Psyllid ID: psy74

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKNEFCTV
Secondary Structure (PSIPRED)
cEEEEEcccccccEEEccEEEEEEcccEEEEEcccccEEEEEEEccccccccEEEEEcccccEEEEEEEccccccccEEEEEEccccccccccccccccccccEEEEEEccEEEEEccccEEEEEcccccEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccEEEcccEEEEEEccEEEEEEccccccccEEEEccccccccEEEEEcccccEEEEEEcccccccccEEEEEEEcccccccccccccccccccEEEEEEEcEEEEEEcccEEEEEEccccEEEc
Coil and Loop (DISEMBL)
mvvfkfererpaytvhnnVMYYVKERFLhrldltnskdSVVMQLrgggripahsisynateHSILVTTrnannfenstydlymipkeeserkevadgkrsTGISAVWVARNRFAVLDRNHTILIKNlknefctv
Flexible Loop (DISEMBL)
mvvfkfererpaytvhnnvmyYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEeserkevadgkrstgisavwvarnrfavldrnhtiliknlknefctv
Low Complexity Region (SEG)
MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKNEFCTV
Disordered region (IsUnstruct)
***FKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMI****************TGISAVWVARNRFAVLDRNHTILIKNLKNEFC**
Disordered Region (DISOPRED)
MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSK************IPAHSISYNATEHSILVTTRNANNFENSTYDLYMI*****************GISAVWVARNRFAVLDRNHTILIKNLKN*****
Disordered Region (DISEMBL)
MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEE************TGISAVWVARNRFAVLDRNHTILIKNLKNEFCTV
Disordered Region (DISPRO)
MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEE************TGISAVWVARNRFAVLDRNHTILIKNLKNEFCTV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKNEFCTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q27954	1224	Coatomer subunit alpha OS	yes	N/A	0.962	0.105	0.618	1e-44
Q8CIE6	1224	Coatomer subunit alpha OS	yes	N/A	0.962	0.105	0.618	1e-44
P53621	1224	Coatomer subunit alpha OS	yes	N/A	0.962	0.105	0.618	2e-44
Q9SJT9	1218	Coatomer subunit alpha-2	yes	N/A	0.932	0.102	0.423	2e-24
Q94A40	1216	Coatomer subunit alpha-1	no	N/A	0.932	0.102	0.416	4e-24
Q9AUR8	1218	Coatomer subunit alpha-1	yes	N/A	0.947	0.104	0.394	1e-23
Q9AUR7	1218	Coatomer subunit alpha-2	yes	N/A	0.947	0.104	0.386	3e-23
Q0J3D9	1218	Coatomer subunit alpha-3	yes	N/A	0.947	0.104	0.379	2e-22
Q55FR9	1221	Coatomer subunit alpha OS	yes	N/A	0.895	0.098	0.318	4e-15
Q96WV5	1207	Putative coatomer subunit	yes	N/A	0.932	0.103	0.358	2e-13

>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/131 (61%), Positives = 106/131 (80%), Gaps = 2/131 (1%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M+VFK ERERPAY VH N+++YVK+RFL +LD  +SKD  VMQLR G + P  S+SYN  
Sbjct: 314 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFSMSYNPA 373

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
           E+++L+ TR A+N ENSTYDLY IPK+ +++  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct: 374 ENAVLLCTR-ASNLENSTYDLYTIPKDADTQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query: 120 HTILIKNLKNE 130
           H++LIKNLKNE
Sbjct: 433 HSLLIKNLKNE 443

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.
Bos taurus (taxid: 9913)

>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2

 Score =  177 bits (450), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/131 (61%), Positives = 106/131 (80%), Gaps = 2/131 (1%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M+VFK ERERPAY VH N+++YVK+RFL +LD  +SKD  VMQLR G + P  ++SYN  
Sbjct: 314 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPA 373

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
           E+++L+ TR A+N ENSTYDLY IPK+ +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct: 374 ENAVLLCTR-ASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query: 120 HTILIKNLKNE 130
           H++LIKNLKNE
Sbjct: 433 HSLLIKNLKNE 443

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.

Mus musculus (taxid: 10090)

>sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2

 Score =  177 bits (449), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/131 (61%), Positives = 106/131 (80%), Gaps = 2/131 (1%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M+VFK ERERPAY VH N+++YVK+RFL +LD  +SKD  VMQLR G + P  ++SYN  
Sbjct: 314 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPA 373

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
           E+++L+ TR A+N ENSTYDLY IPK+ +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct: 374 ENAVLLCTR-ASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query: 120 HTILIKNLKNE 130
           H++LIKNLKNE
Sbjct: 433 HSLLIKNLKNE 443

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.

Homo sapiens (taxid: 9606)

>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 93/137 (67%), Gaps = 12/137 (8%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPA-----HSI 55
           M+VFK ERERPA+ +  + ++Y K+RFL   + +  KDS V+ +R  G  P+      ++
Sbjct: 313 MIVFKLERERPAFALSGDSLFYAKDRFLRYYEYSTQKDSQVIPIRRPG-TPSLNQSPRTL 371

Query: 56  SYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA-DGKRSTGISAVWVARNRFA 114
           SY+ TE+++L+ +    + +  +Y+LY+IPK+   R +V  D KR TG SAV++ARNRFA
Sbjct: 372 SYSPTENAVLICS----DLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVFIARNRFA 427

Query: 115 VLDRNHT-ILIKNLKNE 130
           VL+++ + +L+KNLKNE
Sbjct: 428 VLEKSTSQVLVKNLKNE 444

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 93/137 (67%), Gaps = 12/137 (8%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPA-----HSI 55
           M+VFK ERERPA+ +  + ++Y K+RFL   + +  +DS V+ +R  G  P+      ++
Sbjct: 313 MIVFKLERERPAFALSGDSLFYAKDRFLRYYEYSTQRDSQVIPIRRPG-TPSLNQSPRTL 371

Query: 56  SYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA-DGKRSTGISAVWVARNRFA 114
           SY+ TE+++L+ +    + +  +Y+LY+IPK+   R +V  D KR TG SAV++ARNRFA
Sbjct: 372 SYSPTENAVLICS----DLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVFIARNRFA 427

Query: 115 VLDRNHT-ILIKNLKNE 130
           VL+++ + +L+KNLKNE
Sbjct: 428 VLEKSTSQVLVKNLKNE 444

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 92/137 (67%), Gaps = 10/137 (7%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRI----PAHSIS 56
           M+VFK ERERPA++V  + ++YVK+RFL   + T  K+  +  +R  G +       ++S
Sbjct: 313 MIVFKLERERPAFSVSGDTVFYVKDRFLRFFEFTTQKEVQLAPIRRPGSVSLNQSPKTLS 372

Query: 57  YNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE-VADGKRSTGISAVWVARNRFAV 115
           Y+ TE+++L+ +    + +  +Y+LY++PK+ + R + + D K+  G SAV+VARNRFAV
Sbjct: 373 YSPTENAVLICS----DVDGGSYELYIVPKDSAGRADYLQDAKKGAGGSAVFVARNRFAV 428

Query: 116 LDR-NHTILIKNLKNEF 131
           L++ ++ +L+KNLKNE 
Sbjct: 429 LEKSSNQVLVKNLKNEI 445

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 92/137 (67%), Gaps = 10/137 (7%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRI----PAHSIS 56
           M+VFK ERERPA++V  + ++YVK+RFL   + T  K+  +  +R  G +       ++S
Sbjct: 313 MIVFKLERERPAFSVSGDTVFYVKDRFLRFFEFTTQKEVQLAPIRRPGSVSLNQSPKTLS 372

Query: 57  YNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE-VADGKRSTGISAVWVARNRFAV 115
           Y+ TE+++L+ +    + +  +Y+LY++PK+ + R + + D K+  G SAV+VARNRFAV
Sbjct: 373 YSPTENAVLICS----DVDGGSYELYIVPKDSAGRADYLQDAKKGAGGSAVFVARNRFAV 428

Query: 116 LDR-NHTILIKNLKNEF 131
           L++ ++ +L++NLKNE 
Sbjct: 429 LEKSSNQVLVRNLKNEI 445

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 92/137 (67%), Gaps = 10/137 (7%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRI----PAHSIS 56
           M+VFK ERERPA++V  + ++YVK+RFL   + +  K+  +  +R  G +       ++S
Sbjct: 313 MIVFKLERERPAFSVSGDTVFYVKDRFLRFFEYSTQKEVQLAPIRRPGSVSLNQSPRTLS 372

Query: 57  YNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE-VADGKRSTGISAVWVARNRFAV 115
           Y+ TE+++L+ +    + +  +Y+LY++PK+ + R + + + K+  G SAV+VARNRFAV
Sbjct: 373 YSPTENAVLICS----DVDGGSYELYIVPKDSAGRTDYLQEAKKGAGGSAVFVARNRFAV 428

Query: 116 LDR-NHTILIKNLKNEF 131
           L++ ++ +L+KNLKNE 
Sbjct: 429 LEKSSNQVLVKNLKNEI 445

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 83/135 (61%), Gaps = 15/135 (11%)

Query: 1   MVVFKFERERPAYTVHNNV-MYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPA----HSI 55
           M+VFK ERERP +  + +  ++++K++  +  D    +   +  +    ++P+     ++
Sbjct: 310 MIVFKLERERPLFVQNGDSGVFFLKKKNFNSFDFQAGRTVSLFHI---SKLPSNNGTQTM 366

Query: 56  SYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAV 115
           SYN TE +ILV++    + E  +Y LY IP ++S      + K+ TG++A++V R+RFAV
Sbjct: 367 SYNQTERAILVSS----DAEGGSYHLYKIPPKDSN---TVNTKKGTGVAAIFVGRDRFAV 419

Query: 116 LDRNHTILIKNLKNE 130
           LD+ + ++I++L+NE
Sbjct: 420 LDKGNNVVIRDLENE 434

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 9/134 (6%)

Query: 1   MVVFKFERERPAYTVHNNVMYYV-KERFLHRLDLTNSKDSVVMQLR--GGGRIPAHSISY 57
           ++VFK ERERPA+ ++ N + YV KE+ +   DL  ++ + V  ++  G   +P  S+SY
Sbjct: 321 VMVFKLERERPAHALNINTLLYVNKEKSIVSYDLLRAQSTTVASVKHLGSAWLPPRSLSY 380

Query: 58  NATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLD 117
           N  E   L+T+    + +N  Y+L  +    S    + D  +  G  A++VARNRFAV  
Sbjct: 381 NPAEKVALLTS----SADNGVYELVNV-SSRSNSLPLKDNIKGPGDDAIFVARNRFAVFS 435

Query: 118 R-NHTILIKNLKNE 130
           R + TI IK+L N+
Sbjct: 436 RSDQTIEIKDLSNK 449

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
383850572	1214	PREDICTED: coatomer subunit alpha [Megac	0.962	0.106	0.638	2e-45
307188017	1208	Coatomer subunit alpha [Camponotus flori	0.962	0.106	0.623	9e-45
380014926	1214	PREDICTED: LOW QUALITY PROTEIN: coatomer	0.962	0.106	0.623	1e-44
66504662	1214	PREDICTED: coatomer subunit alpha isofor	0.962	0.106	0.623	1e-44
410929792	1222	PREDICTED: coatomer subunit alpha-like [	0.962	0.105	0.641	1e-44
432911337	1233	PREDICTED: coatomer subunit alpha-like i	0.962	0.104	0.641	2e-44
348519988	1222	PREDICTED: coatomer subunit alpha-like [	0.962	0.105	0.641	2e-44
193627199	1230	PREDICTED: coatomer subunit alpha-like [	0.977	0.106	0.631	2e-44
432911335	1219	PREDICTED: coatomer subunit alpha-like i	0.962	0.105	0.641	2e-44
321472821	1224	hypothetical protein DAPPUDRAFT_301644 [	0.962	0.105	0.646	2e-44

>gi|383850572|ref|XP_003700869.1| PREDICTED: coatomer subunit alpha [Megachile rotundata]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/130 (63%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M++FK ERERPAY V+ NV+YYVKERFL +LD T SKD+ VMQ+RGGG+ P +S+SYN  
Sbjct: 316 MIIFKLERERPAYAVYGNVLYYVKERFLRKLDFTTSKDTSVMQIRGGGKTPPYSMSYNQP 375

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNH 120
           E+++L+ TR  NN ENSTYDLYMIP+E S   + AD KR++G++A+WVARNRFAVLDR +
Sbjct: 376 ENAVLICTRAPNNIENSTYDLYMIPREGSSSTD-ADTKRASGVTAIWVARNRFAVLDRAY 434

Query: 121 TILIKNLKNE 130
           +++IKNLKNE
Sbjct: 435 SLVIKNLKNE 444

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188017|gb|EFN72866.1| Coatomer subunit alpha [Camponotus floridanus]

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 81/130 (62%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M++FK ERERPAY V+ N++YYVK+RFL +LD T SKD+ VMQ+RGGG+ P +S+SYN  
Sbjct: 316 MIIFKLERERPAYAVYGNLLYYVKDRFLRKLDFTTSKDTSVMQIRGGGKTPPYSMSYNQA 375

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNH 120
           E+S+LV TR+ +N ENSTYDLYMIP+E     + AD KR++G++A+WVARNRFAVLDR +
Sbjct: 376 ENSVLVCTRSPSNIENSTYDLYMIPREGDSSTD-ADTKRASGVTAIWVARNRFAVLDRAY 434

Query: 121 TILIKNLKNE 130
           +++IKNLKNE
Sbjct: 435 SLVIKNLKNE 444

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014926|ref|XP_003691465.1| PREDICTED: LOW QUALITY PROTEIN: coatomer subunit alpha-like [Apis florea]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M++FK ERERPAY V+ NV+YYVKERFL +LD T SKD+ VMQ+RGGG+ P +S+SYN  
Sbjct: 316 MIIFKLERERPAYAVYGNVLYYVKERFLRKLDFTTSKDTSVMQIRGGGKTPPYSMSYNQA 375

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNH 120
           E+++L+ TR+ NN ENSTYDLY+IP+E     + AD KR++G++A+WVARNRFAVLDR +
Sbjct: 376 ENAVLICTRSPNNVENSTYDLYIIPREGDSNTD-ADTKRASGVTAIWVARNRFAVLDRAY 434

Query: 121 TILIKNLKNE 130
           +++IKNLKNE
Sbjct: 435 SLVIKNLKNE 444

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66504662|ref|XP_623198.1| PREDICTED: coatomer subunit alpha isoform 1 [Apis mellifera]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 108/130 (83%), Gaps = 1/130 (0%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M++FK ERERPAY V+ NV+YYVKERFL +LD T SKD+ VMQ+RGGG+ P +S+SYN  
Sbjct: 316 MIIFKLERERPAYAVYGNVLYYVKERFLRKLDFTTSKDTSVMQIRGGGKTPPYSMSYNQA 375

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNH 120
           E+++L+ TR+ NN ENSTYDLY+IP+E     + AD KR++G++A+WVARNRFAVLDR +
Sbjct: 376 ENAVLICTRSPNNVENSTYDLYIIPREGDSNTD-ADTKRASGVTAIWVARNRFAVLDRAY 434

Query: 121 TILIKNLKNE 130
           +++IKNLKNE
Sbjct: 435 SLVIKNLKNE 444

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410929792|ref|XP_003978283.1| PREDICTED: coatomer subunit alpha-like [Takifugu rubripes]

 Score =  184 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/131 (64%), Positives = 106/131 (80%), Gaps = 2/131 (1%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M+VFK ERERPAY VH N++YYVK+RFL +LD  +SKD+ VMQLR G + P  S+SYN  
Sbjct: 314 MIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSGSKFPVFSMSYNPA 373

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
           E+++L+ TR A N ENSTYDLY IPKE +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct: 374 ENAVLLCTR-ATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query: 120 HTILIKNLKNE 130
           H++LIKNLKNE
Sbjct: 433 HSLLIKNLKNE 443

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432911337|ref|XP_004078630.1| PREDICTED: coatomer subunit alpha-like isoform 2 [Oryzias latipes]

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/131 (64%), Positives = 106/131 (80%), Gaps = 2/131 (1%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M+VFK ERERPAY VH N++YYVK+RFL +LD  +SKD+ VMQLR G + P  S+SYN  
Sbjct: 314 MIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSGSKFPVFSMSYNPA 373

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
           E+++L+ TR A N ENSTYDLY IPKE +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct: 374 ENAVLLCTR-ATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVWVARNRFAVLDRL 432

Query: 120 HTILIKNLKNE 130
           H++LIKNLKNE
Sbjct: 433 HSLLIKNLKNE 443

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348519988|ref|XP_003447511.1| PREDICTED: coatomer subunit alpha-like [Oreochromis niloticus]

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/131 (64%), Positives = 106/131 (80%), Gaps = 2/131 (1%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M+VFK ERERPAY VH N++YYVK+RFL +LD  +SKD+ VMQLR G + P  S+SYN  
Sbjct: 314 MIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSGSKFPVFSMSYNPA 373

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
           E+++L+ TR A N ENSTYDLY IPKE +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct: 374 ENAVLLCTR-ATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query: 120 HTILIKNLKNE 130
           H++LIKNLKNE
Sbjct: 433 HSLLIKNLKNE 443

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|193627199|ref|XP_001950394.1| PREDICTED: coatomer subunit alpha-like [Acyrthosiphon pisum]

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/133 (63%), Positives = 103/133 (77%), Gaps = 2/133 (1%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M++FK ERERPA+T   N +YYVKERFLHRLD T  K + VMQLRGGGR P +SISYN  
Sbjct: 316 MIIFKLERERPAFTQFGNFLYYVKERFLHRLDFTTHKVTTVMQLRGGGRTPIYSISYNPA 375

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKE--ESERKEVADGKRSTGISAVWVARNRFAVLDR 118
            +++LV TRN++N ENSTYDLY +PKE  +S   EV D KRS+G+ AVW+ARNRFAVLD+
Sbjct: 376 INAMLVCTRNSSNLENSTYDLYQMPKESADSNVSEVPDSKRSSGLMAVWIARNRFAVLDK 435

Query: 119 NHTILIKNLKNEF 131
            H + +KNLKNE 
Sbjct: 436 THMLAVKNLKNEL 448

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432911335|ref|XP_004078629.1| PREDICTED: coatomer subunit alpha-like isoform 1 [Oryzias latipes]

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/131 (64%), Positives = 106/131 (80%), Gaps = 2/131 (1%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           M+VFK ERERPAY VH N++YYVK+RFL +LD  +SKD+ VMQLR G + P  S+SYN  
Sbjct: 314 MIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSGSKFPVFSMSYNPA 373

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
           E+++L+ TR A N ENSTYDLY IPKE +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct: 374 ENAVLLCTR-ATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVWVARNRFAVLDRL 432

Query: 120 HTILIKNLKNE 130
           H++LIKNLKNE
Sbjct: 433 HSLLIKNLKNE 443

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321472821|gb|EFX83790.1| hypothetical protein DAPPUDRAFT_301644 [Daphnia pulex]

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/130 (64%), Positives = 103/130 (79%), Gaps = 1/130 (0%)

Query: 1   MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
           MV+FK ERERPAY++H N+++YVKER L RLDLT SKD+ ++QLRG  R P HSISYN  
Sbjct: 316 MVIFKLERERPAYSLHGNLLFYVKERTLRRLDLTTSKDTGLLQLRGNARTPIHSISYNPA 375

Query: 61  EHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNH 120
           E S+LV TR A N +NS Y+LY +P E    ++  DGKRSTG++A+WVARNRFAVLDRNH
Sbjct: 376 EQSVLVVTR-AANLDNSIYELYSVPVEADCPQDGGDGKRSTGVTAIWVARNRFAVLDRNH 434

Query: 121 TILIKNLKNE 130
           TI+IKN KNE
Sbjct: 435 TIVIKNEKNE 444

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
UNIPROTKB|H9L3L2	1134	LOC100859596 "Uncharacterized	0.962	0.113	0.633	1.7e-40
UNIPROTKB|H9KZL3	1169	LOC100859596 "Uncharacterized	0.962	0.110	0.633	1.8e-40
ZFIN|ZDB-GENE-020905-2	1226	copa "coatomer protein complex	0.962	0.105	0.625	6.9e-40
UNIPROTKB|F1PU93	1214	COPA "Coatomer subunit alpha"	0.962	0.106	0.618	1.1e-39
UNIPROTKB|Q27954	1224	COPA "Coatomer subunit alpha"	0.962	0.105	0.618	1.1e-39
UNIPROTKB|P53621	1224	COPA "Coatomer subunit alpha"	0.962	0.105	0.618	1.1e-39
UNIPROTKB|F1RJX8	1224	COPA "Uncharacterized protein"	0.962	0.105	0.618	1.1e-39
MGI|MGI:1334462	1224	Copa "coatomer protein complex	0.962	0.105	0.618	1.1e-39
UNIPROTKB|G3V6T1	1224	Copa "Protein Copa" [Rattus no	0.962	0.105	0.618	1.1e-39
FB|FBgn0025725	1234	alphaCop "alpha-coatomer prote	0.947	0.102	0.630	2.2e-38

UNIPROTKB|H9L3L2 LOC100859596 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 442 (160.7 bits), Expect = 1.7e-40, P = 1.7e-40
 Identities = 83/131 (63%), Positives = 106/131 (80%)

Query:     1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
             M+VFK ERERPAY VH N++YYVK+RFL +LD  +SKD  VMQLR G + P  ++SYN  
Sbjct:   314 MIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPA 373

Query:    61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
             E+++L+ TR A+N ENSTYDLY IPK+ +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct:   374 ENAVLLCTR-ASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query:   120 HTILIKNLKNE 130
             H+ILIKNLKNE
Sbjct:   433 HSILIKNLKNE 443

