred hcCCCEeeccccccHHHHHHHHHc---CCCeeehHHhh-------------c--CHHHHHHHHHHHH-HHhHHHHHhc--
Confidence 456898777555576665554322 13433332222 1 3556667666544 4577777765
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
.+..| .+...+.|++.|-|-.|.- .+-..+.+...++...+ ++.+|+-+||.|++|+.++. ..|+|+
T Consensus 161 ----h~~~E-l~rAl~~~a~iIGINNRnL-----~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~-~~G~~a 229 (258)
T 4a29_A 161 ----NDEND-LDIALRIGARFIGIMSRDF-----ETGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELR-KLGVNA 229 (258)
T ss_dssp ----SSHHH-HHHHHHTTCSEEEECSBCT-----TTCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHH-HTTCCE
T ss_pred ----chHHH-HHHHhcCCCcEEEEeCCCc-----cccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHH-HCCCCE
Confidence 23344 4455568999998866632 22346788888888876 68889999999999999988 789999
Q ss_pred EEeccccccCccc
Q psy7343 359 VMTAEGNLYNPAL 371 (487)
Q Consensus 359 VmiGRa~l~~P~l 371 (487)
|.||.++|.+|+-
T Consensus 230 ~LVGealmr~~d~ 242 (258)
T 4a29_A 230 FLISSSLMRNPEK 242 (258)
T ss_dssp EEECHHHHHCTTH
T ss_pred EEECHHHhCCCcH
Confidence 9999999998863
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0015 Score=61.58 Aligned_cols=112 Identities=11% Similarity=0.082 Sum_probs=67.9
Q ss_pred cceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEE-ccccCCCCCCCCC
Q psy7343 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVH-GRTVDQRGMNTGL 318 (487)
Q Consensus 240 ~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vh-gRt~~~~g~~~g~ 318 (487)
..++.|+.. ..+.+.++++.+++. ++...+.+ + ...+. +-++.+.+.|+|.+.++ +.+.. ..|.
T Consensus 85 d~i~vh~~~------~~~~~~~~~~~~~~~-g~~~~~d~-l--~~~T~-~~~~~~~~~g~d~v~~~~~~~~~----~~g~ 149 (218)
T 3jr2_A 85 DWITVSAAA------HIATIAACKKVADEL-NGEIQIEI-Y--GNWTM-QDAKAWVDLGITQAIYHRSRDAE----LAGI 149 (218)
T ss_dssp SEEEEETTS------CHHHHHHHHHHHHHH-TCEEEEEC-C--SSCCH-HHHHHHHHTTCCEEEEECCHHHH----HHTC
T ss_pred CEEEEecCC------CHHHHHHHHHHHHHh-CCccceee-e--ecCCH-HHHHHHHHcCccceeeeeccccc----cCCC
Confidence 445566541 234466777777654 55554321 1 22244 34445566799988763 22111 1121
Q ss_pred -CCHHHHHHHHhh--CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 319 -ASWEHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 319 -~~~~~i~~i~~~--~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
...+.++++++. .++|+++.||| +++.+.+++ +.|||++.+||++...
T Consensus 150 ~~~~~~l~~i~~~~~~~~pi~v~GGI-~~~~~~~~~-~aGAd~vvvGsaI~~a 200 (218)
T 3jr2_A 150 GWTTDDLDKMRQLSALGIELSITGGI-VPEDIYLFE-GIKTKTFIAGRALAGA 200 (218)
T ss_dssp CSCHHHHHHHHHHHHTTCEEEEESSC-CGGGGGGGT-TSCEEEEEESGGGSHH
T ss_pred cCCHHHHHHHHHHhCCCCCEEEECCC-CHHHHHHHH-HcCCCEEEEchhhcCC
Confidence 123444555444 48999999999 588898888 7899999999987754
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0026 Score=60.62 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=56.7
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCC-CCCCHHHHHH--HHhhCCCcEEEcCCCCCHHHHHHHHHhcCCc--E
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT-GLASWEHITA--VRKALTIPVIANGNIQCLADVEACLAQTGVA--G 358 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~-g~~~~~~i~~--i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad--~ 358 (487)
.++....++...++|+|.|-.+ .|+.. +.++.+.++. +++.+++||.++|||+|.+|+.+++ +.|++ |
T Consensus 147 ~e~i~~a~ria~eaGADfVKTs------TG~~~~~gAt~~dv~l~~m~~~v~v~VKaaGGirt~~~al~~i-~aGa~RiG 219 (234)
T 1n7k_A 147 DKTLSLLVDSSRRAGADIVKTS------TGVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAV-GAGADIIG 219 (234)
T ss_dssp HHHHHHHHHHHHHTTCSEEESC------CSSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHH-HTTCSEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEeC------CCCCCCCCCCHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHH-HcCccccc
Confidence 3567778888899999999652 11122 4566666666 7777779999999999999999999 79999 5
Q ss_pred EEeccccc
Q psy7343 359 VMTAEGNL 366 (487)
Q Consensus 359 VmiGRa~l 366 (487)
+..|+.++
T Consensus 220 ~S~g~~I~ 227 (234)
T 1n7k_A 220 TSSAVKVL 227 (234)
T ss_dssp ETTHHHHH
T ss_pred hHHHHHHH
Confidence 55555443
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0023 Score=61.02 Aligned_cols=142 Identities=11% Similarity=0.141 Sum_probs=85.5
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.|+-+-+...||+.+.+.+.. + |+ ..++.|... . . +.+.++++.+++. ++.+.+-+.
T Consensus 57 ~~~~dvhLmv~dp~~~i~~~~~---a--------GA-d~itvh~Ea---~--~-~~~~~~i~~i~~~-G~k~gv~ln--- 114 (231)
T 3ctl_A 57 TKPLDCHLMVTRPQDYIAQLAR---A--------GA-DFITLHPET---I--N-GQAFRLIDEIRRH-DMKVGLILN--- 114 (231)
T ss_dssp CSCEEEEEESSCGGGTHHHHHH---H--------TC-SEEEECGGG---C--T-TTHHHHHHHHHHT-TCEEEEEEC---
T ss_pred CCcEEEEEEecCHHHHHHHHHH---c--------CC-CEEEECccc---C--C-ccHHHHHHHHHHc-CCeEEEEEE---
Confidence 6789999888888876654432 3 33 345555431 0 1 1245566666653 666666552
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
..+..+..+.+.+ ++|.|.+.+....-.|..-.+..++.++++++.. +++|.+.|||+ .+.+.++. +.|||
T Consensus 115 -p~tp~~~~~~~l~-~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~-~aGAd 190 (231)
T 3ctl_A 115 -PETPVEAMKYYIH-KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLM-AAGAD 190 (231)
T ss_dssp -TTCCGGGGTTTGG-GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHH-HHTCC
T ss_pred -CCCcHHHHHHHHh-cCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHH-HcCCC
Confidence 2233333333332 7999986433221111011233467777777654 68999999998 57788888 68999
Q ss_pred EEEec-cccccCcc
Q psy7343 358 GVMTA-EGNLYNPA 370 (487)
Q Consensus 358 ~VmiG-Ra~l~~P~ 370 (487)
.+.+| ++++..++
T Consensus 191 ~~V~G~saif~~~d 204 (231)
T 3ctl_A 191 VFIVGTSGLFNHAE 204 (231)
T ss_dssp EEEECTTTTGGGCS
T ss_pred EEEEccHHHhCCCC
Confidence 99999 98876544
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0019 Score=62.51 Aligned_cols=123 Identities=17% Similarity=0.165 Sum_probs=80.3
Q ss_pred HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecc----cccccHHHHHH
Q psy7343 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIY----QDVNKTVEYAR 292 (487)
Q Consensus 218 ~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~----~d~~~~~e~a~ 292 (487)
..++...++...|.||+-+.. |.....+++.+.+-++++++.++ -+..+|+-+. .|.+.....++
T Consensus 88 v~E~~~Av~~GAdEIDmVini----------g~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ 157 (260)
T 1p1x_A 88 LAETRAAIAYGADEVDVVFPY----------RALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASE 157 (260)
T ss_dssp HHHHHHHHHHTCSEEEEECCH----------HHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeccH----------HhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHH
Confidence 344555556668888864322 22223478888888888887763 2345555442 12222567888
Q ss_pred HHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh-------CCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA-------LTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 293 ~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~-------~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
...++|+|.|--+ .|...+.+..+.++.+++. .+++|-++|||+|.+|+.+++ +.|++
T Consensus 158 ia~eaGADfVKTS------TGf~~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i-~aga~ 222 (260)
T 1p1x_A 158 ISIKAGADFIKTS------TGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYL-AIADE 222 (260)
T ss_dssp HHHHTTCSEEECC------CSCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHH-HHHHH
T ss_pred HHHHhCCCEEEeC------CCCCCCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHH-Hhhhh
Confidence 9999999999652 1212356778766665555 379999999999999999999 45443
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0021 Score=62.82 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=78.1
Q ss_pred HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChH---HHHHHHHHHhhhccCcEEEEeecc----cccccHHHH
Q psy7343 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP---LLTNLVSSLRQAVQVPVSCKIRIY----QDVNKTVEY 290 (487)
Q Consensus 218 ~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~---~i~eiv~~v~~~~~iPV~vKiR~~----~d~~~~~e~ 290 (487)
..++...++..+|+||+-+.. |..+..+++ .+.+-+.++++.++ ...+|+-+. .|.+.....
T Consensus 109 v~E~~~Av~~GAdEIDmVini----------g~lksg~~~~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~A 177 (281)
T 2a4a_A 109 LNDTEKALDDGADEIDLVINY----------KKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIKT 177 (281)
T ss_dssp HHHHHHHHHHTCSEEEEECCH----------HHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEecch----------HhhhCCChhHHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHH
Confidence 345555566668888864322 222223677 78888888888774 245555442 122225678
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh------------CCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA------------LTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~------------~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
++...++|+|.|--+ .|...+.+..+.++.+++. .+++|-++|||+|.+|+.+++ +.|++
T Consensus 178 ~~ia~eaGADfVKTS------TGf~~~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i-~aga~ 249 (281)
T 2a4a_A 178 TLAVLNGNADFIKTS------TGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYI-LLARR 249 (281)
T ss_dssp HHHHHTTTCSEEECC------CSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHH-HHHHH
T ss_pred HHHHHHhCCCEEEeC------CCCCCCCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHH-HHhhh
Confidence 888999999999652 1112255666555444433 378999999999999999999 45544
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0023 Score=63.51 Aligned_cols=102 Identities=12% Similarity=0.201 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhhccCcEEEEeec-cccc-------ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRI-YQDV-------NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~-~~d~-------~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~ 328 (487)
+.+.++.+..+ ..++|+++.+-. +..+ +...+.++.+.+.|+|.|-++.-.. +..+++.+.++.
T Consensus 142 ~~i~~v~~~~~-~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~~-------~~g~~~~~~~vv 213 (304)
T 1to3_A 142 NMVKEFNELCH-SNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLY-------GKGARSDLLTAS 213 (304)
T ss_dssp HHHHHHHHHHH-TTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGG-------GCSCHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCcC-------CCCCHHHHHHHH
Confidence 44455555443 348999988632 1111 2245668888899999999943211 112677777776
Q ss_pred hh----CCCc-EEEcCCCCCHH----HHHHHHHhcCCcEEEeccccccC
Q psy7343 329 KA----LTIP-VIANGNIQCLA----DVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 329 ~~----~~iP-Vi~nGgI~s~~----da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+. +++| |+..||+ +.+ .+..++ +.|++||.+||++...
T Consensus 214 ~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~-~aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 214 QRLNGHINMPWVILSSGV-DEKLFPRAVRVAM-EAGASGFLAGRAVWSS 260 (304)
T ss_dssp HHHHHTCCSCEEECCTTS-CTTTHHHHHHHHH-HTTCCEEEESHHHHGG
T ss_pred HhccccCCCCeEEEecCC-CHHHHHHHHHHHH-HcCCeEEEEehHHhCc
Confidence 66 8999 9999999 453 356666 5799999999998876
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0026 Score=60.62 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=59.6
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHH
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEA 349 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~ 349 (487)
++|++.-+ .+..|+. ...+.|+|.|.+..- + ..| ..++++.++..+ ++|++..|||. ++++.+
T Consensus 127 gi~~ipGv------~TptEi~-~A~~~Gad~vK~FPa---~---~~g--G~~~lkal~~p~p~ip~~ptGGI~-~~n~~~ 190 (232)
T 4e38_A 127 GIDIVPGV------NNPSTVE-AALEMGLTTLKFFPA---E---ASG--GISMVKSLVGPYGDIRLMPTGGIT-PSNIDN 190 (232)
T ss_dssp TCEEECEE------CSHHHHH-HHHHTTCCEEEECST---T---TTT--HHHHHHHHHTTCTTCEEEEBSSCC-TTTHHH
T ss_pred CCCEEcCC------CCHHHHH-HHHHcCCCEEEECcC---c---ccc--CHHHHHHHHHHhcCCCeeeEcCCC-HHHHHH
Confidence 66665533 3455544 456789999988432 1 111 258899999876 79999999995 899999
Q ss_pred HHHhcCCcEEEeccccccCccccc
Q psy7343 350 CLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 350 ~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
.+ +.|+.++.+|.. +.++.++.
T Consensus 191 ~l-~aGa~~~vgGs~-l~~~~~i~ 212 (232)
T 4e38_A 191 YL-AIPQVLACGGTW-MVDKKLVT 212 (232)
T ss_dssp HH-TSTTBCCEEECG-GGCHHHHH
T ss_pred HH-HCCCeEEEECch-hcChHHhh
Confidence 99 789998877754 44555544
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=60.47 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc-----C-------CC--------------
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV-----D-------QR-------------- 312 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~-----~-------~~-------------- 312 (487)
+.++++.+++. +.||++..-+-.....-.+..+.++..++|+|+= .+.. . |+
T Consensus 45 L~~iv~~ik~~-gK~vivh~DlI~GLs~d~~ai~fL~~~~pdGIIs-Tk~~~i~~Akk~GL~tIqR~FliDs~al~~~~~ 122 (188)
T 1vkf_A 45 LKFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFVKKAGADGIIT-IKPKNYVVAKKNGIPAVLRFFALDSKAVERGIE 122 (188)
T ss_dssp HHHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEE-SCHHHHHHHHHTTCCEEEEEECCSHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCeEEEecCcccccCCCHHHHHHHHhcCCCEEEc-CcHHHHHHHHHcCCEEeeEEEEEEeHHHhhhhh
Confidence 78888888888 9999998755333333344555557789999864 3220 0 00
Q ss_pred ------C----CCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 313 ------G----MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 313 ------g----~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+ -+.|..-.+.++++ +++|+|+.|+|+|.||+.+ + +.||++|..|+--+++
T Consensus 123 ~I~~~kPD~iEiLPg~v~p~~I~~v---~~~PiIaGGlI~t~edv~~-l-~aGA~aIsTs~~~LW~ 183 (188)
T 1vkf_A 123 QIETLGVDVVEVLPGAVAPKVARKI---PGRTVIAAGLVETEEEARE-I-LKHVSAISTSSRILWK 183 (188)
T ss_dssp HHHHHTCSEEEEESGGGHHHHHTTS---TTSEEEEESCCCSHHHHHH-H-TTTSSEEEECCHHHHT
T ss_pred hccccCCCeEeecCCCchHHHHHHh---cCCCEEEECCcCCHHHHHH-H-HCCCeEEEeCCHHHhC
Confidence 0 01111112333333 6889999999999999999 8 8999999999766654
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0049 Score=60.87 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=65.4
Q ss_pred HHHHHHHHhhhccC-cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcE
Q psy7343 259 LTNLVSSLRQAVQV-PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPV 335 (487)
Q Consensus 259 i~eiv~~v~~~~~i-PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPV 335 (487)
+.+-++++++..+- +|.+-+ ++..+ ++...++|+|+|+++. .+.+.++++++.+ +++|
T Consensus 195 i~~ai~~~r~~~~~~kI~vev------~tlee-~~eA~~aGaD~I~ld~------------~~~e~l~~~v~~~~~~~~I 255 (296)
T 1qap_A 195 VRQAVEKAFWLHPDVPVEVEV------ENLDE-LDDALKAGADIIMLDN------------FNTDQMREAVKRVNGQARL 255 (296)
T ss_dssp HHHHHHHHHHHSTTSCEEEEE------SSHHH-HHHHHHTTCSEEEESS------------CCHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHHhCCCCcEEEEe------CCHHH-HHHHHHcCCCEEEECC------------CCHHHHHHHHHHhCCCCeE
Confidence 34555666665532 555544 34444 4444578999999932 3456777777766 6999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.++||| +.+.+.++. ++|+|++.+|.....-|++
T Consensus 256 ~ASGGI-t~~~i~~~a-~~GvD~isvGsli~~a~~~ 289 (296)
T 1qap_A 256 EVSGNV-TAETLREFA-ETGVDFISVGALTKHVRAL 289 (296)
T ss_dssp EECCCS-CHHHHHHHH-HTTCSEEECSHHHHEEECC
T ss_pred EEECCC-CHHHHHHHH-HcCCCEEEEeHHHcCCCCC
Confidence 999999 999999999 7999999999966555544
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0012 Score=67.96 Aligned_cols=125 Identities=9% Similarity=-0.017 Sum_probs=90.8
Q ss_pred HHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccc--cCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 216 KNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 216 ~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l--~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
+.+.+.++.+ ++.|+.+.++.|... ..+ .++.+...++++++++++ ++++.+..--+++.++..++
T Consensus 150 e~~~~~a~~~~~~Gf~~vKik~g~~~---------~~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~ 220 (392)
T 3p3b_A 150 ALMQEEAMQGYAKGQRHFKIKVGRGG---------RHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEV 220 (392)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCHHH---------HTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEECcCcCc---------ccCCccccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 7777766654 445888888766411 111 124566667888888876 46777655445677778888
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh-----CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA-----LTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~-----~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.++++|++.|- + + .. .+++..+++++. +++||++.+ +.+.++++++++...+|.|++
T Consensus 221 ~~~l~~~~i~~iE-------~-P-~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~i 284 (392)
T 3p3b_A 221 LAALSDVNLYWLE-------E-A-FH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQY 284 (392)
T ss_dssp HHHTTTSCEEEEE-------C-S-SS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECC
T ss_pred HHHHHhcCCCEEe-------c-C-Cc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEe
Confidence 9999988887653 2 1 22 578899999998 899999999 999999999997667898865
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.011 Score=55.58 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=60.9
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHH
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVE 348 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~ 348 (487)
.+++++.-. .+..++ ....+.|+|.|.++.- .. .. -.+.++.+++.+ ++|+++.|||+ .+++.
T Consensus 108 ~g~~~i~G~------~t~~e~-~~A~~~Gad~v~~Fpa--~~---~g---G~~~lk~i~~~~~~ipvvaiGGI~-~~n~~ 171 (214)
T 1wbh_A 108 GTIPLIPGI------STVSEL-MLGMDYGLKEFKFFPA--EA---NG---GVKALQAIAGPFSQVRFCPTGGIS-PANYR 171 (214)
T ss_dssp SSSCEEEEE------SSHHHH-HHHHHTTCCEEEETTT--TT---TT---HHHHHHHHHTTCTTCEEEEBSSCC-TTTHH
T ss_pred hCCCEEEec------CCHHHH-HHHHHCCCCEEEEecC--cc---cc---CHHHHHHHhhhCCCCeEEEECCCC-HHHHH
Confidence 466666532 244444 5566789999999541 00 11 257899999988 89999999995 68899
Q ss_pred HHHHhcCCcEEEeccccccCccc
Q psy7343 349 ACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++++..|+++|. |+++...+.+
T Consensus 172 ~~l~agg~~~v~-gS~i~~~~~~ 193 (214)
T 1wbh_A 172 DYLALKSVLCIG-GSWLVPADAL 193 (214)
T ss_dssp HHHTSTTBSCEE-EGGGSCHHHH
T ss_pred HHHhcCCCeEEE-eccccChhhh
Confidence 999434999999 9887776655
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.003 Score=61.73 Aligned_cols=133 Identities=16% Similarity=0.159 Sum_probs=85.2
Q ss_pred HHHHHHHhhCCcCcEEEe--ecCCCcceeeccCcccccc---CChHHHHHHHHHHhhhccCcEEEEeeccc----ccccH
Q psy7343 217 NLTEAAKLAEPHCDGIDI--NIGCPQMVAKRGHYGAYLQ---DDWPLLTNLVSSLRQAVQVPVSCKIRIYQ----DVNKT 287 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~Idi--N~GcP~~i~~~gr~G~~l~---~d~~~i~eiv~~v~~~~~iPV~vKiR~~~----d~~~~ 287 (487)
...++...+++.+|.||+ |.|. .+. .+++.+.+-++++++.++ +..+|+-+.. +.+..
T Consensus 102 K~~Ea~~Av~~GAdEIDmVinig~------------lk~~~~g~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i 168 (297)
T 4eiv_A 102 VSLEAVGALKDGADEIECLIDWRR------------MNENVADGESRIRLLVSEVKKVVG-PKTLKVVLSGGELQGGDII 168 (297)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTHH------------HHHCHHHHHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCCHHHH
T ss_pred HHHHHHHHHHcCCCEEEeeeeHHH------------HhcccCCcHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHH
Confidence 445666677777888885 4332 112 378888888888888874 5567765532 22224
Q ss_pred HHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC------------------------CCcEEEc-CCCC
Q psy7343 288 VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL------------------------TIPVIAN-GNIQ 342 (487)
Q Consensus 288 ~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~------------------------~iPVi~n-GgI~ 342 (487)
..+++...++|+|+|--+ . |...+.+..+.++.+++.+ ++-|=++ |||+
T Consensus 169 ~~A~~ia~~AGADFVKTS----T--Gf~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIr 242 (297)
T 4eiv_A 169 SRAAVAALEGGADFLQTS----S--GLGATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVH 242 (297)
T ss_dssp HHHHHHHHHHTCSEEECC----C--SSSSCCCCHHHHHHHHHHHHHHHCC------------------CCEEEEECTTCC
T ss_pred HHHHHHHHHhCCCEEEcC----C--CCCCCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCC
Confidence 567788889999999641 1 2223456666555554433 4778899 9999
Q ss_pred CHHHHHHHHHhcCCcEEEeccccccCccccc
Q psy7343 343 CLADVEACLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
|.+|+.++++ ...+ +|...+ +|..|+
T Consensus 243 t~e~A~~~i~-~~~e---lG~~wl-~~~~fR 268 (297)
T 4eiv_A 243 MAETADFLMQ-MIFE---NGPRSI-VRDKFR 268 (297)
T ss_dssp HHHHHHHHHH-HHHH---HCGGGC-STTTEE
T ss_pred CHHHHHHHHH-HHHH---hCcccc-CCCceE
Confidence 9999999995 2222 454433 455554
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0052 Score=60.65 Aligned_cols=148 Identities=14% Similarity=0.187 Sum_probs=93.7
Q ss_pred CCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCc-cccccCChHHHHHHHHHHhhh-ccCcEEEE
Q psy7343 203 DRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY-GAYLQDDWPLLTNLVSSLRQA-VQVPVSCK 277 (487)
Q Consensus 203 ~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~-G~~l~~d~~~i~eiv~~v~~~-~~iPV~vK 277 (487)
+.||++-+- | .++++..+.++.+++. +.+|.|--+.-.+ +.|.. |..+. +.+...+-+++.+++ .+.++.++
T Consensus 83 ~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k--~cGh~~gk~l~-~~~e~~~ri~Aa~~A~~~~~~~I~ 159 (298)
T 3eoo_A 83 NLPLLVDIDTGWGGAFNIARTIRSFIKAGVGAVHLEDQVGQK--RCGHRPGKECV-PAGEMVDRIKAAVDARTDETFVIM 159 (298)
T ss_dssp CSCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEEECBCCCC--CTTCCCCCCBC-CHHHHHHHHHHHHHHCSSTTSEEE
T ss_pred CCeEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCc--ccCCCCCCeec-CHHHHHHHHHHHHHhccCCCeEEE
Confidence 579988865 3 3788888888877665 7888887554111 22222 23343 344333333344433 35678888
Q ss_pred eecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc---CCCCCHHHHHHH
Q psy7343 278 IRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN---GNIQCLADVEAC 350 (487)
Q Consensus 278 iR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n---GgI~s~~da~~~ 350 (487)
.|.. .+.++.++-++...++|+|.|.+++. .+.+.++++.+.+++|+.+| ||-...-+..++
T Consensus 160 ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~~~-----------~~~ee~~~~~~~~~~Pl~~n~~~~g~tp~~~~~eL 228 (298)
T 3eoo_A 160 ARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAM-----------KTLDDYRRFKEAVKVPILANLTEFGSTPLFTLDEL 228 (298)
T ss_dssp EEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC-----------CSHHHHHHHHHHHCSCBEEECCTTSSSCCCCHHHH
T ss_pred EeehhhhhcCHHHHHHHHHhhHhcCCCEEEeCCC-----------CCHHHHHHHHHHcCCCeEEEeccCCCCCCCCHHHH
Confidence 7763 13445677778888999999999654 25678899999999999876 332111123444
Q ss_pred HHhcCCcEEEecccc
Q psy7343 351 LAQTGVAGVMTAEGN 365 (487)
Q Consensus 351 l~~~Gad~VmiGRa~ 365 (487)
- +.|+..|..|-.+
T Consensus 229 ~-~lGv~~v~~~~~~ 242 (298)
T 3eoo_A 229 K-GANVDIALYCCGA 242 (298)
T ss_dssp H-HTTCCEEEECSHH
T ss_pred H-HcCCeEEEEchHH
Confidence 4 6899999988543
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0033 Score=63.96 Aligned_cols=95 Identities=21% Similarity=0.395 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP 334 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP 334 (487)
+++...+.++.+++...+|+.+++-. .. .+.++.+.++|+|.|.|+.- . + . .....+.++++++.+++|
T Consensus 79 s~e~~~~~I~~vk~~~~~pvga~ig~----~~-~e~a~~l~eaGad~I~ld~a---~-G-~-~~~~~~~i~~i~~~~~~~ 147 (361)
T 3khj_A 79 DMESQVNEVLKVKNSGGLRVGAAIGV----NE-IERAKLLVEAGVDVIVLDSA---H-G-H-SLNIIRTLKEIKSKMNID 147 (361)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECT----TC-HHHHHHHHHTTCSEEEECCS---C-C-S-BHHHHHHHHHHHHHCCCE
T ss_pred CHHHHHHHHHHHHhccCceEEEEeCC----CH-HHHHHHHHHcCcCeEEEeCC---C-C-C-cHHHHHHHHHHHHhcCCc
Confidence 56777788888887778999999832 23 78888999999999998321 0 0 1 011247888888888999
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
|++ |++.|.++++++. +.|+|+|.+|
T Consensus 148 Viv-g~v~t~e~A~~l~-~aGaD~I~VG 173 (361)
T 3khj_A 148 VIV-GNVVTEEATKELI-ENGADGIKVG 173 (361)
T ss_dssp EEE-EEECSHHHHHHHH-HTTCSEEEEC
T ss_pred EEE-ccCCCHHHHHHHH-HcCcCEEEEe
Confidence 997 6789999999988 7899999996
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0018 Score=65.39 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=78.9
Q ss_pred hhcChhHHHHHHh--cCCCCCCeeeeecc-------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCC
Q psy7343 186 FIADKKLRQEILM--STPEDRPLIIQFCG-------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDD 255 (487)
Q Consensus 186 Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g-------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d 255 (487)
+.+......++++ +...+.||+|+|.. .+.+++.++++.+++. .|.|+++.|.... .. ...+. ..+
T Consensus 190 lenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~-~~-~~~~~--~~~ 265 (340)
T 3gr7_A 190 PENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVP-AR-MNVYP--GYQ 265 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSC-CC-CCCCT--TTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccC-CC-CCCCc--ccc
Confidence 3344444455553 11127899999974 3577889999998887 8999998664111 00 00010 013
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
++ +++.+++.+++||++++ ++.+..++.+.+++.++|.|++ ||.... +-+++.++++.++
T Consensus 266 ~~----~~~~ik~~~~iPVi~~G----gI~s~e~a~~~L~~G~aD~V~i-GR~~la--------nPdl~~ki~~~l~ 325 (340)
T 3gr7_A 266 VP----FAELIRREADIPTGAVG----LITSGWQAEEILQNGRADLVFL-GRELLR--------NPYWPYAAARELG 325 (340)
T ss_dssp HH----HHHHHHHHTTCCEEEES----SCCCHHHHHHHHHTTSCSEEEE-CHHHHH--------CTTHHHHHHHHTT
T ss_pred HH----HHHHHHHHcCCcEEeeC----CCCCHHHHHHHHHCCCeeEEEe-cHHHHh--------CchHHHHHHHHCC
Confidence 33 45557777899999998 5556777777776656999999 885321 2244667666553
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.018 Score=56.20 Aligned_cols=139 Identities=19% Similarity=0.195 Sum_probs=96.7
Q ss_pred CCCeeeeec---cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc---cCcEE
Q psy7343 203 DRPLIIQFC---GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV---QVPVS 275 (487)
Q Consensus 203 ~~Pv~Vqi~---g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~---~iPV~ 275 (487)
+.||++-+- |.++++..+.++.+.++ +.+|.|--+.. |+ |..+ .+.+...+-+++++++. ++|+.
T Consensus 76 ~~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaagv~iED~~~-----~~--~k~l-~~~~e~~~~I~aa~~a~~~~g~~~~ 147 (275)
T 2ze3_A 76 AIPVNADIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATG-----LT--PTEL-YDLDSQLRRIEAARAAIDASGVPVF 147 (275)
T ss_dssp SSCEEEECTTCSSSSHHHHHHHHHHHHHTTCSEEEEECBCS-----SS--SSCB-CCHHHHHHHHHHHHHHHHHHTSCCE
T ss_pred CCCEEeecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCcC-----CC--CCcc-CCHHHHHHHHHHHHHhHhhcCCCeE
Confidence 479998875 35788888888776666 77887775541 21 3333 35666666666666553 78999
Q ss_pred EEeeccc-----------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC--CCC
Q psy7343 276 CKIRIYQ-----------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG--NIQ 342 (487)
Q Consensus 276 vKiR~~~-----------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG--gI~ 342 (487)
++.|... ..++..+-++.++++|+|.|.+++. .+.+.++++.+.+++|+-.++ +..
T Consensus 148 i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~-----------~~~~~~~~i~~~~~~P~n~~~~~~~~ 216 (275)
T 2ze3_A 148 LNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLA-----------LQSQDIRALADALRVPLNVMAFPGSP 216 (275)
T ss_dssp EEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTC-----------CCHHHHHHHHHHCSSCEEEECCTTSC
T ss_pred EEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCC-----------CCHHHHHHHHHhcCCCEEEecCCCCC
Confidence 9888742 2356677778889999999998432 456789999999999987664 344
Q ss_pred CHHHHHHHHHhcCCcEEEeccc
Q psy7343 343 CLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiGRa 364 (487)
+. .++- +.|+..|..|-.
T Consensus 217 ~~---~eL~-~lGv~~v~~~~~ 234 (275)
T 2ze3_A 217 VP---RALL-DAGAARVSFGQS 234 (275)
T ss_dssp CH---HHHH-HTTCSEEECTTH
T ss_pred CH---HHHH-HcCCcEEEEChH
Confidence 44 3443 689999988743
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0066 Score=61.24 Aligned_cols=110 Identities=15% Similarity=0.215 Sum_probs=71.9
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeecc-------CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccC
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFCG-------NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g-------~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~ 254 (487)
+.+......++++ ....+.||+|+|.. .+.+++.++++.+++..|.|++..|...........+ .
T Consensus 189 lenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~vd~i~vs~g~~~~~~~~~~~~----~ 264 (343)
T 3kru_A 189 IENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDKVDLIDVSSGGLLNVDINLYPG----Y 264 (343)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTTCSEEEEECCCSSCCCCCCCTT----T
T ss_pred hHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhccccEEeccCCceEeeeecccCc----e
Confidence 4444444555553 34457799999874 3478889999988777899999655411100000001 1
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
+++ +++.+++.+++||++++ ++.+..++.+.+++.++|.|++ ||.
T Consensus 265 ~~~----~~~~ir~~~~iPVi~~G----gi~t~e~Ae~~l~~G~aD~V~i-GR~ 309 (343)
T 3kru_A 265 QVK----YAETIKKRCNIKTSAVG----LITTQELAEEILSNERADLVAL-GRE 309 (343)
T ss_dssp THH----HHHHHHHHHTCEEEEES----SCCCHHHHHHHHHTTSCSEEEE-SHH
T ss_pred eeh----HHHHHHHhcCcccceee----eeeHHHHHHHHHhchhhHHHHH-HHH
Confidence 333 44557777899999998 5556777777777766999999 985
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.039 Score=54.10 Aligned_cols=149 Identities=16% Similarity=0.142 Sum_probs=97.5
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSC 276 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~v 276 (487)
..+.||++-+- | .++++..+.++.+.++ +++|.|--+...+ +.|...+. +.+.+...+-+++++++- +.++.+
T Consensus 80 ~~~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~pK--rcgh~~gk-l~~~~e~~~~I~aa~~a~~~~~~~i 156 (287)
T 3b8i_A 80 VARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPA--QFGRKSTD-LICVEEGVGKIRAALEARVDPALTI 156 (287)
T ss_dssp TCSSCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEECBCCSC--CTTTCTTC-BCCHHHHHHHHHHHHHHCCSTTSEE
T ss_pred cCCCCEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEcCCCCcc--ccCCCCCC-ccCHHHHHHHHHHHHHcCCCCCcEE
Confidence 34679888764 2 3788888888776666 8888887664212 22333334 456666666666666553 445666
Q ss_pred Eeeccc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc-CCCCCHHHHHHHHH
Q psy7343 277 KIRIYQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN-GNIQCLADVEACLA 352 (487)
Q Consensus 277 KiR~~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n-GgI~s~~da~~~l~ 352 (487)
+.|... +.++..+-++.++++|+|.|.+++- .+.+.++++.+.+++|++.. ||-...-+..++-
T Consensus 157 ~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~~-----------~~~~~~~~i~~~~~~P~ii~~~g~~~~~~~~eL~- 224 (287)
T 3b8i_A 157 IARTNAELIDVDAVIQRTLAYQEAGADGICLVGV-----------RDFAHLEAIAEHLHIPLMLVTYGNPQLRDDARLA- 224 (287)
T ss_dssp EEEEETTTSCHHHHHHHHHHHHHTTCSEEEEECC-----------CSHHHHHHHHTTCCSCEEEECTTCGGGCCHHHHH-
T ss_pred EEechhhhcCHHHHHHHHHHHHHcCCCEEEecCC-----------CCHHHHHHHHHhCCCCEEEeCCCCCCCCCHHHHH-
Confidence 666532 1245777788999999999999643 34678999999999999842 3222112334444
Q ss_pred hcCCcEEEeccc
Q psy7343 353 QTGVAGVMTAEG 364 (487)
Q Consensus 353 ~~Gad~VmiGRa 364 (487)
+.|+..|..|-.
T Consensus 225 ~lGv~~v~~~~~ 236 (287)
T 3b8i_A 225 RLGVRVVVNGHA 236 (287)
T ss_dssp HTTEEEEECCCH
T ss_pred HcCCcEEEEChH
Confidence 689999988854
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0051 Score=63.73 Aligned_cols=149 Identities=9% Similarity=0.059 Sum_probs=101.3
Q ss_pred CCCeeeeeccCCHHHHHHHHH-hhCCcCcEEEeecCCCcceee-----ccCccccc---cCChHHHHHHHHHHhhhc--c
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAK-----RGHYGAYL---QDDWPLLTNLVSSLRQAV--Q 271 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~-----~gr~G~~l---~~d~~~i~eiv~~v~~~~--~ 271 (487)
..|+.....+.+++++.+.++ .+++.+..+.+..|.+..... ........ ..+.+...+.++++++++ +
T Consensus 142 ~v~~y~~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~~ 221 (421)
T 4hnl_A 142 AIPAYTHAVADNLDDLYHEIDRFLAAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGNQ 221 (421)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccceecccCCCCHHHHHHHHHHHHHhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCCC
Confidence 345555555667888776655 445568999998886321100 00001111 122455567777888877 4
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l 351 (487)
+.+.+..--+++..+..++++.++++++..+-= + ....+++..+++++.+++||.+.-.+.+..++.+++
T Consensus 222 ~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEe--------P--~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i 291 (421)
T 4hnl_A 222 FQMLHDVHERLHPNQAIQFAKAAEPYQLFFLED--------I--LPPDQSHWLTQLRSQSATPIATGELFNNPMEWQELV 291 (421)
T ss_dssp SEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC--------C--SCGGGGGGHHHHHTTCCCCEEECTTCCSGGGTHHHH
T ss_pred ceEeccccccCCHHHHHHHHHHhhhhhhccccc--------C--CcccchHHHHHHHhcCCCCeecCcceehhHHHHHHH
Confidence 555554434567778899999999999887731 1 123468889999999999999999999999999999
Q ss_pred HhcCCcEEEe
Q psy7343 352 AQTGVAGVMT 361 (487)
Q Consensus 352 ~~~Gad~Vmi 361 (487)
+...+|.|++
T Consensus 292 ~~~a~d~v~~ 301 (421)
T 4hnl_A 292 KNRQIDFMRA 301 (421)
T ss_dssp HTTCCSEECC
T ss_pred hcCCceEEEe
Confidence 7777888764
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.017 Score=54.12 Aligned_cols=139 Identities=13% Similarity=0.042 Sum_probs=82.0
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
.++=+|+. ..++.+.+. +.++ |+ ..++.|...| .+.+.++++.+++. +.++.+.+--..+
T Consensus 59 v~lD~kl~-dip~t~~~~---~~~~--------Ga-d~itvh~~~g------~~~l~~~~~~~~~~-g~~~~~~ll~~~t 118 (216)
T 1q6o_A 59 VLADAKIA-DAGKILSRM---CFEA--------NA-DWVTVICCAD------INTAKGALDVAKEF-NGDVQIELTGYWT 118 (216)
T ss_dssp EEEEEEEC-SCHHHHHHH---HHHT--------TC-SEEEEETTSC------HHHHHHHHHHHHHT-TCEEEEEECSCCC
T ss_pred EEEEEEec-ccHHHHHHH---HHhC--------CC-CEEEEeccCC------HHHHHHHHHHHHHc-CCCceeeeeeCCC
Confidence 34456765 356766552 2233 33 3455555322 33455666666653 6666554310111
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
..-.+.+++.|.+.+.+|--.-....++.| ..+.++++++.. ++||++.|||+ ++.+.+++ +.|||++.+
T Consensus 119 ----~~~~~~l~~~~~~~~vl~~a~~~~~~G~~g--~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~-~aGad~ivv 190 (216)
T 1q6o_A 119 ----WEQAQQWRDAGIGQVVYHRSRDAQAAGVAW--GEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFK-GIPIHVFIA 190 (216)
T ss_dssp ----HHHHHHHHHTTCCEEEEECCHHHHHTTCCC--CHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGT-TSCCSEEEE
T ss_pred ----hhhHHHHHhcCcHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHH-HcCCCEEEE
Confidence 223345566787777664211111122333 356677777765 68899999998 77788888 789999999
Q ss_pred ccccccCcc
Q psy7343 362 AEGNLYNPA 370 (487)
Q Consensus 362 GRa~l~~P~ 370 (487)
||++...++
T Consensus 191 G~~I~~a~d 199 (216)
T 1q6o_A 191 GRSIRDAAS 199 (216)
T ss_dssp SHHHHTSSC
T ss_pred eehhcCCCC
Confidence 999886543
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.013 Score=59.43 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=90.6
Q ss_pred CCeeeeeccCCHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIY 281 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~ 281 (487)
.|+...+...+++++.+.++. +++.+..+.+..|. .+++.-.+.++++++.+ ++++.+...-+
T Consensus 133 v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iK~Kvg~---------------~~~~~d~~~v~avr~~~~~~~l~vDaN~~ 197 (365)
T 3ik4_A 133 LETDMTITAGDEVHAAASAKAILARGIKSIKVKTAG---------------VDVAYDLARLRAIHQAAPTAPLIVDGNCG 197 (365)
T ss_dssp EEBCEEECCSCHHHHHHHHHHHHHTTCCCEEEECCS---------------SCHHHHHHHHHHHHHHSSSCCEEEECTTC
T ss_pred eeeeEEecCCCHHHHHHHHHHHHHcCCCEEEEEeCC---------------CCHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 344445555688888776654 44446555555443 13555566677777776 34444433335
Q ss_pred cccccHHHHHHHH--HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 282 QDVNKTVEYARML--ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 282 ~d~~~~~e~a~~l--e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
|+..+..++++.+ ++.++.+|- | + . ...+++..+++++.+++||.+...+.+..++.++++...+|.|
T Consensus 198 ~~~~~A~~~~~~L~~~~~~i~~iE-------e-P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v 267 (365)
T 3ik4_A 198 YDVERALAFCAACKAESIPMVLFE-------Q-P-L-PREDWAGMAQVTAQSGFAVAADESARSAHDVLRIAREGTASVI 267 (365)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEE-------C-C-S-CTTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHHTCCSEE
T ss_pred CCHHHHHHHHHHHhhCCCCceEEE-------C-C-C-CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEE
Confidence 6677788888888 555555443 1 1 1 2347899999999999999999999999999999977778988
Q ss_pred Eec
Q psy7343 360 MTA 362 (487)
Q Consensus 360 miG 362 (487)
++=
T Consensus 268 ~ik 270 (365)
T 3ik4_A 268 NIK 270 (365)
T ss_dssp EEC
T ss_pred EEc
Confidence 753
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.031 Score=52.15 Aligned_cols=182 Identities=11% Similarity=0.117 Sum_probs=103.2
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN 235 (487)
.|+++..=...+.+.|++.+.--+...+.=.-+++...++....+. ....|-++ ..++++..+.++.+. .|.|+||
T Consensus 7 CGit~~eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~~-~~~~VgVfvn~~~~~i~~~~~~~~--ld~vQLH 83 (205)
T 1nsj_A 7 CGITNLEDALFSVESGADAVGFVFYPKSKRYISPEDARRISVELPP-FVFRVGVFVNEEPEKILDVASYVQ--LNAVQLH 83 (205)
T ss_dssp CCCCSHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCS-SSEEEEEESSCCHHHHHHHHHHHT--CSEEEEC
T ss_pred CCCCcHHHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCCC-CCCEEEEEeCCCHHHHHHHHHhhC--CCEEEEC
Confidence 4566554445666788865321111111111134455555544332 22233334 456666666665442 4555555
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~ 315 (487)
|. .+++.+.+ +++ ++|++--+++. +..++ ..+.++.+|++.+.+... ..|+.
T Consensus 84 ----------G~------e~~~~~~~----l~~--~~~vika~~v~----~~~~l-~~~~~~~~d~~LlD~~~~-~~GGt 135 (205)
T 1nsj_A 84 ----------GE------EPIELCRK----IAE--RILVIKAVGVS----NERDM-ERALNYREFPILLDTKTP-EYGGS 135 (205)
T ss_dssp ----------SC------CCHHHHHH----HHT--TSEEEEEEEES----SHHHH-HHHGGGTTSCEEEEESCS-SSSSC
T ss_pred ----------CC------CCHHHHHH----Hhc--CCCEEEEEEcC----CHHHH-HHHHHcCCCEEEECCCCC-CCCCC
Confidence 32 34555443 332 46787666553 22333 233444599999965433 22333
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 316 ~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
....+|+.++.++ ..+.|++.+||+ +++.+.++++..++.||-+.+|.-..|-.
T Consensus 136 G~~fdw~~l~~~~-~~~~p~~LAGGL-~peNV~~ai~~~~p~gVDvsSGvE~~pG~ 189 (205)
T 1nsj_A 136 GKTFDWSLILPYR-DRFRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPGK 189 (205)
T ss_dssp CSCCCGGGTGGGG-GGSSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGEEETTE
T ss_pred CCccCHHHHHhhh-cCCCcEEEECCC-CHHHHHHHHHhcCCCEEEECCceecCCCC
Confidence 3356898776542 337899999999 57888888766799999999998865643
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0029 Score=61.81 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=62.8
Q ss_pred HHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----C
Q psy7343 260 TNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-----T 332 (487)
Q Consensus 260 ~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-----~ 332 (487)
.+-++.+++..+ .++.+-. ++..+ ++...++|+|+|+++.- +.+.++++++.+ +
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev------~tlee-~~~A~~aGaD~I~ld~~------------~~~~l~~~v~~l~~~~~~ 229 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIEC------ESFEE-AKNAMNAGADIVMCDNL------------SVLETKEIAAYRDAHYPF 229 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEE------SSHHH-HHHHHHHTCSEEEEETC------------CHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCCCceEEEEc------CCHHH-HHHHHHcCCCEEEECCC------------CHHHHHHHHHHhhccCCC
Confidence 455666666654 3566644 34444 44444689999999431 234555444433 4
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+||.++||| +.+.+.++. ++|+|++.+|+.....|++
T Consensus 230 ~~i~AsGGI-~~~ni~~~~-~aGaD~i~vGs~i~~a~~~ 266 (273)
T 2b7n_A 230 VLLEASGNI-SLESINAYA-KSGVDAISVGALIHQATFI 266 (273)
T ss_dssp CEEEEESSC-CTTTHHHHH-TTTCSEEECTHHHHTCCCC
T ss_pred cEEEEECCC-CHHHHHHHH-HcCCcEEEEcHHhcCCCCC
Confidence 899999999 889999998 8999999999987766654
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.071 Score=52.37 Aligned_cols=149 Identities=14% Similarity=0.079 Sum_probs=93.5
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCcc--ccccCChHHHHHHHHHHhhhc-cCcE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYG--AYLQDDWPLLTNLVSSLRQAV-QVPV 274 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G--~~l~~d~~~i~eiv~~v~~~~-~iPV 274 (487)
..+.||++-+- | .++++..+.++.+.++ +.+|.|--+.- ..+.|..| +.-+...+...+-+++++++. ..++
T Consensus 73 ~~~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~--~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~ 150 (290)
T 2hjp_A 73 TVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTF--PKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDF 150 (290)
T ss_dssp TCSSCEEEECTTTTSSHHHHHHHHHHHHHHTCSEEEEECBCS--SCCC-------CCBCCHHHHHHHHHHHHHHCSSTTS
T ss_pred cCCCCEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEcCCCC--CccccccccCCCcccCHHHHHHHHHHHHHhcccCCc
Confidence 34689888764 3 3788888888776666 78888876641 12223333 222234444344444454442 3456
Q ss_pred EEEeecccc-----cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC--CcEEEc---CCCCCH
Q psy7343 275 SCKIRIYQD-----VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT--IPVIAN---GNIQCL 344 (487)
Q Consensus 275 ~vKiR~~~d-----~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~--iPVi~n---GgI~s~ 344 (487)
.++.|.... .++..+-++.++++|+|.|.++++. .+.+.++++.+.++ +|+++| +...+.
T Consensus 151 ~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~----------~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~ 220 (290)
T 2hjp_A 151 VVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ----------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTE 220 (290)
T ss_dssp EEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCC----------SSSHHHHHHHHHCCCSSCEEECGGGCTTSCH
T ss_pred EEEEeehHhhccccHHHHHHHHHHHHHcCCcEEEeCCCC----------CCHHHHHHHHHHcCCCCCEEEeccCCCCCCH
Confidence 666665322 3567777889999999999996642 34567889999998 999987 323343
Q ss_pred HHHHHHHHhcC-CcEEEecccc
Q psy7343 345 ADVEACLAQTG-VAGVMTAEGN 365 (487)
Q Consensus 345 ~da~~~l~~~G-ad~VmiGRa~ 365 (487)
.++- +.| +..|..|-.+
T Consensus 221 ---~eL~-~lG~v~~v~~~~~~ 238 (290)
T 2hjp_A 221 ---ADIA-ALSKVGIVIYGNHA 238 (290)
T ss_dssp ---HHHH-TCTTEEEEEECSHH
T ss_pred ---HHHH-hcCCeeEEEechHH
Confidence 3444 789 9999988543
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.03 Score=55.19 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=91.0
Q ss_pred CCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCcc---ccccCChHHHHHHHHHHhhhc-cCcE
Q psy7343 202 EDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYG---AYLQDDWPLLTNLVSSLRQAV-QVPV 274 (487)
Q Consensus 202 ~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G---~~l~~d~~~i~eiv~~v~~~~-~iPV 274 (487)
.+.||++-+- | .++++..+.++.+.++ +.+|.|--+.. ..+.|..| ..+. ..+...+-+++++++. +.++
T Consensus 78 ~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iED~~~--~k~cgH~gg~~k~l~-p~~e~~~rI~Aa~~a~~~~~~ 154 (295)
T 1s2w_A 78 SDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLF--PKTNSLHDGRAQPLA-DIEEFALKIKACKDSQTDPDF 154 (295)
T ss_dssp CSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC----------CTTCCBC-CHHHHHHHHHHHHHHCSSTTC
T ss_pred CCCCEEecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCC--CccccccCCCCCccc-CHHHHHHHHHHHHHhcccCCc
Confidence 4689888875 3 3677777777766665 88888876642 12222223 2333 3443334444444443 4556
Q ss_pred EEEeecccc-----cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC--CcEEEcCC---CCCH
Q psy7343 275 SCKIRIYQD-----VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT--IPVIANGN---IQCL 344 (487)
Q Consensus 275 ~vKiR~~~d-----~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~--iPVi~nGg---I~s~ 344 (487)
.+..|.... .++..+-++.++++|+|.|.+++. .++.+.++++.+.++ +|+++|-+ -.+
T Consensus 155 ~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~----------~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~- 223 (295)
T 1s2w_A 155 CIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSK----------KADPSDIEAFMKAWNNQGPVVIVPTKYYKTP- 223 (295)
T ss_dssp EEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCC----------SSSSHHHHHHHHHHTTCSCEEECCSTTTTSC-
T ss_pred EEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCC----------CCCHHHHHHHHHHcCCCCCEEEeCCCCCCCC-
Confidence 666665322 256777888999999999999532 234577888888887 99999833 333
Q ss_pred HHHHHHHHhcCCcEEEeccc
Q psy7343 345 ADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa 364 (487)
..++- +.|+..|..|-.
T Consensus 224 --~~eL~-~lGv~~v~~~~~ 240 (295)
T 1s2w_A 224 --TDHFR-DMGVSMVIWANH 240 (295)
T ss_dssp --HHHHH-HHTCCEEEECSH
T ss_pred --HHHHH-HcCCcEEEEChH
Confidence 44444 689999998854
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.02 Score=56.70 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=88.1
Q ss_pred CCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh---ccCcEEE
Q psy7343 203 DRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA---VQVPVSC 276 (487)
Q Consensus 203 ~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~---~~iPV~v 276 (487)
+.||++-+- | .++++..+.++.++++ +.+|.|--....+ +.|..++.-+.+.+...+-+++.+++ .+.++.+
T Consensus 88 ~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k--~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I 165 (307)
T 3lye_A 88 GPPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILTK--RCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVL 165 (307)
T ss_dssp SCCEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEECCBCCCC----------CBCCHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCcEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCCc--ccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 589998875 3 3678888888877665 7888776443111 22222222223444433334444433 3667888
Q ss_pred Eeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcEEEc---CC---CCCHH
Q psy7343 277 KIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPVIAN---GN---IQCLA 345 (487)
Q Consensus 277 KiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~n---Gg---I~s~~ 345 (487)
+.|.. .+.++..+-++...++|+|.|.++|. .+.+.++++.+.++ +|+.+| |+ ..+.
T Consensus 166 ~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~-----------~~~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~t~- 233 (307)
T 3lye_A 166 IARTDALQSLGYEECIERLRAARDEGADVGLLEGF-----------RSKEQAAAAVAALAPWPLLLNSVENGHSPLITV- 233 (307)
T ss_dssp EEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECCC-----------SCHHHHHHHHHHHTTSCBEEEEETTSSSCCCCH-
T ss_pred EEechhhhccCHHHHHHHHHHHHHCCCCEEEecCC-----------CCHHHHHHHHHHccCCceeEEeecCCCCCCCCH-
Confidence 88763 23446777778888999999999643 34577888888874 898765 33 2343
Q ss_pred HHHHHHHhcCCcEEEecc
Q psy7343 346 DVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGR 363 (487)
.++- +.|+..|..+-
T Consensus 234 --~eL~-~lGv~~v~~~~ 248 (307)
T 3lye_A 234 --EEAK-AMGFRIMIFSF 248 (307)
T ss_dssp --HHHH-HHTCSEEEEET
T ss_pred --HHHH-HcCCeEEEECh
Confidence 3343 67998887664
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0068 Score=61.28 Aligned_cols=114 Identities=15% Similarity=0.161 Sum_probs=73.3
Q ss_pred cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc
Q psy7343 199 STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~ 270 (487)
....+.||+|+|. |.+.+++.++++.+++. .|.|++..|.-....... .+. ..++ ++++.+++.+
T Consensus 215 avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~-~~~--~~~~----~~~~~ir~~~ 287 (349)
T 3hgj_A 215 VVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIP-LAP--GFQV----PFADAVRKRV 287 (349)
T ss_dssp HSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCC-CCT--TTTH----HHHHHHHHHH
T ss_pred HhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccC-CCc--cccH----HHHHHHHHHc
Confidence 3456789999997 35688899999988876 899999865311100000 000 0123 3455577777
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
++||++.+ .+.+..++.+.+++..+|.|++ ||..-. +-+++.++++.++
T Consensus 288 ~iPVi~~G----gi~t~e~a~~~l~~G~aD~V~i-GR~~la--------nPdl~~k~~~~l~ 336 (349)
T 3hgj_A 288 GLRTGAVG----LITTPEQAETLLQAGSADLVLL-GRVLLR--------DPYFPLRAAKALG 336 (349)
T ss_dssp CCEEEECS----SCCCHHHHHHHHHTTSCSEEEE-STHHHH--------CTTHHHHHHHHTT
T ss_pred CceEEEEC----CCCCHHHHHHHHHCCCceEEEe-cHHHHh--------CchHHHHHHHHCC
Confidence 99999997 5556667666666655999999 885321 2234666666553
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0079 Score=59.96 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=83.8
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+- .+..+..+.+
T Consensus 31 D~~~l~~lv~~li~~--------Gv-~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg--~~t~~ai~la 99 (316)
T 3e96_A 31 DWHHYKETVDRIVDN--------GI-DVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIG--YATSTAIELG 99 (316)
T ss_dssp CHHHHHHHHHHHHTT--------TC-CEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC--SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeC--cCHHHHHHHH
Confidence 667778877766555 44 4455666677665445666677777776655 589999873 3666888999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCC---CCHHHHHHHHhhCCCcEE-Ec-CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGL---ASWEHITAVRKALTIPVI-AN-GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~---~~~~~i~~i~~~~~iPVi-~n-GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+ ..++.++.|.+.+++||+ +| |--.+++.+.++.
T Consensus 100 ~~A~~~Gadavlv~~P------~y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La 158 (316)
T 3e96_A 100 NAAKAAGADAVMIHMP------IHPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLA 158 (316)
T ss_dssp HHHHHHTCSEEEECCC------CCSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHT
T ss_pred HHHHhcCCCEEEEcCC------CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999321 12221 134777888888899986 66 6556777777665
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.016 Score=57.58 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=94.0
Q ss_pred CCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCcc-ccccCChHHHHHHHHHHhhhc-cCcEEEE
Q psy7343 203 DRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYG-AYLQDDWPLLTNLVSSLRQAV-QVPVSCK 277 (487)
Q Consensus 203 ~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G-~~l~~d~~~i~eiv~~v~~~~-~iPV~vK 277 (487)
+.||++-+- | .++++..+.++.+.++ +.+|.|--+.. ..+.|..+ ..+. ..+...+-+++++++. +.++.+.
T Consensus 101 ~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iED~~~--~k~cgH~~gk~L~-p~~e~~~rI~Aa~~A~~~~~~~I~ 177 (318)
T 1zlp_A 101 NLCVVVDGDTGGGGPLNVQRFIRELISAGAKGVFLEDQVW--PKKCGHMRGKAVV-PAEEHALKIAAAREAIGDSDFFLV 177 (318)
T ss_dssp SSEEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEEECBCS--SCCCSSSSCCCBC-CHHHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCC--CccccCCCCCccC-CHHHHHHHHHHHHHhcccCCcEEE
Confidence 589998875 3 2788888887766666 78888876542 22233333 3343 3444444444555443 3456666
Q ss_pred eeccc----ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc---CC---CCCHHHH
Q psy7343 278 IRIYQ----DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN---GN---IQCLADV 347 (487)
Q Consensus 278 iR~~~----d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n---Gg---I~s~~da 347 (487)
.|... +.++..+-++.++++|+|.|.+++. .+.+.++++.+.+++|+.+| || ..+ .
T Consensus 178 ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~-----------~~~e~~~~i~~~l~~P~lan~~~~g~~~~~~---~ 243 (318)
T 1zlp_A 178 ARTDARAPHGLEEGIRRANLYKEAGADATFVEAP-----------ANVDELKEVSAKTKGLRIANMIEGGKTPLHT---P 243 (318)
T ss_dssp EEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC-----------CSHHHHHHHHHHSCSEEEEEECTTSSSCCCC---H
T ss_pred EeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcCC-----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCC---H
Confidence 66532 1246777788999999999999542 35678999999999999765 32 334 3
Q ss_pred HHHHHhcCCcEEEecccc
Q psy7343 348 EACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~ 365 (487)
.++- +.|+..|..|-.+
T Consensus 244 ~eL~-~lGv~~v~~~~~~ 260 (318)
T 1zlp_A 244 EEFK-EMGFHLIAHSLTA 260 (318)
T ss_dssp HHHH-HHTCCEEEECSHH
T ss_pred HHHH-HcCCeEEEEchHH
Confidence 3444 6899999988543
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.026 Score=58.00 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=52.3
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcce--ee-ccCccccccCChHHHHHHHHHHhhhccCcEEEEe
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMV--AK-RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i--~~-~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi 278 (487)
+.||++.- ..+. +.++.+++. +|+|.+..+ |-.+ +. .+..| ..+++.+.++.+ +.+..++||++.+
T Consensus 194 ~~pviv~~-v~~~----~~a~~a~~~Gad~I~vg~~-~G~~~~~~~~~~~g---~p~~~~l~~v~~-~~~~~~ipVia~G 263 (404)
T 1eep_A 194 NLDLIAGN-IVTK----EAALDLISVGADCLKVGIG-PGSICTTRIVAGVG---VPQITAICDVYE-ACNNTNICIIADG 263 (404)
T ss_dssp TCEEEEEE-ECSH----HHHHHHHTTTCSEEEECSS-CSTTSHHHHHHCCC---CCHHHHHHHHHH-HHTTSSCEEEEES
T ss_pred CCeEEEcC-CCcH----HHHHHHHhcCCCEEEECCC-CCcCcCccccCCCC---cchHHHHHHHHH-HHhhcCceEEEEC
Confidence 57888731 1233 334444444 888888322 1110 00 01111 123445555444 3334689999997
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.+.+..++.+.+. .|+|+|++ ||.
T Consensus 264 ----GI~~~~d~~~ala-~GAd~V~i-G~~ 287 (404)
T 1eep_A 264 ----GIRFSGDVVKAIA-AGADSVMI-GNL 287 (404)
T ss_dssp ----CCCSHHHHHHHHH-HTCSEEEE-CHH
T ss_pred ----CCCCHHHHHHHHH-cCCCHHhh-CHH
Confidence 6778888888886 79999999 875
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.025 Score=52.57 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCH-HHHHHHHHhcCCcEEEecc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPVIANGNIQCL-ADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~-~da~~~l~~~Gad~VmiGR 363 (487)
.....+++..+.|++++.+.+. ..+.++++++..+ .+++..|||+.. .++.+++ +.|+|.+.+||
T Consensus 120 ~v~~~~~~a~~~G~~G~~~~~~------------~~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~-~aGad~vvvGr 186 (208)
T 2czd_A 120 LTDRFIEVANEIEPFGVIAPGT------------RPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAV-KAGADYIIVGR 186 (208)
T ss_dssp GHHHHHHHHHHHCCSEEECCCS------------STHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHH-HHTCSEEEECH
T ss_pred HHHHHHHHHHHhCCcEEEECCC------------ChHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHH-HcCCCEEEECh
Confidence 3556678888999999977211 2355777777765 367799999863 3788888 67999999999
Q ss_pred ccccCc
Q psy7343 364 GNLYNP 369 (487)
Q Consensus 364 a~l~~P 369 (487)
+++..+
T Consensus 187 ~I~~a~ 192 (208)
T 2czd_A 187 AIYNAP 192 (208)
T ss_dssp HHHTSS
T ss_pred HHhcCC
Confidence 988754
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.017 Score=60.27 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHH
Q psy7343 212 GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 212 g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~ 288 (487)
+.+++++.+.++.. ++.+..+.++.|+ +++.-.+.++++++++ ++++.+...-+++..+..
T Consensus 199 ~~~~e~~~~~a~~~~~~Gf~~~KlKvG~----------------~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~ 262 (441)
T 4a35_A 199 GYSDDTLKQLCAQALKDGWTRFKVKVGA----------------DLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAV 262 (441)
T ss_dssp TCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 45788888766644 4457777776554 3444455677788776 456666655567777888
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++++.+++.++..|- | + . .+.+++..+++++. +++||.+.-.+.+..++.++++...+|.+++-
T Consensus 263 ~~~~~L~~~~~~~iE-------e-P-~-~~~d~~~~~~l~~~l~~~~iPIa~gE~~~~~~~~~~~l~~~a~div~~d 329 (441)
T 4a35_A 263 EWMSKLAKFKPLWIE-------E-P-T-SPDDILGHATISKALVPLGIGIATGEQCHNRVIFKQLLQAKALQFLQID 329 (441)
T ss_dssp HHHHHHGGGCCSEEE-------C-C-S-CTTCHHHHHHHHHHHGGGTCEEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred HHHHhhcccCccEEe-------C-C-C-CcccHHHHHHHHHhccCCCCCEEeCCccccHHHHHHHHHcCCCCEEEEC
Confidence 999999999988773 2 1 1 23578888899887 78999999999999999999977778888653
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0058 Score=57.66 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC---CCCCCCCH-HHHHHHHhhC-
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG---MNTGLASW-EHITAVRKAL- 331 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g---~~~g~~~~-~~i~~i~~~~- 331 (487)
+.+.+.++..++. ++.+++-+ . +..+ .+.+.+.|.+.|-++.|.....| ....+... +..+.+++..
T Consensus 98 ~e~~~~~~~a~~~-Gl~~iv~v----~--~~~e-~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~ 169 (219)
T 2h6r_A 98 ADIEAVINKCKNL-GLETIVCT----N--NINT-SKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINK 169 (219)
T ss_dssp HHHHHHHHHHHHH-TCEEEEEE----S--SSHH-HHHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHC-CCeEEEEe----C--CchH-HHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccC
Confidence 3466666665543 66666654 1 1222 24456678888888776542222 01111112 3444455544
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++||++.|||++.+++..+. ..|+|+|.||++++.-++.
T Consensus 170 ~~~ii~ggGI~~~~~~~~~~-~~gaDgvlVGsAi~~~~d~ 208 (219)
T 2h6r_A 170 DVKVLCGAGISKGEDVKAAL-DLGAEGVLLASGVVKAKNV 208 (219)
T ss_dssp TCEEEECSSCCSHHHHHHHH-TTTCCCEEESHHHHTCSSH
T ss_pred CCeEEEEeCcCcHHHHHHHh-hCCCCEEEEcHHHhCcccH
Confidence 79999999999999999987 7899999999999876554
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0062 Score=62.95 Aligned_cols=98 Identities=12% Similarity=0.171 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCC
Q psy7343 256 WPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTI 333 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~i 333 (487)
.+...+.++++|+++ ++++.+..--+++.++..++++.+++.|++.|-- + ...+.+++..+++++.+++
T Consensus 196 ~~~d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEq--------P-~~~~~~~~~~~~l~~~~~i 266 (410)
T 3dip_A 196 LKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVED--------P-IAKMDNIPAVADLRRQTRA 266 (410)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTCSEEEC--------C-BSCTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC--------C-CCCcccHHHHHHHHhhCCC
Confidence 456677888898887 4677775544677788889999999999998852 1 0122378889999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
||.+.+.+.+.+++.++++...+|.|++=
T Consensus 267 PIa~dE~~~~~~~~~~~l~~~~~d~v~~k 295 (410)
T 3dip_A 267 PICGGENLAGTRRFHEMLCADAIDFVMLD 295 (410)
T ss_dssp CEEECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred CEEecCCcCCHHHHHHHHHcCCCCeEeec
Confidence 99999999999999999977778998864
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0046 Score=62.19 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=71.3
Q ss_pred hhcChhHHHHHHhc--CCCCCCeeeeecc-------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCC
Q psy7343 186 FIADKKLRQEILMS--TPEDRPLIIQFCG-------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDD 255 (487)
Q Consensus 186 Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~g-------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d 255 (487)
+.++.+...++++. ...+.||+|+|.. .+.++..++++.+++. .|.|++..|.... .... .+. ..+
T Consensus 190 lenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~-~~~~-~~~--~~~ 265 (338)
T 1z41_A 190 PENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVH-ADIN-VFP--GYQ 265 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSC-CCCC-CCT--TTT
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc-CCCC-CCc--cch
Confidence 33444444555531 1127899999864 4677888999988876 8999988664110 0000 010 012
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
++ +++.+++.+++||++++ ++.+..++.+.+++.++|.|++ ||..
T Consensus 266 ~~----~~~~ir~~~~iPVi~~G----gi~s~~~a~~~l~~G~aD~V~i-GR~~ 310 (338)
T 1z41_A 266 VS----FAEKIREQADMATGAVG----MITDGSMAEEILQNGRADLIFI-GREL 310 (338)
T ss_dssp HH----HHHHHHHHHCCEEEECS----SCCSHHHHHHHHHTTSCSEEEE-CHHH
T ss_pred HH----HHHHHHHHCCCCEEEEC----CCCCHHHHHHHHHcCCceEEee-cHHH
Confidence 33 44556777799999997 5667777777777666999999 8853
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.016 Score=56.97 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=84.4
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 19 D~~~l~~lv~~li~~--------Gv-~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la 88 (292)
T 2vc6_A 19 DEVALHDLVEWQIEE--------GS-FGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGS-NSTAEAIAFV 88 (292)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-ccHHHHHHHH
Confidence 667777777766555 44 4455666677765445666677777776655 5899987621 1445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..- .|..+. ..+.++.|.+.+++||+. .|--.+++.+.++.+
T Consensus 89 ~~A~~~Gadavlv~~P------~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (292)
T 2vc6_A 89 RHAQNAGADGVLIVSP------YYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFE 152 (292)
T ss_dssp HHHHHTTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHcCCCEEEEcCC------CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHh
Confidence 9999999999999432 122221 246777888889999876 465568888888874
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.014 Score=56.25 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=72.1
Q ss_pred HHhhhccCcEEEEeec-cc------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE
Q psy7343 265 SLRQAVQVPVSCKIRI-YQ------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337 (487)
Q Consensus 265 ~v~~~~~iPV~vKiR~-~~------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~ 337 (487)
++++. +++|++-+.- .+ + .+..++++.+++.|+++|.|- |.. +.+.| ..+.++.+++.+++||..
T Consensus 40 al~~~-~~~~IaE~k~aSPskg~i~~-~~p~~~A~~~~~~GA~~isvl--t~~--~~f~G--~~~~l~~i~~~v~lPvl~ 111 (254)
T 1vc4_A 40 ALLRP-GLSVIAEVKRQSPSEGLIRE-VDPVEAALAYARGGARAVSVL--TEP--HRFGG--SLLDLKRVREAVDLPLLR 111 (254)
T ss_dssp HHTSS-SCEEEEEECSCCTTTCCCCS-CCHHHHHHHHHHTTCSEEEEE--CCC--SSSCC--CHHHHHHHHHHCCSCEEE
T ss_pred HHhhc-CCcEEeeecCCCcCCCcCCC-CCHHHHHHHHHHcCCCEEEEe--cch--hhhcc--CHHHHHHHHHhcCCCEEE
Confidence 44433 5778885431 11 3 578999999999999999982 111 12333 467889999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
-+.|.+..++.+++ ..|||+|.++...+.
T Consensus 112 kdfI~d~~qi~~a~-~~GAD~VlL~~~~l~ 140 (254)
T 1vc4_A 112 KDFVVDPFMLEEAR-AFGASAALLIVALLG 140 (254)
T ss_dssp ESCCCSHHHHHHHH-HTTCSEEEEEHHHHG
T ss_pred CCcCCCHHHHHHHH-HcCCCEEEECccchH
Confidence 99999999998888 799999999998775
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.012 Score=57.24 Aligned_cols=77 Identities=18% Similarity=0.145 Sum_probs=63.7
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
..+..++++.+++.|+++|.|-. . .+.+.| ..+.++++++.+++||+..+.|.+..++.++. ..|||+|.++-
T Consensus 78 ~~dp~~~A~~y~~~GA~~IsVlt--d--~~~f~G--s~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~-~~GAD~VlLi~ 150 (272)
T 3tsm_A 78 DFDPPALAKAYEEGGAACLSVLT--D--TPSFQG--APEFLTAARQACSLPALRKDFLFDPYQVYEAR-SWGADCILIIM 150 (272)
T ss_dssp SCCHHHHHHHHHHTTCSEEEEEC--C--STTTCC--CHHHHHHHHHTSSSCEEEESCCCSTHHHHHHH-HTTCSEEEEET
T ss_pred CCCHHHHHHHHHHCCCCEEEEec--c--ccccCC--CHHHHHHHHHhcCCCEEECCccCCHHHHHHHH-HcCCCEEEEcc
Confidence 34789999999999999998832 1 122333 57889999999999999999999999999988 79999999998
Q ss_pred cccc
Q psy7343 364 GNLY 367 (487)
Q Consensus 364 a~l~ 367 (487)
..+.
T Consensus 151 a~L~ 154 (272)
T 3tsm_A 151 ASVD 154 (272)
T ss_dssp TTSC
T ss_pred cccC
Confidence 7663
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0049 Score=58.92 Aligned_cols=133 Identities=8% Similarity=0.018 Sum_probs=79.7
Q ss_pred eeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--------cCcEEEEe
Q psy7343 207 IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--------QVPVSCKI 278 (487)
Q Consensus 207 ~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--------~iPV~vKi 278 (487)
-+.+..++++.+.+.+..+ .+|+| +.|.... +.+.+.++.+++.. +..+.+-+
T Consensus 73 DvhLMv~~p~~~i~~~~~a--GAd~i----------tvH~ea~-------~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l 133 (237)
T 3cu2_A 73 DVHLMVRNQLEVAKAVVAN--GANLV----------TLQLEQY-------HDFALTIEWLAKQKTTYANQVYPVLIGACL 133 (237)
T ss_dssp EEEEECSCHHHHHHHHHHT--TCSEE----------EEETTCT-------TSHHHHHHHHTTCEEEETTEEEECEEEEEE
T ss_pred CeEEEEECHHHHHHHHHHc--CCCEE----------EEecCCc-------ccHHHHHHHHHhcccccccccCCceEEEEE
Confidence 6777767887777655433 23444 4444311 12445666666541 33344443
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEE---EccccCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHH
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAV---HGRTVDQRGMNTGLASWEHITAVRKAL-----TIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~V---hgRt~~~~g~~~g~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~ 350 (487)
+..+..+..+.+. .++|.|.+ ++....|. + .+...+.++++++.. ++||.+.|||+ .+.+.++
T Consensus 134 ----~p~Tp~~~l~~~l-~~~D~vlvMsv~pgfggq~--f-~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~ 204 (237)
T 3cu2_A 134 ----CPETPISELEPYL-DQIDVIQLLTLDPRNGTKY--P-SELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYF 204 (237)
T ss_dssp ----CTTSCGGGGTTTT-TTCSEEEEESEETTTTEEC--C-HHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHH
T ss_pred ----eCCChHHHHHHHh-hcCceeeeeeeccCcCCee--c-ChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHH
Confidence 2223333333222 26998866 44433222 1 122357777777765 68999999997 7888888
Q ss_pred HHh--cCCcEEEeccccccC
Q psy7343 351 LAQ--TGVAGVMTAEGNLYN 368 (487)
Q Consensus 351 l~~--~Gad~VmiGRa~l~~ 368 (487)
. + .|||++.+|++++..
T Consensus 205 ~-~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 205 K-QGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp H-HSSSCCCCEEECGGGGSS
T ss_pred H-HhCCCCcEEEEeeHHhCC
Confidence 8 7 899999999998764
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0052 Score=60.83 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=61.4
Q ss_pred HHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----C
Q psy7343 260 TNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-----T 332 (487)
Q Consensus 260 ~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-----~ 332 (487)
.+-++++++..+ .++.+-. ++..+ ++...+.|+|+|+++.- ..+.++++++.+ +
T Consensus 184 ~~ai~~~r~~~~~~~~i~vev------~tlee-~~~A~~aGaD~I~ld~~------------~~~~l~~~v~~l~~~~~~ 244 (299)
T 2jbm_A 184 EKAVRAARQAADFALKVEVEC------SSLQE-AVQAAEAGADLVLLDNF------------KPEELHPTATVLKAQFPS 244 (299)
T ss_dssp HHHHHHHHHHHTTTSCEEEEE------SSHHH-HHHHHHTTCSEEEEESC------------CHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCcCCeEEEec------CCHHH-HHHHHHcCCCEEEECCC------------CHHHHHHHHHHhhccCCC
Confidence 344555555553 4566644 23444 44444689999999431 234455444433 4
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+||.++||| |.+.+.++. ++|+|++.+|+.....|++
T Consensus 245 ~~I~ASGGI-t~~ni~~~~-~aGaD~i~vGs~i~~a~~~ 281 (299)
T 2jbm_A 245 VAVEASGGI-TLDNLPQFC-GPHIDVISMGMLTQAAPAL 281 (299)
T ss_dssp SEEEEESSC-CTTTHHHHC-CTTCCEEECTHHHHSCCCC
T ss_pred eeEEEECCC-CHHHHHHHH-HCCCCEEEEChhhcCCCCc
Confidence 899999999 899999998 8999999999976655655
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.087 Score=48.97 Aligned_cols=192 Identities=13% Similarity=0.060 Sum_probs=107.8
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN 235 (487)
.|+++..=...+.+.|++.+---+...+.=.-+++...++....+.. ...|-++ ..++++..+.++.+. .|.|+||
T Consensus 6 CGit~~eda~~a~~~GaD~iGfif~~~SpR~V~~~~a~~i~~~~~~~-~~~VgVfvn~~~~~i~~~~~~~~--ld~vQLH 82 (203)
T 1v5x_A 6 CGITRLEDALLAEALGAFALGFVLAPGSRRRIAPEAARAIGEALGPF-VVRVGVFRDQPPEEVLRLMEEAR--LQVAQLH 82 (203)
T ss_dssp CCCCCHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHSCSS-SEEEEEESSCCHHHHHHHHHHTT--CSEEEEC
T ss_pred cCCCcHHHHHHHHHcCCCEEEEEecCCCCCcCCHHHHHHHHHhCCCC-CCEEEEEeCCCHHHHHHHHHhhC--CCEEEEC
Confidence 45565544456667888653211111111111344555565443322 2233334 456666666655442 4555555
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~ 315 (487)
|. .+++.+.+ ++. ++|++--+++... .+. . +.++.+|++.+.... |+.
T Consensus 83 ----------G~------e~~~~~~~----l~~--~~~vika~~v~~~-~~l-~----~~~~~~d~~LlD~~~----gGt 130 (203)
T 1v5x_A 83 ----------GE------EPPEWAEA----VGR--FYPVIKAFPLEGP-ARP-E----WADYPAQALLLDGKR----PGS 130 (203)
T ss_dssp ----------SC------CCHHHHHH----HTT--TSCEEEEEECSSS-CCG-G----GGGSSCSEEEEECSS----TTS
T ss_pred ----------CC------CCHHHHHH----hcc--CCCEEEEEEcCCh-Hhh-h----hhhcCCCEEEEcCCC----CCC
Confidence 32 34555544 322 5788877766532 222 1 234448999996432 223
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHH
Q psy7343 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQ 392 (487)
Q Consensus 316 ~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~ 392 (487)
....+|+.++.+. ..+.|++.+||+ +++.+.+++ ..++.||-+.+|.-..|-. + ..+.++++++.++.
T Consensus 131 G~~fdW~~l~~~~-~~~~p~~LAGGL-~peNV~~ai-~~~p~gVDvsSGvE~~pG~----K--D~~ki~~fi~~~r~ 198 (203)
T 1v5x_A 131 GEAYPRAWAKPLL-ATGRRVILAGGI-APENLEEVL-ALRPYALDLASGVEEAPGV----K--SAEKLRALFARLAS 198 (203)
T ss_dssp CCCCCGGGGHHHH-HTTSCEEECSSC-CSTTHHHHH-HHCCSEEEESGGGEEETTE----E--CHHHHHHHHHHHHH
T ss_pred CCccCHHHHHhhh-ccCCcEEEECCC-CHHHHHHHH-hcCCCEEEeCCceecCCCC----c--CHHHHHHHHHHHHH
Confidence 3356898877632 246899999999 577887777 7899999999998865643 1 12445555555444
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.016 Score=56.83 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=61.2
Q ss_pred HHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcE
Q psy7343 260 TNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPV 335 (487)
Q Consensus 260 ~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPV 335 (487)
.+-++.+++..+ .+|.+.. ++..++ +.+.++|+|.|+++.- ..+.++++.+.+ ++|+
T Consensus 183 ~~av~~ar~~~~~~~~IgVev------~t~eea-~eA~~aGaD~I~ld~~------------~~~~~k~av~~v~~~ipi 243 (286)
T 1x1o_A 183 GEAVRRAKARAPHYLKVEVEV------RSLEEL-EEALEAGADLILLDNF------------PLEALREAVRRVGGRVPL 243 (286)
T ss_dssp HHHHHHHHHHSCTTSCEEEEE------SSHHHH-HHHHHHTCSEEEEESC------------CHHHHHHHHHHHTTSSCE
T ss_pred HHHHHHHHHhCCCCCEEEEEe------CCHHHH-HHHHHcCCCEEEECCC------------CHHHHHHHHHHhCCCCeE
Confidence 344555666553 3455543 344444 4455789999999432 223445544444 6999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.++|||+ .+.+.++. ++|+|++.+|.....-|++
T Consensus 244 ~AsGGIt-~eni~~~a-~tGvD~IsVgs~~~~a~~~ 277 (286)
T 1x1o_A 244 EASGNMT-LERAKAAA-EAGVDYVSVGALTHSAKAL 277 (286)
T ss_dssp EEESSCC-HHHHHHHH-HHTCSEEECTHHHHSCCCC
T ss_pred EEEcCCC-HHHHHHHH-HcCCCEEEEcHHHcCCCce
Confidence 9999995 89999988 7999999999866665554
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.02 Score=56.65 Aligned_cols=123 Identities=18% Similarity=0.164 Sum_probs=84.2
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 34 D~~~l~~lv~~li~~--------Gv-~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la 103 (304)
T 3l21_A 34 DTATAARLANHLVDQ--------GC-DGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGT-YDTAHSIRLA 103 (304)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-CCHHHHHHHH
Confidence 677777777766555 44 4455556667655445666677777776655 5799987511 2456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEE-Ec-----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVI-AN-----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..- .|..+. ..+.++.|.+++++||+ +| |--.+++.+.++.+
T Consensus 104 ~~a~~~Gadavlv~~P------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 167 (304)
T 3l21_A 104 KACAAEGAHGLLVVTP------YYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALAS 167 (304)
T ss_dssp HHHHHHTCSEEEEECC------CSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 9999999999999432 122221 24678888888999987 44 66678888888763
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0072 Score=62.22 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+++.-.+.++++++++ ++++.+..--+++..+..++++.+++.|++.|-- + . .+.+++..+++++.++
T Consensus 192 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEe--------P-~-~~~~~~~~~~l~~~~~ 261 (400)
T 4dxk_A 192 DLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTFWHED--------P-I-KMDSLSSLTRYAAVSP 261 (400)
T ss_dssp HHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHTGGGCCSEEEC--------C-B-CTTSGGGHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCEEEc--------C-C-CcccHHHHHHHHHhCC
Confidence 3555677788888887 4677775544677788889999999999998862 1 1 2236778899999999
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+||.+.+.+.+..+++++++...+|.|++=
T Consensus 262 iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d 291 (400)
T 4dxk_A 262 APISASETLGSRWAFRDLLETGAAGVVMLD 291 (400)
T ss_dssp SCEEECTTCCHHHHHHHHHHTTCCCEEEEC
T ss_pred CCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999999976678988753
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.021 Score=56.29 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=82.9
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 19 D~~~l~~lv~~li~~--------Gv-~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la 88 (297)
T 2rfg_A 19 DEKALAGLVDWQIKH--------GA-HGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGS-NNPVEAVRYA 88 (297)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCC-CCHHHHHHHH
Confidence 667777777765554 44 4455566677665445666667777776655 4899987621 1445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+. | |--.+++.+.++.+
T Consensus 89 ~~A~~~Gadavlv~~P------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (297)
T 2rfg_A 89 QHAQQAGADAVLCVAG------YYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAA 152 (297)
T ss_dssp HHHHHHTCSEEEECCC------TTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHhcCCCEEEEcCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 9999999999999321 132222 246777888889999864 4 55568888888763
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.028 Score=56.60 Aligned_cols=122 Identities=18% Similarity=0.120 Sum_probs=83.1
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++-+-- .+..+..+.+
T Consensus 50 D~~~l~~lv~~li~~--------Gv-~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~-~st~eai~la 119 (343)
T 2v9d_A 50 DKPGTAALIDDLIKA--------GV-DGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGG-TNARETIELS 119 (343)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCS-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHHH
Confidence 667777777766555 44 4556666677765445666677777777655 5899987621 2445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+. | |--.+++.+.++.
T Consensus 120 ~~A~~~Gadavlv~~P------~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La 182 (343)
T 2v9d_A 120 QHAQQAGADGIVVINP------YYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLA 182 (343)
T ss_dssp HHHHHHTCSEEEEECC------SSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred HHHHhcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 9999999999999432 122221 246777888888999864 4 5446788888876
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.084 Score=52.05 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=90.1
Q ss_pred CCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCc-cccccCChHHHHHHHHHHhhh---ccCcE
Q psy7343 202 EDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY-GAYLQDDWPLLTNLVSSLRQA---VQVPV 274 (487)
Q Consensus 202 ~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~-G~~l~~d~~~i~eiv~~v~~~---~~iPV 274 (487)
.+.||++-+- | .++++..+.++.++++ +.+|.|--....+ +.|.. |..+. +.+...+-+++.+++ .+.++
T Consensus 79 ~~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iEDq~~~K--rcgh~~gk~l~-~~~e~~~rI~Aa~~A~~~~~~d~ 155 (302)
T 3fa4_A 79 PSTPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQTK--RCGHLAGKILV-DTDTYVTRIRAAVQARQRIGSDI 155 (302)
T ss_dssp TTSCEEEECTTTTSSHHHHHHHHHHHHHTTCCEEEECSBCCC---------CCCBC-CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cCCCEEEECCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCc--ccCCCCCCeec-CHHHHHHHHHHHHHHHHhcCCCE
Confidence 3789999875 3 3677888888877666 7888776443111 11222 22333 444433334444433 25778
Q ss_pred EEEeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEc---CCCCCHHH
Q psy7343 275 SCKIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIAN---GNIQCLAD 346 (487)
Q Consensus 275 ~vKiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~n---GgI~s~~d 346 (487)
.++-|.. .+.++..+-++...++|+|.|.++|- .+.+.++++.+.+ +.|+.+| |+-...-.
T Consensus 156 ~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~-----------~~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~ 224 (302)
T 3fa4_A 156 VVIARTDSLQTHGYEESVARLRAARDAGADVGFLEGI-----------TSREMARQVIQDLAGWPLLLNMVEHGATPSIS 224 (302)
T ss_dssp EEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETTC-----------CCHHHHHHHHHHTTTSCEEEECCTTSSSCCCC
T ss_pred EEEEEecccccCCHHHHHHHHHHHHHcCCCEEeecCC-----------CCHHHHHHHHHHhcCCceeEEEecCCCCCCCC
Confidence 8888763 23456677778888999999999553 2457788888888 5898876 22211112
Q ss_pred HHHHHHhcCCcEEEeccc
Q psy7343 347 VEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa 364 (487)
..++- +.|+..|..+-.
T Consensus 225 ~~eL~-~lGv~~v~~~~~ 241 (302)
T 3fa4_A 225 AAEAK-EMGFRIIIFPFA 241 (302)
T ss_dssp HHHHH-HHTCSEEEETTT
T ss_pred HHHHH-HcCCCEEEEchH
Confidence 33443 679988887743
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.038 Score=54.36 Aligned_cols=122 Identities=13% Similarity=0.114 Sum_probs=82.9
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 19 D~~~l~~lv~~li~~--------Gv-~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la 88 (294)
T 2ehh_A 19 DYEALGNLIEFHVDN--------GT-DAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGG-NATHEAVHLT 88 (294)
T ss_dssp CHHHHHHHHHHHHTT--------TC-CEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHHH
Confidence 777788877766555 44 4455566677665445666667777776655 4899887621 1445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+. | |--.+++.+.++.
T Consensus 89 ~~A~~~Gadavlv~~P------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 151 (294)
T 2ehh_A 89 AHAKEVGADGALVVVP------YYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLA 151 (294)
T ss_dssp HHHHHTTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHhcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHH
Confidence 9999999999999432 122221 246777888889999864 4 5456888888876
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0059 Score=67.24 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=74.9
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCcCcEEEeecCCCcce-eeccCcccccc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPHCDGIDINIGCPQMV-AKRGHYGAYLQ 253 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i-~~~gr~G~~l~ 253 (487)
+.+......++++ ....+.||.++|. |.+.++..++++.+++..|.|+++.|. ... ....++.
T Consensus 203 ~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l~~~~d~~~v~~~~-~~~~~~~~~~~---- 277 (690)
T 3k30_A 203 LENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGVLRELGELPDLWDFAMGS-WEGDSVTSRFA---- 277 (690)
T ss_dssp HHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHHHHHHTTSSSEEEEECSC-HHHHTCCTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhhcCEEEEeccc-ccccCCCCccC----
Confidence 3444444555553 3345678999983 455788899999998888999999875 110 0001100
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
......++++.+++.+++||++++ ++.+..+..+.+++.++|.|++ ||.
T Consensus 278 -~~~~~~~~~~~i~~~~~~pvi~~G----~i~~~~~a~~~l~~g~~d~v~~-gR~ 326 (690)
T 3k30_A 278 -PEGRQEEFVAGLKKLTTKPVVGVG----RFTSPDAMVRQIKAGILDLIGA-ARP 326 (690)
T ss_dssp -CTTTTHHHHTTSGGGCSSCEEECS----CCCCHHHHHHHHHTTSCSEEEE-SHH
T ss_pred -CccccHHHHHHHHHHcCCeEEEeC----CCCCHHHHHHHHHCCCcceEEE-cHH
Confidence 111113455668888999999998 5667777778888777999999 885
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.018 Score=57.32 Aligned_cols=120 Identities=15% Similarity=0.220 Sum_probs=81.6
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+ +.+..+..+.+
T Consensus 31 D~~~l~~lv~~li~~--------Gv-~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGv--g~st~~ai~la 99 (314)
T 3d0c_A 31 DWKGLDDNVEFLLQN--------GI-EVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGI--GYSVDTAIELG 99 (314)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEE--CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecC--CcCHHHHHHHH
Confidence 677777777766555 44 4455566677665445666677777776655 58999876 22455778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c--CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N--GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n--GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+++++||+. | |- .+++.+.++.
T Consensus 100 ~~A~~~Gadavlv~~P------~y~~~s~~~l~~~f~~va~a~~lPiilYn~tg~-l~~~~~~~La 158 (314)
T 3d0c_A 100 KSAIDSGADCVMIHQP------VHPYITDAGAVEYYRNIIEALDAPSIIYFKDAH-LSDDVIKELA 158 (314)
T ss_dssp HHHHHTTCSEEEECCC------CCSCCCHHHHHHHHHHHHHHSSSCEEEEECCTT-SCTHHHHHHT
T ss_pred HHHHHcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC-cCHHHHHHHH
Confidence 9999999999999322 122222 246778888889999864 4 44 6677777765
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.029 Score=55.38 Aligned_cols=123 Identities=14% Similarity=0.157 Sum_probs=83.0
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 31 D~~~l~~lv~~li~~--------Gv-~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~-~~t~~ai~la 100 (301)
T 1xky_A 31 DFAKTTKLVNYLIDN--------GT-TAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGS-NNTHASIDLT 100 (301)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCC-CCHHHHHHHH
Confidence 667777777766555 44 4455556667665445666677777776655 5899987621 1445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+. | |--.+++.+.++.+
T Consensus 101 ~~A~~~Gadavlv~~P------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 164 (301)
T 1xky_A 101 KKATEVGVDAVMLVAP------YYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE 164 (301)
T ss_dssp HHHHHTTCSEEEEECC------CSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHHhcCCCEEEEcCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 9999999999999432 122221 246778888889999864 4 54567888888763
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.026 Score=56.55 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=83.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-..+.-.++++.+.+.+ .+||++-+-- .+..+..+.+
T Consensus 53 D~~~l~~lv~~li~~--------Gv-~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~-~st~eai~la 122 (332)
T 2r8w_A 53 DIEAFSALIARLDAA--------EV-DSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGA-LRTDEAVALA 122 (332)
T ss_dssp CHHHHHHHHHHHHHH--------TC-SEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHHH
Confidence 667777777766555 44 4455566677765445666677777777655 4899987621 1445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+. | |--.+++.+.++.+
T Consensus 123 ~~A~~~Gadavlv~~P------~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~ 186 (332)
T 2r8w_A 123 KDAEAAGADALLLAPV------SYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAY 186 (332)
T ss_dssp HHHHHHTCSEEEECCC------CSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHT
T ss_pred HHHHhcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHc
Confidence 9999999999999322 122221 246778888889999864 4 54568888888864
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.034 Score=55.04 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=82.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++-+-- .+..+..+.+
T Consensus 31 D~~~l~~lv~~li~~--------Gv-~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-~st~~ai~la 100 (306)
T 1o5k_A 31 DLESYERLVRYQLEN--------GV-NALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGT-NSTEKTLKLV 100 (306)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCC-ccHHHHHHHH
Confidence 677777777766555 44 4455566677665445666667777776655 5899987611 1445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+. | |--.+++.+.++.
T Consensus 101 ~~A~~~Gadavlv~~P------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 163 (306)
T 1o5k_A 101 KQAEKLGANGVLVVTP------YYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIA 163 (306)
T ss_dssp HHHHHHTCSEEEEECC------CSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHhcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 9999999999999432 122221 246778888888999874 4 5446788888876
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.005 Score=60.80 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----
Q psy7343 259 LTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL----- 331 (487)
Q Consensus 259 i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~----- 331 (487)
+.+-++++++..+ .++.+-. ++..++. ...++|+|+|+++.- + .+.++++++.+
T Consensus 185 i~~ai~~~r~~~~~~~~i~vev------~tlee~~-~A~~aGaD~I~ld~~---------~---~~~l~~~v~~l~~~~~ 245 (294)
T 3c2e_A 185 ITNAVKNARAVCGFAVKIEVEC------LSEDEAT-EAIEAGADVIMLDNF---------K---GDGLKMCAQSLKNKWN 245 (294)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEC------SSSHHHH-HHHHHTCSEEECCC------------------------------
T ss_pred HHHHHHHHHHhcCcCCeEEEec------CCHHHHH-HHHHcCCCEEEECCC---------C---HHHHHHHHHHhccccc
Confidence 3445555665553 4566643 2334433 344689999998421 1 23333333333
Q ss_pred ---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 332 ---TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 332 ---~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++||.++||| |.+.+.++. ++|+|++.+|+.....|++
T Consensus 246 g~~~v~I~ASGGI-t~~ni~~~~-~~GvD~i~vGs~i~~a~~~ 286 (294)
T 3c2e_A 246 GKKHFLLECSGGL-NLDNLEEYL-CDDIDIYSTSSIHQGTPVI 286 (294)
T ss_dssp ---CCEEEEECCC-CC------C-CCSCSEEECGGGTSSCCCC
T ss_pred CCCCeEEEEECCC-CHHHHHHHH-HcCCCEEEEechhcCCCCC
Confidence 3899999999 889999998 8999999999987665654
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.036 Score=54.37 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=82.8
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-+.+.-.++++.+.+.+ .+||++-+-- .+..+..+.+
T Consensus 19 D~~~l~~lv~~li~~--------Gv-~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la 88 (289)
T 2yxg_A 19 DFDGLEENINFLIEN--------GV-SGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGS-NCTEEAIELS 88 (289)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHHH
Confidence 677777777765555 44 4455556667665445666667777776655 4899887621 1445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+. | |--.+++.+.++.
