Psyllid ID: psy7684

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MSGHDMTLRNRPYPSSSTLKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLHVPSKPNLDNTHAIFQNQRRIESGHNQLNKVVCFDFVPEISEKCAVDEIQ
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHcccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHcccccccEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEccccccccccccccccccccccccccccEEEEEcccccccHHHcHHccc
Coil and Loop (DISEMBL)
msghdmtlrnrpypssstlKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGqvdqnkmnnislsSDLESIRALFNEKEKELCMAVAKVEELTHQLEDlkrgrthqpshphlSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSninssqhqlppgkqqLVAQNSQLTSAHINNVNSLFRSmtssniaavapylhvpskpnldnthaIFQNQrriesghnqlnkvvcfdfvpeisekcavdeiq
Flexible Loop (DISEMBL)
msghdmtlrnrpypssstlkaADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRklralrgqvdqnkmnnislssdLESIRALFNEKEKELCMAVAKVEELTHQLEDLkrgrthqpshphLSAELENLRRELMYHNKLSEQQNVRLHQQREtltkkqaevnsvdLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLHVPSKPNLDNTHAIFQNQRRIESGHNQLNKVVCFDFVPEISEKCAVDEIQ
Low Complexity Region (SEG)
MSGHDMTLRNRPYPSSSTLKAADlltegveltlgeleDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISElqerlqrkrllnqqlasqlnsninssqHQLPPGKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLHVPSKPNLDNTHAIFQNQRRIESGHNQLNKVVCFDFVPEISEKCAVDEIQ
Disordered region (IsUnstruct)
************************LTEGVELTLG***************************************************************************************IRALFNEKEKELCMAVAKVE**********************************************************************************************************************INNVNSLFRSMTSSNIAAVAPYLHVPSKPNLDNTHAIFQNQRRIESGHNQLNKVVCFDFVPEISEKC******
Disordered Region (DISOPRED)
****D*T***************************************************************************************************************************************************************************************************************************************************************************IAAVAP*******************************KVVCFDFVPEISEKCAVD*I*
Disordered Region (DISEMBL)
**************SSSTLKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLK*********PHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLHVPSKPNLDNTHAIFQNQRRIESGHNQLNKVVCFDFVPEISEKCAVDEIQ
Disordered Region (DISPRO)
*************PSSSTLKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLA*******************************************TSSNIAAVAPYLHVPSKPNLDNTHAIFQNQRRIESGHNQLNKVVCFDFVPEISEKCAVDEIQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGHDMTLRNRPYPSSSTLKAADLLTEGVELTLGELEDMAVRQQAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLHVPSKPNLDNTHAIFQNQRRIESGHNQLNKVVCFDFVPEISEKCAVDEIQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q62415	1087	Apoptosis-stimulating of	yes	N/A	0.677	0.206	0.439	1e-42
Q96KQ4	1090	Apoptosis-stimulating of	yes	N/A	0.677	0.206	0.435	2e-42
Q13625	1128	Apoptosis-stimulating of	no	N/A	0.701	0.206	0.435	8e-38
Q8CG79	1128	Apoptosis-stimulating of	no	N/A	0.704	0.207	0.429	7e-37

>sp|Q62415|ASPP1_MOUSE Apoptosis-stimulating of p53 protein 1 OS=Mus musculus GN=Ppp1r13b PE=1 SV=2

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/264 (43%), Positives = 168/264 (63%), Gaps = 39/264 (14%)

Query: 29  VELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRV 88
           VELTL EL+DMA RQQ QI++Q+Q++ AKEQRL FLKQ E R QQ  +E+E+L++L++RV
Sbjct: 124 VELTLSELQDMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSVSENEKLQKLKERV 183

Query: 89  EQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLE 148
           E QE KL+K+RA+RGQVD +K+ N +LS+++E   A+F EK++E+  A+ +V++L+ QLE
Sbjct: 184 EAQENKLKKIRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQLE 243

Query: 149 DLKRGR--THQPSHPHLSA----ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEV 202
           DLK+G+    Q  +  L+     EL+ L +EL   N+L+++QN +L QQ+E L K+  EV
Sbjct: 244 DLKKGKLNGFQSYNGRLTGPAAVELKRLYQELQIRNQLNQEQNSKLQQQKELLNKRNMEV 303

Query: 203 NSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINN 262
             +D RISEL+ERL  K++       QLN    +S  Q P            L+      
Sbjct: 304 AMMDKRISELRERLYGKKI-------QLNRVNGTSSPQSP------------LS------ 338