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

UNIPROTKB|H9KZL3 LOC100859596 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 442 (160.7 bits), Expect = 1.8e-40, P = 1.8e-40
 Identities = 83/131 (63%), Positives = 106/131 (80%)

Query:     1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
             M+VFK ERERPAY VH N++YYVK+RFL +LD  +SKD  VMQLR G + P  ++SYN  
Sbjct:   314 MIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPA 373

Query:    61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
             E+++L+ TR A+N ENSTYDLY IPK+ +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct:   374 ENAVLLCTR-ASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query:   120 HTILIKNLKNE 130
             H+ILIKNLKNE
Sbjct:   433 HSILIKNLKNE 443

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0030157 "pancreatic juice secretion" evidence=IEA

ZFIN|ZDB-GENE-020905-2 copa "coatomer protein complex, subunit alpha" [Danio rerio (taxid:7955)]

 Score = 437 (158.9 bits), Expect = 6.9e-40, P = 6.9e-40
 Identities = 82/131 (62%), Positives = 106/131 (80%)

Query:     1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
             M+VFK ERERPAY V+ N++YYVK+RFL +LD  +SKD+ VMQLR G + P  S+SYN  
Sbjct:   315 MLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSGSKFPVFSMSYNPA 374

Query:    61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
             E+++L+ TR A N ENSTYDLY IP+E +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct:   375 ENAVLLCTR-ATNLENSTYDLYSIPRESDSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 433

Query:   120 HTILIKNLKNE 130
             H++LIKNLKNE
Sbjct:   434 HSLLIKNLKNE 444

GO:0030117 "membrane coat" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030903 "notochord development" evidence=IMP

UNIPROTKB|F1PU93 COPA "Coatomer subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 435 (158.2 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 81/131 (61%), Positives = 106/131 (80%)

Query:     1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
             M+VFK ERERPAY VH N+++YVK+RFL +LD  +SKD  VMQLR G + P  ++SYN  
Sbjct:   304 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPA 363

Query:    61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
             E+++L+ TR A+N ENSTYDLY IPK+ +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct:   364 ENAVLLCTR-ASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 422

Query:   120 HTILIKNLKNE 130
             H++LIKNLKNE
Sbjct:   423 HSLLIKNLKNE 433

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|Q27954 COPA "Coatomer subunit alpha" [Bos taurus (taxid:9913)]

 Score = 435 (158.2 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 81/131 (61%), Positives = 106/131 (80%)

Query:     1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
             M+VFK ERERPAY VH N+++YVK+RFL +LD  +SKD  VMQLR G + P  S+SYN  
Sbjct:   314 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFSMSYNPA 373

Query:    61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
             E+++L+ TR A+N ENSTYDLY IPK+ +++  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct:   374 ENAVLLCTR-ASNLENSTYDLYTIPKDADTQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query:   120 HTILIKNLKNE 130
             H++LIKNLKNE
Sbjct:   433 HSLLIKNLKNE 443

GO:0005515 "protein binding" evidence=IPI

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0030157 "pancreatic juice secretion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|P53621 COPA "Coatomer subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 435 (158.2 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 81/131 (61%), Positives = 106/131 (80%)

Query:     1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
             M+VFK ERERPAY VH N+++YVK+RFL +LD  +SKD  VMQLR G + P  ++SYN  
Sbjct:   314 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPA 373

Query:    61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
             E+++L+ TR A+N ENSTYDLY IPK+ +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct:   374 ENAVLLCTR-ASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query:   120 HTILIKNLKNE 130
             H++LIKNLKNE
Sbjct:   433 HSLLIKNLKNE 443

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS;IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030157 "pancreatic juice secretion" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

UNIPROTKB|F1RJX8 COPA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 435 (158.2 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 81/131 (61%), Positives = 106/131 (80%)

Query:     1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
             M+VFK ERERPAY VH N+++YVK+RFL +LD  +SKD  VMQLR G + P  ++SYN  
Sbjct:   314 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPA 373

Query:    61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
             E+++L+ TR A+N ENSTYDLY IPK+ +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct:   374 ENAVLLCTR-ASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query:   120 HTILIKNLKNE 130
             H++LIKNLKNE
Sbjct:   433 HSLLIKNLKNE 443

GO:0030157 "pancreatic juice secretion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

MGI|MGI:1334462 Copa "coatomer protein complex subunit alpha" [Mus musculus (taxid:10090)]

 Score = 435 (158.2 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 81/131 (61%), Positives = 106/131 (80%)

Query:     1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
             M+VFK ERERPAY VH N+++YVK+RFL +LD  +SKD  VMQLR G + P  ++SYN  
Sbjct:   314 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPA 373

Query:    61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
             E+++L+ TR A+N ENSTYDLY IPK+ +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct:   374 ENAVLLCTR-ASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query:   120 HTILIKNLKNE 130
             H++LIKNLKNE
Sbjct:   433 HSLLIKNLKNE 443

GO:0005179 "hormone activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0030157 "pancreatic juice secretion" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

UNIPROTKB|G3V6T1 Copa "Protein Copa" [Rattus norvegicus (taxid:10116)]

 Score = 435 (158.2 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 81/131 (61%), Positives = 106/131 (80%)

Query:     1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
             M+VFK ERERPAY VH N+++YVK+RFL +LD  +SKD  VMQLR G + P  ++SYN  
Sbjct:   314 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPA 373

Query:    61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
             E+++L+ TR A+N ENSTYDLY IPK+ +S+  +  +GKRS+G++AVWVARNRFAVLDR 
Sbjct:   374 ENAVLLCTR-ASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432

Query:   120 HTILIKNLKNE 130
             H++LIKNLKNE
Sbjct:   433 HSLLIKNLKNE 443

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0030157 "pancreatic juice secretion" evidence=IEA

FB|FBgn0025725 alphaCop "alpha-coatomer protein" [Drosophila melanogaster (taxid:7227)]

 Score = 423 (154.0 bits), Expect = 2.2e-38, P = 2.2e-38
 Identities = 82/130 (63%), Positives = 102/130 (78%)

Query:     1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
             MVVFK ERERPAY VH N++YYVKERFL +LD T +KD+VVMQLR G + P +S+SYN  
Sbjct:   317 MVVFKLERERPAYAVHGNILYYVKERFLRKLDFTTTKDTVVMQLRPG-KSPVYSMSYNPA 375

Query:    61 EHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNH 120
              +++L+ TR  NN ENSTYDL  IPK+   + E +D KRS+GI+A+WVARNRFAVLDRN 
Sbjct:   376 LNAVLICTRT-NNLENSTYDLCQIPKDTESQSE-SDSKRSSGITAIWVARNRFAVLDRNQ 433

Query:   121 TILIKNLKNE 130
              ++IKN KNE
Sbjct:   434 QLVIKNFKNE 443

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISS;NAS

GO:0030126 "COPI vesicle coat" evidence=ISS;NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0010883 "regulation of lipid storage" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CIE6	COPA_MOUSE	No assigned EC number	0.6183	0.9626	0.1053	yes	N/A
P53621	COPA_HUMAN	No assigned EC number	0.6183	0.9626	0.1053	yes	N/A
Q27954	COPA_BOVIN	No assigned EC number	0.6183	0.9626	0.1053	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
pfam04053	429	pfam04053, Coatomer_WDAD, Coatomer WD associated r	6e-14

>gnl|CDD|217864 pfam04053, Coatomer_WDAD, Coatomer WD associated region

 Score = 66.5 bits (163), Expect = 6e-14
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 17/96 (17%)

Query: 38  DSVVMQLRGGG--RIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA 95
           + + + L+  G   +   S+S+N     +LV         +  Y +Y             
Sbjct: 17  ELLPLSLKELGSTEVYPQSLSHNPNGRFVLV-------CGDGEYIIYTAL-------AWR 62

Query: 96  DGKRSTGISAVWVARNRFAVLDRNHTILI-KNLKNE 130
           +    +G+  VWV+RNR+AVL+++ T+ I KN K  
Sbjct: 63  NKAFGSGLDFVWVSRNRYAVLEKSGTVKIFKNFKES 98

This region is composed of WD40 repeats. Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
KOG0292|consensus	1202		100.0
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	99.6
KOG0276|consensus	794		96.55
KOG0772|consensus	641		91.04
KOG0643|consensus	327		90.04
PRK05137	435	tolB translocation protein TolB; Provisional	85.42
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	83.58
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	83.29
KOG1446|consensus	311		80.32
PRK01742	429	tolB translocation protein TolB; Provisional	80.03

>KOG0292|consensus

Probab=100.00  E-value=5.8e-44  Score=323.83  Aligned_cols=129  Identities=47%  Similarity=0.801  Sum_probs=124.6

Q ss_pred             CEEEEecCCCCcceeeCCEEEEEeCCeEEEEECCCCCceeeEEee--cCCCCCceEEEeccCCCeEEEEeccCCCCCCce
Q psy74             1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLR--GGGRIPAHSISYNATEHSILVTTRNANNFENST   78 (134)
Q Consensus         1 miVFKLeRERPa~~~~~n~L~Yvkek~l~~~D~~t~~~~~~~slr--g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~   78 (134)
                      ||||||||||||+++|+|.|||||||+||.|||.|.+|+++++||  |+.|.|||+|||||+|++||+|+.    .|||.
T Consensus       315 m~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~----~~n~~  390 (1202)
T KOG0292|consen  315 MIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSN----LDNGE  390 (1202)
T ss_pred             eEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEec----cCCCe
Confidence            899999999999999999999999999999999999999999999  779999999999999999999976    89999


Q ss_pred             EEEEEccCCCcccccccCCccccceeEEEEeCCeEEEEec-CCEEEEEeCCCceEe
Q psy74            79 YDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDR-NHTILIKNLKNEFCT  133 (134)
Q Consensus        79 yeL~~lpk~~~~~~~~~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~n~~~K  133 (134)
                      ||||.+|+++++..+..+.++|+|.+|+|||||||||||| +++++||||+|+++|
T Consensus       391 y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtk  446 (1202)
T KOG0292|consen  391 YELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTK  446 (1202)
T ss_pred             EEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhh
Confidence            9999999998877777899999999999999999999999 999999999999987

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.60  E-value=1e-15  Score=132.69  Aligned_cols=95  Identities=31%  Similarity=0.500  Sum_probs=65.4

Q ss_pred             CCeEEEEECCCC-----CceeeEEee--cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccCC
Q psy74            25 ERFLHRLDLTNS-----KDSVVMQLR--GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADG   97 (134)
Q Consensus        25 ek~l~~~D~~t~-----~~~~~~slr--g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~~   97 (134)
                      +++|+.+|+.+.     .+.+.+++|  |+.+..|++|||||+++.|+|+       ++|.|++|+-.       ...+.
T Consensus         1 ~~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~-------g~geY~iyt~~-------~~r~k   66 (443)
T PF04053_consen    1 HNEIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVC-------GDGEYEIYTAL-------AWRNK   66 (443)
T ss_dssp             -TEEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSSEEEEE-------ETTEEEEEETT-------TTEEE
T ss_pred             CCceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEE-------cCCEEEEEEcc-------CCccc
Confidence            478999999997     677888999  8899999999999999999997       45799999811       12347


Q ss_pred             ccccceeEEEEeCCeEEEEecCCEEEE-EeCCCceEe
Q psy74            98 KRSTGISAVWVARNRFAVLDRNHTILI-KNLKNEFCT  133 (134)
Q Consensus        98 ~~g~g~~AvFVaRNRfAvldk~~~i~I-knl~n~~~K  133 (134)
                      ..|+|.+++|++||||||++++++|.| ||++++.+|
T Consensus        67 ~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   67 AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             ccCceeEEEEecCccEEEEECCCeEEEEEcCccccce
Confidence            789999999999999999999999999 999887754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0276|consensus

Probab=96.55  E-value=0.023  Score=52.35  Aligned_cols=113  Identities=23%  Similarity=0.428  Sum_probs=87.1

Q ss_pred             CEEEEecCCCCcceeeCC-EEEEEeCCeEEEEECCC-CCc-----eee--EEee--cCCCCCceEEEeccCCCeEEEEec
Q psy74             1 MVVFKFERERPAYTVHNN-VMYYVKERFLHRLDLTN-SKD-----SVV--MQLR--GGGRIPAHSISYNATEHSILVTTR   69 (134)
Q Consensus         1 miVFKLeRERPa~~~~~n-~L~Yvkek~l~~~D~~t-~~~-----~~~--~slr--g~~~~~~~slsyNpae~~vLv~~~   69 (134)
                      .|++||=||-|+..+..+ .++|-+-+.++.-++.+ +.+     ..-  +++|  |+.-.-|.+|-.||.-+.|.||  
T Consensus       292 ~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vc--  369 (794)
T KOG0276|consen  292 SVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVC--  369 (794)
T ss_pred             cEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEe--
Confidence            378999999999999766 49999999999999987 333     223  3445  7777788999999999999999  


Q ss_pred             cCCCCCCceEEEEE-ccCCCcccccccCCccccceeEEEEeC-CeEEEEecCCEEEE-EeCC
Q psy74            70 NANNFENSTYDLYM-IPKEESERKEVADGKRSTGISAVWVAR-NRFAVLDRNHTILI-KNLK  128 (134)
Q Consensus        70 ~~~~~d~g~yeL~~-lpk~~~~~~~~~~~~~g~g~~AvFVaR-NRfAvldk~~~i~I-knl~  128 (134)
                           ..|-|-+|+ +.-        -...-|+|.-=+|.+- |-|||-+.++.|.| ||++
T Consensus       370 -----gdGEyiIyTala~--------RnK~fG~~~eFvw~~dsne~avRes~~~vki~knfk  418 (794)
T KOG0276|consen  370 -----GDGEYIIYTALAL--------RNKAFGSGLEFVWAADSNEFAVRESNGNVKIFKNFK  418 (794)
T ss_pred             -----cCccEEEEEeeeh--------hhcccccceeEEEcCCCCeEEEEecCCceEEEecce
Confidence                 446899997 221        1234567888999998 99999998666555 4543

>KOG0772|consensus

Probab=91.04  E-value=1.4  Score=40.17  Aligned_cols=107  Identities=17%  Similarity=0.218  Sum_probs=71.8

Q ss_pred             eCCeEEEEECCC-CCceee-EEeecCCCCCceEEEeccCCCeEEEEeccCCCC--CCceEEEEEccCCCc--ccccccCC
Q psy74            24 KERFLHRLDLTN-SKDSVV-MQLRGGGRIPAHSISYNATEHSILVTTRNANNF--ENSTYDLYMIPKEES--ERKEVADG   97 (134)
Q Consensus        24 kek~l~~~D~~t-~~~~~~-~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~--d~g~yeL~~lpk~~~--~~~~~~~~   97 (134)
                      .|-.+++|||+. ....+. -+|-+.--.+.++|.|.|+-.+|||.++.+...  |---+++..+.|..-  .+-..+-+
T Consensus       187 ~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKG  266 (641)
T KOG0772|consen  187 LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKG  266 (641)
T ss_pred             ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCC
Confidence            677899999996 333322 222233444789999999999999998742111  333478887777644  22222334


Q ss_pred             ccccceeEEEEeCCeEEEEec--CCEEEEEeCCCc
Q psy74            98 KRSTGISAVWVARNRFAVLDR--NHTILIKNLKNE  130 (134)
Q Consensus        98 ~~g~g~~AvFVaRNRfAvldk--~~~i~Iknl~n~  130 (134)
                      +-..-++++|=-+||=-+|.-  .+++.|=+++|-
T Consensus       267 Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~  301 (641)
T KOG0772|consen  267 HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT  301 (641)
T ss_pred             ceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence            444556789999888888775  789999998764

>KOG0643|consensus

Probab=90.04  E-value=6.5  Score=33.42  Aligned_cols=120  Identities=16%  Similarity=0.254  Sum_probs=78.0

Q ss_pred             EEecCCCC-cceeeCCEEEEE---e----------CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEec
Q psy74             4 FKFERERP-AYTVHNNVMYYV---K----------ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTR   69 (134)
Q Consensus         4 FKLeRERP-a~~~~~n~L~Yv---k----------ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~   69 (134)
                      |.|.-||- .|.=|.+.+|++   +          |.-++.||..+++....... |   .+.+.+.+++..+-+|++++
T Consensus        38 ~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~---~~Vk~~~F~~~gn~~l~~tD  113 (327)
T KOG0643|consen   38 YSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-N---SPVKRVDFSFGGNLILASTD  113 (327)
T ss_pred             EecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-C---CeeEEEeeccCCcEEEEEeh
Confidence            44455554 234455666665   1          34457788888766443332 2   26899999999999999877


Q ss_pred             cCCCC-CCceEEEEEccCCCccc--ccc---cCCccccceeEEEEeCCeEEEEec-CCEEEEEeCCC
Q psy74            70 NANNF-ENSTYDLYMIPKEESER--KEV---ADGKRSTGISAVWVARNRFAVLDR-NHTILIKNLKN  129 (134)
Q Consensus        70 ~~~~~-d~g~yeL~~lpk~~~~~--~~~---~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~n  129 (134)
                      .  .. -.|.-.++.++.+++..  .++   -....+....|+|=+-+.|.+--- ++.|.+.++.+
T Consensus       114 ~--~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~  178 (327)
T KOG0643|consen  114 K--QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDART  178 (327)
T ss_pred             h--hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence            2  22 33556666677664311  110   012235688999999999999876 89999999975

>PRK05137 tolB translocation protein TolB; Provisional

Probab=85.42  E-value=22  Score=30.25  Aligned_cols=67  Identities=13%  Similarity=0.327  Sum_probs=44.3

Q ss_pred             CcceeeCCEEEEEe----CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccC
Q psy74            11 PAYTVHNNVMYYVK----ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK   86 (134)
Q Consensus        11 Pa~~~~~n~L~Yvk----ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk   86 (134)
                      |+|.-.++.|.|+.    +.+|+.+|+.++....+....|    ......+.|....++++..     .+|..+||.+.-
T Consensus       207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g----~~~~~~~SPDG~~la~~~~-----~~g~~~Iy~~d~  277 (435)
T PRK05137        207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG----MTFAPRFSPDGRKVVMSLS-----QGGNTDIYTMDL  277 (435)
T ss_pred             eEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC----cccCcEECCCCCEEEEEEe-----cCCCceEEEEEC
Confidence            56666788999983    3589999998865554444433    2235577887777766544     344677776653

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=83.58  E-value=12  Score=30.50  Aligned_cols=106  Identities=17%  Similarity=0.161  Sum_probs=63.0

Q ss_pred             CCCcceeeCCEEEEEeC--CeEEEEECCCCCceeeEEeecC--------CCCCceEEEeccCCCeEEEEeccCCCCCCce
Q psy74             9 ERPAYTVHNNVMYYVKE--RFLHRLDLTNSKDSVVMQLRGG--------GRIPAHSISYNATEHSILVTTRNANNFENST   78 (134)
Q Consensus         9 ERPa~~~~~n~L~Yvke--k~l~~~D~~t~~~~~~~slrg~--------~~~~~~slsyNpae~~vLv~~~~~~~~d~g~   78 (134)
                      +-+...++++.|||-+.  +.|..|||.+++...-+.|.+.        .|.+...+-+--.|+.+-|.|..  ..++|.
T Consensus        70 ~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat--~~~~g~  147 (250)
T PF02191_consen   70 QGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYAT--EDNNGN  147 (250)
T ss_pred             ccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEec--CCCCCc
Confidence            44677889999999865  8999999999776655566522        22234445666778888888872  234444


Q ss_pred             EEEEEccCCCccccc---ccCCccccceeEEEEeCCeEEEEec
Q psy74            79 YDLYMIPKEESERKE---VADGKRSTGISAVWVARNRFAVLDR  118 (134)
Q Consensus        79 yeL~~lpk~~~~~~~---~~~~~~g~g~~AvFVaRNRfAvldk  118 (134)
                      .-+-.|=.. +-.++   .+. -.....+.+|++-=-+=+++.
T Consensus       148 ivvskld~~-tL~v~~tw~T~-~~k~~~~naFmvCGvLY~~~s  188 (250)
T PF02191_consen  148 IVVSKLDPE-TLSVEQTWNTS-YPKRSAGNAFMVCGVLYATDS  188 (250)
T ss_pred             EEEEeeCcc-cCceEEEEEec-cCchhhcceeeEeeEEEEEEE
Confidence            444333211 11111   111 122345567777776666665

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=83.29  E-value=5  Score=32.72  Aligned_cols=42  Identities=12%  Similarity=0.152  Sum_probs=30.3

Q ss_pred             CCeEEEEECCCCCceeeEEee-cCCCCCceEEEeccCCCeEEEE
Q psy74            25 ERFLHRLDLTNSKDSVVMQLR-GGGRIPAHSISYNATEHSILVT   67 (134)
Q Consensus        25 ek~l~~~D~~t~~~~~~~slr-g~~~~~~~slsyNpae~~vLv~   67 (134)
                      ++.-++||+.+++.. ...|. .+......+|+|||.|+.+-++
T Consensus       194 ~~I~yafDt~t~~~~-~~~i~f~~~~~~~~~l~YNP~dk~LY~w  236 (250)
T PF02191_consen  194 TEIFYAFDTYTGKEE-DVSIPFPNPYGNISMLSYNPRDKKLYAW  236 (250)
T ss_pred             cEEEEEEECCCCcee-ceeeeeccccCceEeeeECCCCCeEEEE
Confidence            345689999985544 23344 4455567899999999998887

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG1446|consensus

Probab=80.32  E-value=36  Score=29.07  Aligned_cols=112  Identities=17%  Similarity=0.262  Sum_probs=68.6