T Consensus 89 ~~a~~~Gadavlv~~P------~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 151 (289)
T 2yxg_A 89 VFAEDVGADAVLSITP------YYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLA 151 (289)
T ss_dssp HHHHHHTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHhcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 9999999999999432 122221 246778888889999864 4 5556888888876
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0091 Score=60.67 Aligned_cols=113 Identities=18% Similarity=0.169 Sum_probs=71.5
Q ss_pred CCCCCCeeeeecc--------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc
Q psy7343 200 TPEDRPLIIQFCG--------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270 (487)
Q Consensus 200 ~~~~~Pv~Vqi~g--------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~ 270 (487)
...+.||.|+|.. .+.+++.++++.+++. .|.|++..|......... .+.. .+. ++++.+++.+
T Consensus 222 vg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~-~~~~--~~~----~~~~~ir~~~ 294 (363)
T 3l5l_A 222 WPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIP-WGPA--FMG----PIAERVRREA 294 (363)
T ss_dssp SCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCC-CCTT--TTH----HHHHHHHHHH
T ss_pred cCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccC-CCcc--hhH----HHHHHHHHHc
Confidence 3457899999873 3456778888888776 899999876411100000 0100 123 3455577778
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
++||++.+ .+.+..++.+.+++.++|.|++ ||..-. +-+++.++++.++
T Consensus 295 ~iPVi~~G----gI~s~e~a~~~l~~G~aD~V~i-GR~~la--------nPdl~~k~~~~lg 343 (363)
T 3l5l_A 295 KLPVTSAW----GFGTPQLAEAALQANQLDLVSV-GRAHLA--------DPHWAYFAAKELG 343 (363)
T ss_dssp TCCEEECS----STTSHHHHHHHHHTTSCSEEEC-CHHHHH--------CTTHHHHHHHHTT
T ss_pred CCcEEEeC----CCCCHHHHHHHHHCCCccEEEe-cHHHHh--------CchHHHHHHHHcC
Confidence 99999997 5556667666776655999999 885321 2234666666654
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.037 Score=55.01 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=83.0
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 42 D~~~l~~lv~~li~~--------Gv-~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~-~st~eai~la 111 (314)
T 3qze_A 42 DWDSLAKLVDFHLQE--------GT-NAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGA-NSTREAVALT 111 (314)
T ss_dssp CHHHHHHHHHHHHHH--------TC-CEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-cCHHHHHHHH
Confidence 667777777766555 44 3455556667665445666667777666655 5899986511 2456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+. ..+.++.|.+.+++||+. | |--.+++.+.++.
T Consensus 112 ~~A~~~Gadavlv~~P------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 174 (314)
T 3qze_A 112 EAAKSGGADACLLVTP------YYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLS 174 (314)
T ss_dssp HHHHHTTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHHcCCCEEEEcCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 9999999999999432 122221 347788888899999874 3 6667788887776
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.043 Score=54.60 Aligned_cols=121 Identities=22% Similarity=0.199 Sum_probs=82.3
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 43 D~~~l~~lv~~li~~--------Gv-~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~-~~t~~ai~la 112 (315)
T 3na8_A 43 DLPALGRSIERLIDG--------GV-HAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSD-LTTAKTVRRA 112 (315)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHHH
Confidence 667777777766554 44 4455556667665445666677777776655 5899986511 2456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEE-Ec-----CCCCCHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVI-AN-----GNIQCLADVEAC 350 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~da~~~ 350 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+ +| |--.+++.+.++
T Consensus 113 ~~A~~~Gadavlv~~P------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 174 (315)
T 3na8_A 113 QFAESLGAEAVMVLPI------SYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRI 174 (315)
T ss_dssp HHHHHTTCSEEEECCC------CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred HHHHhcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHH
Confidence 9999999999999322 122221 34778888888999987 44 555678888877
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.01 Score=58.28 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----
Q psy7343 259 LTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL----- 331 (487)
Q Consensus 259 i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~----- 331 (487)
+.+.++.+++..+ .+|.+-+ ++. +-++.+.++|+|.|+++.- ..+.++++.+.+
T Consensus 179 i~~av~~ar~~~~~~~~I~VEV------~tl-eea~eA~~aGaD~I~LDn~------------~~e~l~~av~~l~~~~~ 239 (285)
T 1o4u_A 179 AERAVQEVRKIIPFTTKIEVEV------ENL-EDALRAVEAGADIVMLDNL------------SPEEVKDISRRIKDINP 239 (285)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEE------SSH-HHHHHHHHTTCSEEEEESC------------CHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCCceEEEEe------CCH-HHHHHHHHcCCCEEEECCC------------CHHHHHHHHHHhhccCC
Confidence 3455666666553 4555543 344 4445556789999999542 223344433333
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++|+.++|||+ .+.+.++. ++|+|++.+|.....-|++
T Consensus 240 ~v~ieASGGIt-~eni~~~a-~tGVD~IsvGslt~sa~~~ 277 (285)
T 1o4u_A 240 NVIVEVSGGIT-EENVSLYD-FETVDVISSSRLTLQEVFV 277 (285)
T ss_dssp TSEEEEEECCC-TTTGGGGC-CTTCCEEEEGGGTSSCCCC
T ss_pred CceEEEECCCC-HHHHHHHH-HcCCCEEEEeHHHcCCCCc
Confidence 78999999994 68888887 8999999999977766654
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0083 Score=66.54 Aligned_cols=226 Identities=14% Similarity=0.048 Sum_probs=128.1
Q ss_pred hhcCCCceEEecCCCCC--CHHH------HHHHHHcCCCeEEccceecc--cccc--------CcH--HHHHHhh--hCC
Q psy7343 74 TQLGSPRFILAPMVDAS--ELPW------RLLSRRYGSHLCYTPMVSAH--QFIA--------DKK--LRQEILM--STP 131 (487)
Q Consensus 74 ~~~~~~~~~LAPMag~t--d~pF------R~l~~~~Gadl~~TEMi~a~--~l~~--------~~~--~~~~~~~--~~~ 131 (487)
.++ +|++++|||.+.. +.|+ +..+ +.|+++++||++... +... +.. ..++.+. .+.
T Consensus 18 ~~l-~NRiv~apm~~~~~~~~~~~~~~~y~~ra-~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~ 95 (729)
T 1o94_A 18 KTL-RNRFYQVPHCIGAGSDKPGFQSAHRSVKA-EGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHK 95 (729)
T ss_dssp EEE-SSSEEECCCCCSCTTTCHHHHHHHHHHHH-HTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHHHHHT
T ss_pred EEE-CCccEECCCcCCcCCCCcHHHHHHHHHHh-cCCCCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHHHHHh
Confidence 455 7899999999863 4564 2233 468999999998775 2221 111 2333332 455
Q ss_pred CCCceeeeeccccCCCCC----ccccccccCC------------Cc-------hHHHHH---HHHhCCccc---------
Q psy7343 132 EDRPLIIQRTIFPRLGSP----RFILAPMVDA------------SE-------LPWRLL---SRRYGSHLC--------- 176 (487)
Q Consensus 132 ~e~p~~vQl~~~~~~g~~----~~~lApma~~------------td-------~~fr~i---~~~~Ga~l~--------- 176 (487)
.+.++++|+...+..... ...++|-+-- |. ..|... +.+.|.|..
T Consensus 96 ~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a~gyL 175 (729)
T 1o94_A 96 YGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYL 175 (729)
T ss_dssp TTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTCH
T ss_pred CCCeEEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchH
Confidence 678999998654321110 0112222110 00 124332 333454321
Q ss_pred ----eecccc------chhhhcChhHHHHHHh----cCCCCCCeeeeec--------cCC-HHHHHHHHHhhCCcCcEEE
Q psy7343 177 ----YTPMVS------AHQFIADKKLRQEILM----STPEDRPLIIQFC--------GND-SKNLTEAAKLAEPHCDGID 233 (487)
Q Consensus 177 ----~t~~v~------~~~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~--------g~d-~~~~~~aa~~~~~~~d~Id 233 (487)
.+|..+ |..+.+......++++ ....+.||+++|. |.+ .++..++++.+++..|.|+
T Consensus 176 l~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~l~~~~d~~~ 255 (729)
T 1o94_A 176 PLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWD 255 (729)
T ss_dssp HHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHGGGCSEEE
T ss_pred HHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHHHHHHHHHhhcCEEE
Confidence 112221 2234444455555554 3455789999985 233 4677888898887789999
Q ss_pred eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 234 INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 234 iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
++.|.-... ++..............++++.+++.+++||++++ ++.+..++.+.+++.++|.|++ ||.
T Consensus 256 v~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G----~i~~~~~a~~~l~~g~aD~V~~-gR~ 323 (729)
T 1o94_A 256 ITIGDIAEW--GEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVG----RYTDPEKMIEIVTKGYADIIGC-ARP 323 (729)
T ss_dssp EEECCSTTG--GGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCS----CCCCHHHHHHHHHTTSCSBEEE-SHH
T ss_pred Eeeeccccc--ccccCCccccCccccHHHHHHHHHHCCCEEEEeC----CCCCHHHHHHHHHCCCCCEEEe-Cch
Confidence 988751110 0100110000111113455668888999999998 5557788888888877999999 874
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.039 Score=56.70 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=88.9
Q ss_pred HHHHHHHHH-hhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHH
Q psy7343 215 SKNLTEAAK-LAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 215 ~~~~~~aa~-~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a 291 (487)
++++.+.++ .+++ .+..+.+..| .+++.-.+.++++++.+ ++++.+...-+|+..+..+++
T Consensus 169 ~e~~~~~a~~~~~~~G~~~~K~KvG----------------~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~ 232 (398)
T 4dye_A 169 PKAMAEHAVRVVEEGGFDAVKLKGT----------------TDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAG 232 (398)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECC----------------SCHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecC----------------CCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHH
Confidence 466665544 4555 5666655544 13444556677777776 556666554467777888999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
+.+++.|+..|- | + .. +++..+++++.+++||.+...+.+..++.++++...+|.|++--
T Consensus 233 ~~l~~~~i~~iE-------q-P-~~---d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~ 292 (398)
T 4dye_A 233 IALEELDLEYLE-------D-P-CV---GIEGMAQVKAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDV 292 (398)
T ss_dssp HHHGGGCCSEEE-------C-C-SS---HHHHHHHHHHHCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECH
T ss_pred HHHhhcCCCEEc-------C-C-CC---CHHHHHHHHhhCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCc
Confidence 999999998873 2 1 22 78899999999999999999999999999999777799988643
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.096 Score=51.64 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=84.4
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc---cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV---QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~---~iPV~vKiR~~~d~~~~~e~ 290 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.
T Consensus 26 D~~~l~~lv~~li~~--------Gv-~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~-~~t~~ai~l 95 (301)
T 3m5v_A 26 DEQSYARLIKRQIEN--------GI-DAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGS-NATHEAVGL 95 (301)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCC-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCC-CCHHHHHHH
Confidence 667777777765554 44 4455556667655445666667777776655 4799986511 245678899
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEE-Ec-----CCCCCHHHHHHHHHh
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVI-AN-----GNIQCLADVEACLAQ 353 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~da~~~l~~ 353 (487)
++.+++.|+|++++..- .|..+. ..+.++.|.+.+++||+ +| |--.+++.+.++.+.
T Consensus 96 a~~a~~~Gadavlv~~P------~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~ 161 (301)
T 3m5v_A 96 AKFAKEHGADGILSVAP------YYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRD 161 (301)
T ss_dssp HHHHHHTTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCC------CCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHHHhc
Confidence 99999999999999432 122221 34778888888999987 43 666788888888754
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.061 Score=53.24 Aligned_cols=123 Identities=20% Similarity=0.117 Sum_probs=84.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 33 D~~~l~~lv~~li~~--------Gv-~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la 102 (307)
T 3s5o_A 33 DYGKLEENLHKLGTF--------PF-RGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGC-ESTQATVEMT 102 (307)
T ss_dssp CHHHHHHHHHHHTTS--------CC-SEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCC-CCHHHHHHHH
Confidence 677778877776665 54 4566667677765445666677888777765 5888886511 2455788899
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCC-----CCCHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTG-----LASWEHITAVRKALTIPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g-----~~~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..- .|.. ...++.++.|.+.+++||+. | |--.+++.+.++.+
T Consensus 103 ~~A~~~Gadavlv~~P------~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 168 (307)
T 3s5o_A 103 VSMAQVGADAAMVVTP------CYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQ 168 (307)
T ss_dssp HHHHHTTCSEEEEECC------CTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHcCCCEEEEcCC------CcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHHHhc
Confidence 9999999999999432 1221 11347788888889999874 3 44467888877763
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=96.03 E-value=0.015 Score=59.08 Aligned_cols=104 Identities=9% Similarity=-0.003 Sum_probs=68.0
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeeccC-----------CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCcc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFCGN-----------DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYG 249 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~-----------d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G 249 (487)
+.+..+...++++ ....+ ||+|+|... +.+++.++++.+++. .|.|+++.+.-. +...
T Consensus 207 lenr~r~~~eiv~avr~~vg~~-~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~-----~~~~ 280 (364)
T 1vyr_A 207 VENRARLVLEVVDAVCNEWSAD-RIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLA-----GGKP 280 (364)
T ss_dssp HHHHTHHHHHHHHHHHHHSCGG-GEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTT-----BCCC
T ss_pred hhcChhhHHHHHHHHHHhcCCC-cEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCccc-----CCCc
Confidence 3444444545553 33335 999998743 344677788888876 899988764311 1001
Q ss_pred ccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 250 ~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
..++ +++.+++.+++||++++ ++ +..++.+.+++.++|.|++ ||..
T Consensus 281 ----~~~~----~~~~v~~~~~iPvi~~G----gi-t~~~a~~~l~~g~aD~V~~-gR~~ 326 (364)
T 1vyr_A 281 ----YSEA----FRQKVRERFHGVIIGAG----AY-TAEKAEDLIGKGLIDAVAF-GRDY 326 (364)
T ss_dssp ----CCHH----HHHHHHHHCCSEEEEES----SC-CHHHHHHHHHTTSCSEEEE-SHHH
T ss_pred ----ccHH----HHHHHHHHCCCCEEEEC----Cc-CHHHHHHHHHCCCccEEEE-CHHH
Confidence 1233 45567778899999998 44 5677777777767999999 8853
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.041 Score=54.21 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=82.1
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 26 D~~~l~~lv~~li~~--------Gv-~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la 95 (297)
T 3flu_A 26 HYEQLRDLIDWHIEN--------GT-DGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGA-NNTVEAIALS 95 (297)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-cCHHHHHHHH
Confidence 667777777765554 44 4455556667665445666667777776655 5899986511 2456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEE-Ec-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVI-AN-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+. ..+.++.|.+++++||+ +| |--.+++.+.++.
T Consensus 96 ~~a~~~Gadavlv~~P------~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 158 (297)
T 3flu_A 96 QAAEKAGADYTLSVVP------YYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLA 158 (297)
T ss_dssp HHHHHTTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHT
T ss_pred HHHHHcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHH
Confidence 9999999999999432 122221 24778888888999987 44 5556777777765
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.022 Score=60.90 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHcC---CcEEEEEccccCC--CCCCC-CCCCHHHHHHHHhh------CCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 286 KTVEYARMLERAG---CQLLAVHGRTVDQ--RGMNT-GLASWEHITAVRKA------LTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 286 ~~~e~a~~le~~G---~d~I~VhgRt~~~--~g~~~-g~~~~~~i~~i~~~------~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
+..+ +....+.| +|+|.+ |-.... +..+. .+..++.++++++. .++||++-||| +.+++.++++.
T Consensus 117 t~ee-a~~A~~~G~~~aDYv~~-Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~ 193 (540)
T 3nl6_A 117 FPEE-VDELSKMGPDMVDYIGV-GTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQ 193 (540)
T ss_dssp SHHH-HHHHHHTCC--CCEEEE-SCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHH
T ss_pred CHHH-HHHHHHcCCCCCCEEEE-cCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHh
Confidence 4444 45667789 999999 432111 11111 12346777777765 48999999999 78999999952
Q ss_pred -------cCCcEEEeccccccCcc
Q psy7343 354 -------TGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 354 -------~Gad~VmiGRa~l~~P~ 370 (487)
.|+|+|.++++++..++
T Consensus 194 ~~~~g~~~GadgvAVvsaI~~a~d 217 (540)
T 3nl6_A 194 CVSSNGKRSLDGICVVSDIIASLD 217 (540)
T ss_dssp CBCTTSSCBCSCEEESHHHHTCTT
T ss_pred hcccccccCceEEEEeHHHhcCCC
Confidence 78999999999997554
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0058 Score=57.97 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=62.0
Q ss_pred hccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHH
Q psy7343 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADV 347 (487)
Q Consensus 269 ~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da 347 (487)
..+++++.- ..+..++ ....+.|+|.|.++.- .. .. -.+.++.++..+ ++|+++.||| +.+.+
T Consensus 117 ~~g~~~i~G------~~t~~e~-~~A~~~Gad~vk~FPa--~~---~~---G~~~lk~i~~~~~~ipvvaiGGI-~~~N~ 180 (225)
T 1mxs_A 117 DSEIPLLPG------ISTPSEI-MMGYALGYRRFKLFPA--EI---SG---GVAAIKAFGGPFGDIRFCPTGGV-NPANV 180 (225)
T ss_dssp HCSSCEECE------ECSHHHH-HHHHTTTCCEEEETTH--HH---HT---HHHHHHHHHTTTTTCEEEEBSSC-CTTTH
T ss_pred HhCCCEEEe------eCCHHHH-HHHHHCCCCEEEEccC--cc---cc---CHHHHHHHHhhCCCCeEEEECCC-CHHHH
Confidence 457776643 2344444 5566899999999441 00 00 157889999888 8999999999 46889
Q ss_pred HHHHHhcCCcEEEeccccccCccc
Q psy7343 348 EACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.++++..|+++|. |++++..+.+
T Consensus 181 ~~~l~~~Ga~~v~-gSai~~~~~i 203 (225)
T 1mxs_A 181 RNYMALPNVMCVG-TTWMLDSSWI 203 (225)
T ss_dssp HHHHHSTTBCCEE-ECTTSCHHHH
T ss_pred HHHHhccCCEEEE-EchhcCchhh
Confidence 9999448999999 9887766555
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.048 Score=54.22 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=83.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 41 D~~~l~~li~~li~~--------Gv-~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~-~st~~ai~la 110 (315)
T 3si9_A 41 DEKAFCNFVEWQITQ--------GI-NGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGS-NSTSEAVELA 110 (315)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHHH
Confidence 667777777765554 44 3455556667665445666667777776655 5899986511 2456788899
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEE-Ec-----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVI-AN-----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+ +| |--.+++.+.++.+
T Consensus 111 ~~A~~~Gadavlv~~P------~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 174 (315)
T 3si9_A 111 KHAEKAGADAVLVVTP------YYNRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCR 174 (315)
T ss_dssp HHHHHTTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHHh
Confidence 9999999999999432 122221 34778888888999987 43 65667888888875
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.037 Score=54.69 Aligned_cols=123 Identities=11% Similarity=0.205 Sum_probs=82.1
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 30 D~~~l~~lv~~li~~--------Gv-~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~-~~t~~ai~la 99 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQ--------GI-DGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGC-VSTAESQQLA 99 (303)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHHH
Confidence 667777777765554 44 4455556667665445666677777776655 5899987611 1445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCC-CcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALT-IPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~-iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.++ +||+. | |--.+++.+.++.+
T Consensus 100 ~~A~~~Gadavlv~~P------~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l~~~~~~~La~ 164 (303)
T 2wkj_A 100 ASAKRYGFDAVSAVTP------FYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVT 164 (303)
T ss_dssp HHHHHHTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred HHHHhCCCCEEEecCC------CCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 9999999999999432 122221 2467778888888 99864 4 44467888888763
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.04 Score=54.48 Aligned_cols=122 Identities=17% Similarity=0.152 Sum_probs=82.0
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 35 D~~~l~~lv~~li~~--------Gv-~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~st~~ai~la 104 (304)
T 3cpr_A 35 DIAAGREVAAYLVDK--------GL-DSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGT-NNTRTSVELA 104 (304)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCC-CCHHHHHHHH
Confidence 667777777766555 44 4455666677765445666667777776655 4899887611 1445788889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+. | |---+++.+.++.
T Consensus 105 ~~A~~~Gadavlv~~P------~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 167 (304)
T 3cpr_A 105 EAAASAGADGLLVVTP------YYSKPSQEGLLAHFGAIAAATEVPICLYDIPGRSGIPIESDTMRRLS 167 (304)
T ss_dssp HHHHHTTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHT
T ss_pred HHHHhcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 9999999999999422 122222 246778888889999864 4 4445778777775
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.027 Score=54.86 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|+++|.|.. ... .+.| ..+.++++++.+++||+..+.|.+..++.++. ..|||+|.++-+
T Consensus 72 ~~p~~~A~~y~~~GA~~isvlt--d~~--~f~G--s~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~-~~GAD~VlLi~a 144 (272)
T 3qja_A 72 ADPAKLAQAYQDGGARIVSVVT--EQR--RFQG--SLDDLDAVRASVSIPVLRKDFVVQPYQIHEAR-AHGADMLLLIVA 144 (272)
T ss_dssp -CHHHHHHHHHHTTCSEEEEEC--CGG--GHHH--HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEEEGG
T ss_pred CCHHHHHHHHHHcCCCEEEEec--Chh--hcCC--CHHHHHHHHHhCCCCEEECccccCHHHHHHHH-HcCCCEEEEecc
Confidence 4789999999999999999831 111 1222 35788999999999999999999999899888 799999999987
Q ss_pred cccC
Q psy7343 365 NLYN 368 (487)
Q Consensus 365 ~l~~ 368 (487)
.+.+
T Consensus 145 ~l~~ 148 (272)
T 3qja_A 145 ALEQ 148 (272)
T ss_dssp GSCH
T ss_pred cCCH
Confidence 7654
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.044 Score=51.63 Aligned_cols=153 Identities=10% Similarity=0.074 Sum_probs=83.2
Q ss_pred ChhHHHHHHhcCC-CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHh
Q psy7343 189 DKKLRQEILMSTP-EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267 (487)
Q Consensus 189 ~~~~~~~~l~~~~-~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~ 267 (487)
.++..+++-+..+ ....+=+|+. ..|+.+.+++ .+. |+ ..+++|+..| .+.+.+.++.++
T Consensus 45 G~~~v~~l~~~~p~~~iflDlKl~-Dip~t~~~~~---~~~--------Ga-d~vtVH~~~g------~~~l~~a~~~~~ 105 (221)
T 3exr_A 45 GSELVEVLRSLFPDKIIVADTKCA-DAGGTVAKNN---AVR--------GA-DWMTCICSAT------IPTMKAARKAIE 105 (221)
T ss_dssp CTHHHHHHHHHCTTSEEEEEEEEC-SCHHHHHHHH---HTT--------TC-SEEEEETTSC------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCcEEEEEEee-ccHHHHHHHH---HHc--------CC-CEEEEeccCC------HHHHHHHHHHHH
Confidence 4444444433221 2233445665 5677766653 333 33 3455555422 344556666665
Q ss_pred hhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC-CCHHHHHHHHhhC--CCcEEEcCCCC
Q psy7343 268 QAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL-ASWEHITAVRKAL--TIPVIANGNIQ 342 (487)
Q Consensus 268 ~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~-~~~~~i~~i~~~~--~iPVi~nGgI~ 342 (487)
+.-. ..+.+-+ . ...+ .+.++.+.+.|++.+.+|--...+. .|. ...+.++.+++.. +++|...|||
T Consensus 106 ~~g~~~~~~~Vt~--l-ts~~-~~~~~~~~~~~~~~~v~~~a~~~~~---~Gvv~s~~e~~~ir~~~~~~~~i~v~gGI- 177 (221)
T 3exr_A 106 DINPDKGEIQVEL--Y-GDWT-YDQAQQWLDAGISQAIYHQSRDALL---AGETWGEKDLNKVKKLIEMGFRVSVTGGL- 177 (221)
T ss_dssp HHCTTTCEEEEEC--C-SSCC-HHHHHHHHHTTCCEEEEECCHHHHH---HTCCCCHHHHHHHHHHHHHTCEEEEESSC-
T ss_pred hcCCCcceEEEEE--c-CCCC-HHHHHHHHcCCHHHHHHHHHHhcCC---CccccCHHHHHHHHHhhcCCceEEEECCC-
Confidence 4321 2222222 1 1112 3334455677999888853211111 121 2344566666654 6888999999
Q ss_pred CHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 343 CLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
+++++..+. ..|||.+.+||++...+
T Consensus 178 ~~~~~~~~~-~aGad~~VvG~~I~~a~ 203 (221)
T 3exr_A 178 SVDTLKLFE-GVDVFTFIAGRGITEAK 203 (221)
T ss_dssp CGGGGGGGT-TCCCSEEEECHHHHTSS
T ss_pred CHHHHHHHH-HCCCCEEEECchhhCCC
Confidence 566777776 78999999999877543
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.018 Score=58.31 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=55.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
....+.++.+.++|+|.|.++.-.. +. ...|+.++++++.. ++||++ |+|.|+++++.+. +.|||+|.+|
T Consensus 99 ~~~~e~~~~a~~aGvdvI~id~a~G-----~~-~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~-~aGaD~I~Vg 169 (361)
T 3r2g_A 99 ENELQRAEALRDAGADFFCVDVAHA-----HA-KYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLA-SCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCC-----SS-HHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHH-HTTCSEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC-----Cc-HhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHH-HcCCCEEEEc
Confidence 4567889999999999999953210 11 12368899999886 899988 7799999999988 7899999985
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.042 Score=54.04 Aligned_cols=123 Identities=9% Similarity=0.068 Sum_probs=82.4
Q ss_pred CHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
|.+.+.+.++.+.+ . |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.
T Consensus 22 D~~~l~~lv~~li~~~--------Gv-~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~l 91 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKM--------KV-DGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAVEL 91 (293)
T ss_dssp CHHHHHHHHHHHHHTS--------CC-SEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCC-SCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--------CC-cEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCC-CCHHHHHHH
Confidence 66777777776555 5 44 4455566677665445666677777776655 5899887611 144577888
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
++.+++.|+|++++..- .|..+. .++.++.|.+.+++||+. | |--.+++.+.++.+
T Consensus 92 a~~a~~~Gadavlv~~P------~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 156 (293)
T 1f6k_A 92 GKYATELGYDCLSAVTP------FYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYK 156 (293)
T ss_dssp HHHHHHHTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred HHHHHhcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhc
Confidence 99999999999999432 122222 246777888888999864 4 44467888888763
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.044 Score=53.88 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=82.6
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 21 D~~~l~~lv~~li~~--------Gv-~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la 90 (292)
T 3daq_A 21 NLEALKAHVNFLLEN--------NA-QAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGT-NDTEKSIQAS 90 (292)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCc-ccHHHHHHHH
Confidence 667777777765554 44 4455566667655445566666777666654 5899987521 2456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEE-Ec-----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVI-AN-----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..- .|..+. ..+.++.|.+.+++||+ +| |--.+++.+.++.+
T Consensus 91 ~~a~~~Gadavlv~~P------~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 154 (292)
T 3daq_A 91 IQAKALGADAIMLITP------YYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQ 154 (292)
T ss_dssp HHHHHHTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc
Confidence 9999999999999432 122221 24677888888899987 44 66677888887763
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.017 Score=58.90 Aligned_cols=105 Identities=10% Similarity=-0.011 Sum_probs=67.4
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeeccC----------CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFCGN----------DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGA 250 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~----------d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~ 250 (487)
+.+..+...++++ ....+ ||+|+|... +.+++.++++.+++. .|.|+++.|. .. . ...+
T Consensus 212 lenR~r~~~eiv~aVr~avg~~-~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~-~~-~--~~~~- 285 (377)
T 2r14_A 212 IENRARFPLEVVDAVAEVFGPE-RVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPD-WI-G--GDIT- 285 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC----------C-
T ss_pred hhhchHHHHHHHHHHHHHcCCC-cEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc-cc-C--CCCc-
Confidence 4344444445553 22334 999998632 356778889988877 8999988654 11 0 0001
Q ss_pred cccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
.+++. ++.+++.+++||++++ ++ +..++.+.+++.+||.|++ ||..
T Consensus 286 ---~~~~~----~~~ik~~~~iPvi~~G----gi-~~~~a~~~l~~g~aD~V~i-gR~~ 331 (377)
T 2r14_A 286 ---YPEGF----REQMRQRFKGGLIYCG----NY-DAGRAQARLDDNTADAVAF-GRPF 331 (377)
T ss_dssp ---CCTTH----HHHHHHHCCSEEEEES----SC-CHHHHHHHHHTTSCSEEEE-SHHH
T ss_pred ---chHHH----HHHHHHHCCCCEEEEC----CC-CHHHHHHHHHCCCceEEee-cHHH
Confidence 13444 4456777899999998 55 4667777777767999999 8853
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.044 Score=54.06 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=82.1
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 23 D~~~l~~lv~~li~~--------Gv-~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la 92 (300)
T 3eb2_A 23 RADVMGRLCDDLIQA--------GV-HGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVAS-TSVADAVAQA 92 (300)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEE-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHHH
Confidence 667777777766555 55 4556667777765445666677777776655 5899886521 2456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEE-Ec-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVI-AN-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi-~n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..-. |..+. ..+.++.|.+.+++||+ +| |--.+++.+.++.
T Consensus 93 ~~a~~~Gadavlv~~P~------y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 155 (300)
T 3eb2_A 93 KLYEKLGADGILAILEA------YFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLA 155 (300)
T ss_dssp HHHHHHTCSEEEEEECC------SSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHH
T ss_pred HHHHHcCCCEEEEcCCC------CCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHH
Confidence 99999999999994321 22221 34678888888999986 44 4345677776664
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.064 Score=52.72 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=83.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++-+-- .+..+..+.+
T Consensus 22 D~~~l~~lv~~li~~--------Gv-~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la 91 (294)
T 3b4u_A 22 DIDAMIAHARRCLSN--------GC-DSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLV-DSIEDAADQS 91 (294)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-ccHHHHHHHH
Confidence 667777777766555 44 4455666677765446666777888777765 5899987621 1445788899
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCC-CC---CHHHHHHHHhhC---CCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTG-LA---SWEHITAVRKAL---TIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g-~~---~~~~i~~i~~~~---~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|.. +. .++.++.|.+.+ ++||+. | |--.+++.+.++.
T Consensus 92 ~~A~~~Gadavlv~~P------~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La 158 (294)
T 3b4u_A 92 AEALNAGARNILLAPP------SYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLK 158 (294)
T ss_dssp HHHHHTTCSEEEECCC------CSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred HHHHhcCCCEEEEcCC------cCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHH
Confidence 9999999999999322 1322 22 246778888888 899864 4 5456788888876
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.034 Score=56.47 Aligned_cols=97 Identities=19% Similarity=0.276 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TI 333 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~i 333 (487)
+++...+.++.+++.-.++|.+.+ +.+ .+..+.++.+.++|+|.|.|+.-. + . .....+.++++++.. ++
T Consensus 80 s~e~~~~~i~~vk~~~~l~vga~v--g~~-~~~~~~~~~lieaGvd~I~idta~----G-~-~~~~~~~I~~ik~~~p~v 150 (366)
T 4fo4_A 80 SIEQQAAQVHQVKISGGLRVGAAV--GAA-PGNEERVKALVEAGVDVLLIDSSH----G-H-SEGVLQRIRETRAAYPHL 150 (366)
T ss_dssp CHHHHHHHHHHHHTTTSCCCEEEC--CSC-TTCHHHHHHHHHTTCSEEEEECSC----T-T-SHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHhcCceeEEEEe--ccC-hhHHHHHHHHHhCCCCEEEEeCCC----C-C-CHHHHHHHHHHHHhcCCC
Confidence 577777888888875444555543 211 245777889999999999984210 0 1 011236788898887 88
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
||++ |.+.|.++++++. +.|||+|.+|
T Consensus 151 ~Vi~-G~v~t~e~A~~a~-~aGAD~I~vG 177 (366)
T 4fo4_A 151 EIIG-GNVATAEGARALI-EAGVSAVKVG 177 (366)
T ss_dssp EEEE-EEECSHHHHHHHH-HHTCSEEEEC
T ss_pred ceEe-eeeCCHHHHHHHH-HcCCCEEEEe
Confidence 8887 7899999999988 7899999995
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.016 Score=57.54 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=45.9
Q ss_pred HHHHHHhhhccCcEE--EEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC-HHHHHHHHhhCCCcEEE
Q psy7343 261 NLVSSLRQAVQVPVS--CKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS-WEHITAVRKALTIPVIA 337 (487)
Q Consensus 261 eiv~~v~~~~~iPV~--vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~-~~~i~~i~~~~~iPVi~ 337 (487)
++++.+++..++||+ +.+ ++.+..++.+.++ .|+|+|+| |+.-... .+ ...++++++.+.
T Consensus 230 ell~~i~~~~~IPVV~VAeG----GI~Tpeda~~~l~-~GaDgV~V-GsaI~~a------~dP~~aar~l~~ai~----- 292 (330)
T 2yzr_A 230 EVLLEVKKLGRLPVVNFAAG----GVATPADAALMMQ-LGSDGVFV-GSGIFKS------ENPLERARAIVEATY----- 292 (330)
T ss_dssp HHHHHHHHHTSCSSEEEECS----CCCSHHHHHHHHH-TTCSCEEE-SHHHHTS------SCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHhCCCCeEEEEEC----CCCCHHHHHHHHH-cCcCEEee-HHHHhcC------CCHHHHHHHHHHHHH-----
Confidence 667777777789984 665 7777888877776 59999999 7753211 11 234455555432
Q ss_pred cCCCCCHHHHHHHH
Q psy7343 338 NGNIQCLADVEACL 351 (487)
Q Consensus 338 nGgI~s~~da~~~l 351 (487)
...+++-+.++-
T Consensus 293 --~~~~~~~~~~~s 304 (330)
T 2yzr_A 293 --NYDKPDIVAEVS 304 (330)
T ss_dssp --TTTCHHHHHHHH
T ss_pred --hcCCHHHHHHHH
Confidence 345566555554
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.049 Score=53.49 Aligned_cols=122 Identities=14% Similarity=0.192 Sum_probs=81.4
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 20 D~~~l~~lv~~li~~--------Gv-~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la 89 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQ--------GT-NSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGA-NSTREAIELT 89 (291)
T ss_dssp CHHHHHHHHHHHHHH--------TC-CEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--------CC-CEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-CCHHHHHHHH
Confidence 667777777765554 44 3445555567655445666667777776655 5899986511 2456788899
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+. ..+.++.|.+.+++||+. | |--.+++.+.++.
T Consensus 90 ~~a~~~Gadavlv~~P------~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 152 (291)
T 3tak_A 90 KAAKDLGADAALLVTP------YYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLA 152 (291)
T ss_dssp HHHHHHTCSEEEEECC------CSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHT
T ss_pred HHHHhcCCCEEEEcCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHH
Confidence 9999999999999432 122221 247788888889999874 3 5556777777765
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.68 Score=43.68 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=67.2
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccc----cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN----KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~----~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~ 329 (487)
.+++.+.+ +++..++||+=-+|+..... +.......+....+|++.+... |+.....||+.++.+..
T Consensus 102 E~~~~~~~----l~~~~~~~viKa~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~-----GGtG~~fDW~~~~~~~~ 172 (228)
T 4aaj_A 102 ALPQTIDT----LKKEFGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTG-----AGSGKLHDLRVSSLVAR 172 (228)
T ss_dssp CCHHHHHH----HHHHHCCEEEEEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC------------CCCHHHHHHHH
T ss_pred cCHHHHHH----HhhccCceEEEEEEecccccchhhhHHHHHHHHhccCCCEEccCCC-----CCCcCcCChHHHHHhhh
Confidence 35665554 55566888876666642211 2233344556678999998532 22222458998887765
Q ss_pred hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 330 ~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.|++.+||++ ++.+.++++..+..+|=+..|.-.
T Consensus 173 --~~p~iLAGGL~-peNV~~Ai~~~~P~gVDVsSGVEs 207 (228)
T 4aaj_A 173 --KIPVIVAGGLN-AENVEEVIKVVKPYGVDVSSGVEK 207 (228)
T ss_dssp --HSCEEEESSCC-TTTHHHHHHHHCCSEEEESGGGEE
T ss_pred --cCCeEEECCCC-HHHHHHHHHHhCCCEEEeCCCCCC
Confidence 47999999995 788888887789999999999863
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.034 Score=54.65 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=81.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 20 D~~~l~~lv~~li~~--------Gv-~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la 89 (292)
T 2ojp_A 20 CRASLKKLIDYHVAS--------GT-SAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGA-NATAEAISLT 89 (292)
T ss_dssp CHHHHHHHHHHHHHH--------TC-CEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC-ccHHHHHHHH
Confidence 667777777766555 44 4455566677665445666667777776655 5899987611 1345678888
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+. | |--.+++.+.++.
T Consensus 90 ~~a~~~Gadavlv~~P------~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 152 (292)
T 2ojp_A 90 QRFNDSGIVGCLTVTP------YYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLA 152 (292)
T ss_dssp HHTTTSSCSEEEEECC------CSSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHH
T ss_pred HHHHhcCCCEEEECCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHH
Confidence 8899999999999432 122221 246778888888999864 4 4446788888776
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.077 Score=53.95 Aligned_cols=133 Identities=10% Similarity=0.105 Sum_probs=90.1
Q ss_pred CCeeeeeccCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc---CcEEEEee
Q psy7343 204 RPLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ---VPVSCKIR 279 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~---iPV~vKiR 279 (487)
.|+...+.+.+++.+.+.++ .+++.+..+.+..|. .+++.-.+.+++++++++ +.+.+-..
T Consensus 152 vp~~~~i~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~---------------~~~~~d~~~v~avr~~~g~~~~~l~vDaN 216 (377)
T 2pge_A 152 IPVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLKIGA---------------IDFDKECALLAGIRESFSPQQLEIRVDAN 216 (377)
T ss_dssp EEBCEEECCCCHHHHHHHHHHHHHTTCSEEEEEC------------------CHHHHHHHHHHHHHHSCTTTCEEEEECT
T ss_pred EEEeEEecCCCHHHHHHHHHHHHHHhhhhheeecCC---------------CChHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 34444455557777765554 444446655554332 245555667777777764 44555433
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHH--HHHHHHhcCCc
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD--VEACLAQTGVA 357 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~d--a~~~l~~~Gad 357 (487)
-+++.++..++++.++++++..|-= + . ...+++..+++++.+++||.+.-.+.|..+ +.++++...+|
T Consensus 217 ~~~~~~~a~~~~~~l~~~~i~~iEq--------P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~i~~~a~d 286 (377)
T 2pge_A 217 GAFSPANAPQRLKRLSQFHLHSIEQ--------P-I-RQHQWSEMAALCANSPLAIALDEELIGLGAEQRSAMLDAIRPQ 286 (377)
T ss_dssp TBBCTTTHHHHHHHHHTTCCSEEEC--------C-B-CSSCHHHHHHHHHHCSSCEEESGGGTTCCTHHHHHHHHHHCCS
T ss_pred CCCCHHHHHHHHHHHhcCCCcEEEc--------c-C-CcccHHHHHHHHhhCCCcEEECCccCCcchHHHHHHHHhCCCC
Confidence 3567788899999999998876632 1 1 235789999999999999999888888888 77888777889
Q ss_pred EEEe
Q psy7343 358 GVMT 361 (487)
Q Consensus 358 ~Vmi 361 (487)
.+++
T Consensus 287 ~i~i 290 (377)
T 2pge_A 287 YIIL 290 (377)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.014 Score=59.58 Aligned_cols=106 Identities=11% Similarity=-0.048 Sum_probs=67.2
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeeccC----------CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFCGN----------DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGA 250 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~----------d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~ 250 (487)
+.+..+...++++ ....+ ||+|+|... +.+++.++++.+++. .|.|+++.+. .. .. +.
T Consensus 213 lenR~r~~~eiv~aVr~avg~~-~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~-~~--~~---~~ 285 (376)
T 1icp_A 213 LENRCRFALEIVEAVANEIGSD-RVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPR-MK--TA---WE 285 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCS-CC--C------
T ss_pred HHHhHHHHHHHHHHHHHHhcCC-ceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCc-cc--CC---CC
Confidence 3334444445553 23335 999999632 245678889999887 8999998653 11 00 11
Q ss_pred cccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
. ..+++. ++.+++.+++||++++ ++ +..++.+.+++.+||.|++ ||..
T Consensus 286 ~-~~~~~~----~~~vr~~~~iPvi~~G----~i-~~~~a~~~l~~g~aD~V~~-gR~~ 333 (376)
T 1icp_A 286 K-IECTES----LVPMRKAYKGTFIVAG----GY-DREDGNRALIEDRADLVAY-GRLF 333 (376)
T ss_dssp ----CCCC----SHHHHHHCCSCEEEES----SC-CHHHHHHHHHTTSCSEEEE-SHHH
T ss_pred c-cccHHH----HHHHHHHcCCCEEEeC----CC-CHHHHHHHHHCCCCcEEee-cHHH
Confidence 0 023333 3446677899999997 55 5677777787777999999 8853
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.02 Score=58.98 Aligned_cols=113 Identities=11% Similarity=0.026 Sum_probs=68.6
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeeccC----------CHHHHHHHHHhhCCc-------CcEEEeecCCCcceee
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFCGN----------DSKNLTEAAKLAEPH-------CDGIDINIGCPQMVAK 244 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~----------d~~~~~~aa~~~~~~-------~d~IdiN~GcP~~i~~ 244 (487)
+.+......++++ ....+ ||+|+|... +.+++.++++.+++. .|.|+++.|.-.....
T Consensus 217 lenR~rf~~Eiv~aVr~avg~~-~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~ 295 (402)
T 2hsa_B 217 LANRCKFITQVVQAVVSAIGAD-RVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQ 295 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGG-GEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTT
T ss_pred hhhhhHHHHHHHHHHHHHhCCC-cEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccC
Confidence 4444444555553 22334 899998742 235678888888764 6888887653110000
Q ss_pred ccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 245 RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 245 ~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.. . ..+ .....-.++++.+++.+++||++++ ++ +..++.+.+++.++|.|++ ||.
T Consensus 296 ~~-~-~~~-~~~~~~~~~~~~vk~~~~iPvi~~G----~i-~~~~a~~~l~~g~aD~V~i-gR~ 350 (402)
T 2hsa_B 296 TE-A-GRL-GSEEEEARLMRTLRNAYQGTFICSG----GY-TRELGIEAVAQGDADLVSY-GRL 350 (402)
T ss_dssp SS-S-TTT-THHHHHHHHHHHHHHHCSSCEEEES----SC-CHHHHHHHHHTTSCSEEEE-SHH
T ss_pred Cc-c-ccc-cCCcchHHHHHHHHHHCCCCEEEeC----CC-CHHHHHHHHHCCCCceeee-cHH
Confidence 00 0 000 0010124566778888999999997 55 5677777777777999999 885
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.034 Score=54.66 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=79.5
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++-+-- .+..+..+.+
T Consensus 20 D~~~l~~lv~~li~~--------Gv-~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~-~~t~~ai~la 89 (291)
T 3a5f_A 20 DFDKLSELIEWHIKS--------KT-DAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGS-NNTAASIAMS 89 (291)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCc-ccHHHHHHHH
Confidence 667777777765554 44 4455666677665445666667777776655 5899987621 1445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..- .|..+. .++.++.|.+.+++||+. | |--.+++.+.++.
T Consensus 90 ~~a~~~Gadavlv~~P------~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 152 (291)
T 3a5f_A 90 KWAESIGVDGLLVITP------YYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELC 152 (291)
T ss_dssp HHHHHTTCSEEEEECC------CSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHT
T ss_pred HHHHhcCCCEEEEcCC------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHH
Confidence 9999999999999432 132222 235556677778999864 4 5556778777775
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.075 Score=52.70 Aligned_cols=123 Identities=12% Similarity=0.113 Sum_probs=83.5
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 26 D~~~l~~lv~~li~~--------Gv-~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~-~~t~~ai~la 95 (311)
T 3h5d_A 26 NFDAIPALIEHLLAH--------HT-DGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGT-NDTRDSIEFV 95 (311)
T ss_dssp CTTHHHHHHHHHHHT--------TC-CCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-cCHHHHHHHH
Confidence 556677777765554 44 4455666677665446677777888777765 5899997511 2455788889
Q ss_pred HHHHHcCC-cEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGC-QLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~-d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
+.+++.|+ |++++..-. |..+. ..+.++.|.+.+++||+. | |--.+++.+.++.+
T Consensus 96 ~~A~~~Ga~davlv~~P~------y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 160 (311)
T 3h5d_A 96 KEVAEFGGFAAGLAIVPY------YNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLAD 160 (311)
T ss_dssp HHHHHSCCCSEEEEECCC------SSCCCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHHhcCCCcEEEEcCCC------CCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhc
Confidence 99999996 999994321 22221 246788888888999874 4 55567888777763
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=95.59 E-value=0.15 Score=51.52 Aligned_cols=131 Identities=15% Similarity=0.203 Sum_probs=88.6
Q ss_pred Ceeeeec-cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeec
Q psy7343 205 PLIIQFC-GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRI 280 (487)
Q Consensus 205 Pv~Vqi~-g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~ 280 (487)
++...+. +.+++...+.++.+++. +..+-+..|. .+++.-.+.++++++.++ +.+.+-.--
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~K~Kvg~---------------~~~~~d~~~v~avr~~~g~~~~l~vDaN~ 197 (370)
T 2chr_A 133 PIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGF---------------RSPQDDLIHMEALSNSLGSKAYLRVDVNQ 197 (370)
T ss_dssp EBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSS---------------SCHHHHHHHHHHHHHHTTTTSEEEEECTT
T ss_pred ceeeeeccCchhhhHHHHHHHHhhcccceeeccccc---------------CChHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 3333344 34556677777777665 5544443332 234444555667777663 344443333
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+|+.++..++++.+++.++.+|- | + . ...+++..+++++.+++||.+.-.+.+..|+.++++...+|.++
T Consensus 198 ~~~~~~A~~~~~~l~~~~~~~iE-------e-P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~i~ 267 (370)
T 2chr_A 198 AWDEQVASVYIPELEALGVELIE-------Q-P-V-GRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDVFS 267 (370)
T ss_dssp CCCTHHHHHHHHHHHTTTCCEEE-------C-C-S-CSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCceec-------C-C-C-ChhhhhhhhHHhhhccCCccCCccCCCHHHHHHHHHcCCCcEEE
Confidence 56778889999999999888763 1 1 1 23478999999999999999999999999999999666678764
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.048 Score=54.05 Aligned_cols=123 Identities=12% Similarity=0.131 Sum_probs=83.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 27 D~~~l~~lv~~li~~--------Gv-~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la 96 (309)
T 3fkr_A 27 DLASQKRAVDFMIDA--------GS-DGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSH-YSTQVCAARS 96 (309)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-chHHHHHHHH
Confidence 667777777766555 54 4566667677765445666677777776655 5899987621 2455788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCC---CCC---CCHHHHHHHHhhCCCcEEE-c----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMN---TGL---ASWEHITAVRKALTIPVIA-N----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~---~g~---~~~~~i~~i~~~~~iPVi~-n----GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..- .| ..+ ..++.++.|.+.+++||+. | |--.+++.+.++.+
T Consensus 97 ~~A~~~Gadavlv~~P------yy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~ 162 (309)
T 3fkr_A 97 LRAQQLGAAMVMAMPP------YHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAR 162 (309)
T ss_dssp HHHHHTTCSEEEECCS------CBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHH
T ss_pred HHHHHcCCCEEEEcCC------CCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHh
Confidence 9999999999999321 12 111 1347788888888999864 4 55567888887764
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.13 Score=49.44 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=88.4
Q ss_pred CCCeeeeec-c--CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc---cCcEE
Q psy7343 203 DRPLIIQFC-G--NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV---QVPVS 275 (487)
Q Consensus 203 ~~Pv~Vqi~-g--~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~---~iPV~ 275 (487)
+.||++-+- | +++ .+.++.+.+. +++|.|--+. |.. |..+ .+.+...+-+++++++. ++|+.
T Consensus 80 ~~pviaD~~~Gyg~~~---~~~~~~l~~aGa~gv~iEd~~------~~~-~k~l-~~~~e~~~~I~a~~~a~~~~g~~~~ 148 (255)
T 2qiw_A 80 SIPVSVDVESGYGLSP---ADLIAQILEAGAVGINVEDVV------HSE-GKRV-REAQEHADYIAAARQAADVAGVDVV 148 (255)
T ss_dssp SSCEEEECTTCTTCCH---HHHHHHHHHTTCCEEEECSEE------GGG-TTEE-CCHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred CCCEEeccCCCcCcHH---HHHHHHHHHcCCcEEEECCCC------CCC-CCcc-cCHHHHHHHHHHHHHHHHhcCCCeE
Confidence 379998875 3 344 5555544445 6666665332 111 2222 34555666666666542 68988
Q ss_pred EEeeccc----------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc--CCCCC
Q psy7343 276 CKIRIYQ----------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN--GNIQC 343 (487)
Q Consensus 276 vKiR~~~----------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n--GgI~s 343 (487)
++.|.+- ..++..+-++.++++|+|.|.+++- .+.+.++++.+.+++|+-.+ ++-.+
T Consensus 149 v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~-----------~~~~~~~~i~~~~~~P~n~~~~~~~~~ 217 (255)
T 2qiw_A 149 INGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPVGL-----------STAEQVERLVDAVSVPVNITAHPVDGH 217 (255)
T ss_dssp EEEEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEECCC-----------CSHHHHHHHHTTCSSCBEEECBTTTBB
T ss_pred EEEEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEEcCC-----------CCHHHHHHHHHhCCCCEEEEecCCCCC
Confidence 8888642 1346677788899999999999432 45678999999999998766 33211
Q ss_pred H-HHHHHHHHhcCCcEEEeccc
Q psy7343 344 L-ADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 344 ~-~da~~~l~~~Gad~VmiGRa 364 (487)
+ -...++- +.|+..|..|-.
T Consensus 218 p~~~~~eL~-~lGv~~v~~~~~ 238 (255)
T 2qiw_A 218 GAGDLATLA-GLGVRRVTFGPL 238 (255)
T ss_dssp TTBCHHHHH-HTTCCEEECTTH
T ss_pred CCCCHHHHH-HcCCCEEEEHHH
Confidence 1 1234444 689999998855
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.024 Score=62.14 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=73.0
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcce-eeccCccccc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMV-AKRGHYGAYL 252 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i-~~~gr~G~~l 252 (487)
+.+......++++ ....+.|++++|. |.+.+++.++++.+++. .|.|+++.|..... .....+.
T Consensus 187 ~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~--- 263 (671)
T 1ps9_A 187 YRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPV--- 263 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTS---
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccC---
Confidence 3334444455553 3455789999987 45678888999988876 89998876531110 0000000
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
......+.++.+++.+++||++++ ++.+..++.+.+++.++|.|++ ||.
T Consensus 264 --~~~~~~~~~~~i~~~~~iPvi~~G----gi~~~~~a~~~l~~g~aD~V~~-gR~ 312 (671)
T 1ps9_A 264 --PRGAFSWVTRKLKGHVSLPLVTTN----RINDPQVADDILSRGDADMVSM-ARP 312 (671)
T ss_dssp --CTTTTHHHHHHHTTSCSSCEEECS----SCCSHHHHHHHHHTTSCSEEEE-STH
T ss_pred --CcchHHHHHHHHHHhcCceEEEeC----CCCCHHHHHHHHHcCCCCEEEe-CHH
Confidence 011123456678888999999997 5557777777777766999999 875
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.062 Score=51.02 Aligned_cols=79 Identities=22% Similarity=0.197 Sum_probs=64.5
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
+|+.=+|.. +.++..++++.+.+.|++.|-|.-| .+...+.++++++.+.-.+++.|.|.+.++++.++
T Consensus 35 ~vv~Vir~~-~~~~a~~~a~al~~gGi~~iEvt~~---------t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai- 103 (232)
T 4e38_A 35 KVIPVIAID-NAEDIIPLGKVLAENGLPAAEITFR---------SDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAK- 103 (232)
T ss_dssp CEEEEECCS-SGGGHHHHHHHHHHTTCCEEEEETT---------STTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHH-
T ss_pred CEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEeCC---------CCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHH-
Confidence 455555543 7778999999999999999999433 23346889999998866789999999999999999
Q ss_pred hcCCcEEEec
Q psy7343 353 QTGVAGVMTA 362 (487)
Q Consensus 353 ~~Gad~VmiG 362 (487)
+.|||+++..
T Consensus 104 ~AGA~fIvsP 113 (232)
T 4e38_A 104 EAGATFVVSP 113 (232)
T ss_dssp HHTCSEEECS
T ss_pred HcCCCEEEeC
Confidence 7999999865
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.06 Score=53.61 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=82.0
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 30 D~~~l~~lv~~li~~--------Gv-~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la 99 (318)
T 3qfe_A 30 DLASQERYYAYLARS--------GL-TGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGA-HSTRQVLEHI 99 (318)
T ss_dssp CHHHHHHHHHHHHTT--------TC-SEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHHH
Confidence 667777777766555 44 4455666677665445666667777776655 5899986511 2456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCC-CC----CCHHHHHHHHhhCCCcEEE-c------CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNT-GL----ASWEHITAVRKALTIPVIA-N------GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~-g~----~~~~~i~~i~~~~~iPVi~-n------GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..- .|- .+ ..++.++.|.+.+++||+. | |--.+++.+.++.+
T Consensus 100 ~~a~~~Gadavlv~~P------~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~La~ 166 (318)
T 3qfe_A 100 NDASVAGANYVLVLPP------AYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIAR 166 (318)
T ss_dssp HHHHHHTCSEEEECCC------CC---CCCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCC------cccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHHHh
Confidence 9999999999999321 121 11 1247788888889999873 3 33357888888774
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.024 Score=57.55 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=67.1
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeeccC----------CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFCGN----------DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGA 250 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~----------d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~ 250 (487)
+.+..+...++++ ....+ ||+|+|... +.+++.++++.+++. .|.|+++.+. . .+.
T Consensus 207 lenr~r~~~eiv~avr~~vg~~-pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~-~----~~~--- 277 (365)
T 2gou_A 207 LENRLRFLDEVVAALVDAIGAE-RVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVD-W----DDA--- 277 (365)
T ss_dssp HHHHTHHHHHHHHHHHHHHCGG-GEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCB-T----TBC---
T ss_pred hhhhHHHHHHHHHHHHHHcCCC-cEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-c----CCC---
Confidence 3334444445553 23334 999998742 346778888888876 8899887553 1 111
Q ss_pred cccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.. ..+ ++++.+++.+++||++++ ++ +..++.+.+++.++|.|++ ||.
T Consensus 278 ~~-~~~----~~~~~i~~~~~iPvi~~G----gi-~~~~a~~~l~~g~aD~V~i-gR~ 324 (365)
T 2gou_A 278 PD-TPV----SFKRALREAYQGVLIYAG----RY-NAEKAEQAINDGLADMIGF-GRP 324 (365)
T ss_dssp CC-CCH----HHHHHHHHHCCSEEEEES----SC-CHHHHHHHHHTTSCSEEEC-CHH
T ss_pred CC-ccH----HHHHHHHHHCCCcEEEeC----CC-CHHHHHHHHHCCCcceehh-cHH
Confidence 00 123 455667888899999998 45 5667777777666999999 885
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.11 Score=53.09 Aligned_cols=140 Identities=13% Similarity=0.064 Sum_probs=85.4
Q ss_pred CeeeeeccCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeeccc
Q psy7343 205 PLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQ 282 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~ 282 (487)
|+...+...+++++.+.++ .+++.|..+-+..|.+..... .. ..++.-.+.+++++++++ +.+.+-.--+|
T Consensus 156 ~~~~t~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~~---~~----~~~~~di~~v~avR~a~~d~~L~vDaN~~w 228 (393)
T 3u9i_A 156 ETDVTITTGSVTAAARAAQAIVARGVTTIKIKIGAGDPDAT---TI----RTMEHDLARIVAIRDVAPTARLILDGNCGY 228 (393)
T ss_dssp ECCEEEC---CHHHHHHHHHHHTTTCCEEEEECC----------CH----HHHHHHHHHHHHHHHHSTTSEEEEECCSCC
T ss_pred EEEEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCCccccc---cc----ccHHHHHHHHHHHHHHCCCCeEEEEccCCC
Confidence 4334444457777776555 455557777777665211000 00 124444556677777763 33333222245
Q ss_pred ccccHHHHHHHH--HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 283 DVNKTVEYARML--ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 283 d~~~~~e~a~~l--e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+..+..++++.+ ++.++.+|- | + . ...+++..+++++.+++||.+.=.+.+..++.++++...+|.++
T Consensus 229 ~~~~A~~~~~~L~~~~~~i~~iE-------e-P-~-~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~i~ 298 (393)
T 3u9i_A 229 TAPDALRLLDMLGVHGIVPALFE-------Q-P-V-AKDDEEGLRRLTATRRVPVAADESVASATDAARLARNAAVDVLN 298 (393)
T ss_dssp CHHHHHHHHHTTTTTTCCCSEEE-------C-C-S-CTTCTTHHHHHHHTCSSCEEESTTCCSHHHHHHHHHTTCCSEEE
T ss_pred CHHHHHHHHHHHhhCCCCeEEEE-------C-C-C-CCCcHHHHHHHHhhCCCcEEeCCcCCCHHHHHHHHHcCCCCEEE
Confidence 666677777878 666666552 1 1 1 22367888999999999999999999999999999777788887
Q ss_pred e
Q psy7343 361 T 361 (487)
Q Consensus 361 i 361 (487)
+
T Consensus 299 ~ 299 (393)
T 3u9i_A 299 I 299 (393)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.12 Score=51.37 Aligned_cols=125 Identities=12% Similarity=0.105 Sum_probs=83.1
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.++
T Consensus 27 D~~~l~~lv~~li~~--------Gv-~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~-~~t~~ai~la~ 96 (313)
T 3dz1_A 27 DDVSIDRLTDFYAEV--------GC-EGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSA-PGFAAMRRLAR 96 (313)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCC-SSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--------CC-CEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCC-CCHHHHHHHHH
Confidence 667777777766555 44 4455566677665445666667777766665 6899886511 24567889999
Q ss_pred HHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC--CcEEE------cCCCCCHHHHHHHHH
Q psy7343 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT--IPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 293 ~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~--iPVi~------nGgI~s~~da~~~l~ 352 (487)
.+++.|+|++++..- ... .+....++.++.|.+.++ +||+. .|--.+++.+.++.+
T Consensus 97 ~A~~~Gadavlv~~P--~~~--~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~ 160 (313)
T 3dz1_A 97 LSMDAGAAGVMIAPP--PSL--RTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVM 160 (313)
T ss_dssp HHHHHTCSEEEECCC--TTC--CSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHH
T ss_pred HHHHcCCCEEEECCC--CCC--CCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHH
Confidence 999999999999321 110 111113477888888888 99875 365667888888764
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.12 Score=52.31 Aligned_cols=96 Identities=11% Similarity=0.087 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+++.-.+.++++++++ ++.+.+-.--+|+..+..++++.+++.|+.+|- | + ....+++..+++++.++
T Consensus 170 ~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e-P--~~~~d~~~~~~l~~~~~ 239 (378)
T 4hpn_A 170 GVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGIDWFE-------E-P--VVPEQLDAYARVRAGQP 239 (378)
T ss_dssp CHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGGCCSCEE-------C-C--SCTTCHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhcccchhh-------c-C--CCccchhhhHHHHhhCC
Confidence 3444456677777776 344444333356777888899999999887663 1 1 12347899999999999
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+||.+.-.+.+..|+.++++...+|.++
T Consensus 240 ipIa~dE~~~~~~~~~~~i~~~a~d~i~ 267 (378)
T 4hpn_A 240 IPVAGGETWHGRYGMWQALSAGAVDILQ 267 (378)
T ss_dssp SCEEECTTCCHHHHHHHHHHTTCCSEEC
T ss_pred ceeeCCcCccchHhHHHHHHcCCCCEEe
Confidence 9999999999999999999777788774
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.05 Score=53.30 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=61.0
Q ss_pred HHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh-CCCcEEE
Q psy7343 260 TNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA-LTIPVIA 337 (487)
Q Consensus 260 ~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~-~~iPVi~ 337 (487)
.+.++.+++..+ .++.+-+ ++. +-++.+.++|+|.|++|.-+.. ...+.++.++.. .++++.+
T Consensus 182 ~~av~~ar~~~~~~~I~Vev------~t~-eea~eal~aGaD~I~LDn~~~~--------~~~~~v~~l~~~~~~v~iea 246 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEV------DSL-EQLDAVLPEKPELILLDNFAVW--------QTQTAVQRRDSRAPTVMLES 246 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEE------SSH-HHHHHHGGGCCSEEEEETCCHH--------HHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEe------CCH-HHHHHHHHcCCCEEEECCCCHH--------HHHHHHHHhhccCCCeEEEE
Confidence 445555555542 2566654 244 4445555689999999653211 112344444442 2689999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+||| |.+.+.++. ++|+|.+.+|.....-|++
T Consensus 247 SGGI-t~~~i~~~a-~tGVD~isvG~l~~~a~~~ 278 (284)
T 1qpo_A 247 SGGL-SLQTAATYA-ETGVDYLAVGALTHSVRVL 278 (284)
T ss_dssp ESSC-CTTTHHHHH-HTTCSEEECGGGTSSBCCC
T ss_pred ECCC-CHHHHHHHH-hcCCCEEEECHHHcCCCCc
Confidence 9999 478888888 7999999999866655644
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.37 Score=45.45 Aligned_cols=118 Identities=17% Similarity=0.232 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc-cc----cccH
Q psy7343 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY-QD----VNKT 287 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~-~d----~~~~ 287 (487)
.++....++|+.+++. |. ..+.. + .++ .++++++.+++||+...|.. .+ +...
T Consensus 33 ~~~~~~~~~A~a~~~~--------Ga-~~i~~----~-----~~~----~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~ 90 (229)
T 3q58_A 33 DKPEIVAAMAQAAASA--------GA-VAVRI----E-----GIE----NLRTVRPHLSVPIIGIIKRDLTGSPVRITPY 90 (229)
T ss_dssp CSHHHHHHHHHHHHHT--------TC-SEEEE----E-----SHH----HHHHHGGGCCSCEEEECBCCCSSCCCCBSCS
T ss_pred CCcchHHHHHHHHHHC--------CC-cEEEE----C-----CHH----HHHHHHHhcCCCEEEEEeecCCCCceEeCcc
Confidence 3577888888888776 33 12221 1 233 35568889999998654431 11 1223
Q ss_pred HHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 288 VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 288 ~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.+-++.+.++|+|.|.+... .... .....++++.+++ .++++++ ++.|.++++++. +.|+|.|.+
T Consensus 91 ~~~i~~~~~aGad~I~l~~~-~~~~----p~~l~~~i~~~~~-~g~~v~~--~v~t~eea~~a~-~~Gad~Ig~ 155 (229)
T 3q58_A 91 LQDVDALAQAGADIIAFDAS-FRSR----PVDIDSLLTRIRL-HGLLAMA--DCSTVNEGISCH-QKGIEFIGT 155 (229)
T ss_dssp HHHHHHHHHHTCSEEEEECC-SSCC----SSCHHHHHHHHHH-TTCEEEE--ECSSHHHHHHHH-HTTCSEEEC
T ss_pred HHHHHHHHHcCCCEEEECcc-ccCC----hHHHHHHHHHHHH-CCCEEEE--ecCCHHHHHHHH-hCCCCEEEe
Confidence 44456778899999988332 1111 1122366777765 4777776 799999999988 789999975
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.097 Score=53.51 Aligned_cols=134 Identities=14% Similarity=0.150 Sum_probs=82.4
Q ss_pred CeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeeccc
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQ 282 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~ 282 (487)
|+...+...+++++.+.++.. ++.+..+-+..|. ..+..|. +.++++++.++ +.+.+-..-+|
T Consensus 135 ~~~~t~~~~~~e~~~~~a~~~~~~G~~~iKlKvg~-----------~~~~~d~----~~v~avR~~~~~~~L~vDaN~~w 199 (389)
T 3s5s_A 135 TTDITITTGSPERAEEAARRAAAMGFRALKVKVGG-----------RLAASDP----ARIEAIHAAAPGASLILDGNGGL 199 (389)
T ss_dssp ECCEEECSSCSHHHHHHHHHHHHHTCCEEEEECCG-----------GGTTTHH----HHHHHHHHHCTTCEEEEECTTCS
T ss_pred EEEeeecCCCHHHHHHHHHHHHHcCCCeEEEEecC-----------CChHHHH----HHHHHHHHhCCCCeEEEECCCCC
Confidence 444445556777777666544 4446655554432 0122233 34555666652 23333222245
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+..+..++++.+++.+.+-..| +| + . ...+++..+++++.+++||.+.-.+.+..++.++++...+|.|++
T Consensus 200 ~~~~A~~~~~~L~~~~~~i~~i-----Ee-P-~-~~~d~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~~~a~d~v~~ 270 (389)
T 3s5s_A 200 TAGEALALVAHARRLGADVALL-----EQ-P-V-PRDDWDGMKEVTRRAGVDVAADESAASAEDVLRVAAERAATVVNI 270 (389)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEE-----EC-C-S-CTTCHHHHHHHHHHSSSCEEESTTCSSHHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHHHHhhCCCCeEEE-----EC-C-C-CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCEEEe
Confidence 6667778888884333332233 12 1 1 234789999999999999999999999999999997777888876
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.11 Score=53.06 Aligned_cols=128 Identities=12% Similarity=0.209 Sum_probs=84.8
Q ss_pred Ceeeeec-cCCHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecc
Q psy7343 205 PLIIQFC-GNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIY 281 (487)
Q Consensus 205 Pv~Vqi~-g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~ 281 (487)
|+...+. +.+++++.+.++. +++.+..+.+..| | ..|. +.++++++++ ++.+.+-..-+
T Consensus 151 ~~~~~~g~~~~~e~~~~~a~~~~~~G~~~~KiKvg-~-------------~~d~----~~v~avr~a~~~~~l~vDaN~~ 212 (393)
T 1wuf_A 151 KVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIA-P-------------NKDI----QFVEAVRKSFPKLSLMADANSA 212 (393)
T ss_dssp EBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECB-T-------------TBSH----HHHHHHHTTCTTSEEEEECTTC
T ss_pred eeeEEeCCCCCHHHHHHHHHHHHHHhhHhheeccC-h-------------HHHH----HHHHHHHHHcCCCEEEEECCCC
Confidence 4443343 3357777665554 4444666666533 1 1233 3456677665 33344433224
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.++. ++++.++++++..|-= + . ...+++..+++++.+++||.+.-.+.+..++.++++...+|.|++
T Consensus 213 ~~~~~a-~~~~~l~~~~i~~iEq--------P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~i 281 (393)
T 1wuf_A 213 YNREDF-LLLKELDQYDLEMIEQ--------P-F-GTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINL 281 (393)
T ss_dssp CCGGGH-HHHHTTGGGTCSEEEC--------C-S-CSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCHHHH-HHHHHHHhCCCeEEEC--------C-C-CCcCHHHHHHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCEEEe
Confidence 666777 8889999998887741 1 1 234688899999999999999999999999999997666898876
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.16 Score=48.92 Aligned_cols=189 Identities=15% Similarity=0.094 Sum_probs=97.4
Q ss_pred CceEEecCCCCCCHH-HHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccccc
Q psy7343 79 PRFILAPMVDASELP-WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMV 157 (487)
Q Consensus 79 ~~~~LAPMag~td~p-FR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma 157 (487)
.+++++||++.++.. .-..+.++|++.+++.. +++.... .....+.|+++|+... . .+ .|-
T Consensus 34 ~~~~l~p~~~~~~~~~~~~~~~~~g~~~i~~~~----~~~~~~~------~~~~~~~~~~v~~~~~----~-~~--~~d- 95 (273)
T 2qjg_A 34 HGVSNGPIKGLIDIRKTVNDVAEGGANAVLLHK----GIVRHGH------RGYGKDVGLIIHLSGG----T-AI--SPN- 95 (273)
T ss_dssp HHHHHCSCTTSSSHHHHHHHHHHHTCSEEEECH----HHHHSCC------CSSSCCCEEEEECEEC----C-TT--SSS-
T ss_pred cccccCCCcchhhHHHHHHHHHhcCCCEEEeCH----HHHHHHH------HhhcCCCCEEEEEcCC----C-cC--CCC-
Confidence 356689999999885 22334678998887643 2211110 0112356888886321 1 10 110
Q ss_pred CCCc--hHHHHHHHHhCCccc---eecc-ccchhhhcChhHHHHHHhc-CCCCCCeeeeec--------cCCHHHHHHHH
Q psy7343 158 DASE--LPWRLLSRRYGSHLC---YTPM-VSAHQFIADKKLRQEILMS-TPEDRPLIIQFC--------GNDSKNLTEAA 222 (487)
Q Consensus 158 ~~td--~~fr~i~~~~Ga~l~---~t~~-v~~~~Ll~~~~~~~~~l~~-~~~~~Pv~Vqi~--------g~d~~~~~~aa 222 (487)
..++ ..--..+.+.|++.. .... .....++.. ..++.+. ...+.|+++.+. +.+++...+++
T Consensus 96 ~~~~~~~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~---~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a 172 (273)
T 2qjg_A 96 PLKKVIVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRD---LGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAA 172 (273)
T ss_dssp TTCCEECSCHHHHHHTTCSEEEEEEEETSTTHHHHHHH---HHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCEEEEEEecCCCCHHHHHHH---HHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHH
Confidence 0110 111123456787654 1110 011111111 2222221 122567777651 23556667776
Q ss_pred HhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc-cccHHHHHHHHHHcCCc
Q psy7343 223 KLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD-VNKTVEYARMLERAGCQ 300 (487)
Q Consensus 223 ~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d-~~~~~e~a~~le~~G~d 300 (487)
+.+++. .|.|-++. . .+++.+.++. +.+++||++.+.++.+ .++..+.++.+.++|++
T Consensus 173 ~~a~~~Gad~i~~~~------------~----~~~~~l~~i~----~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~ 232 (273)
T 2qjg_A 173 RLGAELGADIVKTSY------------T----GDIDSFRDVV----KGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAA 232 (273)
T ss_dssp HHHHHTTCSEEEECC------------C----SSHHHHHHHH----HHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCCEEEECC------------C----CCHHHHHHHH----HhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 777665 56655541 1 2577766644 4568999998744321 23344445555589999
Q ss_pred EEEEEcccc
Q psy7343 301 LLAVHGRTV 309 (487)
Q Consensus 301 ~I~VhgRt~ 309 (487)
+|.+ ||.-
T Consensus 233 gv~v-g~~i 240 (273)
T 2qjg_A 233 GVAV-GRNI 240 (273)
T ss_dssp EEEC-CHHH
T ss_pred EEEe-eHHh
Confidence 9999 7754
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.21 Score=48.38 Aligned_cols=150 Identities=14% Similarity=0.160 Sum_probs=83.4
Q ss_pred CCCchHHHHHHHHhCCccceeccccchhhhcChh----HHHHHH------hcCCCCCCeeeeec-c---CCHHHHHHHHH
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK----LRQEIL------MSTPEDRPLIIQFC-G---NDSKNLTEAAK 223 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~----~~~~~l------~~~~~~~Pv~Vqi~-g---~d~~~~~~aa~ 223 (487)
.+-|..+..+..+.|.+.+.+.--.+...+-.++ -..+++ .......+|++-+- | .++++..+.+.
T Consensus 23 tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~ 102 (275)
T 1o66_A 23 TAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAA 102 (275)
T ss_dssp ECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHH
T ss_pred eCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHHHHH
Confidence 3456677788888888776543211111111110 122222 11122234555543 2 25777776555
Q ss_pred hhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc--------------c--ccc
Q psy7343 224 LAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ--------------D--VNK 286 (487)
Q Consensus 224 ~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~--------------d--~~~ 286 (487)
++.++ +++|.|--| +...+.++++.++ ++||...+.+.+ + .++
T Consensus 103 rl~kaGa~aVklEdg-------------------~e~~~~I~al~~a-gIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~ 162 (275)
T 1o66_A 103 ELMAAGAHMVKLEGG-------------------VWMAETTEFLQMR-GIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQA 162 (275)
T ss_dssp HHHHTTCSEEEEECS-------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGTTC-----------CHHH
T ss_pred HHHHcCCcEEEECCc-------------------HHHHHHHHHHHHc-CCCeEeeeccCceeecccCCeEEEeChHHHHH
Confidence 55445 444433322 1233444445443 889986665421 1 135
Q ss_pred HHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 287 ~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
..+-++.++++|++.|.+.+- + -+.+++|.+.+++|+|+-|
T Consensus 163 ~i~rA~a~~eAGA~~ivlE~v-----------p-~~~a~~it~~l~iP~igIG 203 (275)
T 1o66_A 163 LLNDAKAHDDAGAAVVLMECV-----------L-AELAKKVTETVSCPTIGIG 203 (275)
T ss_dssp HHHHHHHHHHTTCSEEEEESC-----------C-HHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHcCCcEEEEecC-----------C-HHHHHHHHHhCCCCEEEEC
Confidence 666778899999999998432 1 3678899999999999865
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.1 Score=51.79 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=57.6
Q ss_pred HHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEE
Q psy7343 260 TNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVI 336 (487)
Q Consensus 260 ~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi 336 (487)
.+.++++++.. ..++.+-+ ++..+ ++.+.++|+|.|++.. .+.+.++++.+.+ ++++.
T Consensus 219 ~~Av~~ar~~~p~~kIeVEV------dtlde-a~eAl~aGaD~I~LDn------------~~~~~l~~av~~l~~~v~ie 279 (320)
T 3paj_A 219 RQAISTAKQLNPGKPVEVET------ETLAE-LEEAISAGADIIMLDN------------FSLEMMREAVKINAGRAALE 279 (320)
T ss_dssp HHHHHHHHHHSTTSCEEEEE------SSHHH-HHHHHHTTCSEEEEES------------CCHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhCCCCeEEEEE------CCHHH-HHHHHHcCCCEEEECC------------CCHHHHHHHHHHhCCCCeEE
Confidence 44555555544 34566644 34444 4444568999999942 1345566665554 78999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++|||+ .+.+.++. ++|+|.+.+|.--
T Consensus 280 aSGGIt-~~~I~~~a-~tGVD~isvGalt 306 (320)
T 3paj_A 280 NSGNIT-LDNLKECA-ETGVDYISVGALT 306 (320)
T ss_dssp EESSCC-HHHHHHHH-TTTCSEEECTHHH
T ss_pred EECCCC-HHHHHHHH-HcCCCEEEECcee
Confidence 999996 78888887 7999999999743
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.3 Score=47.56 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=58.4
Q ss_pred CHHHHHH-HHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc---------
Q psy7343 214 DSKNLTE-AAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ--------- 282 (487)
Q Consensus 214 d~~~~~~-aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~--------- 282 (487)
++++..+ +.+.++++ +++|.|--| +...+.++++.++ ++||..-+-+.+
T Consensus 110 s~~~a~~na~rl~~eaGa~aVklEdg-------------------~e~~~~I~al~~a-gIpV~gHiGLtPqsv~~~ggf 169 (281)
T 1oy0_A 110 GPTAALAAATRFLKDGGAHAVKLEGG-------------------ERVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGF 169 (281)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEBS-------------------GGGHHHHHHHHHH-TCCEEEEEECCC---------
T ss_pred CHHHHHHHHHHHHHHhCCeEEEECCc-------------------HHHHHHHHHHHHC-CCCEEeeecCCcceecccCCe
Confidence 5666555 66777766 444444322 1223344445443 788874332211
Q ss_pred -------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 283 -------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 283 -------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
..++..+-++.++++|++.|.+.+- + -+.+++|.+.+++|+|+-|
T Consensus 170 ~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v-----------p-~~~a~~it~~l~iP~igIG 221 (281)
T 1oy0_A 170 RVQGRGDAAEQTIADAIAVAEAGAFAVVMEMV-----------P-AELATQITGKLTIPTVGIG 221 (281)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCSEEEEESC-----------C-HHHHHHHHHHCSSCEEEES
T ss_pred EEEeCcHHHHHHHHHHHHHHHcCCcEEEEecC-----------C-HHHHHHHHHhCCCCEEEeC
Confidence 1235666778899999999999432 1 3678899999999999865
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.072 Score=52.10 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=59.3
Q ss_pred HHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEE
Q psy7343 260 TNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVI 336 (487)
Q Consensus 260 ~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi 336 (487)
.+.++.+++.. ..|+.+-. ++. +-++.+.++|+|.|++..- ..+.++++.+.+ ++++.
T Consensus 186 ~~Av~~ar~~~~~~~IeVEv------~tl-~ea~eAl~aGaD~I~LDn~------------~~~~l~~av~~~~~~v~ie 246 (287)
T 3tqv_A 186 AKAVTKAKKLDSNKVVEVEV------TNL-DELNQAIAAKADIVMLDNF------------SGEDIDIAVSIARGKVALE 246 (287)
T ss_dssp HHHHHHHHHHCTTSCEEEEE------SSH-HHHHHHHHTTCSEEEEESC------------CHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHhhCCCCcEEEEe------CCH-HHHHHHHHcCCCEEEEcCC------------CHHHHHHHHHhhcCCceEE
Confidence 34445555442 35666654 344 4445555689999999421 234555555544 78999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++||| +.+.+.++. ++|+|.+.+|.-...-|++
T Consensus 247 aSGGI-t~~~i~~~a-~tGVD~IsvGalt~sa~~l 279 (287)
T 3tqv_A 247 VSGNI-DRNSIVAIA-KTGVDFISVGAITKHIKAI 279 (287)
T ss_dssp EESSC-CTTTHHHHH-TTTCSEEECSHHHHSBCCC
T ss_pred EECCC-CHHHHHHHH-HcCCCEEEEChhhcCCccc
Confidence 99999 577888887 8999999998654443443
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.4 Score=46.87 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=91.9
Q ss_pred CCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEE-ee
Q psy7343 202 EDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK-IR 279 (487)
Q Consensus 202 ~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vK-iR 279 (487)
.+.||.+.+. |.+.+...++.+ ..|+-| -..+. --.+..|-+...++++.... .++.|-+- ++
T Consensus 79 ~~VPValHlDHg~~~e~i~~ai~---~GFtSV----------MiDgS-~~p~eeNi~~Tk~vv~~ah~-~gvsVEaElG~ 143 (288)
T 3q94_A 79 ITVPVAIHLDHGSSFEKCKEAID---AGFTSV----------MIDAS-HHPFEENVETTKKVVEYAHA-RNVSVEAELGT 143 (288)
T ss_dssp CCSCEEEEEEEECSHHHHHHHHH---HTCSEE----------EECCT-TSCHHHHHHHHHHHHHHHHT-TTCEEEEEESB
T ss_pred CCCcEEEECCCCCCHHHHHHHHH---cCCCeE----------EEeCC-CCCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 4689999998 666655444433 223222 22211 11224456667777765543 46666654 33
Q ss_pred cccc----------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC--CCHHHHHHHHhhCCCcEEEcCCCCCH-HH
Q psy7343 280 IYQD----------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL--ASWEHITAVRKALTIPVIANGNIQCL-AD 346 (487)
Q Consensus 280 ~~~d----------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~--~~~~~i~~i~~~~~iPVi~nGgI~s~-~d 346 (487)
+|+. ..++++..+..+++|+|.+.+.=.|.-+ .|.|. -+++.+++|++.+++|++.-||=..+ ++
T Consensus 144 vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG--~Y~~~p~Ld~~~L~~I~~~v~vpLVlHGgSG~~~e~ 221 (288)
T 3q94_A 144 VGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHG--PYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTAD 221 (288)
T ss_dssp CBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSS--CCSSSCCCCHHHHHHHHHHHCSCEEECCCTTCCHHH
T ss_pred eccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcccC--CcCCCCccCHHHHHHHHHhcCCCEEEeCCCCCCHHH
Confidence 3321 1467888888999999999883233222 25443 47899999999999999987765544 46
Q ss_pred HHHHHHhcCCcEEEeccc
Q psy7343 347 VEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa 364 (487)
+.+++ ..|+.-|=|++.
T Consensus 222 i~~ai-~~Gv~KiNi~Td 238 (288)
T 3q94_A 222 IEKAI-SLGTSKINVNTE 238 (288)
T ss_dssp HHHHH-HTTEEEEEECHH
T ss_pred HHHHH-HcCCeEEEEChH
Confidence 88888 788888877764
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.19 Score=49.51 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEcccc-CCCCCCCC---CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTV-DQRGMNTG---LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~-~~~g~~~g---~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
...+.++..++.|++.|++--+.. ... .+.| ..+.+.++++++.+++||++-+++...++++.+. ..|||.| -
T Consensus 29 ~~~e~A~~ye~~GA~~lsvLe~~~~Di~-~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~-aaGAD~I-d 105 (297)
T 4adt_A 29 KNVEQAKIAEKAGAIGVMILENIPSELR-NTDGVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILE-ELKVDML-D 105 (297)
T ss_dssp SSHHHHHHHHHHTCSEEEECCCCC------CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHH-HTTCSEE-E
T ss_pred CcHHHHHHHHHcCCCEEEEecCCCCcch-hcCCcccCCCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHH-HcCCCEE-E
Confidence 345889999999999999952211 111 1122 3478999999999999999987888877777776 7999999 2
Q ss_pred ccccccCcccccC
Q psy7343 362 AEGNLYNPALFTG 374 (487)
Q Consensus 362 GRa~l~~P~lf~~ 374 (487)
....+..+.++..
T Consensus 106 ~s~~~~~~~li~~ 118 (297)
T 4adt_A 106 ESEVLTMADEYNH 118 (297)
T ss_dssp EETTSCCSCSSCC
T ss_pred cCCCCCHHHHHHH
Confidence 2222344556543
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.12 Score=50.42 Aligned_cols=119 Identities=17% Similarity=0.156 Sum_probs=78.9
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARM 293 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~ 293 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.++- |++.+- ..+..+..+.++.
T Consensus 17 D~~~l~~lv~~li~~--------Gv-~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg-~~~t~~ai~la~~ 85 (286)
T 2r91_A 17 DPELFANHVKNITSK--------GV-DVVFVAGTTGLGPALSLQEKMELTDAATSAARR-VIVQVA-SLNADEAIALAKY 85 (286)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS-EEEECC-CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCC-EEEeeC-CCCHHHHHHHHHH
Confidence 677777777765555 44 445566667776544667777888888777654 666541 1244578888999
Q ss_pred HHHcCCcEEEEEccccCCCCCCCC-CC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHH
Q psy7343 294 LERAGCQLLAVHGRTVDQRGMNTG-LA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEA 349 (487)
Q Consensus 294 le~~G~d~I~VhgRt~~~~g~~~g-~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~ 349 (487)
+++.|+|++++..- .|.. +. .++.++.|.+++++||+. | |--.+++.+.+
T Consensus 86 A~~~Gadavlv~~P------~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 145 (286)
T 2r91_A 86 AESRGAEAVASLPP------YYFPRLSERQIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKE 145 (286)
T ss_dssp HHHTTCSEEEECCS------CSSTTCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSSCCCHHHHHH
T ss_pred HHhcCCCEEEEcCC------cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeChhhcCCCCCHHHHHh
Confidence 99999999999322 1322 22 246778888889999874 4 43356666665
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.28 Score=47.34 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=73.8
Q ss_pred ccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCC-CCCCHHHHHHHH
Q psy7343 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT-GLASWEHITAVR 328 (487)
Q Consensus 250 ~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~-g~~~~~~i~~i~ 328 (487)
+....+.+++.++. + ++.||.+|-....+.++..+.++.+...|...+++-=|+......|. ...++..+..++
T Consensus 114 a~~~~n~~ll~~~a----~-~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk 188 (262)
T 1zco_A 114 ARNSQNFELLKEVG----K-VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVK 188 (262)
T ss_dssp GGGTTCHHHHHHHT----T-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHH
T ss_pred cccccCHHHHHHHH----h-cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHH
Confidence 33445777766643 2 69999999755556778888889999999865555334321111232 234667888899
Q ss_pred hhCCCcEEEcCCCCCHH-----H-HHHHHHhcCCcEEEeccccccCccc
Q psy7343 329 KALTIPVIANGNIQCLA-----D-VEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 329 ~~~~iPVi~nGgI~s~~-----d-a~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+..++||++.-+-.+.. . +.... ..|++|+||=+-+--|-.+
T Consensus 189 ~~~~~pVi~d~sH~~g~~~~v~~~~~aAv-a~Ga~Gl~iE~H~~~d~al 236 (262)
T 1zco_A 189 ELSHLPIIVDPSHPAGRRSLVIPLAKAAY-AIGADGIMVEVHPEPEKAL 236 (262)
T ss_dssp HHBSSCEEECSSTTTCSGGGHHHHHHHHH-HTTCSEEEEEBCSSGGGCS
T ss_pred hhhCCCEEEEcCCCCCccchHHHHHHHHH-HcCCCEEEEEecCCccccC
Confidence 98899997643332221 2 33344 6899999998865444444
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.13 Score=52.93 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=81.4
Q ss_pred cCCHHHHHHHHHhhC-CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHH
Q psy7343 212 GNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 212 g~d~~~~~~aa~~~~-~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~ 288 (487)
..+++...+.++... +.+..+-+..|. +++...+.++++++++ ++.+.+..--+|+..+..
T Consensus 186 ~~~~~~~~~~a~~~~~~G~~~~K~k~g~----------------~~~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~A~ 249 (412)
T 4h1z_A 186 EDTRAKRAELAAAWQAKGFSSFKFASPV----------------ADDGVAKEMEILRERLGPAVRIACDMHWAHTASEAV 249 (412)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEEGGG----------------CTTCHHHHHHHHHHHHCSSSEEEEECCSCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCcceecccccc----------------chhhHHHHHHHHHhccCCeEEEEeccccCCCHHHHH
Confidence 345677777665544 345554443221 1122233455666665 344555433356777888
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
++++.+++.|+..+- | + ....+++..+++++.+++||.+.-.+.+..|+.++++...+|.++
T Consensus 250 ~~~~~l~~~~l~~iE-------q-P--~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~div~ 311 (412)
T 4h1z_A 250 ALIKAMEPHGLWFAE-------A-P--VRTEDIDGLARVAASVSTAIAVGEEWRTVHDMVPRVARRALAIVQ 311 (412)
T ss_dssp HHHHHHGGGCEEEEE-------C-C--SCTTCHHHHHHHHHHCSSEEEECTTCCSHHHHHHHHHTTCCSEEC
T ss_pred HHHHhhcccccceec-------C-C--CCccchHHHHHHHhhcCCccccCCcccchHhHHHHHHcCCCCEEE
Confidence 899999998876552 1 1 123478999999999999999999999999999999766677664
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.11 Score=49.38 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhhccCcEEEEeeccc-----ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRIYQ-----DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~~~-----d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
.+..+++.+...- .+++..+... +.+...++++.+++.|+.+|.+ + ..+.++++++.++
T Consensus 6 ~~~~~~~~~~~~~--~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~-~-------------~~~~i~~ir~~v~ 69 (232)
T 3igs_A 6 LLEQLDKNIAASG--GLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRI-E-------------GIDNLRMTRSLVS 69 (232)
T ss_dssp HHHHHHHHHHHHC--CEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEE-E-------------SHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhcC--CEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEE-C-------------CHHHHHHHHHhcC
Confidence 4455555552222 3555544422 2346789999999999999887 1 2578999999999
Q ss_pred CcEEE-c----CC--C---CCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 333 IPVIA-N----GN--I---QCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 333 iPVi~-n----Gg--I---~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+||++ + || + .+.+++.+++ +.|||.|.++.+...+|..
T Consensus 70 ~Pvig~~k~d~~~~~~~I~~~~~~i~~~~-~~Gad~V~l~~~~~~~p~~ 117 (232)
T 3igs_A 70 VPIIGIIKRDLDESPVRITPFLDDVDALA-QAGAAIIAVDGTARQRPVA 117 (232)
T ss_dssp SCEEEECBCCCSSCCCCBSCSHHHHHHHH-HHTCSEEEEECCSSCCSSC
T ss_pred CCEEEEEeecCCCcceEeCccHHHHHHHH-HcCCCEEEECccccCCHHH
Confidence 99985 1 33 3 4667888888 7899999999888878854
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.19 Score=51.30 Aligned_cols=126 Identities=10% Similarity=0.067 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHH
Q psy7343 212 GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~ 288 (487)
+.+.+.+.+.++.+.+ .+..+-+..|. .+++.-.+.++++++++ ++.+.+-.--+|+..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~G~~~~Kikvg~---------------~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~ 226 (388)
T 4h83_A 162 GEPLGSIADEMHNYQELGLAGVKFKVGG---------------LSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAV 226 (388)
T ss_dssp TCTTCSHHHHHHHHHHHTBSEEEEECSS---------------SCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCceEeecCCC---------------CCHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHH
Confidence 3344556655554443 46555554322 13333345566777776 345554433356777788
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++++.+++.++.+|- | + .....+++..+++++.+++||.+.-.+.+..|+.++++...+|.+++
T Consensus 227 ~~~~~l~~~~~~~iE-------e-P-~~~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~ 290 (388)
T 4h83_A 227 DLSRRIADLNIRWFE-------E-P-VEWHNDKRSMRDVRYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNF 290 (388)
T ss_dssp HHHHHTTTSCCCCEE-------S-C-BCSTTHHHHHHHHHHHSSSCEEECTTCSSHHHHHHHHHHTCCSEECC
T ss_pred HHHHHhhhcCcceee-------c-C-cccccchHHHHHHHhhcCCCccCCccccChHhHHHHHHcCCCCeEee
Confidence 888999888877652 2 1 22223578889999999999999999999999999997666887753
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.25 Score=49.69 Aligned_cols=129 Identities=19% Similarity=0.132 Sum_probs=82.8
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARM 293 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~ 293 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++. ...-.+||++.+-- .+..+..+.++.
T Consensus 45 D~~~l~~lv~~li~~--------Gv-~Gl~v~GtTGE~~~Ls~eEr~~vi~~-~~~grvpViaGvg~-~st~eai~la~~ 113 (344)
T 2hmc_A 45 DFDALVRKGKELIAD--------GM-SAVVYCGSMGDWPLLTDEQRMEGVER-LVKAGIPVIVGTGA-VNTASAVAHAVH 113 (344)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CCEEESSGGGTGGGSCHHHHHHHHHH-HHHTTCCEEEECCC-SSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEeCccCcChhhCCHHHHHHHHHH-HhCCCCcEEEecCC-CCHHHHHHHHHH
Confidence 667777777765555 44 45566676777654455555666665 22236899987611 144578888999
Q ss_pred HHHcCCcEEEEEccccCCCCCCCC-CC---CHHHHHHHHh-hCCCcEEE-c----CCCCCHHHHHHH-HHhcCCcEE
Q psy7343 294 LERAGCQLLAVHGRTVDQRGMNTG-LA---SWEHITAVRK-ALTIPVIA-N----GNIQCLADVEAC-LAQTGVAGV 359 (487)
Q Consensus 294 le~~G~d~I~VhgRt~~~~g~~~g-~~---~~~~i~~i~~-~~~iPVi~-n----GgI~s~~da~~~-l~~~Gad~V 359 (487)
+++.|+|++++..- .|.. +. .++.++.|.+ .+++||+. | |--.+++.+.++ .+...+-|+
T Consensus 114 A~~~Gadavlv~~P------~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P~tg~~l~~e~~~~L~a~~pnIvGi 184 (344)
T 2hmc_A 114 AQKVGAKGLMVIPR------VLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLFFALRAEHKNLVGF 184 (344)
T ss_dssp HHHHTCSEEEECCC------CSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCCCHHHHHHHHHHCTTEEEE
T ss_pred HHhcCCCEEEECCC------ccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecCccCCCcCHHHHHHHHhcCCCEEEE
Confidence 99999999999321 1322 21 2477788888 78999864 5 544688888888 543333333
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.036 Score=55.95 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=55.5
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhccCcEEEE
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCK 277 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~iPV~vK 277 (487)
.+.||++|... +. +.|+.+++. +|+|.+.. || |.++ ...++.+.++.+++.. ++||++.