Query: 263 VNSLFRSMTSSNIAAVAPYLHVPS 286
                   TS  +AAV PY+ VPS
Sbjct: 339 --------TSGRVAAVGPYIQVPS 354

Regulator that plays a central role in regulation of apoptosis via its interaction with p53/TP53. Regulates TP53 by enhancing the DNA binding and transactivation function of TP53 on the promoters of proapoptotic genes in vivo.
Mus musculus (taxid: 10090)

>sp|Q96KQ4|ASPP1_HUMAN Apoptosis-stimulating of p53 protein 1 OS=Homo sapiens GN=PPP1R13B PE=1 SV=3

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/264 (43%), Positives = 166/264 (62%), Gaps = 39/264 (14%)

Query: 29  VELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRV 88
           VELTL EL+DMA RQQ QI++Q+Q++ AKEQRL FLKQ E R QQ  +E+E+L++L++RV
Sbjct: 124 VELTLSELQDMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSISENEKLQKLKERV 183

Query: 89  EQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLE 148
           E QE KL+K+RA+RGQVD +K+ N +LS+++E   A+F EK++E+  A+ +V++L+ QLE
Sbjct: 184 EAQENKLKKIRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQLE 243

Query: 149 DLKRGR--THQPSHPHLSA----ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEV 202
           DLK+G+    Q  +  L+     EL+ L +EL   N+L+++QN +L QQ+E L K+  EV
Sbjct: 244 DLKKGKLNGFQSYNGKLTGPAAVELKRLYQELQIRNQLNQEQNSKLQQQKELLNKRNMEV 303

Query: 203 NSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINN 262
             +D RISEL+ERL  K++       QLN    +S  Q P                    
Sbjct: 304 AMMDKRISELRERLYGKKI-------QLNRVNGTSSPQSP-------------------- 336

Query: 263 VNSLFRSMTSSNIAAVAPYLHVPS 286
                   TS  +AAV PY+ VPS
Sbjct: 337 ------LSTSGRVAAVGPYIQVPS 354

Regulator that plays a central role in regulation of apoptosis via its interaction with p53/TP53. Regulates TP53 by enhancing the DNA binding and transactivation function of TP53 on the promoters of proapoptotic genes in vivo.

Homo sapiens (taxid: 9606)

>sp|Q13625|ASPP2_HUMAN Apoptosis-stimulating of p53 protein 2 OS=Homo sapiens GN=TP53BP2 PE=1 SV=2

 Score =  157 bits (398), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 118/271 (43%), Positives = 168/271 (61%), Gaps = 38/271 (14%)

Query: 29  VELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRV 88
           ++LTL EL++MA RQQ QI++Q+QL+A KEQRL+FLKQ + R QQ  AE E+L+RL++  
Sbjct: 124 MDLTLAELQEMASRQQQQIEAQQQLLATKEQRLKFLKQQDQRQQQQVAEQEKLKRLKEIA 183

Query: 89  EQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLE 148
           E QE KL+K+RAL+G V+Q +++N  L  ++E +  LF +K++EL +AV+KVEELT QLE
Sbjct: 184 ENQEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNNLFQQKQRELVLAVSKVEELTRQLE 243

Query: 149 DLKRGRTHQPSHPHLSA--ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVD 206
            LK GR     H + SA  EL+ L +EL   NKL+++QN +L QQRE L K+ +EV  +D
Sbjct: 244 MLKNGRIDS-HHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMD 302

Query: 207 LRISELQERLQRKRLLNQQLASQLNSNIN-SSQHQLPPGKQQLVAQNSQLTSAHINNVNS 265
            R++EL++RL +K+   QQ       N+  SS   LP           Q  SA       
Sbjct: 303 KRVNELRDRLWKKKAALQQ-----KENLPVSSDGNLP----------QQAASA------- 340

Query: 266 LFRSMTSSNIAAVAPYLH------VPSKPNL 290
                  S +AAV PY+       +PS+P L
Sbjct: 341 ------PSRVAAVGPYIQSSTMPRMPSRPEL 365

Regulator that plays a central role in regulation of apoptosis and cell growth via its interactions. Regulates TP53 by enhancing the DNA binding and transactivation function of TP53 on the promoters of proapoptotic genes in vivo. Inhibits the ability of APPBP1 to conjugate NEDD8 to CUL1, and thereby decreases APPBP1 ability to induce apoptosis. Impedes cell cycle progression at G2/M. Its apoptosis-stimulating activity is inhibited by its interaction with DDX42.