Q ss_pred             CCCcceeeCCEEEEE---eCCeEEEEECCCCCceeeEEee-c-CCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEE
Q psy74             9 ERPAYTVHNNVMYYV---KERFLHRLDLTNSKDSVVMQLR-G-GGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYM   83 (134)
Q Consensus         9 ERPa~~~~~n~L~Yv---kek~l~~~D~~t~~~~~~~slr-g-~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~   83 (134)
                      -||..|....-|++.   ....|+.||+..-...|.-... + +....-..|.|.|--..+||++.     .+-.|-|-.
T Consensus       142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-----~s~~~~lDA  216 (311)
T KOG1446|consen  142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-----ASFIYLLDA  216 (311)
T ss_pred             CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-----CCcEEEEEc
Confidence            466666666556664   3447888888774445555555 3 23334466888898999999855     222333322


Q ss_pred             ccCCCcccccccCCccccc---eeEEEEeCCeEEEEec-CCEEEEEeCC
Q psy74            84 IPKEESERKEVADGKRSTG---ISAVWVARNRFAVLDR-NHTILIKNLK  128 (134)
Q Consensus        84 lpk~~~~~~~~~~~~~g~g---~~AvFVaRNRfAvldk-~~~i~Iknl~  128 (134)
                      +....-+.-   +.....+   .+|+|.==-+|++--. +++|.|.|++
T Consensus       217 f~G~~~~tf---s~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  217 FDGTVKSTF---SGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             cCCcEeeeE---eeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence            222211111   1111222   7899999999998888 7999999995

>PRK01742 tolB translocation protein TolB; Provisional

Probab=80.03  E-value=35  Score=29.05  Aligned_cols=66  Identities=20%  Similarity=0.376  Sum_probs=43.5

Q ss_pred             CcceeeCCEEEEE-eC---CeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74            11 PAYTVHNNVMYYV-KE---RFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP   85 (134)
Q Consensus        11 Pa~~~~~n~L~Yv-ke---k~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp   85 (134)
                      |++.-.++.|.|+ .+   .+|+.+|+.++....+..++|.    .....+.|...-++++..     .+|..+|+.+.
T Consensus       209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~----~~~~~wSPDG~~La~~~~-----~~g~~~Iy~~d  278 (429)
T PRK01742        209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH----NGAPAFSPDGSRLAFASS-----KDGVLNIYVMG  278 (429)
T ss_pred             ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc----cCceeECCCCCEEEEEEe-----cCCcEEEEEEE
Confidence            6777788899998 32   3799999988655455445442    124678887776766543     33456777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-05

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 29/145 (20%)

Query: 1   MVVFKFERERPAYTVH-NNVMYYVKERFLH---------RLDLTNSKDSVVMQLR---GG 47
             V     + P  ++     + +   +            R +    +D  +       G 
Sbjct: 295 FTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS 354

Query: 48  GRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVW 107
             +   S++++     + V         +  Y +Y             +         VW
Sbjct: 355 VDVFPQSLAHSPNGRFVTVVG-------DGEYVIYTALAWR-------NKAFGKCQDFVW 400

Query: 108 -VARNRFAVLDRNHTIL-IKNLKNE 130
               N +A++D    I   KN K  
Sbjct: 401 GPDSNSYALIDETGQIKYYKNFKEV 425

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	94.92
3jrp_A	379	Fusion protein of protein transport protein SEC13	94.54
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	94.33
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	93.85
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.75
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.37
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	93.36
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	93.22
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	93.21
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.14
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	93.08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.71
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	92.63
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	92.35
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	92.32
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	91.8
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	91.7
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	91.7
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	91.67
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	91.64
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	90.58
3jro_A	753	Fusion protein of protein transport protein SEC13	90.4
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	90.04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	90.03
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	90.03
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	89.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	89.87
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	89.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.19
3jro_A	753	Fusion protein of protein transport protein SEC13	88.99
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	88.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	88.87
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	88.78
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	88.74
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	88.3
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	87.88
2pm7_B	297	Protein transport protein SEC13, protein transport	87.7
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	86.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	86.5
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	86.26
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	86.18
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	85.62
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	85.05
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	84.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	84.76
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	84.55
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	84.09
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	84.03
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	83.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	83.73
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	83.69
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	83.61
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	83.41
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	83.05
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	83.03
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	82.83
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	82.7
2pm7_B	297	Protein transport protein SEC13, protein transport	82.25
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	82.17
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	81.57
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	81.43
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	81.31
3ow8_A	321	WD repeat-containing protein 61; structural genomi	81.26
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	80.93
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	80.81
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	80.66
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	80.57

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=94.92  E-value=0.66  Score=34.06  Aligned_cols=108  Identities=14%  Similarity=0.084  Sum_probs=64.0

Q ss_pred             eCCEEEEEeCCeEEEEECCCC-CceeeEEee-cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc
Q psy74            16 HNNVMYYVKERFLHRLDLTNS-KDSVVMQLR-GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE   93 (134)
Q Consensus        16 ~~n~L~Yvkek~l~~~D~~t~-~~~~~~slr-g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~   93 (134)
                      .+..|+...+..|+.||+.+. ...++..+. ...-.+...+.++|....+++.+      .+|...++.+.........
T Consensus        62 ~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~  135 (337)
T 1gxr_A           62 PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG------EASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE------SSSEEEEEECCCC--EEEE
T ss_pred             CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc------CCCcEEEEECCCCCcceee
Confidence            345566668999999999984 444555555 23445788999999877666653      3456666655433210000


Q ss_pred             ccCCccccceeEEEEeCC-eEEEEecCCEEEEEeCCC
Q psy74            94 VADGKRSTGISAVWVARN-RFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVaRN-RfAvldk~~~i~Iknl~n  129 (134)
                      ......+...+..|-..+ .+++-..+++|.|-|++.
T Consensus       136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~  172 (337)
T 1gxr_A          136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence            111223334445555443 456666688899999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=94.54  E-value=1  Score=33.61  Aligned_cols=105  Identities=10%  Similarity=0.114  Sum_probs=64.1

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccC--CCeEEEEeccCCCCCCceEEEEEccCCCccccc
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT--EHSILVTTRNANNFENSTYDLYMIPKEESERKE   93 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpa--e~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~   93 (134)
                      ++.|+-. .|..|+.||+.+..-..+..+.+ .-.+...+.++|.  ...+++.+      .+|...++.+.........
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~  141 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVAS------SDGKVSVVEFKENGTTSPI  141 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEE------TTSEEEEEECCTTSCCCEE
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCCEEEEec------CCCcEEEEecCCCCceeeE
Confidence            4445555 88999999999866555555553 2336889999998  45444442      3456666665543221111


Q ss_pred             ccCCccccceeEEEEe--------------CCeEEEEecCCEEEEEeCC
Q psy74            94 VADGKRSTGISAVWVA--------------RNRFAVLDRNHTILIKNLK  128 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVa--------------RNRfAvldk~~~i~Iknl~  128 (134)
                      ......+...+..|-.              .+.+|+-..+++|.|.++.
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  190 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN  190 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEE
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEec
Confidence            1123333445566655              4667777778899998885

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=94.33  E-value=1.3  Score=33.82  Aligned_cols=108  Identities=11%  Similarity=-0.024  Sum_probs=63.4

Q ss_pred             CEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccC
Q psy74            18 NVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVAD   96 (134)
Q Consensus        18 n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~   96 (134)
                      +.|+-. .+..|+.||+.+......+.+.| .-.+...+.++|.+...|++..     ..|...++.+............
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~  160 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMG-PGDAITGMKFNQFNTNQLFVSS-----IRGATTLRDFSGSVIQVFAKTD  160 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTSTTCEEEECCCS-TTCBEEEEEEETTEEEEEEEEE-----TTTEEEEEETTSCEEEEEECCC
T ss_pred             CEEEEEcCCCeEEEEeCCCcccceeeecCC-cCCceeEEEeCCCCCCEEEEEe-----CCCEEEEEECCCCceEEEeccC
Confidence            344444 88999999999876655555432 3336789999996666666544     3356666665532111111111


Q ss_pred             CccccceeEEEEeCC-eEEEEecCCEEEEEeCCCce
Q psy74            97 GKRSTGISAVWVARN-RFAVLDRNHTILIKNLKNEF  131 (134)
Q Consensus        97 ~~~g~g~~AvFVaRN-RfAvldk~~~i~Iknl~n~~  131 (134)
                      ...+...+..|-... .+|+-..+++|.|-|++++.
T Consensus       161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  196 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE  196 (383)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE
T ss_pred             CCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE
Confidence            222334445555443 45555558899999986543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.96  E-value=1.1  Score=34.86  Aligned_cols=105  Identities=7%  Similarity=0.140  Sum_probs=66.6

Q ss_pred             CCEEEEE----eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccc
Q psy74            17 NNVMYYV----KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERK   92 (134)
Q Consensus        17 ~n~L~Yv----kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~   92 (134)
                      +..|+..    .++.|+.||+.+.+-  +..+..  -.+...+.++|....++++.+    .+.|...++.++.......
T Consensus       271 ~~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~~~--~~~v~~~~~s~~~~~l~~~~g----~~dg~i~v~~~~~~~~~~~  342 (401)
T 4aez_A          271 QSNLLATGGGTMDKQIHFWNAATGAR--VNTVDA--GSQVTSLIWSPHSKEIMSTHG----FPDNNLSIWSYSSSGLTKQ  342 (401)
T ss_dssp             STTEEEEECCTTTCEEEEEETTTCCE--EEEEEC--SSCEEEEEECSSSSEEEEEEC----TTTCEEEEEEEETTEEEEE
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCCE--EEEEeC--CCcEEEEEECCCCCeEEEEee----cCCCcEEEEecCCccceeE
Confidence            4456665    489999999987543  334441  125789999999988888755    4566788887765321110


Q ss_pred             cccCCccccceeEEEEeCCeE-EEEecCCEEEEEeCCC
Q psy74            93 EVADGKRSTGISAVWVARNRF-AVLDRNHTILIKNLKN  129 (134)
Q Consensus        93 ~~~~~~~g~g~~AvFVaRNRf-Avldk~~~i~Iknl~n  129 (134)
                      -.-....+...+..|-...++ |+-..+++|.|-++.+
T Consensus       343 ~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          343 VDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             EEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             EEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            011233444555667655554 4444589999999963

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=93.85  E-value=1.3  Score=32.10  Aligned_cols=108  Identities=8%  Similarity=0.108  Sum_probs=64.9

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCc--eeeEEeecCCCCCceEEEeccC-CCeEEEEeccCCCCCCceEEEEEccCCCc-c
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKD--SVVMQLRGGGRIPAHSISYNAT-EHSILVTTRNANNFENSTYDLYMIPKEES-E   90 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~--~~~~slrg~~~~~~~slsyNpa-e~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~   90 (134)
                      .++.|.-. .+..|+.||+.+...  ..+..+++ .-.+...|.++|. +...|++..     ..|...++.+..... .
T Consensus        22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~-----~dg~v~vwd~~~~~~~~   95 (351)
T 3f3f_A           22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGRIIASAS-----YDKTVKLWEEDPDQEEC   95 (351)
T ss_dssp             SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEE-----TTSCEEEEEECTTSCTT
T ss_pred             CCCEEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCCEEEEEc-----CCCeEEEEecCCCcccc
Confidence            45556665 789999999997433  34444443 3346899999997 344555433     335666666544321 0


Q ss_pred             -----c-ccccCCccccceeEEEEe---CCeEEEEecCCEEEEEeCCC
Q psy74            91 -----R-KEVADGKRSTGISAVWVA---RNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        91 -----~-~~~~~~~~g~g~~AvFVa---RNRfAvldk~~~i~Iknl~n  129 (134)
                           . ...-....+...+..|-.   .+.+|+-..+++|.|-|+..
T Consensus        96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  143 (351)
T 3f3f_A           96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE  143 (351)
T ss_dssp             SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred             cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence                 0 111123344455566665   34577777799999999853

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.75  E-value=1.6  Score=32.68  Aligned_cols=119  Identities=13%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             EEEecCCCCccee----eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCc
Q psy74             3 VFKFERERPAYTV----HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENS   77 (134)
Q Consensus         3 VFKLeRERPa~~~----~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g   77 (134)
                      +|++..+ |-.++    .++.|+.. .++.|+.||+.+..-..+..+.+ .-.+...|.++|....++..+      ..|
T Consensus         3 ~~~~~~~-~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~------~dg   74 (372)
T 1k8k_C            3 YHSFLVE-PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCG------TDR   74 (372)
T ss_dssp             EEESCSS-CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEE------TTS
T ss_pred             eecccCC-CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEc------CCC
Confidence            5676544 33332    45667777 89999999998765335555553 233688999999766655543      334


Q ss_pred             eEEEEEccCCCcccccccCCccccceeEEEEe-CCeEEEEecCCEEEEEeCCC
Q psy74            78 TYDLYMIPKEESERKEVADGKRSTGISAVWVA-RNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        78 ~yeL~~lpk~~~~~~~~~~~~~g~g~~AvFVa-RNRfAvldk~~~i~Iknl~n  129 (134)
                      ...++.+........-......+...+..|-. .+.+|+-..+++|.|.+++.
T Consensus        75 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~  127 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ  127 (372)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred             eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence            56666553321000000112233344444543 34566666688888887753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.37  E-value=1.8  Score=32.20  Aligned_cols=109  Identities=9%  Similarity=0.166  Sum_probs=64.4

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCC-CeEEEEeccCCCCCCceEEEEEccCCCccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATE-HSILVTTRNANNFENSTYDLYMIPKEESERKE   93 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae-~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~   93 (134)
                      .++.|.-. .+..|+.||+.......+..+++ ...+...|.++|.. ...|++..     .+|...++.+.........
T Consensus        22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~   95 (379)
T 3jrp_A           22 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCS-----YDGKVLIWKEENGRWSQIA   95 (379)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEE-----TTSCEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEECCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEec-----cCCEEEEEEcCCCceeEee
Confidence            45666666 79999999998655556666664 23467899998662 34444433     3345666655433100111


Q ss_pred             ccCCccccceeEEEEe---CCeEEEEecCCEEEEEeCCCc
Q psy74            94 VADGKRSTGISAVWVA---RNRFAVLDRNHTILIKNLKNE  130 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVa---RNRfAvldk~~~i~Iknl~n~  130 (134)
                      ......+...+..|-.   .+.+++-..+++|.|.++...
T Consensus        96 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           96 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            1122333344445543   346777777899999998643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=93.36  E-value=1.7  Score=32.12  Aligned_cols=104  Identities=11%  Similarity=0.121  Sum_probs=59.0

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEecc---CCCeEEEEeccCCCCCCceEEEEEccCCCc-c
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNA---TEHSILVTTRNANNFENSTYDLYMIPKEES-E   90 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNp---ae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~   90 (134)
                      .++.|+.. .++.|+.||+.+........    .-.+..++.++|   ....+++. .     .+|...++.+..... .
T Consensus       179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~l~~~-~-----~dg~i~i~d~~~~~~~~  248 (357)
T 3i2n_A          179 EERVVCAGYDNGDIKLFDLRNMALRWETN----IKNGVCSLEFDRKDISMNKLVAT-S-----LEGKFHVFDMRTQHPTK  248 (357)
T ss_dssp             CCCEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEESCSSSSCCEEEEE-E-----STTEEEEEEEEEEETTT
T ss_pred             CCCEEEEEccCCeEEEEECccCceeeecC----CCCceEEEEcCCCCCCCCEEEEE-C-----CCCeEEEEeCcCCCccc
Confidence            44555555 77999999999855322211    122678999999   45555544 3     334666665443211 1


Q ss_pred             ccc--ccCCccccceeEEEEeCCe--EEEEecCCEEEEEeCCC
Q psy74            91 RKE--VADGKRSTGISAVWVARNR--FAVLDRNHTILIKNLKN  129 (134)
Q Consensus        91 ~~~--~~~~~~g~g~~AvFVaRNR--fAvldk~~~i~Iknl~n  129 (134)
                      ...  ......+...+..|-...+  +|.-..+++|.|-+++.
T Consensus       249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            000  0013344445556665454  66666688999999853

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=93.22  E-value=1.4  Score=34.87  Aligned_cols=107  Identities=10%  Similarity=0.002  Sum_probs=62.7

Q ss_pred             CEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccC
Q psy74            18 NVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVAD   96 (134)
Q Consensus        18 n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~   96 (134)
                      +.|.-- .|..|+.||+.+.....++.+.| .-.+...|.|+|.+...|++..    .| |+.-+..+...........+
T Consensus       133 ~~lasGs~dg~i~lWd~~~~~~~~~~~~~g-H~~~V~~l~f~p~~~~~l~s~s----~D-~~v~iwd~~~~~~~~~~~~~  206 (435)
T 4e54_B          133 STVAVGSKGGDIMLWNFGIKDKPTFIKGIG-AGGSITGLKFNPLNTNQFYASS----ME-GTTRLQDFKGNILRVFASSD  206 (435)
T ss_dssp             TCEEEEETTSCEEEECSSCCSCCEEECCCS-SSCCCCEEEECSSCTTEEEEEC----SS-SCEEEEETTSCEEEEEECCS
T ss_pred             CEEEEEeCCCEEEEEECCCCCceeEEEccC-CCCCEEEEEEeCCCCCEEEEEe----CC-CEEEEeeccCCceeEEeccC
Confidence            334433 89999999999876666666654 2336789999998877777644    34 46666554322110000111


Q ss_pred             CccccceeEEEEeCC-eEEEEecCCEEEEEeCCCc
Q psy74            97 GKRSTGISAVWVARN-RFAVLDRNHTILIKNLKNE  130 (134)
Q Consensus        97 ~~~g~g~~AvFVaRN-RfAvldk~~~i~Iknl~n~  130 (134)
                      .......+..|-.-. .+|+-+.+++|.|-|++++
T Consensus       207 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~  241 (435)
T 4e54_B          207 TINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK  241 (435)
T ss_dssp             SCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC
T ss_pred             CCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc
Confidence            122223334444333 4555556888999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=93.21  E-value=1  Score=35.69  Aligned_cols=106  Identities=13%  Similarity=0.211  Sum_probs=66.8

Q ss_pred             CCEEEEE--eCCeEEEEECCCC-CceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc
Q psy74            17 NNVMYYV--KERFLHRLDLTNS-KDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE   93 (134)
Q Consensus        17 ~n~L~Yv--kek~l~~~D~~t~-~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~   93 (134)
                      ++.++.+  .+..|+.||+.+. ...++..+++ .-.+++.|+++|....+|++..     ..|...++.+..... ...
T Consensus       243 ~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~-----~dg~v~vwd~~~~~~-~~~  315 (430)
T 2xyi_A          243 HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-HTAEVNCLSFNPYSEFILATGS-----ADKTVALWDLRNLKL-KLH  315 (430)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-CSSCEEEEEECSSCTTEEEEEE-----TTSEEEEEETTCTTS-CSE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCCCcceeEeec-CCCCeEEEEeCCCCCCEEEEEe-----CCCeEEEEeCCCCCC-CeE
Confidence            4446655  7999999999984 3456666662 2236899999998876666544     456777877654221 011


Q ss_pred             ccCCccccceeEEEEeCCe--EEEEecCCEEEEEeCCC
Q psy74            94 VADGKRSTGISAVWVARNR--FAVLDRNHTILIKNLKN  129 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVaRNR--fAvldk~~~i~Iknl~n  129 (134)
                      .-....+...+..|-..++  +|.-..+++|.|-++..
T Consensus       316 ~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            1123344455566655443  56665688899998864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.14  E-value=2.4  Score=32.96  Aligned_cols=102  Identities=15%  Similarity=0.159  Sum_probs=66.5

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      .++.++-+ .++.|+.||+.+..-...+...  .-.+...+.++|....+++.+      .+|...++.+.....  ...
T Consensus       102 s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~------~dg~i~iwd~~~~~~--~~~  171 (401)
T 4aez_A          102 SNLNVVAVALERNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSFLSVGL------GNGLVDIYDVESQTK--LRT  171 (401)
T ss_dssp             CTTSEEEEEETTEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSEEEEEE------TTSCEEEEETTTCCE--EEE
T ss_pred             cCCCEEEEECCCeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCEEEEEC------CCCeEEEEECcCCeE--EEE
Confidence            44555555 9999999999986654444432  333688999999776655543      345677776543321  111


Q ss_pred             cCCccccceeEEEEeCCeEEEEecCCEEEEEeCC
Q psy74            95 ADGKRSTGISAVWVARNRFAVLDRNHTILIKNLK  128 (134)
Q Consensus        95 ~~~~~g~g~~AvFVaRNRfAvldk~~~i~Iknl~  128 (134)
                      -....+...+..| ..+.+++-..+++|.|.++.
T Consensus       172 ~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~  204 (401)
T 4aez_A          172 MAGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVR  204 (401)
T ss_dssp             ECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETT
T ss_pred             ecCCCCceEEEEE-CCCEEEEEcCCCCEEEEecc
Confidence            1233444445555 78888888889999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=93.08  E-value=1.8  Score=31.35  Aligned_cols=101  Identities=10%  Similarity=0.051  Sum_probs=62.3

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc-
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE-   93 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~-   93 (134)
                      .++.|+-. .+..|+.||+.+......+..   ...+...+.++|....++..+      .+|...++.+.....+... 
T Consensus        28 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~------~dg~i~~~~~~~~~~~~~~~   98 (313)
T 3odt_A           28 DDSKVASVSRDGTVRLWSKDDQWLGTVVYT---GQGFLNSVCYDSEKELLLFGG------KDTMINGVPLFATSGEDPLY   98 (313)
T ss_dssp             ETTEEEEEETTSEEEEEEESSSEEEEEEEE---CSSCEEEEEEETTTTEEEEEE------TTSCEEEEETTCCTTSCC-C
T ss_pred             CCCEEEEEEcCCcEEEEECCCCEEEEEeec---CCccEEEEEECCCCCEEEEec------CCCeEEEEEeeecCCCCccc
Confidence            45555555 889999999976443322222   233678999999877666653      3356666665544322211 