T Consensus 216 ~~~PvivK~v~-~~----e~A~~a~~~GaD~I~vsn--------~G--G~~~d~~~~~~~~L~~i~~av~~--~ipVia~ 278 (352)
T 3sgz_A 216 TRLPIILKGIL-TK----EDAELAMKHNVQGIVVSN--------HG--GRQLDEVSASIDALREVVAAVKG--KIEVYMD 278 (352)
T ss_dssp CCSCEEEEEEC-SH----HHHHHHHHTTCSEEEECC--------GG--GTSSCSSCCHHHHHHHHHHHHTT--SSEEEEE
T ss_pred cCCCEEEEecC-cH----HHHHHHHHcCCCEEEEeC--------CC--CCccCCCccHHHHHHHHHHHhCC--CCeEEEE
Confidence 36899999763 33 334555554 77776631 11 2122 2345666666555432 6899999
Q ss_pred eecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 278 IRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 278 iR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
+ ++.+..++++.+. .|+|+|+| ||
T Consensus 279 G----GI~~g~Dv~kaLa-lGA~aV~i-Gr 302 (352)
T 3sgz_A 279 G----GVRTGTDVLKALA-LGARCIFL-GR 302 (352)
T ss_dssp S----SCCSHHHHHHHHH-TTCSEEEE-SH
T ss_pred C----CCCCHHHHHHHHH-cCCCEEEE-CH
Confidence 7 8889999999987 79999999 77
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.12 Score=50.51 Aligned_cols=120 Identities=11% Similarity=0.032 Sum_probs=79.2
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARM 293 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~ 293 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.++- |++.+- +.+..+..+.++.
T Consensus 18 D~~~l~~lv~~li~~--------Gv-~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-ViaGvg-~~~t~~ai~la~~ 86 (288)
T 2nuw_A 18 NVDALKTHAKNLLEK--------GI-DAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK-LIFQVG-SLNLNDVMELVKF 86 (288)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC-EEEECC-CSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHhCC-eEEeeC-CCCHHHHHHHHHH
Confidence 667777777765555 44 445566667776545677778888888877654 666541 1144578888999
Q ss_pred HHHcCCcEEEEEccccCCCCCCCC-CC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHH
Q psy7343 294 LERAGCQLLAVHGRTVDQRGMNTG-LA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEAC 350 (487)
Q Consensus 294 le~~G~d~I~VhgRt~~~~g~~~g-~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~ 350 (487)
+++.|+|++++..- .|.. +. .++.++.|.+.+++||+. | |--.+++.+.++
T Consensus 87 A~~~Gadavlv~~P------~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 147 (288)
T 2nuw_A 87 SNEMDILGVSSHSP------YYFPRLPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKSL 147 (288)
T ss_dssp HHTSCCSEEEECCC------CSSCSCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHTTT
T ss_pred HHhcCCCEEEEcCC------cCCCCCCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHHhcc
Confidence 99999999999322 1322 22 246778888889999864 4 433466655554
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.13 Score=50.38 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=57.7
Q ss_pred HHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEE
Q psy7343 260 TNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVI 336 (487)
Q Consensus 260 ~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi 336 (487)
.+.++.+++.. ..|+.+-. ++..+ ++.+.++|+|.||+..- ..+.++++.+.+ ++.+.
T Consensus 195 ~~Av~~ar~~~p~~kIeVEv------~tl~e-~~eAl~aGaDiImLDn~------------s~~~l~~av~~~~~~v~le 255 (300)
T 3l0g_A 195 TLAIQRLRKNLKNEYIAIEC------DNISQ-VEESLSNNVDMILLDNM------------SISEIKKAVDIVNGKSVLE 255 (300)
T ss_dssp HHHHHHHHHHSSSCCEEEEE------SSHHH-HHHHHHTTCSEEEEESC------------CHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhCCCCCEEEEE------CCHHH-HHHHHHcCCCEEEECCC------------CHHHHHHHHHhhcCceEEE
Confidence 44555555543 34555543 34444 44455689999999321 234444444433 68899
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++||| |.+.+.++. ++|+|.+.+|.-...-|++
T Consensus 256 aSGGI-t~~~i~~~A-~tGVD~IsvGalthsa~~l 288 (300)
T 3l0g_A 256 VSGCV-NIRNVRNIA-LTGVDYISIGCITNSFQNK 288 (300)
T ss_dssp EESSC-CTTTHHHHH-TTTCSEEECGGGTSSCCCC
T ss_pred EECCC-CHHHHHHHH-HcCCCEEEeCccccCCCcc
Confidence 99999 577888887 8999999999644333443
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.095 Score=51.52 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=58.2
Q ss_pred HHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEE
Q psy7343 260 TNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVI 336 (487)
Q Consensus 260 ~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi 336 (487)
.+.++++++.. ..++.+-+ ++..++ +.+.++|+|.|++..- +.+.++++.+.+ ++++.
T Consensus 197 ~~Av~~~r~~~p~~~ieVEv------dtlde~-~eAl~aGaD~I~LDn~------------~~~~l~~av~~i~~~v~ie 257 (298)
T 3gnn_A 197 GEALDAAFALNAEVPVQIEV------ETLDQL-RTALAHGARSVLLDNF------------TLDMMRDAVRVTEGRAVLE 257 (298)
T ss_dssp HHHHHHHHHHC--CCCEEEE------SSHHHH-HHHHHTTCEEEEEESC------------CHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEe------CCHHHH-HHHHHcCCCEEEECCC------------CHHHHHHHHHHhCCCCeEE
Confidence 34455555543 24444443 345444 4445589999999421 234455544433 68899
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++||| +.+.+.++. ++|+|.+.+|.....-|++
T Consensus 258 aSGGI-~~~~i~~~a-~tGVD~isvG~lt~sa~~l 290 (298)
T 3gnn_A 258 VSGGV-NFDTVRAIA-ETGVDRISIGALTKDVRAT 290 (298)
T ss_dssp EESSC-STTTHHHHH-HTTCSEEECGGGGTSCCCC
T ss_pred EEcCC-CHHHHHHHH-HcCCCEEEECCeecCCCcc
Confidence 99999 567788887 7999999999865544544
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.065 Score=56.64 Aligned_cols=69 Identities=22% Similarity=0.382 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC--CHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA--SWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~--~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..+-++.|.++|+|.|.|..- .|.. -.+.++.+++.. +++||+ |+|.|.+.++.++ +.|||+|-+|
T Consensus 281 d~~eR~~aLv~AGvD~iviD~a--------hGhs~~v~~~i~~ik~~~p~~~via-GNVaT~e~a~~Li-~aGAD~vkVG 350 (556)
T 4af0_A 281 GDKDRLKLLAEAGLDVVVLDSS--------QGNSVYQIEFIKWIKQTYPKIDVIA-GNVVTREQAAQLI-AAGADGLRIG 350 (556)
T ss_dssp HHHHHHHHHHHTTCCEEEECCS--------CCCSHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHH-HHTCSEEEEC
T ss_pred cHHHHHHHHHhcCCcEEEEecc--------ccccHHHHHHHHHHHhhCCcceEEe-ccccCHHHHHHHH-HcCCCEEeec
Confidence 4677788899999999999211 1211 258889999887 788887 9999999999999 7999999987
Q ss_pred cc
Q psy7343 363 EG 364 (487)
Q Consensus 363 Ra 364 (487)
-|
T Consensus 351 iG 352 (556)
T 4af0_A 351 MG 352 (556)
T ss_dssp SS
T ss_pred CC
Confidence 65
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=94.59 E-value=0.67 Score=45.26 Aligned_cols=144 Identities=17% Similarity=0.269 Sum_probs=89.6
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. |.+.+...++.+ ..|.- +-..+. --.+..|-+...++++.... .++.|-+-+ ++
T Consensus 74 ~VPValHlDHg~~~e~i~~ai~---~GFtS----------VMiDgS-~lp~eeNi~~Tk~vv~~ah~-~gvsVEaElG~v 138 (286)
T 1gvf_A 74 NMPLALHLDHHESLDDIRRKVH---AGVRS----------AMIDGS-HFPFAENVKLVKSVVDFCHS-QDCSVEAELGRL 138 (286)
T ss_dssp TSCBEEEEEEECCHHHHHHHHH---TTCCE----------EEECCT-TSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred CCcEEEEcCCCCCHHHHHHHHH---cCCCe----------EEECCC-CCCHHHHHHHHHHHHHHHHH-cCCEEEEEEeec
Confidence 579999988 666554444432 22322 222221 11224556667777765543 366665543 22
Q ss_pred cc--c----------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC--CCHHHHHHHHhhCCCcEEEcCCCCC-HH
Q psy7343 281 YQ--D----------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL--ASWEHITAVRKALTIPVIANGNIQC-LA 345 (487)
Q Consensus 281 ~~--d----------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~--~~~~~i~~i~~~~~iPVi~nGgI~s-~~ 345 (487)
|+ | ..++++..+..+++|+|.+.+.=.|.-+ .|.|. -+++.+++|++.+++|++.-||=.. .+
T Consensus 139 gg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~HG--~Y~~~p~Ld~~~L~~I~~~~~vpLVlHGgSG~~~e 216 (286)
T 1gvf_A 139 GGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHG--LYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDE 216 (286)
T ss_dssp C-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSS--CCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHH
T ss_pred cCcccCcccccccccCCCHHHHHHHHHHHCCCEEEeecCcccc--CcCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHH
Confidence 22 1 1467888888999999999883233222 25443 4679999999999999998775544 45
Q ss_pred HHHHHHHhcCCcEEEeccc
Q psy7343 346 DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa 364 (487)
++.+++ ..|+.-|=|++.
T Consensus 217 ~i~~ai-~~Gv~KiNi~Td 234 (286)
T 1gvf_A 217 FVRRTI-ELGVTKVNVATE 234 (286)
T ss_dssp HHHHHH-HTTEEEEEECHH
T ss_pred HHHHHH-HCCCeEEEEChH
Confidence 688888 688888877763
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.13 Score=52.45 Aligned_cols=83 Identities=11% Similarity=0.003 Sum_probs=59.5
Q ss_pred CeeeeeccC----------CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCc
Q psy7343 205 PLIIQFCGN----------DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 205 Pv~Vqi~g~----------d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iP 273 (487)
||+++|... +.+++.++++.+++. .|.|++..+. .. .. + . +. + ++.+++.+++|
T Consensus 245 ~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-~~----~~-~---~--~~---~-~~~ir~~~~iP 309 (379)
T 3aty_A 245 RVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGD-MV----NQ-Q---I--GD---V-VAWVRGSYSGV 309 (379)
T ss_dssp GEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSC-TT----SC-C---C--CC---H-HHHHHTTCCSC
T ss_pred eEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCC-cC----CC-C---c--cH---H-HHHHHHHCCCc
Confidence 799988742 346778889988887 8999888653 10 00 0 1 11 4 56688888999
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
|++++ ++ +..++.+.+++.++|.|++ ||.
T Consensus 310 vi~~G----~i-t~~~a~~~l~~g~aD~V~i-gR~ 338 (379)
T 3aty_A 310 KISNL----RY-DFEEADQQIREGKVDAVAF-GAK 338 (379)
T ss_dssp EEEES----SC-CHHHHHHHHHTTSCSEEEE-SHH
T ss_pred EEEEC----CC-CHHHHHHHHHcCCCeEEEe-cHH
Confidence 99998 44 5677777777767999999 885
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.23 Score=47.87 Aligned_cols=151 Identities=22% Similarity=0.216 Sum_probs=82.5
Q ss_pred CCCchHHHHHHHHhCCccceeccccchhhhcChh----HHHHHH------hcCCCCCCeeeeec-c--CCHHHHHHHHHh
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK----LRQEIL------MSTPEDRPLIIQFC-G--NDSKNLTEAAKL 224 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~----~~~~~l------~~~~~~~Pv~Vqi~-g--~d~~~~~~aa~~ 224 (487)
.+-|..+..+..+.|.+.+.+.--.+...+-.++ -..+++ .......+|++-+- | .++++..+.+.+
T Consensus 23 tayD~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a~r 102 (264)
T 1m3u_A 23 TAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAAT 102 (264)
T ss_dssp ECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHH
T ss_pred eCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHHHH
Confidence 3456777788888898877653211111111110 012222 11122234555543 2 167766665555
Q ss_pred hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc--------------c---cccH
Q psy7343 225 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ--------------D---VNKT 287 (487)
Q Consensus 225 ~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~--------------d---~~~~ 287 (487)
+.++ |+ ..+...|. +...+.++++.++ ++||..-+-+.+ + .++.
T Consensus 103 l~ka--------Ga-~aVklEgg---------~e~~~~I~al~~a-gipV~gHiGLtPq~v~~~ggf~v~grt~~~a~~~ 163 (264)
T 1m3u_A 103 VMRA--------GA-NMVKIEGG---------EWLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQL 163 (264)
T ss_dssp HHHT--------TC-SEEECCCS---------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHH
T ss_pred HHHc--------CC-CEEEECCc---------HHHHHHHHHHHHC-CCCeEeeecCCceeecccCCeEEEeCCHHHHHHH
Confidence 5445 33 22222221 1233444555543 799985443321 1 1345
Q ss_pred HHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 288 VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 288 ~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
.+-++.++++|++.|.+.+- + -+.+++|.+.+++|+|+-|
T Consensus 164 i~rA~a~~eAGA~~ivlE~v-----------p-~~~a~~it~~l~iP~igIG 203 (264)
T 1m3u_A 164 LSDALALEAAGAQLLVLECV-----------P-VELAKRITEALAIPVIGIG 203 (264)
T ss_dssp HHHHHHHHHHTCCEEEEESC-----------C-HHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHCCCcEEEEecC-----------C-HHHHHHHHHhCCCCEEEeC
Confidence 67778899999999998432 1 3678899999999999865
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.1 Score=54.80 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
...+.++.+.+.|+|.|.+++- . + .. ...++.++++++.+ ++|++ .|+|.+.+++.+++ +.|+|+|.+|.
T Consensus 233 ~~~~~a~~l~~~G~d~ivi~~a-~---g-~~-~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~-~~Gad~I~vg~ 303 (491)
T 1zfj_A 233 DTFERAEALFEAGADAIVIDTA-H---G-HS-AGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALY-DAGVDVVKVGI 303 (491)
T ss_dssp THHHHHHHHHHHTCSEEEECCS-C---T-TC-HHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHH-HTTCSEEEECS
T ss_pred hHHHHHHHHHHcCCCeEEEeee-c---C-cc-hhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHH-HcCCCEEEECc
Confidence 4567788889999999999651 1 1 11 12468899999998 89999 79999999999998 79999999985
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.12 Score=53.07 Aligned_cols=65 Identities=20% Similarity=0.439 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCcEEEEEccccCCCCCCCCCC--CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 288 VEYARMLERAGCQLLAVHGRTVDQRGMNTGLA--SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 288 ~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~--~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+.++.+.++|+|.|.+. -+ .|.. ..+.++++++..++||++ |++.|.++++.+. +.|||+|.+|
T Consensus 146 ~e~~~~lveaGvdvIvld-ta-------~G~~~~~~e~I~~ik~~~~i~Vi~-g~V~t~e~A~~a~-~aGAD~I~vG 212 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLD-SA-------HGHSLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELI-ENGADGIKVG 212 (400)
T ss_dssp CHHHHHHHHHTCSEEEEC-CS-------CCSBHHHHHHHHHHHTTCCCEEEE-EEECSHHHHHHHH-HTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEe-CC-------CCCcccHHHHHHHHHhcCCCeEEE-eecCCHHHHHHHH-HcCCCEEEEe
Confidence 678889999999999882 11 1112 257888999888999987 7899999999988 7899999996
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.089 Score=53.03 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=70.8
Q ss_pred hhhhcChhHHHHHHh--cCCCCCCeeeeecc-CCHHHHHHHHHhhCCc--CcEEEeecCC---------CcceeeccC--
Q psy7343 184 HQFIADKKLRQEILM--STPEDRPLIIQFCG-NDSKNLTEAAKLAEPH--CDGIDINIGC---------PQMVAKRGH-- 247 (487)
Q Consensus 184 ~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g-~d~~~~~~aa~~~~~~--~d~IdiN~Gc---------P~~i~~~gr-- 247 (487)
..+..+++...++++ ......|+.+|+.. .+.......+..+.+. .+.+..+-+. ......+.+
T Consensus 172 ~~l~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~ 251 (354)
T 3tjx_A 172 PQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQG 251 (354)
T ss_dssp --CTTSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGG
T ss_pred hhhccCHHHHHHHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhhcccchhheecccccccccccccccccccCccc
Confidence 345567777766664 23346899999984 3444444444443332 3333322111 001111111
Q ss_pred ccc-cccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 248 YGA-YLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 248 ~G~-~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.|+ .....++...+++..+++.+ ++||+..+ ++.+..|+.+++. +|||.|+| ++.
T Consensus 252 ~GGlSG~~~~~~a~~~v~~~~~~~~~~pIIg~G----GI~s~~Da~e~i~-aGAs~Vqv-~Ta 308 (354)
T 3tjx_A 252 FGGLGGRYVLPTALANINAFYRRCPGKLIFGCG----GVYTGEDAFLHVL-AGASMVQV-GTA 308 (354)
T ss_dssp EEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEES----SCCSHHHHHHHHH-HTEEEEEE-CHH
T ss_pred ccccCchhhHHHHHHHHHHHHHhcCCCcEEEeC----CcCCHHHHHHHHH-cCCCEEEE-Chh
Confidence 121 23456777888888887765 68999987 8889999999884 89999999 653
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.37 Score=44.30 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh-ccCcEEEEeecccccccHHHH
Q psy7343 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-VQVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-~~iPV~vKiR~~~d~~~~~e~ 290 (487)
-.+.++..+.++.+....|.|++. .|... . .| + ++++.+++. .++||.++.-+. + ....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~diie~G--~p~~~-~---~g------~----~~i~~ir~~~~~~~i~~~~~~~-~--~~~~~ 69 (211)
T 3f4w_A 9 ELTLPEAMVFMDKVVDDVDIIEVG--TPFLI-R---EG------V----NAIKAIKEKYPHKEVLADAKIM-D--GGHFE 69 (211)
T ss_dssp SCCHHHHHHHHHHHGGGCSEEEEC--HHHHH-H---HT------T----HHHHHHHHHCTTSEEEEEEEEC-S--CHHHH
T ss_pred CCCHHHHHHHHHHhhcCccEEEeC--cHHHH-h---cc------H----HHHHHHHHhCCCCEEEEEEEec-c--chHHH
Confidence 346777777777665456777763 34321 1 11 2 455567766 478998865332 1 22345
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCH-HHHHHHHhhCCCcEEEc-CCCCCH-HHHHHHHHhcCCcEEEeccc
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASW-EHITAVRKALTIPVIAN-GNIQCL-ADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~-~~i~~i~~~~~iPVi~n-GgI~s~-~da~~~l~~~Gad~VmiGRa 364 (487)
++.+.++|+|+|++|+-.. ..+. +.++.+++ .+++++.. =...|+ +.++++. +.|+|.|.+..+
T Consensus 70 ~~~~~~~Gad~v~v~~~~~--------~~~~~~~~~~~~~-~g~~~~v~~~~~~t~~~~~~~~~-~~g~d~i~v~~g 136 (211)
T 3f4w_A 70 SQLLFDAGADYVTVLGVTD--------VLTIQSCIRAAKE-AGKQVVVDMICVDDLPARVRLLE-EAGADMLAVHTG 136 (211)
T ss_dssp HHHHHHTTCSEEEEETTSC--------HHHHHHHHHHHHH-HTCEEEEECTTCSSHHHHHHHHH-HHTCCEEEEECC
T ss_pred HHHHHhcCCCEEEEeCCCC--------hhHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHH-HcCCCEEEEcCC
Confidence 8888999999999986521 1122 33344443 36766642 345565 4456665 789999877533
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.22 Score=51.83 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHhh-CC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHH
Q psy7343 213 NDSKNLTEAAKLA-EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 213 ~d~~~~~~aa~~~-~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e 289 (487)
.+++++++.++.+ ++ .|..+-+..|. .+++.-.+.++++++++ ++++.+-.--+|+..+..+
T Consensus 190 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~---------------~~~~~Di~~v~avRea~~~~~L~vDaN~~w~~~~Ai~ 254 (445)
T 3va8_A 190 LDPEGVVKQAKKIIDEYGFKAIKLKGGV---------------FPPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKW 254 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSS---------------SCHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCC---------------CCHHHHHHHHHHHHHhCCCCcEeeeCCCCCCHHHHHH
Confidence 4788887766644 44 46555554432 13344445666777766 4455554433566677788
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+++.+++. +..|- | + . .+++..+++++.+++||.+.-.+.+..++.++++...+|.+++
T Consensus 255 ~~~~L~~~-l~~iE-------e-P-~---~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~ 313 (445)
T 3va8_A 255 VAKELEGI-VEYLE-------D-P-A---GEIEGMAAVAKEASMPLATNMAVVAFDHLPPSILQDAVQVILS 313 (445)
T ss_dssp HHHHTTTT-CSEEE-------S-C-B---SHHHHHHHHHTTCSSCEEESSSCCSGGGHHHHHHTTCCSEEEE
T ss_pred HHHHHhhh-cCeEe-------e-c-C---cCHHHHHHHHHcCCCCEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence 88888876 66552 1 1 1 3688899999999999999889999999999997677888775
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.15 Score=47.17 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=60.8
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcE-EEcCCCCCHHHHHH
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPV-IANGNIQCLADVEA 349 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPV-i~nGgI~s~~da~~ 349 (487)
+.|++..++. .|.++..+.++.+.+.|++.|.+.-. .....+.++++++.+++++ ++.|++.+.+++..
T Consensus 6 ~~~i~~~i~~-~d~~~~~~~~~~~~~~G~~~i~l~~~---------~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~ 75 (212)
T 2v82_A 6 KLPLIAILRG-ITPDEALAHVGAVIDAGFDAVEIPLN---------SPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDA 75 (212)
T ss_dssp SSCEEEECTT-CCHHHHHHHHHHHHHHTCCEEEEETT---------STTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHH
T ss_pred CCCEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCC---------ChhHHHHHHHHHHhCCCCeEEEeccccCHHHHHH
Confidence 4567776643 36667888899999999999988222 1223567788877777664 46688999999988
Q ss_pred HHHhcCCcEEEecc
Q psy7343 350 CLAQTGVAGVMTAE 363 (487)
Q Consensus 350 ~l~~~Gad~VmiGR 363 (487)
++ +.|||+|.+|.
T Consensus 76 a~-~~Gad~V~~~~ 88 (212)
T 2v82_A 76 LA-RMGCQLIVTPN 88 (212)
T ss_dssp HH-HTTCCEEECSS
T ss_pred HH-HcCCCEEEeCC
Confidence 88 78999998764
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.27 Score=51.21 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHhh-CC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHH
Q psy7343 213 NDSKNLTEAAKLA-EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 213 ~d~~~~~~aa~~~-~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e 289 (487)
.+++++.+.++.+ ++ .|..+-+..|. .+++.-.+.++++|+++ ++++.+-.--+|+..+..+
T Consensus 192 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~---------------~~~~~Di~~v~avRea~~d~~L~vDaN~~w~~~~Ai~ 256 (445)
T 3vdg_A 192 LDPDGIVAQARRMIDEYGFSAIKLKGGV---------------FAPEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVK 256 (445)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSS---------------SCHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCC---------------CCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHH
Confidence 5788887766644 44 46555554332 13344345666777766 4555554433566677788
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+++.+++. +..|-= + . .+++..+++++.+++||.+.-.+.+..++.++++...+|.+++
T Consensus 257 ~~~~L~~~-l~~iEe--------P-~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~ 315 (445)
T 3vdg_A 257 VAAGLEGV-LEYLED--------P-T---PGLDGMAEVAAQAPMPLATNMCVVAFDQLPAAVAKNSVQVVLS 315 (445)
T ss_dssp HHHHTTTT-CSEEEC--------C-S---SSHHHHHHHHHHCSSCEEESSSCCSGGGHHHHHHHTCCSEEEE
T ss_pred HHHHHhhH-HHeeeC--------C-C---CCHHHHHHHHhcCCCCEEcCCcCCCHHHHHHHHHcCCCCEEee
Confidence 88888877 665522 1 2 3788999999999999999989999999999997777888875
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.4 Score=43.93 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=73.7
Q ss_pred eeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeeccccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDV 284 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~ 284 (487)
+++-+...+.++..+.++.+.+..+.|+++.+. . .. .| ++ +++.+++.. +.|+.+-.-+. |+
T Consensus 3 li~a~d~~~~~~~~~~~~~~~~~v~~iev~~~~--~-~~---~g------~~----~i~~l~~~~~~~~i~~~l~~~-di 65 (207)
T 3ajx_A 3 LQVAIDLLSTEAALELAGKVAEYVDIIELGTPL--I-KA---EG------LS----VITAVKKAHPDKIVFADMKTM-DA 65 (207)
T ss_dssp EEEEECCSCHHHHHHHHHHHGGGCSEEEECHHH--H-HH---HC------TH----HHHHHHHHSTTSEEEEEEEEC-SC
T ss_pred EEEEeCCCCHHHHHHHHHHhhccCCEEEECcHH--H-Hh---hC------HH----HHHHHHHhCCCCeEEEEEEec-Cc
Confidence 344455567788888887776666888885443 1 11 11 33 455566666 78888733222 32
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH-HHHHHHHhhCCCcEEE-cCCCCCHHH-HHHHHHhcCCcEEEe
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW-EHITAVRKALTIPVIA-NGNIQCLAD-VEACLAQTGVAGVMT 361 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~-~~i~~i~~~~~iPVi~-nGgI~s~~d-a~~~l~~~Gad~Vmi 361 (487)
...+++.+.++|+|+|++|.-... ... +.++.+++ .++++.. .-...|+++ +..+. +.|+|.|.+
T Consensus 66 --~~~~~~~a~~~Gad~v~vh~~~~~--------~~~~~~~~~~~~-~g~~~gv~~~s~~~p~~~~~~~~-~~g~d~v~~ 133 (207)
T 3ajx_A 66 --GELEADIAFKAGADLVTVLGSADD--------STIAGAVKAAQA-HNKGVVVDLIGIEDKATRAQEVR-ALGAKFVEM 133 (207)
T ss_dssp --HHHHHHHHHHTTCSEEEEETTSCH--------HHHHHHHHHHHH-HTCEEEEECTTCSSHHHHHHHHH-HTTCSEEEE
T ss_pred --cHHHHHHHHhCCCCEEEEeccCCh--------HHHHHHHHHHHH-cCCceEEEEecCCChHHHHHHHH-HhCCCEEEE
Confidence 445678888999999999864210 112 22233332 2555522 223346666 44444 678999855
Q ss_pred ccc
Q psy7343 362 AEG 364 (487)
Q Consensus 362 GRa 364 (487)
..+
T Consensus 134 ~~~ 136 (207)
T 3ajx_A 134 HAG 136 (207)
T ss_dssp ECC
T ss_pred Eec
Confidence 433
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.3 Score=47.88 Aligned_cols=119 Identities=10% Similarity=0.015 Sum_probs=78.9
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARM 293 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~ 293 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.++- |++.+- ..+..+..+.++.
T Consensus 18 D~~~l~~lv~~li~~--------Gv-~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg-~~~t~~ai~la~~ 86 (293)
T 1w3i_A 18 DKEKLKIHAENLIRK--------GI-DKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVG-GLNLDDAIRLAKL 86 (293)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECC-CSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccccChhhCCHHHHHHHHHHHHHHcCC-EEEecC-CCCHHHHHHHHHH
Confidence 667777777765555 44 445566667776545677778888888877654 666541 1144577888889
Q ss_pred HHHcCCcEEEEEccccCCCCCCCC-CC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHH
Q psy7343 294 LERAGCQLLAVHGRTVDQRGMNTG-LA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEA 349 (487)
Q Consensus 294 le~~G~d~I~VhgRt~~~~g~~~g-~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~ 349 (487)
+++.|+|++++..- .|.. +. .++.++.|.+.+++||+. | |--.+++.+.+
T Consensus 87 A~~~Gadavlv~~P------~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~ 146 (293)
T 1w3i_A 87 SKDFDIVGIASYAP------YYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKE 146 (293)
T ss_dssp GGGSCCSEEEEECC------CSCSSCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH
T ss_pred HHhcCCCEEEEcCC------CCCCCCCHHHHHHHHHHHHhhCCCCEEEEECchhhCcCCCHHHHHh
Confidence 99999999999432 1322 22 246778888888999864 4 43356776665
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.26 Score=48.25 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhh--hccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---
Q psy7343 256 WPLLTNLVSSLRQ--AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--- 330 (487)
Q Consensus 256 ~~~i~eiv~~v~~--~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--- 330 (487)
.+.+..+++.+.+ ..++||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+.
T Consensus 63 ~~~~~~~v~~~A~~~~~~VPValHl----DHg~~~e~i~~ai~~GFtSVMiDgS~------~p~eeNi~~Tk~vv~~ah~ 132 (288)
T 3q94_A 63 FKTVVAMVKALIEEMNITVPVAIHL----DHGSSFEKCKEAIDAGFTSVMIDASH------HPFEENVETTKKVVEYAHA 132 (288)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEE----EEECSHHHHHHHHHHTCSEEEECCTT------SCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEC----CCCCCHHHHHHHHHcCCCeEEEeCCC------CCHHHHHHHHHHHHHHHHH
Confidence 4556677776766 6789999998 54445666777778999999994321 1111133444444332
Q ss_pred CCCcEEE----cCC-----------CCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 331 LTIPVIA----NGN-----------IQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 331 ~~iPVi~----nGg-----------I~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.++.|-+ .|| .++++++.++.+++|+|...++=|-..
T Consensus 133 ~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~H 184 (288)
T 3q94_A 133 RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVH 184 (288)
T ss_dssp TTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBS
T ss_pred cCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCccc
Confidence 3565543 122 488999999999999998887655443
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.55 Score=45.50 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=85.0
Q ss_pred CCCchHHHHHHHHhCCccceeccccchhhhcChh----HHHHHH------hcCCCCCCeeeeec-c--CCHHHHHHHHHh
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK----LRQEIL------MSTPEDRPLIIQFC-G--NDSKNLTEAAKL 224 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~----~~~~~l------~~~~~~~Pv~Vqi~-g--~d~~~~~~aa~~ 224 (487)
.+-|.....+..+.|.+.+-+.--.+...+-.++ -..+++ .......||++-+- | .++++..+.+.+
T Consensus 35 tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY~s~~~a~~~a~r 114 (275)
T 3vav_A 35 TCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVK 114 (275)
T ss_dssp ECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSCSSHHHHHHHHHH
T ss_pred eCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 3456677778888888765443111111111110 112222 22333467888864 3 477777766654
Q ss_pred hCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc--------------c---ccc
Q psy7343 225 AEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ--------------D---VNK 286 (487)
Q Consensus 225 ~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~--------------d---~~~ 286 (487)
+.+. +++|.|--| ....+.++++++. +|||...+.+.+ + .++
T Consensus 115 l~kaGa~aVklEdg-------------------~~~~~~i~~l~~~-GIpv~gHlgltPq~~~~~gg~~vqgrt~~~a~~ 174 (275)
T 3vav_A 115 LMRAGAQMVKFEGG-------------------EWLAETVRFLVER-AVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQ 174 (275)
T ss_dssp HHHTTCSEEEEECC-------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHC---CCCCSHHHHHH
T ss_pred HHHcCCCEEEECCc-------------------hhHHHHHHHHHHC-CCCEEEecCCCceEEeccCCeEEEcCCHHHHHH
Confidence 4444 444444322 1123444455543 889887654311 1 135
Q ss_pred HHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 287 ~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
..+-++.++++||+.|.+-+ .+. +.+++|.+.+++|+|+-|
T Consensus 175 ~i~rA~a~~eAGA~~ivlE~-----------vp~-~~a~~It~~l~iP~igIG 215 (275)
T 3vav_A 175 LLRDARAVEEAGAQLIVLEA-----------VPT-LVAAEVTRELSIPTIGIG 215 (275)
T ss_dssp HHHHHHHHHHHTCSEEEEES-----------CCH-HHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHcCCCEEEecC-----------CCH-HHHHHHHHhCCCCEEEEc
Confidence 66778889999999998832 122 478899999999999765
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.38 Score=48.01 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhhccCcEEEEeec---c-cccc----------cHHHHHHHH--HHcCCcEEEEEccccCCC---CCCCC
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRI---Y-QDVN----------KTVEYARML--ERAGCQLLAVHGRTVDQR---GMNTG 317 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~---~-~d~~----------~~~e~a~~l--e~~G~d~I~VhgRt~~~~---g~~~g 317 (487)
+.+.++.++.+ ..++|+.+-+=. + .+.. .....++.+ .+.|+|.+-+ .-+.... +.-.+
T Consensus 147 ~~l~rv~~ec~-~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kv-e~p~~~~~v~g~~~~ 224 (332)
T 3iv3_A 147 AYIERIGSECQ-AEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKV-EVPVNMVYVEGFAEG 224 (332)
T ss_dssp HHHHHHHHHHH-HHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEE-CCSSCGGGBTTTCSS
T ss_pred HHHHHHHHHHH-HcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHHHHhhcCcCCcEEEE-ecCCChhhhcccccc
Confidence 34455554443 348999884422 1 1211 155667777 5679999988 2221110 00011
Q ss_pred CC------CHHHHHHHHhhCCCcEE-EcCCCCCHHHHHHHHH---hcCC--cEEEeccccccC
Q psy7343 318 LA------SWEHITAVRKALTIPVI-ANGNIQCLADVEACLA---QTGV--AGVMTAEGNLYN 368 (487)
Q Consensus 318 ~~------~~~~i~~i~~~~~iPVi-~nGgI~s~~da~~~l~---~~Ga--d~VmiGRa~l~~ 368 (487)
.. ..+.++++.+...+|++ .+||+ +.+++.+.++ +.|| .||.+||....+
T Consensus 225 ~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~-~~~~fl~~v~~A~~aGa~f~Gv~~GRnvwq~ 286 (332)
T 3iv3_A 225 EVVYSKEEAAQAFREQEASTDLPYIYLSAGV-SAELFQETLVFAHKAGAKFNGVLCGRATWAG 286 (332)
T ss_dssp CCCBCHHHHHHHHHHHHHTCSSCEEEECTTC-CHHHHHHHHHHHHHHTCCCCEEEECHHHHTT
T ss_pred cccccHHHHHHHHHHHHhcCCCCEEEECCCC-CHHHHHHHHHHHHHcCCCcceEEeeHHHHHh
Confidence 11 12457777788899966 68998 5667766653 3699 999999987666
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.5 Score=45.94 Aligned_cols=116 Identities=21% Similarity=0.216 Sum_probs=73.5
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCc-EEEEEccccCCCCCC-CCCCCHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ-LLAVHGRTVDQRGMN-TGLASWEHITA 326 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d-~I~VhgRt~~~~g~~-~g~~~~~~i~~ 326 (487)
|+....+.+++.++- .++.||++|--...+..+....++.+...|.. .+.+| |.....+.| ....++..+..
T Consensus 128 gs~~~~n~~ll~~~a-----~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~-Rg~~~yp~y~~~~vdl~~i~~ 201 (276)
T 1vs1_A 128 GARNMQNFPLLREVG-----RSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVE-RGIRTFEPSTRFTLDVAAVAV 201 (276)
T ss_dssp CGGGTTCHHHHHHHH-----HHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEE-CCBCCSCCSSSSBCBHHHHHH
T ss_pred CcccccCHHHHHHHH-----ccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEe-CCcCCCCCcCcchhCHHHHHH
Confidence 445566788777654 35899999975544556788888888899985 44555 322222112 23457888999
Q ss_pred HHhhCCCcEEEc----CCCCC--HHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 327 VRKALTIPVIAN----GNIQC--LADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 327 i~~~~~iPVi~n----GgI~s--~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+++..++||++. +|.++ ..-....+ ..||+|+||=+-+--+-.+
T Consensus 202 lk~~~~lpVi~dssH~~g~~~~~~~~~~aAv-a~Ga~Gl~IE~H~~~d~a~ 251 (276)
T 1vs1_A 202 LKEATHLPVIVDPSHPAGRRSLVPALAKAGL-AAGADGLIVEVHPNPEEAL 251 (276)
T ss_dssp HHHHBSSCEEECCHHHHCSGGGHHHHHHHHH-HTTCSEEEEEBCSSGGGCS
T ss_pred HHHHhCCCEEEeCCCCCCccchHHHHHHHHH-HcCCCEEEEEecCCcccCC
Confidence 999889999763 23222 22233334 5799999998865433333
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.58 Score=46.54 Aligned_cols=124 Identities=10% Similarity=0.075 Sum_probs=80.2
Q ss_pred CCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHH
Q psy7343 213 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 213 ~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e 289 (487)
.+++++.+.++ .+++.+..+.+..|. .+++.-.+.++++++.++ +.+.+-.--+++..+..+
T Consensus 115 ~~~e~~~~~a~~~~~~G~~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~ 179 (332)
T 2ozt_A 115 GSGQAALEQWQQSWQRGQTTFKWKVGV---------------MSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANR 179 (332)
T ss_dssp CTGGGHHHHHHHHHHTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCcEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHH
Confidence 35565555444 444445555544331 134444566777887763 444443322456667788
Q ss_pred HHHHHHHc---CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 290 YARMLERA---GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 290 ~a~~le~~---G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+++.++++ ++..|- | + . ...+++..+++++.+++||.+.=.+.+..++.++++...+|.+.+
T Consensus 180 ~~~~l~~~~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~i 244 (332)
T 2ozt_A 180 WFAWLDRHGNGKIEYVE-------Q-P-L-PPDQWQALLSLAQTVTTAIALDESVVSAAEVQRWVDRGWPGFFVI 244 (332)
T ss_dssp HHHHHHHHCCTTEEEEE-------C-C-S-CTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHhhccCCcceeE-------C-C-C-CCCCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEE
Confidence 88999988 555442 1 1 1 234789999999999999999889999999999996555676654
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.61 Score=46.26 Aligned_cols=139 Identities=14% Similarity=0.220 Sum_probs=87.1
Q ss_pred CCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-e
Q psy7343 202 EDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-R 279 (487)
Q Consensus 202 ~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R 279 (487)
.+.||.+.+. |.+.+...++.+ ..|.-|- ..+. --.+..|-+...++++.... .++.|-+-+ +
T Consensus 74 ~~VPValHlDHg~~~e~i~~ai~---~GFtSVM----------iDgS-~~p~eENi~~Tk~vv~~ah~-~gvsVEaELG~ 138 (323)
T 2isw_A 74 PDIPICIHLDHGDTLESVKMAID---LGFSSVM----------IDAS-HHPFDENVRITKEVVAYAHA-RSVSVEAELGT 138 (323)
T ss_dssp TTSCEEEEEEEECSHHHHHHHHH---TTCSEEE----------ECCT-TSCHHHHHHHHHHHHHHHHT-TTCEEEEEESC
T ss_pred CCCcEEEECCCCCCHHHHHHHHH---cCCCeEE----------ecCC-CCCHHHHHHHHHHHHHHHHH-cCCeEEEEeCC
Confidence 3579999998 666555443332 2233222 2211 11224456667777765543 366665532 2
Q ss_pred ccc--c-------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCC--CC----CCHHHHHHHHhhCCCcEEEcCCCCCH
Q psy7343 280 IYQ--D-------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT--GL----ASWEHITAVRKALTIPVIANGNIQCL 344 (487)
Q Consensus 280 ~~~--d-------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~--g~----~~~~~i~~i~~~~~iPVi~nGgI~s~ 344 (487)
+++ | ..+.++..+..+++|+|.+.+.=.|.-+. |. |. -+++.+++|++.+++|++.-|+=.-+
T Consensus 139 vgg~Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~HG~--Yk~~~~p~~~L~~~~L~~I~~~~~vpLVlHGgSsvp 216 (323)
T 2isw_A 139 LGGIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSHGA--YKFKSESDIRLAIDRVKTISDLTGIPLVMHGSSSVP 216 (323)
T ss_dssp C----------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSS--BCCCC----CCCCHHHHHHHHHHCSCEEECSCCCCC
T ss_pred ccCCccCcccccccCCHHHHHHHHHHHCCCEEEEecCccccc--cCCCCCcccccCHHHHHHHHHHhCCCeEEECCCCCC
Confidence 222 1 14678888899999999998832332222 44 43 45799999999999999999988888
Q ss_pred HHHHHHHHhcCCc
Q psy7343 345 ADVEACLAQTGVA 357 (487)
Q Consensus 345 ~da~~~l~~~Gad 357 (487)
++..+.+.++|-+
T Consensus 217 ~~~~~~~~~~gg~ 229 (323)
T 2isw_A 217 KDVKDMINKYGGK 229 (323)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccc
Confidence 8888888777643
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.21 Score=49.10 Aligned_cols=109 Identities=12% Similarity=0.171 Sum_probs=67.0
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEccccCCC-CCCCCCC--CH-HHHHHHH
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRTVDQR-GMNTGLA--SW-EHITAVR 328 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~~--~~-~~i~~i~ 328 (487)
-..+.+...++.|.+.+++||++-+..|. +..+..+.++.++++|+++|.|-+.....+ |...|.. .. +.+.+|+
T Consensus 66 vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~ 145 (298)
T 3eoo_A 66 STMDDVLVDANRITNATNLPLLVDIDTGWGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIK 145 (298)
T ss_dssp CCHHHHHHHHHHHHHHCCSCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHH
Confidence 35677777788888888999999887663 444667778889999999999976543222 2222221 22 4455554
Q ss_pred h---hC-CCcEEEcCCCCCH--HHHHHHH------HhcCCcEEEec
Q psy7343 329 K---AL-TIPVIANGNIQCL--ADVEACL------AQTGVAGVMTA 362 (487)
Q Consensus 329 ~---~~-~iPVi~nGgI~s~--~da~~~l------~~~Gad~VmiG 362 (487)
. .- +.+++.++...+. +.+.+.+ .+.|||+|.+=
T Consensus 146 Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~ 191 (298)
T 3eoo_A 146 AAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPE 191 (298)
T ss_dssp HHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEeC
Confidence 3 22 3444444444433 2222222 25799999873
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.17 Score=49.47 Aligned_cols=95 Identities=20% Similarity=0.155 Sum_probs=63.8
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc---CCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV---DQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~---~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
+.-|+++.+ ...++++.+++.|+++|.+-.... ...++.....+.+.++++++.+++|++.+.++.+.++
T Consensus 20 ~~~~~i~~~-------~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~~~ 92 (297)
T 2zbt_A 20 FKGGVIMDV-------TTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVE 92 (297)
T ss_dssp GTTEEEEEE-------SSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHH
T ss_pred hhCCeeeee-------chHHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccCCHHH
Confidence 455777766 347899999999999997711000 0001111234578899999999999999888888888
Q ss_pred HHHHHHhcCCcEEEeccccccCccccc
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
++.++ +.|||+| .+......|.+.+
T Consensus 93 ~~~~~-~aGad~v-~~~~~~~~~~~~~ 117 (297)
T 2zbt_A 93 AMILE-AIGVDFI-DESEVLTPADEEH 117 (297)
T ss_dssp HHHHH-HTTCSEE-EEETTSCCSCSSC
T ss_pred HHHHH-HCCCCEE-eeeCCCChHHHHH
Confidence 88777 7999999 4433222344433
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.11 Score=54.72 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+..+.++.+.++|+|.|.++.... + ....++.++++++.. ++||++ |++.|.++++.+. +.|||+|.+|
T Consensus 228 ~~~~~~a~~l~~aG~d~I~id~a~g-----~-~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~-~aGaD~I~vg 298 (490)
T 4avf_A 228 ADTGERVAALVAAGVDVVVVDTAHG-----H-SKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALA-EAGADAVKVG 298 (490)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCC-----S-BHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHH-HTTCSEEEEC
T ss_pred cchHHHHHHHhhcccceEEecccCC-----c-chhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHH-HcCCCEEEEC
Confidence 4667788888899999999953321 1 122358899999988 889888 8899999999988 7999999986
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.38 Score=49.97 Aligned_cols=121 Identities=14% Similarity=0.200 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHhh-CC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHH
Q psy7343 213 NDSKNLTEAAKLA-EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 213 ~d~~~~~~aa~~~-~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e 289 (487)
.+++++++.++.+ ++ .+..+-+..|. .+++.-.+.++++|+++ ++.+.+-.--+|+..+..+
T Consensus 187 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~---------------~~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai~ 251 (441)
T 3vc5_A 187 LDPDGIVAQARLLIGEYGFRSIKLKGGV---------------FPPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIR 251 (441)
T ss_dssp CSHHHHHHHHHHHHHHHCCSSEEEECSS---------------SCHHHHHHHHHHHHHHSTTCCEEEECTTCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEccCC---------------CCHHHHHHHHHHHHHhCCCCcEeccCCCCCCHHHHHH
Confidence 5788887766654 44 45555554332 13343345566777766 4455554433566667778
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+++.+++. +..|- | + . .+++..+++++.+++||.+.-.+.+..++.++++...+|.+++
T Consensus 252 ~~~~L~~~-l~~iE-------e-P-~---~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~dii~~ 310 (441)
T 3vc5_A 252 VGRALDGV-LEYLE-------D-P-T---PGIDGMARVAAEVPMPLATNMCVVTPEHLPAAVERRPIGVLLI 310 (441)
T ss_dssp HHHHTTTT-CSEEE-------C-C-S---SSHHHHHHHHTTSSSCEEESSSCCSGGGHHHHHHHCCCSEEEE
T ss_pred HHHHHHHH-HHHhh-------c-c-C---CCHHHHHHHHhcCCCCEEeCCCCCCHHHHHHHHHhCCCCEEee
Confidence 88888776 65542 2 1 1 3788999999999999999888999999999997777888765
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=1 Score=44.24 Aligned_cols=139 Identities=14% Similarity=0.232 Sum_probs=88.5
Q ss_pred CCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-e
Q psy7343 202 EDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-R 279 (487)
Q Consensus 202 ~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R 279 (487)
.+.||.+.+. |.+.+...++. +..|.-|= ..+. --.+..|-+...++++.... .++.|-+-+ +
T Consensus 71 ~~VPValHlDHg~~~e~~~~ai---~~GFtSVM----------iDgS-~~p~eENi~~Tk~vv~~ah~-~gvsVEaELG~ 135 (305)
T 1rvg_A 71 ARVPVAVHLDHGSSYESVLRAL---RAGFTSVM----------IDKS-HEDFETNVRETRRVVEAAHA-VGVTVEAELGR 135 (305)
T ss_dssp CSSCEEEEEEEECSHHHHHHHH---HTTCSEEE----------ECCT-TSCHHHHHHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred CCCcEEEECCCCCCHHHHHHHH---HcCCCeee----------eCCC-CCCHHHHHHHHHHHHHHHHH-cCCEEEEEEee
Confidence 4689999998 66655444433 22233222 2211 11224456667777765543 366665543 2
Q ss_pred ccc--c----------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCC--C--CCCHHHHHHHHhhCCCcEEEcCCCCC
Q psy7343 280 IYQ--D----------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT--G--LASWEHITAVRKALTIPVIANGNIQC 343 (487)
Q Consensus 280 ~~~--d----------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~--g--~~~~~~i~~i~~~~~iPVi~nGgI~s 343 (487)
+++ | ..+..+..+..+++|+|.+.+.=.|.-.. |. | .-+++.+++|++.+++|++.-|+=.=
T Consensus 136 vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~--Yk~~g~p~L~~~~L~~I~~~~~vpLVlHGgSsv 213 (305)
T 1rvg_A 136 LAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGA--YKGKGRPFIDHARLERIARLVPAPLVLHGASAV 213 (305)
T ss_dssp CCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSS--BCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCC
T ss_pred ccCccCCccccccccccCCHHHHHHHHHHHCCCEEEEecCccccc--cCCCCCCccCHHHHHHHHHhcCCCEEEeCCCCC
Confidence 222 1 14678888889999999998832332222 44 3 34789999999999999999998877
Q ss_pred HHHHHHHHHhcCCc
Q psy7343 344 LADVEACLAQTGVA 357 (487)
Q Consensus 344 ~~da~~~l~~~Gad 357 (487)
+++..+++.+.|-+
T Consensus 214 ~~~~~~~~~~~gg~ 227 (305)
T 1rvg_A 214 PPELVERFRASGGE 227 (305)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred cHHHHHHHHhhccc
Confidence 88888888777754
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.18 Score=53.33 Aligned_cols=70 Identities=21% Similarity=0.334 Sum_probs=55.2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+..+.++.+.++|+|.|.|+.... . ....++.++++++.. ++||++ |++.+.++++.+. +.|||+|.+|
T Consensus 230 ~d~~~~a~~l~~aG~d~I~id~a~g-----~-~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~-~aGaD~I~Vg 300 (496)
T 4fxs_A 230 PGNEERVKALVEAGVDVLLIDSSHG-----H-SEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALI-EAGVSAVKVG 300 (496)
T ss_dssp SCCHHHHHHHHHTTCSEEEEECSCT-----T-SHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHH-HHTCSEEEEC
T ss_pred cchHHHHHHHHhccCceEEeccccc-----c-chHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHH-HhCCCEEEEC
Confidence 3557778888889999999954321 1 112358899999988 899988 8899999999988 7899999986
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=1.4 Score=42.79 Aligned_cols=139 Identities=12% Similarity=0.174 Sum_probs=91.5
Q ss_pred CCC-eeeeeccCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEee
Q psy7343 203 DRP-LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIR 279 (487)
Q Consensus 203 ~~P-v~Vqi~g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR 279 (487)
+.| +.|.+.+.+.++..+.++.+.. .+|.||+-... .. . ..+.+.+.+.+..+++.+ ++|+++.+|
T Consensus 38 g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~-l~----~------~~~~~~v~~~l~~lr~~~~~~PiI~T~R 106 (276)
T 3o1n_A 38 GAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDH-FA----N------VTTAESVLEAAGAIREIITDKPLLFTFR 106 (276)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGG-CT----T------TTCHHHHHHHHHHHHHHCCSSCEEEECC
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEecc-cc----c------cCcHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 344 4567888898888887777764 48999987655 11 0 123477888888898887 899999999
Q ss_pred ccc-------ccccHHHHHHHHHHcC-CcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCCCcEEEc----CCCCCH
Q psy7343 280 IYQ-------DVNKTVEYARMLERAG-CQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALTIPVIAN----GNIQCL 344 (487)
Q Consensus 280 ~~~-------d~~~~~e~a~~le~~G-~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~n----GgI~s~ 344 (487)
..+ +.+...++.+.+.+.| +|+|.|--.. .-+.++++.+ .-+..||++ .+--+.
T Consensus 107 t~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~-----------~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~ 175 (276)
T 3o1n_A 107 SAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFT-----------GDDEVKATVGYAHQHNVAVIMSNHDFHKTPAA 175 (276)
T ss_dssp BGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGG-----------CHHHHHHHHHHHHHTTCEEEEEEEESSCCCCH
T ss_pred EhhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcC-----------CHHHHHHHHHHHHhCCCEEEEEeecCCCCcCH
Confidence 722 2335666777777889 9999993211 1244555543 457888875 333445
Q ss_pred HHHHHHHH---hcCCcEEEecc
Q psy7343 345 ADVEACLA---QTGVAGVMTAE 363 (487)
Q Consensus 345 ~da~~~l~---~~Gad~VmiGR 363 (487)
+++.+.++ ..|||.|=++.
T Consensus 176 ~el~~~~~~~~~~GaDIvKia~ 197 (276)
T 3o1n_A 176 EEIVQRLRKMQELGADIPKIAV 197 (276)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEe
Confidence 56655543 46999776654
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.59 Score=43.29 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=85.5
Q ss_pred CCeeeeeccC----CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe
Q psy7343 204 RPLIIQFCGN----DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278 (487)
Q Consensus 204 ~Pv~Vqi~g~----d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi 278 (487)
.-|++|..+. +.+...++++.++++ +++|.++ .++ .++.+++.+++|+....
T Consensus 7 ~~~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~-------------------~~~----~i~~i~~~~~~pv~~~~ 63 (223)
T 1y0e_A 7 LIVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRAN-------------------TKE----DILAIKETVDLPVIGIV 63 (223)
T ss_dssp EEEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEE-------------------SHH----HHHHHHHHCCSCEEEEC
T ss_pred eEEEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccC-------------------CHH----HHHHHHHhcCCCEEeee
Confidence 3478898865 677888888888776 4444331 233 35557777899995432
Q ss_pred eccc-----ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHH
Q psy7343 279 RIYQ-----DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 279 R~~~-----d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~ 352 (487)
+... -+....+.++.+.++|+|.|.+|...... ......+.++++++.+ +.+++. ++.|.+++.++.
T Consensus 64 ~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~~----p~~~~~~~i~~~~~~~~~~~v~~--~~~t~~e~~~~~- 136 (223)
T 1y0e_A 64 KRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQR----PKETLDELVSYIRTHAPNVEIMA--DIATVEEAKNAA- 136 (223)
T ss_dssp BCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCC----SSSCHHHHHHHHHHHCTTSEEEE--ECSSHHHHHHHH-
T ss_pred ccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecccC----cccCHHHHHHHHHHhCCCceEEe--cCCCHHHHHHHH-
Confidence 2210 11234556677788999999997542111 0012357788888876 666665 678999988876
Q ss_pred hcCCcEEEeccc
Q psy7343 353 QTGVAGVMTAEG 364 (487)
Q Consensus 353 ~~Gad~VmiGRa 364 (487)
+.|+|.++++-.
T Consensus 137 ~~G~d~i~~~~~ 148 (223)
T 1y0e_A 137 RLGFDYIGTTLH 148 (223)
T ss_dssp HTTCSEEECTTT
T ss_pred HcCCCEEEeCCC
Confidence 789999987643
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.54 E-value=1.4 Score=42.96 Aligned_cols=138 Identities=20% Similarity=0.313 Sum_probs=90.7
Q ss_pred CCCeeeeec--c----CCHHHHHHHHH---hhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccC
Q psy7343 203 DRPLIIQFC--G----NDSKNLTEAAK---LAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV 272 (487)
Q Consensus 203 ~~Pv~Vqi~--g----~d~~~~~~aa~---~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i 272 (487)
+.||-+=|+ + .+.+++..+.+ .+.+. +|+|-+ || .+..+ .-|.+...++++... +.
T Consensus 89 ~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvVf--G~---L~~dg------~iD~~~~~~Li~~a~---~l 154 (287)
T 3iwp_A 89 QIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVF--GA---LTEDG------HIDKELCMSLMAICR---PL 154 (287)
T ss_dssp CSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEE--CC---BCTTS------CBCHHHHHHHHHHHT---TS
T ss_pred CCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE--ee---eCCCC------CcCHHHHHHHHHHcC---CC
Confidence 578877776 2 35555554433 33344 666654 44 11111 147888888887643 57
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~ 350 (487)
+++.. |..+...+..+..+.+.+.|++.|.-+|-.. +.....+.++++.+.. +|+|++.|||+ .+.+.++
T Consensus 155 ~vTFH-RAFD~~~d~~~Ale~Li~lGvdrILTSG~~~------~a~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~-~~Ni~~l 226 (287)
T 3iwp_A 155 PVTFH-RAFDMVHDPMAALETLLTLGFERVLTSGCDS------SALEGLPLIKRLIEQAKGRIVVMPGGGIT-DRNLQRI 226 (287)
T ss_dssp CEEEC-GGGGGCSCHHHHHHHHHHHTCSEEEECTTSS------STTTTHHHHHHHHHHHTTSSEEEECTTCC-TTTHHHH
T ss_pred cEEEE-CchhccCCHHHHHHHHHHcCCCEEECCCCCC------ChHHhHHHHHHHHHHhCCCCEEEECCCcC-HHHHHHH
Confidence 88876 4433445688888999999999999866411 1123467777776654 59999999986 5778888
Q ss_pred HHhcCCcEEEec
Q psy7343 351 LAQTGVAGVMTA 362 (487)
Q Consensus 351 l~~~Gad~VmiG 362 (487)
++.+|++.+-..
T Consensus 227 ~~~tG~~~~H~S 238 (287)
T 3iwp_A 227 LEGSGATEFHCS 238 (287)
T ss_dssp HHHHCCSEEEEC
T ss_pred HHhhCCCEEeEC
Confidence 877999888764
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.36 Score=48.50 Aligned_cols=117 Identities=16% Similarity=0.236 Sum_probs=75.9
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC-CCCCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN-TGLASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~-~g~~~~~~i~~i 327 (487)
|+....+.+++.++- .++.||.+|--...+.++...+++.+...|..-+++--|.....+.| ....++..+..+
T Consensus 196 gAr~~~n~~LL~~va-----~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~l 270 (350)
T 1vr6_A 196 GARNAQNFRLLSKAG-----SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPII 270 (350)
T ss_dssp CGGGTTCHHHHHHHH-----TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHH
T ss_pred CcccccCHHHHHHHH-----ccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHH
Confidence 445566788777643 36899999975544566888888888899986666622433222223 344578888899
Q ss_pred HhhCCCcEEEc----CCCCC--HHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 328 RKALTIPVIAN----GNIQC--LADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 328 ~~~~~iPVi~n----GgI~s--~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++..++||++. +|-+. ..-....+ ..||||+||=+-+--+-.+
T Consensus 271 k~~~~lpVi~dssHs~G~~~~v~~~a~AAv-A~GA~Gl~IE~H~~pd~al 319 (350)
T 1vr6_A 271 RKESHLPILVDPSHSGGRRDLVIPLSRAAI-AVGAHGIIVEVHPEPEKAL 319 (350)
T ss_dssp HHHBSSCEEECHHHHHCSGGGHHHHHHHHH-HHTCSEEEEEBCSCGGGCS
T ss_pred HHhhCCCEEEeCCCCCcccchHHHHHHHHH-HhCCCEEEEEecCCcccCC
Confidence 99889999772 23222 22233334 5799999998765444333
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.4 Score=46.83 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~ 332 (487)
.+.+..+++.+.+..++||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+. .+
T Consensus 59 ~~~~~~~v~~~a~~~~VPValHl----DHg~~~e~i~~ai~~GFtSVMiDgS~------lp~eeNi~~Tk~vv~~ah~~g 128 (286)
T 1gvf_A 59 LEEIYALCSAYSTTYNMPLALHL----DHHESLDDIRRKVHAGVRSAMIDGSH------FPFAENVKLVKSVVDFCHSQD 128 (286)
T ss_dssp HHHHHHHHHHHHHHTTSCBEEEE----EEECCHHHHHHHHHTTCCEEEECCTT------SCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcEEEEc----CCCCCHHHHHHHHHcCCCeEEECCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 56677777777777899999998 44444666777778999999994321 1111133444444332 24
Q ss_pred CcEEE--------c---------CCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 333 IPVIA--------N---------GNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 333 iPVi~--------n---------GgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.|-+ . .-.++++++.++.+++|+|...++=|-..
T Consensus 129 vsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~H 180 (286)
T 1gvf_A 129 CSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAH 180 (286)
T ss_dssp CEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCS
T ss_pred CEEEEEEeeccCcccCcccccccccCCCHHHHHHHHHHHCCCEEEeecCccc
Confidence 44321 1 12388999999999999998887755443
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.52 Score=47.71 Aligned_cols=131 Identities=11% Similarity=0.108 Sum_probs=82.6
Q ss_pred CCCeeeeeccCCHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc---cCcEEEEe
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV---QVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~---~iPV~vKi 278 (487)
..|+...+...++++..+.++. .++.|..+-+..|. .+.+.-.+.++++++++ ++.+.+-.
T Consensus 139 ~v~~y~s~~~~~~~~~~~~a~~~~~~G~~~~KiKvg~---------------~~~~~di~~v~~vr~a~~g~~~~l~vDa 203 (376)
T 4h2h_A 139 SVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGA---------------RPIEIDIEAIRKVWEAVRGTGIALAADG 203 (376)
T ss_dssp EEECEEEECSCCHHHHHHHHHHHHHHTCSEEEEECCS---------------SCHHHHHHHHHHHHHHHTTSCCEEEEEC
T ss_pred ceeEeeecccCCHHHHHHHHHHHHhcCceEEEEecCC---------------CCHHHHHHHHHHHHhhccCCeeEEEEee
Confidence 3456666666778777665544 44446666555443 12222234455566544 34454433
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
.-+|+..+..++++.+++.+. .+ +| + . .+++.++++++..++||.+.-.+.+..|+.++++...+|.
T Consensus 204 N~~~~~~~A~~~~~~l~~~~~---~i-----Ee-P-~---~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~ 270 (376)
T 4h2h_A 204 NRGWTTRDALRFSRECPDIPF---VM-----EQ-P-C---NSFEDLEAIRPLCHHALYMDEDGTSLNTVITAAATSLVDG 270 (376)
T ss_dssp TTCCCHHHHHHHHHHCTTSCE---EE-----ES-C-S---SSHHHHHHHGGGCCSCEEESTTCCSHHHHHHHHHTTCCSE
T ss_pred ccCCCHHHHHHHHHHHhhccc---cc-----cC-C-c---chhhhHhhhhhcccCccccCcccCCHHHHHHHHHhhccCc
Confidence 334566677777777766542 33 22 1 1 3578889999999999999889999999999996666787
Q ss_pred EEe
Q psy7343 359 VMT 361 (487)
Q Consensus 359 Vmi 361 (487)
+++
T Consensus 271 v~~ 273 (376)
T 4h2h_A 271 FGM 273 (376)
T ss_dssp ECC
T ss_pred ccc
Confidence 754
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=93.52 E-value=0.76 Score=44.55 Aligned_cols=127 Identities=17% Similarity=0.127 Sum_probs=74.0
Q ss_pred HHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecc--cccccHHHHHHHHHH
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIY--QDVNKTVEYARMLER 296 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~--~d~~~~~e~a~~le~ 296 (487)
.|++++++ +|.| +-... ...+..|. -..+.-..+.+...+++|++.++ .||++-+..+ .+.++..+-+..+.+
T Consensus 41 sA~l~e~aG~d~i-lvGdS-l~~~~lG~-~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY~s~~~a~~~a~rl~k 117 (275)
T 3vav_A 41 FAALLDRANVDVQ-LIGDS-LGNVLQGQ-TTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMR 117 (275)
T ss_dssp HHHHHHHTTCSEE-EECTT-HHHHTTCC-SSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEE-EECcH-HHHHHcCC-CCCCccCHHHHHHHHHHHHhcCCCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 45566666 6766 32212 22233332 22223346666666777877774 8899988764 233455555667777
Q ss_pred cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc-----------CCC----CCHHHHHHHH------HhcC
Q psy7343 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN-----------GNI----QCLADVEACL------AQTG 355 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n-----------GgI----~s~~da~~~l------~~~G 355 (487)
+|+++|.+-+. ....+.++.+.+ .+|||++. ||. +|.+.+.+++ ++.|
T Consensus 118 aGa~aVklEdg----------~~~~~~i~~l~~-~GIpv~gHlgltPq~~~~~gg~~vqgrt~~~a~~~i~rA~a~~eAG 186 (275)
T 3vav_A 118 AGAQMVKFEGG----------EWLAETVRFLVE-RAVPVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAG 186 (275)
T ss_dssp TTCSEEEEECC----------GGGHHHHHHHHH-TTCCEEEEEESCGGGHHHHC---CCCCSHHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEECCc----------hhHHHHHHHHHH-CCCCEEEecCCCceEEeccCCeEEEcCCHHHHHHHHHHHHHHHHcC
Confidence 89999999432 123466777765 48899863 332 3444444443 3578
Q ss_pred CcEEEe
Q psy7343 356 VAGVMT 361 (487)
Q Consensus 356 ad~Vmi 361 (487)
||++.+
T Consensus 187 A~~ivl 192 (275)
T 3vav_A 187 AQLIVL 192 (275)
T ss_dssp CSEEEE
T ss_pred CCEEEe
Confidence 888764
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.7 Score=45.53 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhhh-ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---C
Q psy7343 256 WPLLTNLVSSLRQA-VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---L 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~-~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~ 331 (487)
.+.+..+++.+.+. .++||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+. .
T Consensus 58 ~~~~~~~v~~aa~~~~~VPValHL----DHg~~~e~~~~ai~~GFtSVMiDgS~------~p~eeNi~~Tk~vv~~ah~~ 127 (307)
T 3n9r_A 58 IDMAVGMVKIMCERYPHIPVALHL----DHGTTFESCEKAVKAGFTSVMIDASH------HAFEENLELTSKVVKMAHNA 127 (307)
T ss_dssp HHHHHHHHHHHHHHSTTSCEEEEE----EEECSHHHHHHHHHHTCSEEEECCTT------SCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEC----CCCCCHHHHHHHHHhCCCcEEEECCC------CCHHHHHHHHHHHHHHHHHc
Confidence 45566667666655 689999998 44344566667778999999994321 1111133444444332 3
Q ss_pred CCcEEE----cCC-------------CCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 332 TIPVIA----NGN-------------IQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 332 ~iPVi~----nGg-------------I~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
++.|-+ .|| .++++++.++.+++|+|...++=|-..
T Consensus 128 gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~H 180 (307)
T 3n9r_A 128 GVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSH 180 (307)
T ss_dssp TCEEEEEESCCCCC----------CCSCCHHHHHHHHHHHCCSEEEECSSCCS
T ss_pred CCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHHHCCCEEEEecCCcc
Confidence 555543 122 378999999999999998887655443
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.53 Score=45.89 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=72.7
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-CCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~~~~~~i~~i 327 (487)
|+....+.+++.++ . .++.||.+|--..-+.++....++.+.+.|.+-|++.=|+.. . .|.. ..|+..+..+
T Consensus 117 gA~~~~n~~LLr~v----a-~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~-y-~~~~~~vdl~~i~~l 189 (285)
T 3sz8_A 117 PAFLARQTDLVVAI----A-KAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSS-F-GYDNLVVDMLGFRQM 189 (285)
T ss_dssp CGGGTTCHHHHHHH----H-HTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEE-C-SSSCEECCTTHHHHH
T ss_pred CccccCCHHHHHHH----H-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-C-CCCcCccCHHHHHHH
Confidence 44455677766653 2 368999999755446678889999999999987877445432 1 1322 2578889999
Q ss_pred HhhC-CCcEEEcCCCC-----------CH------HHHHHHHHhcCCcEEEecccc
Q psy7343 328 RKAL-TIPVIANGNIQ-----------CL------ADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 328 ~~~~-~iPVi~nGgI~-----------s~------~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.. +.||++..+-. .. .-+.... ..||||++|=+-+
T Consensus 190 k~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAv-A~GA~gl~IE~H~ 244 (285)
T 3sz8_A 190 AETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGI-AVGIAGLFLEAHP 244 (285)
T ss_dssp HHHTTSCCEEEETTTTCC---------------HHHHHHHHH-HHCCSEEEEEEES
T ss_pred HHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHH-HhCCCEEEEEecc
Confidence 9988 59999843332 12 2233444 5799999987643
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.67 Score=45.48 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=57.2
Q ss_pred hccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC---CCCHHHHHHHHhhCCCcEEEcCCCCCHH
Q psy7343 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG---LASWEHITAVRKALTIPVIANGNIQCLA 345 (487)
Q Consensus 269 ~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g---~~~~~~i~~i~~~~~iPVi~nGgI~s~~ 345 (487)
...-+++... +..+.++.+++.|+++|++..+.........| ..+.+.++++++.+++||+++-.+...+
T Consensus 19 ~~~~g~i~~~-------~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~~~ 91 (305)
T 2nv1_A 19 MQKGGVIMDV-------INAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIV 91 (305)
T ss_dssp TTTTCEEEEE-------SSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTCHH
T ss_pred HccCCeeecC-------CHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccchH
Confidence 3344566654 56789999999999999653210000000112 2367899999999999999643333366
Q ss_pred HHHHHHHhcCCcEEEeccccc
Q psy7343 346 DVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa~l 366 (487)
++..++ ..|||+|. +...+
T Consensus 92 ~~~~~~-a~GAd~V~-~~~~l 110 (305)
T 2nv1_A 92 EARVLE-AMGVDYID-ESEVL 110 (305)
T ss_dssp HHHHHH-HHTCSEEE-ECTTS
T ss_pred HHHHHH-HCCCCEEE-EeccC
Confidence 666666 69999996 55555
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.67 Score=43.49 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHH-HHHHHHHhcCCcEEEecccc
Q psy7343 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLA-DVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 287 ~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~-da~~~l~~~Gad~VmiGRa~ 365 (487)
...+++..++.|+|++.+.+. .-+.++.+++.++-.++..+||+-.. +..+.+ ..|+|.+.|||++
T Consensus 124 ~~~~a~~a~~~g~~GvV~sat------------~p~e~~~ir~~~~~~~~vtPGI~~~g~tp~~a~-~~Gad~iVVGR~I 190 (222)
T 4dbe_A 124 ADYIKNVIREISPKGIVVGGT------------KLDHITQYRRDFEKMTIVSPGMGSQGGSYGDAV-CAGADYEIIGRSI 190 (222)
T ss_dssp HHHHHHHHHHHCCSEEEECTT------------CHHHHHHHHHHCTTCEEEECCBSTTSBCTTHHH-HHTCSEEEECHHH
T ss_pred HHHHHHHHHHhCCCEEEECCC------------CHHHHHHHHHhCCCCEEEcCCcccCccCHHHHH-HcCCCEEEECHHh
Confidence 377889999999999988321 12456777777644677788887431 455666 5899999999999
Q ss_pred ccCcc
Q psy7343 366 LYNPA 370 (487)
Q Consensus 366 l~~P~ 370 (487)
..-++
T Consensus 191 ~~A~d 195 (222)
T 4dbe_A 191 YNAGN 195 (222)
T ss_dssp HTSSS
T ss_pred cCCCC
Confidence 87543
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=93.33 E-value=0.2 Score=45.99 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=60.7
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHHHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEAC 350 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~da~~~ 350 (487)
.|++.-+|.. +.++..++++.+.+.|++.|.+|-++. ...+.++++++.++ -.+++.|-+.+.+++..+
T Consensus 10 ~~~i~~~~~~-~~~~~~~~~~~~~~~G~~~iev~~~~~---------~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a 79 (205)
T 1wa3_A 10 HKIVAVLRAN-SVEEAKEKALAVFEGGVHLIEITFTVP---------DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKA 79 (205)
T ss_dssp HCEEEEECCS-SHHHHHHHHHHHHHTTCCEEEEETTST---------THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHH
T ss_pred CCEEEEEecC-CHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCcEEEecccCCHHHHHHH
Confidence 5677777644 566788999999999999999986632 11356778887652 224556778999999888
Q ss_pred HHhcCCcEEEecccc
Q psy7343 351 LAQTGVAGVMTAEGN 365 (487)
Q Consensus 351 l~~~Gad~VmiGRa~ 365 (487)
. +.|+|.+ ++-++
T Consensus 80 ~-~~Gad~i-v~~~~ 92 (205)
T 1wa3_A 80 V-ESGAEFI-VSPHL 92 (205)
T ss_dssp H-HHTCSEE-ECSSC
T ss_pred H-HcCCCEE-EcCCC
Confidence 8 6899999 76553
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.13 Score=54.60 Aligned_cols=71 Identities=18% Similarity=0.365 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+..+.++.+.++|+|.|.+|.-. | +. ...++.++++++.+ ++||++ |+|.+.++++++. +.|+|+|.+|.
T Consensus 254 ~~~~~~a~~~~~aG~d~v~i~~~~----G-~~-~~~~~~i~~i~~~~~~~pvi~-~~v~t~~~a~~l~-~aGad~I~vg~ 325 (514)
T 1jcn_A 254 EDDKYRLDLLTQAGVDVIVLDSSQ----G-NS-VYQIAMVHYIKQKYPHLQVIG-GNVVTAAQAKNLI-DAGVDGLRVGM 325 (514)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSC----C-CS-HHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHH-HHTCSEEEECS
T ss_pred hhhHHHHHHHHHcCCCEEEeeccC----C-cc-hhHHHHHHHHHHhCCCCceEe-cccchHHHHHHHH-HcCCCEEEECC
Confidence 346777788889999999996431 0 11 12368899999998 899987 7899999999988 78999999854
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.96 Score=44.85 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhhh-ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---C
Q psy7343 256 WPLLTNLVSSLRQA-VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---L 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~-~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~ 331 (487)
.+.+..+++...+. .++||.+.. |-....+.++...+.|.+.||+.|-. +.-.-|.+..+++.+. .
T Consensus 59 ~~~~~~~v~~aa~~~~~VPValHl----DHg~~~e~i~~ai~~GFtSVMiDgS~------~p~eENi~~Tk~vv~~ah~~ 128 (323)
T 2isw_A 59 MIYLKKLCEAALEKHPDIPICIHL----DHGDTLESVKMAIDLGFSSVMIDASH------HPFDENVRITKEVVAYAHAR 128 (323)
T ss_dssp THHHHHHHHHHHHHCTTSCEEEEE----EEECSHHHHHHHHHTTCSEEEECCTT------SCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEC----CCCCCHHHHHHHHHcCCCeEEecCCC------CCHHHHHHHHHHHHHHHHHc
Confidence 45556666666666 689999998 54445666777888999999994321 1111133444444332 2
Q ss_pred CCcEEE----cC----------CCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 332 TIPVIA----NG----------NIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 332 ~iPVi~----nG----------gI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++.|-+ .| -.++++++.++.+++|+|...++=|-...
T Consensus 129 gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~HG 179 (323)
T 2isw_A 129 SVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSHG 179 (323)
T ss_dssp TCEEEEEESCC----------CCCCCHHHHHHHHHHHCCSEEEECSSCCSS
T ss_pred CCeEEEEeCCccCCccCcccccccCCHHHHHHHHHHHCCCEEEEecCcccc
Confidence 444421 11 24889999999999999988877654443
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.6 Score=43.66 Aligned_cols=130 Identities=17% Similarity=0.166 Sum_probs=84.3
Q ss_pred CCCCCeeeeeccCC----HH--HHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCc
Q psy7343 201 PEDRPLIIQFCGND----SK--NLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d----~~--~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iP 273 (487)
....++++|....+ ++ ...+.++.++++ +++|.++ .++ .++.+++.+++|
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~-------------------~~~----~i~~i~~~~~~p 71 (234)
T 1yxy_A 15 KGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRAN-------------------SVR----DIKEIQAITDLP 71 (234)
T ss_dssp TTSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEE-------------------SHH----HHHHHHTTCCSC
T ss_pred hCCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecC-------------------CHH----HHHHHHHhCCCC
Confidence 34566777765433 56 677777777665 4555443 133 355677778999
Q ss_pred EEEEeeccc-c----cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHH
Q psy7343 274 VSCKIRIYQ-D----VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADV 347 (487)
Q Consensus 274 V~vKiR~~~-d----~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da 347 (487)
+..-++-.. + +....+.++.+.++|+|.|.+|...... ..+....+.++++++.. +.+|+. ++.+.+++
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~~---~~~~~~~~~i~~i~~~~~~~~v~~--~~~t~~ea 146 (234)
T 1yxy_A 72 IIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDR---HDGLDIASFIRQVKEKYPNQLLMA--DISTFDEG 146 (234)
T ss_dssp EEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCC---TTCCCHHHHHHHHHHHCTTCEEEE--ECSSHHHH
T ss_pred EEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccCC---CCCccHHHHHHHHHHhCCCCeEEE--eCCCHHHH
Confidence 953222211 1 2345677888899999999997653211 01112357888888876 666665 78899999
Q ss_pred HHHHHhcCCcEE
Q psy7343 348 EACLAQTGVAGV 359 (487)
Q Consensus 348 ~~~l~~~Gad~V 359 (487)
..+. +.|+|.|
T Consensus 147 ~~a~-~~Gad~i 157 (234)
T 1yxy_A 147 LVAH-QAGIDFV 157 (234)
T ss_dssp HHHH-HTTCSEE
T ss_pred HHHH-HcCCCEE
Confidence 8887 7899998
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=93.23 E-value=0.35 Score=47.49 Aligned_cols=108 Identities=11% Similarity=0.122 Sum_probs=67.1
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEeeccc--ccccHHHHHHHHHHcCCcEEEEEccccC-CCCCCCCCC---CHHHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ--DVNKTVEYARMLERAGCQLLAVHGRTVD-QRGMNTGLA---SWEHITA 326 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~--d~~~~~e~a~~le~~G~d~I~VhgRt~~-~~g~~~g~~---~~~~i~~ 326 (487)
.-..+.+...++.|.+.+++||++-+..|. +..+..+.++.++++|+++|.|-+.... ..+...|.. .-+.+.+
T Consensus 60 ~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~ 139 (295)
T 1xg4_A 60 ISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDR 139 (295)
T ss_dssp CSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHH
Confidence 345777778888888888999999887653 4556788888899999999999665422 112222221 1244444
Q ss_pred H---HhhC-CCcEEEcCCCCCH-----H----HHHHHHHhcCCcEEEe
Q psy7343 327 V---RKAL-TIPVIANGNIQCL-----A----DVEACLAQTGVAGVMT 361 (487)
Q Consensus 327 i---~~~~-~iPVi~nGgI~s~-----~----da~~~l~~~Gad~Vmi 361 (487)
| ++.- +.++..+|..... + +++. +++.|||++.+
T Consensus 140 I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~a-y~eAGAd~i~~ 186 (295)
T 1xg4_A 140 IRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQA-YVEAGAEMLFP 186 (295)
T ss_dssp HHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHH-HHHTTCSEEEE
T ss_pred HHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHH-HHHcCCCEEEE
Confidence 4 3332 3444444444332 2 2222 33689999987
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.86 Score=42.90 Aligned_cols=104 Identities=19% Similarity=0.188 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHH----HHHhhC-CC
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT----AVRKAL-TI 333 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~----~i~~~~-~i 333 (487)
+.+.++...+ .++-+++-+ . +..+. +.+...+.+.|-+-.|...+.|.--..+..+.+. .+++.. ++
T Consensus 106 ~~~k~~~A~~-~GL~~ivcV----g--e~~e~-~~~~~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~ 177 (225)
T 1hg3_A 106 LEAAIRRAEE-VGLMTMVCS----N--NPAVS-AAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEV 177 (225)
T ss_dssp HHHHHHHHHH-HTCEEEEEE----S--SHHHH-HHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHH-CCCEEEEEe----C--CHHHH-HHHhcCCCCEEEEeChhhhccCCCCCCCChhHHHHHHHHHHhccCCC
Confidence 4554444433 355555543 1 33333 3445667777777556443322000022233222 233333 68
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+|++.|+|++.+++..+. ..|+||+.||.+++.-+++
T Consensus 178 ~ilyggsV~~~n~~~~~~-~~~vDG~LVG~a~l~a~~~ 214 (225)
T 1hg3_A 178 KVLCGAGISTGEDVKKAI-ELGTVGVLLASGVTKAKDP 214 (225)
T ss_dssp EEEEESSCCSHHHHHHHH-HTTCSEEEESHHHHTCSSH
T ss_pred EEEEeCCCCcHHHHHHHH-hCCCCEEEeCHHHHCCcCH
Confidence 999999999999998887 7899999999999976654
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.34 Score=51.29 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+..+.++.+.++|+|.|.|..-. + . ....++.++++++.. ++||++ |+|.+.++++.+. +.|+|+|.+|-+
T Consensus 256 d~~era~aLveaGvd~I~Id~a~----g-~-~~~v~~~i~~i~~~~~~~~vi~-g~v~t~e~a~~~~-~aGad~i~vg~g 327 (511)
T 3usb_A 256 DAMTRIDALVKASVDAIVLDTAH----G-H-SQGVIDKVKEVRAKYPSLNIIA-GNVATAEATKALI-EAGANVVKVGIG 327 (511)
T ss_dssp THHHHHHHHHHTTCSEEEEECSC----T-T-SHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHH-HHTCSEEEECSS
T ss_pred chHHHHHHHHhhccceEEecccc----c-c-hhhhhhHHHHHHHhCCCceEEe-eeeccHHHHHHHH-HhCCCEEEECCC
Confidence 56777888899999999994321 0 0 112357899999887 578886 7899999999988 789999998643
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.35 Score=49.34 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=71.0
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCC-CCCCCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM-NTGLASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~-~~g~~~~~~i~~i 327 (487)
|+....+.+++.. +. .++.||++|--...+.++...+++.+.+.|..-|++-=|+....+. .....|+..+..+
T Consensus 232 gs~~~~n~~LL~~----~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~l 306 (385)
T 3nvt_A 232 GARNMQNFELLKA----AG-RVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPIL 306 (385)
T ss_dssp CGGGTTCHHHHHH----HH-TSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHH
T ss_pred CcccccCHHHHHH----HH-ccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHH
Confidence 3334456666554 32 4689999998665567788888999999998666553342222211 1233578889999
Q ss_pred HhhCCCcEEEc----CCCCCH--HHHHHHHHhcCCcEEEecccc
Q psy7343 328 RKALTIPVIAN----GNIQCL--ADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 328 ~~~~~iPVi~n----GgI~s~--~da~~~l~~~Gad~VmiGRa~ 365 (487)
++..++||+.. +|-+.. .-+.... ..||||++|=+-+
T Consensus 307 k~~~~lpV~~D~th~~G~r~~v~~~a~AAv-A~GA~gl~iE~H~ 349 (385)
T 3nvt_A 307 KKETHLPVMVDVTHSTGRKDLLLPCAKAAL-AIEADGVMAEVHP 349 (385)
T ss_dssp HHHBSSCEEEEHHHHHCCGGGHHHHHHHHH-HTTCSEEEEEBCS
T ss_pred HHhcCCCEEEcCCCCCCccchHHHHHHHHH-HhCCCEEEEEecC
Confidence 99889999653 222222 1233444 5899999998743
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=93.04 E-value=1.8 Score=40.58 Aligned_cols=132 Identities=10% Similarity=0.030 Sum_probs=70.5
Q ss_pred eeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc-ccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY-QDV 284 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~-~d~ 284 (487)
+=+|+. ..++.....++.+.+. |+ ..++.|...| .+.+...++.+++. +.-|++=.... .+.
T Consensus 69 lD~Kl~-DipnTv~~~~~~~~~~--------ga-d~vtvh~~~G------~~~l~~~~~~~~~~-g~~v~vLt~~s~~~~ 131 (228)
T 3m47_A 69 ADFKVA-DIPETNEKICRATFKA--------GA-DAIIVHGFPG------ADSVRACLNVAEEM-GREVFLLTEMSHPGA 131 (228)
T ss_dssp EEEEEC-SCHHHHHHHHHHHHHT--------TC-SEEEEESTTC------HHHHHHHHHHHHHH-TCEEEEECCCCSGGG
T ss_pred EEEeec-ccHhHHHHHHHHHHhC--------CC-CEEEEeccCC------HHHHHHHHHHHHhc-CCCeEEEEeCCCccH
Confidence 335554 3455544455544444 33 4455665433 34455555555432 33355422221 111
Q ss_pred -----ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC--CcEEEcCCCCCH-HHHHHHHHhcCC
Q psy7343 285 -----NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT--IPVIANGNIQCL-ADVEACLAQTGV 356 (487)
Q Consensus 285 -----~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~--iPVi~nGgI~s~-~da~~~l~~~Ga 356 (487)
.....++++..+.|++++.+ +.+ ..+.++++++..+ .++ ..+||... .+. +.+ +.|+
T Consensus 132 ~~~~~~~~~~~a~~a~~~G~~GvV~-~at-----------~~~e~~~ir~~~~~~~~i-v~PGI~~~g~~p-~~~-~aGa 196 (228)
T 3m47_A 132 EMFIQGAADEIARMGVDLGVKNYVG-PST-----------RPERLSRLREIIGQDSFL-ISPGVGAQGGDP-GET-LRFA 196 (228)
T ss_dssp GTTHHHHHHHHHHHHHHTTCCEEEC-CSS-----------CHHHHHHHHHHHCSSSEE-EECC----------CG-GGTC
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEE-CCC-----------ChHHHHHHHHhcCCCCEE-EecCcCcCCCCH-hHH-HcCC
Confidence 12356778888999999887 322 1245677777664 455 66777632 245 666 6899
Q ss_pred cEEEeccccccCc
Q psy7343 357 AGVMTAEGNLYNP 369 (487)
Q Consensus 357 d~VmiGRa~l~~P 369 (487)
|.+.+||+++..+
T Consensus 197 d~iVvGr~I~~a~ 209 (228)
T 3m47_A 197 DAIIVGRSIYLAD 209 (228)
T ss_dssp SEEEECHHHHTSS
T ss_pred CEEEECHHHhCCC
Confidence 9999999987543
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=93.03 E-value=0.61 Score=45.71 Aligned_cols=115 Identities=17% Similarity=0.210 Sum_probs=73.9
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-CCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~~~~~~i~~i 327 (487)
|+....+.+++.++ . .++.||.+|--...+.++...+++.+...|..-+++.=|+..- .|.. ..++..+..+
T Consensus 115 gA~~~~n~~Ll~~~----a-~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~~--~y~~~~~dl~~i~~l 187 (292)
T 1o60_A 115 PAFLARQTDLVEAM----A-KTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTNF--GYDNLIVDMLGFSVM 187 (292)
T ss_dssp CGGGTTCHHHHHHH----H-HTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEEC--STTCEECCTTHHHHH
T ss_pred CcccccCHHHHHHH----H-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC--CCCccccCHHHHHHH
Confidence 45555677766553 3 4689999997655577889999999999998666654554321 1221 1477888889
Q ss_pred HhhC-CCcEEEc-----------CCCCCH-----HHH-HHHHHhcCCcEEEeccccccCccc
Q psy7343 328 RKAL-TIPVIAN-----------GNIQCL-----ADV-EACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 328 ~~~~-~iPVi~n-----------GgI~s~-----~da-~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++.. +.||++. |+-... ..+ .... ..||+|+||=+-+--+-.+
T Consensus 188 k~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAv-a~Ga~Gl~IE~H~~~d~al 248 (292)
T 1o60_A 188 KKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGL-AVGIAGLFLEAHPNPNQAK 248 (292)
T ss_dssp HHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHH-HHCCSEEEEEEESSGGGCS
T ss_pred HhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHH-HcCCCEEEEEecCCcccCC
Confidence 9887 8999982 122122 223 3334 5799999998765444333
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.44 Score=46.43 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=69.3
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-CCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~~~~~~i~~i 327 (487)
|+....+.+++.++ . .++.||.+|--...+.++....++.+...|...+++.=|+..- .|.. ..+...+..+
T Consensus 112 ga~~~~n~~ll~~~----a-~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~~--~~~~~~~dl~~i~~l 184 (280)
T 2qkf_A 112 PAFLARQTDLVVAM----A-KTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSF--GYDNLVVDMLGFGVM 184 (280)
T ss_dssp CGGGTTBHHHHHHH----H-HTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEEC--STTCEECCTTHHHHH
T ss_pred CcccccCHHHHHHH----H-cCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC--CCCccccCHHHHHHH
Confidence 44445667765553 2 4699999997655577889999999999998666554454321 1211 1467788889
Q ss_pred HhhC-CCcEEEc-----------CCCCCH------HHHHHHHHhcCCcEEEeccccc
Q psy7343 328 RKAL-TIPVIAN-----------GNIQCL------ADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 328 ~~~~-~iPVi~n-----------GgI~s~------~da~~~l~~~Gad~VmiGRa~l 366 (487)
++.. +.||++. |+-... .-+.... ..|+||+||=+-+-
T Consensus 185 k~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aav-a~Ga~G~~IE~H~~ 240 (280)
T 2qkf_A 185 KQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGM-ATRLAGLFLESHPD 240 (280)
T ss_dssp HHHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHH-TTCCSEEEEEC---
T ss_pred HHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHHHHH-HcCCCEEEEeecCC
Confidence 9887 8999983 222222 1223334 68999999877543
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.79 Score=46.68 Aligned_cols=130 Identities=10% Similarity=0.126 Sum_probs=83.7
Q ss_pred CCeeeeeccC-CHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeec
Q psy7343 204 RPLIIQFCGN-DSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRI 280 (487)
Q Consensus 204 ~Pv~Vqi~g~-d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~ 280 (487)
.|+...+... +++++.+.++. +++.+..+-+..|- ..|.+.+. ++++.+ ++.+.+-.--
T Consensus 138 v~~~~~~~~~~~~e~~~~~~~~~~~~G~~~~K~Kv~~--------------~~d~~~v~----avR~~~~~~~l~vDaN~ 199 (388)
T 3qld_A 138 VEVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIAP--------------GRDRAAIK----AVRLRYPDLAIAADANG 199 (388)
T ss_dssp EEBEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECBT--------------TBSHHHHH----HHHHHCTTSEEEEECTT
T ss_pred EEEeEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCc--------------HHHHHHHH----HHHHHCCCCeEEEECCC
Confidence 4555555533 48888776654 44556666555431 13444444 455554 3334443222
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+|+..+... ++.+++.++..|- | + . ...+++..+++++.+++||.+.=.+.+..|+.++++...+|.|+
T Consensus 200 ~~~~~~A~~-~~~l~~~~i~~iE-------e-P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~ 268 (388)
T 3qld_A 200 SYRPEDAPV-LRQLDAYDLQFIE-------Q-P-L-PEDDWFDLAKLQASLRTPVCLDESVRSVRELKLTARLGAARVLN 268 (388)
T ss_dssp CCCGGGHHH-HHHGGGGCCSCEE-------C-C-S-CTTCHHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTCCSEEE
T ss_pred CCChHHHHH-HHHHhhCCCcEEE-------C-C-C-CcccHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEE
Confidence 456666665 6788888776552 1 1 1 23468889999999999999988999999999999766788887
Q ss_pred ec
Q psy7343 361 TA 362 (487)
Q Consensus 361 iG 362 (487)
+=
T Consensus 269 ~k 270 (388)
T 3qld_A 269 VK 270 (388)
T ss_dssp EC
T ss_pred EC
Confidence 53
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=92.90 E-value=0.44 Score=44.87 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=60.5
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
|++.=+|.. +.++..+.++.+.+.|++.|.+.-+ .....+.++++++.+.--+++.|-+.+.+++..++
T Consensus 18 ~ii~vir~~-~~~~~~~~~~al~~gGv~~iel~~k---------~~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~- 86 (224)
T 1vhc_A 18 KIVPVIALD-NADDILPLADTLAKNGLSVAEITFR---------SEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAK- 86 (224)
T ss_dssp CEEEEECCS-SGGGHHHHHHHHHHTTCCEEEEETT---------STTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHH-
T ss_pred CeEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEecc---------CchHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHH-
Confidence 555555543 6778899999999999999999322 22335788888888743456667788999999999
Q ss_pred hcCCcEEEecc
Q psy7343 353 QTGVAGVMTAE 363 (487)
Q Consensus 353 ~~Gad~VmiGR 363 (487)
+.|||+|..+.