Homo sapiens (taxid: 9606)

>sp|Q8CG79|ASPP2_MOUSE Apoptosis-stimulating of p53 protein 2 OS=Mus musculus GN=Tp53bp2 PE=1 SV=3

 Score =  154 bits (390), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/270 (42%), Positives = 170/270 (62%), Gaps = 36/270 (13%)

Query: 29  VELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRV 88
           ++LTL EL++MA RQQ QI++Q+Q++A KEQRL+FLKQ + R QQ AAE E+L+RLR+  
Sbjct: 124 LDLTLAELQEMASRQQQQIEAQQQMLATKEQRLKFLKQQDQRQQQQAAEQEKLKRLREIA 183

Query: 89  EQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLE 148
           E QE KL+K+RAL+G V+Q +++N  L  ++E + +LF +K++EL +AV+KVEELT QLE
Sbjct: 184 ESQEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNSLFQQKQRELVLAVSKVEELTRQLE 243

Query: 149 DLKRGRTHQPSHPHLSA--ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVD 206
            LK GR     H + SA  EL+ L +EL   NKL+++QN +L QQRE L K+ +EV  +D
Sbjct: 244 MLKNGRIDG-HHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMD 302

Query: 207 LRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINNVNSL 266
            R+SEL++RL +K+   QQ            +  LP      V+ +  L    ++     
Sbjct: 303 KRVSELRDRLWKKKAALQQ------------KENLP------VSPDGNLPQQAVS----- 339

Query: 267 FRSMTSSNIAAVAPYLH------VPSKPNL 290
                 S +AAV PY+       +PS+P L
Sbjct: 340 ----APSRVAAVGPYIQSSTMPRMPSRPEL 365

Regulator that plays a central role in regulation of apoptosis and cell growth via its interactions. Regulates p53/TP53 by enhancing the DNA binding and transactivation function of p53/TP53 on the promoters of proapoptotic genes in vivo. Inhibits the ability of APPBP1 to conjugate NEDD8 to CUL1, and thereby decreases APPBP1 ability to induce apoptosis. Impedes cell cycle progression at G2/M. Its apoptosis-stimulating activity is inhibited by its interaction with DDX42.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
270005081	891	hypothetical protein TcasGA2_TC007089 [T	0.756	0.281	0.646	1e-66
189236786	891	PREDICTED: similar to apoptosis stimulat	0.756	0.281	0.646	2e-66
242010471	908	apoptosis stimulating of P53, putative [	0.743	0.272	0.558	7e-62
291241887	1326	PREDICTED: tumor protein p53 binding pro	0.807	0.202	0.464	6e-52
405961964	1107	Apoptosis-stimulating of p53 protein 1 [	0.638	0.191	0.522	1e-49
340719671	1289	PREDICTED: hypothetical protein LOC10064	0.716	0.184	0.460	6e-49
350400919	1292	PREDICTED: hypothetical protein LOC10074	0.719	0.184	0.457	7e-49
383862741	1287	PREDICTED: uncharacterized protein LOC10	0.719	0.185	0.462	7e-49
328785901	1329	PREDICTED: hypothetical protein LOC41022	0.716	0.179	0.455	4e-48
380029713	1308	PREDICTED: uncharacterized protein LOC10	0.710	0.180	0.456	1e-47

>gi|270005081|gb|EFA01529.1| hypothetical protein TcasGA2_TC007089 [Tribolium castaneum]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 170/263 (64%), Positives = 200/263 (76%), Gaps = 12/263 (4%)

Query: 25  LTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRL 84
           L +GV+LTL EL +MA RQQAQIDSQ QL+AAKEQRLR+LK+ EAR Q+V AE ERLRRL
Sbjct: 94  LPDGVQLTLSELREMACRQQAQIDSQHQLLAAKEQRLRYLKEQEARQQRVQAESERLRRL 153

Query: 85  RDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELT 144
           RDRV+ QELKLRKLRALRGQVD  K NNISL+SDL+SIRALFNEKEKEL +AVAKVEELT
Sbjct: 154 RDRVDAQELKLRKLRALRGQVDHQKQNNISLTSDLDSIRALFNEKEKELSLAVAKVEELT 213