Q ss_pred             ccCCccccceeEEEEeCCeEEEEecCCEEEEEe
Q psy74            94 VADGKRSTGISAVWVARNRFAVLDRNHTILIKN  126 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVaRNRfAvldk~~~i~Ikn  126 (134)
                      .-....+...+..| ..+.+++-..+++|.|-|
T Consensus        99 ~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d  130 (313)
T 3odt_A           99 TLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK  130 (313)
T ss_dssp             EECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE
T ss_pred             chhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc
Confidence            12234444445555 788888888888998887

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.71  E-value=0.61  Score=39.43  Aligned_cols=64  Identities=16%  Similarity=0.205  Sum_probs=41.7

Q ss_pred             CCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccCCccccceeEEEE-eCCeEEEEecCCEEEEE
Q psy74            48 GRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWV-ARNRFAVLDRNHTILIK  125 (134)
Q Consensus        48 ~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~~~~g~g~~AvFV-aRNRfAvldk~~~i~Ik  125 (134)
                      ....++.++++|....+++.+       +|.+.++.++...       ....|.+.+.+|- ..+++|+.+.+++|.|.
T Consensus       355 ~~~~~~~~~~spdg~~la~~~-------~~~~~i~~~~~~~-------~~~~~~i~~~~~spdg~~la~~~~~g~v~l~  419 (814)
T 3mkq_A          355 VDVFPQSLAHSPNGRFVTVVG-------DGEYVIYTALAWR-------NKAFGKCQDFVWGPDSNSYALIDETGQIKYY  419 (814)
T ss_dssp             CSSCCSEEEECTTSSEEEEEE-------TTEEEEEETTTTE-------EEEEEECSEEEECTTSSCEEEECTTCCEEEE
T ss_pred             CccCCceeEECCCCCEEEEec-------CCEEEEEECcccc-------ccCCCceEEEEEeCCCCeEEEEeCCCcEEEE
Confidence            344678999999888777763       3578888765331       1223455566666 46677777776666664

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=92.63  E-value=2  Score=33.37  Aligned_cols=105  Identities=16%  Similarity=0.192  Sum_probs=61.5

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-cccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERKE   93 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~~   93 (134)
                      .++.|.-. .++.|+.||+.+.+  .+..+++ ...+.+.+.++|....++++..     .+|...+..+-.... ... 
T Consensus       150 dg~~l~sgs~dg~v~iwd~~~~~--~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~-----~dg~v~~wd~~~~~~~~~~-  220 (357)
T 4g56_B          150 DGTQAVSGGKDFSVKVWDLSQKA--VLKSYNA-HSSEVNCVAACPGKDTIFLSCG-----EDGRILLWDTRKPKPATRI-  220 (357)
T ss_dssp             SSSEEEEEETTSCEEEEETTTTE--EEEEECC-CSSCEEEEEECTTCSSCEEEEE-----TTSCEEECCTTSSSCBCBC-
T ss_pred             CCCEEEEEeCCCeEEEEECCCCc--EEEEEcC-CCCCEEEEEEccCCCceeeeec-----cCCceEEEECCCCceeeee-
Confidence            34555555 89999999998754  3444453 2236789999998876666644     334566654332211 111 


Q ss_pred             ccCCccccceeEEEEe--CCeEEEEecCCEEEEEeCCC
Q psy74            94 VADGKRSTGISAVWVA--RNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVa--RNRfAvldk~~~i~Iknl~n  129 (134)
                      ......+...+..|--  .+.||+=..+++|.|-|+.+
T Consensus       221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred             eeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence            0112223344555542  34566666788899999854

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=92.35  E-value=2.5  Score=31.07  Aligned_cols=63  Identities=8%  Similarity=0.058  Sum_probs=41.9

Q ss_pred             eCCEEEEEeC--CeEEEEECC--CCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74            16 HNNVMYYVKE--RFLHRLDLT--NSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP   85 (134)
Q Consensus        16 ~~n~L~Yvke--k~l~~~D~~--t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp   85 (134)
                      .++.||..-.  ..|+.||+.  +..-..+..+....  .+..+.++|....++++..     ++|...++.+.
T Consensus        48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~-----~~~~i~~~d~~  114 (343)
T 1ri6_A           48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG--SLTHISTDHQGQFVFVGSY-----NAGNVSVTRLE  114 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS--CCSEEEECTTSSEEEEEET-----TTTEEEEEEEE
T ss_pred             CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC--CCcEEEEcCCCCEEEEEec-----CCCeEEEEECC
Confidence            4566777743  899999998  44444455555222  6789999999887777644     44556666553

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=92.32  E-value=2.4  Score=30.93  Aligned_cols=101  Identities=12%  Similarity=0.115  Sum_probs=61.5

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      .++.|+-. .+..|+.||+.+.+........+    ++..+.++|....+++.+      ++|...++.+......   .
T Consensus       194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~------~~~~i~~~~~~~~~~~---~  260 (337)
T 1gxr_A          194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS----QIFSLGYCPTGEWLAVGM------ESSNVEVLHVNKPDKY---Q  260 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECSS----CEEEEEECTTSSEEEEEE------TTSCEEEEETTSSCEE---E
T ss_pred             CCCEEEEEecCCcEEEEECCCCceEeeecCCC----ceEEEEECCCCCEEEEEc------CCCcEEEEECCCCCeE---E
Confidence            34455555 78999999998765433332212    578899999988777763      3346666665543211   1


Q ss_pred             cCCccccceeEEEEeC-CeEEEEecCCEEEEEeCCC
Q psy74            95 ADGKRSTGISAVWVAR-NRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        95 ~~~~~g~g~~AvFVaR-NRfAvldk~~~i~Iknl~n  129 (134)
                      .....+...+..|-.. +.+|+-..+++|.|-+++.
T Consensus       261 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~  296 (337)
T 1gxr_A          261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence            1233333445555543 3466666688999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=91.80  E-value=3.4  Score=32.70  Aligned_cols=106  Identities=18%  Similarity=0.290  Sum_probs=68.2

Q ss_pred             CEEEEE--eCCeEEEEECCCC--------CceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCC
Q psy74            18 NVMYYV--KERFLHRLDLTNS--------KDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE   87 (134)
Q Consensus        18 n~L~Yv--kek~l~~~D~~t~--------~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~   87 (134)
                      ..++++  .+..|+.||+.+.        .-.++..+++. -.++..|+++|.....|++..     ..|...++.+...
T Consensus       141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~-----~dg~i~vwd~~~~  214 (430)
T 2xyi_A          141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH-QKEGYGLSWNPNLNGYLLSAS-----DDHTICLWDINAT  214 (430)
T ss_dssp             EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC-SSCCCCEEECTTSTTEEEEEC-----TTSCEEEEETTSC
T ss_pred             CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC-CCCeEEEEeCCCCCCeEEEEe-----CCCeEEEEeCCCC
Confidence            346665  6788999999862        23456666632 226789999999885666544     4567777776653


Q ss_pred             Ccc-c----ccccCCccccceeEEEE--eCCeEEEEecCCEEEEEeCCC
Q psy74            88 ESE-R----KEVADGKRSTGISAVWV--ARNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        88 ~~~-~----~~~~~~~~g~g~~AvFV--aRNRfAvldk~~~i~Iknl~n  129 (134)
                      ... .    ...-....+...+..|-  ..+.||+-..+++|.|.|+..
T Consensus       215 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          215 PKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             CBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             CCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            221 0    11112344445566676  367788877789999999964

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=91.70  E-value=3.4  Score=31.37  Aligned_cols=104  Identities=13%  Similarity=0.247  Sum_probs=63.2

Q ss_pred             EEEEE--eCCeEEEEECCCCCceeeEEeecCC-----CCCceEEEeccCCCeEEEEeccCCCCCC--ceEEEEEccCCCc
Q psy74            19 VMYYV--KERFLHRLDLTNSKDSVVMQLRGGG-----RIPAHSISYNATEHSILVTTRNANNFEN--STYDLYMIPKEES   89 (134)
Q Consensus        19 ~L~Yv--kek~l~~~D~~t~~~~~~~slrg~~-----~~~~~slsyNpae~~vLv~~~~~~~~d~--g~yeL~~lpk~~~   89 (134)
                      .++..  .+..|+.||+.+.+.  +..+....     ..+...+.++|....+|++..    .|+  +...++.+.....
T Consensus       179 ~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~d~~~~~i~~~d~~~~~~  252 (416)
T 2pm9_A          179 HVFASAGSSNFASIWDLKAKKE--VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT----GSDNDPSILIWDLRNANT  252 (416)
T ss_dssp             TEEEEESSSSCEEEEETTTTEE--EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE----CCSSSCCCCEEETTSTTS
T ss_pred             cEEEEEcCCCCEEEEECCCCCc--ceEEeccccccccCCceEEEEECCCCCCEEEEEE----CCCCCceEEEEeCCCCCC
Confidence            45554  889999999987543  34444211     457899999999765555544    232  2666666554211


Q ss_pred             ccccccC-CccccceeEEEE--eCCeEEEEecCCEEEEEeCCC
Q psy74            90 ERKEVAD-GKRSTGISAVWV--ARNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        90 ~~~~~~~-~~~g~g~~AvFV--aRNRfAvldk~~~i~Iknl~n  129 (134)
                      - ...-. ...+...+..|-  ..+.+|+-..+++|.|-|++.
T Consensus       253 ~-~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~  294 (416)
T 2pm9_A          253 P-LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES  294 (416)
T ss_dssp             C-SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred             C-cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence            0 00112 334444556665  356777777789999999863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=91.70  E-value=3.6  Score=31.52  Aligned_cols=106  Identities=10%  Similarity=0.073  Sum_probs=63.8

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      .++.|+-. .+..|+.||+.+..  .+..+....-.+..++.++|.....|++..     +.|...++.+.....- ...
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-----~dg~i~vwd~~~~~~~-~~~  329 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGY-----ENGMLAQWDLRSPECP-VGE  329 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEE-----TTSEEEEEETTCTTSC-SEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEe-----CCCeEEEEEcCCCcCc-hhh
Confidence            34445444 78899999998754  333343333447889999999885555544     4467777766543210 011


Q ss_pred             cCCccccceeEEEEeCCeE-EEEecCCEEEEEeCCC
Q psy74            95 ADGKRSTGISAVWVARNRF-AVLDRNHTILIKNLKN  129 (134)
Q Consensus        95 ~~~~~g~g~~AvFVaRNRf-Avldk~~~i~Iknl~n  129 (134)
                      -....+....++|..-.++ |.-..+++|.|-++..
T Consensus       330 ~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          330 FLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred             hhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence            1122334566667776654 4444488999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=91.67  E-value=3.5  Score=31.38  Aligned_cols=104  Identities=10%  Similarity=0.084  Sum_probs=64.5

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-ccccc
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERKEV   94 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~~~   94 (134)
                      ++.|+-. .+..|+.||+.   ..++..+++ ...+...+.++|....+|++..     ..|...++.+..... +....
T Consensus       175 ~~~l~~~~~d~~i~i~d~~---~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~  245 (383)
T 3ei3_B          175 RQMLATGDSTGRLLLLGLD---GHEIFKEKL-HKAKVTHAEFNPRCDWLMATSS-----VDATVKLWDLRNIKDKNSYIA  245 (383)
T ss_dssp             TTEEEEEETTSEEEEEETT---SCEEEEEEC-SSSCEEEEEECSSCTTEEEEEE-----TTSEEEEEEGGGCCSTTCEEE
T ss_pred             CCEEEEECCCCCEEEEECC---CCEEEEecc-CCCcEEEEEECCCCCCEEEEEe-----CCCEEEEEeCCCCCcccceEE
Confidence            4555555 88999999994   335666663 2346889999999885555544     345777777665321 11111


Q ss_pred             cCCccccceeEEEEe--CCeEEEEecCCEEEEEeCCC
Q psy74            95 ADGKRSTGISAVWVA--RNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        95 ~~~~~g~g~~AvFVa--RNRfAvldk~~~i~Iknl~n  129 (134)
                      .-...+...+..|-.  .+.+|+-..+++|.|-|+..
T Consensus       246 ~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          246 EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             EEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             EecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            112334444455543  35677777789999999863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=91.64  E-value=3  Score=31.70  Aligned_cols=107  Identities=14%  Similarity=0.173  Sum_probs=63.6

Q ss_pred             CCEEEEE-eCCeEEEEECCCCC--ceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCC-----
Q psy74            17 NNVMYYV-KERFLHRLDLTNSK--DSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEE-----   88 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~--~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~-----   88 (134)
                      +..|+.. .+..|+.||+.+..  ...+..+.+ .-.+...|.++|.+...|++..     ..|...++.+....     
T Consensus        79 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~  152 (416)
T 2pm9_A           79 NKIIAGALDNGSLELYSTNEANNAINSMARFSN-HSSSVKTVKFNAKQDNVLASGG-----NNGEIFIWDMNKCTESPSN  152 (416)
T ss_dssp             SSCEEEEESSSCEEEECCSSTTSCCCEEEECCC-SSSCCCEEEECSSSTTBEEEEC-----SSSCEEBCBTTTTSSCTTT
T ss_pred             CCeEEEEccCCeEEEeecccccccccchhhccC-CccceEEEEEcCCCCCEEEEEc-----CCCeEEEEECCCCcccccc
Confidence            4445555 78999999999822  235555553 3336789999998544555433     34566666554432     


Q ss_pred             -c-ccccccCCccccceeEEEEeC--CeEEEEecCCEEEEEeCCC
Q psy74            89 -S-ERKEVADGKRSTGISAVWVAR--NRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        89 -~-~~~~~~~~~~g~g~~AvFVaR--NRfAvldk~~~i~Iknl~n  129 (134)
                       . -.........+...+..|-..  +.+|+-..+++|.|-|++.
T Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  197 (416)
T 2pm9_A          153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA  197 (416)
T ss_dssp             CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred             ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence             1 000011233444555666543  5677767788999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=90.58  E-value=4.5  Score=30.74  Aligned_cols=97  Identities=11%  Similarity=0.139  Sum_probs=62.6

Q ss_pred             eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-ccc-cccCCcccc
Q psy74            24 KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERK-EVADGKRST  101 (134)
Q Consensus        24 kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~-~~~~~~~g~  101 (134)
                      .|+.|+.||..+......+....   .....+.+.|....++.. .     ..|.-.++.+..... ... ..-.+..+.
T Consensus        75 ~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~-~-----~d~~v~iw~~~~~~~~~~~~~~~~~h~~~  145 (340)
T 1got_B           75 QDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAYAPSGNYVACG-G-----LDNICSIYNLKTREGNVRVSRELAGHTGY  145 (340)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSS---SCEEEEEECTTSSEEEEE-E-----TTCEEEEEETTTCSBSCEEEEEEECCSSC
T ss_pred             CCCcEEEEECCCCCcceEeecCC---ccEEEEEECCCCCEEEEE-e-----CCCeEEEEECccCCCcceeEEEecCCCcc
Confidence            89999999998865443333331   246889999987755544 2     335667776654321 000 011244455


Q ss_pred             ceeEEEEeCCeEEEEecCCEEEEEeCCC
Q psy74           102 GISAVWVARNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus       102 g~~AvFVaRNRfAvldk~~~i~Iknl~n  129 (134)
                      .....|..-++++.-..+++|.|-|++.
T Consensus       146 v~~~~~~~~~~l~s~s~d~~i~~wd~~~  173 (340)
T 1got_B          146 LSCCRFLDDNQIVTSSGDTTCALWDIET  173 (340)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             EEEEEECCCCcEEEEECCCcEEEEECCC
Confidence            6667888889988888888999999853

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=90.40  E-value=4.7  Score=34.88  Aligned_cols=111  Identities=9%  Similarity=0.160  Sum_probs=66.9

Q ss_pred             eeeCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCC-CeEEEEeccCCCCCCceEEEEEccCCCccc
Q psy74            14 TVHNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATE-HSILVTTRNANNFENSTYDLYMIPKEESER   91 (134)
Q Consensus        14 ~~~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae-~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~   91 (134)
                      .-.++.|.-. .++.|+.||+.+.....+..++| ...+.+.|.++|.. ...|++..     ..|..-++.+.......
T Consensus        18 s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s-----~Dg~I~vwd~~~~~~~~   91 (753)
T 3jro_A           18 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCS-----YDGKVLIWKEENGRWSQ   91 (753)
T ss_dssp             CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEE-----TTSCEEEEEEETTEEEE
T ss_pred             CCCCCeEEEEECCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCCEEEEEe-----CCCeEEEEECCCCcccc
Confidence            3345666666 89999999998755556666664 34478999998773 34444433     33456665544321001


Q ss_pred             ccccCCccccceeEEEEe---CCeEEEEecCCEEEEEeCCCc
Q psy74            92 KEVADGKRSTGISAVWVA---RNRFAVLDRNHTILIKNLKNE  130 (134)
Q Consensus        92 ~~~~~~~~g~g~~AvFVa---RNRfAvldk~~~i~Iknl~n~  130 (134)
                      ........+...+..|-.   .+.+|+-..+++|.|-|+...
T Consensus        92 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence            111123334344455544   457888888999999998654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=90.04  E-value=4.9  Score=30.71  Aligned_cols=108  Identities=10%  Similarity=0.173  Sum_probs=60.2

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      .+..|.-. .|+.|+.||+.+..-.....+....-.+.+.|.++|....++..+.     | |...+..+..........
T Consensus        27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~-----D-~~v~iw~~~~~~~~~~~~  100 (345)
T 3fm0_A           27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF-----D-ATTCIWKKNQDDFECVTT  100 (345)
T ss_dssp             TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET-----T-SCEEEEEECCC-EEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC-----C-CcEEEEEccCCCeEEEEE
Confidence            44555555 8999999999875433333333223446889999997765555432     3 344444433221000011


Q ss_pred             cCCccccceeEEEEe-CCeEEEEecCCEEEEEeCCC
Q psy74            95 ADGKRSTGISAVWVA-RNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        95 ~~~~~g~g~~AvFVa-RNRfAvldk~~~i~Iknl~n  129 (134)
                      -+++.+...+..|-. .+.+|.-..+++|.|-|++.
T Consensus       101 ~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A          101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred             ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence            123344445555543 34566666688888888853

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=90.03  E-value=6.3  Score=31.55  Aligned_cols=105  Identities=10%  Similarity=0.036  Sum_probs=67.0

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEecc----------CCCeEEEEeccCCCCCCceEEEEEc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNA----------TEHSILVTTRNANNFENSTYDLYMI   84 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNp----------ae~~vLv~~~~~~~~d~g~yeL~~l   84 (134)
                      .+..|... .+..|+.||+.+.+.  +..+.+....+...+.+.|          .... |++..     +.|...++.+
T Consensus       499 ~g~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~-l~~~~-----~dg~i~iw~~  570 (615)
T 1pgu_A          499 SETYIAAGDVMGKILLYDLQSREV--KTSRWAFRTSKINAISWKPAEKGANEEEIEEDL-VATGS-----LDTNIFIYSV  570 (615)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEE--EECCSCCCSSCEEEEEECCCC------CCSCCE-EEEEE-----TTSCEEEEES
T ss_pred             CCCEEEEcCCCCeEEEeeCCCCcc--eeEeecCCCCceeEEEEcCccccccccccCCCE-EEEEc-----CCCcEEEEEC
Confidence            45556666 789999999987433  3334443455789999999          4444 44433     3457777776


Q ss_pred             cCCCcccccccCCccccceeEEEEeCCeEEEEecCCEEEEEeCCC
Q psy74            85 PKEESERKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        85 pk~~~~~~~~~~~~~g~g~~AvFVaRNRfAvldk~~~i~Iknl~n  129 (134)
                      ..... ....-....+.-.+..|-.-.+++.-..+++|.|-+++-
T Consensus       571 ~~~~~-~~~~~~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          571 KRPMK-IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL  614 (615)
T ss_dssp             SCTTC-CEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred             CCCce-echhhhcCccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence            54321 111123455556777888888866666688999988864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=90.03  E-value=4.7  Score=30.01  Aligned_cols=106  Identities=9%  Similarity=0.057  Sum_probs=60.6

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeE-EeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCC------
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVM-QLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEE------   88 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~-slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~------   88 (134)
                      ++.|+.. .++.|+.||+.+.....+. .+......+...|.++|....++..+      ..|...++.+....      
T Consensus       108 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~~~~  181 (372)
T 1k8k_C          108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS------CDFKCRIFSAYIKEVEERPA  181 (372)
T ss_dssp             SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE------TTSCEEEEECCCTTTSCCCC
T ss_pred             CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc------CCCCEEEEEccccccccccc
Confidence            4455555 7899999999986543332 33233345789999999777665553      33456666542110      


Q ss_pred             ---------ccccc-ccCCccccceeEEEEeC-CeEEEEecCCEEEEEeCC
Q psy74            89 ---------SERKE-VADGKRSTGISAVWVAR-NRFAVLDRNHTILIKNLK  128 (134)
Q Consensus        89 ---------~~~~~-~~~~~~g~g~~AvFVaR-NRfAvldk~~~i~Iknl~  128 (134)
                               .+..- .-....+...+..|-.- +.+|+-..+++|.|-|+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  232 (372)
T 1k8k_C          182 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  232 (372)
T ss_dssp             CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence                     01100 11122333444455433 356666668899999984

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=89.98  E-value=4.5  Score=29.81  Aligned_cols=103  Identities=10%  Similarity=0.198  Sum_probs=61.3