T Consensus 87 ~aGAd~v~~p~ 97 (224)
T 1vhc_A 87 SSGADFVVTPG 97 (224)
T ss_dssp HHTCSEEECSS
T ss_pred HCCCCEEEECC
Confidence 78999999883
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=92.88 E-value=1.8 Score=40.66 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHH----HHHhhC-CC
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT----AVRKAL-TI 333 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~----~i~~~~-~i 333 (487)
+.+.++...+ .++-+++-+ . +..+. +.+...+.+.|-+-.|...+.|.--..+..+.+. .+++.. ++
T Consensus 103 ~~~k~~~A~~-~GL~~ivcV----g--e~~e~-~~~~~~~~~iIayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~~~ 174 (226)
T 1w0m_A 103 LARLVAKAKS-LGLDVVVCA----P--DPRTS-LAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEV 174 (226)
T ss_dssp HHHHHHHHHH-TTCEEEEEE----S--SHHHH-HHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHH-CCCEEEEEe----C--CHHHH-HHHhcCCCCEEEEcChhhhccCCCCCCCChhHHHHHHHHHHhccCCC
Confidence 4555544433 355555544 1 33333 3455667777777555433321000022233222 233333 68
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+|++.|+|++.+++..+. ..|+||+.||.+++.-+++
T Consensus 175 ~ilyggsV~~~n~~~~~~-~~giDG~LVG~a~l~a~~~ 211 (226)
T 1w0m_A 175 SVITGAGIESGDDVAAAL-RLGTRGVLLASAAVKAKDP 211 (226)
T ss_dssp EEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHTCSSH
T ss_pred EEEEeCCCCcHHHHHHHH-hCCCCEEEECHHHHCCcCH
Confidence 999999999999998887 7899999999999976654
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.17 Score=49.94 Aligned_cols=93 Identities=18% Similarity=0.229 Sum_probs=58.7
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEc-CCCCCHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIAN-GNIQCLADVE 348 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~n-GgI~s~~da~ 348 (487)
.|+. ++++ |.+...+.++.+.+.|+++|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+. |+..+ +++.
T Consensus 23 TPf~-dg~i--D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~-~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st-~~ai 97 (306)
T 1o5k_A 23 TPFK-NGEL--DLESYERLVRYQLENGVNALIVLGTTGESP-TVNEDEREKLVSRTLEIVDGKIPVIVGAGTNST-EKTL 97 (306)
T ss_dssp CCEE-TTEE--CHHHHHHHHHHHHHTTCCEEEESSGGGTGG-GCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCH-HHHH
T ss_pred cCcC-CCCc--CHHHHHHHHHHHHHcCCCEEEeCccccchh-hCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccH-HHHH
Confidence 4665 5432 556778888889999999999966654432 121111124455555544 6899854 55444 4444
Q ss_pred HH---HHhcCCcEEEeccccccCc
Q psy7343 349 AC---LAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 349 ~~---l~~~Gad~VmiGRa~l~~P 369 (487)
++ .++.|||++++-...+..|
T Consensus 98 ~la~~A~~~Gadavlv~~P~y~~~ 121 (306)
T 1o5k_A 98 KLVKQAEKLGANGVLVVTPYYNKP 121 (306)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCC
T ss_pred HHHHHHHhcCCCEEEECCCCCCCC
Confidence 33 3357999999998877666
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.17 Score=49.59 Aligned_cols=93 Identities=18% Similarity=0.152 Sum_probs=58.0
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEc-CCCCCHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIAN-GNIQCLADVE 348 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~n-GgI~s~~da~ 348 (487)
.|+. ++++ |.+...+.++.+.+.|+++|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+. |+..+ +++.
T Consensus 11 TPf~-dg~i--D~~~l~~lv~~li~~Gv~gl~~~GttGE~~-~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t-~~ai 85 (294)
T 2ehh_A 11 TPFK-EGEV--DYEALGNLIEFHVDNGTDAILVCGTTGESP-TLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNAT-HEAV 85 (294)
T ss_dssp CCEE-TTEE--CHHHHHHHHHHHHTTTCCEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCH-HHHH
T ss_pred cCcC-CCCc--CHHHHHHHHHHHHHCCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCH-HHHH
Confidence 4555 5422 555778888889999999999966554432 121111224455555544 6899864 55444 4444
Q ss_pred HH---HHhcCCcEEEeccccccCc
Q psy7343 349 AC---LAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 349 ~~---l~~~Gad~VmiGRa~l~~P 369 (487)
++ .++.|||++++....+..|
T Consensus 86 ~la~~A~~~Gadavlv~~P~y~~~ 109 (294)
T 2ehh_A 86 HLTAHAKEVGADGALVVVPYYNKP 109 (294)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCC
T ss_pred HHHHHHHhcCCCEEEECCCCCCCC
Confidence 33 3457999999998877655
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.18 Score=49.31 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=57.9
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEE-cCCCCCHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA-NGNIQCLADVE 348 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~-nGgI~s~~da~ 348 (487)
.|+. ++++ |.+...+.++.+.+.|+++|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+ .|+..+.+ +.
T Consensus 11 TPf~-dg~i--D~~~l~~lv~~li~~Gv~gl~~~GttGE~~-~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~-ai 85 (289)
T 2yxg_A 11 TPFK-NKEV--DFDGLEENINFLIENGVSGIVAVGTTGESP-TLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEE-AI 85 (289)
T ss_dssp CCEE-TTEE--CHHHHHHHHHHHHHTTCSEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHH-HH
T ss_pred cCcC-CCCc--CHHHHHHHHHHHHHCCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHH-HH
Confidence 4555 5432 556778888889999999999966554432 121111124455555544 699985 45544444 43
Q ss_pred HH---HHhcCCcEEEeccccccCc
Q psy7343 349 AC---LAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 349 ~~---l~~~Gad~VmiGRa~l~~P 369 (487)
++ .++.|||++++....+..|
T Consensus 86 ~la~~a~~~Gadavlv~~P~y~~~ 109 (289)
T 2yxg_A 86 ELSVFAEDVGADAVLSITPYYNKP 109 (289)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCC
T ss_pred HHHHHHHhcCCCEEEECCCCCCCC
Confidence 33 3457999999998877655
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.13 Score=51.31 Aligned_cols=130 Identities=18% Similarity=0.260 Sum_probs=71.0
Q ss_pred CeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeeccc
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQ 282 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~ 282 (487)
|+...+...++++..+.++ ++.+..+.+..|.+ |..+..| .+.++++++.+ ++.+.+-.--+|
T Consensus 71 ~~~~ti~~~~~e~~~~~~~--~~G~~~~KiKvg~~---------g~~~~~d----~~~v~avR~~~G~~~~L~vDaN~~w 135 (327)
T 2opj_A 71 PVNATVPAVGPEEAARIVA--SSGCTTAKVKVAER---------GQSEAND----VARVEAVRDALGPRGRVRIDVNGAW 135 (327)
T ss_dssp EBCEEECSCCHHHHHHHHH--HHCCSEEEEECCC---------------CH----HHHHHHHHHHHCTTSEEEEECTTCS
T ss_pred EEeEEeCCCCHHHHHHHHH--HCCCCEEEEEeCCC---------CCCHHHH----HHHHHHHHHHhCCCCEEEEECCCCC
Confidence 4444444457776554443 33466665554431 1112222 34566677665 344444332346
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+..+..++++.+++.++..|- | + . .+++..+++++.+++||.+.=.+.+..|+.++++...+|.+++
T Consensus 136 ~~~~A~~~~~~L~~~~l~~iE-------q-P-~---~~~~~~~~l~~~~~iPIa~dEs~~~~~~~~~~i~~~a~d~i~i 202 (327)
T 2opj_A 136 DVDTAVRMIRLLDRFELEYVE-------Q-P-C---ATVDELAEVRRRVSVPIAADESIRRAEDPLRVRDAEAADVVVL 202 (327)
T ss_dssp CHHHHHHHHHHHGGGCEEEEE-------C-C-S---SSHHHHHHHHHHCSSCEEC-----------CTTTTTCCSBEEE
T ss_pred CHHHHHHHHHHHHhcCCcEEe-------C-C-C---CCHHHHHHHHhhCCCCEEcCCCCCCHHHHHHHHHhCCCCEEEe
Confidence 667778888899887766442 2 1 1 2578889999999999999889999999999886666888876
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.86 Score=43.89 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=71.6
Q ss_pred HHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcE-EEEeeccc--ccccHHHHHHHHHH
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV-SCKIRIYQ--DVNKTVEYARMLER 296 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV-~vKiR~~~--d~~~~~e~a~~le~ 296 (487)
.|++++++ +|.|=+ |-....+..|. -..+.-..+......++|++.++.|+ ++-+-.+. +.++..+-+..+.+
T Consensus 29 sA~l~e~aG~d~ilv--Gdsl~~~~lG~-~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a~rl~k 105 (264)
T 1m3u_A 29 FAKLFADEGLNVMLV--GDSLGMTVQGH-DSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMR 105 (264)
T ss_dssp HHHHHHHHTCCEEEE--CTTHHHHTTCC-SSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEE--CHHHHHHHcCC-CCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHHHHHHH
Confidence 45566665 666644 33122333332 22233456777777788888887654 54443321 23334444557778
Q ss_pred cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE-----------cCCC----CCHHHHHHHH------HhcC
Q psy7343 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA-----------NGNI----QCLADVEACL------AQTG 355 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~-----------nGgI----~s~~da~~~l------~~~G 355 (487)
+|+++|.+-|. ....+.|+.+.+ .+|||++ .||. ++.+.+.+++ ++.|
T Consensus 106 aGa~aVklEgg----------~e~~~~I~al~~-agipV~gHiGLtPq~v~~~ggf~v~grt~~~a~~~i~rA~a~~eAG 174 (264)
T 1m3u_A 106 AGANMVKIEGG----------EWLVETVQMLTE-RAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAG 174 (264)
T ss_dssp TTCSEEECCCS----------GGGHHHHHHHHH-TTCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEECCc----------HHHHHHHHHHHH-CCCCeEeeecCCceeecccCCeEEEeCCHHHHHHHHHHHHHHHHCC
Confidence 99999998332 122355666654 3799983 3554 3544444433 3579
Q ss_pred CcEEEe
Q psy7343 356 VAGVMT 361 (487)
Q Consensus 356 ad~Vmi 361 (487)
|+++.+
T Consensus 175 A~~ivl 180 (264)
T 1m3u_A 175 AQLLVL 180 (264)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 998876
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=1.2 Score=43.81 Aligned_cols=106 Identities=17% Similarity=0.113 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~ 332 (487)
.+.+..+++.+.+ .++||.+.. |-....+.++...+.|.+.||+.|-. +.-.-+.+..+++.+. .+
T Consensus 58 ~~~~~~~v~~~a~-~~VPValHl----DHg~~~e~~~~ai~~GFtSVMiDgS~------~p~eENi~~Tk~vv~~ah~~g 126 (305)
T 1rvg_A 58 RALTLMAVELAKE-ARVPVAVHL----DHGSSYESVLRALRAGFTSVMIDKSH------EDFETNVRETRRVVEAAHAVG 126 (305)
T ss_dssp HHHHHHHHHHHHH-CSSCEEEEE----EEECSHHHHHHHHHTTCSEEEECCTT------SCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh-CCCcEEEEC----CCCCCHHHHHHHHHcCCCeeeeCCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 3455666776666 789999988 44444566677778999999994321 1111133444444332 24
Q ss_pred CcEEE----cC-------------CCCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 333 IPVIA----NG-------------NIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 333 iPVi~----nG-------------gI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
+.|-+ .| -.++++++.++.+++|+|...++=|-....+-|
T Consensus 127 vsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~ 183 (305)
T 1rvg_A 127 VTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKG 183 (305)
T ss_dssp CEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCS
T ss_pred CEEEEEEeeccCccCCccccccccccCCHHHHHHHHHHHCCCEEEEecCccccccCC
Confidence 44322 01 138899999999999999988776655444433
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.54 E-value=1.4 Score=42.24 Aligned_cols=100 Identities=16% Similarity=0.270 Sum_probs=59.8
Q ss_pred HHHHHHHHhhh---ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC----------------
Q psy7343 259 LTNLVSSLRQA---VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA---------------- 319 (487)
Q Consensus 259 i~eiv~~v~~~---~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~---------------- 319 (487)
+.+..+.+++. .-+|.+..+ .++.++..++++.+++.|+|.|.+ |--... +...|+.
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i~~g--~p~~~~~~~~~~~l~~~G~D~IEl-G~P~sd-P~adgp~i~~a~~~al~~G~~~~ 79 (262)
T 2ekc_A 4 ISDKFTELKEKREKALVSYLMVG--YPDYETSLKAFKEVLKNGTDILEI-GFPFSD-PVADGPTIQVAHEVALKNGIRFE 79 (262)
T ss_dssp HHHHHHHHHHHTBCEEEEEEETT--SSCHHHHHHHHHHHHHTTCSEEEE-ECCCSC-CTTSCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCceEEEEecCC--CCChHHHHHHHHHHHHcCCCEEEE-CCCCCC-cccccHHHHHHHHHHHHcCCCHH
Confidence 34444444432 224455443 234457899999999999999999 431111 1111111
Q ss_pred -CHHHHHHHHhhC-CCcEEEcCCCCC-----HHHHHHHHHhcCCcEEEec
Q psy7343 320 -SWEHITAVRKAL-TIPVIANGNIQC-----LADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 320 -~~~~i~~i~~~~-~iPVi~nGgI~s-----~~da~~~l~~~Gad~VmiG 362 (487)
.++.++++++.+ ++|++..|..+. .+...+...+.|+|++.+.
T Consensus 80 ~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~ 129 (262)
T 2ekc_A 80 DVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVP 129 (262)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECT
T ss_pred HHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEEC
Confidence 236688889888 999999643321 1333333447899999984
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=92.50 E-value=0.83 Score=43.18 Aligned_cols=135 Identities=11% Similarity=0.106 Sum_probs=75.7
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cC--c--EEEE
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QV--P--VSCK 277 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~i--P--V~vK 277 (487)
.++=+|+. ..++.....++.+.++ |+ ..++.|...| .+.+.++++.+++.. +. | +.+.
T Consensus 57 v~lD~kl~-Dip~t~~~~~~~~~~~--------Ga-d~vtvH~~~g------~~~l~~~~~~~~~~~~~g~~~~~~~~V~ 120 (239)
T 1dbt_A 57 LFLDLKLH-DIPTTVNKAMKRLASL--------GV-DLVNVHAAGG------KKMMQAALEGLEEGTPAGKKRPSLIAVT 120 (239)
T ss_dssp EEEEEEEC-SCHHHHHHHHHHHHTT--------TC-SEEEEEGGGC------HHHHHHHHHHHHHHSCTTSCCCEEEEEC
T ss_pred EEEEeccc-cchHHHHHHHHHHHhc--------CC-CEEEEeCcCC------HHHHHHHHHHHHhhhccCCCCccEEEEE
Confidence 44556775 5666655566655555 43 4455565433 233455566665431 33 4 4444
Q ss_pred eeccc---cc-----c--cHHHHHHH----HHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCC
Q psy7343 278 IRIYQ---DV-----N--KTVEYARM----LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQ 342 (487)
Q Consensus 278 iR~~~---d~-----~--~~~e~a~~----le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~ 342 (487)
..... +. - +..+.... ..+.|.++++... +.++++++.. +.+++..|||+
T Consensus 121 ~~ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~v~~~---------------~~i~~lr~~~~~~~i~v~gGI~ 185 (239)
T 1dbt_A 121 QLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSV---------------HEAKAIYQAVSPSFLTVTPGIR 185 (239)
T ss_dssp SCTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCG---------------GGHHHHTTTSCTTCEEEECCBC
T ss_pred EcCCCCHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCEEEECH---------------HHHHHHHHhcCCCcEEEeCCcC
Confidence 32211 11 0 11222222 3567888865521 2356666666 36789999997
Q ss_pred CHHH----------HHHHHHhcCCcEEEeccccccCcc
Q psy7343 343 CLAD----------VEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 343 s~~d----------a~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.... ..+++ +.|+|.+.+||+++..++
T Consensus 186 ~~~~~~~dq~rv~tp~~a~-~aGad~iVvGr~I~~a~d 222 (239)
T 1dbt_A 186 MSEDAANDQVRVATPAIAR-EKGSSAIVVGRSITKAED 222 (239)
T ss_dssp CTTSCCTTCSSCBCHHHHH-HTTCSEEEECHHHHTSSC
T ss_pred CCCCCccceeccCCHHHHH-HcCCCEEEEChhhcCCCC
Confidence 5432 25666 689999999999887554
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=92.30 E-value=0.23 Score=48.62 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=55.9
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+.....++.+.+.|+++|.+-|-|.+.. .++-.-..+.++.+.+.+ ++|||+.-|-.+.+++.++ .++.|||
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~-~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 99 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGTTAESP-TLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGAD 99 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGG-GSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccccc-cCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCC
Confidence 566778888889999999999966554432 121111124555555554 6899875444455555544 3357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++....+..|
T Consensus 100 avlv~~P~y~~~ 111 (292)
T 3daq_A 100 AIMLITPYYNKT 111 (292)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 999998776665
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=92.29 E-value=0.82 Score=42.56 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHH---H------HHHHHHhcCC
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLA---D------VEACLAQTGV 356 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~---d------a~~~l~~~Ga 356 (487)
.....++. .+.|+| +... .+.++++++.++.+ +..+||.-.. | ..+ + +.|+
T Consensus 127 ~v~~~a~~-~e~G~d-vV~~---------------~~~~~~ir~~~~~~-~v~pGI~~~~~~~dq~rv~t~~~-i-~aGa 186 (213)
T 1vqt_A 127 YMDRIEKL-NKLGCD-FVLP---------------GPWAKALREKIKGK-ILVPGIRMEVKADDQKDVVTLEE-M-KGIA 186 (213)
T ss_dssp HHHHHHHH-HHHTCE-EECC---------------HHHHHHHTTTCCSC-EEECCBC---------CCBCHHH-H-TTTC
T ss_pred HHHHHHHH-hcCCCE-EEEc---------------HHHHHHHHHHCCCC-EEECCCCCCCCccchhhcCCHHH-H-HCCC
Confidence 45667778 889999 4331 14577788877777 7778886432 2 566 7 7899
Q ss_pred cEEEeccccccCcc
Q psy7343 357 AGVMTAEGNLYNPA 370 (487)
Q Consensus 357 d~VmiGRa~l~~P~ 370 (487)
|++.+||+++..++
T Consensus 187 d~iVvGR~I~~a~d 200 (213)
T 1vqt_A 187 NFAVLGREIYLSEN 200 (213)
T ss_dssp SEEEESHHHHTSSC
T ss_pred CEEEEChhhcCCCC
Confidence 99999999886644
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.26 Score=48.52 Aligned_cols=85 Identities=25% Similarity=0.260 Sum_probs=53.8
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEc-CCCCCHHHHHHH---HHhcCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIAN-GNIQCLADVEAC---LAQTGV 356 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~n-GgI~s~~da~~~---l~~~Ga 356 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+. |+..+.+ +.++ .++.||
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~-~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~-ai~la~~A~~~Ga 108 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGGTTGESP-TLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHA-SIDLTKKATEVGV 108 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHH-HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHH-HHHHHHHHHhcCC
Confidence 445677888888899999999966554432 121111124455555544 6899864 5544444 4433 345799
Q ss_pred cEEEeccccccCc
Q psy7343 357 AGVMTAEGNLYNP 369 (487)
Q Consensus 357 d~VmiGRa~l~~P 369 (487)
|++++....+..|
T Consensus 109 davlv~~P~y~~~ 121 (301)
T 1xky_A 109 DAVMLVAPYYNKP 121 (301)
T ss_dssp SEEEEECCCSSCC
T ss_pred CEEEEcCCCCCCC
Confidence 9999998877665
|
| >2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.20 E-value=0.71 Score=44.89 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=76.3
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARM 293 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~ 293 (487)
|.+.+.+.++.+.+..++ +...|.+|....-..+.-.++++.+.+ .+||++.+-- .+..+..+.++.
T Consensus 17 D~~~l~~lv~~li~~v~g----------l~v~GttGE~~~Ls~~Er~~v~~~~~~--rvpviaGvg~-~~t~~ai~la~~ 83 (283)
T 2pcq_A 17 DEEAFRELAQALEPLVDG----------LLVYGSNGEGVHLTPEERARGLRALRP--RKPFLVGLME-ETLPQAEGALLE 83 (283)
T ss_dssp CHHHHHHHHHHHGGGSSC----------CEETCTTTTGGGSCHHHHHHHHHTCCC--SSCCEEEECC-SSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCE----------EEECCcCcCchhcCHHHHHHHHHHHHh--CCcEEEeCCC-CCHHHHHHHHHH
Confidence 666777766644332443 445565676654456666778887776 7899987621 144578888999
Q ss_pred HHHcCCcEEEEEccccCCCCCC-CCCCCHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 294 LERAGCQLLAVHGRTVDQRGMN-TGLASWEHITAVRKALTIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 294 le~~G~d~I~VhgRt~~~~g~~-~g~~~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+++.|+|++++..- ...+ . +.....+.++.|.+ ++||+. | |---+++.+.++.
T Consensus 84 A~~~Gadavlv~~P-~y~~--~~~~~~l~~~f~~va~--~lPiilYn~P~~tg~~l~~~~~~~La 143 (283)
T 2pcq_A 84 AKAAGAMALLATPP-RYYH--GSLGAGLLRYYEALAE--KMPLFLYHVPQNTKVDLPLEAVEALA 143 (283)
T ss_dssp HHHHTCSEEEECCC-CTTG--GGTTTHHHHHHHHHHH--HSCEEEEECHHHHCCCCCHHHHHHHT
T ss_pred HHhcCCCEEEecCC-cCCC--CCCHHHHHHHHHHHhc--CCCEEEEeCccccCcCCCHHHHHHHh
Confidence 99999999999321 1000 0 11123467777777 899864 4 5446788877775
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=92.17 E-value=0.33 Score=51.06 Aligned_cols=71 Identities=23% Similarity=0.405 Sum_probs=55.9
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+..+.++.+.++|+|.|.++.-. | + ....++.++++++.+ ++||+. |++.+.+++..+. +.|+|+|.+|-
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~----G-~-~~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~-~~G~d~I~v~~ 307 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAH----G-H-SRRVIETLEMIKADYPDLPVVA-GNVATPEGTEALI-KAGADAVKVGV 307 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSC----C-S-SHHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHH-HTTCSEEEECS
T ss_pred HhHHHHHHHHHHhCCCEEEEEecC----C-c-hHHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHH-HcCCCEEEEcC
Confidence 456778888999999999995321 1 1 112578999999998 799987 7899999998887 78999999954
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.31 Score=47.99 Aligned_cols=85 Identities=24% Similarity=0.295 Sum_probs=54.1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEc-CCCCCHHHHHHH---HHhcCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIAN-GNIQCLADVEAC---LAQTGV 356 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~n-GgI~s~~da~~~---l~~~Ga 356 (487)
|.+...+.++.+.+.|+|+|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+. |+..+ +++.++ .++.||
T Consensus 35 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~-~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st-~~ai~la~~A~~~Ga 112 (304)
T 3cpr_A 35 DIAAGREVAAYLVDKGLDSLVLAGTTGESP-TTTAAEKLELLKAVREEVGDRAKLIAGVGTNNT-RTSVELAEAAASAGA 112 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTTT-TSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCH-HHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCH-HHHHHHHHHHHhcCC
Confidence 455678888888899999999966654432 121111124455555544 6999854 55444 444433 345799
Q ss_pred cEEEeccccccCc
Q psy7343 357 AGVMTAEGNLYNP 369 (487)
Q Consensus 357 d~VmiGRa~l~~P 369 (487)
|++++....+..|
T Consensus 113 davlv~~P~y~~~ 125 (304)
T 3cpr_A 113 DGLLVVTPYYSKP 125 (304)
T ss_dssp SEEEEECCCSSCC
T ss_pred CEEEECCCCCCCC
Confidence 9999998876555
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.27 Score=48.22 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=54.3
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+.....++.+.+.|+++|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+.=|=.+.+++.++ .++.|||
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~-~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 104 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVGTTGESA-TLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGAD 104 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCcc-cCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 445677888888899999999966554432 121111124455555544 6899865444445554443 3358999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++....+..|
T Consensus 105 avlv~~P~y~~~ 116 (297)
T 3flu_A 105 YTLSVVPYYNKP 116 (297)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 999998776655
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=92.07 E-value=0.71 Score=46.88 Aligned_cols=120 Identities=16% Similarity=0.210 Sum_probs=79.4
Q ss_pred CCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHH
Q psy7343 213 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 213 ~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~ 290 (487)
.+++++.+.++ .+++.+..+.+..| | ..|.+. ++++++++ ++.+.+-..-+|+.++. ++
T Consensus 160 ~~~~~~~~~a~~~~~~G~~~~KiKvg-~-------------~~d~~~----v~avr~a~~~~~l~vDaN~~~~~~~a-~~ 220 (386)
T 1wue_A 160 EDLPQLLKQVQLAVEKGYQRVKLKIR-P-------------GYDVEP----VALIRQHFPNLPLMVDANSAYTLADL-PQ 220 (386)
T ss_dssp SCHHHHHHHHHHHHHTTCSCEEEECB-T-------------TBSHHH----HHHHHHHCTTSCEEEECTTCCCGGGH-HH
T ss_pred CCHHHHHHHHHHHHHhhhheEEEeeC-c-------------HHHHHH----HHHHHHhCCCCeEEEeCCCCCCHHHH-HH
Confidence 35777765554 44444555555433 1 124444 45555554 34444433335666677 88
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.++++++..|- | + . ...+++..+++++.+++||.+.-.+.+..++.++++...+|.|++
T Consensus 221 ~~~l~~~~i~~iE-------q-P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~i 281 (386)
T 1wue_A 221 LQRLDHYQLAMIE-------Q-P-F-AADDFLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSINL 281 (386)
T ss_dssp HHGGGGSCCSCEE-------C-C-S-CTTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHhCCCeEEe-------C-C-C-CcccHHHHHHHHHhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEE
Confidence 8888888877663 1 1 1 234688899999999999999889999999999997677898876
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=92.06 E-value=0.26 Score=48.58 Aligned_cols=86 Identities=26% Similarity=0.267 Sum_probs=55.2
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+...+.++.+.+.|+|+|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+.-|=.+.+++.++ .++.|||
T Consensus 34 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~-~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 112 (304)
T 3l21_A 34 DTATAARLANHLVDQGCDGLVVSGTTGESP-TTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH 112 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccchh-hCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 455678888888999999999966554432 121111124555555554 6899865444445555444 3357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++....+..|
T Consensus 113 avlv~~P~y~~~ 124 (304)
T 3l21_A 113 GLLVVTPYYSKP 124 (304)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 999998877665
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=2 Score=42.29 Aligned_cols=139 Identities=16% Similarity=0.214 Sum_probs=87.1
Q ss_pred CCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEE-ee
Q psy7343 202 EDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK-IR 279 (487)
Q Consensus 202 ~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vK-iR 279 (487)
.+.||.+.+. |.+.+...++.+ ..|+- +-..+. --.+..|-+...++++.... .++.|-+- ++
T Consensus 73 ~~VPValHLDHg~~~e~~~~ai~---~GFtS----------VMiDgS-~~p~eeNi~~Tk~vv~~ah~-~gvsVEaELG~ 137 (307)
T 3n9r_A 73 PHIPVALHLDHGTTFESCEKAVK---AGFTS----------VMIDAS-HHAFEENLELTSKVVKMAHN-AGVSVEAELGR 137 (307)
T ss_dssp TTSCEEEEEEEECSHHHHHHHHH---HTCSE----------EEECCT-TSCHHHHHHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred CCCcEEEECCCCCCHHHHHHHHH---hCCCc----------EEEECC-CCCHHHHHHHHHHHHHHHHH-cCCeEEEEeee
Confidence 3579999998 666555444432 22322 222221 11223456667777765543 36666654 23
Q ss_pred cccc------------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCC--C--CCCHHHHHHHHhhCCCcEEEcCCCCC
Q psy7343 280 IYQD------------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT--G--LASWEHITAVRKALTIPVIANGNIQC 343 (487)
Q Consensus 280 ~~~d------------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~--g--~~~~~~i~~i~~~~~iPVi~nGgI~s 343 (487)
+++. ..++++..+..+++|+|.+.+.=.|.-+. |. + .-+++.+++|++..++|++.-|+=.-
T Consensus 138 igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~--Yk~~~~p~Ld~~~L~~I~~~~~~PLVlHGgS~v 215 (307)
T 3n9r_A 138 LMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGA--FKFKGEPKLDFERLQEVKRLTNIPLVLHGASAI 215 (307)
T ss_dssp CCCC----------CCSCCHHHHHHHHHHHCCSEEEECSSCCSSS--BCCSSSCCCCHHHHHHHHHHHCSCEEESSCCCC
T ss_pred eccccCCcccccccccCCCHHHHHHHHHHHCCCEEEEecCCcccc--cCCCCCCccCHHHHHHHHhcCCCCeEEeCCCCc
Confidence 3321 13678888888999999998832332222 43 2 34789999998878999999998888
Q ss_pred HHHHHHHHHhcCCc
Q psy7343 344 LADVEACLAQTGVA 357 (487)
Q Consensus 344 ~~da~~~l~~~Gad 357 (487)
+++..+.+.++|-+
T Consensus 216 p~~~~~~~~~~gg~ 229 (307)
T 3n9r_A 216 PDNVRKSYLDAGGD 229 (307)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred chHHHHHHHHhcCc
Confidence 88888888777643
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=92.03 E-value=0.25 Score=48.99 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=54.7
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+...+.++.+.+.|+|+|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+.-|=.+.+++.++ .++.|||
T Consensus 42 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~-~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gad 120 (314)
T 3qze_A 42 DWDSLAKLVDFHLQEGTNAIVAVGTTGESA-TLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGAD 120 (314)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSGGGTGG-GCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 445677888888899999999966554432 121111124455555544 6898865444445554443 3358999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++....+..|
T Consensus 121 avlv~~P~y~~~ 132 (314)
T 3qze_A 121 ACLLVTPYYNKP 132 (314)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEcCCCCCCC
Confidence 999998877665
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.63 Score=44.24 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=73.9
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh--cc--Cc--EEEE
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA--VQ--VP--VSCK 277 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~--~~--iP--V~vK 277 (487)
.++=+|+. ..++.....++.+.++ |+ ..++.|...| .+.+.+.++.+++. .+ .| +.++
T Consensus 58 v~lD~kl~-Dip~t~~~~~~~~~~~--------Ga-d~vTvH~~~g------~~~l~~~~~~~~~~~~~G~~~~~~lav~ 121 (246)
T 2yyu_A 58 VFLDLKLH-DIPNTVKQAMKGLARV--------GA-DLVNVHAAGG------RRMMEAAIEGLDAGTPSGRMRPRCIAVT 121 (246)
T ss_dssp EEEEEEEC-SCHHHHHHHHHHHHHT--------TC-SEEEEEGGGC------HHHHHHHHHHHHHHSCSSSCCCEEEEES
T ss_pred EEEEeecc-cchHHHHHHHHHHHhc--------CC-CEEEEECCCC------HHHHHHHHHHHHhhcccCCcCCCEEEEE
Confidence 44556675 5566655555555454 33 4455555433 33455666666652 23 34 2233
Q ss_pred eeccc---cc-------ccHHHHHHH----HHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCC
Q psy7343 278 IRIYQ---DV-------NKTVEYARM----LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPVIANGNIQ 342 (487)
Q Consensus 278 iR~~~---d~-------~~~~e~a~~----le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~ 342 (487)
..... +. .+..+.... ..+.|.++++.. ..+ ++++++..+ .+++..|||+
T Consensus 122 ~~Ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~--------------~~e-i~~lr~~~~~~~i~V~gGI~ 186 (246)
T 2yyu_A 122 QLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCS--------------ANE-AAFIKERCGASFLAVTPGIR 186 (246)
T ss_dssp SCTTCCHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCCEEECC--------------HHH-HHHHHHHHCTTSEEEECCCC
T ss_pred eCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCEEEeC--------------HHH-HHHHHHhcCCCCEEEeCCcC
Confidence 21111 11 111222222 245788886541 134 667776653 5588999997
Q ss_pred CH-H---------HHHHHHHhcCCcEEEeccccccCcc
Q psy7343 343 CL-A---------DVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 343 s~-~---------da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.. . .+.+++ +.|+|.+.+||+++..++
T Consensus 187 ~~g~~~~dq~rv~t~~~a~-~aGad~iVvGr~I~~a~d 223 (246)
T 2yyu_A 187 FADDAAHDQVRVVTPRKAR-ALGSDYIVIGRSLTRAAD 223 (246)
T ss_dssp CCC-------CCCCHHHHH-HHTCSEEEECHHHHTSSS
T ss_pred CCCCCcccccccCCHHHHH-HcCCCEEEECHhhcCCCC
Confidence 42 1 355666 689999999999887543
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=1.7 Score=43.79 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 78 D~~al~~lv~~li~~--------Gv-~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~-~st~eai~la 147 (360)
T 4dpp_A 78 DLEAYDDLVNIQIQN--------GA-EGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGS-NSTREAIHAT 147 (360)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCC-CCHHHHHHHH
Confidence 667777777765554 44 4455566667655445555566776666654 5899986511 2456788889
Q ss_pred HHHHHcCCcEEEEE
Q psy7343 292 RMLERAGCQLLAVH 305 (487)
Q Consensus 292 ~~le~~G~d~I~Vh 305 (487)
+.+++.|+|++++.
T Consensus 148 ~~A~~~Gadavlvv 161 (360)
T 4dpp_A 148 EQGFAVGMHAALHI 161 (360)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred HHHHHcCCCEEEEc
Confidence 99999999999994
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.53 Score=43.94 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=62.9
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
..|++.=+|.. +.++..+.++.+.+.|++.|.+.-+ .....+.++++++.+.-.+++.|-+.+.+++...
T Consensus 15 ~~~~i~v~r~~-~~~~~~~~~~al~~gGv~~iel~~k---------~~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A 84 (214)
T 1wbh_A 15 TGPVVPVIVVK-KLEHAVPMAKALVAGGVRVLNVTLR---------TECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEV 84 (214)
T ss_dssp SCSEEEEECCS-SGGGHHHHHHHHHHTTCCEEEEESC---------STTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHH
T ss_pred HCCEEEEEECC-CHHHHHHHHHHHHHcCCCEEEEeCC---------ChhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHH
Confidence 34676666553 6678899999999999999999322 2233578888888875556777889999999999
Q ss_pred HHhcCCcEEEec
Q psy7343 351 LAQTGVAGVMTA 362 (487)
Q Consensus 351 l~~~Gad~VmiG 362 (487)
+ +.|||+|..|
T Consensus 85 ~-~aGAd~v~~p 95 (214)
T 1wbh_A 85 T-EAGAQFAISP 95 (214)
T ss_dssp H-HHTCSCEEES
T ss_pred H-HcCCCEEEcC
Confidence 9 7899999988
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=1.2 Score=41.25 Aligned_cols=130 Identities=16% Similarity=0.157 Sum_probs=77.6
Q ss_pred CeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccc
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQD 283 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d 283 (487)
++++-+.-.+.++..+.++.++...|.+|+.+ |. +... | + ++++++++.. +.|+..-+-+. +
T Consensus 8 ~lilalD~~~~~~~~~~~~~~~~~vd~ie~g~--~~-~~~~---G------~----~~i~~lr~~~~~~~i~ld~~l~-d 70 (218)
T 3jr2_A 8 MIQIALDQTNLTDAVAVASNVASYVDVIEVGT--IL-AFAE---G------M----KAVSTLRHNHPNHILVCDMKTT-D 70 (218)
T ss_dssp EEEEEECCSSHHHHHHHHHHHGGGCSEEEECH--HH-HHHH---T------T----HHHHHHHHHCTTSEEEEEEEEC-S
T ss_pred CeEEEeCCCCHHHHHHHHHHhcCCceEEEeCc--HH-HHhc---C------H----HHHHHHHHhCCCCcEEEEEeec-c
Confidence 45555555677888888777755578888753 21 1111 1 2 3555666663 55665543332 2
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH-HHHHHHHhhCCCcEEE-cCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW-EHITAVRKALTIPVIA-NGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~-~~i~~i~~~~~iPVi~-nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
....+++.+.++|+|+|++|+-... ... +.++.+++ .+++.+. .=++.|.+++.++. +.|+|.+.+
T Consensus 71 --~p~~~~~~~~~aGad~i~vh~~~~~--------~~~~~~~~~~~~-~g~~~~~d~l~~~T~~~~~~~~-~~g~d~v~~ 138 (218)
T 3jr2_A 71 --GGAILSRMAFEAGADWITVSAAAHI--------ATIAACKKVADE-LNGEIQIEIYGNWTMQDAKAWV-DLGITQAIY 138 (218)
T ss_dssp --CHHHHHHHHHHHTCSEEEEETTSCH--------HHHHHHHHHHHH-HTCEEEEECCSSCCHHHHHHHH-HTTCCEEEE
T ss_pred --cHHHHHHHHHhcCCCEEEEecCCCH--------HHHHHHHHHHHH-hCCccceeeeecCCHHHHHHHH-HcCccceee
Confidence 3445778899999999999865311 111 33444444 3565543 33446788888887 569998776
Q ss_pred cc
Q psy7343 362 AE 363 (487)
Q Consensus 362 GR 363 (487)
..
T Consensus 139 ~~ 140 (218)
T 3jr2_A 139 HR 140 (218)
T ss_dssp EC
T ss_pred ee
Confidence 43
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.8 Score=44.95 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHhhhccCcEEEE----eeccc------ccccHHHHHHHHHHcCCc----EEEEEccccCCCCCCCCCCCH
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCK----IRIYQ------DVNKTVEYARMLERAGCQ----LLAVHGRTVDQRGMNTGLASW 321 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vK----iR~~~------d~~~~~e~a~~le~~G~d----~I~VhgRt~~~~g~~~g~~~~ 321 (487)
.+.+.+++++.. ..++|+.+- -|.+. |.+.....++...+.|+| .|-+ . |.
T Consensus 162 l~~la~vv~ea~-~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaELGADs~~tivK~-~--------y~----- 226 (307)
T 3fok_A 162 LEATAHAVNEAA-AAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGLGNDSSYTWMKL-P--------VV----- 226 (307)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTCSSCCSSEEEEE-E--------CC-----
T ss_pred HHHHHHHHHHHH-HcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHhCCCcCCCEEEe-C--------Cc-----
Confidence 445555555544 348998774 22221 233456677888899999 8877 1 32
Q ss_pred HHHHHHHhhCCCcEEEcCCCC--CHHHHHHHHH---h-cCCcEEEeccccccC
Q psy7343 322 EHITAVRKALTIPVIANGNIQ--CLADVEACLA---Q-TGVAGVMTAEGNLYN 368 (487)
Q Consensus 322 ~~i~~i~~~~~iPVi~nGgI~--s~~da~~~l~---~-~Gad~VmiGRa~l~~ 368 (487)
+.++++.+...+||+..||=. +.+++.+..+ + .|+.|+.+||-++..
T Consensus 227 e~f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ~ 279 (307)
T 3fok_A 227 EEMERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLYP 279 (307)
T ss_dssp TTHHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSSC
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhccC
Confidence 346888888999998877766 4566655543 4 699999999987763
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=91.81 E-value=0.29 Score=47.94 Aligned_cols=86 Identities=15% Similarity=0.139 Sum_probs=54.0
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+.=|=.+.+++.++. ++.|||
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~-~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 98 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGTTGESA-TLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV 98 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchh-hCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCC
Confidence 445677888888899999999966554432 121111224455555544 68998643334445454443 247999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++....+..|
T Consensus 99 avlv~~P~y~~~ 110 (292)
T 2ojp_A 99 GCLTVTPYYNRP 110 (292)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 999998877665
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=91.76 E-value=0.6 Score=45.24 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhccCcEEEEeecc-cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC-----------------C
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRIY-QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL-----------------A 319 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~~-~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~-----------------~ 319 (487)
.+.+..+.+++.-...++.=+-.| ++.+.+.++++.+++.|+|.|.+ |--..+ +...|+ .
T Consensus 6 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iEl-GiPfSD-P~aDGpvIq~a~~rAL~~G~~~~~ 83 (271)
T 3nav_A 6 RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALEL-GMPFSD-PLADGPTIQGANLRALAAKTTPDI 83 (271)
T ss_dssp HHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEE-ECCCCC-GGGCCSHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE-CCCCCC-CCCCCHHHHHHHHHHHHcCCCHHH
Confidence 355556666554333444444333 35678999999999999999999 532110 111121 1
Q ss_pred CHHHHHHHHhh-CCCcEEEcCCCC-----CHHHHHHHHHhcCCcEEEecc
Q psy7343 320 SWEHITAVRKA-LTIPVIANGNIQ-----CLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 320 ~~~~i~~i~~~-~~iPVi~nGgI~-----s~~da~~~l~~~Gad~VmiGR 363 (487)
.++.++++++. .++|++.-|-.+ ..+...+...+.|+|++.+.-
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipD 133 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIAD 133 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETT
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECC
Confidence 24788888887 799998865322 235555555579999999853
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.3 Score=47.75 Aligned_cols=86 Identities=23% Similarity=0.207 Sum_probs=54.6
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+.=|=.+.+++.++ .++.|||
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~-~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gad 98 (291)
T 3a5f_A 20 DFDKLSELIEWHIKSKTDAIIVCGTTGEAT-TMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVD 98 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGG-GSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCC
Confidence 555677888888899999999966655432 121111124455555544 6899864333444444433 3457999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++....+..|
T Consensus 99 avlv~~P~y~~~ 110 (291)
T 3a5f_A 99 GLLVITPYYNKT 110 (291)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEcCCCCCCC
Confidence 999998887666
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.75 Score=45.59 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=44.2
Q ss_pred cCChHHHHHHHHHHhhhc-cCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 253 QDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.-..+.+...++.|.+.+ ++||++-+..|. +..+..+.++.++++|+++|.|-+..
T Consensus 82 ~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iED~~ 139 (318)
T 1zlp_A 82 LLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELISAGAKGVFLEDQV 139 (318)
T ss_dssp CSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEEECBC
T ss_pred CCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 345777778888888888 999999887653 44567778888999999999996654
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=91.75 E-value=0.29 Score=47.88 Aligned_cols=86 Identities=13% Similarity=0.124 Sum_probs=54.5
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+.....++.+.+.|+++|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+.=|=.+.+++.++ .++.|+|
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~-~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 98 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTNSIVAVGTTGEAS-TLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGAD 98 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECccccccc-cCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 455677888888899999999966554432 111111124455555544 6899865444445555443 3357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++....+..|
T Consensus 99 avlv~~P~y~~~ 110 (291)
T 3tak_A 99 AALLVTPYYNKP 110 (291)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEcCCCCCCC
Confidence 999998777665
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=91.72 E-value=0.3 Score=48.14 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=53.7
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEE-cCCCCCHHHHHHH---HHhcCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA-NGNIQCLADVEAC---LAQTGV 356 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~-nGgI~s~~da~~~---l~~~Ga 356 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+ .|+..+.+ +.++ .++.||
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~-~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~-ai~la~~A~~~Ga 107 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGGSTGEAF-VQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAE-SQQLAASAKRYGF 107 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHH-HHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccChh-hCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHH-HHHHHHHHHhCCC
Confidence 445677888888899999999966554432 121111124455555544 689985 45544444 4333 345799
Q ss_pred cEEEeccccccCc
Q psy7343 357 AGVMTAEGNLYNP 369 (487)
Q Consensus 357 d~VmiGRa~l~~P 369 (487)
|++++....+..|
T Consensus 108 davlv~~P~y~~~ 120 (303)
T 2wkj_A 108 DAVSAVTPFYYPF 120 (303)
T ss_dssp SEEEEECCCSSCC
T ss_pred CEEEecCCCCCCC
Confidence 9999998877655
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.31 Score=47.76 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=53.8
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEE-cCCCCCHHHHHHH---HHhcCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA-NGNIQCLADVEAC---LAQTGV 356 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~-nGgI~s~~da~~~---l~~~Ga 356 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+ .|+..+.+ +.++ .++.||
T Consensus 22 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~-~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~-ai~la~~A~~~Ga 99 (294)
T 3b4u_A 22 DIDAMIAHARRCLSNGCDSVTLFGTTGEGC-SVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIED-AADQSAEALNAGA 99 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGG-GSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHH-HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHH-HHHHHHHHHhcCC
Confidence 445677888888899999999966554432 121111225555566655 589875 45555444 4333 335799
Q ss_pred cEEEeccccccC
Q psy7343 357 AGVMTAEGNLYN 368 (487)
Q Consensus 357 d~VmiGRa~l~~ 368 (487)
|++++....+..
T Consensus 100 davlv~~P~y~~ 111 (294)
T 3b4u_A 100 RNILLAPPSYFK 111 (294)
T ss_dssp SEEEECCCCSSC
T ss_pred CEEEEcCCcCCC
Confidence 999999877655
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=91.61 E-value=2.3 Score=42.82 Aligned_cols=120 Identities=14% Similarity=0.109 Sum_probs=78.7
Q ss_pred CHHHHHHHH-HhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa-~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
+.+++.+.+ +.+++.|..+-+..|. +++.-.+.++++++++ ++.+.+...-+++.++..++
T Consensus 144 ~~~~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~~~~a~~~ 207 (372)
T 3cyj_A 144 PLRRLQEQLGGWAAAGIPRVKMKVGR----------------EPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYW 207 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCS----------------SGGGHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 445555444 4445556655554331 2333345566677665 34454443334666778888
Q ss_pred HHHHHHc-CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC--CcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 291 ARMLERA-GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT--IPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 291 a~~le~~-G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~--iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.++++ ++..|-= + . ...+++..+++++.++ +||.+.-.+.+..++.++ ...+|.+++
T Consensus 208 ~~~l~~~~~i~~iEq--------P-~-~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~--~~a~d~i~i 269 (372)
T 3cyj_A 208 AGAFAREAGISYLEE--------P-V-SSEDREGLRLLRDRGPGGVAIAAGEYEWTLPQLHDL--AGCVDILQA 269 (372)
T ss_dssp HHHHHHHHCCCEEEC--------S-S-CTTCHHHHHHHHHHSCTTCEEEECTTCCSHHHHHHH--HTTCSEEEE
T ss_pred HHHHHhhcCCcEEEC--------C-C-CcccHHHHHHHHHhCCCCCCEECCCCccCHHHHHHH--hCCCCEEec
Confidence 9999998 8886631 1 1 2347899999999887 799998899999998887 567888875
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.53 E-value=1 Score=44.19 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=71.3
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-CCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~~~~~~i~~i 327 (487)
|+....+.+++.+ +. .++.||.+|--..-+.++....++.+.+.|.+-|++.=|+.. . .|.. ..|+..+..+
T Consensus 138 gA~~~~n~~LLr~----va-~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~-y-~~~~~~vdl~~i~~l 210 (298)
T 3fs2_A 138 PAFLCRQTDLLIA----AA-RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVS-F-GYNTLVSDMRALPIM 210 (298)
T ss_dssp CGGGTTCHHHHHH----HH-HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEE-C-SSSCEECCTTHHHHH
T ss_pred CccccCCHHHHHH----HH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC-C-CCCCCccCHHHHHHH
Confidence 4444567776655 32 468999999755446678889999999999987877445432 1 1332 2578888889
Q ss_pred HhhCCCcEEEc---------------CCCCCH--HHHHHHHHhcCCcEEEecccc
Q psy7343 328 RKALTIPVIAN---------------GNIQCL--ADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 328 ~~~~~iPVi~n---------------GgI~s~--~da~~~l~~~Gad~VmiGRa~ 365 (487)
++ .+.||++. ||.+.. .-+.... ..||||++|=+-+
T Consensus 211 k~-~~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAv-AlGAdGl~IE~H~ 263 (298)
T 3fs2_A 211 AG-LGAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAV-AVGVAGFFIETHE 263 (298)
T ss_dssp HT-TTSCEEEEHHHHTCCCC--------CGGGHHHHHHHHH-HHCCSEEEEEEES
T ss_pred HH-cCCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHH-HcCCCEEEEEecC
Confidence 98 89999983 232221 2233444 5799999987643
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=0.31 Score=47.68 Aligned_cols=87 Identities=15% Similarity=0.045 Sum_probs=54.5
Q ss_pred ccccHHHHHHHHHH-cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCC
Q psy7343 283 DVNKTVEYARMLER-AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGV 356 (487)
Q Consensus 283 d~~~~~e~a~~le~-~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Ga 356 (487)
|.+...+.++.+.+ .|+|+|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+.=|=.+.+++.++ .++.|+
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~GttGE~~-~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga 100 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENF-MLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 100 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGG-GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCccccchh-hCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCC
Confidence 44567788888889 9999999966655432 121111224455555544 6999864333344444433 335799
Q ss_pred cEEEeccccccCcc
Q psy7343 357 AGVMTAEGNLYNPA 370 (487)
Q Consensus 357 d~VmiGRa~l~~P~ 370 (487)
|++++....+..|.
T Consensus 101 davlv~~P~y~~~~ 114 (293)
T 1f6k_A 101 DCLSAVTPFYYKFS 114 (293)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988776653
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=91.48 E-value=1.6 Score=41.08 Aligned_cols=87 Identities=15% Similarity=0.230 Sum_probs=52.6
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
.++++-+.-.+.++..+.++.+....+.+.++.+. . .. +| ++.+. .+++..+.+|+.-..+. |
T Consensus 13 ~~lilAlD~~~~~~a~~~v~~~~~~v~~~Kvg~~l--f-~~---~G------~~~v~----~l~~~~g~~v~lD~Kl~-D 75 (228)
T 3m47_A 13 NRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPL--V-LS---EG------MDIIA----EFRKRFGCRIIADFKVA-D 75 (228)
T ss_dssp GGEEEECCCCSHHHHHHHHHTTTTTCSEEEEEHHH--H-HH---HC------THHHH----HHHHHHCCEEEEEEEEC-S
T ss_pred CCeEEEeCCCCHHHHHHHHHHcCCcccEEEEcHHH--H-Hh---cC------HHHHH----HHHhcCCCeEEEEEeec-c
Confidence 35666665566666677777666556777775433 1 11 12 34433 45443244555544344 5
Q ss_pred cc-cHHHHHHHHHHcCCcEEEEEcc
Q psy7343 284 VN-KTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 284 ~~-~~~e~a~~le~~G~d~I~VhgR 307 (487)
+. +...+++.+.+.|+|.|+||+-
T Consensus 76 ipnTv~~~~~~~~~~gad~vtvh~~ 100 (228)
T 3m47_A 76 IPETNEKICRATFKAGADAIIVHGF 100 (228)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred cHhHHHHHHHHHHhCCCCEEEEecc
Confidence 54 4566888889999999999964
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=91.43 E-value=1.4 Score=42.88 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=56.7
Q ss_pred HHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc-cc-ccHHH----HHH
Q psy7343 220 EAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DV-NKTVE----YAR 292 (487)
Q Consensus 220 ~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~-~~~~e----~a~ 292 (487)
-.|++++++ +|.| +- |--...+..|. -..+.-..+......++|++.++.|+++ ..++. +. .+..+ ..+
T Consensus 45 ~sA~l~e~aG~d~i-lv-GdSl~~~~lG~-~dt~~vTldemi~h~~aV~r~~~~~~vv-aD~pfgsy~~s~~~a~~na~r 120 (281)
T 1oy0_A 45 STARIFDEAGIPVL-LV-GDSAANVVYGY-DTTVPISIDELIPLVRGVVRGAPHALVV-ADLPFGSYEAGPTAALAAATR 120 (281)
T ss_dssp HHHHHHHTTTCCEE-EE-CTTHHHHTTCC-SSSSSCCGGGTHHHHHHHHHHCTTSEEE-EECCTTSSTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEE-EE-CHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHhcCCCCeEE-EECCCCcccCCHHHHHHHHHH
Confidence 346667676 6766 22 32122233332 2222334566666677788888777665 44432 21 13333 466
Q ss_pred HHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE
Q psy7343 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI 336 (487)
Q Consensus 293 ~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi 336 (487)
.++++|+++|.+-|. ....+.|+.+.+. +|||+
T Consensus 121 l~~eaGa~aVklEdg----------~e~~~~I~al~~a-gIpV~ 153 (281)
T 1oy0_A 121 FLKDGGAHAVKLEGG----------ERVAEQIACLTAA-GIPVM 153 (281)
T ss_dssp HHHTTCCSEEEEEBS----------GGGHHHHHHHHHH-TCCEE
T ss_pred HHHHhCCeEEEECCc----------HHHHHHHHHHHHC-CCCEE
Confidence 777799999999442 1123556666543 78887
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=1.1 Score=43.37 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=57.7
Q ss_pred HHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCc-EEEEeeccc---ccccHHHHHHHHH
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP-VSCKIRIYQ---DVNKTVEYARMLE 295 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iP-V~vKiR~~~---d~~~~~e~a~~le 295 (487)
.|++++++ +|.| +- |--...+..|. -..+.-..+......++|++.++.| |++-+-.+. +.++..+-+..+.
T Consensus 29 sA~l~e~aG~d~i-lv-GdSl~~~~lG~-~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~rl~ 105 (275)
T 1o66_A 29 FAALMDDAGVEML-LV-GDSLGMAVQGR-KSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELM 105 (275)
T ss_dssp HHHHHHHTTCCEE-EE-CTTHHHHTTCC-SSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEE-EE-CHHHHHHHcCC-CCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHHHHHHHH
Confidence 45666666 6666 22 32122233332 2223345677777778888888765 444443321 2334445556777
Q ss_pred HcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE
Q psy7343 296 RAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI 336 (487)
Q Consensus 296 ~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi 336 (487)
++|+++|.+-+. ....+.|+.+.+ .+|||+
T Consensus 106 kaGa~aVklEdg----------~e~~~~I~al~~-agIpV~ 135 (275)
T 1o66_A 106 AAGAHMVKLEGG----------VWMAETTEFLQM-RGIPVC 135 (275)
T ss_dssp HTTCSEEEEECS----------GGGHHHHHHHHH-TTCCEE
T ss_pred HcCCcEEEECCc----------HHHHHHHHHHHH-cCCCeE
Confidence 899999999442 112355666554 488987
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.26 Score=48.91 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=55.0
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+...+.++.+.+.|+|+|.+-|-|.+.. .++-.-..+.++.+.+.+ ++|||+.=|=.+.+++.++ .++.|||
T Consensus 43 D~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~-~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 121 (315)
T 3na8_A 43 DLPALGRSIERLIDGGVHAIAPLGSTGEGA-YLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAE 121 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGG-GSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 445678888888899999999966554432 121111124555555544 6898865443445554443 3357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++....+..|
T Consensus 122 avlv~~P~y~~~ 133 (315)
T 3na8_A 122 AVMVLPISYWKL 133 (315)
T ss_dssp EEEECCCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 999998877665
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=91.39 E-value=0.65 Score=45.70 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHhhhc-cCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEccccCCC-CCCCCCC--CH-HHHHHHH
Q psy7343 255 DWPLLTNLVSSLRQAV-QVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRTVDQR-GMNTGLA--SW-EHITAVR 328 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~-~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~~--~~-~~i~~i~ 328 (487)
.++.+...++.|.+.. ++||++-+..|. +..+..+.++.++++|+++|.|-+.....+ |...|.. .. +.+.+|+
T Consensus 63 t~~em~~~~~~I~~~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~ 142 (302)
T 3fa4_A 63 TLNDMRANAEMISNISPSTPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIR 142 (302)
T ss_dssp CHHHHHHHHHHHHTTSTTSCEEEECTTTTSSHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHH
Confidence 4566666667777664 899999987763 344567778889999999999966543211 1122221 22 4444443
Q ss_pred hh------CCCcEEEcCCCCCH-----HHHHHH---HHhcCCcEEEe
Q psy7343 329 KA------LTIPVIANGNIQCL-----ADVEAC---LAQTGVAGVMT 361 (487)
Q Consensus 329 ~~------~~iPVi~nGgI~s~-----~da~~~---l~~~Gad~Vmi 361 (487)
.. .+.+++.+....+. +++.+- ..+.|||++.+
T Consensus 143 Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi 189 (302)
T 3fa4_A 143 AAVQARQRIGSDIVVIARTDSLQTHGYEESVARLRAARDAGADVGFL 189 (302)
T ss_dssp HHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHhcCCCEEEEEEecccccCCHHHHHHHHHHHHHcCCCEEee
Confidence 32 23444544444433 333221 22579999998
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=91.39 E-value=3.4 Score=38.66 Aligned_cols=140 Identities=14% Similarity=0.228 Sum_probs=90.6
Q ss_pred CCCeeeeec---c---CCHHHHHHHHH---hhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccC
Q psy7343 203 DRPLIIQFC---G---NDSKNLTEAAK---LAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV 272 (487)
Q Consensus 203 ~~Pv~Vqi~---g---~d~~~~~~aa~---~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i 272 (487)
+.||-|=|| | .+.+++..+.+ .+.+. +|+|-+ || .+..| .-|.+...+++++.. +.
T Consensus 54 ~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~--G~---Lt~dg------~iD~~~~~~Li~~a~---~~ 119 (224)
T 2bdq_A 54 GISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVL--GI---LTSNN------HIDTEAIEQLLPATQ---GL 119 (224)
T ss_dssp TCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEE--CC---BCTTS------SBCHHHHHHHHHHHT---TC
T ss_pred CCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE--ee---ECCCC------CcCHHHHHHHHHHhC---CC
Confidence 578888876 2 45666655433 44444 666655 55 12222 247888898887643 67
Q ss_pred cEEEEeeccccc--ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHH
Q psy7343 273 PVSCKIRIYQDV--NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVE 348 (487)
Q Consensus 273 PV~vKiR~~~d~--~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~ 348 (487)
+++.- |..+.. .+..+..+.+.+.|++.|.-||-.... .-....+.++++.+.. ++-|++.|||+ .+.+.
T Consensus 120 ~vTFH-RAFD~~~~~d~~~ale~L~~lGv~rILTSG~~~~~----~a~~g~~~L~~Lv~~a~~ri~Im~GgGV~-~~Ni~ 193 (224)
T 2bdq_A 120 PLVFH-MAFDVIPKSDQKKSIDQLVALGFTRILLHGSSNGE----PIIENIKHIKALVEYANNRIEIMVGGGVT-AENYQ 193 (224)
T ss_dssp CEEEC-GGGGGSCTTTHHHHHHHHHHTTCCEEEECSCSSCC----CGGGGHHHHHHHHHHHTTSSEEEECSSCC-TTTHH
T ss_pred eEEEE-CchhccCCcCHHHHHHHHHHcCCCEEECCCCCCCC----cHHHHHHHHHHHHHhhCCCeEEEeCCCCC-HHHHH
Confidence 77775 444344 677888999999999999876643221 0112356666665432 67788888886 46777
Q ss_pred HHHHhcCCcEEEec
Q psy7343 349 ACLAQTGVAGVMTA 362 (487)
Q Consensus 349 ~~l~~~Gad~VmiG 362 (487)
++++.+|++.+-..
T Consensus 194 ~l~~~tGv~e~H~s 207 (224)
T 2bdq_A 194 YICQETGVKQAHGT 207 (224)
T ss_dssp HHHHHHTCCEEEET
T ss_pred HHHHhhCCCEEccc
Confidence 88878999988854
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=4.3 Score=38.81 Aligned_cols=138 Identities=17% Similarity=0.218 Sum_probs=84.4
Q ss_pred CCC-eeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEee
Q psy7343 203 DRP-LIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIR 279 (487)
Q Consensus 203 ~~P-v~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR 279 (487)
+.| +.|-+.+.+.+++.+-++.+... +|.||+=+.. . .+ ..+.+.+.+.+..+++.+ ++|+++.+|
T Consensus 18 g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~-l----~~------~~~~~~v~~~l~~lr~~~~~lPiI~T~R 86 (258)
T 4h3d_A 18 GRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDF-F----EN------VENIKEVKEVLYELRSYIHDIPLLFTFR 86 (258)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGG-C----TT------TTCHHHHHHHHHHHHHHCTTSCEEEECC
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeecc-c----cc------cCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 455 55668888888887766666554 8999987654 1 11 136778888888888876 699999999
Q ss_pred ccc-------ccccHHHHHHHHHHcC-CcEEEEEccccCCCCCCCCCCCHHHHHHHH---hhCCCcEEEcC----CCCCH
Q psy7343 280 IYQ-------DVNKTVEYARMLERAG-CQLLAVHGRTVDQRGMNTGLASWEHITAVR---KALTIPVIANG----NIQCL 344 (487)
Q Consensus 280 ~~~-------d~~~~~e~a~~le~~G-~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~---~~~~iPVi~nG----gI~s~ 344 (487)
..+ +.+...++.+.+.+.| +|+|.|--.. .-+.++++. +.-+..||++- +--+.
T Consensus 87 t~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~-----------~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~ 155 (258)
T 4h3d_A 87 SVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFM-----------GDEVIDEVVNFAHKKEVKVIISNHDFNKTPKK 155 (258)
T ss_dssp CGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGGG-----------CHHHHHHHHHHHHHTTCEEEEEEEESSCCCCH
T ss_pred chhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhhhc-----------cHHHHHHHHHHHHhCCCEEEEEEecCCCCCCH
Confidence 732 2234555556666666 8999983211 112333332 23466677642 33344
Q ss_pred HHHHHHH---HhcCCcEEEec
Q psy7343 345 ADVEACL---AQTGVAGVMTA 362 (487)
Q Consensus 345 ~da~~~l---~~~Gad~VmiG 362 (487)
+++.+.+ ...|||-+=++
T Consensus 156 ~el~~~~~~~~~~gaDIvKia 176 (258)
T 4h3d_A 156 EEIVSRLCRMQELGADLPKIA 176 (258)
T ss_dssp HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEE
Confidence 5554443 24677766544
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.26 Score=48.81 Aligned_cols=86 Identities=14% Similarity=0.155 Sum_probs=54.7
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+...+.++.+.+.|+|+|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+.=|=.+.+++.++ .++.|||
T Consensus 41 D~~~l~~li~~li~~Gv~Gl~v~GtTGE~~-~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad 119 (315)
T 3si9_A 41 DEKAFCNFVEWQITQGINGVSPVGTTGESP-TLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGAD 119 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCcc-ccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 455678888888899999999966554432 121111124455555544 6898865444445554443 3358999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++....+..|
T Consensus 120 avlv~~P~y~~~ 131 (315)
T 3si9_A 120 AVLVVTPYYNRP 131 (315)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 999998877665
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=91.25 E-value=4.5 Score=39.69 Aligned_cols=67 Identities=6% Similarity=0.053 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHH----------HHHHHHHhcCC
Q psy7343 288 VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPVIANGNIQCLA----------DVEACLAQTGV 356 (487)
Q Consensus 288 ~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~----------da~~~l~~~Ga 356 (487)
...++...+.|+++|..++. + ++.+++.++ -.++..+||+-.. .+.+++ ..|+
T Consensus 161 ~~lA~~a~~~G~dGvV~s~~--------------E-~~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~-~aGA 224 (303)
T 3ru6_A 161 INFSKISYENGLDGMVCSVF--------------E-SKKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMAR-ENLS 224 (303)
T ss_dssp HHHHHHHHHTTCSEEECCTT--------------T-HHHHHHHSCTTSEEEECCCCTTC--------CCSHHHHH-HTTC
T ss_pred HHHHHHHHHcCCCEEEECHH--------------H-HHHHHHhCCCccEEECCCcCcccCCcccccccCCHHHHH-HcCC
Confidence 45677778899999876211 1 456777763 4577788887221 244556 6899
Q ss_pred cEEEeccccccCcc
Q psy7343 357 AGVMTAEGNLYNPA 370 (487)
Q Consensus 357 d~VmiGRa~l~~P~ 370 (487)
|.+.+||++...++
T Consensus 225 d~iVvGr~I~~a~d 238 (303)
T 3ru6_A 225 DYIVVGRPIYKNEN 238 (303)
T ss_dssp SEEEECHHHHTSSC
T ss_pred CEEEEChHHhCCCC
Confidence 99999999887544
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=91.23 E-value=1.2 Score=43.13 Aligned_cols=95 Identities=17% Similarity=0.244 Sum_probs=61.2
Q ss_pred CHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHH
Q psy7343 214 DSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 214 d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
+.+...+.|+ ++++..|.||||++.+. ...++.+..+++++++.+++|+++-. .+ .+.++
T Consensus 32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~~------------~eE~~rv~~vi~~l~~~~~~pisIDT------~~-~~v~~ 92 (271)
T 2yci_X 32 DPRPIQEWARRQAEKGAHYLDVNTGPTA------------DDPVRVMEWLVKTIQEVVDLPCCLDS------TN-PDAIE 92 (271)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCSCS------------SCHHHHHHHHHHHHHHHCCCCEEEEC------SC-HHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCcCc------------hhHHHHHHHHHHHHHHhCCCeEEEeC------CC-HHHHH
Confidence 4455555444 55566999999976621 23588899999999988899999864 23 34444
Q ss_pred HHHHc--CCcEEE-EEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE
Q psy7343 293 MLERA--GCQLLA-VHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337 (487)
Q Consensus 293 ~le~~--G~d~I~-VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~ 337 (487)
...++ |++.|. |++- ...++.+..+.+..+.|+++
T Consensus 93 aal~a~~Ga~iINdvs~~----------~d~~~~~~~~~a~~~~~vv~ 130 (271)
T 2yci_X 93 AGLKVHRGHAMINSTSAD----------QWKMDIFFPMAKKYEAAIIG 130 (271)
T ss_dssp HHHHHCCSCCEEEEECSC----------HHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHhCCCCCEEEECCCC----------ccccHHHHHHHHHcCCCEEE
Confidence 44445 998886 5221 11234444555566888887
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=91.14 E-value=0.79 Score=44.30 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhhccCcEEEEeecc-cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC-----------------C
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRIY-QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL-----------------A 319 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~~-~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~-----------------~ 319 (487)
.+.+..+.+++.-...++.-+-.| ++.+.+.++++.+++.|+|.|.+ |--..+ +...|+ .
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iEl-giPfSD-P~aDGp~Iq~a~~~AL~~G~~~~~ 81 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALEL-GFPFSD-PLADGPVIQGANLRSLAAGTTSSD 81 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEE-ECCCSC-CTTCCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE-CCCCCC-CCCCCHHHHHHHHHHHHcCCCHHH
Confidence 345555556544333444443333 34578999999999999999999 521110 011111 1
Q ss_pred CHHHHHHHHhh-CCCcEEEcCCCC-----CHHHHHHHHHhcCCcEEEecc
Q psy7343 320 SWEHITAVRKA-LTIPVIANGNIQ-----CLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 320 ~~~~i~~i~~~-~~iPVi~nGgI~-----s~~da~~~l~~~Gad~VmiGR 363 (487)
.++.++++++. .++|++.-|-.+ ..+...+...+.|+|++.+.-
T Consensus 82 ~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~D 131 (267)
T 3vnd_A 82 CFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIAD 131 (267)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETT
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCC
Confidence 25788888887 899998865322 125555555578999999854
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.13 E-value=0.3 Score=48.74 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=54.2
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEE-cCCCCCHHHHHH--HHHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA-NGNIQCLADVEA--CLAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~-nGgI~s~~da~~--~l~~~Gad 357 (487)
|.+.....++.+.+.|+++|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+ .|+..+.+.++. ..++.|||
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~-~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad 131 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILGSTGIYM-YLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGAD 131 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 445677888888899999999966554432 121111224555555554 699985 565555444332 23457999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++....+..|
T Consensus 132 avlv~~P~Y~~~ 143 (332)
T 2r8w_A 132 ALLLAPVSYTPL 143 (332)
T ss_dssp EEEECCCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 999998877655
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.98 Score=43.49 Aligned_cols=107 Identities=11% Similarity=0.078 Sum_probs=61.3
Q ss_pred chhhhcChhHHHHHHhcCCCCCCeeeeeccC-CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccC--cc-ccc--cCCh
Q psy7343 183 AHQFIADKKLRQEILMSTPEDRPLIIQFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGH--YG-AYL--QDDW 256 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~-d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr--~G-~~l--~~d~ 256 (487)
++..+.+....+++- ..+.||.+|-... +.+++..++..+... |++.-...+-+ .. .+- .-|.
T Consensus 113 ga~~~~n~~ll~~~a---~~~kPV~lk~G~~~t~~e~~~Av~~i~~~--------Gn~~i~L~~RG~~~~~~y~~~~v~L 181 (262)
T 1zco_A 113 GARNSQNFELLKEVG---KVENPVLLKRGMGNTIQELLYSAEYIMAQ--------GNENVILCERGIRTFETATRFTLDI 181 (262)
T ss_dssp CGGGTTCHHHHHHHT---TSSSCEEEECCTTCCHHHHHHHHHHHHTT--------TCCCEEEEECCBCCSCCSSSSBCCT
T ss_pred CcccccCHHHHHHHH---hcCCcEEEecCCCCCHHHHHHHHHHHHHC--------CCCeEEEEECCCCCCCCcChhhcCH
Confidence 344455554444433 3578999998865 899999999888766 44332222211 00 111 1122
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccc-cHHHHHHHHHHcCCcEEEE
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVN-KTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~-~~~e~a~~le~~G~d~I~V 304 (487)
.. +..+++..+.||++.-.-..+.. -...+++.....|+++|+|
T Consensus 182 ~a----i~~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~i 226 (262)
T 1zco_A 182 SA----VPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMV 226 (262)
T ss_dssp TH----HHHHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEE
T ss_pred HH----HHHHHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEE
Confidence 22 33366666899877542221121 2236677778899999988
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.32 Score=48.81 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=54.2
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+.=|=.+.+++.++ .++.|||
T Consensus 50 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~-~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad 128 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDGLFFLGSGGEFS-QLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGAD 128 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 445677888888899999999966554432 111111124455555544 6899864333344444443 3357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++-...+..|
T Consensus 129 avlv~~P~Y~~~ 140 (343)
T 2v9d_A 129 GIVVINPYYWKV 140 (343)
T ss_dssp EEEEECCSSSCC
T ss_pred EEEECCCCCCCC
Confidence 999998877666
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=91.05 E-value=0.28 Score=48.14 Aligned_cols=85 Identities=20% Similarity=0.210 Sum_probs=54.2
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEE-cCCCCCHHHHHHH---HHhcCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA-NGNIQCLADVEAC---LAQTGV 356 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~-nGgI~s~~da~~~---l~~~Ga 356 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+ .|+..+ +++.++ .++.||
T Consensus 19 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~-~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t-~~ai~la~~A~~~Ga 96 (297)
T 2rfg_A 19 DEKALAGLVDWQIKHGAHGLVPVGTTGESP-TLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNP-VEAVRYAQHAQQAGA 96 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGG-GSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSH-HHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchh-hCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCH-HHHHHHHHHHHhcCC
Confidence 556678888889999999999966654432 121111124455555544 689875 455444 444433 345799
Q ss_pred cEEEeccccccCc
Q psy7343 357 AGVMTAEGNLYNP 369 (487)
Q Consensus 357 d~VmiGRa~l~~P 369 (487)
|++++....+..|
T Consensus 97 davlv~~P~y~~~ 109 (297)
T 2rfg_A 97 DAVLCVAGYYNRP 109 (297)
T ss_dssp SEEEECCCTTTCC
T ss_pred CEEEEcCCCCCCC
Confidence 9999998877655
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=91.05 E-value=1.4 Score=43.03 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=44.5
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.-..+.+...++.|.+.+++||++-+..|. +..+..+.++.++++|+++|.+-+..
T Consensus 57 ~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~ 113 (290)
T 2hjp_A 57 ILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKT 113 (290)
T ss_dssp CSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSHHHHHHHHHHHHHHTCSEEEEECBC
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEcCCC
Confidence 346777888888898899999999886652 44567778888999999999996654
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=90.98 E-value=0.75 Score=44.52 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccC---CCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVD---QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~---~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
...+-++..|++|+.+||+--|-.. ..|+.....+.+.|++|++.+++||++==.|....+++.+. ..|+|.|
T Consensus 19 ~~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~righ~~EAqile-a~GaD~I 94 (291)
T 3o07_A 19 VTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRIGHFVEAQIIE-ALEVDYI 94 (291)
T ss_dssp SSHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHHHHHH-HTTCSEE
T ss_pred CCHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH-HcCCCEE
Confidence 5577889999999999999533211 22233345688999999999999999977777777776655 7999988
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=90.96 E-value=1.7 Score=41.23 Aligned_cols=136 Identities=15% Similarity=0.147 Sum_probs=74.3
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-Cc-EE-EEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VP-VS-CKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iP-V~-vKiR 279 (487)
..++=+|+. ..++.....++.+.++ |+ ..++.|...| .+.+..+++.+++.-. .| ++ ++..
T Consensus 67 ~v~lD~kl~-Dip~t~~~~i~~~~~~--------Ga-d~vTvH~~~g------~~~l~~~~~~~~~~G~~~~~~l~v~~~ 130 (245)
T 1eix_A 67 DIFLDLKFH-DIPNTAAHAVAAAADL--------GV-WMVNVHASGG------ARMMTAAREALVPFGKDAPLLIAVTVL 130 (245)
T ss_dssp CEEEEEEEC-SCHHHHHHHHHHHHHH--------TC-SEEEEBGGGC------HHHHHHHHHTTGGGGGGCCEEEEECSC
T ss_pred cEEEEeecc-ccHHHHHHHHHHHHhC--------CC-CEEEEeccCC------HHHHHHHHHHHHHcCCCCCcEEEEEec
Confidence 345557775 5566655555555455 33 4455665433 2335566666554311 24 22 2221
Q ss_pred cccccc---------cHHHHHHH----HHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHH
Q psy7343 280 IYQDVN---------KTVEYARM----LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLA 345 (487)
Q Consensus 280 ~~~d~~---------~~~e~a~~----le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~ 345 (487)
...+.. +..+.... ..+.|.++++... ++ ++++++.. +.+++..|||+...
T Consensus 131 ts~~~~~l~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~--------------~e-i~~lr~~~~~~~i~v~gGI~~~g 195 (245)
T 1eix_A 131 TSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSA--------------QE-AVRFKQVFGQEFKLVTPGIRPQG 195 (245)
T ss_dssp TTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCG--------------GG-HHHHHHHHCSSSEEEECCBCCTT
T ss_pred CCCCHHHHHHhccCCCHHHHHHHHHHHHHHcCCCeEEeCH--------------HH-HHHHHHhcCCCCEEEECCcCCCC
Confidence 111100 11222222 3457888865511 24 56666655 46889999998431
Q ss_pred ----------HHHHHHHhcCCcEEEeccccccCcc
Q psy7343 346 ----------DVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 346 ----------da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.+.+++ +.|+|.+.+||+++..++
T Consensus 196 ~~~~dq~rv~t~~~a~-~aGad~iVvGr~I~~a~d 229 (245)
T 1eix_A 196 SEAGDQRRIMTPEQAL-SAGVDYMVIGRPVTQSVD 229 (245)
T ss_dssp CCCTTCCSCBCHHHHH-HTTCSEEEECHHHHTSSS
T ss_pred CCccchhccCCHHHHH-HcCCCEEEECHHHcCCCC
Confidence 356666 689999999999887643
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.95 Score=44.18 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=44.2
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.-..+.....++.|.+.+++||++-+..|. +..+..+.++.++++|+++|.|-+..
T Consensus 64 ~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~ 120 (287)
T 3b8i_A 64 LITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTL 120 (287)
T ss_dssp CSCHHHHHHHHHHHHTTCSSCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEECBC
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEcCCC
Confidence 346777888888888899999999886652 44566777888899999999996654
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=90.86 E-value=0.74 Score=45.34 Aligned_cols=85 Identities=20% Similarity=0.206 Sum_probs=53.9
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+...+.++.+.+.|+|+|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+.-|-.+.+++.++ .++.|||
T Consensus 33 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~-~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad 111 (307)
T 3s5o_A 33 DYGKLEENLHKLGTFPFRGFVVQGSNGEFP-FLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGAD 111 (307)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEESSGGGTGG-GSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchh-hCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 445677788888899999999966655432 122111225566666665 6898864343444444433 3358999
Q ss_pred EEEeccccccC
Q psy7343 358 GVMTAEGNLYN 368 (487)
Q Consensus 358 ~VmiGRa~l~~ 368 (487)
++++-...+..
T Consensus 112 avlv~~P~y~~ 122 (307)
T 3s5o_A 112 AAMVVTPCYYR 122 (307)
T ss_dssp EEEEECCCTTG
T ss_pred EEEEcCCCcCC
Confidence 99998776653
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=90.77 E-value=1.1 Score=44.91 Aligned_cols=112 Identities=8% Similarity=0.069 Sum_probs=75.4
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~ 328 (487)
|+.-+.|.+++.++- ..+.||+++.-+. +.+++..+++.+.+.|.+.+.+|+-+.... .....|+..+..++
T Consensus 131 ~S~~~~n~~LL~~va-----~~gkPviLstGma-t~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~--~~~~~nL~ai~~lk 202 (349)
T 2wqp_A 131 GSGECNNYPLIKLVA-----SFGKPIILSTGMN-SIESIKKSVEIIREAGVPYALLHCTNIYPT--PYEDVRLGGMNDLS 202 (349)
T ss_dssp CGGGTTCHHHHHHHH-----TTCSCEEEECTTC-CHHHHHHHHHHHHHHTCCEEEEECCCCSSC--CGGGCCTHHHHHHH
T ss_pred CcccccCHHHHHHHH-----hcCCeEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEeccCCCCC--ChhhcCHHHHHHHH
Confidence 333456888877643 2589999998554 667888888888899998888886432221 12335788999999
Q ss_pred hhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 329 KAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 329 ~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+.. ++||..++--....-+.... ..||+ +|=+-+--|..+
T Consensus 203 ~~f~~lpVg~sdHt~G~~~~~AAv-AlGA~--iIEkH~tld~a~ 243 (349)
T 2wqp_A 203 EAFPDAIIGLSDHTLDNYACLGAV-ALGGS--ILERHFTDRMDR 243 (349)
T ss_dssp HHCTTSEEEEECCSSSSHHHHHHH-HHTCC--EEEEEBCSCTTC
T ss_pred HHCCCCCEEeCCCCCcHHHHHHHH-HhCCC--EEEeCCCccccC
Confidence 999 99998764333344445555 57999 555554444443
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.79 Score=44.51 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=68.2
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEeeccc--ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH----HHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ--DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW----EHITA 326 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~--d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~ 326 (487)
.-..+.....++.|.+.+++||++-+..|. +..+..+.++.++++|+++|.+-+...... ...... +.|+.
T Consensus 58 ~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaagv~iED~~~~~~---k~l~~~~e~~~~I~a 134 (275)
T 2ze3_A 58 TLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATGLTP---TELYDLDSQLRRIEA 134 (275)
T ss_dssp SSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHHHHHHTTCSEEEEECBCSSSS---SCBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCC---CccCCHHHHHHHHHH
Confidence 345777777888888888999999887763 345677888889999999999965432110 111122 44444
Q ss_pred HHhh---CCCcEEEcCCCCC--------H-HHHHHHH------HhcCCcEEEec
Q psy7343 327 VRKA---LTIPVIANGNIQC--------L-ADVEACL------AQTGVAGVMTA 362 (487)
Q Consensus 327 i~~~---~~iPVi~nGgI~s--------~-~da~~~l------~~~Gad~VmiG 362 (487)
+++. .++|+..+|.... . +.+.+++ ++.|||++.+=
T Consensus 135 a~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e 188 (275)
T 2ze3_A 135 ARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVP 188 (275)
T ss_dssp HHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECT
T ss_pred HHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEEC
Confidence 4444 2677776665544 1 2233332 35799999873
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=90.61 E-value=0.41 Score=47.24 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=52.8
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEc-CCCCCHHHHHHH---HHhcCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIAN-GNIQCLADVEAC---LAQTGV 356 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~n-GgI~s~~da~~~---l~~~Ga 356 (487)
|.+...+.++.+.+.|+|+|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+. |+..+.+ +.++ .++.||
T Consensus 27 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~-~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~-ai~la~~A~~~Ga 104 (309)
T 3fkr_A 27 DLASQKRAVDFMIDAGSDGLCILANFSEQF-AITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQV-CAARSLRAQQLGA 104 (309)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSGGGTGG-GSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHH-HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccCcc-cCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHH-HHHHHHHHHHcCC
Confidence 455678888888899999999966554432 121111224555555554 6999965 5555444 4433 335799
Q ss_pred cEEEeccccc
Q psy7343 357 AGVMTAEGNL 366 (487)
Q Consensus 357 d~VmiGRa~l 366 (487)
|++++-...+
T Consensus 105 davlv~~Pyy 114 (309)
T 3fkr_A 105 AMVMAMPPYH 114 (309)
T ss_dssp SEEEECCSCB
T ss_pred CEEEEcCCCC
Confidence 9999998765
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=90.57 E-value=0.6 Score=46.14 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=56.1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCC-
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGV- 356 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Ga- 356 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+.-|=.+.+++.++. ++.|+
T Consensus 26 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~-~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~ 104 (311)
T 3h5d_A 26 NFDAIPALIEHLLAHHTDGILLAGTTAESP-TLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGF 104 (311)
T ss_dssp CTTHHHHHHHHHHHTTCCCEEESSTTTTGG-GSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCC
Confidence 556788889999999999999966554432 121111224555666665 68998754444555555443 34586
Q ss_pred cEEEeccccccCc
Q psy7343 357 AGVMTAEGNLYNP 369 (487)
Q Consensus 357 d~VmiGRa~l~~P 369 (487)
|++++....+..|
T Consensus 105 davlv~~P~y~~~ 117 (311)
T 3h5d_A 105 AAGLAIVPYYNKP 117 (311)
T ss_dssp SEEEEECCCSSCC
T ss_pred cEEEEcCCCCCCC
Confidence 9999998877665
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=1.3 Score=44.19 Aligned_cols=121 Identities=17% Similarity=0.274 Sum_probs=80.3
Q ss_pred eccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc-ccccHH
Q psy7343 210 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DVNKTV 288 (487)
Q Consensus 210 i~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~~~~~ 288 (487)
+...+++++.+.++...+.+..+-+..|. ..| .+.++++++..+..+.+-..-+| +..+..
T Consensus 130 ~~~~~~e~~~~~a~~~~~g~~~~K~Kvg~--------------~~d----~~~v~avR~~~~~~l~vDaN~~~t~~~~A~ 191 (338)
T 3ijl_A 130 IGIDTPDVVRAKTKECAGLFNILKVKLGR--------------DND----KEMIETIRSVTDLPIAVDANQGWKDRQYAL 191 (338)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSSEEEECSS--------------SCH----HHHHHHHHTTCCCCEEEECTTCCCCHHHHH
T ss_pred EeCCCHHHHHHHHHHHHhcccEEEEecCc--------------HHH----HHHHHHHHhhcCCcEEEECcCCCCCHHHHH
Confidence 34457888877666543245555554432 012 34566788877655555443356 467788
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
++++.+++.++..|- | + . ...+++..+++++.+++||.+.-.+.+..|+.+++ ..+|.++
T Consensus 192 ~~~~~l~~~~i~~iE-------e-P-~-~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~--~a~d~i~ 251 (338)
T 3ijl_A 192 DMIHWLKEKGIVMIE-------Q-P-M-PKEQLDDIAWVTQQSPLPVFADESLQRLGDVAALK--GAFTGIN 251 (338)
T ss_dssp HHHHHHHHTTEEEEE-------C-C-S-CTTCHHHHHHHHHTCSSCEEESTTCCSGGGTGGGB--TTBSEEE
T ss_pred HHHHHHhhCCCCEEE-------C-C-C-CCCcHHHHHHHHhcCCCCEEECCCCCCHHHHHHHH--hhCCEEE
Confidence 999999998866542 1 1 1 23468899999999999999988999999887765 3567665
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=0.39 Score=47.22 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=55.2
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC---CCcEEEcCCCCCHHHHHHH---HHhcCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL---TIPVIANGNIQCLADVEAC---LAQTGV 356 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~---~iPVi~nGgI~s~~da~~~---l~~~Ga 356 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++-.-..+.++.+.+.+ ++|||+.=|=.+.+++.++ .++.|+
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~-~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Ga 104 (301)
T 3m5v_A 26 DEQSYARLIKRQIENGIDAVVPVGTTGESA-TLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGA 104 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 556778888889999999999966554432 121111124455555543 5899875444445555443 335799
Q ss_pred cEEEeccccccCc
Q psy7343 357 AGVMTAEGNLYNP 369 (487)
Q Consensus 357 d~VmiGRa~l~~P 369 (487)
|++++-...+..|
T Consensus 105 davlv~~P~y~~~ 117 (301)
T 3m5v_A 105 DGILSVAPYYNKP 117 (301)
T ss_dssp SEEEEECCCSSCC
T ss_pred CEEEEcCCCCCCC
Confidence 9999998877766
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=90.47 E-value=0.58 Score=44.07 Aligned_cols=133 Identities=14% Similarity=0.173 Sum_probs=74.8
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV 284 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~ 284 (487)
++..|...|..++.+..+.+++. .|.|++-. ..|.+-. +...-.++++.+++.++.|+.+-+-+
T Consensus 7 i~psila~D~~~l~~~i~~~~~~Gad~ihldi-------~DG~fvp----~~~~g~~~v~~lr~~~~~~~~vhlmv---- 71 (230)
T 1tqj_A 7 VAPSILSADFSRLGEEIKAVDEAGADWIHVDV-------MDGRFVP----NITIGPLIVDAIRPLTKKTLDVHLMI---- 71 (230)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEE-------EBSSSSS----CBCBCHHHHHHHGGGCCSEEEEEEES----
T ss_pred EEEEeeecCHhHHHHHHHHHHHcCCCEEEEEE-------EecCCCc----chhhhHHHHHHHHhhcCCcEEEEEEc----
Confidence 45566666777777777777665 66654432 1111100 11111256667887777787765422
Q ss_pred ccHHHHHHHHHHcCCcEEEEEcc--ccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGR--TVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgR--t~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+..++.+.+.++|+|+|++|.- .. ....+.++.+++. ++-+...=.-.|+.+..+.+ ..++|.|.++
T Consensus 72 ~dp~~~i~~~~~aGadgv~vh~e~~~~--------~~~~~~~~~i~~~-g~~~gv~~~p~t~~e~~~~~-~~~~D~v~~m 141 (230)
T 1tqj_A 72 VEPEKYVEDFAKAGADIISVHVEHNAS--------PHLHRTLCQIREL-GKKAGAVLNPSTPLDFLEYV-LPVCDLILIM 141 (230)
T ss_dssp SSGGGTHHHHHHHTCSEEEEECSTTTC--------TTHHHHHHHHHHT-TCEEEEEECTTCCGGGGTTT-GGGCSEEEEE
T ss_pred cCHHHHHHHHHHcCCCEEEECcccccc--------hhHHHHHHHHHHc-CCcEEEEEeCCCcHHHHHHH-HhcCCEEEEE
Confidence 23455678888999999999843 21 1123556666553 44333322444555444433 3489988776
Q ss_pred c
Q psy7343 363 E 363 (487)
Q Consensus 363 R 363 (487)
.
T Consensus 142 s 142 (230)
T 1tqj_A 142 S 142 (230)
T ss_dssp S
T ss_pred E
Confidence 5
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=90.44 E-value=1.2 Score=42.69 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=56.3
Q ss_pred HHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCH
Q psy7343 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCL 344 (487)
Q Consensus 265 ~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~ 344 (487)
.+++.+++||..|- -+.+..++.+ +..+|+|+|.+.+.... ...+..+-+..+.+++.+++ ++.|.
T Consensus 95 ~ir~~v~lPvLrKD----fi~~~~qi~e-a~~~GAD~ilLi~a~l~-------~~~l~~l~~~a~~lGl~~lv--Ev~~~ 160 (251)
T 1i4n_A 95 AARNLTCRPILAKD----FYIDTVQVKL-ASSVGADAILIIARILT-------AEQIKEIYEAAEELGMDSLV--EVHSR 160 (251)
T ss_dssp HHHTTCCSCEEEEC----CCCSTHHHHH-HHHTTCSEEEEEGGGSC-------HHHHHHHHHHHHTTTCEEEE--EECSH
T ss_pred HHHHhCCCCEEEee----CCCCHHHHHH-HHHcCCCEEEEecccCC-------HHHHHHHHHHHHHcCCeEEE--EeCCH
Confidence 46778899999883 1223335554 77899999998554211 11232233333446888887 88999
Q ss_pred HHHHHHHHhc-CCcEEEecc
Q psy7343 345 ADVEACLAQT-GVAGVMTAE 363 (487)
Q Consensus 345 ~da~~~l~~~-Gad~VmiGR 363 (487)
+++++.+ .. |+|.|.+--
T Consensus 161 eE~~~A~-~l~g~~iIGinn 179 (251)
T 1i4n_A 161 EDLEKVF-SVIRPKIIGINT 179 (251)
T ss_dssp HHHHHHH-TTCCCSEEEEEC
T ss_pred HHHHHHH-hcCCCCEEEEeC
Confidence 9999999 78 999887753
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.3 Score=47.75 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=54.6
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEE-cCCCCCHHHHHHH---HHhcCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA-NGNIQCLADVEAC---LAQTGV 356 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~-nGgI~s~~da~~~---l~~~Ga 356 (487)
|.+...+.++.+.+.|+|+|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+ .|+..+.+ +.++ .++.||
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~-~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~-ai~la~~A~~~Ga 96 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSFGLVPCGTTGESP-TLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAE-AIAFVRHAQNAGA 96 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEETTSGGGTGG-GSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHH-HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHH-HHHHHHHHHHcCC
Confidence 556778888889999999999966554432 121111224455555544 689875 45555544 4333 345799
Q ss_pred cEEEeccccccCc
Q psy7343 357 AGVMTAEGNLYNP 369 (487)
Q Consensus 357 d~VmiGRa~l~~P 369 (487)
|++++....+..|
T Consensus 97 davlv~~P~y~~~ 109 (292)
T 2vc6_A 97 DGVLIVSPYYNKP 109 (292)
T ss_dssp SEEEEECCCSSCC
T ss_pred CEEEEcCCCCCCC
Confidence 9999998877655
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=90.39 E-value=0.75 Score=45.35 Aligned_cols=109 Identities=12% Similarity=0.106 Sum_probs=62.8
Q ss_pred CChHHHHHHHHHHhhhcc--CcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEccccCCC-CCCCCCC--CH-HHHHH
Q psy7343 254 DDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRTVDQR-GMNTGLA--SW-EHITA 326 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~~--~~-~~i~~ 326 (487)
-.++.+...++.|.+..+ +||++-+..|. +..+..+.++.++++|+++|.|-+.....+ |...|.. .. +.+.+
T Consensus 69 vt~~em~~~~~~i~r~~~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~r 148 (307)
T 3lye_A 69 AQLHDMRDNADMIANLDPFGPPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVR 148 (307)
T ss_dssp SCHHHHHHHHHHHHTSSTTSCCEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCCCCcEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHH
Confidence 346666667777777654 99999887653 344567778889999999999965543211 1112221 22 44444
Q ss_pred HHh---h---CCCcEEEcCCCCCH-----HHH-HHH--HHhcCCcEEEec
Q psy7343 327 VRK---A---LTIPVIANGNIQCL-----ADV-EAC--LAQTGVAGVMTA 362 (487)
Q Consensus 327 i~~---~---~~iPVi~nGgI~s~-----~da-~~~--l~~~Gad~VmiG 362 (487)
|+. . .+.+++.++..... +++ ++. ..+.|||++.+=
T Consensus 149 I~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~ 198 (307)
T 3lye_A 149 IRAAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLE 198 (307)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEec
Confidence 432 2 24455555555443 222 222 225899999984
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=90.36 E-value=3.6 Score=39.26 Aligned_cols=123 Identities=22% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec-cccc-------ccHHH
Q psy7343 219 TEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI-YQDV-------NKTVE 289 (487)
Q Consensus 219 ~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~-~~d~-------~~~~e 289 (487)
.+-+..+++. .|-|||+.+- .-+.+......+.. +++.+++||.+=+|. ++|. +...+
T Consensus 11 ~~~a~~A~~~GAdRIELc~~L---------~~GGlTPS~g~i~~----~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~ 77 (256)
T 1twd_A 11 MECALTAQQNGADRVELCAAP---------KEGGLTPSLGVLKS----VRQRVTIPVHPIIRPRGGDFCYSDGEFAAILE 77 (256)
T ss_dssp HHHHHHHHHTTCSEEEECBCG---------GGTCBCCCHHHHHH----HHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCc---------ccCCCCCCHHHHHH----HHHHcCCceEEEECCCCCCCcCCHHHHHHHHH
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEc---CCCCCHHHHHHHHHhcCCcEEE
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIAN---GNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~n---GgI~s~~da~~~l~~~Gad~Vm 360 (487)
-++.+.+.|+|+|.+ |--..+ |..|.+.++++.+.. +.|+..- =-+.++..+.+.+.+.|++.|.