Query: 145 HQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNS 204
            QLE+L+RGRT +   P  + EL+ LRRELMY NKL+EQQN RL+QQRE LT +Q E+++
Sbjct: 214 RQLEELRRGRTARDQPPASALELDKLRRELMYRNKLNEQQNQRLNQQREALTARQEEMSA 273

Query: 205 VDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINN-- 262
           +D RISELQERL +KRLLNQQLA+Q    I+++ H+      QLV    +      NN  
Sbjct: 274 IDKRISELQERLHKKRLLNQQLANQ----ISAASHKA--AYHQLVRLTGEQARKPANNQP 327

Query: 263 VNSLFRSMTSSNIAAVAPYLHVP 285
            N L R     NIAAV PY HVP
Sbjct: 328 PNGLSR----GNIAAVEPYNHVP 346

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236786|ref|XP_968601.2| PREDICTED: similar to apoptosis stimulating of P53 [Tribolium castaneum]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 170/263 (64%), Positives = 200/263 (76%), Gaps = 12/263 (4%)

Query: 25  LTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRL 84
           L +GV+LTL EL +MA RQQAQIDSQ QL+AAKEQRLR+LK+ EAR Q+V AE ERLRRL
Sbjct: 94  LPDGVQLTLSELREMACRQQAQIDSQHQLLAAKEQRLRYLKEQEARQQRVQAESERLRRL 153

Query: 85  RDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELT 144
           RDRV+ QELKLRKLRALRGQVD  K NNISLS+DL+SIRALFNEKEKEL +AVAKVEELT
Sbjct: 154 RDRVDAQELKLRKLRALRGQVDHQKQNNISLSNDLDSIRALFNEKEKELSLAVAKVEELT 213

Query: 145 HQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNS 204
            QLE+L+RGRT +   P  + EL+ LRRELMY NKL+EQQN RL+QQRE LT +Q E+++
Sbjct: 214 RQLEELRRGRTARDQPPASALELDKLRRELMYRNKLNEQQNQRLNQQREALTARQEEMSA 273

Query: 205 VDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINN-- 262
           +D RISELQERL +KRLLNQQLA+Q    I+++ H+      QLV    +      NN  
Sbjct: 274 IDKRISELQERLHKKRLLNQQLANQ----ISAASHKA--AYHQLVRLTGEQARKPANNQP 327

Query: 263 VNSLFRSMTSSNIAAVAPYLHVP 285
            N L R     NIAAV PY HVP
Sbjct: 328 PNGLSR----GNIAAVEPYNHVP 346

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010471|ref|XP_002425991.1| apoptosis stimulating of P53, putative [Pediculus humanus corporis] gi|212509982|gb|EEB13253.1| apoptosis stimulating of P53, putative [Pediculus humanus corporis]

 Score =  243 bits (621), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 149/267 (55%), Positives = 194/267 (72%), Gaps = 20/267 (7%)

Query: 39  MAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKL 98
           MA RQQ QI+SQ Q++ AKEQRLR+LK  EAR  QVAAE+ERLRRL++RVE QELKLRKL
Sbjct: 1   MATRQQQQIESQHQILVAKEQRLRYLKHQEARTHQVAAENERLRRLKERVEAQELKLRKL 60

Query: 99  RALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKR-GRTHQ 157
           RALRGQVDQ+K++N +L+SDL++IRALFNEKEKEL +AVAKVEELT QLE+LKR GRT +
Sbjct: 61  RALRGQVDQDKISNGTLTSDLDTIRALFNEKEKELSLAVAKVEELTRQLEELKRNGRTKE 120

Query: 158 PSHPHLSA--ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQER 215
            + P  +A  EL+ LRREL++ NKL EQQN +L+QQR+ LT++Q E+NS+D RI+ELQ+R
Sbjct: 121 -AQPTATAALELDKLRRELLFRNKLKEQQNAQLNQQRDALTQRQEEINSIDKRITELQDR 179

Query: 216 LQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNS-----------QLTSAHINNVN 264
           LQRKRLLNQQLA+QL+ N N+  + +           +           Q+  + I    
Sbjct: 180 LQRKRLLNQQLANQLHFNNNNQTNVVKNNSDNNQNNINNVTSNGNNNNKQILMSSIRGSK 239

Query: 265 SLFRSMTSS-----NIAAVAPYLHVPS 286
           S    ++       N+AAV P++HVP+
Sbjct: 240 SAIGLLSGYQGQRHNVAAVEPFIHVPN 266

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291241887|ref|XP_002740841.1| PREDICTED: tumor protein p53 binding protein, 2-like [Saccoglossus kowalevskii]