Q ss_pred             EEEEE--eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-cccccc
Q psy74            19 VMYYV--KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERKEVA   95 (134)
Q Consensus        19 ~L~Yv--kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~~~~   95 (134)
                      .++.+  .+..|+.||+.+.+.  +..+++ .-.+...|.++|.+...|++..     +.|...++.+..... ......
T Consensus        86 ~~l~~~~~dg~i~v~d~~~~~~--~~~~~~-~~~~i~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~  157 (366)
T 3k26_A           86 PLLAVAGSRGIIRIINPITMQC--IKHYVG-HGNAINELKFHPRDPNLLLSVS-----KDHALRLWNIQTDTLVAIFGGV  157 (366)
T ss_dssp             EEEEEEETTCEEEEECTTTCCE--EEEEES-CCSCEEEEEECSSCTTEEEEEE-----TTSCEEEEETTTTEEEEEECST
T ss_pred             CEEEEecCCCEEEEEEchhceE--eeeecC-CCCcEEEEEECCCCCCEEEEEe-----CCCeEEEEEeecCeEEEEeccc
Confidence            34444  888999999987543  344443 2336889999995555555544     345677776654321 110001


Q ss_pred             CCccccceeEEEEeC-CeEEEEecCCEEEEEeCCC
Q psy74            96 DGKRSTGISAVWVAR-NRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        96 ~~~~g~g~~AvFVaR-NRfAvldk~~~i~Iknl~n  129 (134)
                      ....+...+..|-.. +.+++-..+++|.|-|+..
T Consensus       158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             ccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            234444455555433 4566666788999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=89.87  E-value=5.2  Score=30.32  Aligned_cols=101  Identities=10%  Similarity=0.154  Sum_probs=58.2

Q ss_pred             eCCEEEEE--eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-ccc
Q psy74            16 HNNVMYYV--KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERK   92 (134)
Q Consensus        16 ~~n~L~Yv--kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~   92 (134)
                      .+..||..  .+..|+.||+.+.+-.  ..+....  .+..+.+.|...-++++..     +.+...++.+..... ...
T Consensus        42 dg~~l~~~~~~d~~i~v~d~~~~~~~--~~~~~~~--~v~~~~~spdg~~l~~~~~-----~~~~v~v~d~~~~~~~~~~  112 (391)
T 1l0q_A           42 DGTKVYVANAHSNDVSIIDTATNNVI--ATVPAGS--SPQGVAVSPDGKQVYVTNM-----ASSTLSVIDTTSNTVAGTV  112 (391)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTTEEE--EEEECSS--SEEEEEECTTSSEEEEEET-----TTTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEECCCCCeEEEEECCCCeEE--EEEECCC--CccceEECCCCCEEEEEEC-----CCCEEEEEECCCCeEEEEE
Confidence            45567776  7899999999875433  3333212  7889999998887777643     445566655432211 110


Q ss_pred             cccCCccccceeEEEEeCCe-EEEEec-CCEEEEEeCCC
Q psy74            93 EVADGKRSTGISAVWVARNR-FAVLDR-NHTILIKNLKN  129 (134)
Q Consensus        93 ~~~~~~~g~g~~AvFVaRNR-fAvldk-~~~i~Iknl~n  129 (134)
                         .. .+...+..|-.-.+ +++... +++|.+-|+..
T Consensus       113 ---~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  147 (391)
T 1l0q_A          113 ---KT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT  147 (391)
T ss_dssp             ---EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ---eC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence               01 11123334443344 445554 78888888753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=89.86  E-value=4.6  Score=29.72  Aligned_cols=108  Identities=10%  Similarity=0.157  Sum_probs=62.5

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-cccc-
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERKE-   93 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~~-   93 (134)
                      ++.|+-. .+..|+.||+.+.+....+..    -.++..+.++|....+++.... .....|...++.+..... .... 
T Consensus        86 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~-~~~~~g~i~~~d~~~~~~~~~~~~  160 (369)
T 3zwl_B           86 TKYCVTGSADYSIKLWDVSNGQCVATWKS----PVPVKRVEFSPCGNYFLAILDN-VMKNPGSINIYEIERDSATHELTK  160 (369)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEEC----SSCEEEEEECTTSSEEEEEECC-BTTBCCEEEEEEEEECTTTCCEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeec----CCCeEEEEEccCCCEEEEecCC-ccCCCCEEEEEEecCCccceeecc
Confidence            4555555 889999999998665444432    2267899999988877776441 111236677776554422 0000 


Q ss_pred             -------ccCCccc--cceeEEEEeCC-eEEEEecCCEEEEEeCCC
Q psy74            94 -------VADGKRS--TGISAVWVARN-RFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        94 -------~~~~~~g--~g~~AvFVaRN-RfAvldk~~~i~Iknl~n  129 (134)
                             ......+  ...+..|-... .+|+-..+++|.|.|+..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  206 (369)
T 3zwl_B          161 VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN  206 (369)
T ss_dssp             ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence                   0001111  23334444433 455556688999999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.19  E-value=7.7  Score=32.62  Aligned_cols=104  Identities=12%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      .++.|.-. .+..|+.||+.+.+..  ..+.+ .-.+.+.+.++|....++..+      ++|...++.+.....- ...
T Consensus        66 ~~~~l~~~~~dg~i~vw~~~~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~------~dg~i~vw~~~~~~~~-~~~  135 (814)
T 3mkq_A           66 RKNWIIVGSDDFRIRVFNYNTGEKV--VDFEA-HPDYIRSIAVHPTKPYVLSGS------DDLTVKLWNWENNWAL-EQT  135 (814)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCCEE--EEEEC-CSSCEEEEEECSSSSEEEEEE------TTSEEEEEEGGGTSEE-EEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEE--EEEec-CCCCEEEEEEeCCCCEEEEEc------CCCEEEEEECCCCceE-EEE
Confidence            45556665 7899999999986543  33332 223688999999888766542      4567778776543110 001


Q ss_pred             cCCccccceeEEEEe--CCeEEEEecCCEEEEEeCCC
Q psy74            95 ADGKRSTGISAVWVA--RNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        95 ~~~~~g~g~~AvFVa--RNRfAvldk~~~i~Iknl~n  129 (134)
                      -....+...+..|-.  .+.+++-..+++|.|-++..
T Consensus       136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~  172 (814)
T 3mkq_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (814)
T ss_dssp             EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            123334455666763  46777777789999999853

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=88.99  E-value=6.6  Score=33.96  Aligned_cols=106  Identities=10%  Similarity=0.111  Sum_probs=64.0

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccC--CCeEEEEeccCCCCCCceEEEEEccCCCccccc
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT--EHSILVTTRNANNFENSTYDLYMIPKEESERKE   93 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpa--e~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~   93 (134)
                      ++.|+-. .|+.|+.||+.+..-..+..+.+ .-.+...+.++|.  ...++.. .     .+|..-++.+.........
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~l~sg-s-----~dg~I~vwdl~~~~~~~~~  139 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVA-S-----SDGKVSVVEFKENGTTSPI  139 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEE-E-----TTSEEEEEECCSSSCCCCE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccC-CCCCeEEEEECCCCCCCEEEEE-e-----CCCcEEEEEeecCCCccee
Confidence            4455555 88999999999865445555553 3346889999998  4554444 2     3456666665443211111


Q ss_pred             ccCCccccceeEEEEe--------------CCeEEEEecCCEEEEEeCCC
Q psy74            94 VADGKRSTGISAVWVA--------------RNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVa--------------RNRfAvldk~~~i~Iknl~n  129 (134)
                      ......+...+..|-.              .+.+|+-..+++|.|-|+..
T Consensus       140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~  189 (753)
T 3jro_A          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS  189 (753)
T ss_dssp             EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEET
T ss_pred             EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccC
Confidence            1123334444555544              45677777788899988753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=88.97  E-value=7.3  Score=30.77  Aligned_cols=64  Identities=5%  Similarity=0.004  Sum_probs=43.0

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeec----------------------CCCCCceEEEeccCCCeEEEEeccCC
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRG----------------------GGRIPAHSISYNATEHSILVTTRNAN   72 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg----------------------~~~~~~~slsyNpae~~vLv~~~~~~   72 (134)
                      .++.|+.. .++.|+.||+.+.+-...+.+..                      ..-.....|.+.|....+++...   
T Consensus       251 d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---  327 (450)
T 2vdu_B          251 KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE---  327 (450)
T ss_dssp             STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET---
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC---
Confidence            45566666 89999999999866544444321                      11234678899998888877754   


Q ss_pred             CCCCceEEEEEc
Q psy74            73 NFENSTYDLYMI   84 (134)
Q Consensus        73 ~~d~g~yeL~~l   84 (134)
                        +.+.-.++.+
T Consensus       328 --~d~~i~iw~~  337 (450)
T 2vdu_B          328 --ATKCIIILEM  337 (450)
T ss_dssp             --TCSEEEEEEE
T ss_pred             --CCCeEEEEEe
Confidence              4457777777

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=88.87  E-value=5.6  Score=29.30  Aligned_cols=103  Identities=10%  Similarity=0.143  Sum_probs=59.4

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEee---cCCCCCceEEE----eccCCCeEEEEeccCCCCCCceEEEEEccCC
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLR---GGGRIPAHSIS----YNATEHSILVTTRNANNFENSTYDLYMIPKE   87 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slr---g~~~~~~~sls----yNpae~~vLv~~~~~~~~d~g~yeL~~lpk~   87 (134)
                      .++.|+.. .++.|+.||+.+.. .++..++   |..-.+..++.    ++|....++..+      +.|...++.+...
T Consensus       128 ~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~  200 (357)
T 3i2n_A          128 GAPEIVTGSRDGTVKVWDPRQKD-DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY------DNGDIKLFDLRNM  200 (357)
T ss_dssp             CCCEEEEEETTSCEEEECTTSCS-SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE------TTSEEEEEETTTT
T ss_pred             CccEEEEEeCCCeEEEEeCCCCC-CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc------cCCeEEEEECccC
Confidence            34456655 88999999999754 2344444   33334566776    566666555543      3456666655433


Q ss_pred             CcccccccCCccccceeEEEE----eCCeEEEEecCCEEEEEeCC
Q psy74            88 ESERKEVADGKRSTGISAVWV----ARNRFAVLDRNHTILIKNLK  128 (134)
Q Consensus        88 ~~~~~~~~~~~~g~g~~AvFV----aRNRfAvldk~~~i~Iknl~  128 (134)
                      ..   .......+...+..|-    ..+.+++-..+++|.|-++.
T Consensus       201 ~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          201 AL---RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             EE---EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             ce---eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence            21   0111223334555565    35777777778899988874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=88.78  E-value=7.5  Score=30.69  Aligned_cols=106  Identities=12%  Similarity=0.080  Sum_probs=58.9

Q ss_pred             eCCEEEEE--eCCeEEEEECC--CCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccc
Q psy74            16 HNNVMYYV--KERFLHRLDLT--NSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESER   91 (134)
Q Consensus        16 ~~n~L~Yv--kek~l~~~D~~--t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~   91 (134)
                      .+..|+.+  .++.|+.||+.  +......+.-.+ .-..+..|.++|....+++.+.     ++ .--++.+.......
T Consensus       113 d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~-----~g-~v~~~~~~~~~~~~  185 (450)
T 2vdu_B          113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC-FSKRPNAISIAEDDTTVIIADK-----FG-DVYSIDINSIPEEK  185 (450)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE-CSSCEEEEEECTTSSEEEEEET-----TS-EEEEEETTSCCCSS
T ss_pred             CCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc-CCCCceEEEEcCCCCEEEEEeC-----CC-cEEEEecCCccccc
Confidence            45556565  78999999998  544443333221 2235789999998877766633     43 33333333221110


Q ss_pred             --ccccCCccccceeEEEEeC---C-eEEEEecCCEEEEEeCC
Q psy74            92 --KEVADGKRSTGISAVWVAR---N-RFAVLDRNHTILIKNLK  128 (134)
Q Consensus        92 --~~~~~~~~g~g~~AvFVaR---N-RfAvldk~~~i~Iknl~  128 (134)
                        ...-....+...+..|-.-   + .+|.-+.+++|.|-|+.
T Consensus       186 ~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          186 FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred             ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence              0011123333344455543   4 45555668899999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=88.74  E-value=6.8  Score=30.17  Aligned_cols=105  Identities=10%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             CEEEEE--eCCeEEEEECCCCCc-----eeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-
Q psy74            18 NVMYYV--KERFLHRLDLTNSKD-----SVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-   89 (134)
Q Consensus        18 n~L~Yv--kek~l~~~D~~t~~~-----~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-   89 (134)
                      +.++..  .|..|+.||+.+...     .++..+.|. -.+...|.++|....+|++..     ..|...++.+..... 
T Consensus        94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~-----~dg~i~iwd~~~~~~~  167 (402)
T 2aq5_A           94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH-TKRVGIVAWHPTAQNVLLSAG-----CDNVILVWDVGTGAAV  167 (402)
T ss_dssp             TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC-SSCEEEEEECSSBTTEEEEEE-----TTSCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC-CCeEEEEEECcCCCCEEEEEc-----CCCEEEEEECCCCCcc
Confidence            334444  789999999998532     456666642 236789999999755555544     334566665543211 


Q ss_pred             ccccccCCccccceeEEEEe-CCeEEEEecCCEEEEEeCCC
Q psy74            90 ERKEVADGKRSTGISAVWVA-RNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        90 ~~~~~~~~~~g~g~~AvFVa-RNRfAvldk~~~i~Iknl~n  129 (134)
                      ... ......+...+..|-. -+.+|+-..+++|.|-|+..
T Consensus       168 ~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  207 (402)
T 2aq5_A          168 LTL-GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK  207 (402)
T ss_dssp             EEE-CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred             EEE-ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence            000 0023344445555553 34677777788999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=88.30  E-value=7.6  Score=30.16  Aligned_cols=104  Identities=13%  Similarity=0.158  Sum_probs=61.0

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-ccccc
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERKEV   94 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~~~   94 (134)
                      ++.|.-. .|+.|+.||+.+.+  .+..++| .-.+...+.++|....+|++..    .| |+--+..+..... .... 
T Consensus       139 g~~l~sgs~d~~i~iwd~~~~~--~~~~~~~-h~~~V~~~~~~~~~~~~l~s~s----~D-~~v~iwd~~~~~~~~~~~-  209 (344)
T 4gqb_B          139 GTQAVSGSKDICIKVWDLAQQV--VLSSYRA-HAAQVTCVAASPHKDSVFLSCS----ED-NRILLWDTRCPKPASQIG-  209 (344)
T ss_dssp             SSEEEEEETTSCEEEEETTTTE--EEEEECC-CSSCEEEEEECSSCTTEEEEEE----TT-SCEEEEETTSSSCEEECC-
T ss_pred             CCEEEEEeCCCeEEEEECCCCc--EEEEEcC-cCCceEEEEecCCCCCceeeec----cc-cccccccccccceeeeee-
Confidence            4445555 89999999998753  4455554 2336789999999888877654    34 4566665432211 1110 


Q ss_pred             cCCccccceeEEEEeC--CeEEEEecCCEEEEEeCCC
Q psy74            95 ADGKRSTGISAVWVAR--NRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        95 ~~~~~g~g~~AvFVaR--NRfAvldk~~~i~Iknl~n  129 (134)
                      .........+..|-..  +-+|.=..+++|.|-|+..
T Consensus       210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~  246 (344)
T 4gqb_B          210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS  246 (344)
T ss_dssp             ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred             cceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence            1111122345556543  3355556688999998853

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=87.88  E-value=8.9  Score=30.47  Aligned_cols=108  Identities=14%  Similarity=0.221  Sum_probs=58.4

Q ss_pred             CcceeeCCEEEEE-eCC---eEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccC
Q psy74            11 PAYTVHNNVMYYV-KER---FLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK   86 (134)
Q Consensus        11 Pa~~~~~n~L~Yv-kek---~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk   86 (134)
                      |+|.-.+..|+|+ .++   .|+.||+.+++...   +.+. -.....+.++|....++++..     .+|..+|+.+.-
T Consensus       184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~---l~~~-~~~~~~~~~spdg~~la~~~~-----~~g~~~i~~~d~  254 (415)
T 2hqs_A          184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---VASF-PRHNGAPAFSPDGSKLAFALS-----KTGSLNLYVMDL  254 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---EECC-SSCEEEEEECTTSSEEEEEEC-----TTSSCEEEEEET
T ss_pred             eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE---eecC-CCcccCEEEcCCCCEEEEEEe-----cCCCceEEEEEC
Confidence            4555567889998 443   89999999865432   3311 115678999998887776543     233455665543


Q ss_pred             CCcccccccCCccccceeEEEEeCCe-EEEEec-CC--EEEEEeCC
Q psy74            87 EESERKEVADGKRSTGISAVWVARNR-FAVLDR-NH--TILIKNLK  128 (134)
Q Consensus        87 ~~~~~~~~~~~~~g~g~~AvFVaRNR-fAvldk-~~--~i~Iknl~  128 (134)
                      ... ....-....+...+..|-.-.+ +|+... .+  +|.+.|++
T Consensus       255 ~~~-~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          255 ASG-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             TTC-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCC-CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            221 1111112222333444543334 444432 33  56666765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=87.70  E-value=7  Score=29.05  Aligned_cols=111  Identities=10%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             ceeeCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccC-CCeEEEEeccCCCCCCceEEEEEccCCCcc
Q psy74            13 YTVHNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT-EHSILVTTRNANNFENSTYDLYMIPKEESE   90 (134)
Q Consensus        13 ~~~~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpa-e~~vLv~~~~~~~~d~g~yeL~~lpk~~~~   90 (134)
                      |.-.+..|.=. .|+.|+.||+.+.....+..++| .-.+...+.++|. +...|++..     ..|+.-+..+......
T Consensus        17 ~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s-----~D~~v~iWd~~~~~~~   90 (297)
T 2pm7_B           17 MDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCS-----YDGKVMIWKEENGRWS   90 (297)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEE-----TTTEEEEEEBSSSCBC
T ss_pred             ECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEEc-----CCCEEEEEEcCCCceE
Confidence            33345556555 89999999998654455666764 2236789999754 445666544     3356666655432100


Q ss_pred             cccccCCccccceeEEEEe---CCeEEEEecCCEEEEEeCCC
Q psy74            91 RKEVADGKRSTGISAVWVA---RNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        91 ~~~~~~~~~g~g~~AvFVa---RNRfAvldk~~~i~Iknl~n  129 (134)
                      ....-....+...+..|-.   -+.+|+-..+++|.|-++..
T Consensus        91 ~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           91 QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence            0001112333344555554   35677777788999998864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=86.97  E-value=7.4  Score=28.58  Aligned_cols=103  Identities=7%  Similarity=-0.009  Sum_probs=64.2

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCC-ceeeEEeecCCCCCceEEEeccCCC-eEEEEeccCCCCCCceEEEEEc-cCCCccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSK-DSVVMQLRGGGRIPAHSISYNATEH-SILVTTRNANNFENSTYDLYMI-PKEESER   91 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~-~~~~~slrg~~~~~~~slsyNpae~-~vLv~~~~~~~~d~g~yeL~~l-pk~~~~~   91 (134)
                      .++.|+.. .+..|+.||+.+.. ..++..+.+ .-.+...+.++|... .++...      ..|..-++.+ .....  
T Consensus        22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~--   92 (342)
T 1yfq_A           22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGT------VQGEILKVDLIGSPSF--   92 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEE------TTSCEEEECSSSSSSE--
T ss_pred             CCCEEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEEEc------CCCeEEEEEeccCCce--
Confidence            45566665 89999999999844 444444442 223678999999877 555542      3356666655 33321  


Q ss_pred             ccccCC--ccccceeEEEEeCCeEEEEecCCEEEEEeCC
Q psy74            92 KEVADG--KRSTGISAVWVARNRFAVLDRNHTILIKNLK  128 (134)
Q Consensus        92 ~~~~~~--~~g~g~~AvFVaRNRfAvldk~~~i~Iknl~  128 (134)
                       ..-..  ..+.-.+..|-..+.+++-..+++|.|-|+.
T Consensus        93 -~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~  130 (342)
T 1yfq_A           93 -QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             -EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHH
T ss_pred             -EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccc
Confidence             11122  4444455566656677777778999998875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=86.50  E-value=9.1  Score=29.15  Aligned_cols=104  Identities=13%  Similarity=0.180  Sum_probs=58.6

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCcee-eEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSV-VMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~-~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      ++.|.-. .|+.|+.||+.+..... +..+.+ .-.+...+.++|....++..+      ..|...++.+....-.....
T Consensus       117 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s------~d~~i~~w~~~~~~~~~~~~  189 (345)
T 3fm0_A          117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPSQELLASAS------YDDTVKLYREEEDDWVCCAT  189 (345)
T ss_dssp             SSEEEEEETTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSSSSCEEEEE------TTSCEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEECCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCCCCEEEEEe------CCCcEEEEEecCCCEEEEEE
Confidence            4555555 89999999998855433 333333 334678999999887655543      33456666543321000001


Q ss_pred             cCCccccceeEEEEeC-CeEEEEecCCEEEEEeC
Q psy74            95 ADGKRSTGISAVWVAR-NRFAVLDRNHTILIKNL  127 (134)
Q Consensus        95 ~~~~~g~g~~AvFVaR-NRfAvldk~~~i~Iknl  127 (134)
                      -++..+...+..|-.. +.+|.-..+++|.|-++
T Consensus       190 ~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            1233343444555433 35666666788888764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=86.26  E-value=7.3  Score=30.07  Aligned_cols=101  Identities=11%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             CEEEEE--eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccccc
Q psy74            18 NVMYYV--KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA   95 (134)
Q Consensus        18 n~L~Yv--kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~   95 (134)
                      +.++.+  .+..|+.||+.+.+.  +..+++ ...+...|.|+|....+|++..     +.|+..++.+..   +..-..
T Consensus       239 ~~~la~g~~d~~i~~wd~~~~~~--~~~~~~-~~~~v~~l~~sp~~~~~lasgs-----~D~~i~iwd~~~---~~~~~~  307 (357)
T 4g56_B          239 DDTFACGDETGNVSLVNIKNPDS--AQTSAV-HSQNITGLAYSYHSSPFLASIS-----EDCTVAVLDADF---SEVFRD  307 (357)
T ss_dssp             TTEEEEEESSSCEEEEESSCGGG--CEEECC-CSSCEEEEEECSSSSCCEEEEE-----TTSCEEEECTTS---CEEEEE
T ss_pred             cceEEEeecccceeEEECCCCcE--eEEEec-cceeEEEEEEcCCCCCEEEEEe-----CCCEEEEEECCC---CcEeEE
Confidence            445655  788999999987543  334443 2236789999998766666543     334555554321   111112