T Consensus 78 Di~~~~~~GadGvV~-G~Lt~d-----g~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~lG~~rIL 146 (256)
T 1twd_A 78 DVRTVRELGFPGLVT-GVLDVD-----GNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVL 146 (256)
T ss_dssp HHHHHHHTTCSEEEE-CCBCTT-----SSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHcCCCEEEE-eeECCC-----CCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHHcCCCEEE
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=90.29 E-value=0.5 Score=47.70 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=53.5
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++..-..+.++.+.+.+ ++|||+.=|=.+.+++.++ .++.|||
T Consensus 78 D~~al~~lv~~li~~Gv~Gl~v~GTTGE~~-~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad 156 (360)
T 4dpp_A 78 DLEAYDDLVNIQIQNGAEGVIVGGTTGEGQ-LMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMH 156 (360)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccChh-hCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 445677888888899999999966554432 111111124455555544 6899874333344444443 3357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++-...+..|
T Consensus 157 avlvv~PyY~k~ 168 (360)
T 4dpp_A 157 AALHINPYYGKT 168 (360)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEcCCCCCCC
Confidence 999988766555
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=90.22 E-value=0.45 Score=47.86 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHHHHHHHc--CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 289 EYARMLERA--GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 289 e~a~~le~~--G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
+.++.+.+. |++.+.+|... + . ....|+.++++++.. ++||++ |+|.|.++++++. +.|+|+|.++-
T Consensus 121 ~~~~~l~~~~~g~~~i~i~~~~----g-~-~~~~~~~i~~lr~~~~~~~vi~-g~v~t~e~A~~a~-~aGaD~I~v~~ 190 (351)
T 2c6q_A 121 EQLEQILEAIPQVKYICLDVAN----G-Y-SEHFVEFVKDVRKRFPQHTIMA-GNVVTGEMVEELI-LSGADIIKVGI 190 (351)
T ss_dssp HHHHHHHHHCTTCCEEEEECSC----T-T-BHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHH-HTTCSEEEECS
T ss_pred HHHHHHHhccCCCCEEEEEecC----C-C-cHHHHHHHHHHHHhcCCCeEEE-EeCCCHHHHHHHH-HhCCCEEEECC
Confidence 344455555 99999887421 1 1 112468899999998 899986 7899999999998 79999998863
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=90.18 E-value=0.83 Score=42.96 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=64.6
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN 338 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n 338 (487)
..++++.+++ .|++.=+|.. +.++..+.++.+.+.|++.|.+.-+ .....+.++++++.+.--+++.
T Consensus 16 ~~~~~~~l~~---~~ii~V~r~~-~~~~~~~~~~al~~gGv~~iel~~k---------~~~~~~~i~~l~~~~~~~~iga 82 (225)
T 1mxs_A 16 AARIDAICEK---ARILPVITIA-REEDILPLADALAAGGIRTLEVTLR---------SQHGLKAIQVLREQRPELCVGA 82 (225)
T ss_dssp HHHHHHHHHH---HSEEEEECCS-CGGGHHHHHHHHHHTTCCEEEEESS---------STHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHH---CCEEEEEeCC-CHHHHHHHHHHHHHCCCCEEEEecC---------CccHHHHHHHHHHhCcccEEee
Confidence 3444444443 3566655543 6678899999999999999999311 2223577888888774345666
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 339 GNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 339 GgI~s~~da~~~l~~~Gad~VmiG 362 (487)
|-+.+.+++...+ ..|||+|.+|
T Consensus 83 gtvl~~d~~~~A~-~aGAd~v~~p 105 (225)
T 1mxs_A 83 GTVLDRSMFAAVE-AAGAQFVVTP 105 (225)
T ss_dssp ECCCSHHHHHHHH-HHTCSSEECS
T ss_pred CeEeeHHHHHHHH-HCCCCEEEeC
Confidence 7799999999999 7899999987
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=90.10 E-value=0.39 Score=44.95 Aligned_cols=72 Identities=8% Similarity=-0.003 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCH-HHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCL-ADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~-~da~~~l~~~Gad~VmiGRa 364 (487)
.....++..++.|++++.+.+. ..+.++.+++.++-.++..+||+.. .+..+++ +.|+|.+.+||+
T Consensus 116 ~v~~~a~~a~~~G~~GvV~sat------------~~~e~~~ir~~~~~f~~v~pGI~~~g~~~~~a~-~~Gad~iVvGr~ 182 (215)
T 3ve9_A 116 FYPYLREVARRVNPKGFVAPAT------------RPSMISRVKGDFPDKLVISPGVGTQGAKPGIAL-CHGADYEIVGRS 182 (215)
T ss_dssp GHHHHHHHHHHHCCSEEECCTT------------SHHHHHHHHHHCTTSEEEECCTTSTTCCTTHHH-HTTCSEEEECHH
T ss_pred HHHHHHHHHHHcCCCceeeCCC------------CHHHHHHHHHhCCCcEEEcCCCCcCcCCHHHHH-HcCCCEEEeCHH
Confidence 4678899999999999988221 2345777887774367788999742 1566677 689999999999
Q ss_pred cccCcc
Q psy7343 365 NLYNPA 370 (487)
Q Consensus 365 ~l~~P~ 370 (487)
++..++
T Consensus 183 I~~a~d 188 (215)
T 3ve9_A 183 VYQSAD 188 (215)
T ss_dssp HHTSSS
T ss_pred HcCCCC
Confidence 887644
|
| >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A | Back alignment and structure |
|---|
Probab=89.76 E-value=4.9 Score=41.28 Aligned_cols=151 Identities=14% Similarity=0.081 Sum_probs=84.5
Q ss_pred CCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh---ccCcEEEE
Q psy7343 204 RPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA---VQVPVSCK 277 (487)
Q Consensus 204 ~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~---~~iPV~vK 277 (487)
.||++-+- | .++.+..+.++.++++ ..+|.|-=... .-.+.|..++.-+.+.+...+-+++++++ .+.++.++
T Consensus 153 lPviaD~DtGyG~~~~v~~tv~~~~~aGaaGi~IEDq~~-~~KkCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~d~~Ii 231 (435)
T 3lg3_A 153 LPIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLA-AVKKCGHMGGKVLVPTQEAIQKLVAARLAADVLGVPTLLI 231 (435)
T ss_dssp CCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEESBCG-GGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCeEEECCCCCCCcHHHHHHHHHHHHcCCEEEEEecCCC-CccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 89999986 3 3555677777777666 77777753321 01122322232233455444444445433 36777777
Q ss_pred eeccc--------------------------------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHH
Q psy7343 278 IRIYQ--------------------------------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325 (487)
Q Consensus 278 iR~~~--------------------------------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~ 325 (487)
-|..- +.++.++-++...+ |+|.|.++. +..+.+-++
T Consensus 232 ARTDa~aa~l~~s~~d~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~if~E~----------~~~~~~ei~ 300 (435)
T 3lg3_A 232 ARTDADAADLLTSDCDPYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-YADLVWCET----------STPDLALAK 300 (435)
T ss_dssp EEECTTTCCEESCCCCGGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-GCSEEEECC----------SSCCHHHHH
T ss_pred EEcCCccccccccccccccchhhcccccccccccccCCHHHHHHHHHHHHc-cCCEEEecC----------CCCCHHHHH
Confidence 77641 22344555556667 999999943 334566666
Q ss_pred HHHhhCC----CcE-EEcCC-CCC------HHHHHHH---HHhcCCcEEEeccccc
Q psy7343 326 AVRKALT----IPV-IANGN-IQC------LADVEAC---LAQTGVAGVMTAEGNL 366 (487)
Q Consensus 326 ~i~~~~~----iPV-i~nGg-I~s------~~da~~~---l~~~Gad~VmiGRa~l 366 (487)
++.+.++ ..+ .+|.. ..+ .++++.+ |.+.|+..+.++-+.+
T Consensus 301 ~f~~~v~~~~P~~~La~~~sPsfnw~~~~~d~~~~~f~~eLa~lG~~~v~~~la~~ 356 (435)
T 3lg3_A 301 RFADAVHAQFPGKLLAYNCSPSFNWKKNLTDQQIASFQDELSAMGYKYQFITLAGI 356 (435)
T ss_dssp HHHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHHHHHHHHHTTEEEEEETTHHH
T ss_pred HHHHHhccccCCeEEEeCCCCCccccccCCHHHHHHHHHHHHHcCCcEEEeCcHHH
Confidence 6665543 333 34432 232 3444332 4467999888885543
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.69 E-value=12 Score=36.33 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=84.3
Q ss_pred cCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE-
Q psy7343 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC- 276 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v- 276 (487)
......||++.+.+++.++..+.++.+++. +|++=+ ....|- ..+.+.+.+..++|.+++++||++
T Consensus 69 ~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv---------~~P~y~---~~~~~~l~~~f~~va~a~~lPiilY 136 (300)
T 3eb2_A 69 AAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILA---------ILEAYF---PLKDAQIESYFRAIADAVEIPVVIY 136 (300)
T ss_dssp HHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEE---------EECCSS---CCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE---------cCCCCC---CCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 345568999999988999999999988887 554432 222121 125677788888888889999987
Q ss_pred Eee--cccccccHHHHHHHHHHcC-CcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH
Q psy7343 277 KIR--IYQDVNKTVEYARMLERAG-CQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 277 KiR--~~~d~~~~~e~a~~le~~G-~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l 351 (487)
|+. .+.+. + .+....+.+.+ +-+|-- ...++..+.++.+.. ++.| ++|+=.. +...+
T Consensus 137 n~P~~tg~~l-~-~~~~~~La~~pnIvgiKd------------ssgd~~~~~~~~~~~~~~f~v-~~G~d~~---~~~~l 198 (300)
T 3eb2_A 137 TNPQFQRSDL-T-LDVIARLAEHPRIRYIKD------------ASTNTGRLLSIINRCGDALQV-FSASAHI---PAAVM 198 (300)
T ss_dssp ECTTTCSSCC-C-HHHHHHHHTSTTEEEEEE------------CSSBHHHHHHHHHHHGGGSEE-EECTTSC---HHHHH
T ss_pred ECccccCCCC-C-HHHHHHHHcCCCEEEEEc------------CCCCHHHHHHHHHHcCCCeEE-EeCcHHH---HHHHH
Confidence 542 22222 2 34444444432 222221 112566666666554 3444 4454332 34455
Q ss_pred HhcCCcEEEeccccccCcccc
Q psy7343 352 AQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 352 ~~~Gad~VmiGRa~l~~P~lf 372 (487)
..|++|++.+.+.+ -|.++
T Consensus 199 -~~G~~G~is~~an~-~P~~~ 217 (300)
T 3eb2_A 199 -LIGGVGWMAGPACI-APRQS 217 (300)
T ss_dssp -HTTCCEEEEGGGGT-CHHHH
T ss_pred -hCCCCEEEeChhhh-hHHHH
Confidence 57999999887754 24443
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=89.66 E-value=8.5 Score=36.72 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=63.9
Q ss_pred cCcEEEEeec-cc---c-cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHH
Q psy7343 271 QVPVSCKIRI-YQ---D-VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLA 345 (487)
Q Consensus 271 ~iPV~vKiR~-~~---d-~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~ 345 (487)
...|++-+.- ++ . ..+..++++.. +.|+++|.|- |... ++.| ..+.+.++++.+++||.---=|-++-
T Consensus 45 ~~~iIAEiKraSPSkg~i~~dp~~iA~~~-~~GA~aiSVL--Td~~--~F~G--s~~~L~~vr~~v~lPvLrKDFiid~y 117 (258)
T 4a29_A 45 ITAIIAVYERKSPSGLDVERDPIEYAKFM-ERYAVGLSIT--TEEK--YFNG--SYETLRKIASSVSIPILMSDFIVKES 117 (258)
T ss_dssp CCCEEEEECSBCTTSCBCCCCHHHHHHHH-TTTCSEEEEE--CCST--TTCC--CHHHHHHHHTTCSSCEEEESCCCSHH
T ss_pred CcEEEEEEecCCCCCCCccCCHHHHHHHH-hCCCeEEEEe--CCCC--CCCC--CHHHHHHHHHhcCCCEeeccccccHH
Confidence 4567764432 11 1 23577888755 5799999883 2222 2444 57889999999999999988889999
Q ss_pred HHHHHHHhcCCcEEEeccccccC
Q psy7343 346 DVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++.+.. ..|||+|.+=-+++.+
T Consensus 118 QI~eAr-~~GADaILLI~a~L~~ 139 (258)
T 4a29_A 118 QIDDAY-NLGADTVLLIVKILTE 139 (258)
T ss_dssp HHHHHH-HHTCSEEEEEGGGSCH
T ss_pred HHHHHH-HcCCCeeehHHhhcCH
Confidence 998887 6899999876555544
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=89.65 E-value=1.4 Score=42.98 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=70.3
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCC------cEEEEEccccCCCCCCCC-CCCH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC------QLLAVHGRTVDQRGMNTG-LASW 321 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~------d~I~VhgRt~~~~g~~~g-~~~~ 321 (487)
|+....+.+++.+ +. .++.||.+|--..-+.++....++.+.+.|. +-|++.=|+.. . .|.. ..|+
T Consensus 114 gA~~~~n~~LLr~----~a-~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~-y-~~~~~~vdl 186 (288)
T 3tml_A 114 PAFLCRQTDFIHA----CA-RSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVS-F-GYNNLVSDM 186 (288)
T ss_dssp CGGGTTCHHHHHH----HH-TSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEE-C-SSSCEECCH
T ss_pred CcccccCHHHHHH----HH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCC-C-CCCcCcCCH
Confidence 4445567776554 33 4689999997544466788888999988887 66666445432 1 1332 1478
Q ss_pred HHHHHHHhhCCCcEEEc---------------CCCCCHH--HHHHHHHhcCCcEEEecccc
Q psy7343 322 EHITAVRKALTIPVIAN---------------GNIQCLA--DVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 322 ~~i~~i~~~~~iPVi~n---------------GgI~s~~--da~~~l~~~Gad~VmiGRa~ 365 (487)
..+..+++ .+.||++. ||-+..- -+.... ..||||++|=+-+
T Consensus 187 ~~i~~lk~-~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAv-A~GadGl~iE~H~ 245 (288)
T 3tml_A 187 RSLAIMRE-TNAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAV-ATGVAGLFMETHP 245 (288)
T ss_dssp HHHHHGGG-GSSCEEEEHHHHTCCCC--------CTTHHHHHHHHHH-HHCCSEEEEEEES
T ss_pred HHHHHHHh-cCCcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHH-HcCCCEEEEeecc
Confidence 88888888 89999983 3433332 233445 5799999987643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 487 | ||||
| d1vhna_ | 305 | c.1.4.1 (A:) Putative flavin oxidoreducatase TM009 | 3e-35 | |
| d1vhna_ | 305 | c.1.4.1 (A:) Putative flavin oxidoreducatase TM009 | 9e-13 | |
| d1ep3a_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 2e-09 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 7e-09 | |
| d1z41a1 | 337 | c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacill | 6e-07 | |
| d1ps9a1 | 330 | c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-ter | 5e-06 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 2e-05 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 8e-05 | |
| d1jvna1 | 323 | c.1.2.1 (A:230-552) Cyclase subunit (or domain) of | 2e-04 | |
| d1djqa1 | 340 | c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N- | 0.004 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Score = 131 bits (329), Expect = 3e-35
Identities = 65/302 (21%), Positives = 116/302 (38%), Gaps = 18/302 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ LAPM ++ +R L+ +G+ ++ MVSA F+ + + + E L+ P +R + +Q
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQ-KTEELLPQPHERNVAVQ 60
Query: 210 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G++ L+EAA++ ID+N GCP + G L D +V LR++
Sbjct: 61 IFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKS 120
Query: 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
V S K R+ + N+ E R+L G + +H + + + E
Sbjct: 121 VSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHT----RTVVQSFTGRAEWKALSVL 176
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389
IP +G+I D + L ++G G++ A G + P +F
Sbjct: 177 EKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSR 236
Query: 390 VAQYPVRLQYA---------RGHVFNMCHHLLTL----PENSDVRLLVGKTNHIKDLRKA 436
++ R V M L R V K ++ L++
Sbjct: 237 EEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQILKEM 296
Query: 437 VD 438
Sbjct: 297 FY 298
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Score = 66.5 bits (161), Expect = 9e-13
Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 7/172 (4%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ LAPM ++ +R L+ +G+ ++ MVSA F+ + + + E L+ P +R + +Q
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQ-KTEELLPQPHERNVAVQ 60
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
+ + R +
Sbjct: 61 IFGSEPNELSEAARILSEKYKWIDLNA---GCPVRKVVKEGAGGALLKDLRHFRYIVREL 117
Query: 200 TPEDRPLIIQFCG---NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHY 248
++ L E D + I+
Sbjct: 118 RKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAE 169
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 56.9 bits (136), Expect = 2e-09
Identities = 43/250 (17%), Positives = 74/250 (29%), Gaps = 38/250 (15%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
T+ PR G+P R+ G + I +KL
Sbjct: 51 TLHPRFGNPT-------------PRVAETASGMLNAIGLQNPGLEVIMTEKLPWLNENFP 97
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
+ A + I++NI CP + + D +
Sbjct: 98 ELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAF----GTDPEVAA 153
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-------- 312
LV + + +VP+ K + +V V A+ +E AG L + + R
Sbjct: 154 ALVKACKAVSKVPLYVK--LSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQP 211
Query: 313 ----------GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
G + + I V + + IP+I G + DV G + V
Sbjct: 212 ILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMY-MAGASAVAVG 270
Query: 363 EGNLYNPALF 372
N +P +
Sbjct: 271 TANFADPFVC 280
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 55.0 bits (131), Expect = 7e-09
Identities = 40/238 (16%), Positives = 71/238 (29%), Gaps = 25/238 (10%)
Query: 155 PMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGND 214
P + + S L + + + + I N
Sbjct: 56 PRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNK 115
Query: 215 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV 274
+ + + K D +++N+ CP + +RG D L+ N+ +RQAVQ+P
Sbjct: 116 NDWMELSRKAEASGADALELNLSCPHGMGERGMGL-ACGQDPELVRNICRWVRQAVQIPF 174
Query: 275 SCKIRIYQD------------------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
K+ TV L+ G AV G +
Sbjct: 175 FAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVS 234
Query: 317 GLA----SWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
G A + +T + +AL P++A G I L +G + +
Sbjct: 235 GTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLH-SGASVLQVCSAVQNQD 291
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Score = 49.2 bits (116), Expect = 6e-07
Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 20/241 (8%)
Query: 172 GSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEA---AKLAEPH 228
G + A IA + + + E +Q + EA
Sbjct: 106 GRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAA 165
Query: 229 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK-- 286
+ P + YG ++ + L ++ ++Q P+ ++ +K
Sbjct: 166 HGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGL 225
Query: 287 ----TVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNI 341
+ +A+ ++ G L+ + +N +R+ + A G I
Sbjct: 226 DIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMI 285
Query: 342 QCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYAR 401
+ E L + L +P A A + L + P +QY R
Sbjct: 286 TDGSMAEEILQNGRADLIFIGRELLRDPFF-------ARTAAKQ---LNTEIPAPVQYER 335
Query: 402 G 402
G
Sbjct: 336 G 336
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 46.1 bits (108), Expect = 5e-06
Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 15/215 (6%)
Query: 172 GSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDG 231
G + +V+ A +S E LI F E
Sbjct: 105 GRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSE 164
Query: 232 IDINIGCPQMVAKRG--HYGAYLQDDWPLLTNLVSSLRQAV--------QVPVSCKIRIY 281
+ + + +G ++ +V ++R+ V ++ + +
Sbjct: 165 GYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDG 224
Query: 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH-----ITAVRKALTIPVI 336
+TVE A+ +E AG ++ + R ++ +++P++
Sbjct: 225 GTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLV 284
Query: 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
I + L++ V A L + L
Sbjct: 285 TTNRINDPQVADDILSRGDADMVSMARPFLADAEL 319
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 43.3 bits (101), Expect = 2e-05
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 14/113 (12%)
Query: 280 IYQDVNKTVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337
TVE A+ R G + HG T +G ++ + V +++ VIA
Sbjct: 121 EIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA 180
Query: 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLV 390
GN+ + + GV + TRP E+ ++ ++
Sbjct: 181 EGNVITPDMYKRVMD-LGVHCSVVG----------GAITRP-KEITKRFVQVM 221
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 41.8 bits (97), Expect = 8e-05
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 3/87 (3%)
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD 346
T + + +AG + I I VIA G I +
Sbjct: 139 TFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALI-EALCKAGIAVIAEGKIHSPEE 197
Query: 347 VEACLAQTGVAGVMTAEGNLYNPALFT 373
+ GVAG++ + P
Sbjct: 198 AKKIND-LGVAGIVVGGA-ITRPKEIA 222
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Score = 41.3 bits (96), Expect = 2e-04
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 288 VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADV 347
E R E G + ++ D E I V+ A+ IPVIA+
Sbjct: 223 WELTRACEALGAGEILLNCIDKDGSNSGY---DLELIEHVKDAVKIPVIASSGAGVPEHF 279
Query: 348 EACLAQTGVAGVMTA 362
E +T + A
Sbjct: 280 EEAFLKTRADACLGA 294
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 36.9 bits (84), Expect = 0.004
Identities = 19/187 (10%), Positives = 52/187 (27%), Gaps = 23/187 (12%)
Query: 208 IQFCGNDSKNLTEAAKLAEPHCDGIDINIGC-------PQMVAKRGHYGAYLQDDWPLLT 260
I + + ++ A + P + YG L++
Sbjct: 144 IAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWL 203
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNK---------TVEYARMLERAGCQLLAVHGRTVDQ 311
+ ++ AV + R D + + + + + + +
Sbjct: 204 ETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAE 263
Query: 312 RGMNTGLA-------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364
G + G + + + V++ PV+ G + + + + A
Sbjct: 264 WGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARP 323
Query: 365 NLYNPAL 371
++ +P L
Sbjct: 324 SIADPFL 330
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 100.0 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.9 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 99.85 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 99.85 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.84 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 99.81 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 99.69 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.68 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 99.66 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.62 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 99.61 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.6 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 99.54 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.53 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.48 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.47 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.35 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.1 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 98.95 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 98.92 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 98.86 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 98.81 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 98.77 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 98.76 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 98.69 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 98.58 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 98.58 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 98.58 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 98.52 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.35 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 98.31 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.31 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.28 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.26 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 98.25 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.22 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 98.19 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.18 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.16 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 98.15 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 98.04 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.93 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.9 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.9 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 97.85 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.82 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.81 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 97.81 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 97.76 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.74 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 97.69 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 97.64 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 97.54 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 97.54 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.49 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 97.48 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 97.47 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.43 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 97.27 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 97.13 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 97.0 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.99 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 96.98 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 96.97 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 96.91 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 96.82 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 96.82 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 96.78 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 96.77 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 96.76 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 96.73 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 96.32 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 96.31 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 96.14 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 96.1 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 96.04 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 96.03 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 96.02 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 95.8 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 95.8 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 95.74 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 95.62 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 95.62 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 95.61 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 95.61 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 95.53 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 95.42 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 95.4 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 95.39 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.32 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 95.31 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 95.29 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 95.27 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 95.27 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 95.14 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 95.02 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 94.98 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 94.87 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 94.78 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 94.76 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 94.75 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 94.71 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 94.68 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 94.66 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 94.65 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 94.64 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 94.61 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 94.6 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 94.5 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 94.41 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 94.4 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 94.35 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 94.13 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 93.96 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 93.95 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 93.86 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 93.85 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 93.8 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 93.72 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 93.7 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 93.68 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 93.65 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 93.49 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 93.27 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 93.05 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 93.0 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 92.88 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 92.81 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 92.76 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 92.68 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 92.62 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 92.58 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 92.32 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 92.32 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 92.19 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 92.12 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 92.08 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 91.87 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 91.85 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 91.72 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 91.59 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 91.5 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 91.35 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 91.26 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 91.25 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 91.09 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 91.09 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 90.69 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 90.59 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 90.5 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 90.32 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 90.08 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 88.78 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 88.69 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 88.14 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 88.04 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 88.01 | |
| d1wdda1 | 325 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 88.0 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 87.8 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 87.71 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 87.65 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 87.57 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 87.38 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 87.34 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 87.34 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 86.79 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 86.18 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 85.59 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 85.56 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 85.5 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 85.48 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 84.38 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 84.31 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 84.23 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 84.19 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 84.11 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 83.59 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 83.3 | |
| d2ayxa1 | 133 | Sensor kinase protein RcsC, C-terminal domain {Esc | 82.79 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 82.49 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 82.21 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 81.47 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 81.42 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 81.16 | |
| d1vkfa_ | 172 | Glycerol uptake operon antiterminator-related prot | 80.77 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 80.75 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 80.71 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 80.25 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.9e-59 Score=465.80 Aligned_cols=287 Identities=26% Similarity=0.412 Sum_probs=250.4
Q ss_pred ceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccccCC
Q psy7343 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDA 159 (487)
Q Consensus 80 ~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma~~ 159 (487)
|++||||+|+||+|||.+|++||+|++|||||++++++++++++..+. .+
T Consensus 2 ki~LAPM~g~td~~fR~l~~~~g~~~~~Temi~~~~~~~~~~~~~~~~-~~----------------------------- 51 (305)
T d1vhna_ 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQ----------------------------- 51 (305)
T ss_dssp EEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CC-----------------------------
T ss_pred eEEEECcCCCccHHHHHHHHHHCcCEEEECCEEechhhhCChhhHhhc-cC-----------------------------
Confidence 689999999999999999999999999999999999887765543311 11
Q ss_pred CchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCC
Q psy7343 160 SELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239 (487)
Q Consensus 160 td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP 239 (487)
+.+.|+++||+|+|++.+.++|+++++.+|+||||||||
T Consensus 52 -----------------------------------------~~e~p~~~Ql~g~~p~~~~~aa~~~~~~~~~IdlN~GCP 90 (305)
T d1vhna_ 52 -----------------------------------------PHERNVAVQIFGSEPNELSEAARILSEKYKWIDLNAGCP 90 (305)
T ss_dssp -----------------------------------------TTCTTEEEEEECSCHHHHHHHHHHHTTTCSEEEEEECCC
T ss_pred -----------------------------------------CCCCCeEEEEeccchhhhhhhhhhhhhheeeeeEEEEec
Confidence 124688899999999999999999988899999999999
Q ss_pred cceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC
Q psy7343 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319 (487)
Q Consensus 240 ~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~ 319 (487)
+..+.++++|++|+.||+++.++++++++.+++||++|+|+|+|..+..++++.++++|++.|+|||||+.|. |.|++
T Consensus 91 ~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~--~~~~a 168 (305)
T d1vhna_ 91 VRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQS--FTGRA 168 (305)
T ss_dssp CHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTT--TSSCC
T ss_pred chhhcccccceeeccCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhhhc--cccch
Confidence 9877777889999999999999999999999999999999999999999999999999999999999999987 99999
Q ss_pred CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC---------CCc----HHHHHHH
Q psy7343 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT---------RPA----WELASEY 386 (487)
Q Consensus 320 ~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~---------~~~----~~~~~~~ 386 (487)
+|+.|+++++ ++||++||||.|.+|+.++++.+||||||||||++.|||+|.++. .+. .+.+.+|
T Consensus 169 ~~~~i~~~~~--~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~~i~~~l~~~~~~~~~~~e~~~~~~~~ 246 (305)
T d1vhna_ 169 EWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERH 246 (305)
T ss_dssp CGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHH
T ss_pred hhhHHHhhhh--hhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhhhhhhhhcCCCcccchhHHHHHhHHHH
Confidence 9999988877 699999999999999999998899999999999999999997641 122 2455667
Q ss_pred HHHHHHc-Ch--hHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q psy7343 387 LDLVAQY-PV--RLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444 (487)
Q Consensus 387 l~~~~~~-~~--~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~ 444 (487)
++++.++ +. .+..+|+|+.+|++ ++++++++|++|.+++|.+++.++++++.++.
T Consensus 247 ~~~~~~~~g~~~~l~~~rkhl~~~~k---g~p~ak~~R~~l~~~~~~~el~~~l~~~~~e~ 304 (305)
T d1vhna_ 247 LELLIKTKGERKAVVEMRKFLAGYTK---DLKGARRFREKVMKIEEVQILKEMFYNFIKEV 304 (305)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHTT---TCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHc---CCCcHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 7766554 43 45678899876654 68899999999999999999999999987653
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.90 E-value=4.1e-23 Score=205.09 Aligned_cols=192 Identities=22% Similarity=0.352 Sum_probs=153.5
Q ss_pred cCCCCCCeeeeeccCCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE
Q psy7343 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC 276 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v 276 (487)
....+.|+++|+.+.+++++.++++.+.+. +|+||+|+|||+.. ++ +.....+++.+.++++++++..++|+++
T Consensus 94 ~~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~--~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~v 169 (311)
T d1ep3a_ 94 ENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK--HG--GQAFGTDPEVAAALVKACKAVSKVPLYV 169 (311)
T ss_dssp HHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGG--GT--TEEGGGCHHHHHHHHHHHHHHCSSCEEE
T ss_pred cccCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCccc--cc--ccccccCHHHHHHHHHHHHhccCCCeee
Confidence 345578999999999999999988877553 89999999999642 21 3344578999999999999999999999
Q ss_pred EeecccccccHHHHHHHHHHcCCcEEEEEccccC--------------CCCCCCCCC----CHHHHHHHHhhCCCcEEEc
Q psy7343 277 KIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD--------------QRGMNTGLA----SWEHITAVRKALTIPVIAN 338 (487)
Q Consensus 277 KiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~--------------~~g~~~g~~----~~~~i~~i~~~~~iPVi~n 338 (487)
|++.+. .+..++++.++++|++++.+++++.. ..++++|.+ .|+.++++++.+++|||+|
T Consensus 170 kl~~~~--~~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~ 247 (311)
T d1ep3a_ 170 KLSPNV--TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGM 247 (311)
T ss_dssp EECSCS--SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEEC
T ss_pred eecccc--cchHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEe
Confidence 997753 45778999999999999999776422 112334433 4788999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHHHH
Q psy7343 339 GNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP-VRLQYARGHV 404 (487)
Q Consensus 339 GgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~~l 404 (487)
|||.|++|+.+++ .+|||+||+|||++.+||+|. ++.++..+++++++ ..+.++++.+
T Consensus 248 GGI~s~~Da~~~i-~~GAd~V~ig~~~~~~P~i~~-------~I~~~L~~~m~~~g~~si~e~~g~~ 306 (311)
T d1ep3a_ 248 GGVANAQDVLEMY-MAGASAVAVGTANFADPFVCP-------KIIDKLPELMDQYRIESLESLIQEV 306 (311)
T ss_dssp SSCCSHHHHHHHH-HHTCSEEEECTHHHHCTTHHH-------HHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCcCCHHHHHHHH-HcCCCEEEecHHHHcCChHHH-------HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999 689999999999999999987 34556666777765 4566666654
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=7.4e-21 Score=190.59 Aligned_cols=160 Identities=17% Similarity=0.183 Sum_probs=131.1
Q ss_pred HHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc---
Q psy7343 216 KNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ--- 282 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~--- 282 (487)
++|.++|++++++ +|+||||+++ |..|.+++.||+.+.++.+++.|++++|+++++..+.+.+|++.
T Consensus 141 ~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~ 220 (330)
T d1ps9a1 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDL 220 (330)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEeccccccc
Confidence 6789999999888 9999999884 88899999999999999999999999999999765556556542
Q ss_pred -----ccccHHHHHHHHHHcCCcEEEEEccccCCCCC-C----CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 283 -----DVNKTVEYARMLERAGCQLLAVHGRTVDQRGM-N----TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 283 -----d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~-~----~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
+.++..++++.+++.|+|.+.++......... . .........+++|+.+++||+++|+|+|+++++++++
T Consensus 221 ~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~ 300 (330)
T d1ps9a1 221 VEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILS 300 (330)
T ss_dssp STTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHH
Confidence 33568889999999999999986543321110 1 1112346678899999999999999999999999997
Q ss_pred hcCCcEEEeccccccCcccccCC
Q psy7343 353 QTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 353 ~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+..||.|++||++++||++..+.
T Consensus 301 ~g~~D~V~~gR~~iadP~~~~k~ 323 (330)
T d1ps9a1 301 RGDADMVSMARPFLADAELLSKA 323 (330)
T ss_dssp TTSCSEEEESTHHHHCTTHHHHH
T ss_pred CCCcchhHhhHHHHhChhHHHHH
Confidence 77799999999999999998754
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=1.2e-20 Score=189.66 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=136.3
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~--- 281 (487)
.++|.++|++++++ ||+||||+++ |..|.+++.||+.+.++.+++.|++++|++.++.|+.++++..
T Consensus 142 i~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~ 221 (337)
T d1z41a1 142 VQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYT 221 (337)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCS
T ss_pred HHHHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccc
Confidence 36789999999887 9999999884 8889999999999999999999999999999999999987763
Q ss_pred ---cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 282 ---QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 282 ---~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
.+.++..++++.+++.|+|.+.++............ ....+..+.+|+.+++||+++|+|+|++++++++++..||
T Consensus 222 ~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D 301 (337)
T d1z41a1 222 DKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRAD 301 (337)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCS
T ss_pred cCccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcc
Confidence 244578889999999999999997665433221211 2356888999999999999999999999999999766799
Q ss_pred EEEeccccccCcccccC
Q psy7343 358 GVMTAEGNLYNPALFTG 374 (487)
Q Consensus 358 ~VmiGRa~l~~P~lf~~ 374 (487)
.|++||++++||++..+
T Consensus 302 ~V~~gR~~iadPd~~~k 318 (337)
T d1z41a1 302 LIFIGRELLRDPFFART 318 (337)
T ss_dssp EEEECHHHHHCTTHHHH
T ss_pred eehhhHHHHhCchHHHH
Confidence 99999999999999763
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.84 E-value=1.7e-19 Score=179.24 Aligned_cols=179 Identities=22% Similarity=0.363 Sum_probs=138.1
Q ss_pred CCeeeee-ccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 204 RPLIIQF-CGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 204 ~Pv~Vqi-~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.++.+++ .+.+.+++.++++.+++. +|+|+||++||+....++ .+..+..+++.+.++++++++.+++||++|++.
T Consensus 103 ~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~-~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~~- 180 (312)
T d1gtea2 103 NIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERG-MGLACGQDPELVRNICRWVRQAVQIPFFAKLTP- 180 (312)
T ss_dssp SEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC------SBGGGCHHHHHHHHHHHHHHCSSCEEEEECS-
T ss_pred cccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccc-cchhhhhhHHHHHHHHHHHhhccCCceeecccc-
Confidence 4455554 578899999999988776 899999999998644443 355566789999999999999999999999854
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEcccc--------------------CCCCCCCCCCC----HHHHHHHHhhC-CCcEE
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTV--------------------DQRGMNTGLAS----WEHITAVRKAL-TIPVI 336 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~--------------------~~~g~~~g~~~----~~~i~~i~~~~-~iPVi 336 (487)
+..+..++++.++++|+|+|.++++.. ...++++|.+. ++.++++++.+ ++|||
T Consensus 181 -~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi 259 (312)
T d1gtea2 181 -NVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPIL 259 (312)
T ss_dssp -CSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEE
T ss_pred -cchhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEE
Confidence 445778999999999999999876532 12234555543 47788888887 69999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQY 393 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~ 393 (487)
++|||.|.+|+.+++ ..|||+||||++++.+ |.++. ++.++.-+++++.
T Consensus 260 ~~GGI~~~~d~~~~l-~aGA~~Vqv~ta~~~~G~~~i~-------~i~~~L~~~m~~~ 309 (312)
T d1gtea2 260 ATGGIDSAESGLQFL-HSGASVLQVCSAVQNQDFTVIQ-------DYCTGLKALLYLK 309 (312)
T ss_dssp EESSCCSHHHHHHHH-HTTCSEEEESHHHHTSCTTHHH-------HHHHHHHHHHHHT
T ss_pred EEcCCCCHHHHHHHH-HcCCCeeEECHhhhccChHHHH-------HHHHHHHHHHHHc
Confidence 999999999999999 7899999999999987 66665 3445545555543
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.81 E-value=3.5e-19 Score=179.05 Aligned_cols=160 Identities=11% Similarity=0.104 Sum_probs=127.1
Q ss_pred HHHHHHHHhhCCc-CcEEEeecC---------CCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeeccc-
Q psy7343 216 KNLTEAAKLAEPH-CDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQ- 282 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN~G---------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~- 282 (487)
++|+++|++++++ ||+||||++ +|..|.+.+.||+.+.++.+++.||+++|+++++ +||.+++...+
T Consensus 149 ~~f~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~ 228 (340)
T d1djqa1 149 QFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTV 228 (340)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECS
T ss_pred HHHHHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeecccccc
Confidence 5789999999888 999999998 4889999999999999999999999999999995 55665554321
Q ss_pred ------ccccHHHHHHHHHHcCCcEEEEEccccCC-------CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHH
Q psy7343 283 ------DVNKTVEYARMLERAGCQLLAVHGRTVDQ-------RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEA 349 (487)
Q Consensus 283 ------d~~~~~e~a~~le~~G~d~I~VhgRt~~~-------~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~ 349 (487)
+.+.....+..+++.|+|.+.|+.....+ ...+.....++..+.+|+.+++||+++|+|+|++++++
T Consensus 229 ~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~ 308 (340)
T d1djqa1 229 YGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIE 308 (340)
T ss_dssp SCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHH
T ss_pred ccCCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHH
Confidence 11223445667888999999986542211 11122334568889999999999999999999999999
Q ss_pred HHHhcCCcEEEeccccccCcccccCC
Q psy7343 350 CLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 350 ~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
++++..||+|++||++++||+|.+++
T Consensus 309 ~l~~G~aDlV~~gR~~iadPdl~~k~ 334 (340)
T d1djqa1 309 IVTKGYADIIGCARPSIADPFLPQKV 334 (340)
T ss_dssp HHHTTSCSBEEESHHHHHCTTHHHHH
T ss_pred HHHCCCccchhhHHHHHHCccHHHHH
Confidence 99766699999999999999998753
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=99.69 E-value=7.9e-17 Score=162.97 Aligned_cols=154 Identities=14% Similarity=0.183 Sum_probs=123.8
Q ss_pred HHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecc---
Q psy7343 216 KNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIY--- 281 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~--- 281 (487)
+.|+++|++++++ ||+||||+++ |..|.+++.||+.+.++.+++.|++++|+++++ -+|.+++...
T Consensus 160 ~~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~ 239 (363)
T d1vyra_ 160 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 239 (363)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccc
Confidence 5789999999888 9999999987 888999999999999999999999999999984 3466665431
Q ss_pred -------cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 282 -------QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 282 -------~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
.+.++..++++.+++.|+|.+.++....... .+....+.+.+++.+++||+++| +.|++.+++++++.
T Consensus 240 ~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~----~~~~~~~~~~~~~~~~~~vi~~G-~~t~~~ae~~l~~G 314 (363)
T d1vyra_ 240 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGG----KPYSEAFRQKVRERFHGVIIGAG-AYTAEKAEDLIGKG 314 (363)
T ss_dssp TTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBC----CCCCHHHHHHHHHHCCSEEEEES-SCCHHHHHHHHHTT
T ss_pred cchhhcccchHHHHHHHHHHHhcCCeeeecccCCccCC----ccccHHHHHHHHHhcCceEEecC-CCCHHHHHHHHHCC
Confidence 1123667788999999999999964321111 11234667788999999999977 55899999999766
Q ss_pred CCcEEEeccccccCcccccC
Q psy7343 355 GVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~lf~~ 374 (487)
.||.|.+||++++||++..+
T Consensus 315 ~~DlV~~gR~liadP~~~~K 334 (363)
T d1vyra_ 315 LIDAVAFGRDYIANPDLVAR 334 (363)
T ss_dssp SCSEEEESHHHHHCTTHHHH
T ss_pred CcceehhhHHHHHCccHHHH
Confidence 69999999999999999764
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.68 E-value=2.5e-16 Score=155.76 Aligned_cols=191 Identities=18% Similarity=0.239 Sum_probs=141.7
Q ss_pred cCCCCCCeeeeeccCCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE
Q psy7343 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC 276 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v 276 (487)
....+.|+++++.+.+.+++.+.++.++.+ .|.+|||++||+.- + +.....+++.+.++++++++..++||.+
T Consensus 89 ~~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~---~--~~~~~~~~~~~~~~~~~v~~~~~~pv~v 163 (311)
T d1juba_ 89 ENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVP---G--EPQLAYDFEATEKLLKEVFTFFTKPLGV 163 (311)
T ss_dssp HTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSS---S--CCCGGGCHHHHHHHHHHHTTTCCSCEEE
T ss_pred hcccCCCceeeccccccchhHHHHHHHhhccccceeeecccccccc---c--cccccccHHHHHHHHHHhhcccccceee
Confidence 345678999999998888887777766543 79999999999741 1 1233468999999999999999999999
Q ss_pred EeecccccccHHHHHHHHHHcCCcEEEEEcccc-----------------CCCCCCCCCCC----HHHHHHHHhhC--CC
Q psy7343 277 KIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV-----------------DQRGMNTGLAS----WEHITAVRKAL--TI 333 (487)
Q Consensus 277 KiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~-----------------~~~g~~~g~~~----~~~i~~i~~~~--~i 333 (487)
|+....+..+...+++.+.+.|++++...+... ...++++|.+. ...+.++++.+ ++
T Consensus 164 Kl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~ 243 (311)
T d1juba_ 164 KLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEI 243 (311)
T ss_dssp EECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTS
T ss_pred cccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCe
Confidence 997655555667778888889999987633211 01233445442 35667777766 59
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHH
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP-VRLQYARG 402 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~ 402 (487)
|||++|||+|.+|+.+++ ..|||.|+++++++.+ |+++. ++.++..+++++.+ ..+.++|+
T Consensus 244 ~Iig~GGI~s~~Da~~~i-~aGA~~Vql~tal~~~Gp~~i~-------~i~~~L~~~m~~~G~~si~e~~G 306 (311)
T d1juba_ 244 QIIGTGGIETGQDAFEHL-LCGATMLQIGTALHKEGPAIFD-------RIIKELEEIMNQKGYQSIADFHG 306 (311)
T ss_dssp EEEEESSCCSHHHHHHHH-HHTCSEEEECHHHHHHCTHHHH-------HHHHHHHHHHHHHTCCSGGGTTT
T ss_pred eEEecCCcCCHHHHHHHH-HcCCCceeeeHhhHhcChHHHH-------HHHHHHHHHHHHcCCCCHHHhcC
Confidence 999999999999999999 7999999999998755 88876 45566666776654 34445444
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.66 E-value=9.2e-16 Score=155.63 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=120.4
Q ss_pred HHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeeccc--
Q psy7343 216 KNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQ-- 282 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~-- 282 (487)
+.|+++|++++++ ||+||||+++ |..|.+.+.||+.+.++.+++.||+++||++++ ..|.++.....
T Consensus 163 ~~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~ 242 (374)
T d1gwja_ 163 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL 242 (374)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred HHHHHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccc
Confidence 6789999999887 9999999986 888999999999999999999999999999984 33444432211
Q ss_pred ---ccc----cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 283 ---DVN----KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 283 ---d~~----~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
... .....++.++..|++.+.++........ ... ...+.+.+++.+++||+++|+| +++.+++++++..
T Consensus 243 ~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~-~~~--~~~~~~~i~~~~~~pvi~~G~i-~~~~ae~~l~~g~ 318 (374)
T d1gwja_ 243 FGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD-ITY--PEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNT 318 (374)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBC-CCC--CTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTS
T ss_pred cCCcccchHHHHHHhhccccccCceEEEeccCcccCCC-cch--hHHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHcCC
Confidence 111 1344566788999999999653221111 111 1235678899999999999999 7999999997778
Q ss_pred CcEEEeccccccCcccccC
Q psy7343 356 VAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 356 ad~VmiGRa~l~~P~lf~~ 374 (487)
||.|++||++++||++..+
T Consensus 319 aDlV~~gR~~iadPd~~~K 337 (374)
T d1gwja_ 319 ADAVAFGRPFIANPDLPER 337 (374)
T ss_dssp CSEEEESHHHHHCTTHHHH
T ss_pred CcEehhhHHHHHCccHHHH
Confidence 9999999999999999764
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=99.62 E-value=1.6e-15 Score=153.22 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=115.7
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecccc
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQD 283 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d 283 (487)
.++|+++|++++++ ||+||||+++ |..|.+++.||+.+.++.+++.||+++||++++ .+|.++.....+
T Consensus 157 i~~f~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~ 236 (364)
T d1icpa_ 157 VNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAH 236 (364)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEeccccc
Confidence 36788999999887 9999999986 778999999999999999999999999999984 456665432111
Q ss_pred -------cccH--HHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 284 -------VNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 284 -------~~~~--~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
..+. ...++.++..+++.+.+........ .......+....+++.++.|++++|++ +++++++++++.
T Consensus 237 ~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~vi~~g~~-~~~~ae~~l~~g 313 (364)
T d1icpa_ 237 YNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTA--WEKIECTESLVPMRKAYKGTFIVAGGY-DREDGNRALIED 313 (364)
T ss_dssp TTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC--------CCCCSHHHHHHCCSCEEEESSC-CHHHHHHHHHTT
T ss_pred ccCCcCcchHHHHHHHHHHhhccceeeeeeecCccccc--ccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHcC
Confidence 1122 3344445566677776643322221 112223345667888999999999886 789999999888
Q ss_pred CCcEEEeccccccCcccccC
Q psy7343 355 GVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~lf~~ 374 (487)
+||.|++||++++||++..+
T Consensus 314 ~aD~V~~gR~~iadPd~~~k 333 (364)
T d1icpa_ 314 RADLVAYGRLFISNPDLPKR 333 (364)
T ss_dssp SCSEEEESHHHHHCTTHHHH
T ss_pred CCceehhHHHHHHCccHHHH
Confidence 89999999999999999753
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=99.61 E-value=5.3e-15 Score=151.17 Aligned_cols=160 Identities=19% Similarity=0.206 Sum_probs=113.2
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeeccc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQ- 282 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~- 282 (487)
.++|+++|++++++ ||+||||+++ |..|.+++.||+.+.++.+++.|++++||+++ +.||.+++....
T Consensus 170 i~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~ 249 (399)
T d1oyaa_ 170 IKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGV 249 (399)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHhCCceEehhhhHHHHHHHhhcccccccccccCcchhhhhHHHHHHHHhhhheeeccCceEEechhhc
Confidence 36789999999888 9999999976 88899999999999999999999999999998 347776664311
Q ss_pred -----cc------ccHHHHHHHHHHcC-----CcEEEEEccccCCCCCCCCCCCH--HHHHHHHhhCCCcEEEcCCCCCH
Q psy7343 283 -----DV------NKTVEYARMLERAG-----CQLLAVHGRTVDQRGMNTGLASW--EHITAVRKALTIPVIANGNIQCL 344 (487)
Q Consensus 283 -----d~------~~~~e~a~~le~~G-----~d~I~VhgRt~~~~g~~~g~~~~--~~i~~i~~~~~iPVi~nGgI~s~ 344 (487)
+. .+..++++.++..+ .+.+.+............+...+ ...+.+++.+++|||++|+|.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~PVi~~G~i~~~ 329 (399)
T d1oyaa_ 250 FNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALH 329 (399)
T ss_dssp TTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHCCSCEEEESSCTTC
T ss_pred ccccCCccccchHHHHHHHHHHHHHhccccccccceeeecccCCCccccccccccchhHHHHHHHHhCCCEEEECCCCCh
Confidence 10 12344455555543 34444422211110000011111 22345778889999999999987
Q ss_pred HHHHHHHHhcCCcEEEeccccccCcccccC
Q psy7343 345 ADVEACLAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
+++.+.+.+.+||.|.+||++++||+|.++
T Consensus 330 ~~~~~~i~~~~aDlV~~gR~liaDP~l~~K 359 (399)
T d1oyaa_ 330 PEVVREEVKDKRTLIGYGRFFISNPDLVDR 359 (399)
T ss_dssp HHHHHHHTTSTTEEEECCHHHHHCTTHHHH
T ss_pred HHHHHHHHcCCCeEhHHHHHHHHCccHHHH
Confidence 777666657789999999999999999764
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=3.2e-17 Score=162.07 Aligned_cols=152 Identities=18% Similarity=0.238 Sum_probs=119.8
Q ss_pred CceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHh--cCCCCCCee
Q psy7343 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILM--STPEDRPLI 207 (487)
Q Consensus 134 ~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~--~~~~~~Pv~ 207 (487)
+|+++|++ |+.|..++..+......|..|+.|+| ||++.+. |++|+++++++.++++ ....+.||+
T Consensus 55 ~p~~~Ql~-----g~~p~~~~~aa~~~~~~~~~IdlN~G---CP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvs 126 (305)
T d1vhna_ 55 RNVAVQIF-----GSEPNELSEAARILSEKYKWIDLNAG---CPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFS 126 (305)
T ss_dssp TTEEEEEE-----CSCHHHHHHHHHHHTTTCSEEEEEEC---CCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEE
T ss_pred CCeEEEEe-----ccchhhhhhhhhhhhhheeeeeEEEE---ecchhhcccccceeeccCHHHHHHHhhhhhhhcccccc
Confidence 49999985 34444444444443445677888999 9998876 7899999999999886 345679999
Q ss_pred eeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 208 IQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 208 Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
||+| |.|.++..+.++.++++ || ..+++|+|++.+. ..||+.+.+ +++ ++||++|+ |
T Consensus 127 vK~RlG~d~~~~~~~~~~l~~~--------G~-~~itvH~Rt~~q~~~~~a~~~~i~~----~~~--~ipvi~NG----d 187 (305)
T d1vhna_ 127 VKTRLGWEKNEVEEIYRILVEE--------GV-DEVFIHTRTVVQSFTGRAEWKALSV----LEK--RIPTFVSG----D 187 (305)
T ss_dssp EEEESCSSSCCHHHHHHHHHHT--------TC-CEEEEESSCTTTTTSSCCCGGGGGG----SCC--SSCEEEES----S
T ss_pred cccccCcccchhhHHHHHHHHh--------CC-cEEEechhhhhhccccchhhhHHHh----hhh--hhhhhccc----c
Confidence 9999 77766777888888887 77 7889999988765 678887654 443 69999998 9
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCC
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRG 313 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g 313 (487)
+.+..++.+.++.+|||+||| ||.....+
T Consensus 188 I~s~~d~~~~l~~tg~dgVMi-GRgal~nP 216 (305)
T d1vhna_ 188 IFTPEDAKRALEESGCDGLLV-ARGAIGRP 216 (305)
T ss_dssp CCSHHHHHHHHHHHCCSEEEE-SGGGTTCT
T ss_pred cccHHHHHHHHHhcCCCeEeh-hHHHHHhh
Confidence 999999999999999999999 99765543
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.54 E-value=6.4e-14 Score=138.38 Aligned_cols=188 Identities=16% Similarity=0.233 Sum_probs=133.3
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhh----CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLA----EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC 276 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~----~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v 276 (487)
..+.|+++.+.+.+.+++.+.++.+ +...|+||||.+||+. .+ +..+..+++.+.++++.+++.+++|+.+
T Consensus 89 ~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~---~~--~~~~~~~~~~~~~i~~~v~~~~~~pi~v 163 (312)
T d2b4ga1 89 YSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNV---PG--KPQVGYDFDTTRTYLQKVSEAYGLPFGV 163 (312)
T ss_dssp TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS---TT--CCCGGGCHHHHHHHHHHHHHHHCSCEEE
T ss_pred ccccceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCc---Cc--chhhhccHHHHHHHHHHhhcccccccee
Confidence 3468999999988877777666543 3338999999999974 11 2234568999999999999999999999
Q ss_pred EeecccccccHHHHHHHHHHcC-CcEEEEEccc------------------cCCCCCCCCCCC----HHHHHHHHhhC-C
Q psy7343 277 KIRIYQDVNKTVEYARMLERAG-CQLLAVHGRT------------------VDQRGMNTGLAS----WEHITAVRKAL-T 332 (487)
Q Consensus 277 KiR~~~d~~~~~e~a~~le~~G-~d~I~VhgRt------------------~~~~g~~~g~~~----~~~i~~i~~~~-~ 332 (487)
|+....+.......+..+.+.+ ++++.. ..+ ....|+++|.+. ...+.++++.+ +
T Consensus 164 Kl~p~~~~~~~~~~~~~~~~~~~~~~i~~-~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~~ 242 (312)
T d2b4ga1 164 KMPPYFDIAHFDMAAAVLNDFPLVKFITC-VNSIGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCPD 242 (312)
T ss_dssp EECCCCCHHHHHHHHHHHTTCTTEEEEEE-CCCEEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHHHHHCTT
T ss_pred ccccccchhHHHHHHHHHHhhhhhhhhhh-cccccccccccccCCCccccccccccCcccccccchhhHHHHHHHHHcCC
Confidence 9955433334444455554544 444432 111 112356777664 36677777766 6
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHH
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP-VRLQYARG 402 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~ 402 (487)
.||+++|||.|.+|+.+++ ..||+.||++++++.+ |.++. ++.++..+++++.+ ..+.++++
T Consensus 243 ~~Iig~GGI~s~~Da~e~i-~aGAs~Vqv~Tal~~~Gp~~i~-------~i~~~L~~~l~~~G~~si~e~~G 306 (312)
T d2b4ga1 243 KLVFGCGGVYSGEEAFLHI-LAGASMVQVGTALHDEGPIIFA-------RLNKELQEIMTNKGYKTLDEFRG 306 (312)
T ss_dssp SEEEEESSCCSHHHHHHHH-HHTEEEEEESHHHHHHCTTHHH-------HHHHHHHHHHHHHTCCSGGGTTT
T ss_pred CceeecCCcCCHHHHHHHH-HcCCChheeehhhHhcCcHHHH-------HHHHHHHHHHHHcCCCCHHHHcC
Confidence 7899999999999999999 7999999999998755 98887 55667677777665 34545444
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.2e-14 Score=145.02 Aligned_cols=191 Identities=18% Similarity=0.212 Sum_probs=129.5
Q ss_pred CCCCeeeeeccC----C-HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccc---cccCChHHHHHHHHHHhhhccCc
Q psy7343 202 EDRPLIIQFCGN----D-SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA---YLQDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 202 ~~~Pv~Vqi~g~----d-~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~---~l~~d~~~i~eiv~~v~~~~~iP 273 (487)
.+.|+++.+.+. + .+++..+.+.++...|.+++|++||+. .+++... .+......+.+....++...++|
T Consensus 145 ~~~pv~vsi~~~~~~~~~~~~~~~~~~~~~~~ad~lelNiScPn~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 222 (367)
T d1d3ga_ 145 DGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNT--AGLRSLQGKAELRRLLTKVLQERDGLRRVHRPA 222 (367)
T ss_dssp TTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEESCCTTS--TTC----CHHHHHHHHHHHHHHHHTSCGGGCCE
T ss_pred cCceEEEEeccccccHHHHHHHHHHHHHhhhcccccccccccccc--cccccccccchhhhHHHHHHHhhhhcccccCCc
Confidence 357999999853 2 244555666666669999999999874 1111010 01111112222222233344789
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC-----------CCCCCCCCCC----HHHHHHHHhhC--CCcEE
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD-----------QRGMNTGLAS----WEHITAVRKAL--TIPVI 336 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~-----------~~g~~~g~~~----~~~i~~i~~~~--~iPVi 336 (487)
+.+|+....+..+..++++.+.++|+++|++...+.. ..++++|.+- ...++.+++.. ++|||
T Consensus 223 v~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIi 302 (367)
T d1d3ga_ 223 VLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPII 302 (367)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEE
T ss_pred cccccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCCCccEE
Confidence 9999965545557888999999999999998443311 1234445442 36667777665 69999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEecccc-ccCcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHH
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGN-LYNPALFTGQTRPAWELASEYLDLVAQYP-VRLQYARG 402 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~-l~~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~ 402 (487)
++|||.|.+|+.+++ ..|||.|||++++ +.+|.++. ++.++..+++++++ ..+..+++
T Consensus 303 g~GGI~s~~Da~e~i-~aGAs~VQi~Ta~~~~Gp~ii~-------~I~~~L~~~l~~~G~~si~dl~G 362 (367)
T d1d3ga_ 303 GVGGVSSGQDALEKI-RAGASLVQLYTALTFWGPPVVG-------KVKRELEALLKEQGFGGVTDAIG 362 (367)
T ss_dssp EESSCCSHHHHHHHH-HHTCSEEEESHHHHHHCTHHHH-------HHHHHHHHHHHHTTCSSHHHHTT
T ss_pred EECCCCCHHHHHHHH-HcCCCHHHhhHHHHhcCcHHHH-------HHHHHHHHHHHHcCCCCHHHhcC
Confidence 999999999999999 7999999999997 57899987 56677778888876 45666554
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.48 E-value=7e-14 Score=143.14 Aligned_cols=164 Identities=19% Similarity=0.195 Sum_probs=122.5
Q ss_pred HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--------------------------
Q psy7343 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-------------------------- 270 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-------------------------- 270 (487)
.+....+......|.++||.+||+. . |.....+++.+.++++++++..
T Consensus 167 ~~~~~~~~~~~~aD~~elNiScPNt--~----glr~~~~~~~L~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (409)
T d1tv5a1 167 DLKYCINKIGRYADYIAINVSSPNT--P----GLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKN 240 (409)
T ss_dssp HHHHHHHHHGGGCSEEEEECCCTTS--T----TGGGGGSHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHhhcccceeeccccccc--c----ccccccCHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhcc
Confidence 3344445555568999999999974 1 1112357888999998887643
Q ss_pred -------------------------cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC---------CCCCCC
Q psy7343 271 -------------------------QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD---------QRGMNT 316 (487)
Q Consensus 271 -------------------------~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~---------~~g~~~ 316 (487)
..||.+|+-...+..+..++++.+++.|+|+|++...+.. ..|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlS 320 (409)
T d1tv5a1 241 NFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS 320 (409)
T ss_dssp ----------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEE
T ss_pred ccccccccccccchhhhhhccccccCCceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCccc
Confidence 2389999855444456899999999999999999554321 245566
Q ss_pred CCCC----HHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHH
Q psy7343 317 GLAS----WEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDL 389 (487)
Q Consensus 317 g~~~----~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~ 389 (487)
|.+. ...++++++.+ ++|||++|||.|.+|+.+++ ..||+.|+|+++++.+ |.++. ++.++..++
T Consensus 321 G~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i-~AGAs~VQv~T~li~~Gp~~v~-------~I~~~L~~~ 392 (409)
T d1tv5a1 321 GAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKI-EAGASVCQLYSCLVFNGMKSAV-------QIKRELNHL 392 (409)
T ss_dssp EHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHH-HTTEEEEEESHHHHHHGGGHHH-------HHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHH-HcCCCHHhhhhHHHhcChHHHH-------HHHHHHHHH
Confidence 6543 36678888887 49999999999999999999 7899999999998655 99987 556677777
Q ss_pred HHHcC
Q psy7343 390 VAQYP 394 (487)
Q Consensus 390 ~~~~~ 394 (487)
+++.+
T Consensus 393 l~~~g 397 (409)
T d1tv5a1 393 LYQRG 397 (409)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 76654
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1.9e-13 Score=136.44 Aligned_cols=168 Identities=22% Similarity=0.238 Sum_probs=118.2
Q ss_pred CCCCCCeeeeeccCC-------HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHH------
Q psy7343 200 TPEDRPLIIQFCGND-------SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL------ 266 (487)
Q Consensus 200 ~~~~~Pv~Vqi~g~d-------~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v------ 266 (487)
...+.|+.+.+.++. .+++....+.++...|++|||.+||.. . |. ..+ .+.+.+.+.+..+
T Consensus 130 ~~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~~~ad~iElNiScPN~--~-g~--~~~-~~~~~l~~~~~~~~~~~~~ 203 (336)
T d1f76a_ 130 AHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNT--P-GL--RTL-QYGEALDDLLTAIKNKQND 203 (336)
T ss_dssp CCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSS--T-TG--GGG-GSHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEEeccCCcchHHHHHHHHHHHHHhhcccceeeecccchhh--h-cc--ccc-ccchhhccchhhhhhhhhh
Confidence 344678888886532 345666667776778999999999963 2 21 111 2333333333322
Q ss_pred ---hhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc-----------CCCCCCCCCCCH----HHHHHHH
Q psy7343 267 ---RQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV-----------DQRGMNTGLASW----EHITAVR 328 (487)
Q Consensus 267 ---~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~-----------~~~g~~~g~~~~----~~i~~i~ 328 (487)
+...++||++|+....+..+..+.++.+.+.|+++++....+. ...|+++|++.. ..+++++
T Consensus 204 ~~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~ 283 (336)
T d1f76a_ 204 LQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLS 283 (336)
T ss_dssp HHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHH
T ss_pred hhhhccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHH
Confidence 2234789999995544445778899999999999998843221 223556666533 6677777
Q ss_pred hhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc-ccCcccccC
Q psy7343 329 KAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN-LYNPALFTG 374 (487)
Q Consensus 329 ~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~-l~~P~lf~~ 374 (487)
+.+ ++|||+.|||.|.+|+.+++ ..||+.|+||+++ +.+|.++.+
T Consensus 284 ~~~~~~ipIIG~GGI~s~~Da~e~i-~aGAsaVQv~Tal~~~Gp~ii~~ 331 (336)
T d1f76a_ 284 LELNGRLPIIGVGGIDSVIAAREKI-AAGASLVQIYSGFIFKGPPLIKE 331 (336)
T ss_dssp HHHTTSSCEEEESSCCSHHHHHHHH-HHTCSEEEESHHHHHHCHHHHHH
T ss_pred HHcCCCCeEEEECCCCCHHHHHHHH-HcCCcHHHHHHHHHhcChHHHHH
Confidence 776 79999999999999999999 7999999999997 568999864
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=99.35 E-value=5.3e-13 Score=135.33 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=113.7
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC-cEEEEeecccc
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV-PVSCKIRIYQD 283 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i-PV~vKiR~~~d 283 (487)
.+.|+++|++++++ +|+||||+++ |..|.+++.||+.+.++.+++.|++++||++++- .+.++.....+
T Consensus 158 i~~f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d 237 (380)
T d1q45a_ 158 VEDYCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAID 237 (380)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHHHHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeeccc
Confidence 36788999999888 9999999876 7889999999999999999999999999999843 33333221111
Q ss_pred -----cc----cHHHHHHH------HHHcCCcEEEEEccccCCC----CCCCCCCC--HHHHHHHHhhCCCcEEEcCCCC
Q psy7343 284 -----VN----KTVEYARM------LERAGCQLLAVHGRTVDQR----GMNTGLAS--WEHITAVRKALTIPVIANGNIQ 342 (487)
Q Consensus 284 -----~~----~~~e~a~~------le~~G~d~I~VhgRt~~~~----g~~~g~~~--~~~i~~i~~~~~iPVi~nGgI~ 342 (487)
.. ...+.++. +...+++.+.+........ ....++.. .+..+.+++.+++||+++|++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~- 316 (380)
T d1q45a_ 238 HLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF- 316 (380)
T ss_dssp GGGCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSC-
T ss_pred ccccccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhccCCcEEeCCCC-
Confidence 11 11222222 3346788888843221110 01111112 256777888999999999998
Q ss_pred CHHHHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 343 CLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+++.+++++++..||.|.+||++++||+|.++.
T Consensus 317 ~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~K~ 349 (380)
T d1q45a_ 317 NKELGMQAVQQGDADLVSYGRLFIANPDLVSRF 349 (380)
T ss_dssp CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred CHHHHHHHHHcCCccchhhhHHHHHCccHHHHH
Confidence 699999999777799999999999999998753
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.10 E-value=1.5e-09 Score=106.95 Aligned_cols=204 Identities=16% Similarity=0.133 Sum_probs=114.0
Q ss_pred CCccccccccCCCch-------HHHHHHHHhCCccceeccccchhhhcChhHH--HHHHhcCCCCCCeeeeecc-CCHHH
Q psy7343 148 SPRFILAPMVDASEL-------PWRLLSRRYGSHLCYTPMVSAHQFIADKKLR--QEILMSTPEDRPLIIQFCG-NDSKN 217 (487)
Q Consensus 148 ~~~~~lApma~~td~-------~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~--~~~l~~~~~~~Pv~Vqi~g-~d~~~ 217 (487)
+.|++.+||.+.+.. .....+.+.|...+... ......+.... ....+......+..+++.. ...+.
T Consensus 35 ~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (329)
T d1p0ka_ 35 SSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGS---QMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQ 111 (329)
T ss_dssp SCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCC---CTTTTTCHHHHHHHHHHHHHCSSSCEEEEEETTCCHHH
T ss_pred CCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeeccc---ccccchhHHHHhhhhhHhhhCCcceEEEeeccchhHHH
Confidence 569999999765522 12344455563322211 11112222111 1222222333445555543 33333
Q ss_pred HHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHH
Q psy7343 218 LTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER 296 (487)
Q Consensus 218 ~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~ 296 (487)
. .+.++.. ++++.+|..+|........ . .+.....+.++.+++..+.|+++|+-. ...+ .+.++.+.+
T Consensus 112 ~---~~~~~~~g~~ai~~~~~~~~~~~~~~~-~----~~~~~~~~~i~~i~~~~~~~vivk~v~--~~~~-~~~a~~~~~ 180 (329)
T d1p0ka_ 112 A---KEAVEMIGANALQIHLNVIQEIVMPEG-D----RSFSGALKRIEQICSRVSVPVIVKEVG--FGMS-KASAGKLYE 180 (329)
T ss_dssp H---HHHHHHTTCSEEEEEECTTTTC-------------CTTHHHHHHHHHHHCSSCEEEEEES--SCCC-HHHHHHHHH
T ss_pred H---HHHHHHcCCCEEEecccccchhhhccc-c----ccccchHHHHHHHHHHcCCCcEEEecC--Ccch-HHHHHHHHh
Confidence 3 3334433 7899999998764333221 1 123334455666777889999998621 2223 455556778
Q ss_pred cCCcEEEEEccccCCC--------------CCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 297 AGCQLLAVHGRTVDQR--------------GMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~~--------------g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+|+|+|.|.+....+. +...+.+..+.+.++.... ++|||+.|||++..|+.+++ ..|||+||+
T Consensus 181 ~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~Dv~KAl-alGAdaV~i 259 (329)
T d1p0ka_ 181 AGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAI-ALGASCTGM 259 (329)
T ss_dssp HTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH-HTTCSEEEE
T ss_pred cCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHHHHHHH-HcCCCchhc
Confidence 9999999955432110 0111223345555555544 79999999999999999999 799999999
Q ss_pred ccccc
Q psy7343 362 AEGNL 366 (487)
Q Consensus 362 GRa~l 366 (487)
||+++
T Consensus 260 Gr~~l 264 (329)
T d1p0ka_ 260 AGHFL 264 (329)
T ss_dssp CHHHH
T ss_pred cHHHH
Confidence 99654
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=4.3e-09 Score=104.77 Aligned_cols=202 Identities=17% Similarity=0.112 Sum_probs=121.2
Q ss_pred CCccccccccCCCch------HHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVDASEL------PWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~td~------~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|++.+||.+.+.. .....+.++|. +|..++.-... .+++... ..+.+...|+. ..+.+...+
T Consensus 69 ~~P~~Iapmtgg~~~~~~~~~~lA~aA~~~g~-----~~~~~s~s~~~---~e~v~~~-~~~~~~~~ql~~~~~~~~~~~ 139 (349)
T d1tb3a1 69 SAPICISPTAFHSIAWPDGEKSTARAAQEANI-----CYVISSYASYS---LEDIVAA-APEGFRWFQLYMKSDWDFNKQ 139 (349)
T ss_dssp SSSEEECCCSCGGGTCTTTHHHHHHHHHHHTC-----CEEECTTCSSC---HHHHHHH-STTCCEEEECCCCSCTTHHHH
T ss_pred cceEEEcchhcccccccchhhHHHHhhhhccc-----ceeeccccccc---chhhhhh-ccCCCeeeeeecccCHHHHHH
Confidence 779999999876432 23456666663 33332211111 1222222 23567888887 345455555
Q ss_pred HHHhhCCc-CcEEEeecCCCcc----------------eeec------cCcc----ccccCChHHHHHHHHHHhhhccCc
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQM----------------VAKR------GHYG----AYLQDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~----------------i~~~------gr~G----~~l~~d~~~i~eiv~~v~~~~~iP 273 (487)
..++++++ +.++-+....|.. ...+ .... .....++....+-++.+++..+.|
T Consensus 140 ~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~p 219 (349)
T d1tb3a1 140 MVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSITRLP 219 (349)
T ss_dssp HHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-------------CCCCHHHHHHHHTTCCSC
T ss_pred HHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccccccccccCCCCCHHHHHHHHHhcCCC
Confidence 66655554 4555444333210 0000 0000 000001111123455677888999
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l 351 (487)
+++|+-. + .+-+..+.+.|+|+|.|++....+. -..++..+.+.++++.+ ++|||+.|||++..|+.+.+
T Consensus 220 ii~Kgi~-----~-~~da~~a~~~G~d~i~vsnhggr~~--d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KAL 291 (349)
T d1tb3a1 220 IILKGIL-----T-KEDAELAMKHNVQGIVVSNHGGRQL--DEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKAL 291 (349)
T ss_dssp EEEEEEC-----S-HHHHHHHHHTTCSEEEECCGGGTSS--CSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH
T ss_pred cccchhh-----h-hHHHHHHHHhhccceeeeccccccc--cccccchhhcceeeeccCCCeeEEeccCcCcHHHHHHHH
Confidence 9999633 2 3446677889999999965544443 23455668888888776 78999999999999999999
Q ss_pred HhcCCcEEEecccccc
Q psy7343 352 AQTGVAGVMTAEGNLY 367 (487)
Q Consensus 352 ~~~Gad~VmiGRa~l~ 367 (487)
..|||+|+|||+++.
T Consensus 292 -ALGA~~V~igrp~L~ 306 (349)
T d1tb3a1 292 -ALGARCIFLGRPILW 306 (349)
T ss_dssp -HTTCSCEEESHHHHH
T ss_pred -HcCCCEEEEChHHHH
Confidence 799999999998764
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=98.92 E-value=2.9e-09 Score=103.64 Aligned_cols=204 Identities=18% Similarity=0.195 Sum_probs=114.6
Q ss_pred CCccccccccCCCchHH------HHHHHHhCCccceeccccchhhhcChhHHHH-HHhcCCCCCCeeeeeccC-----CH
Q psy7343 148 SPRFILAPMVDASELPW------RLLSRRYGSHLCYTPMVSAHQFIADKKLRQE-ILMSTPEDRPLIIQFCGN-----DS 215 (487)
Q Consensus 148 ~~~~~lApma~~td~~f------r~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~-~l~~~~~~~Pv~Vqi~g~-----d~ 215 (487)
+.|++++||.+.+.... ...+.+.|...+.. ..+....+...... .++....+.++.+++... ..
T Consensus 36 ~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (310)
T d1vcfa1 36 KAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLG---SGRILLERPEALRSFRVRKVAPKALLIANLGLAQLRRYGR 112 (310)
T ss_dssp SSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEE---ECHHHHHCTTTHHHHCCTTTCSSSCEEEEEEGGGGGTCCH
T ss_pred CCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEec---cchhcchhhhhhcccchHHhcCCcceeeeecccchhhhhH
Confidence 67999999987664432 24555667433221 12222222221111 122333456777776532 22
Q ss_pred HHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHH
Q psy7343 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLE 295 (487)
Q Consensus 216 ~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le 295 (487)
+...++.+... .+.+.+|..+|......+. ..+....+.... ....+.|+.+|+-. .. ...+.++.+.
T Consensus 113 ~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~p~~~k~v~--~~-~~~e~a~~~~ 180 (310)
T d1vcfa1 113 DDLLRLVEMLE--ADALAFHVNPLQEAVQRGD------TDFRGLVERLAE-LLPLPFPVMVKEVG--HG-LSREAALALR 180 (310)
T ss_dssp HHHHHHHHHHT--CSEEEEECCHHHHHHTTSC------CCCTTHHHHHHH-HCSCSSCEEEECSS--SC-CCHHHHHHHT
T ss_pred HHHHHHHHhcC--CCeeccccccchhhhcccc------cccccHHHHHHH-HhhccCCceeeeec--Cc-ccHHHHHHHH
Confidence 33333333332 5677788777543222221 111112233332 23458899999622 11 2356677888
Q ss_pred HcCCcEEEEEccccC---------CCC-------CCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 296 RAGCQLLAVHGRTVD---------QRG-------MNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 296 ~~G~d~I~VhgRt~~---------~~g-------~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
++|+|+|.|.++... +.+ ...|.+..+.+.++++.. ++|||+.|||++..|+.+++ ..|||+
T Consensus 181 ~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv~KAL-alGAda 259 (310)
T d1vcfa1 181 DLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKAL-ALGADL 259 (310)
T ss_dssp TSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHH-HHTCSE
T ss_pred HcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCchHHHHHHH-HhCCCE
Confidence 999999999654321 100 011223345666666554 79999999999999999999 799999
Q ss_pred EEecccccc
Q psy7343 359 VMTAEGNLY 367 (487)
Q Consensus 359 VmiGRa~l~ 367 (487)
||+||+++.
T Consensus 260 V~iGr~~l~ 268 (310)
T d1vcfa1 260 LAVARPLLR 268 (310)
T ss_dssp EEECGGGHH
T ss_pred eeEhHHHHH
Confidence 999998764
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=2.6e-08 Score=98.09 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=114.7
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHh-cCCCCCCeeeeeccCCHHHHHHHHHhh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILM-STPEDRPLIIQFCGNDSKNLTEAAKLA 225 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~-~~~~~~Pv~Vqi~g~d~~~~~~aa~~~ 225 (487)
+-|++.+||..+++..+.....+.|. +... .. .+++...+.++ ......++.+-+.- +++....+..++
T Consensus 37 ~iPIIaa~MdtV~~~~mA~als~~GGlGvi~-r~-------~~~e~~~~~i~~vk~~~~~v~~~vgv-~~~~~e~~~~li 107 (330)
T d1vrda1 37 NIPLVSAAMDTVTEAALAKALAREGGIGIIH-KN-------LTPDEQARQVSIVKKTRLLVGAAVGT-SPETMERVEKLV 107 (330)
T ss_dssp SSSEEECCCTTTCSHHHHHHHHTTTCEEEEC-SS-------SCHHHHHHHHHHHHTCCBCCEEEECS-STTHHHHHHHHH
T ss_pred CCCEEeCCCCCcCCHHHHHHHHHCCCeEEee-cc-------cchhhhHHHHHHHhhhccEEEEEEec-CHHHHHHHHHHH
Confidence 56999999999999887655555553 2221 11 12222222222 12233445555542 334444444444
Q ss_pred CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 226 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 226 ~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
+...|.|-|..+ || +.....+.++.+++.. ++||++. ++ ...+.++.|.++|+|+|.|
T Consensus 108 ~agvd~ivId~A-------~G--------~~~~~~~~ik~ik~~~~~~~viaG-----nV-~t~~~a~~l~~~GaD~v~V 166 (330)
T d1vrda1 108 KAGVDVIVIDTA-------HG--------HSRRVIETLEMIKADYPDLPVVAG-----NV-ATPEGTEALIKAGADAVKV 166 (330)
T ss_dssp HTTCSEEEECCS-------CC--------SSHHHHHHHHHHHHHCTTSCEEEE-----EE-CSHHHHHHHHHTTCSEEEE
T ss_pred HCCCCEEEEecC-------CC--------CchhHHHHHHHHHHhCCCCCEEee-----ch-hHHHHHHHHHHcCCCEEee
Confidence 443444333211 11 3556666777777654 6788774 22 3466678888999999999
Q ss_pred EccccC-------CCCCCCCCCCHHHHH---HHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 305 HGRTVD-------QRGMNTGLASWEHIT---AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 305 hgRt~~-------~~g~~~g~~~~~~i~---~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
|-... ..| .|.+.+..+. ++++..++|||+.|||.+..|+.+.| ..|||+||+|+-|..-.
T Consensus 167 -Gig~Gs~ctt~~~~G--~g~p~~sai~~~~~~~~~~~vpvIAdGGi~~~gdiakAl-a~GAd~Vm~Gs~fa~~~ 237 (330)
T d1vrda1 167 -GVGPGSICTTRVVAG--VGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKAL-AAGAESVMVGSIFAGTE 237 (330)
T ss_dssp -CSSCSTTCHHHHHHC--CCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHH-HTTCSEEEESHHHHTBT
T ss_pred -ccccCccccccceec--cccccchhHHHHHHHHHhcCceEEecCCcccCCchheee-eccCceeeecchheeec
Confidence 54321 111 1234444444 44566799999999999999999999 79999999999877753
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=98.81 E-value=5.5e-09 Score=96.44 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=73.0
Q ss_pred HHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC--CCCCCCCCCHHHHHHHHhhCCCcEEE
Q psy7343 260 TNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ--RGMNTGLASWEHITAVRKALTIPVIA 337 (487)
Q Consensus 260 ~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~--~g~~~g~~~~~~i~~i~~~~~iPVi~ 337 (487)
.+.++.+++....++... +. ...+.+..+++.|+|+|.+.+++... .+......+++.+.++++.+++||++
T Consensus 107 ~~~~~~~~~~~~~~~v~~-----~~-~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia 180 (222)
T d1y0ea_ 107 DELVSYIRTHAPNVEIMA-----DI-ATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA 180 (222)
T ss_dssp HHHHHHHHHHCTTSEEEE-----EC-SSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHhCCceEEee-----cC-CCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEE
Confidence 444555555543344333 22 33445677889999999874433221 11122234578999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
+|||.|.+|+.+++ +.|||+|++|+++ .+|+.+
T Consensus 181 ~GGI~t~~d~~~~~-~~GAdgV~iGsAi-~rp~~~ 213 (222)
T d1y0ea_ 181 EGNVITPDMYKRVM-DLGVHCSVVGGAI-TRPKEI 213 (222)
T ss_dssp ESSCCSHHHHHHHH-HTTCSEEEECHHH-HCHHHH
T ss_pred eCCCCCHHHHHHHH-HcCCCEEEEchhh-cCHHHH
Confidence 99999999999999 6999999999975 467654
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.77 E-value=8.1e-08 Score=96.10 Aligned_cols=103 Identities=22% Similarity=0.281 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCC-------CCCCHHHHHH-
Q psy7343 256 WPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT-------GLASWEHITA- 326 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~-------g~~~~~~i~~- 326 (487)
.+...+.++.+++.. ++||++- ++ .+.+.++.|.++|+|+|.| |-+... ..+ |.+.+..+..
T Consensus 144 ~~~~~~~i~~ik~~~~~~~iIaG-----nV-aT~e~a~~L~~aGAD~VkV-GiG~Gs--~ctTr~~tGvG~pq~sai~~~ 214 (378)
T d1jr1a1 144 SIFQINMIKYMKEKYPNLQVIGG-----NV-VTAAQAKNLIDAGVDALRV-GMGCGS--ICITQEVLACGRPQATAVYKV 214 (378)
T ss_dssp SHHHHHHHHHHHHHSTTCEEEEE-----EE-CSHHHHHHHHHHTCSEEEE-CSSCST--TBCHHHHHCCCCCHHHHHHHH
T ss_pred chhhHHHHHHHHHHCCCCceeec-----cc-ccHHHHHHHHHhCCCEEee-cccccc--ccccccccccCcccchhhhHH
Confidence 344556666676655 5676652 22 4556677888999999999 543211 111 3344544444
Q ss_pred --HHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 327 --VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 327 --i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+++..++|||+.|||.+..|+.+.| ..|||+||+|+.|.+-
T Consensus 215 ~~~a~~~~vpIIADGGi~~~gdiakAl-a~GAd~VMmGs~fAgt 257 (378)
T d1jr1a1 215 SEYARRFGVPVIADGGIQNVGHIAKAL-ALGASTVMMGSLLAAT 257 (378)
T ss_dssp HHHHGGGTCCEEEESCCCSHHHHHHHH-HTTCSEEEESTTTTTB
T ss_pred HHhhcccCCceecccccccCCceeeEE-Eeecceeeecceeeee
Confidence 4455689999999999999999999 7999999999987755
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.76 E-value=1.3e-08 Score=94.64 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~ 337 (487)
.+.+.++.++......+... +. ...+.++.++++|+|.|.+++|+..+.+.......+ .+.++....++||++
T Consensus 116 ~~~~~~~~~~~~~~~~~v~~-----~v-~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ipvia 188 (230)
T d1yxya1 116 DIASFIRQVKEKYPNQLLMA-----DI-STFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDV-ALIEALCKAGIAVIA 188 (230)
T ss_dssp CHHHHHHHHHHHCTTCEEEE-----EC-SSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCH-HHHHHHHHTTCCEEE
T ss_pred hHHHHHHHHHhcCCCceEec-----CC-CCHHHHHHHHhcCCCEEEeecccccccccccchHHH-HHHHHHhcCCCeEEE
Confidence 34555555655544344333 22 345667888899999999988876554323333333 355666778999999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+|||+|++|+.+++ +.|||+||||+++. +|.
T Consensus 189 ~GGI~t~~d~~~al-~~GAd~V~vGsAi~-~p~ 219 (230)
T d1yxya1 189 EGKIHSPEEAKKIN-DLGVAGIVVGGAIT-RPK 219 (230)
T ss_dssp ESCCCSHHHHHHHH-TTCCSEEEECHHHH-CHH
T ss_pred eCCCCCHHHHHHHH-HcCCCEEEEChhhc-CHH
Confidence 99999999999999 79999999999865 554
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.69 E-value=9.7e-08 Score=95.00 Aligned_cols=203 Identities=20% Similarity=0.188 Sum_probs=122.6
Q ss_pred CCccccccccCCCc------hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeecc-CCHHHHHH
Q psy7343 148 SPRFILAPMVDASE------LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG-NDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~td------~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g-~d~~~~~~ 220 (487)
+.|++++||.+... ......+.+.|... ..++.-... ..++.. ..+.|...|+.. .+......
T Consensus 70 ~~P~~IspMtgg~~~~~~~e~~lA~aA~~~gi~~-----~~~s~s~~s---~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 139 (359)
T d1goxa_ 70 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIM-----TLSSWATSS---VEEVAS--TGPGIRFFQLYVYKDRNVVAQ 139 (359)
T ss_dssp SSSEEECCCSCGGGTCTTHHHHHHHHHHHTTCCE-----EECTTCSSC---HHHHHT--TCCCCEEEEECCBSSHHHHHH
T ss_pred CCceeeccccccccCCCchHHHhhhhHHhhCCcc-----ccccccccc---chhhHH--hcCCCcccccccchhHHHHHH
Confidence 78999999986532 22345666677433 222211111 122221 224577888873 45555555
Q ss_pred HHHhhCCc-CcEEEeecCCCccee-----eccC------ccccc----------------------cCChHHHHHHHHHH
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVA-----KRGH------YGAYL----------------------QDDWPLLTNLVSSL 266 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~-----~~gr------~G~~l----------------------~~d~~~i~eiv~~v 266 (487)
..+.++.+ ++.+-++...|.... +++. ....+ .-++....+-++.+
T Consensus 140 l~~~~~~a~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 219 (359)
T d1goxa_ 140 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWL 219 (359)
T ss_dssp HHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHH
T ss_pred HHHHHHHhhcccccccccchhhhhhhhhccccccCCcccchhhhhhhccccCcccccccHHHHHHhhcCCCCCHHHHHHH
Confidence 66655554 677766665532100 0000 00000 00111122335667
Q ss_pred hhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCH
Q psy7343 267 RQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCL 344 (487)
Q Consensus 267 ~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~ 344 (487)
++..+.|+++|+ +.. .+-+..+.++|++++.+......+. ..+.+..+.+..+++.+ ++|||++|||++.
T Consensus 220 ~~~~~~~~~~kg-----~~~-~~da~~a~~~g~~~~~vsnhggr~l--d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G 291 (359)
T d1goxa_ 220 QTITSLPILVKG-----VIT-AEDARLAVQHGAAGIIVSNHGARQL--DYVPATIMALEEVVKAAQGRIPVFLDGGVRRG 291 (359)
T ss_dssp HHHCCSCEEEEC-----CCS-HHHHHHHHHTTCSEEEECCGGGTSS--TTCCCHHHHHHHHHHHTTTSSCEEEESSCCSH
T ss_pred Hhhcccceeeec-----ccc-hHHHHHHHHccccceeccccccccc--ccccchhhhchhhhhccCCccceeeccCcCcH
Confidence 777789999996 223 3445667789999999954433333 34555667777877776 6999999999999
Q ss_pred HHHHHHHHhcCCcEEEeccccccCc
Q psy7343 345 ADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
.|+.+.| ..|||.|.+||++|.-+
T Consensus 292 ~Di~KAL-aLGAd~vgigrp~L~~l 315 (359)
T d1goxa_ 292 TDVFKAL-ALGAAGVFIGRPVVFSL 315 (359)
T ss_dssp HHHHHHH-HHTCSEEEECHHHHHHH
T ss_pred HHHHHHH-HcCCCEEEEcHHHHHHH
Confidence 9999999 79999999999877543
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.58 E-value=2.7e-07 Score=91.26 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=75.0
Q ss_pred HHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 260 TNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 260 ~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
.+-++.+++..+.|+++|+ +.+ .+.+..+.+.|++++.+..-...+. ...+..++.+.++....++|||++|
T Consensus 211 ~~~i~~l~~~~~~~i~~kg-----v~~-~~~~~~a~~~g~~~~~~s~~gg~~~--~~~~~~~~~l~~i~~~~~~~viasG 282 (353)
T d1p4ca_ 211 WEALRWLRDLWPHKLLVKG-----LLS-AEDADRCIAEGADGVILSNHGGRQL--DCAISPMEVLAQSVAKTGKPVLIDS 282 (353)
T ss_dssp HHHHHHHHHHCCSEEEEEE-----ECC-HHHHHHHHHTTCSEEEECCGGGTSC--TTCCCGGGTHHHHHHHHCSCEEECS
T ss_pred HHHHHHHHhccccchhhhc-----chh-hhhHHHHHhcCCchhhhcccccccc--cccccchhcccchhcccccceeecC
Confidence 3445556777889999996 323 3455677889999999843322222 3345566777788888899999999
Q ss_pred CCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 340 NIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 340 gI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
||++.-|+.+.| ..|||.|++||+++.
T Consensus 283 GIR~G~Dv~KAL-aLGAd~vgigrp~L~ 309 (353)
T d1p4ca_ 283 GFRRGSDIVKAL-ALGAEAVLLGRATLY 309 (353)
T ss_dssp SCCSHHHHHHHH-HTTCSCEEESHHHHH
T ss_pred CcCchHHHHHHH-HcCCCEEEEcHHHHH
Confidence 999999999999 799999999998764
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.58 E-value=5.8e-07 Score=89.26 Aligned_cols=188 Identities=19% Similarity=0.171 Sum_probs=109.3
Q ss_pred CCccccccccCCCchHHHHHHHHhC-CccceeccccchhhhcChhHHHHHHh---cCCCCCCeeeeeccCCHHHHHHHHH
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILM---STPEDRPLIIQFCGNDSKNLTEAAK 223 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~G-a~l~~t~~v~~~~Ll~~~~~~~~~l~---~~~~~~Pv~Vqi~g~d~~~~~~aa~ 223 (487)
+-|++.|||-.+++..+.....+.| .+... ... ..+...+... .......+.+-+.- .++.+..+..
T Consensus 44 ~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlh-r~~-------~~~e~~~~~~~~~~~~~~~~v~aavGv-~~~~~er~~~ 114 (365)
T d1zfja1 44 NIPIITAAMDTVTGSKMAIAIARAGGLGVIH-KNM-------SITEQAEEVRKVKRSEGRLLVAAAVGV-TSDTFERAEA 114 (365)
T ss_dssp SSSEEECCCTTTCSHHHHHHHHHTTCEEEEC-CSS-------CHHHHHHHHHHHHHHTSCBCCEEEECS-STTHHHHHHH
T ss_pred CCCEEECCCCCcCCHHHHHHHHHCCCceEEc-Ccc-------CHHHHHHHhhhhhhccCceEEEEEecc-CchHHHHHHH
Confidence 5699999999999887764444444 23321 111 1111111111 11112234444432 3334444444
Q ss_pred hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEE
Q psy7343 224 LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLL 302 (487)
Q Consensus 224 ~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I 302 (487)
+++...|.|-|... || ......+.++.+++.. ++||++- ++ .+.+.++.|.++|+|+|
T Consensus 115 l~~agvd~ivID~A-------~G--------~s~~~~~~i~~ik~~~~~~~iIaG-----NV-~T~e~a~~L~~aGaD~V 173 (365)
T d1zfja1 115 LFEAGADAIVIDTA-------HG--------HSAGVLRKIAEIRAHFPNRTLIAG-----NI-ATAEGARALYDAGVDVV 173 (365)
T ss_dssp HHHHTCSEEEECCS-------CT--------TCHHHHHHHHHHHHHCSSSCEEEE-----EE-CSHHHHHHHHHTTCSEE
T ss_pred HHHcCCCEEEEECC-------cc--------cccchhHHHHHHHhhCCCcceeec-----cc-ccHHHHHHHHhcCCceE
Confidence 44433555433211 22 2344555666677665 6677652 33 34566677889999999
Q ss_pred EEEccc-------cCCCCCCCCCCCHHHHHHH---HhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 303 AVHGRT-------VDQRGMNTGLASWEHITAV---RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 303 ~VhgRt-------~~~~g~~~g~~~~~~i~~i---~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
.| |-+ +...| -|.+.+..+.++ ++..++|||+.|||.+.-|+.+.| ..|||+||+|.-|..-.
T Consensus 174 kV-GiG~Gs~CTTr~~tG--vGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAl-a~GAd~VMlG~~lAg~~ 246 (365)
T d1zfja1 174 KV-GIGPGSICTTRVVAG--VGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKAL-AAGGNAVMLGSMFAGTD 246 (365)
T ss_dssp EE-CSSCCTTBCHHHHTC--CCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHH-HTTCSEEEESTTTTTBS
T ss_pred Ee-eecccccccCcceee--eeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhh-hccCCEEEecchhcccc
Confidence 99 532 11221 133455555544 455689999999999999999999 79999999998766543
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=98.58 E-value=1.1e-07 Score=95.66 Aligned_cols=103 Identities=22% Similarity=0.247 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc-------cCCCCCCCCCCCHHHHHHH
Q psy7343 256 WPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT-------VDQRGMNTGLASWEHITAV 327 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt-------~~~~g~~~g~~~~~~i~~i 327 (487)
-+.+.++++.+++.. ++||++- ++ .+.+.++.|.++|+|+|.| |-. +...| -|.+.+..+.++
T Consensus 176 s~~~~~~i~~ik~~~~~v~vIaG-----NV-~T~e~a~~L~~~GaD~VkV-GiGpGs~CtTr~~~G--vG~pq~sai~~~ 246 (388)
T d1eepa_ 176 STRIIELIKKIKTKYPNLDLIAG-----NI-VTKEAALDLISVGADCLKV-GIGPGSICTTRIVAG--VGVPQITAICDV 246 (388)
T ss_dssp SHHHHHHHHHHHHHCTTCEEEEE-----EE-CSHHHHHHHHTTTCSEEEE-CSSCSTTSHHHHHHC--CCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCceeec-----cc-cCHHHHHHHHhcCCCeeee-ccccccccccccccc--cCcchHHHHHHH
Confidence 455567777787665 6787763 23 4556677788999999999 532 22221 133455555554
Q ss_pred H---hhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 328 R---KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 328 ~---~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
. ....+|||+.|||++.-|+.+.| ..|||+||+|+.+..-
T Consensus 247 ~~~~~~~~vpiIADGGi~~~Gdi~KAl-a~GAd~VMlG~~lAg~ 289 (388)
T d1eepa_ 247 YEACNNTNICIIADGGIRFSGDVVKAI-AAGADSVMIGNLFAGT 289 (388)
T ss_dssp HHHHTTSSCEEEEESCCCSHHHHHHHH-HHTCSEEEECHHHHTB
T ss_pred HHHhccCCceEEeccccCcCCceeeeE-Eeccceeecchhhhcc
Confidence 3 34589999999999999999999 7999999999976654
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=8.5e-07 Score=89.78 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=69.4
Q ss_pred HHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh-----hC--CC
Q psy7343 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK-----AL--TI 333 (487)
Q Consensus 261 eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~-----~~--~i 333 (487)
+.++.++...+.|+++|+-. . .+-+..+.+.|++++.+.+....+.. ........+.++.+ .+ ++
T Consensus 236 ~~i~~i~~~~~~~~i~kgi~-----~-~~da~~~~~~G~~~i~vsnhggr~~d--~~~~~~~~l~~i~~~~~~~~v~~~~ 307 (414)
T d1kbia1 236 KDIEELKKKTKLPIVIKGVQ-----R-TEDVIKAAEIGVSGVVLSNHGGRQLD--FSRAPIEVLAETMPILEQRNLKDKL 307 (414)
T ss_dssp HHHHHHHHHCSSCEEEEEEC-----S-HHHHHHHHHTTCSEEEECCTTTTSST--TCCCHHHHHHHHHHHHHTTTCBTTB
T ss_pred HHHHHHhccCCceEEeeccc-----h-hHHHHHHHhcCCcceeeccccccccc--cccccccchhhhhhhhhhhccCCce
Confidence 34555777889999999622 2 34455677899999999654444331 12222233333332 12 69
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
|||+.|||++.-|+.+.+ ..|||+|+|||.+|.-
T Consensus 308 ~viadGGIR~G~DVaKAL-ALGAdaVgigrp~L~~ 341 (414)
T d1kbia1 308 EVFVDGGVRRGTDVLKAL-CLGAKGVGLGRPFLYA 341 (414)
T ss_dssp EEEEESSCCSHHHHHHHH-HHTCSEEEECHHHHHH
T ss_pred eEEecCCcCcHHHHHHHH-HcCCCEEEEcHHHHHH
Confidence 999999999999999999 7999999999977643
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.35 E-value=1.1e-06 Score=83.00 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=85.9
Q ss_pred cccccCChHHHHHHHHHHhhh-ccCcEEEEee-----c---cccc---ccHHHHHHHHHHcCCcEEEEEccccCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQA-VQVPVSCKIR-----I---YQDV---NKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~-~~iPV~vKiR-----~---~~d~---~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~ 316 (487)
++....+++.+.++.+..-.. +-+.+.++.. + +|.. .+..++++.+++.|+..+.++.-.+... .