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 139/299 (46%), Positives = 200/299 (66%), Gaps = 31/299 (10%)

Query: 24  LLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRR 83
           +L  GV+LTL +L++MA RQQ QI++Q+Q++ AKEQRL+FLKQ E +HQQ+AAE+ERLR+
Sbjct: 92  MLPAGVDLTLSDLQEMATRQQQQIETQQQMLVAKEQRLKFLKQQEKKHQQMAAENERLRK 151

Query: 84  LRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEEL 143
           LR++VE QELKLRKLRA+RGQVD  K NN+SL+S+LE+IR LF+EKEKEL +AV+KV+EL
Sbjct: 152 LREKVESQELKLRKLRAIRGQVDTTKTNNVSLTSELETIRQLFSEKEKELAIAVSKVDEL 211

Query: 144 THQLEDLKRGRT---------HQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRET 194
           T QLE L++G+          + P+    +AE+E L++ELM  NKL+EQQ+ +L  Q++ 
Sbjct: 212 TEQLEMLRKGKINGLNGDSMYNTPA----AAEVERLKKELMIRNKLNEQQSSKLQAQQQV 267

Query: 195 LTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQ 254
           + +++ EV ++D RI EL ERL+++R      A Q        Q  L P   Q  + N+ 
Sbjct: 268 IVQRKEEVATMDQRIEELAERLRKRR------AQQKLHQHKQQQSPLQPYHLQQHSFNNM 321

Query: 255 LTSAHINNVNSLFRSMTS--SNIAAVAPY-LHVPSKPNLD----NTHAIFQNQRRIESG 306
                 N + SL R+  S  +NIAAV PY +  P+K N      +T+ I    + +E+G
Sbjct: 322 -----PNGIVSLPRTPNSRPTNIAAVEPYSVQAPNKSNRPETSKDTYTIPIKPKLVEAG 375

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|405961964|gb|EKC27691.1| Apoptosis-stimulating of p53 protein 1 [Crassostrea gigas]

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/222 (52%), Positives = 166/222 (74%), Gaps = 10/222 (4%)

Query: 5   DMTLRNRPYPSSSTLKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFL 64
           D  +R+  + +S   K  ++L  GV+LTL EL+DMA RQQ QI++Q+Q++ AKEQRL++L
Sbjct: 291 DWDIRSLQFVNSQLEKYLNMLPGGVDLTLSELQDMAARQQQQIENQQQVLVAKEQRLKYL 350

Query: 65  KQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRA 124
           KQ + R Q + AE +RL++LRDRVE QE+KL+KLRALRG+VD+++  N +L+++LES++A
Sbjct: 351 KQQDQRQQHIVAEGDRLKKLRDRVESQEMKLKKLRALRGEVDKHRNTNGTLNTELESVKA 410

Query: 125 LFNEKEKELCMAVAKVEELTHQLEDLKRGR------THQPSHPHLSAELENLRRELMYHN 178
           LF EKEKEL MAVAKVEE+T QLE ++  R      T  P+    + ELE LR+ELM  N
Sbjct: 411 LFTEKEKELVMAVAKVEEMTRQLEAIRNDRSSAKNGTQNPA----ALELEKLRKELMIRN 466

Query: 179 KLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKR 220
           KL+EQQN +L++ RE L +++ E++ +D RI ELQERL++KR
Sbjct: 467 KLNEQQNSKLNKHREMLNQRKEEISKMDNRIHELQERLKKKR 508

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|340719671|ref|XP_003398271.1| PREDICTED: hypothetical protein LOC100646232 [Bombus terrestris]

 Score =  200 bits (509), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/282 (46%), Positives = 168/282 (59%), Gaps = 44/282 (15%)

Query: 28  GVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDR 87
           G  L L ELE MA RQQ +I  QR+L+  +E RL  L     R  Q  A+ ++L RLR R
Sbjct: 62  GAVLVLSELESMAARQQREIAQQRRLLEQREARLAVL-----RGAQEPAQQDKLARLRHR 116

Query: 88  VEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQL 147
           ++QQ+ KL +LR LR Q DQ++ NN +L+SDL+ IRALFNEKEKEL +AVAKVEELT QL
Sbjct: 117 LDQQQSKLNRLRLLRSQTDQSRANNATLTSDLDCIRALFNEKEKELSLAVAKVEELTRQL 176