Q ss_pred             CCccccceeEEEE--eCCeEEEEecCCEEEEEeCCC
Q psy74            96 DGKRSTGISAVWV--ARNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        96 ~~~~g~g~~AvFV--aRNRfAvldk~~~i~Iknl~n  129 (134)
                      -..++...+..|=  ..+.||.-..+++|.|-++..
T Consensus       308 ~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          308 LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            2344545556663  356788777789999999853

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=86.18  E-value=8.2  Score=28.32  Aligned_cols=108  Identities=8%  Similarity=0.053  Sum_probs=58.8

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccC------CCCCCc--eEEEEEccC
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNA------NNFENS--TYDLYMIPK   86 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~------~~~d~g--~yeL~~lpk   86 (134)
                      .++.|+.. .++.|+.||+.+.+-...+.    .-.+...+.+.|....+++.....      ...+.+  ...++.+..
T Consensus       229 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  304 (369)
T 3zwl_B          229 DLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF  304 (369)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT
T ss_pred             CCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC
Confidence            34455555 78999999998855433333    223578899999998888875410      000112  223332221


Q ss_pred             CCcccccccCCccccceeEEEEeCC-eEEEEecCCEEEEEeCCC
Q psy74            87 EESERKEVADGKRSTGISAVWVARN-RFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        87 ~~~~~~~~~~~~~g~g~~AvFVaRN-RfAvldk~~~i~Iknl~n  129 (134)
                      ..  ....-....+...+..|-.-. .+|.-..+++|.|-+++.
T Consensus       305 ~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          305 EE--EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             CC--EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             Cc--chhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            11  110112233334445554433 566666689999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=85.62  E-value=9.6  Score=28.58  Aligned_cols=102  Identities=16%  Similarity=0.267  Sum_probs=63.2

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccccc
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA   95 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~   95 (134)
                      ++.++.. .+..|+.||+.+...  +..+++ ...+...|.++|....++..+      ..|...++.+.....  ...-
T Consensus       217 ~~~~~~~~~~g~i~~~d~~~~~~--~~~~~~-~~~~i~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~--~~~~  285 (425)
T 1r5m_A          217 DDKFVIPGPKGAIFVYQITEKTP--TGKLIG-HHGPISVLEFNDTNKLLLSAS------DDGTLRIWHGGNGNS--QNCF  285 (425)
T ss_dssp             TTEEEEECGGGCEEEEETTCSSC--SEEECC-CSSCEEEEEEETTTTEEEEEE------TTSCEEEECSSSBSC--SEEE
T ss_pred             CCEEEEEcCCCeEEEEEcCCCce--eeeecc-CCCceEEEEECCCCCEEEEEc------CCCEEEEEECCCCcc--ceEe
Confidence            3444444 888999999987533  333442 223678999999887665553      345666765543311  1111


Q ss_pred             CCccccceeEEEEeCCeEEEEecCCEEEEEeCCC
Q psy74            96 DGKRSTGISAVWVARNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        96 ~~~~g~g~~AvFVaRNRfAvldk~~~i~Iknl~n  129 (134)
                      ....+...+..|-..+.+++-..+++|.|-|+++
T Consensus       286 ~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          286 YGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             CCCSSCEEEEEEETTTEEEEEETTSEEEEEETTT
T ss_pred             cCCCccEEEEEECCCCEEEEEeCCCcEEEEECCC
Confidence            2334445566676666777777789999999854

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=85.05  E-value=10  Score=28.45  Aligned_cols=108  Identities=15%  Similarity=0.219  Sum_probs=61.6

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEecc-CCCeEEEEeccCCCCCCceEEEEEccCCCccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNA-TEHSILVTTRNANNFENSTYDLYMIPKEESERKE   93 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNp-ae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~   93 (134)
                      .++.|.=. .|+.|+.||+.+.....+..++| .-.+...+.+.| .+...|++..    .| |+--+..+....-....
T Consensus        24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s----~D-~~v~iWd~~~~~~~~~~   97 (316)
T 3bg1_A           24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCS----YD-RKVIIWREENGTWEKSH   97 (316)
T ss_dssp             GGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEE----TT-SCEEEECCSSSCCCEEE
T ss_pred             CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEE----CC-CEEEEEECCCCcceEEE
Confidence            45555444 89999999998765556667775 233678899975 3444555433    23 45555544321100000


Q ss_pred             ccCCccccceeEEEEe---CCeEEEEecCCEEEEEeCCC
Q psy74            94 VADGKRSTGISAVWVA---RNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVa---RNRfAvldk~~~i~Iknl~n  129 (134)
                      .-..+.+...+..|-.   .+.+|.-..+++|.|-++..
T Consensus        98 ~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           98 EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred             EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence            1123334445555654   23567666688898888754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=84.78  E-value=6.5  Score=29.60  Aligned_cols=107  Identities=7%  Similarity=-0.009  Sum_probs=57.4

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCce-eeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-----
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDS-VVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-----   89 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~-~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-----   89 (134)
                      ++.|+.. .++.|+.||+.+.... .+..+.+..-.+...+.++|....++..+.     | |...++.+.....     
T Consensus       112 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----d-~~i~iwd~~~~~~~~~~~  185 (377)
T 3dwl_C          112 EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA-----D-RKAYVLSAYVRDVDAKPE  185 (377)
T ss_dssp             SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES-----S-SCEEEEEECCSSCC-CCC
T ss_pred             CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC-----C-CEEEEEEEEecccCCCcc
Confidence            4556665 8899999999985432 234454434557899999997765555432     3 4555665421110     


Q ss_pred             ----------ccccccCCccccceeEEEEeCC-eEEEEecCCEEEEEeCCC
Q psy74            90 ----------ERKEVADGKRSTGISAVWVARN-RFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        90 ----------~~~~~~~~~~g~g~~AvFVaRN-RfAvldk~~~i~Iknl~n  129 (134)
                                +..-..-...+...+..|-.-. .+|+-..+++|.|-|+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          186 ASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             SCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             ccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                      0000000223334445554443 466666688999988864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=84.76  E-value=8.3  Score=27.13  Aligned_cols=108  Identities=14%  Similarity=0.227  Sum_probs=60.2

Q ss_pred             cceeeCCEEEEEeCCeEEEEECCC-CCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcc
Q psy74            12 AYTVHNNVMYYVKERFLHRLDLTN-SKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESE   90 (134)
Q Consensus        12 a~~~~~n~L~Yvkek~l~~~D~~t-~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~   90 (134)
                      ++.-.+..|++..+..|+.||+.+ .....+.  .+.....+..+.++|....+++...    .+.+...|+.+......
T Consensus        48 ~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~----~~~~~~~l~~~~~~~~~  121 (297)
T 2ojh_A           48 NWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVD--TGFATICNNDHGISPDGALYAISDK----VEFGKSAIYLLPSTGGT  121 (297)
T ss_dssp             EECTTSSEEEEEETTEEEEEESSSCCSCEECC--CTTCCCBCSCCEECTTSSEEEEEEC----TTTSSCEEEEEETTCCC
T ss_pred             EECCCCCEEEEEcCCeEEEEeCCCCCCceEec--cccccccccceEECCCCCEEEEEEe----CCCCcceEEEEECCCCc
Confidence            344457778888999999999987 5543222  2322335677899998887777754    23356677766543221


Q ss_pred             cccccCCccccceeEEEEeCCe-EEEEe-cCCEEEEEeC
Q psy74            91 RKEVADGKRSTGISAVWVARNR-FAVLD-RNHTILIKNL  127 (134)
Q Consensus        91 ~~~~~~~~~g~g~~AvFVaRNR-fAvld-k~~~i~Iknl  127 (134)
                       ...-.. ........|-.-.+ +++.. .++++.|..+
T Consensus       122 -~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~  158 (297)
T 2ojh_A          122 -PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSM  158 (297)
T ss_dssp             -CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             -eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEE
Confidence             111101 11133344543344 44333 3666666664

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=84.55  E-value=9.8  Score=27.79  Aligned_cols=94  Identities=13%  Similarity=0.113  Sum_probs=53.9

Q ss_pred             eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccCCccccce
Q psy74            24 KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGI  103 (134)
Q Consensus        24 kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~~~~g~g~  103 (134)
                      .+..|+.||+.+.+  .+..+.| .-.+..+|.++|....++..+      ..|...++.+.....-    .....+...
T Consensus       193 ~d~~i~i~d~~~~~--~~~~~~~-h~~~v~~~~~s~~~~~l~s~s------~Dg~i~iwd~~~~~~~----~~~~~~~~v  259 (340)
T 4aow_A          193 WDKLVKVWNLANCK--LKTNHIG-HTGYLNTVTVSPDGSLCASGG------KDGQAMLWDLNEGKHL----YTLDGGDII  259 (340)
T ss_dssp             TTSCEEEEETTTTE--EEEEECC-CSSCEEEEEECTTSSEEEEEE------TTCEEEEEETTTTEEE----EEEECSSCE
T ss_pred             CCCEEEEEECCCCc--eeeEecC-CCCcEEEEEECCCCCEEEEEe------CCCeEEEEEeccCcee----eeecCCceE
Confidence            78899999998743  2333443 223678999999877655542      3346666655433110    001111234


Q ss_pred             eEEEEeCCe-EEEEecCCEEEEEeCCCc
Q psy74           104 SAVWVARNR-FAVLDRNHTILIKNLKNE  130 (134)
Q Consensus       104 ~AvFVaRNR-fAvldk~~~i~Iknl~n~  130 (134)
                      .++.+..++ +++-..+++|.|-|+++.
T Consensus       260 ~~~~~~~~~~~~~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          260 NALCFSPNRYWLCAATGPSIKIWDLEGK  287 (340)
T ss_dssp             EEEEECSSSSEEEEEETTEEEEEETTTT
T ss_pred             EeeecCCCCceeeccCCCEEEEEECCCC
Confidence            455555554 444444788888888653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=84.09  E-value=11  Score=27.81  Aligned_cols=104  Identities=10%  Similarity=0.021  Sum_probs=56.6

Q ss_pred             eCCEEEEE-eCC----eEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-
Q psy74            16 HNNVMYYV-KER----FLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-   89 (134)
Q Consensus        16 ~~n~L~Yv-kek----~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-   89 (134)
                      .++.|| + .+.    .|+.||+.+.+-...+.. +.   .|+.+.+.|...-++++..    .++....++.+..+.. 
T Consensus        94 dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~---~~~~~~~spdg~~l~~~~~----~~~~~i~~~~~~~~g~~  164 (331)
T 3u4y_A           94 DDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPI-PY---DAVGIAISPNGNGLILIDR----SSANTVRRFKIDADGVL  164 (331)
T ss_dssp             TSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEEC-CT---TEEEEEECTTSSCEEEEEE----TTTTEEEEEEECTTCCE
T ss_pred             CCCEEE-EecCCCCcccEEEEECCCCCeEEEEEC-CC---CccceEECCCCCEEEEEec----CCCceEEEEEECCCCcE
Confidence            355666 6 555    899999987554333322 22   4689999999887777654    2343255555443211 


Q ss_pred             ccccccCCccccceeEEEEeCC-e-EEEEec-CCEEEEEeCC
Q psy74            90 ERKEVADGKRSTGISAVWVARN-R-FAVLDR-NHTILIKNLK  128 (134)
Q Consensus        90 ~~~~~~~~~~g~g~~AvFVaRN-R-fAvldk-~~~i~Iknl~  128 (134)
                      ..........+.+..++-++.+ + +++.+. +++|.|-+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  206 (331)
T 3u4y_A          165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ  206 (331)
T ss_dssp             EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            0000000111223334444433 3 556665 7788888885

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=84.03  E-value=11  Score=28.08  Aligned_cols=100  Identities=10%  Similarity=0.194  Sum_probs=58.9

Q ss_pred             EEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCC--eEEEEeccCCCCCCceEEEEEccCCCccccccc
Q psy74            19 VMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEH--SILVTTRNANNFENSTYDLYMIPKEESERKEVA   95 (134)
Q Consensus        19 ~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~--~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~   95 (134)
                      .|.-. .++.|+.||+.+......+...+    +...+.+.|...  ..|++..     .+|...++.+.....  ...-
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~d~~~~~~--~~~~  182 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFNFEE----TVYSHHMSPVSTKHCLVAVGT-----RGPKVQLCDLKSGSC--SHIL  182 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECSS----CEEEEEECSSCSSCCEEEEEE-----SSSSEEEEESSSSCC--CEEE
T ss_pred             EEEEEeCCCeEEEeeCCCCccceeccCCC----ceeeeEeecCCCCCcEEEEEc-----CCCeEEEEeCCCcce--eeee
Confidence            34444 78999999999865554444332    456777777543  3444433     445667776543311  1111


Q ss_pred             CCccccceeEEEEeCCe--EEEEecCCEEEEEeCCC
Q psy74            96 DGKRSTGISAVWVARNR--FAVLDRNHTILIKNLKN  129 (134)
Q Consensus        96 ~~~~g~g~~AvFVaRNR--fAvldk~~~i~Iknl~n  129 (134)
                      ....+...+..|-...+  ||+-..+++|.|.|+..
T Consensus       183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~  218 (408)
T 4a11_B          183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR  218 (408)
T ss_dssp             CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred             cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence            23344445556655544  77777789999999853

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=83.96  E-value=13  Score=28.59  Aligned_cols=101  Identities=11%  Similarity=0.100  Sum_probs=56.5

Q ss_pred             EEEEE--eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccC
Q psy74            19 VMYYV--KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVAD   96 (134)
Q Consensus        19 ~L~Yv--kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~   96 (134)
                      .+++.  .|+.|+.||+.+..-  +..+.+ .-.+..++.++|....++..+      +.|+..++.+.....-..-..+
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~~~--~~~~~~-h~~~v~~v~~~p~~~~l~s~s------~D~~v~lwd~~~~~~~~~~~~~  281 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSGQC--VQAFET-HESDVNSVRYYPSGDAFASGS------DDATCRLYDLRADREVAIYSKE  281 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTCCE--EEEECC-CSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEEEEECCT
T ss_pred             CEEEEEeCCCeEEEEECCCCcE--EEEecC-CCCCeEEEEEeCCCCEEEEEe------CCCeEEEEECCCCcEEEEEcCC
Confidence            34443  899999999988542  333443 223678999999887665553      3456777765543110000011


Q ss_pred             CccccceeEEEEeCCeEEEE-ecCCEEEEEeCC
Q psy74            97 GKRSTGISAVWVARNRFAVL-DRNHTILIKNLK  128 (134)
Q Consensus        97 ~~~g~g~~AvFVaRNRfAvl-dk~~~i~Iknl~  128 (134)
                      .......+..|-...++++. ..+++|.|-|+.
T Consensus       282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence            11112334445444444444 347788888874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=83.73  E-value=13  Score=28.51  Aligned_cols=105  Identities=14%  Similarity=0.126  Sum_probs=59.3

Q ss_pred             eCCEEEEE--eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCC---------CCCceEEEEEc
Q psy74            16 HNNVMYYV--KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANN---------FENSTYDLYMI   84 (134)
Q Consensus        16 ~~n~L~Yv--kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~---------~d~g~yeL~~l   84 (134)
                      .++.||..  .+..|+.||+.+.+-...+.. +   ..+..+.+.|....+++.......         .+.|...++.+
T Consensus       313 ~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~  388 (433)
T 3bws_A          313 TENKIYVSDMCCSKIEVYDLKEKKVQKSIPV-F---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT  388 (433)
T ss_dssp             STTEEEEEETTTTEEEEEETTTTEEEEEEEC-S---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred             CCCEEEEEecCCCEEEEEECCCCcEEEEecC-C---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence            45678776  788999999997554333322 1   257899999998877776541000         01245555543


Q ss_pred             cCCCc-ccccccCCccccceeEEEEeC-C-eEEEEec-CCEEEEEeCCC
Q psy74            85 PKEES-ERKEVADGKRSTGISAVWVAR-N-RFAVLDR-NHTILIKNLKN  129 (134)
Q Consensus        85 pk~~~-~~~~~~~~~~g~g~~AvFVaR-N-RfAvldk-~~~i~Iknl~n  129 (134)
                      ..... ...   +.  +....++-++. . .+++-.. +++|.|-++++
T Consensus       389 ~~~~~~~~~---~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          389 TTDTVKEFW---EA--GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             TTTEEEEEE---EC--SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CCCcEEEEe---cC--CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            32211 111   11  22233444443 3 4556665 88999998864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=83.69  E-value=10  Score=27.25  Aligned_cols=100  Identities=11%  Similarity=0.119  Sum_probs=63.4

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccccc
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA   95 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~   95 (134)
                      ++.|+-. .+..|+.||.    ..++..+++....+...+.+.|... ++.. .     .+|...++.+.....  ...-
T Consensus       155 ~~~l~~~~~d~~i~i~d~----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~-----~dg~i~i~d~~~~~~--~~~~  221 (313)
T 3odt_A          155 ENKFLTASADKTIKLWQN----DKVIKTFSGIHNDVVRHLAVVDDGH-FISC-S-----NDGLIKLVDMHTGDV--LRTY  221 (313)
T ss_dssp             TTEEEEEETTSCEEEEET----TEEEEEECSSCSSCEEEEEEEETTE-EEEE-E-----TTSEEEEEETTTCCE--EEEE
T ss_pred             CCEEEEEECCCCEEEEec----CceEEEEeccCcccEEEEEEcCCCe-EEEc-c-----CCCeEEEEECCchhh--hhhh
Confidence            4555555 8899999993    3444555554555788999999887 3333 3     445677776553311  0011


Q ss_pred             CCccccceeEEEEeCCeEEEEecCCEEEEEeCCC
Q psy74            96 DGKRSTGISAVWVARNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        96 ~~~~g~g~~AvFVaRNRfAvldk~~~i~Iknl~n  129 (134)
                      ....+...+..|-..+++++-..+++|.|-|+++
T Consensus       222 ~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          222 EGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN  255 (313)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEETTSEEEEECTTT
T ss_pred             hcCCceEEEEEEecCCCEEEEecCCEEEEEECCC
Confidence            2334445556676666888888899999999854

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=83.61  E-value=14  Score=28.79  Aligned_cols=102  Identities=13%  Similarity=0.137  Sum_probs=64.9

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      +++.|+-. .++.|+.||+.+.+  ++..+.| ...+...+.++|....++..+      .+|...++.+.....  ...
T Consensus       279 ~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~sg~------~dg~i~vwd~~~~~~--~~~  347 (464)
T 3v7d_B          279 HGNIVVSGSYDNTLIVWDVAQMK--CLYILSG-HTDRIYSTIYDHERKRCISAS------MDTTIRIWDLENGEL--MYT  347 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTE--EEEEECC-CSSCEEEEEEETTTTEEEEEE------TTSCEEEEETTTTEE--EEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCc--EEEEecC-CCCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCcE--EEE
Confidence            45556665 89999999998643  3444443 334678999999877666553      335666665543211  001


Q ss_pred             cCCccccceeEEEEeCCeEEEEecCCEEEEEeCCC
Q psy74            95 ADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        95 ~~~~~g~g~~AvFVaRNRfAvldk~~~i~Iknl~n  129 (134)
                      -....+ ...++.+..+.++.-..+++|.|-|+..
T Consensus       348 ~~~h~~-~v~~~~~~~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          348 LQGHTA-LVGLLRLSDKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             ECCCSS-CEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred             EeCCCC-cEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence            112222 4556666778888888889999999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=83.41  E-value=9.9  Score=29.66  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             eCCeEEEEECCCCCceeeEEee--cCCCCCceEEEeccC-------CCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            24 KERFLHRLDLTNSKDSVVMQLR--GGGRIPAHSISYNAT-------EHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        24 kek~l~~~D~~t~~~~~~~slr--g~~~~~~~slsyNpa-------e~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      .|+.||.||..+........+.  ...--...++.++|.       +.-+|++..     +.++--|-.+.....  ...
T Consensus       109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s-----~D~tv~~Wd~~~~~~--~~~  181 (393)
T 4gq1_A          109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG-----DDCTLIIWRLTDEGP--ILA  181 (393)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE-----TTSEEEEEEEETTEE--EEE
T ss_pred             CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE-----CCCeEEEEECCCCce--eee
Confidence            6899999999886554444443  224446789999873       445666544     444666665543311  001


Q ss_pred             cCCccccceeEEEEe--CCeEEEEecCCEEEEEeCCC
Q psy74            95 ADGKRSTGISAVWVA--RNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        95 ~~~~~g~g~~AvFVa--RNRfAvldk~~~i~Iknl~n  129 (134)
                      .....+...+..|--  .+++|+-..+++|.|-|+..
T Consensus       182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence            123344567788863  45788888899999999853

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=83.05  E-value=12  Score=27.48  Aligned_cols=101  Identities=6%  Similarity=0.099  Sum_probs=60.5