T Consensus 105 ~s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~--~- 181 (252)
T d1h5ya_ 105 NTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT--G- 181 (252)
T ss_dssp SHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTT--C-
T ss_pred cccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCc--c-
Confidence 444556899999988876432 2222222211 0 1211 2678999999999999999965544432 3
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
...+++.++++++..++|++++|||.+.+|++++. ..|+++|.+|++++.+
T Consensus 182 ~G~d~~~~~~i~~~~~~pii~~GGv~~~~di~~l~-~~g~~gv~~gs~l~~~ 232 (252)
T d1h5ya_ 182 LGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAA-AAGADAVLAASLFHFR 232 (252)
T ss_dssp SCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEESHHHHTT
T ss_pred CCcCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHH-HCCCCEEEEhhHHHcC
Confidence 34689999999999999999999999999999987 6899999999987654
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=98.31 E-value=3.1e-06 Score=83.90 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc-------cCCCCCCCCCCCHHHHHHH
Q psy7343 257 PLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT-------VDQRGMNTGLASWEHITAV 327 (487)
Q Consensus 257 ~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt-------~~~~g~~~g~~~~~~i~~i 327 (487)
+.+.+.++.+++.. ++||++. ++. +.+.++.|.++|+|+|-| |-. +...| -|.+.+..+.++
T Consensus 136 ~~v~~~i~~ir~~~~~~~~IiAG-----NVa-T~e~~~~L~~aGaD~vkV-GIG~Gs~CTTr~~tG--vG~Pq~sAv~e~ 206 (362)
T d1pvna1 136 EWQKITIGWIREKYGDKVKVGAG-----NIV-DGEGFRYLADAGADFIKI-GIGGGSICITREQKG--IGRGQATAVIDV 206 (362)
T ss_dssp HHHHHHHHHHHHHHGGGSCEEEE-----EEC-SHHHHHHHHHHTCSEEEE-CSSCSTTBCHHHHTC--BCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccceeeecc-----ccc-CHHHHHHHHHhCCcEEEe-cccccccccchhhhc--cCCchHHHHHHH
Confidence 33445566665443 5777753 333 345567788999999999 522 22222 134556666555
Q ss_pred Hhh---------CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 328 RKA---------LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 328 ~~~---------~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
.+. .++|||+.|||++.-|+.+.| ..|||+||+|.-|-
T Consensus 207 a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAl-a~GAd~VM~G~~lA 253 (362)
T d1pvna1 207 VAERNKYFEETGIYIPVCSDGGIVYDYHMTLAL-AMGADFIMLGRYFA 253 (362)
T ss_dssp HHHHHHHHHHHSEECCEEEESCCCSHHHHHHHH-HTTCSEEEESHHHH
T ss_pred HHHHHHhhhhcccCCceeeccccCcccceeEEE-EEeccceeehhhhh
Confidence 332 369999999999999999999 79999999997544
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.31 E-value=1.5e-06 Score=82.07 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=85.8
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeec----------ccc---cccHHHHHHHHHHcCCcEEEEEccccCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI----------YQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~----------~~d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~ 315 (487)
|+....|++.+.++.+..-... +-+.+..+. +|. ..+..++.+.+++.|+..+.++.=.+.. .
T Consensus 103 gs~~~~n~~~l~~~~~~~G~~~-iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG---t 178 (253)
T d1thfd_ 103 NTAAVENPSLITQIAQTFGSQA-VVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDG---T 178 (253)
T ss_dssp SHHHHHCTHHHHHHHHHHCGGG-EEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTT---S
T ss_pred ChHHhhChHHHHHHHHHcCCee-EEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhccCCEEEEEEecccC---c
Confidence 5555678999999888774321 112221111 111 2357899999999999999996544433 3
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 316 ~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
....+++.++++++..++|++++||+.+.+|+.++. ..|+++|.+|++++.+
T Consensus 179 ~~G~d~~ll~~i~~~~~~pvi~~GGv~s~~di~~l~-~~g~~gvivgsal~~~ 230 (253)
T d1thfd_ 179 KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADAALAASVFHFR 230 (253)
T ss_dssp CSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH-HTTCSEEEESHHHHTT
T ss_pred cCCccccccccccccccceEEEecCCCCHHHHHHHH-HCCCCEEEEchHHHcC
Confidence 334689999999999999999999999999999998 6899999999987654
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.28 E-value=2.3e-06 Score=83.34 Aligned_cols=80 Identities=21% Similarity=0.173 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+..++++.+++.|+..|+++...+++. ....+.+.++++++.+++|||++||+.+.+|+.++++..++++|.+|+++
T Consensus 221 ~l~~~i~~~~~~G~GEIlltdIdrDGt---~~G~D~el~~~i~~~~~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~ 297 (323)
T d1jvna1 221 GVWELTRACEALGAGEILLNCIDKDGS---NSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMF 297 (323)
T ss_dssp EHHHHHHHHHHTTCCEEEECCGGGTTT---CSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHH
T ss_pred hHHHHhhhhhccCcceeEEEeeccccc---ccccchhHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHH
Confidence 689999999999999999976655543 34479999999999999999999999999999999988899999999987
Q ss_pred ccC
Q psy7343 366 LYN 368 (487)
Q Consensus 366 l~~ 368 (487)
..+
T Consensus 298 ~~~ 300 (323)
T d1jvna1 298 HRG 300 (323)
T ss_dssp HTT
T ss_pred HcC
Confidence 643
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.26 E-value=2e-06 Score=81.01 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=86.4
Q ss_pred cccccCChHHHHHHHHHHhhhc-cCcEEEEeec--------cccc---ccHHHHHHHHHHcCCcEEEEEccccCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRI--------YQDV---NKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~--------~~d~---~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~ 316 (487)
|+....+++++.++.+..-... -.-+.++.+. +|.. .+..++.+.+++.|+..+.++.=.+.+ ..
T Consensus 103 ~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG---~~ 179 (251)
T d1ka9f_ 103 NSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDG---TK 179 (251)
T ss_dssp CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTT---TC
T ss_pred CchhhhCHHHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccC---cc
Confidence 4455678999999888764332 1122222211 2221 267899999999999999996544433 33
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
...+++.++++.+..++|++++||+.+.+|+.++. ..|+++|++|++++.+
T Consensus 180 ~G~d~~l~~~i~~~~~~pii~~GGv~~~~dl~~l~-~~g~~gviig~al~~g 230 (251)
T d1ka9f_ 180 EGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAF-QAGAEAALAASVFHFG 230 (251)
T ss_dssp SCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEESHHHHTT
T ss_pred CCcchhHHHHHHhhcceeEEEecCCCCHHHHHHHH-HCCCCEEEEhHHHHcC
Confidence 34689999999999999999999999999999999 5899999999987754
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.25 E-value=2.6e-06 Score=84.59 Aligned_cols=184 Identities=16% Similarity=0.135 Sum_probs=106.1
Q ss_pred CCccccccccCCCchHHHHHHHHhC-CccceeccccchhhhcChhHHHHHHh----c-------CCCCCCeeeeeccCCH
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILM----S-------TPEDRPLIIQFCGNDS 215 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~G-a~l~~t~~v~~~~Ll~~~~~~~~~l~----~-------~~~~~Pv~Vqi~g~d~ 215 (487)
+-|++.+||-.+++..+.....++| .+... .. .+.+...+.+. . ......+.+-..- .+
T Consensus 45 ~iPIiss~MDtV~~~~mA~~la~~Gglgvlh-r~-------~~~e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~-~~ 115 (368)
T d2cu0a1 45 NIPILSAAMDTVTEWEMAVAMAREGGLGVIH-RN-------MGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAV-SP 115 (368)
T ss_dssp SSSEEECCCTTTCSHHHHHHHHHTTCEEEEC-SS-------SCHHHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEE-CT
T ss_pred CCCEEeCCCCCcCCHHHHHHHHHCCCeeEec-cc-------CCHHHHHHHHHhhhhhhhccccccccCccEEEEecc-Ch
Confidence 5699999999999987654444444 23221 11 11222111111 0 0111223333221 23
Q ss_pred HHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHH
Q psy7343 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLE 295 (487)
Q Consensus 216 ~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le 295 (487)
+.+.++..+++...|.|-|...+ | ..+...+.++.+++..++||++ + ++.+.... +.
T Consensus 116 ~~~~r~~~l~~aGvd~ivID~A~-------G--------h~~~~i~~lK~ir~~~~~~vIa-G----NVaT~e~~---~~ 172 (368)
T d2cu0a1 116 FDIKRAIELDKAGVDVIVVDTAH-------A--------HNLKAIKSMKEMRQKVDADFIV-G----NIANPKAV---DD 172 (368)
T ss_dssp TCHHHHHHHHHTTCSEEEEECSC-------C--------CCHHHHHHHHHHHHTCCSEEEE-E----EECCHHHH---TT
T ss_pred HHHHHHHHHHHcCCCEEEecCcc-------c--------chhhhhhhhhhhhhhcccceee-c----cccCHHHH---Hh
Confidence 33444444454445655444322 2 1233455667788888888876 3 44444332 33
Q ss_pred HcCCcEEEEEccc-------cCCCCCCCCCCCHHHHHHHHh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 296 RAGCQLLAVHGRT-------VDQRGMNTGLASWEHITAVRK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 296 ~~G~d~I~VhgRt-------~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
..|+|+|-| |-+ +...| -|.+.+..+.++.+ ..++|||+.|||++.-|+.+.| ..|||.||+|..|
T Consensus 173 l~gaD~VkV-GIG~Gs~CTTr~~tG--vG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAl-a~GAd~VMlG~~l 248 (368)
T d2cu0a1 173 LTFADAVKV-GIGPGSICTTRIVAG--VGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAI-AAGADAVMLGNLL 248 (368)
T ss_dssp CTTSSEEEE-CSSCSTTBCHHHHTC--CCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHH-HTTCSEEEESTTT
T ss_pred hhcCcceee-cccCcccccchhhcc--cccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheee-eeccceeeccchh
Confidence 469999998 532 22221 23455666666553 3489999999999999999999 7999999999865
Q ss_pred cc
Q psy7343 366 LY 367 (487)
Q Consensus 366 l~ 367 (487)
-.
T Consensus 249 Ag 250 (368)
T d2cu0a1 249 AG 250 (368)
T ss_dssp TT
T ss_pred cc
Confidence 44
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.22 E-value=1.6e-06 Score=81.04 Aligned_cols=115 Identities=22% Similarity=0.298 Sum_probs=82.1
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeec------cc--ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI------YQ--DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~------~~--d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~ 320 (487)
++....+++.+.++.+...+..- |....+- ++ ......+..+.+.+.|+..|.++.=.+... ..| .+
T Consensus 103 ~s~~~~~~~~~~~~~~~~g~~~v--v~~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt--~~G-~d 177 (239)
T d1vzwa1 103 GTAALETPEWVAKVIAEHGDKIA--VGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGT--LQG-PN 177 (239)
T ss_dssp CHHHHHCHHHHHHHHHHHGGGEE--EEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC---------C-CC
T ss_pred hHHhhhccccchhhhccCCceee--eeeccceeeecCccceeeccccchhhhhhhhccccEEEEEeecccce--ecC-Cc
Confidence 34455789999998887655432 2222221 11 123567888899999999999965444432 333 68
Q ss_pred HHHHHHHHhhCCCcEEEcCCCCCHHHHHHH--HHhcCCcEEEeccccccC
Q psy7343 321 WEHITAVRKALTIPVIANGNIQCLADVEAC--LAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 321 ~~~i~~i~~~~~iPVi~nGgI~s~~da~~~--l~~~Gad~VmiGRa~l~~ 368 (487)
++.++.+.+..++|++++|||.+.+|++++ +...|++||.+|++++.+
T Consensus 178 ~~l~~~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~g 227 (239)
T d1vzwa1 178 LELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAK 227 (239)
T ss_dssp HHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTT
T ss_pred chhhhhhhhccCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHCC
Confidence 999999999999999999999999999988 434699999999998765
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.19 E-value=4.1e-06 Score=78.54 Aligned_cols=151 Identities=12% Similarity=0.073 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHhhhccCcEEEEeeccc-c
Q psy7343 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ-D 283 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d 283 (487)
.|.+.+.++++.+.+.+|.||| |-|..-..-++ .-.+| --+.+.+.++++.+++..++|++.=+=.+. -
T Consensus 16 P~~~~s~~~l~~l~~g~d~iEi--GiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~ 93 (248)
T d1geqa_ 16 PDKQSTLNFLLALDEYAGAIEL--GIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIY 93 (248)
T ss_dssp SCHHHHHHHHHHHGGGBSCEEE--ECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCEEEE--CCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEecccccc
Confidence 3667888888877666899988 55432111110 00111 125788888999999888899887541110 0
Q ss_pred cccHHHHHHHHHHcCCcEEEE-------------------------EccccC------------------CCCCCCCCC-
Q psy7343 284 VNKTVEYARMLERAGCQLLAV-------------------------HGRTVD------------------QRGMNTGLA- 319 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~V-------------------------hgRt~~------------------~~g~~~g~~- 319 (487)
.....++++.+.++|+|++.+ -.-|.. ...+.+|.-
T Consensus 94 ~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG~~~ 173 (248)
T d1geqa_ 94 RAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGARE 173 (248)
T ss_dssp HHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-------
T ss_pred ccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEEEecccccccch
Confidence 012456666666666666655 111100 111122311
Q ss_pred -----CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 320 -----SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 320 -----~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
..+.++++|+..++||+..-||+|++|+.+++ ..+||||.||++++
T Consensus 174 ~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~-~~~ADGvIVGSaiv 224 (248)
T d1geqa_ 174 EIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLL-KEGANGVVVGSALV 224 (248)
T ss_dssp CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEECHHHH
T ss_pred hhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHH-hcCCCEEEECHHHH
Confidence 13788999999999999999999999999998 67999999999865
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.18 E-value=1.3e-05 Score=73.53 Aligned_cols=143 Identities=20% Similarity=0.198 Sum_probs=99.2
Q ss_pred Ceeeeecc-CCHHHHHHHHHhhCCcC--cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 205 PLIIQFCG-NDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 205 Pv~Vqi~g-~d~~~~~~aa~~~~~~~--d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+-.+..| .+.++.+..|+++.+.+ +.| ++-+.+. -..|+.|+....+..+.+.+. ++-|..-+
T Consensus 66 ~lLPNTAGc~tA~EAvr~A~lARE~~~t~~I--------KLEVi~D-~~~L~PD~~etl~Aae~Lv~e-GF~VlpY~--- 132 (251)
T d1xm3a_ 66 TLLPNTAGASTAEEAVRIARLAKASGLCDMI--------KVEVIGC-SRSLLPDPVETLKASEQLLEE-GFIVLPYT--- 132 (251)
T ss_dssp EEEEECTTCSSHHHHHHHHHHHHHTTCCSSE--------EECCBCC-TTTCCBCHHHHHHHHHHHHHT-TCCEEEEE---
T ss_pred EEccchHHHhhHHHHHHHHHHHHHhcCCceE--------EEEEecC-CCCcCCCHHHHHHHHHHHHhC-CcEEEEec---
Confidence 34445554 57888888888887761 222 2233332 234566666555555544433 55555543
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.+-..+++.|++.||..||--|-- - |.-.|..+...++.+++..++|||..+||-++.|+...+ +.|||+|++
T Consensus 133 ---~~D~v~ak~Le~~Gc~avMPlgsP-I--GSg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AM-ElG~daVLv 205 (251)
T d1xm3a_ 133 ---SDDVVLARKLEELGVHAIMPGASP-I--GSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAM-ELGADGVLL 205 (251)
T ss_dssp ---CSCHHHHHHHHHHTCSCBEECSSS-T--TCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHH-HTTCSEEEE
T ss_pred ---CCCHHHHHHHHHcCChhHHHhhhh-h--hcCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHH-HccCCEEEe
Confidence 133578999999999999984321 1 223466788999999999999999999999999999999 799999999
Q ss_pred cccccc
Q psy7343 362 AEGNLY 367 (487)
Q Consensus 362 GRa~l~ 367 (487)
.++.-.
T Consensus 206 NTAIA~ 211 (251)
T d1xm3a_ 206 NTAVSG 211 (251)
T ss_dssp SHHHHT
T ss_pred chhhhc
Confidence 987643
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=98.16 E-value=2.7e-07 Score=89.51 Aligned_cols=221 Identities=14% Similarity=0.106 Sum_probs=115.5
Q ss_pred hhcCCCceEEecCCCCCCHHHHHHHHHcCCCeEEccceecc---------------------ccccCc-----HHHHHHh
Q psy7343 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAH---------------------QFIADK-----KLRQEIL 127 (487)
Q Consensus 74 ~~~~~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~---------------------~l~~~~-----~~~~~~~ 127 (487)
.++ ++|+++|-...-++..+...+...|++.+.+.-+..+ ++-... +......
T Consensus 14 l~l-~nPi~~aAG~~~~~~~~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~ 92 (311)
T d1ep3a_ 14 LDL-KNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMTEKLPWL 92 (311)
T ss_dssp EEE-SSSEEECTTSSTTSTTGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHHHHTHHHHH
T ss_pred EEc-CCCcEECCCCCCCCHHHHHhhhhcCccEEEEeeEcccccCCCCCCeEeeecccccccccccchhHHHHhhhhhhhh
Confidence 344 6678888322224445655566666665655443322 111111 1122222
Q ss_pred hhCCCCCceeeeeccccCCCCCccccccccCCCc-hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHh--cCCCCC
Q psy7343 128 MSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASE-LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM--STPEDR 204 (487)
Q Consensus 128 ~~~~~e~p~~vQl~~~~~~g~~~~~lApma~~td-~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~--~~~~~~ 204 (487)
.....+.|+++|+... ....+.+-.....+ .++..+..|+| ||...........+++....++. ....+.
T Consensus 93 ~~~~~~~pii~si~~~----~~~~~~~~~~~~~~~~g~d~ielN~~---cP~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 165 (311)
T d1ep3a_ 93 NENFPELPIIANVAGS----EEADYVAVCAKIGDAANVKAIELNIS---CPNVKHGGQAFGTDPEVAAALVKACKAVSKV 165 (311)
T ss_dssp HHHCTTSCEEEEECCS----SHHHHHHHHHHHTTSTTEEEEEEECC---SEEGGGTTEEGGGCHHHHHHHHHHHHHHCSS
T ss_pred hcccCCCcccccccch----hhhHHHHHHHHHhhcccccccccccC---CCcccccccccccCHHHHHHHHHHHHhccCC
Confidence 3344578999997432 11111110000000 11122344566 77655555555667766665553 223468
Q ss_pred CeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecC--CCc-------ceeeccCccccccCChHHHHHHHHHHhhhccCcE
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIG--CPQ-------MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV 274 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~G--cP~-------~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV 274 (487)
|+.+|+..... +..+.++.+++. .+++.+.-. +.. ....++..|-+...-.....+.+..+++.+++||
T Consensus 166 p~~vkl~~~~~-~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipI 244 (311)
T d1ep3a_ 166 PLYVKLSPNVT-DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPI 244 (311)
T ss_dssp CEEEEECSCSS-CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCE
T ss_pred Ceeeeeccccc-chHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeE
Confidence 99999984211 223444444443 555544211 100 0111111111122233455667777888889999
Q ss_pred EEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 275 ~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
++++ ++.+..|+.+.+ .+|||+|+| ||..
T Consensus 245 ig~G----GI~s~~Da~~~i-~~GAd~V~i-g~~~ 273 (311)
T d1ep3a_ 245 IGMG----GVANAQDVLEMY-MAGASAVAV-GTAN 273 (311)
T ss_dssp EECS----SCCSHHHHHHHH-HHTCSEEEE-CTHH
T ss_pred EEeC----CcCCHHHHHHHH-HcCCCEEEe-cHHH
Confidence 9998 888999999998 479999999 8854
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=98.15 E-value=1e-05 Score=76.67 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHhhhc-cCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~ 282 (487)
.|.+.+.++++.+.+. +|.||| |-|..-..-++ .--++ -.+.+.+.++++.+++.. ++|++.=+=.+.
T Consensus 28 P~~~~~~~~~~~l~~~GaDiiEl--GiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~ 105 (267)
T d1qopa_ 28 PGIEQSLKIIDTLIDAGADALEL--GVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANL 105 (267)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEE--ECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE--CCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccc
Confidence 4678888988877655 899998 44432111110 00011 236778888888888774 789887542110
Q ss_pred c-cccHHHHHHHHHHcCCcEEEEE-------------------------ccccC------------------CCCCCCCC
Q psy7343 283 D-VNKTVEYARMLERAGCQLLAVH-------------------------GRTVD------------------QRGMNTGL 318 (487)
Q Consensus 283 d-~~~~~e~a~~le~~G~d~I~Vh-------------------------gRt~~------------------~~g~~~g~ 318 (487)
- ..-..++++.+.++|+|++.|- .-|.. ...+.+|.
T Consensus 106 i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~ 185 (267)
T d1qopa_ 106 VFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGA 185 (267)
T ss_dssp HHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCS
T ss_pred hhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhhhhhcccccCCc
Confidence 0 0124667777777777777761 11100 01112222
Q ss_pred C------CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 319 A------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 319 ~------~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
- ..+.++++|+..++||+...||.|++|+.+.+ ..|||||+||++++.
T Consensus 186 ~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~-~~~ADGvIVGSAivk 239 (267)
T d1qopa_ 186 ENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAV-RAGAAGAISGSAIVK 239 (267)
T ss_dssp SSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHH
T ss_pred ccccchhHHHHHHHHhhhccCCceeecccCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence 1 24889999999999999999999999999988 689999999998765
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=98.04 E-value=9e-06 Score=76.80 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeec--CCCcc---eeeccCccccc--cCChHHHHHHHHHHhhhccCcEEEEeecc---
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINI--GCPQM---VAKRGHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIY--- 281 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~--GcP~~---i~~~gr~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~--- 281 (487)
.|.+.+.++++.+.+. +|.|||-+ .-|.. +..... --+| -.+.+.+.++++.+++..++|+++-.=..
T Consensus 28 P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~-~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~ 106 (261)
T d1rd5a_ 28 PDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASV-ARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIM 106 (261)
T ss_dssp SCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHH-HHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeee-eeccccCcchhhhhhhhhcccccccCceeeeeeecchh
Confidence 4778889999877766 89999842 23331 111110 0111 23578888899999988888988743110
Q ss_pred -----------------cc--cccHHHHHHHHHHcCCcEEEEEccc-cC-----------------CCCCCCCCC-----
Q psy7343 282 -----------------QD--VNKTVEYARMLERAGCQLLAVHGRT-VD-----------------QRGMNTGLA----- 319 (487)
Q Consensus 282 -----------------~d--~~~~~e~a~~le~~G~d~I~VhgRt-~~-----------------~~g~~~g~~----- 319 (487)
+| .++..++...+.+.|.+.|.+-.-+ .. ..-+.+|..
T Consensus 107 ~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~ 186 (261)
T d1rd5a_ 107 FRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNP 186 (261)
T ss_dssp SCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCT
T ss_pred hHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhhhhccCcccccccchh
Confidence 11 2355666666667777666553211 00 011122211
Q ss_pred -CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 320 -SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 320 -~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.-+.++++++..++||+..-||.|++|++++. +.|||||.||.+++.
T Consensus 187 ~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~-~~gaDGvIVGSaiv~ 234 (261)
T d1rd5a_ 187 RVESLIQEVKKVTNKPVAVGFGISKPEHVKQIA-QWGADGVIIGSAMVR 234 (261)
T ss_dssp HHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH-HTTCSEEEECHHHHH
T ss_pred HHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence 13788999999999999999999999999998 679999999998764
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.93 E-value=7e-05 Score=68.24 Aligned_cols=109 Identities=25% Similarity=0.417 Sum_probs=76.8
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEc----------------------
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG---------------------- 306 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vhg---------------------- 306 (487)
|-+.+.||..+.++++ .+++||..|.|++- .--++.|++.|+|++.=+.
T Consensus 40 GvaRm~dp~~i~ei~~----~vsipvmak~righ-----~~eaqiLe~~~vd~ideseVLTpad~~~hi~k~~fkvpfVc 110 (254)
T d1znna1 40 GVARMADPTVIEEVMN----AVSIPVMAKVRIGH-----YVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVC 110 (254)
T ss_dssp CCCCCCCHHHHHHHHH----HCSSCEEEEEETTC-----HHHHHHHHHHTCSEEEEETTSCCSCSSCCCCGGGCSSCEEE
T ss_pred CcccCCCHHHHHHHHH----hcccccccccCCCc-----hHHHHhHHhhCCCcccHhHhcccccHHHhhcccceeeeeeC
Confidence 4455789999888665 56899999999873 2346788899998885311
Q ss_pred --cc--------cC------CCCCCCCCC------------------------------------CHHHHHHHHh--hCC
Q psy7343 307 --RT--------VD------QRGMNTGLA------------------------------------SWEHITAVRK--ALT 332 (487)
Q Consensus 307 --Rt--------~~------~~g~~~g~~------------------------------------~~~~i~~i~~--~~~ 332 (487)
|+ .+ .+| ..|.. .++++.++.+ .+.
T Consensus 111 g~r~Lgealrri~EgAamIrtkG-eagtgnvveav~h~R~i~~~i~~~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~ 189 (254)
T d1znna1 111 GCRDLGEAARRIAEGASMLRTKG-EPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLP 189 (254)
T ss_dssp EESSHHHHHHHHHTTCSEEEECC-CTTSCCCHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCS
T ss_pred CCCccchhHHHHHHHHHHHHhCC-ccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCchHHHHHHHHhCCCC
Confidence 11 00 000 11111 2355556654 367
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+|+++.|||.|+.|+..++ +.|||+|.+|+|+..-
T Consensus 190 v~~~~~~Gi~tpadaa~~M-elG~dgV~v~s~I~~s 224 (254)
T d1znna1 190 VVNFAAGGVTTPADAALMM-HLGADGVFVGSGIFKS 224 (254)
T ss_dssp SEEEEESSCCSHHHHHHHH-HTTCSEEEECGGGGGS
T ss_pred ceEEecCCCCChhhHHHHH-HcCCCEEEEcchhhcC
Confidence 8999999999999999999 7999999999986543
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=97.90 E-value=4e-06 Score=81.60 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=69.8
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHH-----------HHHHHH
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD-----------VEACLA 352 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~d-----------a~~~l~ 352 (487)
+.++.+.++.+++.|||.|++-.=.+...+.+....+++.++++.+.+.+|+.+.|||+|.+| |.+++
T Consensus 47 iGdP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll- 125 (323)
T d1jvna1 47 LGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYF- 125 (323)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHH-
Confidence 347899999999999999998332221111122334679999999999999999999999654 67888
Q ss_pred hcCCcEEEeccccccCcccccC
Q psy7343 353 QTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 353 ~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
..|||-|.+|++++.||.++.+
T Consensus 126 ~~GadKVvI~T~ai~~p~~~~e 147 (323)
T d1jvna1 126 RSGADKVSIGTDAVYAAEKYYE 147 (323)
T ss_dssp HHTCSEEEECHHHHHHHHHHHH
T ss_pred HcCCCeEEechHHhhChHHHHH
Confidence 7899999999999988887643
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=97.90 E-value=5.2e-06 Score=78.23 Aligned_cols=85 Identities=20% Similarity=0.281 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.++++.+++.|+|.+++-.=.+. . .....+.+.++++.+.+.+|+.+.|||++.+++++++ ..|||.|.+|+.+
T Consensus 31 dP~~~a~~~~~~g~dei~ivDld~~-~--~~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l-~~Ga~kviigs~~ 106 (253)
T d1thfd_ 31 DPVELGKFYSEIGIDELVFLDITAS-V--EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELI-LRGADKVSINTAA 106 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCS-S--SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH-HTTCSEEEESHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEeeccc-c--cCcccHHHHHHHHHhccCccceeecccccchhhhhHH-hcCCCEEEEChHH
Confidence 6889999999999999998321111 1 1123467889999999999999999999999999999 7899999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||.++.+
T Consensus 107 ~~n~~~l~~ 115 (253)
T d1thfd_ 107 VENPSLITQ 115 (253)
T ss_dssp HHCTHHHHH
T ss_pred hhChHHHHH
Confidence 999988654
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.85 E-value=9.9e-05 Score=68.11 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=96.1
Q ss_pred eeeeecc-CCHHHHHHHHHhhCCcC---cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 206 LIIQFCG-NDSKNLTEAAKLAEPHC---DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 206 v~Vqi~g-~d~~~~~~aa~~~~~~~---d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
+-.+..| .+.++..+.+++..+.+ +.|.+. +.+. --.|+.|+-...+..+.+.+. ++-|..-+
T Consensus 68 ~LPNTAGc~taeeAv~~A~larE~~~~~~~iKLE--------Vi~d-~~~L~Pd~~etl~Aa~~Lv~e-gF~Vlpy~--- 134 (243)
T d1wv2a_ 68 ILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLE--------VLAD-QKTLFPNVVETLKAAEQLVKD-GFDVMVYT--- 134 (243)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEEC--------CBSC-TTTCCBCHHHHHHHHHHHHTT-TCEEEEEE---
T ss_pred ecccccccccHHHHHHHHHHHHHHhCCCceEEEe--------eecc-ccccCCcHHHHHHHHHHhhcC-ceEEEecc---
Confidence 3445554 57888888888887752 333332 1111 123455665555554444332 44454433
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.+-.-+++.+++.||..||--|- .-|.-.|..+...++.+++..++|||..+||.++.|+..++ +.|||+|.+
T Consensus 135 ---~~D~v~ak~le~~Gc~~vMplgs---PIGsg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AM-ElG~dgVLv 207 (243)
T d1wv2a_ 135 ---SDDPIIARQLAEIGCIAVMPLAG---LIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAM-ELGCEAVLM 207 (243)
T ss_dssp ---CSCHHHHHHHHHSCCSEEEECSS---STTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHH-HHTCSEEEE
T ss_pred ---CCCHHHHhHHHHcCceeeeeccc---ccccccccccHHHHHhccccCCcceEeecccCCHHHHHHHH-HccCCEEEe
Confidence 23356789999999999998332 11223456677888999999999999999999999999999 799999999
Q ss_pred cccccc
Q psy7343 362 AEGNLY 367 (487)
Q Consensus 362 GRa~l~ 367 (487)
++|...
T Consensus 208 nsaIa~ 213 (243)
T d1wv2a_ 208 NTAIAH 213 (243)
T ss_dssp SHHHHT
T ss_pred chHhhc
Confidence 998643
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=97.82 E-value=7.6e-06 Score=76.97 Aligned_cols=86 Identities=21% Similarity=0.323 Sum_probs=71.8
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.+.++.+.+.|+|.+++-.-.... .....+++.++++.+.+.+|+.+.|||+|.+++++++ ..||+.|.+|+.
T Consensus 30 gdP~~~a~~~~~~g~dei~iiDl~~~~---~~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll-~~Ga~kVii~s~ 105 (251)
T d1ka9f_ 30 GDPVEAARAYDEAGADELVFLDISATH---EERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLL-LSGADKVSVNSA 105 (251)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSST---TCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHH-HHTCSEEEECHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeccccc---ccchhHHHHHHHHHhccCcchheeccccCHHHHHHHH-HcCCCEEEECch
Confidence 368899999999999999984322111 1123467889999999999999999999999999999 799999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||.++.+
T Consensus 106 ~~~n~~~i~~ 115 (251)
T d1ka9f_ 106 AVRRPELIRE 115 (251)
T ss_dssp HHHCTHHHHH
T ss_pred hhhCHHHHHH
Confidence 9999988753
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.81 E-value=8.4e-06 Score=76.74 Aligned_cols=85 Identities=24% Similarity=0.356 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.+.++.+++.|+|.++|-.-.... .....+++.++++.+.+.+|+.+.|||++.+++++++ ..||+.|.+|+.+
T Consensus 33 dP~~~a~~~~~~gadei~ivDl~~~~---~~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll-~~G~~kVii~s~~ 108 (252)
T d1h5ya_ 33 DPVEMAVRYEEEGADEIAILDITAAP---EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLF-RAGADKVSVNTAA 108 (252)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCT---TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH-HHTCSEEEESHHH
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccc---cccccHHHHHHHHHhhcCCcceeecccchhhhhhhHh-hcCCcEEEecccc
Confidence 68899999999999999884332221 1224567899999999999999999999999999999 7899999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||.++.+
T Consensus 109 ~~~~~~~~~ 117 (252)
T d1h5ya_ 109 VRNPQLVAL 117 (252)
T ss_dssp HHCTHHHHH
T ss_pred cCCcchHHH
Confidence 999988753
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=97.81 E-value=4e-05 Score=81.53 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=80.0
Q ss_pred CChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC------CCCCCCCHHHHHH
Q psy7343 254 DDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG------MNTGLASWEHITA 326 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g------~~~g~~~~~~i~~ 326 (487)
.+++.+.+++..+|+.. +.||.+|+-.+ ....+++..+.++|+|.|+|.|....... .+.|.+....+.+
T Consensus 553 ~siedL~~~I~~Lr~~~~~~pv~vKl~~~---~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~ 629 (771)
T d1ea0a2 553 YSIEDLAQLIYDLKQINPDAKVTVKLVSR---SGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSE 629 (771)
T ss_dssp SSHHHHHHHHHHHHHHCTTCEEEEEEECC---TTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEECCc---CcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHH
Confidence 46788888898899876 79999998432 34567777778899999999876322110 0112222234444
Q ss_pred HHhhC-------CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 327 VRKAL-------TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 327 i~~~~-------~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.+.+ ++.+++.|++.|+.|+.+++ ..|||+|.+||++|-
T Consensus 630 ~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~-aLGAD~v~~gt~~m~ 676 (771)
T d1ea0a2 630 VHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAA-MLGAEEFGIGTASLI 676 (771)
T ss_dssp HHHHHHTTTCTTTSEEEEESSCCSHHHHHHHH-HTTCSEEECCHHHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCHHHHHHHH-HhCCCchHHhHHHHH
Confidence 43332 69999999999999999999 799999999999874
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=97.76 E-value=9e-05 Score=69.94 Aligned_cols=150 Identities=14% Similarity=0.124 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHhhhccCcEEEEeecccc-
Q psy7343 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD- 283 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d- 283 (487)
.|.+.+.++++.+.+.+|.||| |-|..-..-++ .-.+| --+.+.+.++++.+++..++|+++=+-...-
T Consensus 27 P~~~~~~~~l~~l~~gaDiiEl--GiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~ 104 (271)
T d1ujpa_ 27 PSREGFLQAVEEVLPYADLLEI--GLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVL 104 (271)
T ss_dssp SCHHHHHHHHHHHGGGCSSEEE--ECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCEEEe--CCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEeechhhh
Confidence 4677888888877667899988 55432111110 00111 2367888899999998889999885422100
Q ss_pred cccHHHHHHHHHHcCCcEEEE-------------------------Ec-cccC---------C--------CCCCCCC--
Q psy7343 284 VNKTVEYARMLERAGCQLLAV-------------------------HG-RTVD---------Q--------RGMNTGL-- 318 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~V-------------------------hg-Rt~~---------~--------~g~~~g~-- 318 (487)
..-..++++.+.++|+|++.| -. -|.. . ..+.+|.
T Consensus 105 ~~G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~ 184 (271)
T d1ujpa_ 105 AWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRE 184 (271)
T ss_dssp HHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC--------
T ss_pred hCCchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCcchhhhhcccCccCccc
Confidence 012355666666667777665 11 1100 0 0112222
Q ss_pred ----CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 319 ----ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 319 ----~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
..-+.++++|+..++||...=||.+++|+.. . .+||||.||++++.
T Consensus 185 ~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~-~--~~ADGvIVGSAiV~ 234 (271)
T d1ujpa_ 185 RLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQ-A--AVADGVVVGSALVR 234 (271)
T ss_dssp ----CCHHHHHHHHTTCCSCEEEESCCCSHHHHHH-H--TTSSEEEECHHHHH
T ss_pred cchHHHHHHHHhhhccccCCeEEeCCCCCHHHHHH-h--CCCCEEEEcHHHHH
Confidence 1248899999999999999999999999975 3 38999999998764
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.74 E-value=1.6e-05 Score=74.24 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=66.8
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH-----hcCCcEEE
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA-----QTGVAGVM 360 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~-----~~Gad~Vm 360 (487)
+..++.+.+++.|+..+.++.=.+... ..| .|++.++++++..++|++++|||.+.+|+.++.+ ..|++||.
T Consensus 145 ~~~~~~~~~~~~g~~eii~~dId~dGt--~~G-~d~~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvi 221 (241)
T d1qo2a_ 145 DPVSLLKRLKEYGLEEIVHTEIEKDGT--LQE-HDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTTTCCEEEEEETTHHHH--TCC-CCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred ehhHHHHHhhccccceEEEeehhhhhh--ccc-cchhhhhhhhccCCceEEEECCCCCHHHHHHHHHccccccCCEeeEE
Confidence 678999999999999999965443332 333 6899999999999999999999999999999974 24699999
Q ss_pred eccccccC
Q psy7343 361 TAEGNLYN 368 (487)
Q Consensus 361 iGRa~l~~ 368 (487)
+|++++.+
T Consensus 222 vG~al~~g 229 (241)
T d1qo2a_ 222 VGRAFLEG 229 (241)
T ss_dssp ECHHHHTT
T ss_pred EHHHHHCC
Confidence 99998644
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=97.69 E-value=0.00022 Score=64.77 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=91.5
Q ss_pred HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---cccccHHHHHHH
Q psy7343 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDVNKTVEYARM 293 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~d~~~~~e~a~~ 293 (487)
...++...++...|.||+=+. +|..+..+|+.+.+-++.+++.++- ..+|+-+. .+.++....++.
T Consensus 72 k~~e~~~ai~~GA~EiD~V~n----------~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~ 140 (211)
T d1ub3a_ 72 KALEAALACARGADEVDMVLH----------LGRAKAGDLDYLEAEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEA 140 (211)
T ss_dssp HHHHHHHHHHTTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEeec----------cchhhcCCHHHHHHHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHH
Confidence 334555566666888886321 2333335899999888888887752 34565442 144567788888
Q ss_pred HHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 294 LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 294 le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+.++|+|+|--+ .|+..+.+..+.++.+++.+ ++.|-++|||+|.+++.+++ +.|++.+...+|
T Consensus 141 a~~aGadfiKTS------TG~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l-~aGa~riGtSs~ 206 (211)
T d1ub3a_ 141 AIRGGADFLKTS------TGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRML-KAGASRLGTSSG 206 (211)
T ss_dssp HHHHTCSEEECC------CSSSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH-HTTCSEEEETTH
T ss_pred HHHhccceEEec------CCCCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHH-HHhhhHhccCcH
Confidence 999999999652 12233457788888888776 57888999999999999999 689998776654
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=97.64 E-value=0.00034 Score=64.14 Aligned_cols=130 Identities=15% Similarity=0.259 Sum_probs=89.8
Q ss_pred HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---cccccHHHHHHH
Q psy7343 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDVNKTVEYARM 293 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~d~~~~~e~a~~ 293 (487)
...++...++..+|.||+=+. ++.....+|+.+.+-++++++..+-. .+|+-+. .+.++....++.
T Consensus 72 K~~E~~~Ai~~GAdEID~Vin----------~~~l~~g~~~~v~~ei~~v~~~~~~~-~lKVIlEt~~L~~~ei~~a~~~ 140 (225)
T d1mzha_ 72 KVKEAVEAVRDGAQELDIVWN----------LSAFKSEKYDFVVEELKEIFRETPSA-VHKVIVETPYLNEEEIKKAVEI 140 (225)
T ss_dssp HHHHHHHHHHTTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHTCTTS-EEEEECCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEeec----------hhhhhcccHHHHHHHHHHHHHhccCc-eeehhhhhccCCHHHHHHHHHH
Confidence 344555666667888886421 12222347888888788887766422 3455442 133467788888
Q ss_pred HHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 294 LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 294 le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+.++|+|+|--+ - |...+.+..+.++.+++.+ ++.|-++|||+|.+++.+++ +.|++.+....+
T Consensus 141 a~~aGadfiKTS-T-----G~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i-~~Ga~RiGtSs~ 206 (225)
T d1mzha_ 141 CIEAGADFIKTS-T-----GFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMI-EAGADRIGTSSG 206 (225)
T ss_dssp HHHHTCSEEECC-C-----SCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHH-HTTCSEEEESCH
T ss_pred HHHcccceEeec-C-----CCCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHH-HhchhheecCcH
Confidence 999999999652 1 1223446778888888776 68899999999999999999 689998766654
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=97.54 E-value=0.00015 Score=77.18 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=77.9
Q ss_pred CChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC------CCCCCCCHHHHHH
Q psy7343 254 DDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG------MNTGLASWEHITA 326 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g------~~~g~~~~~~i~~ 326 (487)
.+++.+.+++..+|+.. +.||.+|+-.. .....++..+.++|+|.|+|.|....... .+.|.+....+.+
T Consensus 580 ysiedL~q~I~~Lr~~~~~~pv~vKl~~~---~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~ 656 (809)
T d1ofda2 580 YSIEDLAQLIYDLHQINPEAQVSVKLVAE---IGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTE 656 (809)
T ss_dssp SSHHHHHHHHHHHHHHCTTSEEEEEEECS---TTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeee---cChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHH
Confidence 35788888898898865 68999998432 23455666666799999999876321100 0112222233344
Q ss_pred HHhh-----C--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 327 VRKA-----L--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 327 i~~~-----~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+.+. + ++.+++.|++.|+.|+.+++ ..|||.|.+||++|--
T Consensus 657 a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~-aLGAD~v~~gt~~l~a 704 (809)
T d1ofda2 657 VHRVLMENQLRDRVLLRADGGLKTGWDVVMAA-LMGAEEYGFGSIAMIA 704 (809)
T ss_dssp HHHHHHHTTCGGGCEEEEESSCCSHHHHHHHH-HTTCSEEECSHHHHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCHHHHHHHH-HhCCCchhHhHHHHHH
Confidence 3332 2 69999999999999999999 7999999999997654
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=0.00039 Score=64.67 Aligned_cols=128 Identities=22% Similarity=0.309 Sum_probs=89.1
Q ss_pred HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---cccccHHHHHHHH
Q psy7343 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDVNKTVEYARML 294 (487)
Q Consensus 218 ~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~d~~~~~e~a~~l 294 (487)
..++...++..+|.||+=+. +|.....+|+.+.+-++++++.++ ...+|+-+. .+.++...+++.+
T Consensus 106 ~~Ea~~Ai~~GAdEID~Vin----------~~~l~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~e~~~a~~ia 174 (251)
T d1o0ya_ 106 AHEAIFAVESGADEIDMVIN----------VGMLKAKEWEYVYEDIRSVVESVK-GKVVKVIIETCYLDTEEKIAACVIS 174 (251)
T ss_dssp HHHHHHHHHHTCSEEEEECC----------HHHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEec----------cchhhcCCHHHHHHHHHHHHHHhc-ccceeeeecccccCcHHHHHHHHHH
Confidence 34555556666888886322 122333589999888888888774 345566442 1334567788889
Q ss_pred HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.++|+|+|--+ . |+..+.+..+.++.+++.+ ++.|=++|||+|.+++.+++ ..||+.+...+
T Consensus 175 ~~aGadfvKTS-T-----Gf~~~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i-~aGa~riGtSs 238 (251)
T d1o0ya_ 175 KLAGAHFVKTS-T-----GFGTGGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMI-MYGADRIGTSS 238 (251)
T ss_dssp HHTTCSEEECC-C-----SSSSCCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH-HTTCSEEEESC
T ss_pred HHhCcceeecc-C-----CCCCCCcCHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHH-HHhhHHhCCCc
Confidence 99999998652 1 2234557778888887765 57788999999999999999 79999875544
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.49 E-value=6.1e-05 Score=69.96 Aligned_cols=84 Identities=23% Similarity=0.219 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.++++.+.+.|++.++|-.=.+. ..+..+.+.++++.+.+.+|+.+.|||+|.+++++++ ..|++.|.+++.+
T Consensus 32 dP~~~a~~~~~~ga~~l~i~DLd~~----~~~~~~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll-~~Ga~kVvi~s~~ 106 (239)
T d1vzwa1 32 SPLEAALAWQRSGAEWLHLVDLDAA----FGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAAL-ATGCTRVNLGTAA 106 (239)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHH----HTSCCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHH-HTTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEeeccc----ccccchHHHHHHHHhhcCcceEeecccccchhhhhhh-ccccccchhhHHh
Confidence 6889999999999999998432111 1223578999999999999999999999999999999 7999999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||.++.+
T Consensus 107 ~~~~~~~~~ 115 (239)
T d1vzwa1 107 LETPEWVAK 115 (239)
T ss_dssp HHCHHHHHH
T ss_pred hhccccchh
Confidence 999998763
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=97.48 E-value=0.0007 Score=62.63 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=96.9
Q ss_pred CCCeeeeecc-CCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEe
Q psy7343 203 DRPLIIQFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~g-~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKi 278 (487)
..|+...+.. ..++++.++++.+++ .|..+-+..|. .+++.-.+.++++++.+ ++.+.+-.
T Consensus 5 ~vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~---------------~~~~~D~~~v~~ir~~~g~~~~l~vDa 69 (244)
T d2chra1 5 AIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGF---------------RSPQDDLIHMEALSNSLGSKAYLRVDV 69 (244)
T ss_dssp EEEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSS---------------SCHHHHHHHHHHHHHHTTTTSEEEEEC
T ss_pred cEEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCC---------------CCHHHHHHHHHHHHHhcCCCceEEEeC
Confidence 3577766664 445677888887765 46666554443 13333345566777776 45555544
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
--+|+..+..++++.+++.++.++-= --...+++.++++++.+++||.+.-.+.+..++.++++...+|.
T Consensus 70 N~~~~~~~A~~~~~~l~~~~i~~iEe----------P~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~ 139 (244)
T d2chra1 70 NQAWDEQVASVYIPELEALGVELIEQ----------PVGRENTQALRRLSDNNRVAIMADESLSTLASAFDLARDRSVDV 139 (244)
T ss_dssp TTCCCTHHHHHHHHHHHTTTCCEEEC----------CSCSSCHHHHHHHHHHCSSEEEESSSCCSHHHHHHHHTTTCCSE
T ss_pred CCCcchHHHHHHHHHHhhhhHHHHhh----------hhhhccchhhhhhccceeeeeeecccccccchhhhhhhcceeEE
Confidence 44677888999999999999876632 11234788999999999999999999999999999997667898
Q ss_pred EEecc
Q psy7343 359 VMTAE 363 (487)
Q Consensus 359 VmiGR 363 (487)
|++--
T Consensus 140 v~~d~ 144 (244)
T d2chra1 140 FSLKL 144 (244)
T ss_dssp ECCCH
T ss_pred Eeecc
Confidence 87653
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.47 E-value=0.00053 Score=63.53 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=96.2
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.|+-.|=+--|+.+..++...= +|+|=|.+++ -+.+.+.++++..+ ..++-+.+-+
T Consensus 102 ~~~PiLrKDFIid~~QI~ea~~~G---ADaiLLI~~~---------------L~~~~l~~l~~~a~-~lgl~~LvEv--- 159 (247)
T d1a53a_ 102 VSIPILMKDFIVKESQIDDAYNLG---ADTVLLIVKI---------------LTERELESLLEYAR-SYGMEPLIEI--- 159 (247)
T ss_dssp CCSCEEEESCCCSHHHHHHHHHHT---CSEEEEEGGG---------------SCHHHHHHHHHHHH-TTTCCCEEEE---
T ss_pred cccceeecccccChHHHHHHHHhh---cchhhhhhhh---------------ccHHHHHHHHHHHH-HHhhhHHhhc---
Confidence 357888886655776655544322 3444333222 14566777777554 4577777765
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
.+..| ++...+.|++.|.|-.|.-. +-..+.+...++...+ +..+|+-+||.|.+|+.++. ..|+|+|
T Consensus 160 ---h~~~E-l~~a~~~~a~iIGINnRnL~-----t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~-~~G~dav 229 (247)
T d1a53a_ 160 ---NDEND-LDIALRIGARFIGINSRDLE-----TLEINKENQRKLISMIPSNVVKVAESGISERNEIEELR-KLGVNAF 229 (247)
T ss_dssp ---CSHHH-HHHHHHTTCSEEEEESBCTT-----TCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHH-HTTCCEE
T ss_pred ---CCHHH-HHHHHhCCCCeEeeeccChh-----hhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHH-HCCCCEE
Confidence 23344 45556789999999767432 2345677777777776 78899999999999999987 7899999
Q ss_pred EeccccccCccc
Q psy7343 360 MTAEGNLYNPAL 371 (487)
Q Consensus 360 miGRa~l~~P~l 371 (487)
.||.++|.+|+.
T Consensus 230 LIGeaLmk~~d~ 241 (247)
T d1a53a_ 230 LIGSSLMRNPEK 241 (247)
T ss_dssp EECHHHHHCTTH
T ss_pred EECHHHcCCCch
Confidence 999999998864
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.43 E-value=0.00025 Score=64.12 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+..+ +....+.|+|++.+..--.........+..|+.++++.+..++||++-||| +.+++.+++ .+|++||.+.+++
T Consensus 108 ~~~e-~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~~~Pv~AiGGI-~~~ni~~~~-~~Ga~gvAvis~I 184 (206)
T d1xi3a_ 108 SLEE-ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGI-NKDNAREVL-KTGVDGIAVISAV 184 (206)
T ss_dssp SHHH-HHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSC-CTTTHHHHH-TTTCSEEEESHHH
T ss_pred CHHH-HHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHH-HhCCCEEEEhHHH
Confidence 4444 456677899999994321111101123457899999999999999999999 677899988 8999999999999
Q ss_pred ccCcc
Q psy7343 366 LYNPA 370 (487)
Q Consensus 366 l~~P~ 370 (487)
+..++
T Consensus 185 ~~~~d 189 (206)
T d1xi3a_ 185 MGAED 189 (206)
T ss_dssp HTSSS
T ss_pred HCCCC
Confidence 87654
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=97.27 E-value=0.002 Score=59.35 Aligned_cols=136 Identities=14% Similarity=0.216 Sum_probs=93.2
Q ss_pred CCCeeeeeccCC-HHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEe
Q psy7343 203 DRPLIIQFCGND-SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~g~d-~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKi 278 (487)
..|+...+.+.+ +++..++++.+++ .+..+-|-.|- .+++.-.+.++++++.+ ++.+.+-.
T Consensus 5 ~ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~---------------~~~~~Di~~v~~ir~~~g~~~~l~vDa 69 (243)
T d1nu5a1 5 SIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGA---------------RTPAQDLEHIRSIVKAVGDRASVRVDV 69 (243)
T ss_dssp EEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSS---------------SCHHHHHHHHHHHHHHHGGGCEEEEEC
T ss_pred ceEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCC---------------CCHHHHHHHHHHHHHHhCcccceEEEC
Confidence 467777776444 5566677776654 46655554332 13443344555566555 23444433
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
--+|+.++..++++.+++.++.++-= -....+++..+++++..++||.+...+.+..++.++++...+|.
T Consensus 70 N~~~~~~~A~~~~~~l~~~~~~~iEe----------P~~~~~~~~~~~l~~~~~ipIa~gE~~~~~~~~~~~i~~~~~d~ 139 (243)
T d1nu5a1 70 NQGWDEQTASIWIPRLEEAGVELVEQ----------PVPRANFGALRRLTEQNGVAILADESLSSLSSAFELARDHAVDA 139 (243)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCCEEEC----------CSCTTCHHHHHHHHHHCSSEEEESTTCCSHHHHHHHHHTTCCSE
T ss_pred CCCccchhHHHHHHHhcchhhhhhhh----------hhhhccccccccchhccccccccccccccchhhhhccccccccc
Confidence 33567788899999999999887732 11234688899999999999999999999999999997677898
Q ss_pred EEecc
Q psy7343 359 VMTAE 363 (487)
Q Consensus 359 VmiGR 363 (487)
+++--
T Consensus 140 ~~~d~ 144 (243)
T d1nu5a1 140 FSLKL 144 (243)
T ss_dssp EEECH
T ss_pred ccccc
Confidence 87653
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=97.13 E-value=0.0029 Score=58.09 Aligned_cols=135 Identities=14% Similarity=0.214 Sum_probs=92.8
Q ss_pred CCCeeeeeccCCHH-HHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEe
Q psy7343 203 DRPLIIQFCGNDSK-NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~-~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKi 278 (487)
..||...+...+++ +..++.+.+++ .+..+-|-+|. .+.+.-.+.++++++.+ ++.+.+-.
T Consensus 5 ~ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~---------------~~~~~Di~~i~~ir~~~g~~~~l~vDa 69 (242)
T d1muca1 5 SLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGA---------------NPVEQDLKHVVTIKRELGDSASVRVDV 69 (242)
T ss_dssp EEEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSS---------------SCHHHHHHHHHHHHHHHGGGSEEEEEC
T ss_pred eEEEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECC---------------CCHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 46787777755554 45677777754 46655554442 12333334455555554 34455544
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
.-+|+..+..++++.+++.|+.+|- + + . ...+++..+++++.+++||.+...+.+..++.++++...+|.
T Consensus 70 N~~~~~~~A~~~~~~l~~~~i~~iE-------e-P-~-~~~d~~~~~~L~~~~~~pIa~~E~~~~~~~~~~~i~~~~~d~ 139 (242)
T d1muca1 70 NQYWDESQAIRACQVLGDNGIDLIE-------Q-P-I-SRINRGGQVRLNQRTPAPIMADESIESVEDAFSLAADGAASI 139 (242)
T ss_dssp TTCBCHHHHHHHHHHHHHTTCCCEE-------C-C-B-CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSE
T ss_pred CCCCcHHHHHHHHHHhhhhhHHHhh-------c-c-h-hhhhhhhhhhhhhhhhheeecccccccccchhhhhhcccccc
Confidence 3356777889999999999988762 1 1 1 234688899999999999999999999999999997666888
Q ss_pred EEec
Q psy7343 359 VMTA 362 (487)
Q Consensus 359 VmiG 362 (487)
+++-
T Consensus 140 ~~~d 143 (242)
T d1muca1 140 FALK 143 (242)
T ss_dssp EEEC
T ss_pred cccc
Confidence 8764
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00068 Score=63.01 Aligned_cols=137 Identities=15% Similarity=0.155 Sum_probs=86.0
Q ss_pred HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeeccc---ccccH-HHHH
Q psy7343 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQ---DVNKT-VEYA 291 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~---d~~~~-~e~a 291 (487)
...++...++..+|.||+=+. ++.....+++.+.+-++.+++.+ .-++.+|+-+.. ..++. ....
T Consensus 86 K~~E~~~Ai~~GAdEID~Vin----------~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~ 155 (250)
T d1p1xa_ 86 ALAETRAAIAYGADEVDVVFP----------YRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKAS 155 (250)
T ss_dssp HHHHHHHHHHHTCSEEEEECC----------HHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEeec----------chhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHH
Confidence 445555666666888885321 12222346888887777777764 344566654421 12233 3456
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-------CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-------TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-------~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+.+.++|+|+|--+ .|+..+.+..+.++.+++.+ ++.|-++|||+|.+++.+++ +.|++. +|..
T Consensus 156 ~ia~~aGadFvKTS------TG~~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i-~~ga~~--iG~~ 226 (250)
T d1p1xa_ 156 EISIKAGADFIKTS------TGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYL-AIADEL--FGAD 226 (250)
T ss_dssp HHHHHTTCSEEECC------CSCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHH-HHHHHH--HCTT
T ss_pred HHHHHcCcCeEEec------CCcCCCCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHH-HHHHHH--hCcc
Confidence 88889999998652 12233445665555544432 68899999999999999999 567764 3444
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
.+ +|..|+
T Consensus 227 ~~-~~~~fR 234 (250)
T d1p1xa_ 227 WA-DARHYR 234 (250)
T ss_dssp SC-STTTBC
T ss_pred cc-ccCcee
Confidence 43 788887
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.00021 Score=66.26 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.+.++.+++.|+|.++|--=.... ..+..+...+..+++ ..+|+.+.|||+|.+++++++ ..|+|.|.+++.
T Consensus 30 ~dP~~~a~~~~~~g~~~l~ivDLda~~---~~~~~~~~~~~~~~~-~~~pl~~gGGI~s~~~~~~~~-~~Ga~kVvi~s~ 104 (241)
T d1qo2a_ 30 KDPVELVEKLIEEGFTLIHVVDLSNAI---ENSGENLPVLEKLSE-FAEHIQIGGGIRSLDYAEKLR-KLGYRRQIVSSK 104 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHH---HCCCTTHHHHHHGGG-GGGGEEEESSCCSHHHHHHHH-HTTCCEEEECHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEeccccc---ccCCcchhheehhcc-cccchhhhhhhhhhhhhhhcc-ccccceEecCcc
Confidence 478999999999999999883211111 112234455555554 458999999999999999999 789999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
++.||.+..
T Consensus 105 ~~~~~~~~~ 113 (241)
T d1qo2a_ 105 VLEDPSFLK 113 (241)
T ss_dssp HHHCTTHHH
T ss_pred cccCchhhh
Confidence 999998864
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.98 E-value=0.0033 Score=57.71 Aligned_cols=128 Identities=18% Similarity=0.162 Sum_probs=78.6
Q ss_pred HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---cccccHHHHHHH
Q psy7343 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDVNKTVEYARM 293 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~d~~~~~e~a~~ 293 (487)
...++...++..+|.||+=+- ++.....+++.+.++++.++. .+ ..+|+-+. .+.++...+++.
T Consensus 90 k~~E~~~Ai~~GAdEID~Vin----------~~~~~~~~~~ev~~~~~~~~~-~g--~~lKVIlEt~~L~~~~i~~a~~~ 156 (234)
T d1n7ka_ 90 KLVEAQTVLEAGATELDVVPH----------LSLGPEAVYREVSGIVKLAKS-YG--AVVKVILEAPLWDDKTLSLLVDS 156 (234)
T ss_dssp HHHHHHHHHHHTCCEEEECCC----------GGGCHHHHHHHHHHHHHHHHH-TT--CEEEEECCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEec----------hhhhhhhhHHHHHHHHHHHhc-cC--ceEEEEEeccccchHHHHHHHHH
Confidence 345555566666888886321 111112346667777765443 34 34554442 244567778888
Q ss_pred HHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH---hhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 294 LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR---KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 294 le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~---~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
..++|+|+|--+ | |.+...+..+.+..+. ...++.|-++|||+|.+|+.+++ +.|++.+....+
T Consensus 157 a~~aGadFVKTS--T----G~~~~gat~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i-~aGa~rIGtSs~ 223 (234)
T d1n7ka_ 157 SRRAGADIVKTS--T----GVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAV-GAGADIIGTSSA 223 (234)
T ss_dssp HHHTTCSEEESC--C----SSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHH-HTTCSEEEETTH
T ss_pred HHHhhhhheeec--c----cccCCCCCHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHH-HccCceeecchH
Confidence 889999998642 1 1122233343333333 33468899999999999999999 689998765554
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.97 E-value=0.0021 Score=60.63 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHhhC-CcCcEEEeecCCCcceee-------ccCccc-cccCChHHHHHHHHHHhhhcc--CcEEEEeecc
Q psy7343 213 NDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAK-------RGHYGA-YLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIY 281 (487)
Q Consensus 213 ~d~~~~~~aa~~~~-~~~d~IdiN~GcP~~i~~-------~gr~G~-~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~ 281 (487)
.+|+++++.|+.+. +.|+++-++.+.+..... +..... ....+.+.-.+.++++|+.++ +.+.+-.--+
T Consensus 25 ~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~vG~~~~l~vDan~~ 104 (278)
T d2gl5a1 25 VTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSL 104 (278)
T ss_dssp CSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHHHHHHHHHHhccccceeeccccc
Confidence 47899988877554 459999998765321110 000111 112345556677888888874 4555543335
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++..+..++++.+++.++.++-= + . ...+++..+++++.+++||.+.-.+.+..++.++++...+|.+++
T Consensus 105 ~~~~~Ai~~~~~L~~~~l~wiEe--------P-i-~~~d~~~~~~L~~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~ 174 (278)
T d2gl5a1 105 LGTNSAIQFAKAIEKYRIFLYEE--------P-I-HPLNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQP 174 (278)
T ss_dssp SCHHHHHHHHHHHGGGCEEEEEC--------S-S-CSSCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECC
T ss_pred ccchhhHHHHHHhcccccceecc--------c-c-cccchhhhhhhccccccceecccccCChHHHhhhhccccceeEee
Confidence 67778899999999988776632 1 1 224688899999999999999999999999999997777787764
Q ss_pred c
Q psy7343 362 A 362 (487)
Q Consensus 362 G 362 (487)
-
T Consensus 175 d 175 (278)
T d2gl5a1 175 D 175 (278)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.91 E-value=0.0061 Score=56.18 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHhhC-CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHH
Q psy7343 213 NDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 213 ~d~~~~~~aa~~~~-~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e 289 (487)
.+++++.+.|+.+. +.|..+-+..|.|.. .. ..+++.-.+.++++|+.++ +.+.+-.--+++..+..+
T Consensus 22 ~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~-----~~----~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~ 92 (255)
T d1rvka1 22 ATPEDYGRFAETLVKRGYKGIKLHTWMPPV-----SW----APDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALA 92 (255)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTS-----TT----CCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCcc-----cc----ccCHHHHHHHHHHHHHHcCCccceecccccccccchhhh
Confidence 46888988777654 458888888776431 01 1356666777788888773 445444333567778899
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHH-HHHHHHHhcCCcEEEeccc
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLA-DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~-da~~~l~~~Gad~VmiGRa 364 (487)
+++.+++.++.++-= -....+++..+++++.+++||.+...+.+.. +..++++...+|.+++--+
T Consensus 93 ~~~~l~~~~l~~iEe----------P~~~~d~~~~~~l~~~~~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~d~~ 158 (255)
T d1rvka1 93 LGRGLEKLGFDWIEE----------PMDEQSLSSYKWLSDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVN 158 (255)
T ss_dssp HHHHHHTTTCSEEEC----------CSCTTCHHHHHHHHHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHH
T ss_pred hhhhcccchhhhhcC----------CcccccHHHHHHHHHhcccceeehhhcccchhhhhhhhhhchhhhcccccc
Confidence 999999999887742 1122468889999999999999988988865 6778887777898876543
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.82 E-value=0.0019 Score=59.05 Aligned_cols=95 Identities=18% Similarity=0.326 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCcEEEEEccccC-C-CCCCCCCCCHHHHHHHHh-hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 288 VEYARMLERAGCQLLAVHGRTVD-Q-RGMNTGLASWEHITAVRK-ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 288 ~e~a~~le~~G~d~I~VhgRt~~-~-~g~~~g~~~~~~i~~i~~-~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+.++...+.|+|+|.+ |-... . ++.......++.++.+++ .+++||++-||| |.+++.+++ .+|+++|.+.++
T Consensus 125 ~~e~~~a~~~g~DYi~~-gpvf~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~-~~Ga~giAvis~ 201 (226)
T d2tpsa_ 125 MSEVKQAEEDGADYVGL-GPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVI-QAGADGVSMISA 201 (226)
T ss_dssp HHHHHHHHHHTCSEEEE-CCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHH-HTTCSEEEESHH
T ss_pred hHHHHHHHhCcCCeEEE-ecccccccccccccccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHH-HhCCCEEEEhHH
Confidence 34445566789999999 53211 1 111222234577777764 579999999999 778999998 799999999999
Q ss_pred cccCcccccCCCCCcHHHHHHHHHHHHHc
Q psy7343 365 NLYNPALFTGQTRPAWELASEYLDLVAQY 393 (487)
Q Consensus 365 ~l~~P~lf~~~~~~~~~~~~~~l~~~~~~ 393 (487)
++..++. .+.++++.+.++.|
T Consensus 202 I~~a~dp--------~~~~~~~~~~~~~~ 222 (226)
T d2tpsa_ 202 ISQAEDP--------ESAARKFREEIQTY 222 (226)
T ss_dssp HHTSSCH--------HHHHHHHHHHHHHH
T ss_pred hhcCCCH--------HHHHHHHHHHHHHH
Confidence 9875543 34455555555544
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=96.82 E-value=0.011 Score=53.65 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=90.9
Q ss_pred CeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY 281 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~ 281 (487)
|+..-+..++++++.+.++.+ ++.++.+-+.+|. .+.+.-.+.++++++++ ++.+.+-.--+
T Consensus 6 ~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~---------------~~~~~d~~~i~~ir~~~g~~~~i~vD~N~~ 70 (234)
T d1jpma1 6 ETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGK---------------DDIATDIARIQEIRKRVGSAVKLRLDANQG 70 (234)
T ss_dssp EBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHGGGSEEEEECTTC
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCC---------------CCHHHHHHHHHHHHHHcCchhhhhhhcccc
Confidence 444445556889888776654 4457777666553 13333344555566555 23344333224
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++..+..++++.+++.+.+..-+ ++ + . ...+++..+++++..++||.....+.+..+..++++...+|.+++
T Consensus 71 ~~~~~a~~~~~~le~~~~~i~~~-----Ee-P-~-~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~i~~~~~d~v~~ 142 (234)
T d1jpma1 71 WRPKEAVTAIRKMEDAGLGIELV-----EQ-P-V-HKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINI 142 (234)
T ss_dssp SCHHHHHHHHHHHHHTTCCEEEE-----EC-C-S-CTTCHHHHHHHHHHCSSCEEESTTCSSHHHHHHHHHTTCCSEEEE
T ss_pred cchHHHHHHHHHHHhccCceeee-----cC-C-c-cccCHHHHHHhhccccceeecccccccchhhhhhhccCCcCeEEE
Confidence 56677888999999876664333 11 1 1 234789999999999999999999999999999997667899987
Q ss_pred c
Q psy7343 362 A 362 (487)
Q Consensus 362 G 362 (487)
-
T Consensus 143 d 143 (234)
T d1jpma1 143 K 143 (234)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=96.78 E-value=0.005 Score=55.91 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHH----HHHHHHhh-CC
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE----HITAVRKA-LT 332 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~----~i~~i~~~-~~ 332 (487)
...+.++...+. ++.+++-+ + .....+.+.+.+.+.|.+-+...-+.|.-....+.+ .++.+++. -+
T Consensus 104 e~~~~i~~~~~~-gl~~i~cv----~---~~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~~~~~~i~~~i~~i~~~~~~ 175 (224)
T d1hg3a_ 104 DLEAAIRRAEEV-GLMTMVCS----N---NPAVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPE 175 (224)
T ss_dssp HHHHHHHHHHHH-TCEEEEEE----S---SHHHHHHHHTTCCSEEEECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCTT
T ss_pred chhHHHHHHHHc-CCceeech----h---hHHHHHhhhhcccceEEecchHhhccccCCCchhhhhhhhhhhhhhhhccc
Confidence 344444444433 55555544 1 223455677788888877443222222111122233 33344433 27
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+||++.|+|.+.+|+..++ ..|+|||.||+|.+.-++.
T Consensus 176 v~vlygGsV~~~n~~~~~~-~~g~dGvLVGsAsl~a~d~ 213 (224)
T d1hg3a_ 176 VKVLCGAGISTGEDVKKAI-ELGTVGVLLASGVTKAKDP 213 (224)
T ss_dssp SEEEEESSCCSHHHHHHHH-HTTCSEEEESHHHHTCSSH
T ss_pred cceEEeCCcCCHHHHHHHH-hCCCCEEEEcceeecCcCH
Confidence 9999999999999999998 6899999999999875554
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=96.77 E-value=0.0027 Score=57.92 Aligned_cols=109 Identities=19% Similarity=0.198 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHH----HHHHHHhhC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE----HITAVRKAL 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~----~i~~i~~~~ 331 (487)
.+.+.+.++..++. ++.+++-+ + +..+ ++...+.+.+.|.+-+...-..+.-..+.+.+ .++.+++..
T Consensus 100 ~~e~~~~~~~~~~~-gl~~ivcv----g--e~~~-~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~ 171 (226)
T d1w0ma_ 100 LNDLARLVAKAKSL-GLDVVVCA----P--DPRT-SLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHF 171 (226)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEE----S--SHHH-HHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHc-CCEEEEec----C--chHH-hhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccC
Confidence 34455555555443 66566554 1 2333 34556678888877554332221111111222 333444443
Q ss_pred -CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccccc
Q psy7343 332 -TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 332 -~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
++||++.|||.+.+++..++ ..|+|||.||++.+.-++.|.
T Consensus 172 ~~i~vlygGgV~~~n~~~~~~-~~g~dGvLVGsA~l~a~d~~~ 213 (226)
T d1w0ma_ 172 PEVSVITGAGIESGDDVAAAL-RLGTRGVLLASAAVKAKDPYA 213 (226)
T ss_dssp TTSEEEEESSCCSHHHHHHHH-HTTCSEEEECHHHHTCSSHHH
T ss_pred CCceEEEecCcCChHHHHHHh-cCCCCEEEechheecCCCHHH
Confidence 79999999999999999988 689999999999997766554
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.76 E-value=0.0049 Score=55.86 Aligned_cols=147 Identities=17% Similarity=0.273 Sum_probs=91.9
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEEEe--ecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDI--NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~Idi--N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+++.|...|..++.+..+.+++. .|.|.+ .=|. +--.+.-.++ .++.+++..++|+-+-+
T Consensus 4 IspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~---------Fvpn~s~g~~----~i~~i~~~t~~~~dvHL---- 66 (217)
T d2flia1 4 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQ---------FVPNISFGAD----VVASMRKHSKLVFDCHL---- 66 (217)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSS---------SSSCBCBCHH----HHHHHHTTCCSEEEEEE----
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCc---------CCCccccCHH----HHHHHHhcCCCceEeEE----
Confidence 45556666777777777766554 555433 2232 1110111233 34456666778877765
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccC-------------------------------------------CCCCCCCCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVD-------------------------------------------QRGMNTGLA 319 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~-------------------------------------------~~g~~~g~~ 319 (487)
-..+...+.+.+.++|+|.|++|..+.. -.+++.|..
T Consensus 67 Mv~~P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~~Gq~ 146 (217)
T d2flia1 67 MVVDPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQA 146 (217)
T ss_dssp ESSSGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCC
T ss_pred EecCHHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCcccccc
Confidence 3445666777788888888888863310 012333432
Q ss_pred ----CHHHHHHHHhh-----CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 320 ----SWEHITAVRKA-----LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 320 ----~~~~i~~i~~~-----~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.++.++++++. .+++|..-|||+ .+.+..+. +.|||.+.+|++++.++++
T Consensus 147 f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~-~aGad~~V~Gsaif~~~d~ 205 (217)
T d2flia1 147 FIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACY-EAGANVFVAGSYLFKASDL 205 (217)
T ss_dssp CCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHH-HHTCCEEEESHHHHTSSCH
T ss_pred cchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHH-HCCCCEEEEchHHhCCCCH
Confidence 34666666543 368899999996 56788888 7999999999998876654
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=96.73 E-value=0.0011 Score=59.62 Aligned_cols=147 Identities=15% Similarity=0.186 Sum_probs=94.8
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcc------ee-eccC---ccccccCChHHHHHHHHHHhhhccC
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM------VA-KRGH---YGAYLQDDWPLLTNLVSSLRQAVQV 272 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~------i~-~~gr---~G~~l~~d~~~i~eiv~~v~~~~~i 272 (487)
.|++.-+++.+.++....++.+.+. ...+||.+-.|.. +. .++. .|..-..+.+.+.+.+++ +.
T Consensus 9 ~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~a-----Ga 83 (202)
T d1wa3a1 9 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVES-----GA 83 (202)
T ss_dssp HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHH-----TC
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhh-----cc
Confidence 4677778898999999999877666 8999999998763 11 1111 122123456666655443 23
Q ss_pred cEEEE---------------eecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEE
Q psy7343 273 PVSCK---------------IRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVI 336 (487)
Q Consensus 273 PV~vK---------------iR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi 336 (487)
.+++. +-..+...+..|+.+. .++|++.+-+..-. ..| -.+++.++.-+ ++|++
T Consensus 84 ~fivsP~~~~~v~~~~~~~~i~~iPGv~TpsEi~~A-~~~G~~~lK~fPa~------~~G---~~~lk~l~~p~p~i~~i 153 (202)
T d1wa3a1 84 EFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKA-MKLGHTILKLFPGE------VVG---PQFVKAMKGPFPNVKFV 153 (202)
T ss_dssp SEEECSSCCHHHHHHHHHHTCEEECEECSHHHHHHH-HHTTCCEEEETTHH------HHH---HHHHHHHHTTCTTCEEE
T ss_pred cEEeCCCCcHHHHHHHHhcCCceeCCcCcHHHHHHH-HHCCCCEEEecchh------hcC---HHHHHHHhCcccCCcEE
Confidence 33331 0001123455555554 46888988883311 111 15677777766 79999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
..||| |.+++.+.+ +.|+.+|.+|+.+..
T Consensus 154 ptGGI-~~~n~~~~l-~aga~avg~Gs~l~~ 182 (202)
T d1wa3a1 154 PTGGV-NLDNVCEWF-KAGVLAVGVGSALVK 182 (202)
T ss_dssp EBSSC-CTTTHHHHH-HHTCSCEEECHHHHC
T ss_pred eeCCC-CHHHHHHHH-HCCCeEEEEchhhcC
Confidence 99999 689999999 579999999987663
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=96.32 E-value=0.018 Score=52.67 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=81.1
Q ss_pred cCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeecccccccHH
Q psy7343 212 GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 212 g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~ 288 (487)
+.+++.+.+.++.+ ++.|..+-+..|. .+.+.-.+.++++++.++ +.+.+-.--+++..+..
T Consensus 18 ~~~~~~~~~~~~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai 82 (247)
T d1tzza1 18 GKGLSMLRGEMRGYLDRGYNVVKMKIGG---------------APIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGI 82 (247)
T ss_dssp --CHHHHHHHHHHHHTTTCSEEEEECSS---------------SCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCC---------------CCHHHHHHHHHHHHHhccCCceEEecccccccchhHH
Confidence 45788887766654 4456666655442 245555566677777663 34444333356777889
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
++++.+++.++.++-= + . ...+++.++++++.+++||.+.-.+.+..++.++++.
T Consensus 83 ~~~~~l~~~~i~wiEe--------P-~-~~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~ 137 (247)
T d1tzza1 83 AYAKMLRDYPLFWYEE--------V-G-DPLDYALQAALAEFYPGPMATGENLFSHQDARNLLRY 137 (247)
T ss_dssp HHHHHHTTSCCSEEEC--------C-S-CTTCHHHHHHHTTTCCSCEEECTTCCSHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhcc--------c-c-ccccchhhhhhhhccccccccchhhhhhHHHHHHHHc
Confidence 9999999998887642 1 1 2247889999999999999999999999999999953
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.31 E-value=0.029 Score=50.77 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=77.2
Q ss_pred HhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---cccccHHHHHHHHHHcCC
Q psy7343 223 KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDVNKTVEYARMLERAGC 299 (487)
Q Consensus 223 ~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~d~~~~~e~a~~le~~G~ 299 (487)
+.+.+.+|.||+=+.. +.....+|+.+.+-+..+++..+ +..+|+-+. .+.++....++.+.++|+
T Consensus 74 ~a~~~GAdEID~Vin~----------~~~~~g~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGa 142 (226)
T d1vcva1 74 SRLAEVADEIDVVAPI----------GLVKSRRWAEVRRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGA 142 (226)
T ss_dssp HHHTTTCSEEEEECCH----------HHHHTTCHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCeeEEEecH----------HHHhCCCHHHHHHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCc
Confidence 4556668888863211 22223478888887777877763 345666542 133456777888889999
Q ss_pred cEEEEEccccCCC-----CCCCCCCCHHH---HHHHHhhC--CCcEEEcCCCCCHHHHHHHHHh------cCCcEEEecc
Q psy7343 300 QLLAVHGRTVDQR-----GMNTGLASWEH---ITAVRKAL--TIPVIANGNIQCLADVEACLAQ------TGVAGVMTAE 363 (487)
Q Consensus 300 d~I~VhgRt~~~~-----g~~~g~~~~~~---i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~------~Gad~VmiGR 363 (487)
|+|--+-. .... ....-.+..+. ++++.+.. ++-|=++|||+|.+++.++++. .|+..+...+
T Consensus 143 dFIKTSTG-f~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs 221 (226)
T d1vcva1 143 HFIKSSTG-FAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp SEEECCCS-CCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred ceeeeccc-ccCCcccccccCcccCcHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHhhhcCCCCCCEEEecCC
Confidence 99965211 1000 00011233444 44433332 6778899999999999999953 2665555444
Q ss_pred c
Q psy7343 364 G 364 (487)
Q Consensus 364 a 364 (487)
+
T Consensus 222 ~ 222 (226)
T d1vcva1 222 P 222 (226)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.14 E-value=0.021 Score=50.79 Aligned_cols=141 Identities=17% Similarity=0.203 Sum_probs=83.7
Q ss_pred eccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccccc-HH
Q psy7343 210 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK-TV 288 (487)
Q Consensus 210 i~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~-~~ 288 (487)
+...+.++..+.++.+.+..++|+++..- +.. +| ++. ++.+++..+.+|++-..+. |+.+ ..
T Consensus 6 LD~~~~~~a~~~~~~l~~~v~~iKvG~~l---~~~---~G------~~~----i~~l~~~~~~~if~DlK~~-Di~~t~~ 68 (206)
T d2czda1 6 LDVYEGERAIKIAKSVKDYISMIKVNWPL---ILG---SG------VDI----IRRLKEETGVEIIADLKLA-DIPNTNR 68 (206)
T ss_dssp CCCCSHHHHHHHHHHHGGGCSEEEEEHHH---HHH---HC------TTH----HHHHHHHHCCEEEEEEEEC-SCHHHHH
T ss_pred eCCCCHHHHHHHHHHhCCcccEEEECHHH---Hhh---cC------HHH----HHHHHHhcCCeEEEEeeee-eecccch
Confidence 33457778888888887778888886321 111 12 233 3445555678888865555 5543 45
Q ss_pred HHHHHHHHcCCcEEEEEccccC-------CCC------CCC----------------------------C-CCCHHHHHH
Q psy7343 289 EYARMLERAGCQLLAVHGRTVD-------QRG------MNT----------------------------G-LASWEHITA 326 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~-------~~g------~~~----------------------------g-~~~~~~i~~ 326 (487)
..++.+.+.|+|.++||+.... +.+ ..+ + ....+.+..
T Consensus 69 ~~~~~~~~~gad~~Tvh~~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~ 148 (206)
T d2czda1 69 LIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRPERIGY 148 (206)
T ss_dssp HHHHHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSSTHHHHH
T ss_pred heehhhccccccEEEeeecccHHHHHHhhhcccceEEEeccCCcccccccHHHHHHHHHHHhcccccccccccCchhhhh
Confidence 6778888899999999984311 000 000 0 012234445
Q ss_pred HHhhC--CCcEEEcCCCCC-HHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 327 VRKAL--TIPVIANGNIQC-LADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 327 i~~~~--~iPVi~nGgI~s-~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
+++.. ++.++. +||.. ..+..+.+ +.|+|.+++||++...+
T Consensus 149 ~r~~~~~~~~i~~-pGI~~~~~~~~~ai-~~Gad~iVvGR~I~~a~ 192 (206)
T d2czda1 149 IRDRLKEGIKILA-PGIGAQGGKAKDAV-KAGADYIIVGRAIYNAP 192 (206)
T ss_dssp HHHHSCTTCEEEE-CCCCSSTTHHHHHH-HHTCSEEEECHHHHTSS
T ss_pred hhhhhcccceEEC-CCccccCCCHHHHH-HhCCCEEEEChhhccCC
Confidence 55554 234444 55542 33566667 57999999999987654
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=96.10 E-value=0.021 Score=53.44 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=81.2
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++.+-- .+..+..+.+
T Consensus 22 D~~~~~~~i~~l~~~--------Gv-~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~s~~~~i~~a 91 (292)
T d1xkya1 22 DFAKTTKLVNYLIDN--------GT-TAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGS-NNTHASIDLT 91 (292)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--------CC-CEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCc-ccHHHHHHHH
Confidence 667777777766555 44 3455555566654334555566666666554 5788887611 2345678889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..-... . .+....+++++++.+++++|++. .|.-.+.+.+.++.+
T Consensus 92 ~~a~~~Gad~ilv~pP~~~-~--~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~ 155 (292)
T d1xkya1 92 KKATEVGVDAVMLVAPYYN-K--PSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE 155 (292)
T ss_dssp HHHHHTTCSEEEEECCCSS-C--CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHcCCCEEEECCCCCC-C--CCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhcc
Confidence 9999999999999533110 0 11112357788888899999875 355677888777664
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.04 E-value=0.022 Score=53.25 Aligned_cols=127 Identities=15% Similarity=0.158 Sum_probs=82.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. || ..+..-|.+|....-..+.-.++++.+.+.. ++||++-+-- .+..+..+.+
T Consensus 20 D~~~~~~~i~~l~~~--------Gv-~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~st~~ai~~a 89 (295)
T d1o5ka_ 20 DLESYERLVRYQLEN--------GV-NALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGT-NSTEKTLKLV 89 (295)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeeccc-ccHHHHHHHH
Confidence 667777777755444 55 4455556666654333444455666665554 5889887611 2445778999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHHHh
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA------NGNIQCLADVEACLAQ 353 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l~~ 353 (487)
+.+++.|+|++++...... . .+...-+++++++.+++++|++. .|.-.+.+.+.++.++
T Consensus 90 ~~A~~~Gad~v~v~pP~y~-~--~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~ 154 (295)
T d1o5ka_ 90 KQAEKLGANGVLVVTPYYN-K--PTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAAD 154 (295)
T ss_dssp HHHHHHTCSEEEEECCCSS-C--CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCCCC-C--CCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHHHHHhh
Confidence 9999999999999654211 0 11112347788888899999874 3777789999888753
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=96.03 E-value=0.035 Score=49.98 Aligned_cols=124 Identities=21% Similarity=0.214 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHH
Q psy7343 213 NDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 213 ~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e 289 (487)
.+++...+-++.+ +..+..+-|..|.+ +.+.-.+.++++++.+ ++.+.+-.--+++..+..+
T Consensus 11 d~~~~~~e~~~~~~~~G~~~~KikvG~~---------------~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~ 75 (227)
T d2mnra1 11 DGVKLATERAVTAAELGFRAVKTKIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIK 75 (227)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCCEEEEccCCC---------------CHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHHHH
Confidence 3455555555444 34466665554431 2333344556666665 3445443333567778899
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+++.+++.|+.++-= + . .+.+++..+++++.+++||.+.-.+.+.+++.++++...+|.+++
T Consensus 76 ~~~~l~~~~~~~iEe--------P-~-~~~~~~~~~~l~~~~~ipia~gE~~~~~~~~~~~~~~~~~d~~~~ 137 (227)
T d2mnra1 76 RSQALQQEGVTWIEE--------P-T-LQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMP 137 (227)
T ss_dssp HHHHHHHHTCSEEEC--------C-S-CTTCHHHHHHHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred HHHHhhhchhhhhcC--------c-c-cccchhhhHHHHHHcCCccccCceeEeechhhhhHhcCceeeeec
Confidence 999999999887742 1 1 234688999999999999999999999999999997777787765
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=96.02 E-value=0.017 Score=53.11 Aligned_cols=139 Identities=10% Similarity=0.092 Sum_probs=93.7
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
..+.|+--|=|--|+-+..++... .+|+|=|-.++ -+.+.+.++++..+ ..++-+.+-+
T Consensus 99 ~~~~PiLrKDFIid~~QI~ea~~~---GADaiLLI~~~---------------L~~~~l~~l~~~a~-~lgle~LvEv-- 157 (251)
T d1i4na_ 99 LTCRPILAKDFYIDTVQVKLASSV---GADAILIIARI---------------LTAEQIKEIYEAAE-ELGMDSLVEV-- 157 (251)
T ss_dssp TCCSCEEEECCCCSTHHHHHHHHT---TCSEEEEEGGG---------------SCHHHHHHHHHHHH-TTTCEEEEEE--
T ss_pred cccCchhhhhhhhCHHHHHHHHhh---ccceEEeeccc---------------ccHHHHHHHHHHHH-HhCCeeeccc--
Confidence 346898888665577666655432 13333333222 13566777777544 4577777765
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
.+..|+.+.+...|++.|-|-.|.-.. -..+.+...++...+ +..+|+-+||.+.+|+..+ ..|+|+
T Consensus 158 ----h~~~El~~al~~~~a~iiGINnRdL~t-----~~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~~l--~~G~da 226 (251)
T d1i4na_ 158 ----HSREDLEKVFSVIRPKIIGINTRDLDT-----FEIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDL--RGKVNA 226 (251)
T ss_dssp ----CSHHHHHHHHTTCCCSEEEEECBCTTT-----CCBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHH--TTTCSE
T ss_pred ----CCHHHHHHHhcccccceeeeeecchhc-----cchhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHHHH--HhCCCE
Confidence 355666667777789999997774322 234556667777766 6789999999999999764 469999
Q ss_pred EEeccccccCccc
Q psy7343 359 VMTAEGNLYNPAL 371 (487)
Q Consensus 359 VmiGRa~l~~P~l 371 (487)
|.||.++|..++.
T Consensus 227 vLIG~sLm~~~~p 239 (251)
T d1i4na_ 227 VLVGTSIMKAENP 239 (251)
T ss_dssp EEECHHHHHCSSH
T ss_pred EEEChHHhCCCCH
Confidence 9999999987653
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.028 Score=51.74 Aligned_cols=136 Identities=13% Similarity=0.159 Sum_probs=90.1
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.|+--|=|--|+.+..++... .+|+|=|-.++ -+.+.+.++++..+ ..+.-+.+-+
T Consensus 108 ~~PiLrKDFIid~~QI~ear~~---GADavLLI~~~---------------L~~~~l~~l~~~a~-~lgl~~LVEv---- 164 (254)
T d1piia2 108 PQPILCKDFIIDPYQIYLARYY---QADACLLMLSV---------------LDDDQYRQLAAVAH-SLEMGVLTEV---- 164 (254)
T ss_dssp CSCEEEESCCCSHHHHHHHHHT---TCSEEEEETTT---------------CCHHHHHHHHHHHH-HTTCEEEEEE----
T ss_pred ccccchhcccCcHHHHHHHHhh---ccchhhhhHhh---------------hcccHHHHHHHHHH-HHhhhHHHhh----
Confidence 5788777555577666554432 13444333332 14566777776543 4577777765
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
.+..| .+...+.|++.|-|-.|.-.. -..|.+...++...+ +..+++-+||.|.+|+..+ ..|+|+|.
T Consensus 165 --h~~~E-l~~a~~~~a~iIGINnRnL~t-----f~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l--~~g~davL 234 (254)
T d1piia2 165 --SNEEE-QERAIALGAKVVGINNRDLRD-----LSIDLNRTRELAPKLGHNVTVISESGINTYAQVREL--SHFANGFL 234 (254)
T ss_dssp --CSHHH-HHHHHHTTCSEEEEESEETTT-----TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHH--TTTCSEEE
T ss_pred --ccHHH-HHHHHhhcccccCccccchhh-----hhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHH--HcCCCEEE
Confidence 23334 455557899999997774322 234566666666665 6778999999999999764 45899999
Q ss_pred eccccccCccc
Q psy7343 361 TAEGNLYNPAL 371 (487)
Q Consensus 361 iGRa~l~~P~l 371 (487)
||.++|..|+.
T Consensus 235 iGeslm~~~dp 245 (254)
T d1piia2 235 IGSALMAHDDL 245 (254)
T ss_dssp ECHHHHTCSCH
T ss_pred EChHHhCCCCH
Confidence 99999988764
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=95.80 E-value=0.027 Score=51.19 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=88.8
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEe
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKi 278 (487)
.+|+-+.+. +.+++++.+.++.. ++.|..+-|..|- ..|.+.+.. +++.+ ++.+.+-.
T Consensus 4 ~ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~--------------~~Di~~i~~----ir~~~g~~~~l~vDa 65 (242)
T d1sjda1 4 SVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEP--------------GWDVEPVRA----VRERFGDDVLLQVDA 65 (242)
T ss_dssp EEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECBT--------------TBSHHHHHH----HHHHHCTTSEEEEEC
T ss_pred eeEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCc--------------hhHHHHHHH----HHHHhCCCeeEeecc
Confidence 467777766 45788887766654 4446666554331 135555444 44444 33444433
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
--+++..+..++++ +++.++.+|-= + . ...+++..+++++..++||.+.-.+.+..++.++++...+|.
T Consensus 66 N~~~~~~~a~~~~~-l~~~~~~~iEe--------P-~-~~~d~~~~~~l~~~~~~pia~gE~~~~~~~~~~~~~~~~~d~ 134 (242)
T d1sjda1 66 NTAYTLGDAPQLAR-LDPFGLLLIEQ--------P-L-EEEDVLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQI 134 (242)
T ss_dssp TTCCCGGGHHHHHT-TGGGCCSEEEC--------C-S-CTTCHHHHHHHHTTCSSCEEESTTCCSHHHHHHHHHTTCCSE
T ss_pred ccccchhhhhHHhh-hhhhhhHHHHh--------h-h-hhhhHHHHHHHHhccCcccccccccccchhhhhhhhcCccCE
Confidence 23567777888876 78888887642 1 1 235788899999999999999999999999999997666898
Q ss_pred EEe
Q psy7343 359 VMT 361 (487)
Q Consensus 359 Vmi 361 (487)
+++
T Consensus 135 ~~~ 137 (242)
T d1sjda1 135 VNI 137 (242)
T ss_dssp EEE
T ss_pred EEe
Confidence 886
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.024 Score=49.80 Aligned_cols=104 Identities=14% Similarity=0.074 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh--CCC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--LTI 333 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--~~i 333 (487)
.+.+.++++..++. +..+.+-. ...+..+....+.+.|++.+.+|-....+.. ........+.++++. .++
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~l~~i~~~~~~~~ 162 (213)
T d1q6oa_ 90 INTAKGALDVAKEF-NGDVQIEL----TGYWTWEQAQQWRDAGIGQVVYHRSRDAQAA--GVAWGEADITAIKRLSDMGF 162 (213)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEE----CSCCCHHHHHHHHHTTCCEEEEECCHHHHHT--TCCCCHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHc-CCceeccc----CCCCCHHHHHHHHHhHHHHHHHHHhcccCcC--CeeCCHHHHHHHHHhhccCc
Confidence 55566666665543 43333322 1223344566677789998887432211111 111122333444333 478
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++...||++ .+++.+++ +.|+|.+++||+++..