Query: 148 EDLKRGR--------------------THQPSHPHL----SAELENLRRELMYHNKLSEQ 183
           E+L RGR                           HL    SAELE LRRELMY NK++EQ
Sbjct: 177 EEL-RGRQNAAGTGNGGGGAGGVGGGGVGGGGGGHLSTPASAELEKLRRELMYRNKMNEQ 235

Query: 184 QNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPP 243
           QN  + QQR  L ++QAE+ S+D RI++LQ RLQRKR LNQ+L+ QL             
Sbjct: 236 QNQMVSQQRLALAQRQAEMASIDARIAQLQGRLQRKRALNQRLSQQL------------- 282

Query: 244 GKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLHVP 285
           G       N+  T + + + N+  +S  + NIAA+ PY H+P
Sbjct: 283 GSGNRTNANTGFTESKL-DFNAGGKSRPAGNIAAIEPYSHIP 323

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400919|ref|XP_003486003.1| PREDICTED: hypothetical protein LOC100743731 [Bombus impatiens]

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 130/284 (45%), Positives = 169/284 (59%), Gaps = 45/284 (15%)

Query: 28  GVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDR 87
           G  L L ELE MA RQQ +I  QR+L+  +E RL  L     R  Q  A+ ++L RLR R
Sbjct: 62  GAVLVLSELESMAARQQREIAQQRRLLEQREARLAVL-----RGAQEPAQQDKLARLRHR 116

Query: 88  VEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQL 147
           ++QQ+ KL +LR LR Q DQ++ NN +L+SDL+ IRALFNEKEKEL +AVAKVEELT QL
Sbjct: 117 LDQQQSKLNRLRLLRSQTDQSRANNATLTSDLDCIRALFNEKEKELSLAVAKVEELTRQL 176

Query: 148 EDLKRGR---------------------THQPSHPHL----SAELENLRRELMYHNKLSE 182
           E+L RGR                            HL    SAELE LRRELMY NK++E
Sbjct: 177 EEL-RGRQNAAGTGNGGGGAGGVGGGGVGGGGGGGHLSTPASAELEKLRRELMYRNKMNE 235

Query: 183 QQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLP 242
           QQN  + QQR  L ++QAE+ S+D RI++LQ RLQRKR LNQ+L+ QL            
Sbjct: 236 QQNQMVSQQRLALAQRQAEMASIDARIAQLQGRLQRKRALNQRLSQQL------------ 283

Query: 243 PGKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLHVPS 286
            G       N+  T + + + N+  +S  + NIAA+ PY H+P+
Sbjct: 284 -GSGNRTNANTGFTESKL-DFNAGGKSRPAGNIAAIEPYSHIPN 325

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862741|ref|XP_003706842.1| PREDICTED: uncharacterized protein LOC100877563 [Megachile rotundata]

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 131/283 (46%), Positives = 171/283 (60%), Gaps = 44/283 (15%)

Query: 28  GVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDR 87
           G  L L ELE MA RQQ +I  QR+L+  +E RL  L     R  Q  A+ E+L RLR R
Sbjct: 62  GAVLVLSELESMAARQQREIAQQRRLLEQREARLAVL-----RGAQEPAQQEQLARLRHR 116

Query: 88  VEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQL 147
           ++QQ+ KL +LR LR Q DQ++ NN +L+SDL+ IRALFNEKEKEL +AVAKVEELT QL
Sbjct: 117 LDQQQSKLNRLRLLRSQTDQSRANNATLTSDLDCIRALFNEKEKELSLAVAKVEELTRQL 176

Query: 148 EDLKRGRTH--------------------QPSHPHL----SAELENLRRELMYHNKLSEQ 183
           E+L RGR +                         HL    SAELE LRRELMY NK++EQ
Sbjct: 177 EEL-RGRQNGGGTGSGGGGAGGVGGGGVGGAGSGHLSTPASAELEKLRRELMYRNKMNEQ 235

Query: 184 QNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPP 243
           QN  + QQR  L ++QAE+ S+D RI++LQ RLQRKR LNQ+L+ QL S   S+      
Sbjct: 236 QNQMVSQQRLALAQRQAEMASIDARIAQLQGRLQRKRALNQRLSQQLGSGNRSN------ 289

Query: 244 GKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLHVPS 286
                   N+    + + + N+  +S  + NIAA+ PY H+P+
Sbjct: 290 -------ANTAFADSKL-DFNAGGKSRPAGNIAAIEPYSHIPN 324