Q ss_pred             EEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccCC
Q psy74            19 VMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADG   97 (134)
Q Consensus        19 ~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~~   97 (134)
                      .|+-. .++.|+.||+.+........+++ ...+...|.++|....++..+      .+|...++.+.....   .....
T Consensus        56 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~---~~~~~  125 (368)
T 3mmy_A           56 FLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTAS------CDKTAKMWDLSSNQA---IQIAQ  125 (368)
T ss_dssp             EEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEEE------TTSEEEEEETTTTEE---EEEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEEc------CCCcEEEEEcCCCCc---eeecc
Confidence            34444 78999999999844444344543 233688999999776666543      345666665543321   11112


Q ss_pred             ccccceeEEEE-e-C-CeEEEEecCCEEEEEeCCC
Q psy74            98 KRSTGISAVWV-A-R-NRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        98 ~~g~g~~AvFV-a-R-NRfAvldk~~~i~Iknl~n  129 (134)
                      ..+...+..|. . . +.|++-..+++|.|-|+..
T Consensus       126 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A          126 HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence            33445556662 3 3 2366666688999999853

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=83.03  E-value=12  Score=27.76  Aligned_cols=103  Identities=13%  Similarity=0.130  Sum_probs=63.9

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      .++.|+-. .|+.|+.||+.+.+  .+..++| .-...++|.++|....++..+      +.|+-.+..+.....- ...
T Consensus        66 ~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~-h~~~v~~~~~~~~~~~l~sgs------~D~~v~lWd~~~~~~~-~~~  135 (304)
T 2ynn_A           66 RKNWIIVGSDDFRIRVFNYNTGE--KVVDFEA-HPDYIRSIAVHPTKPYVLSGS------DDLTVKLWNWENNWAL-EQT  135 (304)
T ss_dssp             GGTEEEEEETTSEEEEEETTTCC--EEEEEEC-CSSCEEEEEECSSSSEEEEEE------TTSCEEEEEGGGTTEE-EEE
T ss_pred             CCCEEEEECCCCEEEEEECCCCc--EEEEEeC-CCCcEEEEEEcCCCCEEEEEC------CCCeEEEEECCCCcch-hhh
Confidence            34445544 88999999998854  3444553 223678999999887655442      3456777765433110 001


Q ss_pred             cCCccccceeEEEEe--CCeEEEEecCCEEEEEeCC
Q psy74            95 ADGKRSTGISAVWVA--RNRFAVLDRNHTILIKNLK  128 (134)
Q Consensus        95 ~~~~~g~g~~AvFVa--RNRfAvldk~~~i~Iknl~  128 (134)
                      -....+...+..|-.  .+.||.=..+++|.|-|+.
T Consensus       136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~  171 (304)
T 2ynn_A          136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG  171 (304)
T ss_dssp             ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred             hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            123444455566653  4578887778899999885

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=82.83  E-value=15  Score=28.75  Aligned_cols=102  Identities=14%  Similarity=0.006  Sum_probs=58.3

Q ss_pred             CEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccC
Q psy74            18 NVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVAD   96 (134)
Q Consensus        18 n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~   96 (134)
                      +.|+=. .|+.|+.||+.+..-..+..- ........++.++|....++..      ...|...++.+......   .-.
T Consensus       178 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g------~~dg~i~~wd~~~~~~~---~~~  247 (435)
T 4e54_B          178 NQFYASSMEGTTRLQDFKGNILRVFASS-DTINIWFCSLDVSASSRMVVTG------DNVGNVILLNMDGKELW---NLR  247 (435)
T ss_dssp             TEEEEECSSSCEEEEETTSCEEEEEECC-SSCSCCCCCEEEETTTTEEEEE------CSSSBEEEEESSSCBCC---CSB
T ss_pred             CEEEEEeCCCEEEEeeccCCceeEEecc-CCCCccEEEEEECCCCCEEEEE------eCCCcEeeeccCcceeE---EEe
Confidence            444444 899999999986432221111 2233346788999988766654      24456667665422111   122


Q ss_pred             CccccceeEEEE--eCCeEEEEecCCEEEEEeCCC
Q psy74            97 GKRSTGISAVWV--ARNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        97 ~~~g~g~~AvFV--aRNRfAvldk~~~i~Iknl~n  129 (134)
                      ...+...+..|-  +++-||.-..+++|.|-|+..
T Consensus       248 ~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          248 MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred             cccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence            334445555664  334566656688899988854

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=82.70  E-value=14  Score=28.12  Aligned_cols=60  Identities=13%  Similarity=0.193  Sum_probs=37.9

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP   85 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp   85 (134)
                      ++.|+-. .++.|+.||+.+.+..  ..+++ ...+...|.++|....++..+.      .|...++.+.
T Consensus       151 ~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~-h~~~v~~~~~~~~~~~l~s~~~------d~~v~iwd~~  211 (420)
T 3vl1_A          151 GEALISSSQDMQLKIWSVKDGSNP--RTLIG-HRATVTDIAIIDRGRNVLSASL------DGTIRLWECG  211 (420)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCCC--EEEEC-CSSCEEEEEEETTTTEEEEEET------TSCEEEEETT
T ss_pred             CCEEEEEeCCCeEEEEeCCCCcCc--eEEcC-CCCcEEEEEEcCCCCEEEEEcC------CCcEEEeECC
Confidence            4445554 8899999999875433  34443 2336789999998776665432      3455555544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=82.25  E-value=13  Score=27.51  Aligned_cols=105  Identities=10%  Similarity=0.124  Sum_probs=57.7

Q ss_pred             CEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCC-CeEEEEeccCCCCCCceEEEEEccCCCccccccc
Q psy74            18 NVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATE-HSILVTTRNANNFENSTYDLYMIPKEESERKEVA   95 (134)
Q Consensus        18 n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae-~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~   95 (134)
                      +.|.=. .|+.|+.||+.+..-..+..+.+ .-.+.+++.++|.+ ...|++..     ..|...++.+..........-
T Consensus        68 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~g~~l~s~s-----~d~~v~~wd~~~~~~~~~~~~  141 (297)
T 2pm7_B           68 TILASCSYDGKVMIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPMLLVAS-----SDGKVSVVEFKENGTTSPIII  141 (297)
T ss_dssp             SEEEEEETTTEEEEEEBSSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEE-----TTSEEEEEEBCSSSCBCCEEE
T ss_pred             CEEEEEcCCCEEEEEEcCCCceEEEEEeec-CCCceeEEEeCcCCCCcEEEEEE-----CCCcEEEEEecCCCceeeeee
Confidence            334444 79999999998765444555543 22367899999974 33444333     345677776654311100011


Q ss_pred             CCccccceeEEEEe--------------CCeEEEEecCCEEEEEeCC
Q psy74            96 DGKRSTGISAVWVA--------------RNRFAVLDRNHTILIKNLK  128 (134)
Q Consensus        96 ~~~~g~g~~AvFVa--------------RNRfAvldk~~~i~Iknl~  128 (134)
                      +...+...+..|-.              .+.+|.=..+++|.|-|++
T Consensus       142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~  188 (297)
T 2pm7_B          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN  188 (297)
T ss_dssp             ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEE
T ss_pred             ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEc
Confidence            12222233344432              2356666667788888774

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=82.17  E-value=8.5  Score=33.29  Aligned_cols=106  Identities=24%  Similarity=0.278  Sum_probs=65.2

Q ss_pred             CCEEEEEeCCeEEEEECCCCCcee-eEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc--
Q psy74            17 NNVMYYVKERFLHRLDLTNSKDSV-VMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE--   93 (134)
Q Consensus        17 ~n~L~Yvkek~l~~~D~~t~~~~~-~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~--   93 (134)
                      +..|+|.....|+..++.+..... ++++.  ....|..|.|++.+..|.++..     .++  .++.+..+.++...  
T Consensus       317 ~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~--~l~~~~~ld~d~~~~~ly~sD~-----~~~--~I~r~~~~g~~~~~v~  387 (619)
T 3s94_A          317 TELLLLARRTDLRRISLDTPDFTDIVLQLE--DIRHAIAIDYDPVEGYIYWTDD-----EVR--AIRRSFIDGSGSQFVV  387 (619)
T ss_dssp             SEEEEEEESSCEEEEESSSTTCCCEECCCS--CCSSEEEEEEETTTTEEEEEET-----TTT--EEEEEETTSCSCEEEE
T ss_pred             ceEEEEEcccceEEEecCCCccceeEEecc--ccCccEEEEEEcCCCeEEEEeC-----CCC--eEEEEEcCCCccEEEE
Confidence            346888888999999998744322 23333  2345789999999998888743     222  34433333221100  


Q ss_pred             ccCCccccceeEEEEeCCeEEEEec-CCEEEEEeCCCceE
Q psy74            94 VADGKRSTGISAVWVARNRFAVLDR-NHTILIKNLKNEFC  132 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~n~~~  132 (134)
                      ..+...-.|++.=|++||=|.. |. +++|++-+++++..
T Consensus       388 ~~~~~~p~GlAvD~~~~~lY~t-D~~~~~I~v~~~~G~~~  426 (619)
T 3s94_A          388 TAQIAHPDGIAVDWVARNLYWT-DTGTDRIEVTRLNGTMR  426 (619)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEE-ETTTTEEEEEETTSCSC
T ss_pred             ECCCCCcCceEEecccCcEEEE-eCCCCcEEEEeCCCCeE
Confidence            1111223477766777776655 65 88999999987643

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=81.57  E-value=12  Score=26.77  Aligned_cols=106  Identities=15%  Similarity=0.165  Sum_probs=58.2

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeEEee----------cCCCCCceEEEeccC---CCeEEEEeccCCCCCCceEEEE
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLR----------GGGRIPAHSISYNAT---EHSILVTTRNANNFENSTYDLY   82 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slr----------g~~~~~~~slsyNpa---e~~vLv~~~~~~~~d~g~yeL~   82 (134)
                      ++.|+-. .++.|+.||+.+......+.+.          .........+.++|.   ...+++.+.     |+ .. ++
T Consensus       124 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~-~~-~~  196 (351)
T 3f3f_A          124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL-----EQ-AI-IY  196 (351)
T ss_dssp             CSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET-----TE-EE-EE
T ss_pred             CcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC-----CC-cE-EE
Confidence            4455555 8899999999885533222221          123446788999987   444444432     33 23 33


Q ss_pred             EccCCCc-ccccccCCccccceeEEEEeC-----CeEEEEecCCEEEEEeCCC
Q psy74            83 MIPKEES-ERKEVADGKRSTGISAVWVAR-----NRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        83 ~lpk~~~-~~~~~~~~~~g~g~~AvFVaR-----NRfAvldk~~~i~Iknl~n  129 (134)
                      ....... .....-....+...+..|-.-     +.+|.-..+++|.|-|+..
T Consensus       197 ~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          197 QRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             EECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             EccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            2222221 001112234444445555544     3567766789999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=81.43  E-value=17  Score=28.17  Aligned_cols=104  Identities=6%  Similarity=0.051  Sum_probs=62.3

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeEEee-cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLR-GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slr-g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      ++.|.-. .++.|+.||+.+++........ ...-.+.++|.++|...-++..+      ..|+..+..+.....  ...
T Consensus        93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs------~d~~i~iwd~~~~~~--~~~  164 (344)
T 4gqb_B           93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS------KDICIKVWDLAQQVV--LSS  164 (344)
T ss_dssp             TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEE--EEE
T ss_pred             CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe------CCCeEEEEECCCCcE--EEE
Confidence            3445544 8899999999986655444433 12334689999999877655542      334666665543211  001


Q ss_pred             cCCccccceeEEEEeC--CeEEEEecCCEEEEEeCC
Q psy74            95 ADGKRSTGISAVWVAR--NRFAVLDRNHTILIKNLK  128 (134)
Q Consensus        95 ~~~~~g~g~~AvFVaR--NRfAvldk~~~i~Iknl~  128 (134)
                      -.++.+...+..|-..  +.||.-..+++|.|-|+.
T Consensus       165 ~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~  200 (344)
T 4gqb_B          165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR  200 (344)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             EcCcCCceEEEEecCCCCCceeeecccccccccccc
Confidence            1234444455556433  356666668889999885

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=81.31  E-value=7.7  Score=29.19  Aligned_cols=105  Identities=13%  Similarity=0.065  Sum_probs=54.9

Q ss_pred             CCEEEEE-eCCeEEEEECCCCC-ceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-cccc
Q psy74            17 NNVMYYV-KERFLHRLDLTNSK-DSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERKE   93 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~-~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~~   93 (134)
                      ++.|.-. .++.|+.||+.+.. -.+...+.+ .-.+...+.++|....++..+.     | |...++.+..... ....
T Consensus        67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-----d-~~i~iwd~~~~~~~~~~~  139 (377)
T 3dwl_C           67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR-LNRAATFVRWSPNEDKFAVGSG-----A-RVISVCYFEQENDWWVSK  139 (377)
T ss_dssp             TCCEEEEETTSSEEEC------CCCCEEECCC-CSSCEEEEECCTTSSCCEEEES-----S-SCEEECCC-----CCCCE
T ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeeeeEecc-cCCceEEEEECCCCCEEEEEec-----C-CeEEEEEECCcccceeee
Confidence            4455555 78999999999855 334455543 2336789999997776665533     3 3455544332211 0011


Q ss_pred             ccCC-ccccceeEEEEeCC-eEEEEecCCEEEEEeCC
Q psy74            94 VADG-KRSTGISAVWVARN-RFAVLDRNHTILIKNLK  128 (134)
Q Consensus        94 ~~~~-~~g~g~~AvFVaRN-RfAvldk~~~i~Iknl~  128 (134)
                      .-.. ..+...+..|-.-. .+|+-..+++|.|-|+.
T Consensus       140 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          140 HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred             EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence            1112 44444555555443 46666668899999984

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=81.26  E-value=16  Score=27.71  Aligned_cols=103  Identities=10%  Similarity=0.274  Sum_probs=59.9

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      .++.|.-. .+..|+.||+.+.+  .+..++| .-.+.++|.++|....++..      .+.|...++.+.....  ...
T Consensus       175 dg~~lasg~~dg~i~iwd~~~~~--~~~~~~~-h~~~v~~l~~spd~~~l~s~------s~dg~i~iwd~~~~~~--~~~  243 (321)
T 3ow8_A          175 DGKYLASGAIDGIINIFDIATGK--LLHTLEG-HAMPIRSLTFSPDSQLLVTA------SDDGYIKIYDVQHANL--AGT  243 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTE--EEEEECC-CSSCCCEEEECTTSCEEEEE------CTTSCEEEEETTTCCE--EEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCc--EEEEEcc-cCCceeEEEEcCCCCEEEEE------cCCCeEEEEECCCcce--eEE
Confidence            34455555 88999999998753  3444553 23367899999977654443      2445677776543211  001


Q ss_pred             cCCccccceeEEEEeCC-eEEEEecCCEEEEEeCCC
Q psy74            95 ADGKRSTGISAVWVARN-RFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        95 ~~~~~g~g~~AvFVaRN-RfAvldk~~~i~Iknl~n  129 (134)
                      -....+...+..|-.-. .+|.-..+++|.|-|+..
T Consensus       244 ~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          244 LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence            12333334445554433 455555588899988864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=80.93  E-value=27  Score=30.23  Aligned_cols=108  Identities=8%  Similarity=0.170  Sum_probs=64.9

Q ss_pred             CCEEEEEeCCeEEEEECCCCCc-eeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc-c
Q psy74            17 NNVMYYVKERFLHRLDLTNSKD-SVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE-V   94 (134)
Q Consensus        17 ~n~L~Yvkek~l~~~D~~t~~~-~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~-~   94 (134)
                      ...|+|.....|+.+.+..... ..++++.  ....+..|.|++.+..|.++..     .++..  +.+..+.+.... .
T Consensus       308 ~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~--~~~~~~~ld~d~~~~~iy~sD~-----~~~~I--~r~~~~g~~~~~v~  378 (628)
T 4a0p_A          308 TTFLLFSQKSAINRMVIDEQQSPDIILPIH--SLRNVRAIDYDPLDKQLYWIDS-----RQNMI--RKAQEDGSQGFTVV  378 (628)
T ss_dssp             SSEEEEEETTEEEEECCCTTCCCCEECCCT--TCSCEEEEEEETTTTEEEEEET-----TTTEE--EEEETTSCSCEEEE
T ss_pred             cceeeeeccceEEEEecccccCceEEEEeh--hcCCceEEEEecCCCeEEEEec-----CcceE--EEEEcCCCCceEEE
Confidence            5679999999999998875322 1222232  2335788999999998877643     22222  222112111000 0


Q ss_pred             c-------CCccccceeEEEEeCCeEEEEecCCEEEEEeCCCceEe
Q psy74            95 A-------DGKRSTGISAVWVARNRFAVLDRNHTILIKNLKNEFCT  133 (134)
Q Consensus        95 ~-------~~~~g~g~~AvFVaRNRfAvldk~~~i~Iknl~n~~~K  133 (134)
                      .       ...+-.|++.=|++||=|.+=..++.|++-+++++..+
T Consensus       379 ~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~  424 (628)
T 4a0p_A          379 VSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVG  424 (628)
T ss_dssp             C--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEE
T ss_pred             EcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEE
Confidence            0       11123588888899987776334889999999887654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=80.81  E-value=18  Score=28.06  Aligned_cols=104  Identities=13%  Similarity=0.179  Sum_probs=57.1

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-ccc--
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERK--   92 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~--   92 (134)
                      ++.|+-. .|+.++.||+.+......+...+    ....+.+.|.+...|++..     ..|...++.+..... ...  
T Consensus       177 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~s-----~d~~v~iwd~~~~~~~~~~~~  247 (393)
T 1erj_A          177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIED----GVTTVAVSPGDGKYIAAGS-----LDRAVRVWDSETGFLVERLDS  247 (393)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECSS----CEEEEEECSTTCCEEEEEE-----TTSCEEEEETTTCCEEEEEC-
T ss_pred             CCEEEEecCCCcEEEEECCCCeeEEEEEcCC----CcEEEEEECCCCCEEEEEc-----CCCcEEEEECCCCcEEEeecc
Confidence            4455555 89999999998754333332222    4678899997666666544     334556655432211 000  


Q ss_pred             --cccCCccccceeEEEEeCCe-EEEEecCCEEEEEeCCC
Q psy74            93 --EVADGKRSTGISAVWVARNR-FAVLDRNHTILIKNLKN  129 (134)
Q Consensus        93 --~~~~~~~g~g~~AvFVaRNR-fAvldk~~~i~Iknl~n  129 (134)
                        .......+.-.+..|-.-.+ +|.-..+++|.|-|+.+
T Consensus       248 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             -----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence              00123333344555554444 55555588999998864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=80.66  E-value=18  Score=28.17  Aligned_cols=102  Identities=12%  Similarity=0.143  Sum_probs=58.6

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccc-cc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESER-KE   93 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~-~~   93 (134)
                      +++.|+-. .+..|+.||+.+.+.  +..+++ ...+...+.+++.   .|++..     ..|...++.+....... ..
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~-h~~~v~~l~~~~~---~l~s~s-----~dg~i~vwd~~~~~~~~~~~  250 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEM--LNTLIH-HCEAVLHLRFNNG---MMVTCS-----KDRSIAVWDMASPTDITLRR  250 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCE--EEEECC-CCSCEEEEECCTT---EEEEEE-----TTSCEEEEECSSSSCCEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcE--EEEEcC-CCCcEEEEEEcCC---EEEEee-----CCCcEEEEeCCCCCCceeee
Confidence            34444444 788899999987543  333442 2335678888753   344333     34566666655432210 01


Q ss_pred             ccCCccccceeEEEEeCCeEEEEecCCEEEEEeCCC
Q psy74            94 VADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVaRNRfAvldk~~~i~Iknl~n  129 (134)
                      ......+...+..| ..+.+|+-..+++|.|-|++.
T Consensus       251 ~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~  285 (435)
T 1p22_A          251 VLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTST  285 (435)
T ss_dssp             EECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTT
T ss_pred             EecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCc
Confidence            12233443444445 788888888888999999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=80.57  E-value=16  Score=27.47  Aligned_cols=66  Identities=5%  Similarity=0.121  Sum_probs=43.0

Q ss_pred             eCCEEEEEe--CCeEEEEECCCCCceeeEEee--cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74            16 HNNVMYYVK--ERFLHRLDLTNSKDSVVMQLR--GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP   85 (134)
Q Consensus        16 ~~n~L~Yvk--ek~l~~~D~~t~~~~~~~slr--g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp   85 (134)
                      .+..||...  +..|+.||+.+..-..+..+.  ......++.+.+.|...-+.++..    .+.+...++.+.
T Consensus       221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~----~~~~~i~v~~~~  290 (361)
T 3scy_A          221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR----LKADGVAIFKVD  290 (361)
T ss_dssp             TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC----SSSCEEEEEEEC
T ss_pred             CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC----CCCCEEEEEEEc
Confidence            344566664  688999999865444444444  223345789999999887777644    215567777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.87
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.22
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	94.08
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	93.94
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	92.68
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	91.22
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	89.35
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	87.85
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	87.33
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	86.97
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	86.58
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	85.78
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	85.64
d1tbga_	340	beta1-subunit of the signal-transducing G protein	83.47
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	82.68
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	80.82

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.33  Score=33.02  Aligned_cols=106  Identities=5%  Similarity=-0.055  Sum_probs=59.7

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCce-eeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDS-VVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE   93 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~-~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~   93 (134)
                      .++.|.=. .|+.||.||+.+.... .+....+ .-.+...+.++|.+...|++..    .| |.-.+..+.........
T Consensus        22 ~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-h~~~V~~v~f~~~~~~~l~sg~----~d-~~v~~w~~~~~~~~~~~   95 (342)
T d1yfqa_          22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGT----VQ-GEILKVDLIGSPSFQAL   95 (342)
T ss_dssp             GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEE----TT-SCEEEECSSSSSSEEEC
T ss_pred             CCCEEEEEECCCeEEEEEccCCCcceEEEEecC-CCCCEEEEEEeCCCCCEEEEcc----cc-cceeeeecccccccccc
Confidence            45555554 8999999999885433 3332222 3337889999998887777655    34 45555544433221110