T Consensus 163 ~i~~~gGi~-~~~~~~~~-~~Gad~iVVGr~I~~a 195 (213)
T d1q6oa_ 163 KVTVTGGLA-LEDLPLFK-GIPIHVFIAGRSIRDA 195 (213)
T ss_dssp EEEEESSCC-GGGGGGGT-TSCCSEEEESHHHHTS
T ss_pred eEecCCCcC-cCCHHHHH-HcCCCEEEEChhhcCC
Confidence 888888875 78888888 7899999999997664
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=95.62 E-value=0.049 Score=49.40 Aligned_cols=131 Identities=11% Similarity=0.173 Sum_probs=85.7
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEee
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR 279 (487)
.+|+.+.+. ..+++++.+.++.+.+ .|+.+-+..|. ..|- +.++++++.++ +.+.+-.-
T Consensus 4 ~i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~--------------~~D~----~~v~~ir~~~~~~~l~vDaN 65 (244)
T d1wufa1 4 SIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP--------------NKDI----QFVEAVRKSFPKLSLMADAN 65 (244)
T ss_dssp EEEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT--------------TBSH----HHHHHHHTTCTTSEEEEECT
T ss_pred eEEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC--------------cHHH----HHHHHHHHhccchhhhhhhh
Confidence 356666665 3578888876665544 46655554331 1233 34556776653 22333222
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+++..+.. ..+.+++.++.++- + + -...+++..+++++.+++||.+...+.+..++.++++...+|.+
T Consensus 66 ~~~~~~~a~-~~~~l~~~~~~wiE-------e-P--~~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~v 134 (244)
T d1wufa1 66 SAYNREDFL-LLKELDQYDLEMIE-------Q-P--FGTKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAI 134 (244)
T ss_dssp TCCCGGGHH-HHHTTGGGTCSEEE-------C-C--SCSSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEE
T ss_pred ccccchhhh-hhhcccccchhhhc-------C-c--ccccchhhhhccccccccccccCccccchhhhhhhcccccccee
Confidence 245666665 45678888877662 1 1 12346888999999999999999999999999999976678988
Q ss_pred Eec
Q psy7343 360 MTA 362 (487)
Q Consensus 360 miG 362 (487)
++-
T Consensus 135 ~~d 137 (244)
T d1wufa1 135 NLK 137 (244)
T ss_dssp EEC
T ss_pred ecc
Confidence 764
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.042 Score=51.65 Aligned_cols=148 Identities=15% Similarity=0.184 Sum_probs=89.5
Q ss_pred CCCCeeeeec---cCCHHHHHHHHHhhCCc-CcEEEeecCC-CcceeeccCccc-cccCChHHHHHHHHHHhhhccCcEE
Q psy7343 202 EDRPLIIQFC---GNDSKNLTEAAKLAEPH-CDGIDINIGC-PQMVAKRGHYGA-YLQDDWPLLTNLVSSLRQAVQVPVS 275 (487)
Q Consensus 202 ~~~Pv~Vqi~---g~d~~~~~~aa~~~~~~-~d~IdiN~Gc-P~~i~~~gr~G~-~l~~d~~~i~eiv~~v~~~~~iPV~ 275 (487)
.+.||++-.- |+++.+..+.++.++++ +.+|.|-=.. |. +.+..+. .+...-+.+.++..++....+..+.
T Consensus 76 ~~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk---~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~ 152 (289)
T d1muma_ 76 CSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAK---RCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFV 152 (289)
T ss_dssp CCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCS---STTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSE
T ss_pred cCCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCccccc---ccccccccceecHHHHHHHHHHHHHhcCCcchh
Confidence 4689999975 45688888988888776 6666664221 11 1122222 2333233444433333222233455
Q ss_pred EEeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc---CCCCCHHHHH
Q psy7343 276 CKIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN---GNIQCLADVE 348 (487)
Q Consensus 276 vKiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n---GgI~s~~da~ 348 (487)
+..|.. .+.++..+=++...++|+|.|.+++. .+.+.++++.+.++.|+.+| |+-...-++.
T Consensus 153 IiARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~~~-----------~~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~ 221 (289)
T d1muma_ 153 IMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI-----------TELAMYRQFADAVQVPILANITEFGATPLFTTD 221 (289)
T ss_dssp EEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC-----------CCHHHHHHHHHHHCSCBEEECCSSSSSCCCCHH
T ss_pred heeccccccccCHHHHHHHHHHhhhcCCcEEEecCC-----------CCHHHHHHHHHhcCCCEEEeecCcCCCccchHH
Confidence 666652 23456677778888999999998433 35678899999888887653 3333222344
Q ss_pred HHHHhcCCcEEEeccc
Q psy7343 349 ACLAQTGVAGVMTAEG 364 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa 364 (487)
++. +.|+..+..+-.
T Consensus 222 eL~-~~Gv~~v~~~~~ 236 (289)
T d1muma_ 222 ELR-SAHVAMALYPLS 236 (289)
T ss_dssp HHH-HTTCSEEEESSH
T ss_pred HHH-HhccceEEechH
Confidence 555 789999888743
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.61 E-value=0.039 Score=51.73 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=80.3
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+|+++-+- +.+..+..+.+
T Consensus 26 D~~~l~~~i~~li~~--------Gv-~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~-~~s~~~~i~~a 95 (296)
T d1xxxa1 26 DTATAARLANHLVDQ--------GC-DGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAG-TYDTAHSIRLA 95 (296)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccc-cchhHHHHHHH
Confidence 677777777766555 44 3445555556554334555556666665554 478877641 12456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l~ 352 (487)
+..++.|+|++++..-... . .+...-.++++++.+.+++||+. .|-..+.+.+.++.+
T Consensus 96 ~~a~~~Gad~v~i~~P~~~-~--~~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~~~~~~~~~~L~~ 159 (296)
T d1xxxa1 96 KACAAEGAHGLLVVTPYYS-K--PPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALAS 159 (296)
T ss_dssp HHHHHHTCSEEEEECCCSS-C--CCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred HHHHHhcCCeEEEEeccCC-C--CCHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCHHHHHHhcC
Confidence 9999999999999543211 0 11111347888899999999875 255568888877764
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=95.61 E-value=0.035 Score=51.08 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=83.8
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.||-.|=+--|+.+..++... .+|+|=|..+. .. +.+.++++. ...++.-+.+.+
T Consensus 105 ~~iPvLrKDFIid~~QI~ea~~~---GADaVLLIaal--------------l~--~~l~~l~~~-A~~lgl~~LVEv--- 161 (254)
T d1vc4a_ 105 VDLPLLRKDFVVDPFMLEEARAF---GASAALLIVAL--------------LG--ELTGAYLEE-ARRLGLEALVEV--- 161 (254)
T ss_dssp CCSCEEEESCCCSHHHHHHHHHT---TCSEEEEEHHH--------------HG--GGHHHHHHH-HHHHTCEEEEEE---
T ss_pred cCCCcccCCccccHHHHHHHHhc---cchHHHHHHHH--------------HH--HHHHHHHHH-HHHhCCceEEEe---
Confidence 36799888665577666654321 23444333211 11 123344443 334578888876
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHH-HHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA-VRKA-LTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~-i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
.+ .+.++...+.|++.|.|-.|.-... -........+.+ +.+. .++.+|+.+||.|.+|+.. + ..|+|+|
T Consensus 162 ---h~-~~El~~a~~~~a~iIGINnRdL~t~--~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv~~-l-~~g~dav 233 (254)
T d1vc4a_ 162 ---HT-ERELEIALEAGAEVLGINNRDLATL--HINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKA-L-EGLFDAV 233 (254)
T ss_dssp ---CS-HHHHHHHHHHTCSEEEEESBCTTTC--CBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHT-T-TTTCSEE
T ss_pred ---cc-HHHHhhhhcCCCCEEEEeccchhhh--hcchHHHHHhhhcccccCCCCEEEEccCCCCHHHHHH-H-HcCCCEE
Confidence 23 3334556678999999977743332 111112222333 3332 2678899999999999865 4 4699999
Q ss_pred EeccccccCccc
Q psy7343 360 MTAEGNLYNPAL 371 (487)
Q Consensus 360 miGRa~l~~P~l 371 (487)
.||.++|.+|+.
T Consensus 234 LIGesLm~~~d~ 245 (254)
T d1vc4a_ 234 LIGTSLMRAPDL 245 (254)
T ss_dssp EECHHHHTSSCH
T ss_pred EEChhhcCCCCH
Confidence 999999988764
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=95.53 E-value=0.18 Score=44.51 Aligned_cols=181 Identities=13% Similarity=0.170 Sum_probs=99.1
Q ss_pred ccCCCchHHHHHHHHhCCccceecccc--chhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCcCcEE
Q psy7343 156 MVDASELPWRLLSRRYGSHLCYTPMVS--AHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGI 232 (487)
Q Consensus 156 ma~~td~~fr~i~~~~Ga~l~~t~~v~--~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~I 232 (487)
.+|+++..=...+.++|++.+. ++. .+.=.-+++...++....+. ....|-++ ..+.++..+.++.+. .+.|
T Consensus 6 ICGit~~~da~~~~~~gad~iG--fI~~~~SpR~Vs~~~a~~i~~~~~~-~~~~V~V~v~~~~~~i~~~~~~~~--~~~v 80 (205)
T d1nsja_ 6 ICGITNLEDALFSVESGADAVG--FVFYPKSKRYISPEDARRISVELPP-FVFRVGVFVNEEPEKILDVASYVQ--LNAV 80 (205)
T ss_dssp ECCCCSHHHHHHHHHHTCSEEE--EECCTTCTTBCCHHHHHHHHHHSCS-SSEEEEEESSCCHHHHHHHHHHHT--CSEE
T ss_pred EcCCCcHHHHHHHHhCCCCEEe--EeccCCCCCccCHHHHHHHHhhhcc-cceeeccccccHHHHHHhhhhhcc--ccch
Confidence 3567776656778889987653 232 11111234445555554332 23344444 445666666555442 4445
Q ss_pred EeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC
Q psy7343 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312 (487)
Q Consensus 233 diN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~ 312 (487)
++| |. .+++...+ +++. .+++... ...+..++.+.. +.-.+.+.+..... +.
T Consensus 81 Qlh----------g~------e~~~~~~~----~~~~--~~~~~~~----~~~~~~~~~~~~-~~~~~~~l~d~~~~-~~ 132 (205)
T d1nsja_ 81 QLH----------GE------EPIELCRK----IAER--ILVIKAV----GVSNERDMERAL-NYREFPILLDTKTP-EY 132 (205)
T ss_dssp EEC----------SC------CCHHHHHH----HHTT--SEEEEEE----EESSHHHHHHHG-GGTTSCEEEEESCS-SS
T ss_pred hcc----------ch------hhHHHHhh----cccc--eeeeeec----cccchHHHHHHh-hcccceeeeccccc-cC
Confidence 444 32 23444443 3333 2333322 122333333333 33345566644332 23
Q ss_pred CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 313 GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 313 g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
|+.....+|+.++.+... ..|++.+|||+ ++.+.++++..++.+|=+.+|+=..|-.
T Consensus 133 GGtG~~~dw~~~~~~~~~-~~~~~LAGGl~-~~Nv~~ai~~~~p~gvDvsSgvE~~~G~ 189 (205)
T d1nsja_ 133 GGSGKTFDWSLILPYRDR-FRYLVLSGGLN-PENVRSAIDVVRPFAVDVSSGVEAFPGK 189 (205)
T ss_dssp SSCCSCCCGGGTGGGGGG-SSCEEEESSCC-TTTHHHHHHHHCCSEEEESGGGEEETTE
T ss_pred CCCCcccchhhcccchhc-ccceeeecCCC-HHHHHHHHHHhCCCEEEEcCcccCCCCc
Confidence 333345689887776554 34899999995 6888888877899999999998665643
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=95.42 E-value=0.033 Score=50.98 Aligned_cols=124 Identities=17% Similarity=0.167 Sum_probs=80.7
Q ss_pred cCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeecccccccHH
Q psy7343 212 GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 212 g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~ 288 (487)
+.+++++.+.++.+ ++.+..+-+..|. +++.-.+.++++|+.++ +.+.+-.--+++..+..
T Consensus 13 ~~s~ee~~~~a~~~~~~Gf~~~KikvG~----------------~~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~ 76 (252)
T d1yeya1 13 GYSDEKLVRLAKEAVADGFRTIKLKVGA----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAI 76 (252)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEECCC----------------CHHHHHHHHHHHHHHhCCCceEeeccccCcchHHHH
Confidence 44677777766644 4446666555442 34444455666777653 34444333345667788
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.+++.+++.++..+-= --...+++...++++. .++||.+.-.+.+..++.++++...+|.+++
T Consensus 77 ~~~~~l~~~~~~~iEe----------P~~~~d~~~~~~~~~~~~~ipia~gE~~~~~~~~~~~i~~~a~d~~~~ 140 (252)
T d1yeya1 77 DWMRQLAEFDIAWIEE----------PTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQI 140 (252)
T ss_dssp HHHHTTGGGCCSCEEC----------CSCTTCHHHHHHHHHHSTTSCEECCTTCCSHHHHHHHHHHTCCSEECC
T ss_pred HHHHhhhhcCceeecC----------CcchhhHHHHHHHhhccCCCceeccccccchhhhhhHhhccccceecc
Confidence 8888888888877632 1122466666676665 5899999999999999999997777888864
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=95.40 E-value=0.12 Score=46.72 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=92.8
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEE--eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~Id--iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
+.-++..|...|..++.+..+.+++. .|.|. |-=|. +-..+.-.++ +++.+++..++|+-+-+
T Consensus 10 ~~~IspSIl~~d~~~l~~~i~~l~~~g~d~iHiDImDG~---------Fvpn~t~~~~----~v~~i~~~t~~~~dvHL- 75 (230)
T d1rpxa_ 10 DIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGR---------FVPNITIGPL----VVDSLRPITDLPLDVHL- 75 (230)
T ss_dssp SCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSS---------SSSCBCCCHH----HHHHHGGGCCSCEEEEE-
T ss_pred CeEEEcchhhcCHHHHHHHHHHHHHcCCCEEEEeCccCC---------cCCccccChH----HHhhhhhccCceeeeee-
Confidence 44577778877887787777777554 55443 32232 1111111233 34456666677777755
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccC---------------------------------------------CCCC
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVD---------------------------------------------QRGM 314 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~---------------------------------------------~~g~ 314 (487)
=..+...+.+.+.++|++.|++|-.+.. -.++
T Consensus 76 ---Mv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~VllM~V~PG 152 (230)
T d1rpxa_ 76 ---MIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPG 152 (230)
T ss_dssp ---ESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTT
T ss_pred ---eecchhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCEEEEEEecCC
Confidence 3446677777777778888877753100 0123
Q ss_pred CCCCC----CHHHHHHHHhh-----CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 315 NTGLA----SWEHITAVRKA-----LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 315 ~~g~~----~~~~i~~i~~~-----~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+.|.. .++.++++++. .++.|..-|||+. +.+..+. +.|||.+.+|++++.++++
T Consensus 153 f~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~-~~Gad~~V~GS~if~~~d~ 216 (230)
T d1rpxa_ 153 FGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVI-EAGANALVAGSAVFGAPDY 216 (230)
T ss_dssp CSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHH-HHTCCEEEESHHHHTSSCH
T ss_pred cccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHH-HcCCCEEEEChHHHCCCCH
Confidence 44432 23555555432 4788999999975 5777777 7899999999998877654
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=95.39 E-value=0.022 Score=52.61 Aligned_cols=136 Identities=14% Similarity=0.095 Sum_probs=72.2
Q ss_pred HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHh---hhccCcEEEEeeccc---ccccHHHH
Q psy7343 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR---QAVQVPVSCKIRIYQ---DVNKTVEY 290 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~---~~~~iPV~vKiR~~~---d~~~~~e~ 290 (487)
...++...+++..|.||+=+.. |.....+++.+.+.++.+. +..+ +..+|+-+.. +.++....
T Consensus 87 K~~Ea~~Ai~~GAdEID~Vin~----------~~l~~g~~~~v~e~~~~i~~~~~~~~-~~~lKVIlEt~~L~~~e~i~~ 155 (256)
T d2a4aa1 87 VLNDTEKALDDGADEIDLVINY----------KKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIK 155 (256)
T ss_dssp HHHHHHHHHHHTCSEEEEECCH----------HHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEeccH----------HHHhcCcHHHHHHHHHHHHHHHhhcc-CCeeEeeehhhhcCcHHHHHH
Confidence 3445555666668888853211 2222235666666544443 3322 3445654421 22233333
Q ss_pred H-HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh------------CCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 291 A-RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA------------LTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 291 a-~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~------------~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
+ ....++|+|+|-- .. |+..+.+..+.+..+++. -++.|=++|||+|.+++.+++ ..|++
T Consensus 156 ~~~~~~~aGadFVKT----ST--G~~~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i-~~g~~ 228 (256)
T d2a4aa1 156 TTLAVLNGNADFIKT----ST--GKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYI-LLARR 228 (256)
T ss_dssp HHHHHHTTTCSEEEC----CC--SCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHH-HHHHH
T ss_pred HHHHHHhcccHHHHh----cc--CCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHH-HHHHH
Confidence 3 3456889999853 11 223334555444433322 267899999999999999999 56776
Q ss_pred EEEeccccccCccccc
Q psy7343 358 GVMTAEGNLYNPALFT 373 (487)
Q Consensus 358 ~VmiGRa~l~~P~lf~ 373 (487)
.+ |-.. .+|..|+
T Consensus 229 ~l--G~~~-~~~~~fR 241 (256)
T d2a4aa1 229 FL--SSLA-CHPDNFR 241 (256)
T ss_dssp HT--C-------CCEE
T ss_pred hc--cccc-ccCCcee
Confidence 43 2222 2566665
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.32 E-value=0.042 Score=49.01 Aligned_cols=86 Identities=16% Similarity=0.233 Sum_probs=56.7
Q ss_pred eeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~ 285 (487)
+.+-+...+.++..+.++.+.+..+.|+++..- ... +| ++. ++++++..+.+|+.-..+. |+.
T Consensus 5 i~lAlD~~~~~~a~~l~~~~~~~v~~iKig~~l---~~~---~G------~~~----v~~l~~~~~~~i~~D~K~~-DIg 67 (212)
T d1km4a_ 5 LILAMDLMNRDDALRVTGEVREYIDTVKIGYPL---VLS---EG------MDI----IAEFRKRFGCRIIADFAVA-DIP 67 (212)
T ss_dssp EEEEECCSSHHHHHHHHHHHTTTCSEEEEEHHH---HHH---HC------THH----HHHHHHHHCCEEEEEEEEC-SCH
T ss_pred eEEEecCCCHHHHHHHHHHhCCCCcEEEECHHH---HHh---cC------HHH----HHHHHHhcccceehhhhhh-ccc
Confidence 444455567788888888888888888886321 111 12 333 3445666678888755444 554
Q ss_pred -cHHHHHHHHHHcCCcEEEEEccc
Q psy7343 286 -KTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 286 -~~~e~a~~le~~G~d~I~VhgRt 308 (487)
+....++.+.+.|+|.++||+-.
T Consensus 68 ~t~~~~~~~~~~~gad~~TVh~~~ 91 (212)
T d1km4a_ 68 ETNEKICRATFKAGADAIIVHGFP 91 (212)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESTT
T ss_pred cHHHHhHhhhccccccEEEEeccC
Confidence 34566788889999999999843
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=95.31 E-value=0.018 Score=56.56 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC--CHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA--SWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~--~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..+.++.+.++|+|.|.|..- .|.. ..+.++++++.. ++|||+ |+|.|++.++.++ +.|||+|-+|
T Consensus 151 ~~~~ra~~L~~aG~D~ivID~A--------hG~s~~~~~~i~~ik~~~~~v~vIa-GNV~T~e~a~~L~-~~GaD~VkVG 220 (388)
T d1eepa_ 151 DTIERVEELVKAHVDILVIDSA--------HGHSTRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLI-SVGADCLKVG 220 (388)
T ss_dssp THHHHHHHHHHTTCSEEEECCS--------CCSSHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHH-TTTCSEEEEC
T ss_pred HHHHHHHHHHhhccceeeeecc--------ccchHHHHHHHHHHHHHCCCCceee-ccccCHHHHHHHH-hcCCCeeeec
Confidence 5677788899999999999321 1212 247888888765 788887 9999999999999 7899999988
Q ss_pred cc
Q psy7343 363 EG 364 (487)
Q Consensus 363 Ra 364 (487)
-|
T Consensus 221 iG 222 (388)
T d1eepa_ 221 IG 222 (388)
T ss_dssp SS
T ss_pred cc
Confidence 64
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.29 E-value=0.053 Score=52.61 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=65.0
Q ss_pred ChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC--CHHHHHHHHhhC
Q psy7343 255 DWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA--SWEHITAVRKAL 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~--~~~~i~~i~~~~ 331 (487)
.++...+.++.+++.. ...+.+.+... .+..+.++.+.++|+|.|.|.. . .|.. ..+.++++++..
T Consensus 78 ~~~e~~~~~~~~~~~~~~~~v~aavGv~---~~~~er~~~l~~agvd~ivID~--A------~G~s~~~~~~i~~ik~~~ 146 (365)
T d1zfja1 78 SITEQAEEVRKVKRSEGRLLVAAAVGVT---SDTFERAEALFEAGADAIVIDT--A------HGHSAGVLRKIAEIRAHF 146 (365)
T ss_dssp CHHHHHHHHHHHHHHTSCBCCEEEECSS---TTHHHHHHHHHHHTCSEEEECC--S------CTTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHhhhhhhccCceEEEEEeccC---chHHHHHHHHHHcCCCEEEEEC--C------cccccchhHHHHHHHhhC
Confidence 4555555555554443 23445544222 2456777888899999999831 1 1111 236788888776
Q ss_pred -CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 332 -TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 332 -~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
++|||+ |+|.|++.+++++ +.|||+|-+|-|
T Consensus 147 ~~~~iIa-GNV~T~e~a~~L~-~aGaD~VkVGiG 178 (365)
T d1zfja1 147 PNRTLIA-GNIATAEGARALY-DAGVDVVKVGIG 178 (365)
T ss_dssp SSSCEEE-EEECSHHHHHHHH-HTTCSEEEECSS
T ss_pred CCcceee-cccccHHHHHHHH-hcCCceEEeeec
Confidence 788886 9999999999999 799999988853
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=95.27 E-value=0.055 Score=51.75 Aligned_cols=96 Identities=21% Similarity=0.341 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC--CHHHHHHHHhhC-
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA--SWEHITAVRKAL- 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~--~~~~i~~i~~~~- 331 (487)
+++...+.++.+++. ..++.+.+.+.+ +..+.++.+.+.|+|.+.|..- .|.. ..+.++.+++..
T Consensus 71 ~~e~~~~~i~~vk~~-~~~v~~~vgv~~---~~~e~~~~li~agvd~ivId~A--------~G~~~~~~~~ik~ik~~~~ 138 (330)
T d1vrda1 71 TPDEQARQVSIVKKT-RLLVGAAVGTSP---ETMERVEKLVKAGVDVIVIDTA--------HGHSRRVIETLEMIKADYP 138 (330)
T ss_dssp CHHHHHHHHHHHHTC-CBCCEEEECSST---THHHHHHHHHHTTCSEEEECCS--------CCSSHHHHHHHHHHHHHCT
T ss_pred chhhhHHHHHHHhhh-ccEEEEEEecCH---HHHHHHHHHHHCCCCEEEEecC--------CCCchhHHHHHHHHHHhCC
Confidence 566666666666643 445555553322 3566778888999999998311 1111 236778887765
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
++||++ |+|.|.+.+++++ +.|||+|-+|-|
T Consensus 139 ~~~via-GnV~t~~~a~~l~-~~GaD~v~VGig 169 (330)
T d1vrda1 139 DLPVVA-GNVATPEGTEALI-KAGADAVKVGVG 169 (330)
T ss_dssp TSCEEE-EEECSHHHHHHHH-HTTCSEEEECSS
T ss_pred CCCEEe-echhHHHHHHHHH-HcCCCEEeeccc
Confidence 788887 8999999999988 789999988754
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=95.27 E-value=0.039 Score=49.45 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=66.2
Q ss_pred HHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCC
Q psy7343 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGN 340 (487)
Q Consensus 261 eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGg 340 (487)
++++.+++. +++.=+|.. +.++...+++.+.+.|+..|-|.-|+ +..++.++++++...--+++.|.
T Consensus 6 ~~~~~l~~~---~iipvlr~~-~~~~~~~~~~al~~~Gi~~iEitl~~---------~~a~~~I~~l~~~~p~~~vGaGT 72 (212)
T d1vhca_ 6 QIIEKLREL---KIVPVIALD-NADDILPLADTLAKNGLSVAEITFRS---------EAAADAIRLLRANRPDFLIAAGT 72 (212)
T ss_dssp HHHHHHHHH---CEEEEECCS-SGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCTTCEEEEES
T ss_pred HHHHHHHHC---CEEEEEeCC-CHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHhcCCCceEeeee
Confidence 455555543 344444443 67789999999999999999996553 33468899998877446789999
Q ss_pred CCCHHHHHHHHHhcCCcEEE
Q psy7343 341 IQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 341 I~s~~da~~~l~~~Gad~Vm 360 (487)
|.|.++++++. +.||+.++
T Consensus 73 V~~~~~~~~a~-~aGa~Fiv 91 (212)
T d1vhca_ 73 VLTAEQVVLAK-SSGADFVV 91 (212)
T ss_dssp CCSHHHHHHHH-HHTCSEEE
T ss_pred cccHHHHHHHH-hhCCcEEE
Confidence 99999999999 78999887
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.11 Score=45.87 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=94.8
Q ss_pred eeecc-CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccccc
Q psy7343 208 IQFCG-NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK 286 (487)
Q Consensus 208 Vqi~g-~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~ 286 (487)
+||+| .+.++...+++. .+|.+-+++ .|. ..|+ -+++.+.++++.++ ..+|.+- -..+
T Consensus 3 ~KICGIt~~~d~~~~~~~---gaD~iGfif-~~~----SpR~-----Vs~~~a~~i~~~~~---~~~V~Vf-----v~~~ 61 (198)
T d1piia1 3 NKVCGLTRGQDAKAAYDA---GAIYGGLIF-VAT----SPRC-----VNVEQAQEVMAAAP---LQYVGVF-----RNHD 61 (198)
T ss_dssp CEECCCCSHHHHHHHHHH---TCSEEEEEC-CTT----CTTB-----CCHHHHHHHHHHCC---CEEEEEE-----SSCC
T ss_pred ceEcCCCcHHHHHHHHhC---CCCEEEEEc-cCC----CCCC-----cCHHHHHHhhhhcc---cccceee-----eccc
Confidence 57887 456665554443 256666665 332 1221 25777788766542 1122222 2235
Q ss_pred HHHHHHHHHHcCCcEEEEEcccc-----------------------------------------CCCCCCCCCCCHHHHH
Q psy7343 287 TVEYARMLERAGCQLLAVHGRTV-----------------------------------------DQRGMNTGLASWEHIT 325 (487)
Q Consensus 287 ~~e~a~~le~~G~d~I~VhgRt~-----------------------------------------~~~g~~~g~~~~~~i~ 325 (487)
..++.+.++..++|.|.+||.-. ...|+..-..+|+.+.
T Consensus 62 ~~~i~~~~~~~~~d~iQlHG~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lld~~~gGtG~~fdw~~~~ 141 (198)
T d1piia1 62 IADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLN 141 (198)
T ss_dssp HHHHHHHHHHHTCSEEEECSCCCHHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCCCCGGGGT
T ss_pred hhhHHHhhhcccccceeecCCccHHHHHHHhccccccccceeccchhhhhhHHHhhhhcccccCCcccccceeeehhhhc
Confidence 67777888899999999998320 0111222234787643
Q ss_pred HHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHc
Q psy7343 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQY 393 (487)
Q Consensus 326 ~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~ 393 (487)
.....|++.+||| +++.+.+++ ++++.+|-+.+|.-.+|-. . ..+.++++++.++.|
T Consensus 142 ---~~~~~~~~LAGGl-~~~Nv~~a~-~~~p~gvDvsSGvE~~pG~-K-----D~~ki~~f~~~vr~~ 198 (198)
T d1piia1 142 ---GQSLGNVLLAGGL-GADNCVEAA-QTGCAGLDFNSAVESQPGI-K-----DARLLASVFQTLRAY 198 (198)
T ss_dssp ---TSCCTTEEEESSC-CTTTHHHHH-TTCCSEEEECGGGEEETTE-E-----CHHHHHHHHHHHHCC
T ss_pred ---ccccceeEEecCC-CHHHHHHHH-hcCCCEEEeCCcccCCCCC-c-----CHHHHHHHHHHHhcC
Confidence 3346789999999 789999998 6899999999999888765 1 124455666555443
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.02 E-value=0.17 Score=45.38 Aligned_cols=147 Identities=9% Similarity=0.069 Sum_probs=85.8
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.|+-+-+...+|+.+.+ .+.++ |. ..+..|.. ..+.....+.++.+++. ++.+.+-+...
T Consensus 60 ~~~~~dvHLMv~~P~~~i~---~~~~~--------~~-~~i~~~~~-----~~~~~~~~~~i~~i~~~-g~~~Gial~p~ 121 (221)
T d1tqxa_ 60 KSIFFDVHLMVEYPEKYVP---LLKTS--------NQ-LTFHFEAL-----NEDTERCIQLAKEIRDN-NLWCGISIKPK 121 (221)
T ss_dssp SSCEEEEEEESSCGGGGGG---GCTTS--------SE-EEEEGGGG-----TTCHHHHHHHHHHHHTT-TCEEEEEECTT
T ss_pred CchhhhhhHHhhhhhhhhh---hhhhc--------Cc-eeEEeehh-----ccccchhhHHHHHHHhc-CCeEEEeeccc
Confidence 4567778887778776543 22222 11 12222221 12445555666666654 55555555222
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
. ....+...+....+|.|.+-+-.....|..-.+..++.++++++.. ++.|..-|||+ .+.+..+. +.|||.+.
T Consensus 122 t---~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn-~~~i~~l~-~aGad~iV 196 (221)
T d1tqxa_ 122 T---DVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLN-IETTEISA-SHGANIIV 196 (221)
T ss_dssp S---CGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCC-HHHHHHHH-HHTCCEEE
T ss_pred c---ccccchhhcccccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceEEEcccC-HHhHHHHH-HcCCCEEE
Confidence 1 2333334444456999988543221111111123457788888765 68899999996 46788888 79999999
Q ss_pred eccccccCccc
Q psy7343 361 TAEGNLYNPAL 371 (487)
Q Consensus 361 iGRa~l~~P~l 371 (487)
+|++++.+++.
T Consensus 197 ~GS~if~~~d~ 207 (221)
T d1tqxa_ 197 AGTSIFNAEDP 207 (221)
T ss_dssp ESHHHHTCSSH
T ss_pred EChHHHCCCCH
Confidence 99998776543
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=94.98 E-value=0.16 Score=47.16 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=87.0
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecC-CCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIG-CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC 276 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~G-cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v 276 (487)
..+.||++=+- | .++.+..+.++.++++ ..+|.|.=. .|.....+..-...+...-+....+..++....+..+.+
T Consensus 74 ~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i 153 (275)
T d1s2wa_ 74 ASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCI 153 (275)
T ss_dssp TCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEE
T ss_pred ccCCceeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeE
Confidence 45799999986 3 3788888888887776 777777532 221111111101112222233444444443344566777
Q ss_pred Eeecc-----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh--hCCCcEEEcCCCCCHHHHHH
Q psy7343 277 KIRIY-----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK--ALTIPVIANGNIQCLADVEA 349 (487)
Q Consensus 277 KiR~~-----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~--~~~iPVi~nGgI~s~~da~~ 349 (487)
..|.. .+.++..+-++...++|+|.|.++|.... .+.+..+.. ...+|+.+|.+-...-.+.+
T Consensus 154 ~ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~~~~~~~----------~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~e 223 (275)
T d1s2wa_ 154 VARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKKAD----------PSDIEAFMKAWNNQGPVVIVPTKYYKTPTDH 223 (275)
T ss_dssp EEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCSSS----------SHHHHHHHHHHTTCSCEEECCSTTTTSCHHH
T ss_pred EecchhhhhcCCHHHHHHHHHHHHhcCCCeeeeccccCc----------HHHHHHHHHhhcCCCCEEEecccccccHHHH
Confidence 76653 23456777778888999999999776321 233333333 35788888743211112334
Q ss_pred HHHhcCCcEEEeccc
Q psy7343 350 CLAQTGVAGVMTAEG 364 (487)
Q Consensus 350 ~l~~~Gad~VmiGRa 364 (487)
+- +.|+..|..|-.
T Consensus 224 L~-~lGv~~v~~g~~ 237 (275)
T d1s2wa_ 224 FR-DMGVSMVIWANH 237 (275)
T ss_dssp HH-HHTCCEEEECSH
T ss_pred HH-HcCCCEEEEchH
Confidence 44 689999988753
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.058 Score=48.27 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=64.5
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l 351 (487)
-||+.=+|.. |.++..++++.+.+.|+..|-|.-|+ +.-.+.++++++...--+++.|.|.|.+++++++
T Consensus 15 ~~iipvlr~~-~~~~a~~~~~al~~~Gi~~iEitl~t---------p~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~ 84 (213)
T d1wbha1 15 GPVVPVIVVK-KLEHAVPMAKALVAGGVRVLNVTLRT---------ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVT 84 (213)
T ss_dssp CSEEEEECCS-SGGGHHHHHHHHHHTTCCEEEEESCS---------TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHH
T ss_pred CCEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHHCCCCeeeccccccHHHHHHHH
Confidence 4676666664 77899999999999999999995443 2346889999988644579999999999999999
Q ss_pred HhcCCcEEEe
Q psy7343 352 AQTGVAGVMT 361 (487)
Q Consensus 352 ~~~Gad~Vmi 361 (487)
+.||+.++.
T Consensus 85 -~aGa~FivS 93 (213)
T d1wbha1 85 -EAGAQFAIS 93 (213)
T ss_dssp -HHTCSCEEE
T ss_pred -HCCCcEEEC
Confidence 789998873
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=94.78 E-value=0.038 Score=50.07 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=39.0
Q ss_pred CHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 320 SWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 320 ~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
+.+.+..+++.. ++|++..+||+|++++.++. .+||||.+|.++..++
T Consensus 168 ~~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~--~~ADgVVVGSAiv~~i 216 (229)
T d1viza_ 168 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA--EHADVIVVGNAVYEDF 216 (229)
T ss_dssp CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH--TTCSEEEECTHHHHCH
T ss_pred cchhHHHHHhhccCcceEEEcccCCHHHHHHHH--cCCCEEEECHHHHhhH
Confidence 346667776665 69999999999999999976 4899999999976543
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.098 Score=47.13 Aligned_cols=87 Identities=11% Similarity=0.218 Sum_probs=56.7
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.|++|-+...+.++..++++.+....+++.++ .|. +.. +| . ++++.+++ .+.+|+.-..+.
T Consensus 3 ~~~iivALD~~~~~eal~i~~~l~~~i~~iKiG--~~l-~~~---~G------~----~~i~~l~~-~~~~if~D~K~~- 64 (231)
T d1eixa_ 3 NSPVVVALDYHNRDDALAFVDKIDPRDCRLKVG--KEM-FTL---FG------P----QFVRELQQ-RGFDIFLDLKFH- 64 (231)
T ss_dssp CCCEEEEECCSSHHHHHHHHTTSCTTTCEEEEE--HHH-HHH---HH------H----HHHHHHHH-TTCCEEEEEEEC-
T ss_pred CCCEEEEEcCCCHHHHHHHHHHhCCcceEEEEC--HHH-Hhh---cC------H----HHHHHHHh-cCchhhHhhHhh-
Confidence 468888887777888888887776666777764 221 111 11 2 34455554 467887755444
Q ss_pred ccc-cHHHHHHHHHHcCCcEEEEEcc
Q psy7343 283 DVN-KTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 283 d~~-~~~e~a~~le~~G~d~I~VhgR 307 (487)
|+. +....++.+.+.|++.++||+-
T Consensus 65 DI~nt~~~~~~~~~~~~~~~~tvh~~ 90 (231)
T d1eixa_ 65 DIPNTAAHAVAAAADLGVWMVNVHAS 90 (231)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEBGG
T ss_pred cCcHHHHHHHHhhhcccceEEEEecc
Confidence 543 4456677788889999999974
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=94.75 E-value=0.091 Score=49.03 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=91.8
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEE--eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcE
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV 274 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~Id--iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV 274 (487)
.++|++..+. |-+++++.+++..+... .|.|. =|++.|.. +.+.++-+.+.+.++...+.++-..
T Consensus 17 ~~RPL~~tiiKPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~--------~p~~eRv~~~~~a~~~a~~~TG~~~ 88 (283)
T d1ykwa1 17 HGRPIFFGVVKPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVTW--------SSIEERAAHLGKARRKAEAETGEPK 88 (283)
T ss_dssp CSSCEEEEECSSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTT--------BCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCCC--------ccHHHHHHHHHHHHHHHHHHhCCee
Confidence 4689877664 67899999988766554 45442 12222111 1122334555555555555565444
Q ss_pred EEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC------------CCC
Q psy7343 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG------------NIQ 342 (487)
Q Consensus 275 ~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG------------gI~ 342 (487)
..-..+..+.++..+-++.+.+.|++++||..- ..-|..++.+++..++||.+-. ||
T Consensus 89 lya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~----------~~G~~a~~~l~~~~~lpi~~H~a~~g~~~r~~~~Gi- 157 (283)
T d1ykwa1 89 IYLANITDEVDSLMEKHDVAVRNGANALLINAL----------PVGLSAVRMLSNYTQVPLIGHFPFIASFSRMEKYGI- 157 (283)
T ss_dssp EEEEECCCCGGGHHHHHHHHHHHTCCEEEEEHH----------HHCHHHHHHHHHHCSSCEEEECTTTHHHHCSTTSEE-
T ss_pred EEeeecCCCHHHHHHHHHHHHHhCCCEEEEecc----------cchHHHHHHHHhhcCCCeEeeeccceeeccCcCCCc-
Confidence 443333557788899999999999999999321 1226778888888899999832 34
Q ss_pred CHHHHHHHHHhcCCcEEEec
Q psy7343 343 CLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiG 362 (487)
+..-..++....|+|.+.++
T Consensus 158 s~~vl~KL~RLaGaD~ih~~ 177 (283)
T d1ykwa1 158 HSKVMTKLQRLAGLDAVIMP 177 (283)
T ss_dssp CHHHHHHHHHHHTCSEEEEE
T ss_pred cHHHHHHHHHHcCCCceeec
Confidence 34446677767899999987
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=94.71 E-value=0.13 Score=46.84 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHc-CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC
Q psy7343 255 DWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERA-GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~-G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~ 331 (487)
+++.-.+.++++++.+ ++++.+-.--+++..+..++++.+++. ++.++-= -....+++..+++++.+
T Consensus 48 ~~~~di~~v~avr~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~~i~~~Ee----------P~~~~d~~~~~~l~~~~ 117 (256)
T d2gdqa1 48 SFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLEE----------PLPFDQPQDYAMLRSRL 117 (256)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEEEC----------CSCSSCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHcCCCeEEeeccccCCCHHHHHHHHHHHhhcCceeEecc----------ccccchHHHHHHHhhcc
Confidence 3444455667777766 455555443356667777888888773 4554421 11234788999999999
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++||.+.-.+.+.+++.++++...+|.+++
T Consensus 118 ~ipIa~gE~~~~~~~~~~~i~~~a~di~~~ 147 (256)
T d2gdqa1 118 SVPVAGGENMKGPAQYVPLLSQRCLDIIQP 147 (256)
T ss_dssp SSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred cceeecCccccchhhHHHHHHhhcceeeec
Confidence 999998888999999999997777787754
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=94.68 E-value=0.11 Score=47.65 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeec-cc------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRI-YQ------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~-~~------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~ 328 (487)
.+.+.+++++.. ..++|+++-.-. +. +.+.....++...+.|+|.|-+ +|.+ +.+.+.++.
T Consensus 122 l~~~~~v~~e~~-~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~---------~~p~--~~~~~~~~v 189 (251)
T d1ojxa_ 122 FEELARIKRDAV-KFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKI---------KYTG--DPKTFSWAV 189 (251)
T ss_dssp HHHHHHHHHHHH-HHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEE---------CCCS--SHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEe---------cCCC--cHHHHHHHH
Confidence 344555555443 348998875322 11 2234556678888999999988 1433 344555544
Q ss_pred -hhCCCcEEEcCCCC--CHHHHHHHHH---hcCCcEEEeccccccCc
Q psy7343 329 -KALTIPVIANGNIQ--CLADVEACLA---QTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 329 -~~~~iPVi~nGgI~--s~~da~~~l~---~~Gad~VmiGRa~l~~P 369 (487)
....+||+..||-. +.+++.+..+ +.||.|+.+||.+...+
T Consensus 190 ~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~ 236 (251)
T d1ojxa_ 190 KVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRR 236 (251)
T ss_dssp HHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTST
T ss_pred HhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcC
Confidence 45678887776654 5777665543 36999999999987553
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.26 Score=45.85 Aligned_cols=142 Identities=17% Similarity=0.268 Sum_probs=90.2
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccc--cCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
..||.+.+. +.+.+...++. ...|+-|-+. |+.+ ..+-+...++++..+. .+++|-+-+-
T Consensus 73 ~vpV~lHlDH~~~~e~i~~ai---~~GftSVMiD-------------~S~lp~eeNi~~t~~vv~~ah~-~gv~VE~ElG 135 (284)
T d1gvfa_ 73 NMPLALHLDHHESLDDIRRKV---HAGVRSAMID-------------GSHFPFAENVKLVKSVVDFCHS-QDCSVEAELG 135 (284)
T ss_dssp TSCBEEEEEEECCHHHHHHHH---HTTCCEEEEC-------------CTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEES
T ss_pred CCeEEeeeccccchHHHHHHH---hcCCCeEEEE-------------CCCCCHHHHHHHHHHHHHHHHh-hccceeeeee
Confidence 578999887 56655444432 2223333222 2222 3455566666665443 4666666432
Q ss_pred c-cc-------c-----cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC--CHHHHHHHHhhCCCcEEEcCCCCCH
Q psy7343 280 I-YQ-------D-----VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA--SWEHITAVRKALTIPVIANGNIQCL 344 (487)
Q Consensus 280 ~-~~-------d-----~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~--~~~~i~~i~~~~~iPVi~nGgI~s~ 344 (487)
. ++ + ..+..++.+..+++|+|.+.|.-.|.... |.+.+ +++.++++++.+++|++.=|+=..+
T Consensus 136 ~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~--y~~~p~l~~~~L~~i~~~~~vPLVlHGgSG~~ 213 (284)
T d1gvfa_ 136 RLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGL--YSKTPKIDFQRLAEIREVVDVPLVLHGASDVP 213 (284)
T ss_dssp CCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSC--CSSCCCCCHHHHHHHHHHCCSCEEECCCTTCC
T ss_pred eeccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCceeec--cCCCCccccchhhhhhccccCCeEeeCCCCCC
Confidence 2 11 0 13678888889999999999843333322 55544 6799999999999999987766555
Q ss_pred H-HHHHHHHhcCCcEEEeccc
Q psy7343 345 A-DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 345 ~-da~~~l~~~Gad~VmiGRa 364 (487)
+ ++.+++ ..|+.-|=|++.
T Consensus 214 ~e~i~~ai-~~Gi~KiNi~T~ 233 (284)
T d1gvfa_ 214 DEFVRRTI-ELGVTKVNVATE 233 (284)
T ss_dssp HHHHHHHH-HTTEEEEEECHH
T ss_pred HHHHHHHH-HcCeEEEEechH
Confidence 5 567777 789988888874
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.65 E-value=0.19 Score=47.14 Aligned_cols=109 Identities=20% Similarity=0.204 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC---CCC-CCCCCCCH----HHHHH
Q psy7343 256 WPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD---QRG-MNTGLASW----EHITA 326 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~---~~g-~~~g~~~~----~~i~~ 326 (487)
.+...+-++.+++.. ..++.++...+.+.++..+.++.+++.|+|+|.++---.. .++ ++.-..+. +.++.
T Consensus 86 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~ 165 (312)
T d1gtea2 86 AAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRW 165 (312)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHH
Confidence 344444455555544 4456666655666778899999999999999998421111 110 01001122 55666
Q ss_pred HHhhCCCcEEE--cCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 327 VRKALTIPVIA--NGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 327 i~~~~~iPVi~--nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+++.+++||+. ..++.+..++.+.+++.|+|++.+.-.
T Consensus 166 v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~ 205 (312)
T d1gtea2 166 VRQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNT 205 (312)
T ss_dssp HHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECCC
T ss_pred HhhccCCceeecccccchhHHHHHHHHHHhcccceEEEee
Confidence 77788999884 677888888888888899999987643
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=94.64 E-value=0.032 Score=53.59 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=64.5
Q ss_pred CCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcE
Q psy7343 203 DRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV 274 (487)
Q Consensus 203 ~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV 274 (487)
+.|+.|.+. +.+.++..+.++.+++. .|.+++..|........ ..+....++.+.+|+.+++||
T Consensus 208 ~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~--------~~~~~~~~~~~~ik~~~~~pv 279 (337)
T d1z41a1 208 DGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADIN--------VFPGYQVSFAEKIREQADMAT 279 (337)
T ss_dssp CSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCC--------CCTTTTHHHHHHHHHHHCCEE
T ss_pred cccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccccc--------cCCcccHHHHHHHHHhcCceE
Confidence 568888765 45778888999988777 89999988873211100 112223445666788889999
Q ss_pred EEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 275 ~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
++.+ .+.+.....+.+++-.+|.|.+ ||.
T Consensus 280 i~~G----~i~~~~~ae~~l~~g~~D~V~~-gR~ 308 (337)
T d1z41a1 280 GAVG----MITDGSMAEEILQNGRADLIFI-GRE 308 (337)
T ss_dssp EECS----SCCSHHHHHHHHHTTSCSEEEE-CHH
T ss_pred EEeC----CcCCHHHHHHHHHCCCcceehh-hHH
Confidence 9987 4446666666677666999999 884
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.066 Score=49.88 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=77.9
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++-+-- .+..+..+.+
T Consensus 20 D~~~~~~~i~~l~~~--------Gv-~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~-~s~~~~i~~~ 89 (292)
T d2a6na1 20 CRASLKKLIDYHVAS--------GT-SAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGA-NATAEAISLT 89 (292)
T ss_dssp CHHHHHHHHHHHHHH--------TC-CEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeeccc-chHHHHHHHh
Confidence 667777777766555 44 3445555556554233444455565555544 4788887521 1345678888
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA-N-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..-.. .. .+...-+++++++.+++++||+. | |--.+++.+.++.
T Consensus 90 ~~a~~~Gad~~~~~pP~~-~~--~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~ 152 (292)
T d2a6na1 90 QRFNDSGIVGCLTVTPYY-NR--PSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLA 152 (292)
T ss_dssp HTTTTSSCCEEEEECCCS-SC--CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred ccHHhcCCcceeccCCCC-CC--CCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHHHHHHh
Confidence 888899999999954211 00 11112357788888999999874 2 5557788777765
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=94.60 E-value=0.03 Score=50.27 Aligned_cols=145 Identities=11% Similarity=0.075 Sum_probs=83.6
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcce---e-eccCc-----cccccCChHHHHHHHHH--------
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMV---A-KRGHY-----GAYLQDDWPLLTNLVSS-------- 265 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i---~-~~gr~-----G~~l~~d~~~i~eiv~~-------- 265 (487)
.+++.=+++.+.++..+.++.+.+. ...|||-+..|... . .+..+ |..-.-+.+.+.+.+++
T Consensus 14 ~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP 93 (212)
T d1vhca_ 14 LKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP 93 (212)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECC
Confidence 3566667777777777777766554 77777776665410 0 00011 11002244444443321
Q ss_pred ---------HhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcE
Q psy7343 266 ---------LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPV 335 (487)
Q Consensus 266 ---------v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPV 335 (487)
.++ .++|++= ...+..|+.. +.+.|++.|-+..-. . .. -..+++.++.-+ ++++
T Consensus 94 ~~~~~v~~~a~~-~~i~~iP------Gv~TpsEi~~-A~~~G~~~vK~FPA~--~---~g---G~~~lkal~~p~p~~~~ 157 (212)
T d1vhca_ 94 GLNPKIVKLCQD-LNFPITP------GVNNPMAIEI-ALEMGISAVKFFPAE--A---SG---GVKMIKALLGPYAQLQI 157 (212)
T ss_dssp SCCHHHHHHHHH-TTCCEEC------EECSHHHHHH-HHHTTCCEEEETTTT--T---TT---HHHHHHHHHTTTTTCEE
T ss_pred CCCHHHHHHHHh-cCCCccC------CcCCHHHHHH-HHHCCCCEEEEcccc--c---cc---hHHHHHHHhccccCCeE
Confidence 111 1333322 2335555554 446799998882210 0 11 246778877766 7999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+..|||. .+++.+.+ ..|+-++.+|+.+.
T Consensus 158 ~ptGGV~-~~N~~~yl-~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 158 MPTGGIG-LHNIRDYL-AIPNIVACGGSWFV 186 (212)
T ss_dssp EEBSSCC-TTTHHHHH-TSTTBCCEEECGGG
T ss_pred EecCCCC-HHHHHHHH-hCCCEEEEEChhhC
Confidence 9999996 58899999 67888888887654
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=94.50 E-value=0.3 Score=45.18 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.0
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
++||++-+ .+.+..|+++.+ ..|||+|++ ||.
T Consensus 234 ~i~Ii~dG----GIr~g~Dv~KAL-alGAdaV~i-Gr~ 265 (310)
T d1vcfa1 234 HLPLVASG----GVYTGTDGAKAL-ALGADLLAV-ARP 265 (310)
T ss_dssp SSCEEEES----SCCSHHHHHHHH-HHTCSEEEE-CGG
T ss_pred CCeEEeCC----CCCchHHHHHHH-HhCCCEeeE-hHH
Confidence 78999987 788899999988 589999999 884
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=94.41 E-value=0.067 Score=48.14 Aligned_cols=49 Identities=16% Similarity=0.292 Sum_probs=36.9
Q ss_pred HHHHHHHHhh-----CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 321 WEHITAVRKA-----LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 321 ~~~i~~i~~~-----~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++.++++++. .++.|..-|||+. +.+.++. +.|||.+.+|++++.+++.
T Consensus 155 ~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~-~~Gad~~V~GS~if~~~d~ 208 (221)
T d1tqja_ 155 LPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVL-EAGANAIVAGSAVFNAPNY 208 (221)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHH-HHTCCEEEESHHHHTSSCH
T ss_pred HHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHH-HcCCCEEEEChHHhCCCCH
Confidence 3566665543 4688999999975 4677777 6899999999998776653
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.40 E-value=0.14 Score=45.88 Aligned_cols=142 Identities=12% Similarity=0.140 Sum_probs=83.0
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.|+-+-+...+|+.+.+.... ...+. ++.|-.. ..+.+.++++.+++. ++.+.+-+...
T Consensus 58 ~~~~~dvHLMv~~p~~~i~~~~~--~g~~~----------I~~H~E~------~~~~~~~~i~~i~~~-g~~~Glal~p~ 118 (220)
T d1h1ya_ 58 TKAYLDCHLMVTNPSDYVEPLAK--AGASG----------FTFHIEV------SRDNWQELIQSIKAK-GMRPGVSLRPG 118 (220)
T ss_dssp CCSEEEEEEESSCGGGGHHHHHH--HTCSE----------EEEEGGG------CTTTHHHHHHHHHHT-TCEEEEEECTT
T ss_pred cchhhhhHHHhcchhhhhHHhhh--cccce----------eeecccc------cchhHHHHHHHHHHc-CCCcceeeccc
Confidence 35677777887788766543222 22333 4444331 112233455555543 45555555333
Q ss_pred cccccHHHHHHHHHHc-CCcEEEEEccccCCCCCCCCC----CCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 282 QDVNKTVEYARMLERA-GCQLLAVHGRTVDQRGMNTGL----ASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~-G~d~I~VhgRt~~~~g~~~g~----~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
.+.+... ..+... -+|.|.+.+-.. ++.|. ..++.++++++.. +++|..-|||+. +.+..+. +.|
T Consensus 119 t~~~~~~---~~l~~~~~~d~vlim~v~P----G~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGIn~-~~i~~l~-~aG 189 (220)
T d1h1ya_ 119 TPVEEVF---PLVEAENPVELVLVMTVEP----GFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAA-SAG 189 (220)
T ss_dssp SCGGGGH---HHHHSSSCCSEEEEESSCT----TCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHH-HHT
T ss_pred cchhHHH---HHHhcccccceEEEEecCC----CCcccccchhhhHHHHHHHhcCCCceEEEEecCCH-HHHHHHH-HCC
Confidence 2333333 334433 379888843221 23332 2467788887754 799999999975 5777777 799
Q ss_pred CcEEEeccccccCccc
Q psy7343 356 VAGVMTAEGNLYNPAL 371 (487)
Q Consensus 356 ad~VmiGRa~l~~P~l 371 (487)
||.+.+|++++.+++.
T Consensus 190 ad~~V~GS~if~~~d~ 205 (220)
T d1h1ya_ 190 ANCIVAGSSIFGAAEP 205 (220)
T ss_dssp CCEEEESHHHHTSSCH
T ss_pred CCEEEECHHHHCCCCH
Confidence 9999999998776654
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.35 E-value=0.016 Score=52.62 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=37.9
Q ss_pred CHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 320 SWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 320 ~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.+.+.++++.+ ++||+..+||+|+++++++. + +||||.+|.++..
T Consensus 174 ~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~-~-~ADgvIVGSaive 220 (231)
T d2f6ua1 174 NPELVAEVKKVLDKARLFYGGGIDSREKAREML-R-YADTIIVGNVIYE 220 (231)
T ss_dssp CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHH-H-HSSEEEECHHHHH
T ss_pred hhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHH-h-cCCEEEEChHHhc
Confidence 456666666665 69999999999999999987 4 6999999998754
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=94.13 E-value=0.075 Score=47.62 Aligned_cols=77 Identities=18% Similarity=0.149 Sum_probs=62.0
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
||+.=+|.. +.++..+.++.+.+.|+..|-|.-|+ +..++.++.+++...--+++.|.|.|.++++++.
T Consensus 18 ~iipvl~~~-~~~~a~~~~~al~~~Gi~~iEitl~~---------p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~- 86 (216)
T d1mxsa_ 18 RILPVITIA-REEDILPLADALAAGGIRTLEVTLRS---------QHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVE- 86 (216)
T ss_dssp SEEEEECCS-CGGGHHHHHHHHHHTTCCEEEEESSS---------THHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHH-
T ss_pred CEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHH-
Confidence 455545444 77899999999999999999995442 3346889999888744578999999999999999
Q ss_pred hcCCcEEE
Q psy7343 353 QTGVAGVM 360 (487)
Q Consensus 353 ~~Gad~Vm 360 (487)
+.||+.++
T Consensus 87 ~aGa~Fiv 94 (216)
T d1mxsa_ 87 AAGAQFVV 94 (216)
T ss_dssp HHTCSSEE
T ss_pred hCCCCEEE
Confidence 78999776
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=93.96 E-value=0.25 Score=42.28 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=56.0
Q ss_pred HHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEE
Q psy7343 261 NLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA 337 (487)
Q Consensus 261 eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~ 337 (487)
+.++.+++.. ..+|.+-. ++..++ +.+.++|+|.||+. . + ..+.+++..+.+ ++.+-+
T Consensus 68 ~~~~~~~~~~~~~~IeVEv------~~~~~~-~~a~~~g~diImLD-N-------~----~pe~~~~av~~i~~~~~lEa 128 (167)
T d1qapa1 68 QAVEKAFWLHPDVPVEVEV------ENLDEL-DDALKAGADIIMLD-N-------F----NTDQMREAVKRVNGQARLEV 128 (167)
T ss_dssp HHHHHHHHHSTTSCEEEEE------SSHHHH-HHHHHTTCSEEEES-S-------C----CHHHHHHHHHTTCTTCCEEE
T ss_pred hhhHHHhhcCCCceEEEec------CcHHHH-HHHHhcCCcEEEec-C-------C----CHHHHHHHHHhcCCceEEEE
Confidence 3444444322 34555543 344554 44556899999991 1 1 234555544444 578889
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+|||+ .+.+.++. .+|+|.+.+|.-...-|+
T Consensus 129 SGgI~-~~ni~~ya-~~GVD~IS~galt~~a~~ 159 (167)
T d1qapa1 129 SGNVT-AETLREFA-ETGVDFISVGALTKHVRA 159 (167)
T ss_dssp CCCSC-HHHHHHHH-HTTCSEEECSHHHHEEEC
T ss_pred eCCCC-HHHHHHHH-HcCCCEEECCcccCCCCc
Confidence 99995 78888887 799999999965444343
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.076 Score=50.66 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=65.7
Q ss_pred cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc
Q psy7343 199 STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~ 270 (487)
....+.+|.+++- +.+.++..++++.+++. .|.+++..|........ ..... .......+.+.+++.+
T Consensus 204 ~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~--~~~~~--~~~~~~~~~~~ik~~~ 279 (330)
T d1ps9a1 204 RVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPT--IATPV--PRGAFSWVTRKLKGHV 279 (330)
T ss_dssp HHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCS--SSTTS--CTTTTHHHHHHHTTSC
T ss_pred HcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccc--cCCCC--cchhHHHHHHHHHhhC
Confidence 3455678888763 35678888999988876 88888877652111110 01111 1122344566788889
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
++||++.++ +.+...+.+.+++-.+|.|.+ ||.
T Consensus 280 ~~pvi~~G~----i~~~~~ae~~l~~g~~D~V~~-gR~ 312 (330)
T d1ps9a1 280 SLPLVTTNR----INDPQVADDILSRGDADMVSM-ARP 312 (330)
T ss_dssp SSCEEECSS----CCSHHHHHHHHHTTSCSEEEE-STH
T ss_pred CceEEEeCC----CCCHHHHHHHHHCCCcchhHh-hHH
Confidence 999999874 445666666666666999999 884
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.12 Score=48.15 Aligned_cols=133 Identities=11% Similarity=0.164 Sum_probs=81.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-..+.-.++++.+.+.+ ++|+++-+- +.+..+..+.+
T Consensus 21 D~~~l~~~i~~l~~~--------Gv-~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~~s~~~~i~~a 90 (295)
T d1hl2a_ 21 DKASLRRLVQFNIQQ--------GI-DGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG-CVSTAESQQLA 90 (295)
T ss_dssp CHHHHHHHHHHHHHH--------TC-SEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC-CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccc-cchhhHHHHHH
Confidence 667777777766555 44 3455556566655445666667777666655 578887541 22455788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh-CCCcEEE------cCCCCCHHHHHHHHHhcCCcEE
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA-LTIPVIA------NGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~-~~iPVi~------nGgI~s~~da~~~l~~~Gad~V 359 (487)
+.+++.|+|++++....... .+.....+.+.++.+. .++|++. .|--.+.+.+.++.+...+-++
T Consensus 91 ~~a~~~Gad~~~v~~p~~~~---~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~~pnvvgi 162 (295)
T d1hl2a_ 91 ASAKRYGFDAVSAVTPFYYP---FSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVTLPGVGAL 162 (295)
T ss_dssp HHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEE
T ss_pred HHHHhcCCceeeeeeccccC---CChHHHHHHHHHHhcccCcCcccccccccccccccccccccccccCcchhhh
Confidence 99999999999996542111 1111123455555554 4778774 4555688888887643334443
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.044 Score=49.14 Aligned_cols=147 Identities=12% Similarity=0.072 Sum_probs=89.0
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcce----eeccCc-----cccccCChHHHHHHHHH--------
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMV----AKRGHY-----GAYLQDDWPLLTNLVSS-------- 265 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i----~~~gr~-----G~~l~~d~~~i~eiv~~-------- 265 (487)
.|++.=++..|+++....++.+.+. ...|||-+-.|... ..+.++ |..-..+.+.+.+.+++
T Consensus 15 ~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP 94 (213)
T d1wbha1 15 GPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISP 94 (213)
T ss_dssp CSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEES
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECC
Confidence 5788888888888888888877665 88888877765410 000011 11112345555443332
Q ss_pred ---------HhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcE
Q psy7343 266 ---------LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPV 335 (487)
Q Consensus 266 ---------v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPV 335 (487)
.++ .++|++= ...+..|+.. ..++|++.+-+..-. ..| -..+++.++.-+ ++++
T Consensus 95 ~~~~~v~~~a~~-~~i~~iP------Gv~TpsEi~~-A~~~G~~~vKlFPA~------~~G--g~~~lkal~~p~p~~~~ 158 (213)
T d1wbha1 95 GLTEPLLKAATE-GTIPLIP------GISTVSELML-GMDYGLKEFKFFPAE------ANG--GVKALQAIAGPFSQVRF 158 (213)
T ss_dssp SCCHHHHHHHHH-SSSCEEE------EESSHHHHHH-HHHTTCCEEEETTTT------TTT--HHHHHHHHHTTCTTCEE
T ss_pred CCCHHHHHHHHh-cCCCccC------CcCCHHHHHH-HHHCCCCEEEeccch------hcC--hHHHHHHhcCcccCCce
Confidence 111 1233322 2335555554 456789988882110 011 135777777765 8999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+..|||. .+++.+.+ ..|+.++.+|+.+..+
T Consensus 159 ~ptGGV~-~~n~~~yl-~~g~v~~~~Gs~l~~~ 189 (213)
T d1wbha1 159 CPTGGIS-PANYRDYL-ALKSVLCIGGSWLVPA 189 (213)
T ss_dssp EEBSSCC-TTTHHHHH-TSTTBSCEEEGGGSCH
T ss_pred eeeCCCC-HHHHHHHH-hCCCEEEEEChhhCCh
Confidence 9999997 57899999 7889888888755433
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.80 E-value=0.24 Score=44.46 Aligned_cols=129 Identities=11% Similarity=0.121 Sum_probs=82.9
Q ss_pred CCeeeeec-cCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeec
Q psy7343 204 RPLIIQFC-GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRI 280 (487)
Q Consensus 204 ~Pv~Vqi~-g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~ 280 (487)
+|+...+. ..+++.+.+.++.+ ++.++.+-+-.|- + .|-+.+. ++++.+ ++.+.+-.--
T Consensus 5 v~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg~----------~----~D~~~v~----~ir~~~~d~~l~vD~n~ 66 (243)
T d1r0ma1 5 VEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKP----------G----WDVQPVR----ATREAFPDIRLTVDANS 66 (243)
T ss_dssp EEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECBT----------T----BSHHHHH----HHHHHCTTSCEEEECTT
T ss_pred EEeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcCc----------c----hhHHHHH----HHHHhccCceEEEeccc
Confidence 45666655 46788887766654 4456555443221 1 2444444 455554 3334433322
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+++..+...+ +.+++.++.++-= -....+++..+++++.+++||.+.-.+.+..++.++++...+|.++
T Consensus 67 ~~~~~~a~~~-~~l~~~~~~~iEe----------P~~~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~ 135 (243)
T d1r0ma1 67 AYTLADAGRL-RQLDEYDLTYIEQ----------PLAWDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVIN 135 (243)
T ss_dssp CCCGGGHHHH-HTTGGGCCSCEEC----------CSCTTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEE
T ss_pred cCchHHHHHh-hhhhhccchhhhh----------hccccchHHHHHHhhcCCcccccccchhhhhhhhhhhhccccccee
Confidence 4566666654 5677777776531 1123468889999999999999999999999999999777789887
Q ss_pred e
Q psy7343 361 T 361 (487)
Q Consensus 361 i 361 (487)
+
T Consensus 136 ~ 136 (243)
T d1r0ma1 136 L 136 (243)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.72 E-value=0.14 Score=45.92 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=82.6
Q ss_pred CCCeeeeec-cCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEee
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR 279 (487)
..||.+.+. ..+++++.+.++ .+++.++.+-|..|- ..|.+.+.. +++.+ ++.+.+-.-
T Consensus 4 ~ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg~--------------~~D~~~v~~----ir~~~~d~~l~vDaN 65 (241)
T d1wuea1 4 KIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRP--------------GYDVEPVAL----IRQHFPNLPLMVDAN 65 (241)
T ss_dssp EEECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECBT--------------TBSHHHHHH----HHHHCTTSCEEEECT
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcCc--------------cHHHHHHHH----HHHhccccceeeccc
Confidence 457777765 457777666554 445556655554331 135555444 44443 333333222
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+++..+...+. .+++.++.++- + + . ...+++..+++++..++||.+.-.+.+..++..+++...+|.+
T Consensus 66 ~~~~~~~a~~~~-~~~~~~i~~iE-------e-P-~-~~~~~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i 134 (241)
T d1wuea1 66 SAYTLADLPQLQ-RLDHYQLAMIE-------Q-P-F-AADDFLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSI 134 (241)
T ss_dssp TCCCGGGHHHHH-GGGGSCCSCEE-------C-C-S-CTTCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEE
T ss_pred ccCCHHHhhhhh-hhhhhhhhhhc-------C-c-c-cccchhhhhhhhcccccccccCcccccchhhhhhhhhhhhhhh
Confidence 245566666554 34566665542 1 1 1 2236788999999999999999999999999999977778999
Q ss_pred Eecc
Q psy7343 360 MTAE 363 (487)
Q Consensus 360 miGR 363 (487)
++--
T Consensus 135 ~~d~ 138 (241)
T d1wuea1 135 NLKI 138 (241)
T ss_dssp EECH
T ss_pred cccc
Confidence 8653
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.70 E-value=0.09 Score=45.28 Aligned_cols=95 Identities=12% Similarity=0.159 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEE
Q psy7343 259 LTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVI 336 (487)
Q Consensus 259 i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi 336 (487)
+.+.++.+++.. ..++.+-. +..+-++.+.++|+|.|++.. ++....-+.++.+++.- .+.+-
T Consensus 66 i~~~i~~~k~~~~~~~I~VEv-------~s~~q~~~a~~~~~diImLDN--------~sp~~~k~~v~~~~~~~~~i~lE 130 (169)
T d1qpoa1 66 VVDALRAVRNAAPDLPCEVEV-------DSLEQLDAVLPEKPELILLDN--------FAVWQTQTAVQRRDSRAPTVMLE 130 (169)
T ss_dssp HHHHHHHHHHHCTTSCEEEEE-------SSHHHHHHHGGGCCSEEEEET--------CCHHHHHHHHHHHHHHCTTCEEE
T ss_pred hhhhhhhhhhhcCCCceEEEe-------ccHHHhhhhhhcCCcEEEecC--------cChHhHHHHHHHhhccCCeeEEE
Confidence 345556666544 34566654 334445666678999999932 11111124444444443 57788
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
++||| +.+.+.++. .+|+|.+.+|.-...-|+
T Consensus 131 aSGgI-~~~ni~~ya-~~GvD~IS~galt~sa~~ 162 (169)
T d1qpoa1 131 SSGGL-SLQTAATYA-ETGVDYLAVGALTHSVRV 162 (169)
T ss_dssp EESSC-CTTTHHHHH-HTTCSEEECGGGTSSBCC
T ss_pred EeCCC-CHHHHHHHH-HcCCCEEECCccccCCCc
Confidence 99999 578888888 799999999954443344
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=93.68 E-value=0.86 Score=42.51 Aligned_cols=143 Identities=16% Similarity=0.234 Sum_probs=88.0
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee-c
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-I 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-~ 280 (487)
..||.+.+. +.+.+...++.+ ..|+- +-..+. .-.+..|.+...++++..+. .+++|-+-+- +
T Consensus 72 ~vpv~lHlDH~~~~e~i~~ai~---~GftS----------VMiDgS-~l~~eeNi~~Tk~vv~~Ah~-~gv~VEaElG~i 136 (305)
T d1rvga_ 72 RVPVAVHLDHGSSYESVLRALR---AGFTS----------VMIDKS-HEDFETNVRETRRVVEAAHA-VGVTVEAELGRL 136 (305)
T ss_dssp SSCEEEEEEEECSHHHHHHHHH---TTCSE----------EEECCT-TSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred CCcEEEeehhccChhhhHHHHh---cCCce----------EEEcCc-cccHHHHHHHHHHHHHHhch-hceeEEeeeeee
Confidence 578888887 556555444433 22322 222221 11224456677777775553 4777766432 2
Q ss_pred ccc------------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC----CCHHHHHHHHhhCCCcEEEcCCC---
Q psy7343 281 YQD------------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL----ASWEHITAVRKALTIPVIANGNI--- 341 (487)
Q Consensus 281 ~~d------------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~----~~~~~i~~i~~~~~iPVi~nGgI--- 341 (487)
++. ..++.++.+.++++|+|.+.|.=.+.-.. |.+. -+++.+++|++.+++|++.-|+=
T Consensus 137 gg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~--Yk~~~~~~l~~~~l~~I~~~~~~PLVlHGgS~vp 214 (305)
T d1rvga_ 137 AGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGA--YKGKGRPFIDHARLERIARLVPAPLVLHGASAVP 214 (305)
T ss_dssp CCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSS--BCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCC
T ss_pred ecccccccccccccccCCHHHHHHHHHHhCccHhhhhhhhhhcc--cCCCCcccchHHHHHHHHhccCCCeeccCCcccc
Confidence 211 13578888888999999998833332222 4432 47899999999999999988753
Q ss_pred -------------------CCHHHHHHHHHhcCCcEEEecc
Q psy7343 342 -------------------QCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 342 -------------------~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+.+++.+++ ..|+.-|=+++
T Consensus 215 ~~~~~~~~~~g~~lhg~sG~~~e~i~~ai-~~GV~KiNi~T 254 (305)
T d1rvga_ 215 PELVERFRASGGEIGEAAGIHPEDIKKAI-SLGIAKINTDT 254 (305)
T ss_dssp HHHHHHHHHTTCCCCSCBCCCHHHHHHHH-HTTEEEEEECH
T ss_pred HHHHhhhcccCcccCCCCCCCHHHHHHHH-HcCeEEEEeCh
Confidence 3356677777 56777666665
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=93.65 E-value=0.44 Score=43.55 Aligned_cols=148 Identities=13% Similarity=0.108 Sum_probs=83.3
Q ss_pred CchHHHHHHHHhCCccceeccccchhhhc-------ChhH---HHHHHhcCCCCCCeeeeec----cCCHHHHHHHHHhh
Q psy7343 160 SELPWRLLSRRYGSHLCYTPMVSAHQFIA-------DKKL---RQEILMSTPEDRPLIIQFC----GNDSKNLTEAAKLA 225 (487)
Q Consensus 160 td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~-------~~~~---~~~~l~~~~~~~Pv~Vqi~----g~d~~~~~~aa~~~ 225 (487)
.|.++..++.+.|+|++-..--.+..++- +.+. ..+.+++.....-+++-+- ....+...++++++
T Consensus 23 yd~~~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~~~~~~~~~a~~~~ 102 (260)
T d1o66a_ 23 YESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAEL 102 (260)
T ss_dssp CSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhcchhHHHHHHHHHH
Confidence 46778888899998886432111111110 0000 1111222222333444442 24556667776655
Q ss_pred CCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc----------------ccccHH
Q psy7343 226 EPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ----------------DVNKTV 288 (487)
Q Consensus 226 ~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~----------------d~~~~~ 288 (487)
.+. +|+|-+..|. ...+ +++++.+. +|||..-+.+.+ +.....
T Consensus 103 ~~~gadavk~eg~~---------------~~~~----~i~~l~~~-gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e~~~l~ 162 (260)
T d1o66a_ 103 MAAGAHMVKLEGGV---------------WMAE----TTEFLQMR-GIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALL 162 (260)
T ss_dssp HHTTCSEEEEECSG---------------GGHH----HHHHHHHT-TCCEEEEEESCGGGTTC-----------CHHHHH
T ss_pred HHhhhhhccccchh---------------hhhH----HHHHHHHc-CCeeEeecccccchheecCcceeccccchhHHHH
Confidence 444 4444443221 1233 34444433 899999765521 112467
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
+.++.+|++||.+|.+-+ ..-+..++|.+.++||+|+-|
T Consensus 163 ~~a~~le~AGa~~ivlE~------------Vp~~va~~It~~~~iptIgIG 201 (260)
T d1o66a_ 163 NDAKAHDDAGAAVVLMEC------------VLAELAKKVTETVSCPTIGIG 201 (260)
T ss_dssp HHHHHHHHTTCSEEEEES------------CCHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHhhhhehhhhh------------ccHHHHHHHHhhhcceeeecc
Confidence 788999999999999822 224678889999999999866
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.49 E-value=0.13 Score=49.97 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+..+.++.+.+.|++.+.++.-.. +. ....+.++.+++.. ++|||+ |+|.|++.+++++ +.|||+|-+|-|
T Consensus 119 ~~~~~~~~l~~agv~vi~id~a~g-----~~-~~~~~~i~~ik~~~~~~~iIa-GnVaT~e~a~~L~-~aGAD~VkVGiG 190 (378)
T d1jr1a1 119 DDKYRLDLLALAGVDVVVLDSSQG-----NS-IFQINMIKYMKEKYPNLQVIG-GNVVTAAQAKNLI-DAGVDALRVGMG 190 (378)
T ss_dssp HHHHHHHHHHHHTCCEEEECCSSC-----CS-HHHHHHHHHHHHHSTTCEEEE-EEECSHHHHHHHH-HHTCSEEEECSS
T ss_pred HHHHHHHHHHhhccceEeeeccCc-----cc-hhhHHHHHHHHHHCCCCceee-cccccHHHHHHHH-HhCCCEEeeccc
Confidence 455667788899999999943211 11 01236677787766 777775 9999999999998 799999998865
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.27 E-value=0.42 Score=42.01 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=79.7
Q ss_pred eccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc-----c
Q psy7343 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ-----D 283 (487)
Q Consensus 210 i~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~-----d 283 (487)
+.+.+++.+.++|+.+++. ..+|.+| .++ .++.+++.++.|+........ .
T Consensus 27 ~~~~~~~~v~~~A~a~~~~Ga~~i~~~-------------------~~~----~~~~ir~~~~~~~~~~~~~~~~~~~~~ 83 (230)
T d1yxya1 27 LYSETGGIMPLMAKAAQEAGAVGIRAN-------------------SVR----DIKEIQAITDLPIIGIIKKDYPPQEPF 83 (230)
T ss_dssp TCCTTCCSHHHHHHHHHHHTCSEEEEE-------------------SHH----HHHHHHTTCCSCEEEECBCCCTTSCCC
T ss_pred ccCCChHHHHHHHHHHHHCCCeEEEec-------------------Chh----hHHHHHhhhhcchhhhhcccCCcceee
Confidence 3455666777777777665 2222221 222 244577788888877654321 1
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.....+........|+|.+.+....... ......++.+++++......++. +++.|.++++... +.|+|.+.++-
T Consensus 84 ~~~~~~~~~~~~~~gad~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~-~~v~t~~~a~~a~-~~Gad~i~~~~ 158 (230)
T d1yxya1 84 ITATMTEVDQLAALNIAVIAMDCTKRDR---HDGLDIASFIRQVKEKYPNQLLM-ADISTFDEGLVAH-QAGIDFVGTTL 158 (230)
T ss_dssp BSCSHHHHHHHHTTTCSEEEEECCSSCC---TTCCCHHHHHHHHHHHCTTCEEE-EECSSHHHHHHHH-HTTCSEEECTT
T ss_pred echhHHHHHHHHhcCCCEEEEecccccc---cchhhHHHHHHHHHhcCCCceEe-cCCCCHHHHHHHH-hcCCCEEEeec
Confidence 2344566677778899999885432211 11233468888888877655555 4899999999988 78999998753
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=93.05 E-value=0.66 Score=40.29 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=34.7
Q ss_pred HHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 260 TNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 260 ~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
.+.+..+++.+++||++.+ .+.+..++.++++ +|+|+|+| |+
T Consensus 164 ~~~i~~~~~~~~iPVia~G----GI~t~~d~~~~~~-~GAdgV~i-Gs 205 (222)
T d1y0ea_ 164 FQFLKDVLQSVDAKVIAEG----NVITPDMYKRVMD-LGVHCSVV-GG 205 (222)
T ss_dssp HHHHHHHHHHCCSEEEEES----SCCSHHHHHHHHH-TTCSEEEE-CH
T ss_pred HHHHHHHHhcCCCcEEEeC----CCCCHHHHHHHHH-cCCCEEEE-ch
Confidence 4556667778899999997 7778888888885 89999999 76
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=93.00 E-value=0.14 Score=45.31 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=59.9
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l 351 (487)
|++.-+|.. +.++...+++.+.+.|+..+-|.-|+ +..++.++++++.. .--+++.|-|.|.+++++++
T Consensus 10 ~iipvlr~~-~~~~a~~~~~al~~~Gi~~iEitlr~---------p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~ 79 (202)
T d1wa3a1 10 KIVAVLRAN-SVEEAKEKALAVFEGGVHLIEITFTV---------PDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAV 79 (202)
T ss_dssp CEEEEECCS-SHHHHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHH
T ss_pred CEEEEEECC-CHHHHHHHHHHHHHcCCCEEEEecCC---------ccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHH
Confidence 455555544 67788999999999999999995453 23357888876543 44578999999999999999
Q ss_pred HhcCCcEEE
Q psy7343 352 AQTGVAGVM 360 (487)
Q Consensus 352 ~~~Gad~Vm 360 (487)
+.||+.++
T Consensus 80 -~aGa~fiv 87 (202)
T d1wa3a1 80 -ESGAEFIV 87 (202)
T ss_dssp -HHTCSEEE
T ss_pred -hhcccEEe
Confidence 79999886
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=92.88 E-value=0.21 Score=45.66 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=62.9
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..+.++..++.|+++|.|.. ++ .++.| +++.+..+++.+++||..---|.++-++.+.. ..|||+|.+--+
T Consensus 65 ~dp~~~A~~y~~~GA~aiSVLT---e~-~~F~G--s~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~-~~GADaVLLIaa 137 (254)
T d1vc4a_ 65 VDPVEAALAYARGGARAVSVLT---EP-HRFGG--SLLDLKRVREAVDLPLLRKDFVVDPFMLEEAR-AFGASAALLIVA 137 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEC---CC-SSSCC--CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHH-HTTCSEEEEEHH
T ss_pred CCHHHHHHHHHhcCCceEEEEc---Cc-ccccc--cHHHHHHHHHHcCCCcccCCccccHHHHHHHH-hccchHHHHHHH
Confidence 4778999999999999999942 11 12444 67889999999999999999999999999988 799999998866
Q ss_pred ccc
Q psy7343 365 NLY 367 (487)
Q Consensus 365 ~l~ 367 (487)
++.
T Consensus 138 ll~ 140 (254)
T d1vc4a_ 138 LLG 140 (254)
T ss_dssp HHG
T ss_pred HHH
Confidence 554
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=92.81 E-value=0.87 Score=42.49 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=62.1
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC----CCCCCCCCCHHHHHHHHhhCCCcEEE--cCCCCCH
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ----RGMNTGLASWEHITAVRKALTIPVIA--NGNIQCL 344 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~----~g~~~g~~~~~~i~~i~~~~~iPVi~--nGgI~s~ 344 (487)
.....++. ..........+..++.|.+++.+|--.... .+.......|+.++++++..+.|++. .|.+.+.
T Consensus 96 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~ 172 (329)
T d1p0ka_ 96 NGLIFANL---GSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSK 172 (329)
T ss_dssp SSCEEEEE---ETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCH
T ss_pred cceEEEee---ccchhHHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHcCCCcEEEecCCcchH
Confidence 34555554 233456677788889999999986543221 11111223468999999999888886 7899999
Q ss_pred HHHHHHHHhcCCcEEEec
Q psy7343 345 ADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiG 362 (487)
+++.++. +.|+|++.++
T Consensus 173 ~~a~~~~-~~GaD~i~v~ 189 (329)
T d1p0ka_ 173 ASAGKLY-EAGAAAVDIG 189 (329)
T ss_dssp HHHHHHH-HHTCSEEEEE
T ss_pred HHHHHHH-hcCCCEEEEc
Confidence 9999998 6899999984
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.76 E-value=0.69 Score=42.22 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=80.0
Q ss_pred CchHHHHHHHHhCCccceec----ccc----------chhhhcChhHHHHHHhcCCCCCCeeeeec-c---CCHHHHHH-
Q psy7343 160 SELPWRLLSRRYGSHLCYTP----MVS----------AHQFIADKKLRQEILMSTPEDRPLIIQFC-G---NDSKNLTE- 220 (487)
Q Consensus 160 td~~fr~i~~~~Ga~l~~t~----~v~----------~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g---~d~~~~~~- 220 (487)
-|.++..++.+.|+|++-.. |+. -+.+++. .+.++....+.-+++-+- + .++++..+
T Consensus 25 YD~~~A~~~~~agiDiiLVGDSlgmv~~G~~~T~~Vt~d~m~~H----~~aV~rga~~~~iv~DmPf~s~~~s~~~a~~n 100 (262)
T d1oy0a_ 25 YDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPL----VRGVVRGAPHALVVADLPFGSYEAGPTAALAA 100 (262)
T ss_dssp CSHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHH----HHHHHHHCTTSEEEEECCTTSSTTCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCchhhhhcCCCCcceeeHHHHHHH----HHHHHhccccceeEecchhhhcccchHHHHHH
Confidence 46778888889998875432 111 1111111 122222222333444442 2 34555544
Q ss_pred HHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc----------------
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD---------------- 283 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d---------------- 283 (487)
+.+.+.+. +|+|-+. |. . ...+.+. .+.+. +|||..-+.+.+.
T Consensus 101 A~r~~~~~ga~avkle----------g~--~---~~~~~I~----~L~~~-gIPV~gHiGLtPQ~~~~~Gg~r~~Gk~~~ 160 (262)
T d1oy0a_ 101 ATRFLKDGGAHAVKLE----------GG--E---RVAEQIA----CLTAA-GIPVMAHIGFTPQSVNTLGGFRVQGRGDA 160 (262)
T ss_dssp HHHHHHTTCCSEEEEE----------BS--G---GGHHHHH----HHHHH-TCCEEEEEECCC--------------CHH
T ss_pred HHHHHhccccceeeec----------hh--h---hhHHHHH----HHHhc-CCceEEeeeecceeeeecCccceeccchh
Confidence 55677665 4443332 21 0 1234444 44433 8999987655321
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
.....+-++.++++||.+|.+-. ...+..++|.+.++||+|+-|
T Consensus 161 ~~~l~~da~~le~AGa~~ivlE~------------Vp~~la~~It~~~~IPtIGIG 204 (262)
T d1oy0a_ 161 AEQTIADAIAVAEAGAFAVVMEM------------VPAELATQITGKLTIPTVGIG 204 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEES------------CCHHHHHHHHHHCSSCEEEES
T ss_pred hhHhHHHHHHHHhCCcEEEeccc------------ccHhHHHHHHhhCCceEEEec
Confidence 12334457889999999998821 235778899999999999866
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.68 E-value=0.17 Score=46.92 Aligned_cols=111 Identities=10% Similarity=-0.011 Sum_probs=69.5
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARM 293 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~ 293 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-+.+.-.++++.+.+.. .++++-+ .+.+..+..+.++.
T Consensus 18 D~~~~~~~i~~l~~~--------Gv-~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~~-~~~i~gv-~~~st~~~i~~a~~ 86 (293)
T d1w3ia_ 18 DKEKLKIHAENLIRK--------GI-DKLFVNGTTGLGPSLSPEEKLENLKAVYDVT-NKIIFQV-GGLNLDDAIRLAKL 86 (293)
T ss_dssp CHHHHHHHHHHHHHT--------TC-CEEEESSTTTTGGGSCHHHHHHHHHHHHTTC-SCEEEEC-CCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECeechhhhhCCHHHHHHHHHHHHhhc-ccccccc-ccchhhhhhhhhhh
Confidence 677777777766554 44 3455556566655445666677777776653 4555533 12245578888999
Q ss_pred HHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE
Q psy7343 294 LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337 (487)
Q Consensus 294 le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~ 337 (487)
.++.|+|++++..-..... .+...-.+++++|.+..++||+.
T Consensus 87 a~~~Ga~~~~~~~P~~~~~--~~~~~i~~~f~~Ia~a~~~pi~l 128 (293)
T d1w3ia_ 87 SKDFDIVGIASYAPYYYPR--MSEKHLVKYFKTLCEVSPHPVYL 128 (293)
T ss_dssp GGGSCCSEEEEECCCSCSS--CCHHHHHHHHHHHHHHCSSCEEE
T ss_pred hhhhccccccccccchhcc--chHHHHHHHHHHHHHhhccceee
Confidence 9999999999854321110 11111347788888888999874
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=92.62 E-value=0.16 Score=47.04 Aligned_cols=126 Identities=9% Similarity=0.046 Sum_probs=74.2
Q ss_pred CHHHHHHHHHh-hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~-~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
|.+.+.+..+. +++. || ..+...|.+|....-..+.-.++++.+.+.. ++||++.+- +.+..+..++
T Consensus 22 D~~~l~~~i~~li~~~--------Gv-~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~s~~~~iel 91 (293)
T d1f74a_ 22 NEKGLRQIIRHNIDKM--------KV-DGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG-SVNLKEAVEL 91 (293)
T ss_dssp CHHHHHHHHHHHHHTS--------CC-SEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC-CSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--------CC-CEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccc-cccHHHHHHH
Confidence 66777777764 4453 44 2344445556554334555566666655554 578888651 2245678899
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
++.+++.|+|+|++...... . .+.....+.++.+.+..++|++. | |--.+.+.+.++.+
T Consensus 92 a~~a~~~Gad~i~~~pP~~~-~--~s~~~~~~~~~~v~~~~~~pi~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T d1f74a_ 92 GKYATELGYDCLSAVTPFYY-K--FSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYK 156 (293)
T ss_dssp HHHHHHHTCSEEECCCCCSS-C--CCHHHHHHHHHHHHHHHCCCEEEECCSSCSCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCEeeccCcccc-c--cchHHHHHHHhcccccCCceEEEEeeccceeccccchhhhhhhh
Confidence 99999999999998433211 0 11111246677777778899874 2 21134555566553
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=92.58 E-value=0.54 Score=43.50 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---C
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---L 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~ 331 (487)
..+.+..++..+.+..++||.+.. |-....+.++...++|.+.||+.|-. +.-.-+....+++.+. .
T Consensus 57 ~~~~~~~~~~~~a~~~~vpV~lHl----DH~~~~e~i~~ai~~GftSVMiD~S~------lp~eeNi~~t~~vv~~ah~~ 126 (284)
T d1gvfa_ 57 ALEEIYALCSAYSTTYNMPLALHL----DHHESLDDIRRKVHAGVRSAMIDGSH------FPFAENVKLVKSVVDFCHSQ 126 (284)
T ss_dssp CHHHHHHHHHHHHHHTTSCBEEEE----EEECCHHHHHHHHHTTCCEEEECCTT------SCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCeEEeee----ccccchHHHHHHHhcCCCeEEEECCC------CCHHHHHHHHHHHHHHHHhh
Confidence 356777788888888899999998 55556777778889999999994321 1111123334444332 3
Q ss_pred CCcEEEc----C-------------CCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 332 TIPVIAN----G-------------NIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 332 ~iPVi~n----G-------------gI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+++|-+- | ..++++++.++.+++|+|...++=|-
T Consensus 127 gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt 177 (284)
T d1gvfa_ 127 DCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGT 177 (284)
T ss_dssp TCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSC
T ss_pred ccceeeeeeeeccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCc
Confidence 4544321 1 24799999999999999998876543
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=92.32 E-value=0.29 Score=45.99 Aligned_cols=146 Identities=12% Similarity=0.152 Sum_probs=88.3
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEE--eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcE
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV 274 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~Id--iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV 274 (487)
.++|++..+. |-+++++++++..+... .|.|- =++..|.. +.+.++-+.+.+.+++..+.++...
T Consensus 17 ~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~la~~~~--------~p~~eRv~~~~~a~~~a~~~TG~~~ 88 (307)
T d1geha1 17 KDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWY--------NRFEERAEIMAKIIDKVENETGEKK 88 (307)
T ss_dssp CSSCEEEECCSSCSSCCHHHHHHHHHHHHHTTCCEEECCTTCCCCTT--------SCHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred CCCceEEeeeCCcCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCCC--------CcHHHHHHHHHHHHHHHHHHhCCee
Confidence 4689887754 67899999988766554 44441 11121111 1122334555566666666666665
Q ss_pred EEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc----C--------CCC
Q psy7343 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN----G--------NIQ 342 (487)
Q Consensus 275 ~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n----G--------gI~ 342 (487)
..-.-+..+..+..+-++.+.+.|++++||..- ..|..-+..+++..+..++||.+- | ||
T Consensus 89 lYa~NiT~~~~em~~ra~~a~~~G~~~vmi~~~-------~~G~~al~~lr~~~~~~~lpIh~H~A~~ga~~~~~~~Gi- 160 (307)
T d1geha1 89 TWFANITADLLEMEQRLEVLADLGLKHAMVDVV-------ITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGI- 160 (307)
T ss_dssp EEECBCCSSHHHHHHHHHHHHHHTCCEEEEEHH-------HHCHHHHHHHHHHHHHTTCEEEEECTTGGGTSSCTTSEE-
T ss_pred EEEEEccCChHHHHHHHHHHHHcCCCEEEEecc-------ccchHHHHHHHHhhccCCeEEEeccccceeeecCccCCc-
Confidence 554444556678888889999999999999321 112112233444444678898862 2 33
Q ss_pred CHHHHHHHHHhcCCcEEEecc
Q psy7343 343 CLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiGR 363 (487)
|..-..+++...|+|.+.++.