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785901|ref|XP_393703.4| PREDICTED: hypothetical protein LOC410220 [Apis mellifera]

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/283 (45%), Positives = 170/283 (60%), Gaps = 45/283 (15%)

Query: 28  GVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDR 87
           G  L L ELE MA RQQ +I  QR+L+  +E RL  L     R  Q  A+ ++L RLR R
Sbjct: 63  GAVLVLSELESMAARQQREIAQQRRLLEQREARLAVL-----RGAQEPAQQDKLARLRHR 117

Query: 88  VEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQL 147
           ++QQ+ KL +LR LR Q DQ++ NN +L+SDL+ IRALFNEKEKEL +AVAKVEELT QL
Sbjct: 118 LDQQQSKLNRLRLLRSQTDQSRANNATLTSDLDCIRALFNEKEKELSLAVAKVEELTRQL 177

Query: 148 EDLKRGRTH---------------------QPSHPHL----SAELENLRRELMYHNKLSE 182
           E+L RGR +                          HL    SAELE LRREL+Y NK++E
Sbjct: 178 EEL-RGRQNAAGTGSGGGGAGGVGGGGVGGGGGGGHLSTPASAELEKLRRELIYRNKMNE 236

Query: 183 QQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLP 242
           QQN  + QQR  L ++QAE+ S+D RI++LQ RLQRKR LNQ+L+ QL S   +S     
Sbjct: 237 QQNQMVSQQRLALAQRQAEMASIDARIAQLQGRLQRKRALNQRLSQQLGSGNRTS----- 291

Query: 243 PGKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLHVP 285
                    ++  T + + + N   +S  + NIAA+ PY H+P
Sbjct: 292 --------ASTGFTESKL-DFNGGGKSRPAGNIAAIEPYSHIP 325

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029713|ref|XP_003698511.1| PREDICTED: uncharacterized protein LOC100870125 [Apis florea]

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 130/285 (45%), Positives = 171/285 (60%), Gaps = 49/285 (17%)

Query: 28  GVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDR 87
           G  L L ELE MA RQQ +I  QR+L+  +E RL  L     R  Q  A+ ++L RLR R
Sbjct: 59  GAVLVLSELESMAARQQREIAQQRRLLEQREARLAVL-----RGAQEPAQQDKLARLRHR 113

Query: 88  VEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQL 147
           ++QQ+ KL +LR LR Q DQ++ NN +L+SDL+ IRALFNEKEKEL +AVAKVEELT QL
Sbjct: 114 LDQQQSKLNRLRLLRSQTDQSRANNATLTSDLDCIRALFNEKEKELSLAVAKVEELTRQL 173

Query: 148 EDLKRGRTH---------------------QPSHPHL----SAELENLRRELMYHNKLSE 182
           E+L RGR +                          HL    SAELE LRREL+Y NK++E
Sbjct: 174 EEL-RGRQNAAGTGSGGGGAGGVGGGGVGGGGGGGHLSTPASAELEKLRRELIYRNKMNE 232

Query: 183 QQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSN--INSSQHQ 240
           QQN  + QQR  L ++QAE+ S+D RI++LQ RLQRKR LNQ+L+ QL S    N+S   
Sbjct: 233 QQNQMVSQQRLALAQRQAEMASIDARIAQLQGRLQRKRALNQRLSQQLGSGNRTNAS--- 289

Query: 241 LPPGKQQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLHVP 285
                       +  T + + + N+  +S  + NIAA+ PY H+P
Sbjct: 290 ------------TGFTESKL-DFNAGGKSRPAGNIAAIEPYSHIP 321

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
FB|FBgn0034606	1069	ASPP "Ankyrin-repeat, SH3-doma	0.521	0.161	0.614	2e-47
UNIPROTKB|F1NWV9	1094	PPP1R13B "Uncharacterized prot	0.521	0.158	0.497	5.6e-43
MGI|MGI:2138319	1128	Trp53bp2 "transformation relat	0.521	0.153	0.517	6.1e-43
RGD|1305461	1122	Tp53bp2 "tumor protein p53 bin	0.521	0.154	0.511	1.2e-42
UNIPROTKB|F1MWG7	1134	TP53BP2 "Uncharacterized prote	0.521	0.152	0.505	2.7e-42
UNIPROTKB|F1S642	1135	TP53BP2 "Uncharacterized prote	0.521	0.152	0.505	2.7e-42
UNIPROTKB|E1BHY2	1089	PPP1R13B "Uncharacterized prot	0.524	0.159	0.488	6.4e-42
UNIPROTKB|Q13625	1128	TP53BP2 "Apoptosis-stimulating	0.521	0.153	0.505	7.2e-42
MGI|MGI:1336199	1087	Ppp1r13b "protein phosphatase	0.524	0.160	0.483	1.4e-41
UNIPROTKB|Q96KQ4	1090	PPP1R13B "Apoptosis-stimulatin	0.524	0.159	0.483	2.3e-41