Q ss_pred             ccCCccccceeEEEEeCCeEEEEecCCEEEEEeC
Q psy74            94 VADGKRSTGISAVWVARNRFAVLDRNHTILIKNL  127 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVaRNRfAvldk~~~i~Iknl  127 (134)
                      ..............-..+.++.....+++.|-|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~  129 (342)
T d1yfqa_          96 TNNEANLGICRICKYGDDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECH
T ss_pred             cccccccccccccccccccccccccccccceeec
Confidence            1111111223334445566666666777777765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.52  Score=33.77  Aligned_cols=107  Identities=15%  Similarity=0.104  Sum_probs=58.4

Q ss_pred             eCCEEEEEeCCeEEEEECCCCC-ceeeEEee-cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc
Q psy74            16 HNNVMYYVKERFLHRLDLTNSK-DSVVMQLR-GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE   93 (134)
Q Consensus        16 ~~n~L~Yvkek~l~~~D~~t~~-~~~~~slr-g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~   93 (134)
                      .+..|+=.-|+.|+.||+.+.. ..++..+. ...-.+.++|.++|....+++.+      +.|...++.+.........
T Consensus        62 ~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~------~dg~i~iwd~~~~~~~~~~  135 (337)
T d1gxra_          62 PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG------EASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE------SSSEEEEEECCCC--EEEE
T ss_pred             CCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee------ccccccccccccccccccc
Confidence            3445555578899999999843 33444444 33444678999999887665542      3356666665433210000


Q ss_pred             ccCCccccceeEEEEeCC--eEEEEecCCEEEEEeCCC
Q psy74            94 VADGKRSTGISAVWVARN--RFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVaRN--RfAvldk~~~i~Iknl~n  129 (134)
                      .-........ .+.+..+  .+|.-...++|.+.++.+
T Consensus       136 ~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_         136 ELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             EEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccccccccc-ccccccccccccccccccccccccccc
Confidence            0112222222 3333433  334444577788888754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.08  E-value=0.45  Score=32.95  Aligned_cols=104  Identities=7%  Similarity=0.069  Sum_probs=57.8

Q ss_pred             CCEEEEE-eCCeEEEEECCCCCceee-EEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            17 NNVMYYV-KERFLHRLDLTNSKDSVV-MQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        17 ~n~L~Yv-kek~l~~~D~~t~~~~~~-~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      +..|+-. .+..++.||+.+...... ..+.+ ...+.+.|.++|....++..+.     | |...++.+..........
T Consensus       191 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~sgs~-----d-g~i~iwd~~~~~~~~~~~  263 (299)
T d1nr0a2         191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTF-HTAKVACVSWSPDNVRLATGSL-----D-NSVIVWNMNKPSDHPIII  263 (299)
T ss_dssp             SSEEEEEETTSCEEEEEGGGTTEESCCCCCCC-CSSCEEEEEECTTSSEEEEEET-----T-SCEEEEETTCTTSCCEEE
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccccccccccceEEEcC-----C-CEEEEEECCCCCcceEEE
Confidence            3444444 788999999987544322 22222 3346789999998776665432     4 466666654432211111


Q ss_pred             cCCccccceeEEEEe-CCeEEEEecCCEEEEEeC
Q psy74            95 ADGKRSTGISAVWVA-RNRFAVLDRNHTILIKNL  127 (134)
Q Consensus        95 ~~~~~g~g~~AvFVa-RNRfAvldk~~~i~Iknl  127 (134)
                      ..........+++.. -+.++.-..+++|.|=||
T Consensus       264 ~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         264 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             TTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             ecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence            112222344555544 445555555788998876

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.94  E-value=0.37  Score=35.29  Aligned_cols=107  Identities=11%  Similarity=0.132  Sum_probs=59.1

Q ss_pred             eeCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc
Q psy74            15 VHNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE   93 (134)
Q Consensus        15 ~~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~   93 (134)
                      -.+..|... .++.|+.||..+++-..+..++| ...+.++|.++|..+-++..+.     | |.--+..+....-...-
T Consensus        17 ~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s~-----D-~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          17 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGT-----D-RNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             TTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEET-----T-SCEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCCEEEEEEC-----C-CeEEEEeeccccccccc
Confidence            355566666 77899999998876666667775 3447899999998876555432     3 34444433221100000


Q ss_pred             ccCCccccceeEEEEeCCe-EEEEecCCEEEEEeCC
Q psy74            94 VADGKRSTGISAVWVARNR-FAVLDRNHTILIKNLK  128 (134)
Q Consensus        94 ~~~~~~g~g~~AvFVaRNR-fAvldk~~~i~Iknl~  128 (134)
                      ......+...+..|-..++ ||+-..+++|.|.+++
T Consensus        90 ~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~  125 (371)
T d1k8kc_          90 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE  125 (371)
T ss_dssp             ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred             ccccccccccccccccccccceeecccCcceeeeee
Confidence            0112222233444543333 4444456677776653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=1.1  Score=31.82  Aligned_cols=101  Identities=12%  Similarity=0.113  Sum_probs=61.3

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      .++.++.. .++.++.||+.+.+........+    ++.+|.++|....+++.+      ++|...++.+.....-   .
T Consensus       194 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~----~i~~l~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~---~  260 (337)
T d1gxra_         194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS----QIFSLGYCPTGEWLAVGM------ESSNVEVLHVNKPDKY---Q  260 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTTEEEEEEECSS----CEEEEEECTTSSEEEEEE------TTSCEEEEETTSSCEE---E
T ss_pred             cccccccccccccccccccccceeeccccccc----ceEEEEEcccccccceec------cccccccccccccccc---c
Confidence            44556665 88999999998765333222222    578899999888777653      3456667665433211   1


Q ss_pred             cCCccccceeEEEEeCC-eEEEEecCCEEEEEeCCC
Q psy74            95 ADGKRSTGISAVWVARN-RFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        95 ~~~~~g~g~~AvFVaRN-RfAvldk~~~i~Iknl~n  129 (134)
                      .....+...+..|-.-+ .||.-..+++|.|-|++.
T Consensus       261 ~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccccccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            12333444555554443 455555678899988853

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.22  E-value=1.5  Score=30.06  Aligned_cols=104  Identities=11%  Similarity=0.144  Sum_probs=58.7

Q ss_pred             CEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-cccccc
Q psy74            18 NVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERKEVA   95 (134)
Q Consensus        18 n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~~~~   95 (134)
                      +.|... .+..|+.||+.+.....+..+.  .-.++..+.++|....++..+      .+|...++.+..... .....-
T Consensus       149 ~~l~~g~~dg~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~------~d~~i~~~~~~~~~~~~~~~~~  220 (299)
T d1nr0a2         149 QFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATD------QSRKVIPYSVANNFELAHTNSW  220 (299)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEEEEEEEE--CSSCEEEEEECTTSSEEEEEE------TTSCEEEEEGGGTTEESCCCCC
T ss_pred             ccccccccccccccccccccccccccccc--ccccccccccccccccccccc------cccccccccccccccccccccc
Confidence            334443 8899999999875543333333  122578899999777665543      334666766554321 111111


Q ss_pred             CCccccceeEEEEeCCe-EEEEecCCEEEEEeCCC
Q psy74            96 DGKRSTGISAVWVARNR-FAVLDRNHTILIKNLKN  129 (134)
Q Consensus        96 ~~~~g~g~~AvFVaRNR-fAvldk~~~i~Iknl~n  129 (134)
                      ....+.-.+..|-.-++ +|+-..+++|.|-|++.
T Consensus       221 ~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         221 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             cccccccccccccccccceEEEcCCCEEEEEECCC
Confidence            12233334445655554 44445578899998863

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.35  E-value=2.8  Score=30.25  Aligned_cols=106  Identities=13%  Similarity=0.074  Sum_probs=63.8

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-cccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERKE   93 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~~   93 (134)
                      .++.|.=. .|+.++.||+.+..-.+...+.+ .-.++..+.|+|..+.+++.+.      ++...++.+..... ....
T Consensus        62 ~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~l~~~s~------d~~i~i~~~~~~~~~~~~~  134 (371)
T d1k8kc_          62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPNEKKFAVGSG------SRVISICYFEQENDWWVCK  134 (371)
T ss_dssp             TTTEEEEEETTSCEEEEEEETTEEEEEEECCC-CSSCEEEEEECTTSSEEEEEET------TSSEEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECCCeEEEEeeccccccccccccc-ccccccccccccccccceeecc------cCcceeeeeeccccccccc
Confidence            35555545 88999999998766555555543 2336789999999988777644      34566665554422 1111


Q ss_pred             -ccCCccccceeEEEEeC-CeEEEEecCCEEEEEeCC
Q psy74            94 -VADGKRSTGISAVWVAR-NRFAVLDRNHTILIKNLK  128 (134)
Q Consensus        94 -~~~~~~g~g~~AvFVaR-NRfAvldk~~~i~Iknl~  128 (134)
                       .....++...+..|-.- ..||+-..+++|.|-++.
T Consensus       135 ~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~  171 (371)
T d1k8kc_         135 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY  171 (371)
T ss_dssp             EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccccccccccceeccccCcEEEEEeec
Confidence             11233333444555332 345555567888888764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.85  E-value=3.4  Score=29.40  Aligned_cols=107  Identities=11%  Similarity=0.028  Sum_probs=62.1

Q ss_pred             eCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74            16 HNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV   94 (134)
Q Consensus        16 ~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~   94 (134)
                      .++.|.-. .++.|+.||+.+........+++. -.+...|.++|...-++++..    .......+..+.....-  ..
T Consensus        69 ~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~d~~~l~~~~~----~~~~~~~v~~~~~~~~~--~~  141 (311)
T d1nr0a1          69 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF-SGPVKDISWDSESKRIAAVGE----GRERFGHVFLFDTGTSN--GN  141 (311)
T ss_dssp             TSSEEEEEETTSEEEEEESSSTTCCEEEEEECS-SSCEEEEEECTTSCEEEEEEC----CSSCSEEEEETTTCCBC--BC
T ss_pred             CCCeEeccccCceEeeeeeeccccccccccccc-cCccccccccccccccccccc----ccccccccccccccccc--cc
Confidence            44555444 899999999998666555556531 236789999998877776644    22234455555432110  01


Q ss_pred             cCCccccceeEEEEeCC--eEEEEecCCEEEEEeCCC
Q psy74            95 ADGKRSTGISAVWVARN--RFAVLDRNHTILIKNLKN  129 (134)
Q Consensus        95 ~~~~~g~g~~AvFVaRN--RfAvldk~~~i~Iknl~n  129 (134)
                      -..+.+.-.+..|-.-+  .||.=..+++|.|.|++.
T Consensus       142 l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~  178 (311)
T d1nr0a1         142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP  178 (311)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred             ccccccccccccccccceeeecccccccccccccccc
Confidence            12333334445564223  344444577888888864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.33  E-value=4  Score=29.62  Aligned_cols=108  Identities=7%  Similarity=0.022  Sum_probs=60.0

Q ss_pred             eCCEEEEE--eCCeEEEEECCCCCceeeEEee---cCCCCCceEEEeccCCCeEEEEeccCCCCCC--ceEEEEEccC--
Q psy74            16 HNNVMYYV--KERFLHRLDLTNSKDSVVMQLR---GGGRIPAHSISYNATEHSILVTTRNANNFEN--STYDLYMIPK--   86 (134)
Q Consensus        16 ~~n~L~Yv--kek~l~~~D~~t~~~~~~~slr---g~~~~~~~slsyNpae~~vLv~~~~~~~~d~--g~yeL~~lpk--   86 (134)
                      ..+.++.+  .|+.|+.||+.+.+........   -..-.+.++|.|.|....++..+.     |+  +...|+.+..  
T Consensus       193 s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~-----D~t~~~i~lwd~~~g~  267 (393)
T d1sq9a_         193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD-----SNSFGCITLYETEFGE  267 (393)
T ss_dssp             CTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE-----ETTEEEEEEEETTTCC
T ss_pred             CCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecC-----CCCcceeeecccccce
Confidence            33435555  8899999999986544333322   113346899999998877666544     33  2344433221  


Q ss_pred             -------CCc--ccccccCCccccceeEEEEeCCeEEE-EecCCEEEEEeCC
Q psy74            87 -------EES--ERKEVADGKRSTGISAVWVARNRFAV-LDRNHTILIKNLK  128 (134)
Q Consensus        87 -------~~~--~~~~~~~~~~g~g~~AvFVaRNRfAv-ldk~~~i~Iknl~  128 (134)
                             ...  .......++.+.-.+..|-.-+++.+ =..+++|.|=|++
T Consensus       268 ~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         268 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             eeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence                   100  11111224555455666655545544 4448899999985

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.97  E-value=4  Score=29.29  Aligned_cols=102  Identities=10%  Similarity=0.176  Sum_probs=61.8

Q ss_pred             EEEEEeCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc---cccc--
Q psy74            19 VMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES---ERKE--   93 (134)
Q Consensus        19 ~L~Yvkek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~---~~~~--   93 (134)
                      .|+|.....||.+|+.++....+.  .  ....+..|.|++.++.+-.+..    .++   .++...-+..   +..+  
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~--~--~~~~~~~id~d~~~~~lYw~D~----~~~---~I~~~~l~~~~~~~~~~~~   71 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLI--P--NLRNVVALDTEVASNRIYWSDL----SQR---MICSTQLDRAHGVSSYDTV   71 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEE--C--SCSSEEEEEEETTTTEEEEEET----TTT---EEEEEEC--------CEEE
T ss_pred             EEEEECCCeEEEEECCCCcceeee--C--CCCceEEEEEEeCCCEEEEEEC----CCC---EEEEEEecCCCCCcceEEE
Confidence            589998899999999986655553  2  2235788999999998876533    222   2322221111   1111  


Q ss_pred             -ccCCccccceeEEEEeCCeEEEEec-CCEEEEEeCCCceE
Q psy74            94 -VADGKRSTGISAVWVARNRFAVLDR-NHTILIKNLKNEFC  132 (134)
Q Consensus        94 -~~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~n~~~  132 (134)
                       ......-.|++.=|+++|=|. .|. .++|.+.++++.-.
T Consensus        72 ~~~~~~~p~glAvD~~~~~lY~-~d~~~~~I~v~~~~g~~~  111 (266)
T d1ijqa1          72 ISRDIQAPDGLAVDWIHSNIYW-TDSVLGTVSVADTKGVKR  111 (266)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSSSE
T ss_pred             EeCCCCCcceEEEeeccceEEE-EecCCCEEEeEecCCceE
Confidence             011122235655588888655 566 88999999987643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=86.58  E-value=3.5  Score=28.19  Aligned_cols=61  Identities=13%  Similarity=0.152  Sum_probs=39.8

Q ss_pred             EEEEE---eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74            19 VMYYV---KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP   85 (134)
Q Consensus        19 ~L~Yv---kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp   85 (134)
                      ++-||   .+..|+.||+.+.....+++.-... -+++.|.++|..+.+.++..     +.+...++.+.
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~-~~v~~la~spDG~~L~v~~~-----~d~~i~~~~i~   67 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVP-GQVQPMVVSPDKRYLYVGVR-----PEFRVLAYRIA   67 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS-SCCCCEEECTTSSEEEEEET-----TTTEEEEEEEC
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCC-CCEeEEEEeCCCCEEEEEEC-----CCCeEEEEEEe
Confidence            45566   6788999999976555554433111 25789999999888777654     33455555544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=85.78  E-value=2.9  Score=28.55  Aligned_cols=57  Identities=12%  Similarity=0.134  Sum_probs=38.3

Q ss_pred             CcceeeCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEec
Q psy74            11 PAYTVHNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTR   69 (134)
Q Consensus        11 Pa~~~~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~   69 (134)
                      ||++-.+..|+-. .+..|+.||+.+.+-...+.+-+  -..|..|.+.|...-++|+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~--~~~p~~l~~spDG~~l~v~~~   59 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNN   59 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEET
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC--CCCcceEEECCCCCEEEEEEC
Confidence            5666555555555 88999999999865444444431  124789999998887777643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.64  E-value=3.7  Score=27.68  Aligned_cols=107  Identities=17%  Similarity=0.199  Sum_probs=59.0

Q ss_pred             ceeeCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccc
Q psy74            13 YTVHNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESER   91 (134)
Q Consensus        13 ~~~~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~   91 (134)
                      ++..++.|+=- .|+.|+.||+.+.+  .+..++| .-.+.+.|.+.|. + .|++..    .| |+..+..+.......
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~~~~--~~~~l~~-H~~~V~~l~~s~~-~-~l~s~s----~D-~~i~iw~~~~~~~~~   88 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSINKK--FLLQLSG-HDGGVWALKYAHG-G-ILVSGS----TD-RTVRVWDIKKGCCTH   88 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTTTE--EEEEEEC-CSSCEEEEEEETT-T-EEEEEE----TT-CCEEEEETTTTEEEE
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCc--EEEEEEC-CCCCEEEEEEcCC-C-EEEEEe----cc-ccccccccccccccc
Confidence            45567755544 89999999998753  5566664 2236789999884 3 455544    34 455555544332110


Q ss_pred             ccccCCccccceeEEEEeCCeEE-EEecCCEEEEEeCCC
Q psy74            92 KEVADGKRSTGISAVWVARNRFA-VLDRNHTILIKNLKN  129 (134)
Q Consensus        92 ~~~~~~~~g~g~~AvFVaRNRfA-vldk~~~i~Iknl~n  129 (134)
                      ..........+...+|-...++. .-..+++|.|-++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~  127 (355)
T d1nexb2          89 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK  127 (355)
T ss_dssp             EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC
T ss_pred             ccccccccccccccccccccceeeeecCCCcEEEEEccC
Confidence            00111111223334444444444 444588898888753

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.47  E-value=4.8  Score=27.16  Aligned_cols=95  Identities=9%  Similarity=0.128  Sum_probs=53.2

Q ss_pred             eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccCCccccce
Q psy74            24 KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGI  103 (134)
Q Consensus        24 kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~~~~g~g~  103 (134)
                      .+..++.||+.+.+  ++..+.+ .-.+..++.++|....++..+      .+|...++.+.....-.. ........+.
T Consensus       204 ~d~~v~i~d~~~~~--~~~~~~~-h~~~i~~v~~~p~~~~l~s~s------~d~~i~~~~~~~~~~~~~-~~~~~~~~~i  273 (340)
T d1tbga_         204 CDASAKLWDVREGM--CRQTFTG-HESDINAICFFPNGNAFATGS------DDATCRLFDLRADQELMT-YSHDNIICGI  273 (340)
T ss_dssp             TTTEEEEEETTTTE--EEEEECC-CSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTTTEEEEE-ECCTTCCSCE
T ss_pred             cCceEEEEECCCCc--EEEEEeC-CCCCeEEEEECCCCCEEEEEe------CCCeEEEEeecccccccc-cccccccCce
Confidence            78899999998643  4445553 233678999999887666553      334556665543321000 0111111233


Q ss_pred             eEEEEeC-CeE-EEEecCCEEEEEeCC
Q psy74           104 SAVWVAR-NRF-AVLDRNHTILIKNLK  128 (134)
Q Consensus       104 ~AvFVaR-NRf-Avldk~~~i~Iknl~  128 (134)
                      .++-+.. .++ |+=..+++|.|-|+.
T Consensus       274 ~~~~~s~~~~~l~~g~~dg~i~iwd~~  300 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEEETT
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEECC
Confidence            3443343 344 444447889998885

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.68  E-value=7.3  Score=28.66  Aligned_cols=57  Identities=18%  Similarity=0.174  Sum_probs=41.8

Q ss_pred             CCCcceeeCCEEEEE---eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEec
Q psy74             9 ERPAYTVHNNVMYYV---KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTR   69 (134)
Q Consensus         9 ERPa~~~~~n~L~Yv---kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~   69 (134)
                      .||.++.....+++|   -+..|+.||+.|.+-..-+.. |.   .|+.+.++|...-+++.+.
T Consensus        22 ~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~-g~---~~~~vafSPDGk~l~~~~~   81 (426)
T d1hzua2          22 KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GY---AVHISRMSASGRYLLVIGR   81 (426)
T ss_dssp             SSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEEC-CS---SEEEEEECTTSCEEEEEET
T ss_pred             CcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeC-CC---CeeEEEECCCCCEEEEEeC
Confidence            457777777779998   457899999998765544433 32   4899999998887766543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=80.82  E-value=6  Score=26.46  Aligned_cols=68  Identities=18%  Similarity=0.232  Sum_probs=42.7

Q ss_pred             eeeCCEEEEEeCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCC
Q psy74            14 TVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE   87 (134)
Q Consensus        14 ~~~~n~L~Yvkek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~   87 (134)
                      +++|+.+.|+.+..|..+|+.++.-..|..  +..  ......+.|.-..|..+..  ........+|+.++..
T Consensus         9 di~G~~v~f~~~~dl~~~d~~~g~~~~Lt~--~~~--~~~~p~~SPDG~~iaf~~~--~~~~~~~~~i~~~~~~   76 (281)
T d1k32a2           9 DIHGDRIIFVCCDDLWEHDLKSGSTRKIVS--NLG--VINNARFFPDGRKIAIRVM--RGSSLNTADLYFYNGE   76 (281)
T ss_dssp             EEETTEEEEEETTEEEEEETTTCCEEEEEC--SSS--EEEEEEECTTSSEEEEEEE--ESTTCCEEEEEEEETT
T ss_pred             CCCCCEEEEEeCCcEEEEECCCCCEEEEec--CCC--cccCEEECCCCCEEEEEEe--eCCCCCceEEEEEEec
Confidence            467999999999999999999865443321  211  2355667787776665543  1123335667765544