T Consensus 161 s~~vl~kl~Rl~GaD~ih~~~ 181 (307)
T d1geha1 161 SMFVLAKLYRLIGIDQLHVGT 181 (307)
T ss_dssp CHHHHHHHHHHHTCSEEECCC
T ss_pred cHHHHHHHHHHhCcCceeccc
Confidence 234456777678999999875
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.32 E-value=0.15 Score=43.92 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=56.6
Q ss_pred HHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH-HHHHHHHhhC-CCcE
Q psy7343 260 TNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW-EHITAVRKAL-TIPV 335 (487)
Q Consensus 260 ~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~-~~i~~i~~~~-~iPV 335 (487)
.+.++.+++..+ .+|.+-. ++..+ +..+.++|+|.|++..-+ +.+. +.++.++..- ++.+
T Consensus 65 ~~~~~~~~~~~~~~~~I~VEv------~~~~e-~~~a~~~g~d~i~LDn~~---------pe~~k~~~~~lk~~~~~i~l 128 (170)
T d1o4ua1 65 ERAVQEVRKIIPFTTKIEVEV------ENLED-ALRAVEAGADIVMLDNLS---------PEEVKDISRRIKDINPNVIV 128 (170)
T ss_dssp HHHHHHHHTTSCTTSCEEEEE------SSHHH-HHHHHHTTCSEEEEESCC---------HHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHhhCCCCceEEEEe------CcHHH-HHHHHhcCccEEEEcCcC---------hhhHhHHHHHHHhhCCcEEE
Confidence 455566665442 4566654 34444 445567899999993211 1111 2233343332 6778
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.++|||+ .+.+.++. .+|+|.+.+|.-...-|+
T Consensus 129 EaSGGI~-~~ni~~~a-~~GVD~Is~g~lt~~a~~ 161 (170)
T d1o4ua1 129 EVSGGIT-EENVSLYD-FETVDVISSSRLTLQEVF 161 (170)
T ss_dssp EEEECCC-TTTGGGGC-CTTCCEEEEGGGTSSCCC
T ss_pred EEECCCC-HHHHHHHH-HcCCCEEEcCccccCCCC
Confidence 8999995 67777776 799999999965444444
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=92.19 E-value=0.4 Score=44.92 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHhhC-C-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHH
Q psy7343 213 NDSKNLTEAAKLAE-P-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 213 ~d~~~~~~aa~~~~-~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e 289 (487)
.+++.+++.|+.+. + .|..+.|..|. .+++.-.+.++++++++ ++.+.+-.--+++..+..+
T Consensus 46 ~~p~~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avr~~~pd~~l~vDaN~~~s~~~Ai~ 110 (309)
T d1jdfa1 46 MTPDAVVRLAEAAYEKYGFNDFKLKGGV---------------LAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIK 110 (309)
T ss_dssp CSHHHHHHHHHHHHHHHCCSCEEEECSS---------------SCHHHHHHHHHHHHHHCTTSCEEEECTTBBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEECCC---------------CCHHHHHHHHHHHHHHCCCCeEEeeccCCCCHHHHHH
Confidence 36788877776543 3 35544443321 23444556677777776 3344443322456666777
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+++.++ .++.++-= . ..........+..+++++.+++||.++-.+.+..++.++++...+|.++
T Consensus 111 ~~~~le-~~l~w~EE-P-----v~~~d~~~~~~~l~~lr~~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~ 174 (309)
T d1jdfa1 111 IGKYLK-GSLAYAED-P-----CGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPL 174 (309)
T ss_dssp HHHHTT-TTCSCEES-C-----BCCBTTBCHHHHHHHHHHHHCCCEEESSSSSSHHHHHHHHHHTCCSEEB
T ss_pred HHHHHh-hcchhhhh-h-----cccCcchhhHHHHHHhhcccccceecCcccchhhhhhhhhhhccceeee
Confidence 777664 45555421 0 0001112235778899999999999999999999999999766677543
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=92.12 E-value=0.35 Score=44.99 Aligned_cols=108 Identities=13% Similarity=0.209 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccc--cccHHHHHHHHHHcCCcEEEEEccccCCC-CCCCCCC---CHHHHHHHH
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQR-GMNTGLA---SWEHITAVR 328 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~~---~~~~i~~i~ 328 (487)
.++...+.++.|.+.+++||++-+-.|.. ..+....++.++++|+.+|.|--.+...+ +.+.+.. .-+.+.+++
T Consensus 61 ~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~ 140 (289)
T d1muma_ 61 TLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIR 140 (289)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHH
Confidence 57777788888888999999998866532 34778889999999999999955432221 2222322 125666665
Q ss_pred hhC------CCcEEEcCCCCCHHHHHHHH------HhcCCcEEEec
Q psy7343 329 KAL------TIPVIANGNIQCLADVEACL------AQTGVAGVMTA 362 (487)
Q Consensus 329 ~~~------~iPVi~nGgI~s~~da~~~l------~~~Gad~VmiG 362 (487)
... ++-|++-=|-.....+.+.+ .+.|||+|.+-
T Consensus 141 aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~ 186 (289)
T d1muma_ 141 AAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPE 186 (289)
T ss_dssp HHHHTCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEET
T ss_pred HHHHhcCCcchhheeccccccccCHHHHHHHHHHhhhcCCcEEEec
Confidence 432 34455544433222222222 25899999864
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=92.08 E-value=1.4 Score=39.67 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=87.0
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeeccc-
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQ- 282 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~- 282 (487)
+.|-+.+.+.+++.+.++.+... +|.||+=+.. . .+ ..+.+.+.++++.+++.. ++|+++..|...
T Consensus 18 Icv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~-l----~~------~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~e 86 (252)
T d1gqna_ 18 IIVSLMGRDINSVKAEALAYREATFDILEWRVDH-F----MD------IASTQSVLTAARVIRDAMPDIPLLFTFRSAKE 86 (252)
T ss_dssp EEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGG-C----SC------TTCHHHHHHHHHHHHHHCTTSCEEEECCBGGG
T ss_pred EEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEcc-c----cc------cCCHHHHHHHHHHHHHhcCCCCEEEEEechhh
Confidence 55668888888887766666554 8888887654 1 01 135678888888888876 599999999832
Q ss_pred ------ccccHHHHHHHHHHcC-CcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC----CCCCHHHHHHHH
Q psy7343 283 ------DVNKTVEYARMLERAG-CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG----NIQCLADVEACL 351 (487)
Q Consensus 283 ------d~~~~~e~a~~le~~G-~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG----gI~s~~da~~~l 351 (487)
+.++..++.+.+.+.| +|+|.|--.. .......+.+..+..++.||++- +--+.+++.+.+
T Consensus 87 GG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~--------~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~ 158 (252)
T d1gqna_ 87 GGEQTITTQHYLTLNRAAIDSGLVDMIDLELFT--------GDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRL 158 (252)
T ss_dssp TCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGG--------CHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCceEeccccc--------cHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHH
Confidence 2335666777777788 8999993211 00111112222334577888752 233445665554
Q ss_pred H---hcCCcEEEecc
Q psy7343 352 A---QTGVAGVMTAE 363 (487)
Q Consensus 352 ~---~~Gad~VmiGR 363 (487)
+ ..|||.|=++.
T Consensus 159 ~~m~~~gaDivKia~ 173 (252)
T d1gqna_ 159 RKMQALGADIPKIAV 173 (252)
T ss_dssp HHHHHTTCSEEEEEE
T ss_pred HHHHHhCCCeEEEEe
Confidence 3 46888775543
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=91.87 E-value=0.97 Score=41.18 Aligned_cols=66 Identities=32% Similarity=0.406 Sum_probs=47.5
Q ss_pred HHHHHHhhhccCcEEEEeeccc--------------c---cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHH
Q psy7343 261 NLVSSLRQAVQVPVSCKIRIYQ--------------D---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323 (487)
Q Consensus 261 eiv~~v~~~~~iPV~vKiR~~~--------------d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~ 323 (487)
++++.+.+. +|||..-+.+.+ + .....+.++.+|++||.+|.+-+ ..-+.
T Consensus 119 ~~I~~L~~~-gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ea~~l~~~a~~le~AGaf~ivlE~------------vp~~v 185 (262)
T d1m3ua_ 119 ETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLEC------------VPVEL 185 (262)
T ss_dssp HHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEEES------------CCHHH
T ss_pred HHHHHHHHc-CCeEEeehhhchhhhhhcCCccccCccHHHHHHHHHHHHHHHhhcceEEEEec------------ccHHH
Confidence 344445443 899999776532 1 12466778999999999999822 23467
Q ss_pred HHHHHhhCCCcEEEcC
Q psy7343 324 ITAVRKALTIPVIANG 339 (487)
Q Consensus 324 i~~i~~~~~iPVi~nG 339 (487)
.++|.+.++||+|+-|
T Consensus 186 a~~It~~~~IPtIGIG 201 (262)
T d1m3ua_ 186 AKRITEALAIPVIGIG 201 (262)
T ss_dssp HHHHHHHCSSCEEEES
T ss_pred HHHHHhhhcceeEeec
Confidence 8889999999999866
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=91.85 E-value=0.15 Score=47.28 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=55.1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+.|-+.+.. .++-.-..+.++.+.+.. ++||++.-+-.+.+++.++ .++.|||
T Consensus 22 D~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~-~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad 100 (292)
T d1xkya1 22 DFAKTTKLVNYLIDNGTTAIVVGGTTGESP-TLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD 100 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECeEccchh-hCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCC
Confidence 455778888889999999999955443321 111111124455555544 6899876666666655544 3368999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++|+.-+.+..|
T Consensus 101 ~ilv~pP~~~~~ 112 (292)
T d1xkya1 101 AVMLVAPYYNKP 112 (292)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 999987665544
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.72 E-value=0.19 Score=47.97 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=60.8
Q ss_pred cCCCCCCeeeeecc--------CCHH-HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh
Q psy7343 199 STPEDRPLIIQFCG--------NDSK-NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~g--------~d~~-~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~ 269 (487)
....+.||.+++.. .+.+ ....+..+.+...|.+++..|+-........ .... .......+..+.+|+.
T Consensus 212 ~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~-~~~~-~~~~~~~~~~~~ik~~ 289 (340)
T d1djqa1 212 AVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAG-PSRF-YQQGHTIPWVKLVKQV 289 (340)
T ss_dssp HHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSC-CTTT-CCTTTTHHHHHHHHTT
T ss_pred HHhhhhhceeeccccccccCCCCchhhhHHHHHHHHhhccceeeeeeccccccccccc-cccc-CCccccHHHHHHHHHH
Confidence 34557788888641 1222 2333444555558999999886221111000 0111 1122223456678888
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
+++||++.+ ++.+..++.+.+++..+|.|.+ ||.
T Consensus 290 ~~~pVi~~G----~i~~~~~a~~~l~~G~aDlV~~-gR~ 323 (340)
T d1djqa1 290 SKKPVLGVG----RYTDPEKMIEIVTKGYADIIGC-ARP 323 (340)
T ss_dssp CSSCEEECS----CCCCHHHHHHHHHTTSCSBEEE-SHH
T ss_pred cCCeEEEEC----CCCCHHHHHHHHHCCCccchhh-HHH
Confidence 999999987 5556777777776655999999 884
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.59 E-value=0.3 Score=45.53 Aligned_cols=143 Identities=19% Similarity=0.207 Sum_probs=87.8
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEE--eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcE
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV 274 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~Id--iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV 274 (487)
.++|++..+. |-+++++.+++..+... .|.|- =++..|.. +-+.++.+.+.+.++...+.++-.+
T Consensus 17 ~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~l~~~~~--------~p~~eRv~~~~~a~~~a~~~tG~~~ 88 (291)
T d2d69a1 17 KDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPF--------NRFEERVRKLYRVRDRVEAETGETK 88 (291)
T ss_dssp CSSCEEEECCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSCBTT--------BCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCceEEeeeCCcCCCCHHHHHHHHHHHHccCCceecCCccCCCCCC--------CCHHHHHHHHHHHHHHHHHHhCCee
Confidence 4789877654 67899999988766555 44441 11111110 1122344555566666656666555
Q ss_pred EEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH---hhCCCcEEEc------------C
Q psy7343 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR---KALTIPVIAN------------G 339 (487)
Q Consensus 275 ~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~---~~~~iPVi~n------------G 339 (487)
..-.-+..+.++..+-++.+.+.|+.++||..- ..| |+.+..++ +...+||.+- .
T Consensus 89 ~Ya~Nit~~~~~m~~ra~~~~~~G~~~vmi~~~-------~~G---~~al~~l~~~~~~~~l~ih~Hra~~g~~~r~~~~ 158 (291)
T d2d69a1 89 EYLINITGPVNIMEKRAEMVANEGGQYVMIDIV-------VAG---WSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRH 158 (291)
T ss_dssp EEECBCCSSHHHHHHHHHHHHHHTCCEEEEEHH-------HHC---HHHHHHHHHHHHHHTCEEEEECTTTHHHHSCTTS
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEeccc-------ccc---hHHHHHHHHhhccccceeeecccccceeccCCCC
Confidence 554434556677888899999999999999321 112 44454444 4556787762 2
Q ss_pred CCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 340 NIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 340 gI~s~~da~~~l~~~Gad~VmiGR 363 (487)
|| +..-..++..-.|+|.+.++.
T Consensus 159 Gi-s~~v~~kL~RLaGaD~ih~~~ 181 (291)
T d2d69a1 159 GI-TMLALAKAARMIGVDQIHTGT 181 (291)
T ss_dssp EE-CHHHHHHHHHHHTCSEEECCC
T ss_pred cc-cHHHHHHHHHHcCCCeeecCC
Confidence 44 455566777678999999876
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=91.50 E-value=0.41 Score=45.99 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--C
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--T 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~ 332 (487)
+++...+.+...+.. ...+...+ ...+..+.++.+.++|+|.+.|.... ++.. .-.+.++.+++.. +
T Consensus 84 ~ie~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~L~~ag~d~i~IDvAh-----G~~~-~v~~~i~~ir~~~~~~ 152 (362)
T d1pvna1 84 SIESQAAMVHAVKNF-RYLVGAGI----NTRDFRERVPALVEAGADVLCIDSSD-----GFSE-WQKITIGWIREKYGDK 152 (362)
T ss_dssp CHHHHHHHHHHHHTC-CCCCEEEE----CSSSHHHHHHHHHHHTCSEEEECCSC-----CCBH-HHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHhhhhhhc-cccccccc----chhhhHHHHHHHhhcCceEEeechhc-----cchh-HHHHHHHHHHHhhccc
Confidence 455444444444332 22233333 34467778889999999999992211 0111 1236677775543 5
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+||++ |+|.|++.++.++ +.|+|+|-+|=|
T Consensus 153 ~~IiA-GNVaT~e~~~~L~-~aGaD~vkVGIG 182 (362)
T d1pvna1 153 VKVGA-GNIVDGEGFRYLA-DAGADFIKIGIG 182 (362)
T ss_dssp SCEEE-EEECSHHHHHHHH-HHTCSEEEECSS
T ss_pred eeeec-ccccCHHHHHHHH-HhCCcEEEeccc
Confidence 77776 8999999999998 789999998854
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=91.35 E-value=3.3 Score=35.60 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=96.1
Q ss_pred ccCCCchHHHHHHHHhCCccceecccc--chhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCcCcEE
Q psy7343 156 MVDASELPWRLLSRRYGSHLCYTPMVS--AHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGI 232 (487)
Q Consensus 156 ma~~td~~fr~i~~~~Ga~l~~t~~v~--~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~I 232 (487)
..|+|+..--..+.++|++.+. ++. .+.=.-+++...++....+.. ...|=++ ..+.+...+.++.+. .|.|
T Consensus 5 ICGit~~ed~~~~~~~gad~iG--fif~~~SpR~vs~~~a~~i~~~~~~~-~~~V~Vf~~~~~~~i~~~~~~~~--~d~v 79 (200)
T d1v5xa_ 5 ICGITRLEDALLAEALGAFALG--FVLAPGSRRRIAPEAARAIGEALGPF-VVRVGVFRDQPPEEVLRLMEEAR--LQVA 79 (200)
T ss_dssp ECCCCCHHHHHHHHHHTCSEEE--EECCTTCTTBCCHHHHHHHHHHSCSS-SEEEEEESSCCHHHHHHHHHHTT--CSEE
T ss_pred EcCCCcHHHHHHHHhCCCCEEE--EEcCCCCCCCcCHHHHHHHHHhhcCc-eeeeeeeeechhhhhhhhhcccc--cccc
Confidence 3567776666778888987643 222 111111344555666544332 2233334 345555555444332 4455
Q ss_pred EeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC
Q psy7343 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312 (487)
Q Consensus 233 diN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~ 312 (487)
++| |. .+++.+. .+++ .+|++..+++..+.. . + ..+..++.+.+.......
T Consensus 80 QlH----------g~------e~~~~~~----~l~~--~~~iik~~~~~~~~~-~-~----~~~~~~~~~L~D~~~~g~- 130 (200)
T d1v5xa_ 80 QLH----------GE------EPPEWAE----AVGR--FYPVIKAFPLEGPAR-P-E----WADYPAQALLLDGKRPGS- 130 (200)
T ss_dssp EEC----------SC------CCHHHHH----HHTT--TSCEEEEEECSSSCC-G-G----GGGSSCSEEEEECSSTTS-
T ss_pred ccc----------cc------CCHHHHH----HHhh--ccccceeeccCchhh-H-H----HhhcchhheeecccccCc-
Confidence 554 42 3455433 3433 356766665543221 1 1 234578999886542221
Q ss_pred CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 313 GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 313 g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.+.-+|++...+.. ...|++.+|||. ++.+.+++ ..+..+|=+.+|.=..|-.
T Consensus 131 ---g~~~~~~~~~~~~~-~~~~~~LAGGl~-~~Nv~~~~-~~~p~gvDvsSGvE~~~G~ 183 (200)
T d1v5xa_ 131 ---GEAYPRAWAKPLLA-TGRRVILAGGIA-PENLEEVL-ALRPYALDLASGVEEAPGV 183 (200)
T ss_dssp ---CCCCCGGGGHHHHH-TTSCEEECSSCC-STTHHHHH-HHCCSEEEESGGGEEETTE
T ss_pred ---ccccchHHHhhhhh-ccCceEecCCCC-HHHHHHHH-hcCCCEEEEcCceECCCCc
Confidence 12234444333322 357999999997 56688888 4789999999998655553
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=91.26 E-value=0.84 Score=42.22 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=69.2
Q ss_pred hhcChhHHHHHHh--cCCCCCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCC-------cc--eee--ccCccc
Q psy7343 186 FIADKKLRQEILM--STPEDRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCP-------QM--VAK--RGHYGA 250 (487)
Q Consensus 186 Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP-------~~--i~~--~gr~G~ 250 (487)
+..+++...++++ ....+.|+.+|+.. .+..++..+++.+.+. .+++...-... .. ... ...+|+
T Consensus 139 ~~~~~~~~~~~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 218 (311)
T d1juba_ 139 LAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGG 218 (311)
T ss_dssp GGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEE
T ss_pred ccccHHHHHHHHHHhhcccccceeecccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCC
Confidence 3456666666665 34457899999985 3555677778877665 67766432211 00 000 111121
Q ss_pred c-ccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 251 Y-LQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 251 ~-l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
. ...=.....+.+..+++.+ ++||++.+ .+.+..|+.+.+ .+|||.|.+
T Consensus 219 ~sg~~l~~~al~~i~~i~~~~~~~~~Iig~G----GI~s~~Da~~~i-~aGA~~Vql 270 (311)
T d1juba_ 219 IGGAYIKPTALANVRAFYTRLKPEIQIIGTG----GIETGQDAFEHL-LCGATMLQI 270 (311)
T ss_dssp EESGGGHHHHHHHHHHHHTTSCTTSEEEEES----SCCSHHHHHHHH-HHTCSEEEE
T ss_pred ccccccCchHHHHHHHHHHhcCCCeeEEecC----CcCCHHHHHHHH-HcCCCceee
Confidence 1 1111123345566676665 48999997 888999998887 689999999
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=91.25 E-value=0.17 Score=46.88 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=54.9
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+-|-|.+.. .++-.-..+.++.+.+.. ++||++.-+=.|.+++.++. ++.|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~-~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad 98 (295)
T d1o5ka_ 20 DLESYERLVRYQLENGVNALIVLGTTGESP-TVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGAN 98 (295)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGG-GCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccchh-hCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCC
Confidence 555678888888899999999955544322 111111123344444443 68998876666676665553 357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++|+.-..+..|
T Consensus 99 ~v~v~pP~y~~~ 110 (295)
T d1o5ka_ 99 GVLVVTPYYNKP 110 (295)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEeCCCCCCC
Confidence 999987665544
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=91.09 E-value=0.79 Score=41.57 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeec--------ccccccHHHHHHHHHHcCCcE-EEEEccccCCC-CCCCCCCCHHHH
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRI--------YQDVNKTVEYARMLERAGCQL-LAVHGRTVDQR-GMNTGLASWEHI 324 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~--------~~d~~~~~e~a~~le~~G~d~-I~VhgRt~~~~-g~~~g~~~~~~i 324 (487)
..+.+.+.+++++...+--+.+.+.. +||.++..++.+.+++.+.+. +.| +|- .......+|+..
T Consensus 54 ~~~~~~~rI~~~r~~~G~~~~i~iD~~~~~~~~~~~~~~~ai~~l~~L~~~~~~~~l~I-----EqP~~~~~~~~d~~gl 128 (251)
T d1kkoa1 54 YVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYI-----EGPVDAGNKPDQIRML 128 (251)
T ss_dssp HHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEE-----ECCCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCCcceeeccccccccccCCCHHHHHHHHHHHHHhcCCCceee-----cCCcccccchHHHHHH
Confidence 34555556666666654444444332 345556677777777765543 333 111 000112357777
Q ss_pred HHHHhh-----CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 325 TAVRKA-----LTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 325 ~~i~~~-----~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+++++. .++||++.=.+.|.+|+.++++...||.|.+=
T Consensus 129 ~~l~~~l~~~g~~vpI~~DE~~~t~~d~~~~i~~~a~d~v~iK 171 (251)
T d1kkoa1 129 TAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIK 171 (251)
T ss_dssp HHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred HHHHHHHhccCCCceEeccceeCCHHHHHHHHHhCCccceecc
Confidence 777665 47999999899999999999977789999864
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.09 E-value=0.21 Score=46.33 Aligned_cols=86 Identities=26% Similarity=0.268 Sum_probs=54.6
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+-|-+.+.. .++-.-..+.++.+.+.+ ++||++.-+-.+.+++.++. ++.|+|
T Consensus 26 D~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~-~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad 104 (296)
T d1xxxa1 26 DTATAARLANHLVDQGCDGLVVSGTTGESP-TTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH 104 (296)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTTT-TSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccchh-hCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCC
Confidence 455678888889999999999944443321 111111123344444444 58888765556666665543 357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++|+..+.+..|
T Consensus 105 ~v~i~~P~~~~~ 116 (296)
T d1xxxa1 105 GLLVVTPYYSKP 116 (296)
T ss_dssp EEEEECCCSSCC
T ss_pred eEEEEeccCCCC
Confidence 999998877665
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=90.69 E-value=1.3 Score=39.97 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=71.1
Q ss_pred HHHHhhhccCcEEEEeec-cc------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcE
Q psy7343 263 VSSLRQAVQVPVSCKIRI-YQ------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPV 335 (487)
Q Consensus 263 v~~v~~~~~iPV~vKiR~-~~------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPV 335 (487)
.++++..-++.|++-+.- .+ ...+..++++..+ .|+++|.|.. ... ++.| +++.+..+++.+++||
T Consensus 32 ~~al~~~~~~~iIAEiKr~SPS~G~i~~~~d~~~~a~~ye-~GA~aiSVLT--d~~--~F~G--s~~~l~~vr~~~~~Pi 104 (251)
T d1i4na_ 32 LEVLSGKERVKIIAEFKKASPSAGDINADASLEDFIRMYD-ELADAISILT--EKH--YFKG--DPAFVRAARNLTCRPI 104 (251)
T ss_dssp HHHHCCSSSCEEEEEECSBCSSSCBSCTTCCHHHHHHHHH-HHCSEEEEEC--CCS--SSCC--CTHHHHHHHTTCCSCE
T ss_pred HHHHhcCCCCeEEEeeecCCCCCCCCcCCccHHHHHHHHh-cCCcceEEec--ccC--CCCC--CHHHHHHHhhcccCch
Confidence 344554445778874432 11 2247889998885 6999999842 222 2545 5788999999999999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+---=|-++-++.+.. ..|||+|.+=-+++.+
T Consensus 105 LrKDFIid~~QI~ea~-~~GADaiLLI~~~L~~ 136 (251)
T d1i4na_ 105 LAKDFYIDTVQVKLAS-SVGADAILIIARILTA 136 (251)
T ss_dssp EEECCCCSTHHHHHHH-HTTCSEEEEEGGGSCH
T ss_pred hhhhhhhCHHHHHHHH-hhccceEEeecccccH
Confidence 9999999999999988 7999999877666643
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=90.59 E-value=0.44 Score=44.25 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhccCcEEEEeec----ccccc----cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH---HHHHHH
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRI----YQDVN----KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW---EHITAV 327 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~----~~d~~----~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~---~~i~~i 327 (487)
+.++.+..+ ..++|+.+-+-. ..+.. .....++.+.+.|+|.+-+- =. +......| ..+.++
T Consensus 142 ~~~l~~~c~-~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~-~p-----~~~~~~~~~~~~~~~~~ 214 (291)
T d1to3a_ 142 VKEFNELCH-SNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVE-MP-----LYGKGARSDLLTASQRL 214 (291)
T ss_dssp HHHHHHHHH-TTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEEC-CG-----GGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEe-cC-----CCchhhhHHHHHHHHHH
Confidence 344444333 448998885432 11221 24666788889999988771 10 01111223 445566
Q ss_pred HhhCCCc-EEEcCCCCCHHHHHHHHH---hcCCcEEEeccccccCcc
Q psy7343 328 RKALTIP-VIANGNIQCLADVEACLA---QTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 328 ~~~~~iP-Vi~nGgI~s~~da~~~l~---~~Gad~VmiGRa~l~~P~ 370 (487)
.....+| |+.+||. +.+++.+.++ ..||.|+.+||.+..+|-
T Consensus 215 ~~~~~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~~~~ 260 (291)
T d1to3a_ 215 NGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSSVI 260 (291)
T ss_dssp HHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGGGT
T ss_pred hhcCCCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhhCcc
Confidence 6677999 5566776 4555555443 479999999999998863
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=90.50 E-value=0.67 Score=43.91 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=78.2
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCC-CCCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT-GLASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~-g~~~~~~i~~i 327 (487)
|+.+..+.+++.++- .++.||.+|=-...+.+++...++.+...|...|++.-|+......+. ...|+..+..+
T Consensus 184 ~A~~~~n~~LL~~~g-----~t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~lD~~~i~~~ 258 (338)
T d1vr6a1 184 GARNAQNFRLLSKAG-----SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPII 258 (338)
T ss_dssp CGGGTTCHHHHHHHH-----TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHH
T ss_pred chhhccCHHHHHHhh-----ccCCcEEecCccccchhhhhhhHHHHHhcCCccceeeeccccccccccccchhhccccee
Confidence 455566788776533 358999998644456678888889899999999998667643221122 23577888889
Q ss_pred HhhCCCcEEEc----CCCCCHH-H-HHHHHHhcCCcEEEeccccccCccc
Q psy7343 328 RKALTIPVIAN----GNIQCLA-D-VEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 328 ~~~~~iPVi~n----GgI~s~~-d-a~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++....|||+. ||-+..- . +...+ ..||||+++=. --||.-
T Consensus 259 k~~~~lPVi~DpsHs~G~r~~v~~larAAv-A~GadGl~iE~--Hp~P~~ 305 (338)
T d1vr6a1 259 RKESHLPILVDPSHSGGRRDLVIPLSRAAI-AVGAHGIIVEV--HPEPEK 305 (338)
T ss_dssp HHHBSSCEEECHHHHHCSGGGHHHHHHHHH-HHTCSEEEEEB--CSCGGG
T ss_pred eccccCceeeCCCCCCCchhHHHHHHHHHH-HhCCCEEEEEe--CCCccc
Confidence 98889999973 4444332 2 33444 57999999975 355654
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=90.32 E-value=0.62 Score=43.55 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=61.9
Q ss_pred HHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCCCcEEE
Q psy7343 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALTIPVIA 337 (487)
Q Consensus 261 eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~ 337 (487)
.++..+.+..++||.+.. |-....+.++...+.|.+.||+.|-. +.-..+.+..+++.+ ..+++|-+
T Consensus 62 ~~~~~~a~~~~vpv~lHl----DH~~~~e~i~~ai~~GftSVMiDgS~------l~~eeNi~~Tk~vv~~Ah~~gv~VEa 131 (305)
T d1rvga_ 62 LMAVELAKEARVPVAVHL----DHGSSYESVLRALRAGFTSVMIDKSH------EDFETNVRETRRVVEAAHAVGVTVEA 131 (305)
T ss_dssp HHHHHHHHHCSSCEEEEE----EEECSHHHHHHHHHTTCSEEEECCTT------SCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCcEEEee----hhccChhhhHHHHhcCCceEEEcCcc------ccHHHHHHHHHHHHHHhchhceeEEe
Confidence 344455556789999998 55555666777778999999994321 111123344444433 23555433
Q ss_pred ----cC-------------CCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 338 ----NG-------------NIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 338 ----nG-------------gI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.| -.++++++.++.+++|+|...++=|-..
T Consensus 132 ElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~H 178 (305)
T d1rvga_ 132 ELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSH 178 (305)
T ss_dssp EESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCS
T ss_pred eeeeeecccccccccccccccCCHHHHHHHHHHhCccHhhhhhhhhh
Confidence 11 1468999999999999998887755433
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.25 Score=45.70 Aligned_cols=86 Identities=15% Similarity=0.139 Sum_probs=56.6
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHH---hcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLA---QTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~---~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+.|-+.+.. .++-.-..+.++.+.+.. ++||++..+-.+.+++.++.+ +.|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~-~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad 98 (292)
T d2a6na1 20 CRASLKKLIDYHVASGTSAIVSVGTTGESA-TLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV 98 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGG-GSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccchh-hCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCc
Confidence 455677888888899999999955443321 111110123444445544 689998887888888777764 36999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++++..+.+..+
T Consensus 99 ~~~~~pP~~~~~ 110 (292)
T d2a6na1 99 GCLTVTPYYNRP 110 (292)
T ss_dssp EEEEECCCSSCC
T ss_pred ceeccCCCCCCC
Confidence 999987665543
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=88.78 E-value=0.73 Score=41.96 Aligned_cols=139 Identities=12% Similarity=0.059 Sum_probs=75.6
Q ss_pred Ceeeeec--cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec-c
Q psy7343 205 PLIIQFC--GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI-Y 281 (487)
Q Consensus 205 Pv~Vqi~--g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~-~ 281 (487)
.+++-|+ ..+++. +.++++...|.+-||+.+ .. ..++....+.++.+.+..+.+|.+-+.+ |
T Consensus 22 KIIaTiGPas~~~~~---l~~li~aGvdv~RiN~SH-g~-----------~e~~~~~i~~iR~~~~~~g~~v~i~~d~~g 86 (258)
T d1pkla2 22 RIICTIGPSTQSVEA---LKGLIQSGMSVARMNFSH-GS-----------HEYHQTTINNVRQAAAELGVNIAIALDTKG 86 (258)
T ss_dssp EEEEECCGGGCSHHH---HHHHHHHTEEEEEEETTS-SC-----------HHHHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred cEEEeeCCCcCCHHH---HHHHHHcCCCEEEEECCC-CC-----------HHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 4566665 233333 334555568889999887 11 0122333333444444567777665543 2
Q ss_pred ccccc--HHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh--CCCcEEEcCCCCCHHHHHHHHHh-cCC
Q psy7343 282 QDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--LTIPVIANGNIQCLADVEACLAQ-TGV 356 (487)
Q Consensus 282 ~d~~~--~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--~~iPVi~nGgI~s~~da~~~l~~-~Ga 356 (487)
+...+ -.+-.+...+.|+|+|.++ - .....|...++++.+. .++.||+ -|.+.+.+..+-+- .-+
T Consensus 87 p~~~t~kd~~di~~a~~~~vD~ialS-F-------Vrs~~Dv~~ir~~l~~~~~~~~iia--KIE~~~al~nldeI~~~s 156 (258)
T d1pkla2 87 PPAVSAKDRVDLQFGVEQGVDMIFAS-F-------IRSAEQVGDVRKALGPKGRDIMIIC--KIENHQGVQNIDSIIEES 156 (258)
T ss_dssp CCSSCHHHHHHHHHHHHHTCSEEEET-T-------CCSHHHHHHHHHHHCGGGTTSEEEE--EECSHHHHHTHHHHHHHS
T ss_pred cccccccHHHHHHHHHhcCCCeEEEe-C-------CCCHHHHHHHHHHHHHcCCCCceEE--EecCchhhhhhhhHHhhC
Confidence 22222 2222455667899999882 1 1111234444444332 2566777 78888766544211 348
Q ss_pred cEEEeccccccC
Q psy7343 357 AGVMTAEGNLYN 368 (487)
Q Consensus 357 d~VmiGRa~l~~ 368 (487)
|||||+||=|+-
T Consensus 157 DgImIaRGDLg~ 168 (258)
T d1pkla2 157 DGIMVARGDLGV 168 (258)
T ss_dssp SEEEECHHHHTT
T ss_pred CeeeEechhhhh
Confidence 999999997765
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=88.69 E-value=2.1 Score=38.42 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=74.1
Q ss_pred cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc-ccc-------ccHHHHHHHHHHcCC
Q psy7343 228 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY-QDV-------NKTVEYARMLERAGC 299 (487)
Q Consensus 228 ~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~-~d~-------~~~~e~a~~le~~G~ 299 (487)
..|-|||+-.- .. | .+......+.. +++.+++||.+=+|.- +|. +...+-++.+.+.|+
T Consensus 20 GAdRIELc~~l----~~-G----GlTPS~g~i~~----~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~ 86 (247)
T d1twda_ 20 GADRVELCAAP----KE-G----GLTPSLGVLKS----VRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGF 86 (247)
T ss_dssp TCSEEEECBCG----GG-T----CBCCCHHHHHH----HHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCc----cc-C----CCCCCHHHHHH----HHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 48889986221 11 1 12334555544 5556799999999973 222 234555677788999
Q ss_pred cEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcC---CCCCHHHHHHHHHhcCCcEEEec
Q psy7343 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANG---NIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 300 d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nG---gI~s~~da~~~l~~~Gad~VmiG 362 (487)
|+|.+ |--.. .|..|.+.++++.+.. +.|++..= -+.++.++.+.+.+.|++.|.-.
T Consensus 87 dGvV~-G~L~~-----dg~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTS 147 (247)
T d1twda_ 87 PGLVT-GVLDV-----DGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTS 147 (247)
T ss_dssp SEEEE-CCBCT-----TSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEEC
T ss_pred CeEEE-EEECC-----CCCccHHHHHHHHHHhcccCeeeehhhhhhCCHHHHHHHHHhcCCCeEecc
Confidence 99999 54322 3456888888887665 68887642 33466666555556799988744
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.14 E-value=3 Score=32.42 Aligned_cols=88 Identities=11% Similarity=0.084 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI 336 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi 336 (487)
..+.+.++.+-+..+.-|..- .+..++.+.+++...|.|.+.-. ..+..-++.++++++.-++|||
T Consensus 10 ~~~~~~l~~~L~~~g~~v~~a-------~~~~eal~~~~~~~~dlillD~~-------mp~~~G~~~~~~i~~~~~~pvI 75 (117)
T d2a9pa1 10 KPISDIIKFNMTKEGYEVVTA-------FNGREALEQFEAEQPDIIILDLM-------LPEIDGLEVAKTIRKTSSVPIL 75 (117)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE-------SSHHHHHHHHHHHCCSEEEECSS-------CSSSCHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHhcCCCEEEeccc-------cCCCCccHHHHHHHhCCCCCEE
Confidence 344445544444446555432 25677778888888999888211 2233347899999988899999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~V 359 (487)
.--+-.+.++..+.+ +.||+..
T Consensus 76 ~lt~~~~~~~~~~a~-~~Ga~d~ 97 (117)
T d2a9pa1 76 MLSAKDSEFDKVIGL-ELGADDY 97 (117)
T ss_dssp EEESCCSHHHHHHHH-HHTCSEE
T ss_pred EEecCCCHHHHHHHH-HcCCCEE
Confidence 877888889988888 6888864
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.04 E-value=3.2 Score=32.47 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI 336 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi 336 (487)
..+.+.+...-+..+.-|..- .+..+..+.+++...|.|.+.-. ..+..-++.++++++..++||+
T Consensus 12 ~~~~~~l~~~L~~~g~~v~~a-------~~~~~al~~l~~~~~dlii~D~~-------mp~~~G~~~~~~~r~~~~~pii 77 (121)
T d1xhfa1 12 LVTRNTLKSIFEAEGYDVFEA-------TDGAEMHQILSEYDINLVIMDIN-------LPGKNGLLLARELREQANVALM 77 (121)
T ss_dssp HHHHHHHHHHHHTTTCEEEEE-------SSHHHHHHHHHHSCCSEEEECSS-------CSSSCHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEE-------CChHHHHHHHHhcCCCEEEeecc-------cCCccCcHHHHHHHhcCCCcEE
Confidence 344444444444456544432 26677788888889998888222 2222337889999988899999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
.-.+-.+.++..+.+ +.||+...
T Consensus 78 ~lt~~~~~~~~~~a~-~~Ga~dyl 100 (121)
T d1xhfa1 78 FLTGRDNEVDKILGL-EIGADDYI 100 (121)
T ss_dssp EEESCCSHHHHHHHH-HHTCSEEE
T ss_pred EEECCCCHHHHHHHH-HcCCCEEE
Confidence 888888999999988 68888753
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=88.01 E-value=0.9 Score=41.70 Aligned_cols=107 Identities=14% Similarity=0.237 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEccccCCC-CCCCCC----CCH-HHHHHH
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRTVDQR-GMNTGL----ASW-EHITAV 327 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~----~~~-~~i~~i 327 (487)
.++.+.+.++.|.+.+++||++-+--|. +..+..+.++.++++|+.+|.|--.+...+ +.+.|. ... +.+.++
T Consensus 60 t~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki 139 (275)
T d1s2wa_ 60 SWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKI 139 (275)
T ss_dssp -CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHH
T ss_pred chhhHHHHHHhhhcccCCceeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHH
Confidence 4666777788888899999999887654 445777888999999999999955432211 112221 122 334444
Q ss_pred Hhh------CCCcEEEcCCCC----CHHHHHHH---HHhcCCcEEEe
Q psy7343 328 RKA------LTIPVIANGNIQ----CLADVEAC---LAQTGVAGVMT 361 (487)
Q Consensus 328 ~~~------~~iPVi~nGgI~----s~~da~~~---l~~~Gad~Vmi 361 (487)
+.. .++-|++--|-. ..+++.+- ..+.|||+|.+
T Consensus 140 ~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~ 186 (275)
T d1s2wa_ 140 KACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILM 186 (275)
T ss_dssp HHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HhhhhhccCcceeEEecchhhhhcCCHHHHHHHHHHHHhcCCCeeee
Confidence 332 244566644432 34554432 22589999997
|
| >d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=88.00 E-value=0.83 Score=43.01 Aligned_cols=143 Identities=12% Similarity=0.069 Sum_probs=84.2
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEEe--ecCCCcceeeccCccccccCChHHHHHHHHHHhhhccC--
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGIDI--NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV-- 272 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~Idi--N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i-- 272 (487)
.++|++..+. |-+++++++++..+... .|.|-= +++.|.. +-+.++.+.+.+.++...+.++-
T Consensus 15 ~~RPLlgtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~--------~p~~eRv~~~~~av~~a~~eTG~~k 86 (325)
T d1wdda1 15 YGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPF--------MRWRDRFVFCAEAIYKSQAETGEIK 86 (325)
T ss_dssp CSSCEEECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTT--------BCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCeEEeecCCCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCCC--------cchHHHHHHHHHHHHHHHHhhCCce
Confidence 4688876654 67899999988766554 444411 2221110 11123345555555555555543
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCCCcEEE------------
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALTIPVIA------------ 337 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~------------ 337 (487)
-..+|+ .+.+.++..+-++.+.+.|++.+|+.-- ..| |..+..+++ ..++|+.+
T Consensus 87 ~y~~ni-t~~~~~em~~ra~~a~e~G~~~~mi~~~-------~~G---~~a~~~l~~~~~~~~l~ih~Hra~~ga~tr~~ 155 (325)
T d1wdda1 87 GHYLNA-TAGTCEEMIKRAVFARELGVPIVMHDYL-------TGG---FTANTSLAHYCRDNGLLLHIHRAMHAVIDRQK 155 (325)
T ss_dssp EEEEEC-CCSSHHHHHHHHHHHHHHTCSEEEEEHH-------HHC---HHHHHHHHHHHHHHTCEEEEECTTHHHHHSCS
T ss_pred eEEecc-CCCCHHHHHHHHHHHHHcCCCEEEEecc-------ccc---HHHHHHHHHhhhhcCceeecccccccccccCC
Confidence 344565 1123456677778888999999998211 112 444444443 45788887
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+.|| +..-..++..-.|+|.+.++..
T Consensus 156 ~~Gi-s~~vl~kl~RLaGaD~ih~~~~ 181 (325)
T d1wdda1 156 NHGM-HFRVLAKALRMSGGDHIHAGTV 181 (325)
T ss_dssp SSEE-CHHHHHHHHHHHCCSEEECCCS
T ss_pred CCCc-cHHHHHHHHHHcCCCccccCcc
Confidence 4566 4455667776789999998764
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.80 E-value=6.5 Score=35.10 Aligned_cols=88 Identities=17% Similarity=0.292 Sum_probs=64.8
Q ss_pred cCcEEEEeec-cc---cc-ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHH
Q psy7343 271 QVPVSCKIRI-YQ---DV-NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLA 345 (487)
Q Consensus 271 ~iPV~vKiR~-~~---d~-~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~ 345 (487)
..+|++-+.- .+ .+ .+..++++ ..+.|+++|.|- |... ++.| +++.+..+++.+++||.---=|-++-
T Consensus 44 ~~~iIaEiKr~SPS~g~i~~d~~~~a~-~~~~gA~aiSVL--Td~~--~F~G--s~~dl~~v~~~~~~PiLrKDFIid~~ 116 (247)
T d1a53a_ 44 ITAIIAEYKRKSPSGLDVERDPIEYSK-FMERYAVGLSIL--TEEK--YFNG--SYETLRKIASSVSIPILMKDFIVKES 116 (247)
T ss_dssp CCCEEEEECSBCTTSCBCCCCHHHHHH-HHTTTCSEEEEE--CCCT--TTCC--CHHHHHHHHHHCCSCEEEESCCCSHH
T ss_pred CCeEEeeEecCCCCCCccccCHHHHHH-HHHhCCCeEEEe--cCcc--cccc--chHHHHHHHhccccceeecccccChH
Confidence 5667774422 11 12 35677776 456899999883 2222 2555 67899999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeccccc
Q psy7343 346 DVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa~l 366 (487)
++.+.. ..|||+|.+=-+++
T Consensus 117 QI~ea~-~~GADaiLLI~~~L 136 (247)
T d1a53a_ 117 QIDDAY-NLGADTVLLIVKIL 136 (247)
T ss_dssp HHHHHH-HHTCSEEEEEGGGS
T ss_pred HHHHHH-Hhhcchhhhhhhhc
Confidence 999998 78999998766655
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=87.71 E-value=0.77 Score=41.05 Aligned_cols=83 Identities=11% Similarity=0.107 Sum_probs=51.2
Q ss_pred eeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~ 285 (487)
++|-+...+.++..++++.+....+++.++ +|. +... .++.+.+ +++ .+.+++.-..+. |+-
T Consensus 6 ~IvALD~~~~~~al~i~~~~~~~i~~iKvG--~~l-~~~~---------G~~~i~~----l~~-~~~~IflD~K~~-DIg 67 (237)
T d1dbta_ 6 PIIALDFASAEETLAFLAPFQQEPLFVKVG--MEL-FYQE---------GPSIVKQ----LKE-RNCELFLDLKLH-DIP 67 (237)
T ss_dssp CEEECCCSSHHHHHHHTGGGTTSCCEEEEC--HHH-HHHH---------THHHHHH----HHH-TTCEEEEEEEEC-SCH
T ss_pred eEEEeccCCHHHHHHHHHHcCCcccEEEEC--HHH-Hhhc---------CHHHHHH----HHh-cchheehhhhhc-cCc
Confidence 356666667777777777777766777775 221 1111 1344444 444 357777754444 554
Q ss_pred -cHHHHHHHHHHcCCcEEEEEc
Q psy7343 286 -KTVEYARMLERAGCQLLAVHG 306 (487)
Q Consensus 286 -~~~e~a~~le~~G~d~I~Vhg 306 (487)
+....++.+.+.|+|.+++|+
T Consensus 68 nTv~~~~~~~~~~~~d~vtvh~ 89 (237)
T d1dbta_ 68 TTVNKAMKRLASLGVDLVNVHA 89 (237)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEG
T ss_pred hHHHHHHHhhhccccceEEeec
Confidence 445556667778999999997
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.65 E-value=0.88 Score=41.13 Aligned_cols=122 Identities=15% Similarity=0.123 Sum_probs=67.3
Q ss_pred HHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHH---HHhhhccCcEEEEeecc-cccc-cHHHHHHHHHH
Q psy7343 222 AKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS---SLRQAVQVPVSCKIRIY-QDVN-KTVEYARMLER 296 (487)
Q Consensus 222 a~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~---~v~~~~~iPV~vKiR~~-~d~~-~~~e~a~~le~ 296 (487)
.+++....|.+-||+.+ . +.+...+.++ .+.+..+.++.+-..+. +... .-.+..+...+
T Consensus 21 ~~li~aGvdv~RlN~SH-g--------------~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~i~~a~~ 85 (246)
T d1e0ta2 21 AKMLDAGMNVMRLNFSH-G--------------DYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQDLIFGCE 85 (246)
T ss_dssp HHHHHHTEEEEEEETTS-S--------------CHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEEECCC-C--------------CHHHHHHHHHHHHHHHHHcCCCCcccccccccccccCcchhhhHHHH
Confidence 34455568889999887 1 2333333333 34444567776655442 2221 12233455567
Q ss_pred cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CCCcEEEcCCCCCHHHHHHHHHh-cCCcEEEeccccccC
Q psy7343 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LTIPVIANGNIQCLADVEACLAQ-TGVAGVMTAEGNLYN 368 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~iPVi~nGgI~s~~da~~~l~~-~Gad~VmiGRa~l~~ 368 (487)
.|+|+|.++ - .....|...++++.+. .+++||+ -|.+.+.+..+-+- .-+|||||+||=|+-
T Consensus 86 ~~vD~ialS-F-------Vr~~~Dv~~~r~~l~~~~~~~~~iia--KIE~~~al~nldeIi~~sDgImIaRGDLg~ 151 (246)
T d1e0ta2 86 QGVDFVAAS-F-------IRKRSDVIEIREHLKAHGGENIHIIS--KIENQEGLNNFDEILEASDGIMVARGDLGV 151 (246)
T ss_dssp HTCSEEEES-S-------CCSHHHHHHHHHHHHTTTCTTCEEEE--EECSHHHHHTHHHHHHHSSEEEEEHHHHHH
T ss_pred cCCCEEEEc-C-------CCCHHHHHHHHHHHHHhCCCCceEEE--EecchhhhhchHHHHhhcceEEEEccchhh
Confidence 899999882 1 1111233344443332 2466777 78887765543211 248999999996654
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=0.42 Score=44.08 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=53.3
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+-|-+.+.. .++-.-..+.++.+.+.+ ++|+++.-+-.+.+++.++. ++.|+|
T Consensus 21 D~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~-~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad 99 (295)
T d1hl2a_ 21 DKASLRRLVQFNIQQGIDGLYVGGSTGEAF-VQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFD 99 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSGGGTGG-GSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeEccchh-hCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCc
Confidence 455678888888899999999954443321 111111123444454444 68988755555566655543 357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++|+.-..+..+
T Consensus 100 ~~~v~~p~~~~~ 111 (295)
T d1hl2a_ 100 AVSAVTPFYYPF 111 (295)
T ss_dssp EEEEECCCSSCC
T ss_pred eeeeeeccccCC
Confidence 999987665543
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.38 E-value=0.58 Score=42.85 Aligned_cols=134 Identities=17% Similarity=0.210 Sum_probs=72.8
Q ss_pred Ceeeeecc--CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh----ccCcEEEEe
Q psy7343 205 PLIIQFCG--NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA----VQVPVSCKI 278 (487)
Q Consensus 205 Pv~Vqi~g--~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~----~~iPV~vKi 278 (487)
.+++-|+- .+++. +.++++...+.+-||+.+ | +.+...++++.+|+. .+.||.+..
T Consensus 22 KIIaTiGPas~~~e~---l~~li~aG~dv~RlN~SH-------g--------~~~~h~~~i~~iR~~~e~~~G~~v~i~~ 83 (265)
T d1a3xa2 22 SIIGTIGPKTNNPET---LVALRKAGLNIVRMNFSH-------G--------SYEYHKSVIDNARKSEELYPGRPLAIAL 83 (265)
T ss_dssp EEEEECCTTTCSHHH---HHHHHHHTEEEEEEETTS-------C--------CHHHHHHHHHHHHHHHHHCCCSCCBCEE
T ss_pred eEEEeeCCCCCCHHH---HHHHHHcCCCEEEEECCC-------C--------CHHHHHHHHHHHHHHhhhccCCceeeec
Confidence 45666652 34433 334555568889999887 1 233334444444432 245655544
Q ss_pred eccc-ccc-cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh--CCCcEEEcCCCCCHHHHH---HHH
Q psy7343 279 RIYQ-DVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--LTIPVIANGNIQCLADVE---ACL 351 (487)
Q Consensus 279 R~~~-d~~-~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--~~iPVi~nGgI~s~~da~---~~l 351 (487)
.+.. ... .-.+..+...+.|+|.|.++ - .....+...++++... -+++||+ .|.+.+.+. +++
T Consensus 84 dl~~p~ltekD~~di~~a~~~~vD~ialS-F-------Vrs~~Di~~~r~~l~~~~~~~~Iia--KIE~~~al~NldeIi 153 (265)
T d1a3xa2 84 DTKGPALSEKDKEDLRFGVKNGVHMVFAS-F-------IRTANDVLTIREVLGEQGKDVKIIV--KIENQQGVNNFDEIL 153 (265)
T ss_dssp ECCCCSSCHHHHHHHHHHHHTTCCEECCT-T-------CCSHHHHHHHHHHHCGGGTTSCCEE--EECSHHHHTTHHHHH
T ss_pred cccchhcccchHHHHHHhhhcccceEeec-c-------CCCHHHHHHHHHHHHHhcCCCeEEe--eccchHHHhChHHHH
Confidence 3322 111 12233456678899999872 1 1111234444444322 2677887 677776554 444
Q ss_pred HhcCCcEEEeccccccC
Q psy7343 352 AQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 352 ~~~Gad~VmiGRa~l~~ 368 (487)
+ -+|||||+||-|+-
T Consensus 154 ~--~sDgimIaRGDLgv 168 (265)
T d1a3xa2 154 K--VTDGVMVARGDLGI 168 (265)
T ss_dssp H--HCSEEEEEHHHHHH
T ss_pred h--hcceeEEEccchhh
Confidence 3 48999999996654
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=87.34 E-value=1.5 Score=35.80 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=54.8
Q ss_pred HhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh--CCCcEEEcCCCCC
Q psy7343 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--LTIPVIANGNIQC 343 (487)
Q Consensus 266 v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--~~iPVi~nGgI~s 343 (487)
+-+..+.-|+-=+ ......++.+.+.+.++|.|.++....... ....+.+.++++. -++||++.|.+.+
T Consensus 26 ~l~~~G~~V~~LG----~~~p~e~iv~a~~~~~~d~v~lS~~~~~~~-----~~~~~~~~~l~~~~~~~i~iivGG~~~~ 96 (137)
T d1ccwa_ 26 AFTNAGFNVVNIG----VLSPQELFIKAAIETKADAILVSSLYGQGE-----IDCKGLRQKCDEAGLEGILLYVGGNIVV 96 (137)
T ss_dssp HHHHTTCEEEEEE----EEECHHHHHHHHHHHTCSEEEEEECSSTHH-----HHHTTHHHHHHHTTCTTCEEEEEESCSS
T ss_pred HHHHCCCeEEecc----cccCHHHHHHHHHhcCCCEEEEeeccccch-----HHHHHHHHHHHHhccCCCEEEEeCCcCC
Confidence 3334466555433 223678999999999999999965422111 0111445556554 2799998887754
Q ss_pred ----HHHHHHHHHhcCCcEEE
Q psy7343 344 ----LADVEACLAQTGVAGVM 360 (487)
Q Consensus 344 ----~~da~~~l~~~Gad~Vm 360 (487)
..+...-+++.|+|+|-
T Consensus 97 ~~~~~~~~~~~l~~~Gv~~if 117 (137)
T d1ccwa_ 97 GKQHWPDVEKRFKDMGYDRVY 117 (137)
T ss_dssp SSCCHHHHHHHHHHTTCSEEC
T ss_pred CccccHHHHHHHHHcCCCEEE
Confidence 66666666688998863
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=87.34 E-value=0.65 Score=40.63 Aligned_cols=127 Identities=9% Similarity=0.052 Sum_probs=76.8
Q ss_pred CCeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIY 281 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~ 281 (487)
.+..+.+.-.+|+++.+.++.+ ++.|..+-|-.|- ..| .+.++++++.+ ++.+.+-.--+
T Consensus 6 ~~~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~--------------~~d----~~~i~~ir~~~~d~~l~vDaN~~ 67 (208)
T d1jpdx1 6 VITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDN--------------HLI----SERMVAIRTAVPDATLIVDANES 67 (208)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS--------------SCH----HHHHHHHHHHCTTSEEEEECTTC
T ss_pred eeeeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCC--------------CcH----HHHHHHHHHhccccEEEEecccc
Confidence 3444555556888887766644 4446655544331 012 33455566665 33333332225
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
|+..+..++.+.+++.++.+|-= . . ...+++..++++. .+||....++.+..++.++. ..+|.+++
T Consensus 68 ~s~~~A~~~~~~l~~~~l~~iEe-P--------~-~~~d~~~~~~l~~--~~pi~~~E~~~~~~~~~~l~--~~~d~~~~ 133 (208)
T d1jpdx1 68 WRAEGLAARCQLLADLGVAMLEQ-P--------L-PAQDDAALENFIH--PLPICADESCHTRSNLKALK--GRYEMVNI 133 (208)
T ss_dssp CCSTTHHHHHHHHHHTTCCEEEC-C--------S-CTTSCGGGGSSCC--SSCEEESTTCSSGGGHHHHB--TTBSEEEE
T ss_pred cchhHHHHHHHHHHhccccccCc-c--------C-CccCHHHHHhhhc--ccceecCCCcCCHHHHHHHh--hccCEEEe
Confidence 67789999999999999988741 1 0 1122333334433 68999999999999998764 44776654
Q ss_pred c
Q psy7343 362 A 362 (487)
Q Consensus 362 G 362 (487)
-
T Consensus 134 d 134 (208)
T d1jpdx1 134 K 134 (208)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=86.79 E-value=2.3 Score=38.39 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=81.7
Q ss_pred CCCeeeeeccCCHHHHHHHH-HhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHH---HHhhhccCcEEEEe
Q psy7343 203 DRPLIIQFCGNDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS---SLRQAVQVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa-~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~---~v~~~~~iPV~vKi 278 (487)
..|+-.|..+..+.+..+++ +.++.. .+.|. ...+...|..+..+.+.+..+++ +++...+--+.+.+
T Consensus 6 ~VPiy~~~G~~~~~~~d~~i~k~~~~~-----~~~~~---~~vK~K~G~~~~~~~e~~~~i~~rI~~~r~~~g~~~~l~i 77 (253)
T d1kcza1 6 AVPVFAQSGDDRYDNVDKMIIKEADVL-----PHALI---NNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHI 77 (253)
T ss_dssp CCCEECCCTTCTTHHHHHHHHTTCSEE-----EECCC---CCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEE
T ss_pred CCCeeeccCCcccccHHHHHHHHhhhh-----hhhhh---hhhchhcCCCccccHHHHHHHHHHHHHHhcccccCceeee
Confidence 46887777766655554443 233221 11122 22233344444344444444444 44444433333333
Q ss_pred ec--------ccccccHHHHHHHHHHcCCcE-EEEEccccCCCCCCCCCCC----HHHHHHHHhh-----CCCcEEEcCC
Q psy7343 279 RI--------YQDVNKTVEYARMLERAGCQL-LAVHGRTVDQRGMNTGLAS----WEHITAVRKA-----LTIPVIANGN 340 (487)
Q Consensus 279 R~--------~~d~~~~~e~a~~le~~G~d~-I~VhgRt~~~~g~~~g~~~----~~~i~~i~~~-----~~iPVi~nGg 340 (487)
.. +|+.++..++...+++.+... +.| +| + . ...+ ++..+++++. .++||++.=.
T Consensus 78 D~~~~~~~n~~~~~~eai~~~~~L~~~~~~y~i~i-----Eq-P-~-~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~ 149 (253)
T d1kcza1 78 DVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRI-----EG-P-M-DVEDRQKQMEAMRDLRAELDGRGVDAELVADEW 149 (253)
T ss_dssp ECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSCEEE-----EC-S-B-CCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred hhhhccCccCCCCHHHHHHHHHHHHHhcCCCCceE-----ec-C-C-CCccHhhHHHHHHHHHHHHhccCCccceecccc
Confidence 21 356677788888888876654 334 11 1 1 1123 3556677665 4799999889
Q ss_pred CCCHHHHHHHHHhcCCcEEEec
Q psy7343 341 IQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 341 I~s~~da~~~l~~~Gad~VmiG 362 (487)
++|.+|+.++++...||.|.+=
T Consensus 150 ~~~~~d~~~~i~~~a~d~v~iK 171 (253)
T d1kcza1 150 CNTVEDVKFFTDNKAGHMVQIK 171 (253)
T ss_dssp CCSHHHHHHHHHTTCSSEEEEC
T ss_pred ccCHHHHHHHHHhCCcCeeecc
Confidence 9999999999977778988763
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.18 E-value=3.1 Score=32.37 Aligned_cols=90 Identities=14% Similarity=0.039 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP 334 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP 334 (487)
|-+.+.++++..-+..+.-|..- .+..++.+.+++...|.|.+--. ..+..-++.++++++...+|
T Consensus 8 Dd~~~~~~l~~~L~~~g~~v~~a-------~~~~eal~~l~~~~~dliilD~~-------mP~~~G~e~~~~ir~~~~~p 73 (119)
T d1zh2a1 8 DEQAIRRFLRTALEGDGMRVFEA-------ETLQRGLLEAATRKPDLIILDLG-------LPDGDGIEFIRDLRQWSAVP 73 (119)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEEE-------SSHHHHHHHHHHHCCSEEEEESE-------ETTEEHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEe-------CCHHHHHHHHHhcCCCEEEeccc-------cCCCCCchHHHHHHhccCCc
Confidence 34445555555544456554433 25677778888888998888333 12223378899999888999
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+|.--+-.+.++..+.+ +.||+..
T Consensus 74 iI~lt~~~~~~~~~~a~-~~Ga~dy 97 (119)
T d1zh2a1 74 VIVLSARSEESDKIAAL-DAGADDY 97 (119)
T ss_dssp EEEEESCCSHHHHHHHH-HHTCSEE
T ss_pred EEEEeccCCHHHHHHHH-HcCCCEE
Confidence 99888888899999999 6788765
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=85.59 E-value=3 Score=37.56 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++ .++.|+++|.|.. ... ++.| +++.+..+++.+++||.---=|.++-++.+.. ..|||+|.+=-+
T Consensus 68 ~~p~~~a~-~~~~gA~aiSVLT--e~~--~F~G--s~~~l~~v~~~~~~PiLrKDFIid~~QI~ear-~~GADavLLI~~ 139 (254)
T d1piia2 68 FDPARIAA-IYKHYASAISVLT--DEK--YFQG--SFNFLPIVSQIAPQPILCKDFIIDPYQIYLAR-YYQADACLLMLS 139 (254)
T ss_dssp CCHHHHHH-HHTTTCSEEEEEC--CST--TTCC--CTTHHHHHHHHCCSCEEEESCCCSHHHHHHHH-HTTCSEEEEETT
T ss_pred chhHHHHH-HHHhccCceEEec--ccc--cCCC--CHHHHHHHHhccccccchhcccCcHHHHHHHH-hhccchhhhhHh
Confidence 46677766 6678999999842 222 3555 35778899999999999998999999999998 799999987766
Q ss_pred cccC
Q psy7343 365 NLYN 368 (487)
Q Consensus 365 ~l~~ 368 (487)
++.+
T Consensus 140 ~L~~ 143 (254)
T d1piia2 140 VLDD 143 (254)
T ss_dssp TCCH
T ss_pred hhcc
Confidence 6543
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=85.56 E-value=7.7 Score=34.56 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=88.6
Q ss_pred CCCeeeeec---c---CCHHHHHHHH---HhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccC
Q psy7343 203 DRPLIIQFC---G---NDSKNLTEAA---KLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV 272 (487)
Q Consensus 203 ~~Pv~Vqi~---g---~d~~~~~~aa---~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i 272 (487)
+.||-|=|| | .+.+++..+. +.+.+. .|+|-+ || ....+ .-|.+.+.++++... +.
T Consensus 50 ~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~dGvV~--G~---L~~dg------~iD~~~~~~L~~~a~---~l 115 (247)
T d1twda_ 50 TIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVT--GV---LDVDG------NVDMPRMEKIMAAAG---PL 115 (247)
T ss_dssp CSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEE--CC---BCTTS------SBCHHHHHHHHHHHT---TS
T ss_pred CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE--EE---ECCCC------CccHHHHHHHHHHhc---cc
Confidence 688888887 2 3556665543 344444 566544 44 11222 247888888877643 67
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l 351 (487)
|++.. |..+...+..+..+.+.+.|++.|.-+|.... -....+.++++.+.. +.-|++.|||+ .+.+.+++
T Consensus 116 ~vTFH-RAfD~~~d~~~al~~Li~lG~~rILTSGg~~~------a~~G~~~L~~L~~~a~~~iIm~GgGI~-~~Ni~~l~ 187 (247)
T d1twda_ 116 AVTFH-RAFDMCANPLYTLNNLAELGIARVLTSGQKSD------ALQGLSKIMELIAHRDAPIIMAGAGVR-AENLHHFL 187 (247)
T ss_dssp EEEEC-GGGGGCSCHHHHHHHHHHHTCCEEEECTTSSS------TTTTHHHHHHHHTSSSCCEEEEESSCC-TTTHHHHH
T ss_pred Ceeee-hhhhhhCCHHHHHHHHHhcCCCeEeccCCCCc------hhHHHHHHHHHHHhcCCcEEEecCCCC-HHHHHHHH
Confidence 77775 44444568888899999999999988775321 122367777776654 33367778876 46788888
Q ss_pred HhcCCcEEEec
Q psy7343 352 AQTGVAGVMTA 362 (487)
Q Consensus 352 ~~~Gad~VmiG 362 (487)
++|++-+-.+
T Consensus 188 -~~g~~e~H~s 197 (247)
T d1twda_ 188 -DAGVLEVHSS 197 (247)
T ss_dssp -HHTCSEEEEC
T ss_pred -HcCCCEEEEC
Confidence 5898877653
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=85.50 E-value=3.1 Score=36.58 Aligned_cols=119 Identities=11% Similarity=0.084 Sum_probs=79.0
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIY 281 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~ 281 (487)
.|++.=++..++++..+.++.+.+. +..|||-+.. +. ..+.++.+++.. ++-|.+ +
T Consensus 17 ~~iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~-----------------p~-a~~~i~~l~~~~p~~~vGa-G--- 74 (216)
T d1mxsa_ 17 ARILPVITIAREEDILPLADALAAGGIRTLEVTLRS-----------------QH-GLKAIQVLREQRPELCVGA-G--- 74 (216)
T ss_dssp HSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSS-----------------TH-HHHHHHHHHHHCTTSEEEE-E---
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCC-----------------hh-HHHHHHHHHHhCCCcceee-e---
Confidence 3688888888999999999988776 5555554332 22 234555666655 332322 2
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.+..+ ++.+.++|++.++- . ..+-+.++ .....++|++= |+.|+.++..++ +.|++.|=+
T Consensus 75 -TV~~~~~-~~~a~~aGa~Fivs-P-----------~~~~~v~~-~a~~~~i~~iP--Gv~TpsEi~~A~-~~G~~~vKl 136 (216)
T d1mxsa_ 75 -TVLDRSM-FAAVEAAGAQFVVT-P-----------GITEDILE-AGVDSEIPLLP--GISTPSEIMMGY-ALGYRRFKL 136 (216)
T ss_dssp -CCCSHHH-HHHHHHHTCSSEEC-S-----------SCCHHHHH-HHHHCSSCEEC--EECSHHHHHHHH-TTTCCEEEE
T ss_pred -eeecHHH-HHHHHhCCCCEEEC-C-----------CCcHHHHH-HHHhcCCCccC--CcCCHHHHHHHH-HCCCCEEEe
Confidence 5555444 56777899998864 1 12344444 44456888876 899999999999 799999875
Q ss_pred c
Q psy7343 362 A 362 (487)
Q Consensus 362 G 362 (487)
=
T Consensus 137 F 137 (216)
T d1mxsa_ 137 F 137 (216)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.48 E-value=6.3 Score=30.41 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI 336 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi 336 (487)
....+++..+-+..+.-|..- .+..++.+.+++...|.|.+.-. ..+..-++.++.++....+|||
T Consensus 11 ~~~~~~l~~~L~~~g~~v~~a-------~~~~~a~~~~~~~~~dliilD~~-------mp~~~g~~~~~~~~~~~~~piI 76 (120)
T d1zgza1 11 PVTQARLQSYFTQEGYTVSVT-------ASGAGLREIMQNQSVDLILLDIN-------LPDENGLMLTRALRERSTVGII 76 (120)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE-------SSHHHHHHHHHHSCCSEEEEESC-------CSSSCHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHhcCCCEEeeehh-------hccchhHHHHHHHhccCCCeEE
Confidence 334444444444445544433 25678888888889999988433 2233346888888888899999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
..-+-.+.++..+.+ +.||+...
T Consensus 77 ~lt~~~~~~~~~~a~-~~Ga~dyl 99 (120)
T d1zgza1 77 LVTGRSDRIDRIVGL-EMGADDYV 99 (120)
T ss_dssp EEESSCCHHHHHHHH-HHTCSEEE
T ss_pred EEEccCCHHHHHHHH-HCCCCEEE
Confidence 888888999999998 68888654
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=84.38 E-value=7.3 Score=30.10 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TI 333 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~i 333 (487)
|-..+.++++.+-+..+.-|..- .+..++...+++...|.|.+.-. ..+..-++.++++++.- ++
T Consensus 8 Dd~~~~~~l~~~L~~~G~~v~~a-------~~g~eal~~l~~~~~dliilD~~-------mP~~~G~e~~~~i~~~~~~~ 73 (119)
T d2pl1a1 8 DNALLRHHLKVQIQDAGHQVDDA-------EDAKEADYYLNEHIPDIAIVDLG-------LPDEDGLSLIRRWRSNDVSL 73 (119)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEE-------SSHHHHHHHHHHSCCSEEEECSC-------CSSSCHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHhcccceeehhcc-------CCCchhHHHHHHHHhcCccc
Confidence 33444555555444456554432 36677788888888998888222 22223378899998764 89
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
||+.-.+-.+.++..+.+ +.||++.
T Consensus 74 pvi~lt~~~~~~~~~~a~-~~Ga~~y 98 (119)
T d2pl1a1 74 PILVLTARESWQDKVEVL-SAGADDY 98 (119)
T ss_dssp CEEEEESCCCHHHHHHHH-HTTCSEE
T ss_pred ceEeeeccCCHHHHHHHH-HcCCCEE
Confidence 999888888999999999 6899875
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=84.31 E-value=0.81 Score=42.00 Aligned_cols=86 Identities=15% Similarity=0.052 Sum_probs=50.1
Q ss_pred ccccHHHHHHHHH-HcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH---HHhcCC
Q psy7343 283 DVNKTVEYARMLE-RAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC---LAQTGV 356 (487)
Q Consensus 283 d~~~~~e~a~~le-~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~---l~~~Ga 356 (487)
|.+...+.++.+. +.|+++|.+-|-|.+.. .++-.-..+.++.+.+.. ++||++.=+=.+.+++.++ .++.|+
T Consensus 22 D~~~l~~~i~~li~~~Gv~gi~v~GttGE~~-~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Ga 100 (293)
T d1f74a_ 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENF-MLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 100 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGG-GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECccCcchh-hCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCC
Confidence 3445666677664 45999999944433221 111111124444444444 6899865444566666554 335799
Q ss_pred cEEEeccccccCc
Q psy7343 357 AGVMTAEGNLYNP 369 (487)
Q Consensus 357 d~VmiGRa~l~~P 369 (487)
|++|+....+..|
T Consensus 101 d~i~~~pP~~~~~ 113 (293)
T d1f74a_ 101 DCLSAVTPFYYKF 113 (293)
T ss_dssp SEEECCCCCSSCC
T ss_pred CEeeccCcccccc
Confidence 9999987776543
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=84.23 E-value=3.8 Score=32.05 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TI 333 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~i 333 (487)
|-..+.+.++.+-+..+..|..- .+..++.+.+++...|.|.+.-+ ..+..-++.++++++.. ++
T Consensus 11 Dd~~~~~~l~~~L~~~g~~v~~a-------~~~~~a~~~l~~~~~dlii~D~~-------mp~~~G~el~~~l~~~~~~~ 76 (123)
T d1krwa_ 11 DDSSIRWVLERALAGAGLTCTTF-------ENGNEVLAALASKTPDVLLSDIR-------MPGMDGLALLKQIKQRHPML 76 (123)
T ss_dssp SSHHHHHHHHHHHHHTTCEEEEE-------SSSHHHHHHHTTCCCSEEEECCS-------SSSSTTHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEe-------CCHHHHHHHHHhCCCCEEEehhh-------cCCchHHHHHHHHHHhCCCC
Confidence 44445555555544556555432 25567777888888999888322 22233478888887754 89
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
|||...+..+.+++.+.+ +.|++..
T Consensus 77 piI~~t~~~~~~~~~~a~-~~Ga~dy 101 (123)
T d1krwa_ 77 PVIIMTAHSDLDAAVSAY-QQGAFDY 101 (123)
T ss_dssp CEEESCCCSCHHHHHHHH-HHTEEEE
T ss_pred eEEEEecCCCHHHHHHHH-HcCCCeE
Confidence 999999999999999999 6787653
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.19 E-value=1.6 Score=39.68 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=40.4
Q ss_pred CCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe
Q psy7343 213 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278 (487)
Q Consensus 213 ~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi 278 (487)
.|.+...+.|+ ++++..+.||||+|-|. ....+.+.++++.+.+.+++|+++..
T Consensus 37 ~d~d~~~~~A~~qv~~GA~iLDIn~~~~~------------~~e~~~m~~li~~l~~~~d~PlsIDT 91 (260)
T d3bofa1 37 GNEEIVIKEAKTQVEKGAEVLDVNFGIES------------QIDVRYVEKIVQTLPYVSNVPLSLDI 91 (260)
T ss_dssp TCSHHHHHHHHHHHHTTCSEEEEECSSGG------------GSCHHHHHHHHHHHHHHTCSCEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeecCCch------------hhhHHHHHHHHHHHHhcCCCCccccC
Confidence 36666666555 56666999999988642 13577888899999989999999863
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=84.11 E-value=4.4 Score=31.55 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC---
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--- 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--- 331 (487)
|-....++++.+-+..+.-|..- .+..++.+.+.+...|.|.+.-. ..+..-++.++++++.-
T Consensus 9 D~~~~~~~l~~~L~~~g~~v~~a-------~~~~~al~~~~~~~~dlil~D~~-------mp~~dG~el~~~ir~~~~~~ 74 (123)
T d1mb3a_ 9 DNELNMKLFHDLLEAQGYETLQT-------REGLSALSIARENKPDLILMDIQ-------LPEISGLEVTKWLKEDDDLA 74 (123)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEE-------SCHHHHHHHHHHHCCSEEEEESB-------CSSSBHHHHHHHHHHSTTTT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHhCCCCEEEEEec-------cCCCcHHHHHHHHHhCCCcC
Confidence 33444555555545556554432 35677777888888998888322 22333478888998753
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
++||+.-.+..+.++..+++ +.||++.
T Consensus 75 ~iPii~lt~~~~~~~~~~~~-~~G~~~~ 101 (123)
T d1mb3a_ 75 HIPVVAVTAFAMKGDEERIR-EGGCEAY 101 (123)
T ss_dssp TSCEEEEC------CHHHHH-HHTCSEE
T ss_pred CCCeEEEEEecCHHHHHHHH-HcCCCEE
Confidence 78998877777788888888 6899875
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=83.59 E-value=6.3 Score=31.29 Aligned_cols=89 Identities=9% Similarity=0.118 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcE
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPV 335 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPV 335 (487)
..+.+.++.+-+..+.-|..- .+..++...+.+...|.|.+.-. ..+..-.+.++++++.. ++||
T Consensus 10 ~~~~~~l~~~L~~~g~~v~~a-------~~~~eAl~~l~~~~~dlvilD~~-------mp~~~G~e~~~~lr~~~~~~pi 75 (137)
T d1ny5a1 10 KVFRGLLEEYLSMKGIKVESA-------ERGKEAYKLLSEKHFNVVLLDLL-------LPDVNGLEILKWIKERSPETEV 75 (137)
T ss_dssp HHHHHHHHHHHHHHTCEEEEE-------SSHHHHHHHHHHSCCSEEEEESB-------CSSSBHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHhhccccccchHHHh-------hhhhhHHHHHHHHHHhCCCCCE
Confidence 344444444444445544432 26678888888889999988432 22333468888888764 7999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
|.--+-.+.+.+.+++ +.||+...
T Consensus 76 I~lT~~~~~~~~~~a~-~~Ga~dyl 99 (137)
T d1ny5a1 76 IVITGHGTIKTAVEAM-KMGAYDFL 99 (137)
T ss_dssp EEEEETTCHHHHHHHH-TTTCCEEE
T ss_pred EEEECCCCHHHHHHHH-HcCCCEEE
Confidence 8877778899999999 78888754
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.30 E-value=1.1 Score=40.36 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHhhh--ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH----HHHHHH
Q psy7343 254 DDWPLLTNLVSSLRQA--VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW----EHITAV 327 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~--~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~i 327 (487)
.+.+.+.++-+.+++. .+++|++|+- +......+-+.++. +|+||| +|+.... ..+.... ..+-+.
T Consensus 97 r~~~Dv~~~r~~l~~~~~~~~~iiaKIE---~~~al~nldeIi~~--sDgImI-aRGDLg~--ei~~e~vp~~Qk~ii~~ 168 (246)
T d1e0ta2 97 RKRSDVIEIREHLKAHGGENIHIISKIE---NQEGLNNFDEILEA--SDGIMV-ARGDLGV--EIPVEEVIFAQKMMIEK 168 (246)
T ss_dssp CSHHHHHHHHHHHHTTTCTTCEEEEEEC---SHHHHHTHHHHHHH--SSEEEE-EHHHHHH--HSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEec---chhhhhchHHHHhh--cceEEE-Eccchhh--hCCHHHHHHHHHHHHHH
Confidence 3455555555555443 2578999992 22223333334443 699999 8864321 1111111 222233
Q ss_pred HhhCCCcEEEcCCCC---------CHH---HHHHHHHhcCCcEEEec
Q psy7343 328 RKALTIPVIANGNIQ---------CLA---DVEACLAQTGVAGVMTA 362 (487)
Q Consensus 328 ~~~~~iPVi~nGgI~---------s~~---da~~~l~~~Gad~VmiG 362 (487)
....+.|||....+. |.. |+..++ .-|+|+||+.
T Consensus 169 ~~~~~kpvi~ATq~LeSM~~~p~PTRAEv~Dv~nav-~dG~D~vmLs 214 (246)
T d1e0ta2 169 CIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAI-LDGTDAVMLS 214 (246)
T ss_dssp HHHHTCEEEEECC---------CCCHHHHHHHHHHH-HHTCSEEEEC
T ss_pred HHHhCCCEEEehhhhhhhhcCCCCchHHHHHHHHHH-HhCCcEEEEc
Confidence 344589999877664 344 555555 4699999985
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.79 E-value=5.3 Score=31.63 Aligned_cols=90 Identities=16% Similarity=0.273 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TI 333 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~i 333 (487)
|-....++++.+-+..+.-|..- .+..++.+.+.+...|.|.+.-. ..+..-++.++++++.- .+
T Consensus 16 D~~~~~~~l~~~L~~~g~~v~~a-------~~g~ea~~~~~~~~~dlillD~~-------mP~~dG~el~~~ir~~~~~~ 81 (133)
T d2ayxa1 16 DHPINRRLLADQLGSLGYQCKTA-------NDGVDALNVLSKNHIDIVLSDVN-------MPNMDGYRLTQRIRQLGLTL 81 (133)
T ss_dssp SSHHHHHHHHHHHHHHTSEEEEE-------CCSHHHHHHHHHSCCSEEEEEES-------SCSSCCHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHcCCEEEEE-------CcHHHHHHHHhccCceEEEEecc-------CCCCCHHHHHHHHHHhCCCC
Confidence 44445555555555556655432 25566777788889999988433 22333478888888753 78
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
||+.-.+-.+.++..+++ +.|++..
T Consensus 82 pii~lt~~~~~~~~~~~~-~~G~~~~ 106 (133)
T d2ayxa1 82 PVIGVTANALAEEKQRCL-ESGMDSC 106 (133)
T ss_dssp CEEEEESSTTSHHHHHHH-HCCCEEE
T ss_pred CEEEEeccCCHHHHHHHH-HcCCCEE
Confidence 988777777888899998 6898765
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=82.49 E-value=8.9 Score=29.55 Aligned_cols=90 Identities=11% Similarity=0.067 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TI 333 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~i 333 (487)
|-..+.++++.+-+..+..|..- .+..+..+.+.+...|.|.+--. ..|..-++.++++++.. ++
T Consensus 9 D~~~~~~~l~~~L~~~g~~v~~a-------~~g~eal~~~~~~~~dlillD~~-------mP~~~G~el~~~lr~~~~~~ 74 (119)
T d1peya_ 9 DQSGIRILLNEVFNKEGYQTFQA-------ANGLQALDIVTKERPDLVLLDMK-------IPGMDGIEILKRMKVIDENI 74 (119)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEE-------SSHHHHHHHHHHHCCSEEEEESC-------CTTCCHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHcCCEEEEe-------CCHHHHHHHHHhCCCCEEEEecc-------CCCCCHHHHHHHHHHhCCCC
Confidence 33445555555544456554432 25667777888888998888333 22333478888888765 79
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
|||.--+-.+.+++.+.+ +.|+++.
T Consensus 75 pvi~lt~~~~~~~~~~a~-~~Ga~~y 99 (119)
T d1peya_ 75 RVIIMTAYGELDMIQESK-ELGALTH 99 (119)
T ss_dssp EEEEEESSCCHHHHHHHH-HTTCCEE
T ss_pred cEEEEecCCCHHHHHHHH-HCCCCEE
Confidence 999877888899999988 6888875
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=82.21 E-value=1.3 Score=40.30 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=60.1
Q ss_pred HHHHHHHhhhccCcEEEEeec-ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC-----------------CCH
Q psy7343 260 TNLVSSLRQAVQVPVSCKIRI-YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL-----------------ASW 321 (487)
Q Consensus 260 ~eiv~~v~~~~~iPV~vKiR~-~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~-----------------~~~ 321 (487)
.+..+.+++.-..-++.=+-. .+|.+++.++++.+.+.|+|.|-+ |=-..+ +...|+ ..+
T Consensus 5 ~~~f~~~~~~~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiEl-GiPfSD-P~aDGpvIq~a~~rAL~~G~~~~~~~ 82 (261)
T d1rd5a_ 5 SDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIEL-GVPCSD-PYIDGPIIQASVARALASGTTMDAVL 82 (261)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEE-ECCCSC-CTTSCHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEE-CCCCCC-cCcCCcceeeeeeeccccCcchhhhh
Confidence 344455554422222222222 246678999999999999999999 521110 001111 134
Q ss_pred HHHHHHHhhCCCcEEEcCCCCCHHH--HHHHHHhcCCcEEEe
Q psy7343 322 EHITAVRKALTIPVIANGNIQCLAD--VEACLAQTGVAGVMT 361 (487)
Q Consensus 322 ~~i~~i~~~~~iPVi~nGgI~s~~d--a~~~l~~~Gad~Vmi 361 (487)
+.++++++..++|++..+-.+..-. ++++ .+.|+||+++
T Consensus 83 ~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~-~~~GvdG~Ii 123 (261)
T d1rd5a_ 83 EMLREVTPELSCPVVLLSYYKPIMFRSLAKM-KEAGVHGLIV 123 (261)
T ss_dssp HHHHHHGGGCSSCEEEECCSHHHHSCCTHHH-HHTTCCEEEC
T ss_pred hhhhcccccccCceeeeeeecchhhHHHHHH-HhcCceeeee
Confidence 7788888888999998776543332 2333 4789999986
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=81.47 E-value=2 Score=41.58 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=62.0
Q ss_pred CCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCc---ceeeccCccc-cccCChHHHHHHHHHHhhhc--cCcE
Q psy7343 203 DRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQ---MVAKRGHYGA-YLQDDWPLLTNLVSSLRQAV--QVPV 274 (487)
Q Consensus 203 ~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~---~i~~~gr~G~-~l~~d~~~i~eiv~~v~~~~--~iPV 274 (487)
..|+.|||-- -+.+++.++++.+++. .|+|-+.-.-.. .......+|+ ....-.....+++..+++.+ ++||
T Consensus 266 ~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipI 345 (409)
T d1tv5a1 266 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPI 345 (409)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCE
T ss_pred CCceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceE
Confidence 3478999984 3567788888888776 787765432211 0001111121 11111234566677777777 4899
Q ss_pred EEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 275 ~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
++-+ .+.+..|+.+.+. +||+.|.|
T Consensus 346 IGvG----GI~s~~Da~e~i~-AGAs~VQv 370 (409)
T d1tv5a1 346 IASG----GIFSGLDALEKIE-AGASVCQL 370 (409)
T ss_dssp EEES----SCCSHHHHHHHHH-TTEEEEEE
T ss_pred EEEC----CCCCHHHHHHHHH-cCCCHHhh
Confidence 9987 7888999888776 69999999
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=81.42 E-value=1.9 Score=36.47 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=50.8
Q ss_pred hhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH----HHHHHHHhh-C-CCcEEEcCCC
Q psy7343 268 QAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW----EHITAVRKA-L-TIPVIANGNI 341 (487)
Q Consensus 268 ~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~i~~~-~-~iPVi~nGgI 341 (487)
+..+.-|+.-+ -....+++++.+.+.++|.|.++.- .+ .+. +.++++++. . ++||++ ||+
T Consensus 62 ~~~G~eVi~lg----~~~~~e~iv~aa~~~~advI~iSs~--------~~-~~~~~~~~l~~~L~~~g~~~v~Viv-GG~ 127 (168)
T d7reqa2 62 ADLGFDVDVGP----LFQTPEETARQAVEADVHVVGVSSL--------AG-GHLTLVPALRKELDKLGRPDILITV-GGV 127 (168)
T ss_dssp HHTTCEEEECC----TTBCHHHHHHHHHHHTCSEEEEEEC--------SS-CHHHHHHHHHHHHHHTTCTTSEEEE-EES
T ss_pred HhCCcceecCC----CcCcHHHHHHHHHccCCCEEEEecC--------cc-cchHHHHHHHHHHHhcCCCCeEEEE-eCC
Confidence 34577666543 4457899999999999999999522 11 122 444555554 2 577776 556
Q ss_pred CCHHHHHHHHHhcCCcEE
Q psy7343 342 QCLADVEACLAQTGVAGV 359 (487)
Q Consensus 342 ~s~~da~~~l~~~Gad~V 359 (487)
--.+|...+. +.|+|.|
T Consensus 128 ip~~d~~~l~-~~Gv~~i 144 (168)
T d7reqa2 128 IPEQDFDELR-KDGAVEI 144 (168)
T ss_dssp CCGGGHHHHH-HHTEEEE
T ss_pred CCHHHHHHHH-hCCCCEE
Confidence 5667777766 7899875
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=81.16 E-value=3.1 Score=38.72 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=59.7
Q ss_pred CCCCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEE-eec--CCCcc--eeeccCccc-cccCChHHHHHHHHHHhhhc--
Q psy7343 201 PEDRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGID-INI--GCPQM--VAKRGHYGA-YLQDDWPLLTNLVSSLRQAV-- 270 (487)
Q Consensus 201 ~~~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~Id-iN~--GcP~~--i~~~gr~G~-~l~~d~~~i~eiv~~v~~~~-- 270 (487)
..+.|+.+|+.- .+.+++.+.++.+.+. .+++. +|. +-+.. ......+|+ ....-.....+.++.+++.+
T Consensus 209 ~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~ 288 (336)
T d1f76a_ 209 HKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNG 288 (336)
T ss_dssp TSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTT
T ss_pred cCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCC
Confidence 456899999984 3456777777766554 56554 332 11110 001111121 11111233445666677766
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
++|+++-+ .+.+..|+.+.+. +||+.|.|
T Consensus 289 ~ipIIG~G----GI~s~~Da~e~i~-aGAsaVQv 317 (336)
T d1f76a_ 289 RLPIIGVG----GIDSVIAAREKIA-AGASLVQI 317 (336)
T ss_dssp SSCEEEES----SCCSHHHHHHHHH-HTCSEEEE
T ss_pred CCeEEEEC----CCCCHHHHHHHHH-cCCcHHHH
Confidence 68999987 7888888887765 79999999
|
| >d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: GlpP-like family: GlpP-like domain: Glycerol uptake operon antiterminator-related protein TM1436 species: Thermotoga maritima [TaxId: 2336]
Probab=80.77 E-value=0.62 Score=39.71 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=53.6
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
++..+-++=+ -|........+.+++...|+|-| +.|.. .. +-+++..+.|||+.|=|.+.+|+.++
T Consensus 90 Gl~tIqR~Fl-iDS~al~~~~~~i~~~~PD~IEi----------LPG~i-~p--~ii~~~~~~piIAGGLI~~~edv~~a 155 (172)
T d1vkfa_ 90 GIPAVLRFFA-LDSKAVERGIEQIETLGVDVVEV----------LPGAV-AP--KVARKIPGRTVIAAGLVETEEEAREI 155 (172)
T ss_dssp TCCEEEEEEC-CSHHHHHHHHHHHHHHTCSEEEE----------ESGGG-HH--HHHTTSTTSEEEEESCCCSHHHHHHH
T ss_pred CCeEEEEEEe-eehHHHHHHHHHHhhcCCCEEEE----------CCchh-hH--HHHHHhcCCCEEeeCCcCCHHHHHHH
Confidence 5544444322 25567788888999999999999 33311 11 12345567899999999999999999
Q ss_pred HHhcCCcEEEeccc
Q psy7343 351 LAQTGVAGVMTAEG 364 (487)
Q Consensus 351 l~~~Gad~VmiGRa 364 (487)
+ ..|+ +|.-..-
T Consensus 156 l-~~g~-aVSTS~~ 167 (172)
T d1vkfa_ 156 L-KHVS-AISTSSR 167 (172)
T ss_dssp T-TTSS-EEEECCH
T ss_pred H-hcCe-EEECCCh
Confidence 9 5554 8876543
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=80.75 E-value=1.9 Score=38.99 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHhhh-ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH----HHHHHHHh
Q psy7343 255 DWPLLTNLVSSLRQA-VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW----EHITAVRK 329 (487)
Q Consensus 255 d~~~i~eiv~~v~~~-~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~i~~ 329 (487)
+.+.+.++-+.+.+. .++.+++|+ .+......+-+.++. .|+||| +|+.... ..+.... ..+-+...
T Consensus 116 s~~Dv~~ir~~l~~~~~~~~iiaKI---E~~~al~nldeI~~~--sDgImI-aRGDLg~--ei~~e~vp~~Qk~Ii~~~~ 187 (258)
T d1pkla2 116 SAEQVGDVRKALGPKGRDIMIICKI---ENHQGVQNIDSIIEE--SDGIMV-ARGDLGV--EIPAEKVVVAQKILISKCN 187 (258)
T ss_dssp SHHHHHHHHHHHCGGGTTSEEEEEE---CSHHHHHTHHHHHHH--SSEEEE-CHHHHTT--TSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEe---cCchhhhhhhhHHhh--CCeeeE-echhhhh--hcchhhhhhHHHHHHHHHH
Confidence 445555544444432 367899998 222222333333433 799999 8865332 1121111 12222233
Q ss_pred hCCCcEEEcCCC---------CCHH---HHHHHHHhcCCcEEEec
Q psy7343 330 ALTIPVIANGNI---------QCLA---DVEACLAQTGVAGVMTA 362 (487)
Q Consensus 330 ~~~iPVi~nGgI---------~s~~---da~~~l~~~Gad~VmiG 362 (487)
..+.|||....+ -|.. |+...+ .-|+|+||+.
T Consensus 188 ~~~kpvivATq~LeSM~~~~~PTRAEv~Dvanav-~dG~D~imLs 231 (258)
T d1pkla2 188 VAGKPVICATQMLESMTYNPRPTRAEVSDVANAV-FNGADCVMLS 231 (258)
T ss_dssp HHTCCEEECSSSSGGGGTSSSCCHHHHHHHHHHH-HHTCSEEEES
T ss_pred HcCCCEEEEeceeHhhccCCCCCHHHHHHHHHHH-HhCCCEEEEc
Confidence 458999986643 4444 555555 4699999986
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=80.71 E-value=8.9 Score=34.43 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=77.3
Q ss_pred eeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCc-EEEEeecc--ccc
Q psy7343 209 QFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP-VSCKIRIY--QDV 284 (487)
Q Consensus 209 qi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iP-V~vKiR~~--~d~ 284 (487)
.+...|. ..|++++++ .|.|=+ |-....+.+|. .+.+.-..+......++|++..+-. +++-+..+ .+.
T Consensus 19 ~lTayD~----~~A~~~~~agvDiiLV--GDSlgmv~~G~-~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~~~ 91 (262)
T d1m3ua_ 19 TITAYDY----SFAKLFADEGLNVMLV--GDSLGMTVQGH-DSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATP 91 (262)
T ss_dssp EEECCSH----HHHHHHHHHTCCEEEE--CTTHHHHTTCC-SSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSH
T ss_pred EEEcCCH----HHHHHHHHCCCCEEEE--cCcHHhcccCC-CCcceechHhHHHHHHHHHhccccceeEeccccccchhh
Confidence 3445553 234455554 454433 22222334442 3334445677777778887776444 44455442 123
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc-----------CCC----CCHHHHHH
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN-----------GNI----QCLADVEA 349 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n-----------GgI----~s~~da~~ 349 (487)
++....+..+.++|||+|-+-| |....+.++.+.+ .+|||++- ||. .|.+++.+
T Consensus 92 ~~a~~~a~~l~~~GAdaVKlEg----------g~~~~~~I~~L~~-~gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ea~~ 160 (262)
T d1m3ua_ 92 EQAFENAATVMRAGANMVKIEG----------GEWLVETVQMLTE-RAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQ 160 (262)
T ss_dssp HHHHHHHHHHHHTTCSEEECCC----------SGGGHHHHHHHHH-TTCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEecc----------chhHHHHHHHHHH-cCCeEEeehhhchhhhhhcCCccccCccHHHHHH
Confidence 4556666777789999998822 2233566766664 48999872 552 56777765
Q ss_pred HH------HhcCCcEEEe
Q psy7343 350 CL------AQTGVAGVMT 361 (487)
Q Consensus 350 ~l------~~~Gad~Vmi 361 (487)
++ ++.||.++.+
T Consensus 161 l~~~a~~le~AGaf~ivl 178 (262)
T d1m3ua_ 161 LLSDALALEAAGAQLLVL 178 (262)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhhcceEEEE
Confidence 54 4579988864
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.25 E-value=2.8 Score=39.60 Aligned_cols=96 Identities=14% Similarity=0.211 Sum_probs=60.3
Q ss_pred CCCCeeeeeccC-CHHHHHHHHHhhCCc-CcEEEeecCCCcc-e-------eeccCccccccCChHHHHHHHHHHhhhc-
Q psy7343 202 EDRPLIIQFCGN-DSKNLTEAAKLAEPH-CDGIDINIGCPQM-V-------AKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270 (487)
Q Consensus 202 ~~~Pv~Vqi~g~-d~~~~~~aa~~~~~~-~d~IdiN~GcP~~-i-------~~~gr~G~~l~~d~~~i~eiv~~v~~~~- 270 (487)
.+.|+.+|+..+ +..+..++++.+.++ .++|.+.-..... + ...+++++ ..-.....+.++.+++..
T Consensus 219 ~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG--~~~~~i~l~~v~~v~~~~~ 296 (367)
T d1d3ga_ 219 HRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSG--KPLRDLSTQTIREMYALTQ 296 (367)
T ss_dssp GCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEE--GGGHHHHHHHHHHHHHHTT
T ss_pred cCCccccccCcccchhhhhhhHHHHHhhhhheeeccccccccccccccccccccccccc--ccchhhhHHHHHHHHHHhC
Confidence 357999999853 566777777777665 7777653222110 0 01111111 222344455556666544
Q ss_pred -cCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 271 -QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 271 -~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
++|+++-+ .+.+..|+.+.+. +||+.|.|
T Consensus 297 ~~ipIig~G----GI~s~~Da~e~i~-aGAs~VQi 326 (367)
T d1d3ga_ 297 GRVPIIGVG----GVSSGQDALEKIR-AGASLVQL 326 (367)
T ss_dssp TCSCEEEES----SCCSHHHHHHHHH-HTCSEEEE
T ss_pred CCccEEEEC----CCCCHHHHHHHHH-cCCCHHHh
Confidence 68999987 7888899887775 79999999
|