FB|FBgn0034606 ASPP "Ankyrin-repeat, SH3-domain, and Proline-rich-region containing Protein" [Drosophila melanogaster (taxid:7227)]

 Score = 506 (183.2 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 115/187 (61%), Positives = 133/187 (71%)

Query:    39 MAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKL 98
             MA+RQQ QIDSQ QL+A KEQRLRFLK  E R    +AE ERLRRLR+RVE QE KLR+L
Sbjct:    73 MALRQQQQIDSQHQLLATKEQRLRFLKSQEVRSAVASAEGERLRRLRERVEAQESKLRRL 132

Query:    99 RALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRT--- 155
             RALRGQVD  K  N++LS+DL+SIRALF+EKEKEL +AVAKVE LT QLE+L+R R    
Sbjct:   133 RALRGQVDLQKTYNVTLSNDLDSIRALFSEKEKELSLAVAKVEALTRQLEELRRDRRCPV 192

Query:   156 -----------HQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNS 204
                         Q   P  S ELE LRRELMY N+LS QQ+ RLH QRE L ++QAE+ S
Sbjct:   193 NILTAAGNGVGGQSLPPQASRELEKLRRELMYRNQLSLQQDARLHMQREALQQRQAELRS 252

Query:   205 VDLRISE 211
              D RI E
Sbjct:   253 TDQRIYE 259

GO:0061098 "positive regulation of protein tyrosine kinase activity" evidence=IGI

GO:0030296 "protein tyrosine kinase activator activity" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

UNIPROTKB|F1NWV9 PPP1R13B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 433 (157.5 bits), Expect = 5.6e-43, Sum P(2) = 5.6e-43
 Identities = 90/181 (49%), Positives = 133/181 (73%)

Query:    38 DMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRK 97
             DMA RQQ QI++Q+Q++ AKEQRLR+LKQ E R QQ  +E E+L++L++RVE QE KL+K
Sbjct:   130 DMAARQQQQIENQQQMLVAKEQRLRYLKQQERRQQQSVSESEKLQKLKERVETQETKLKK 189

Query:    98 LRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTH- 156
             +RA+RGQVD +K+ N +LS+++E I A+F EK++EL  AV KV++LT QLEDL++G+ + 
Sbjct:   190 IRAMRGQVDYSKIMNGNLSTEIEHISAMFQEKQQELQAAVLKVDQLTQQLEDLRKGKLNG 249

Query:   157 ------QPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRIS 210
                   Q + P  + EL+ L +EL   N+L+++QN +L QQ+E L K+  EV  +D RI+
Sbjct:   250 FQSYNGQVTGP-AAVELKKLYQELQIRNRLNQEQNSKLQQQKELLNKRNMEVAMMDKRIN 308

Query:   211 E 211
             E
Sbjct:   309 E 309

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

MGI|MGI:2138319 Trp53bp2 "transformation related protein 53 binding protein 2" [Mus musculus (taxid:10090)]

 Score = 443 (161.0 bits), Expect = 6.1e-43, Sum P(2) = 6.1e-43
 Identities = 91/176 (51%), Positives = 129/176 (73%)

Query:    38 DMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRK 97
             +MA RQQ QI++Q+Q++A KEQRL+FLKQ + R QQ AAE E+L+RLR+  E QE KL+K
Sbjct:   133 EMASRQQQQIEAQQQMLATKEQRLKFLKQQDQRQQQQAAEQEKLKRLREIAESQEAKLKK 192

Query:    98 LRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQ 157
             +RAL+G V+Q +++N  L  ++E + +LF +K++EL +AV+KVEELT QLE LK GR   
Sbjct:   193 VRALKGHVEQKRLSNGKLVEEIEQMNSLFQQKQRELVLAVSKVEELTRQLEMLKNGRI-D 251

Query:   158 PSHPHLSA--ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISE 211
               H + SA  EL+ L +EL   NKL+++QN +L QQRE L K+ +EV  +D R+SE
Sbjct:   252 GHHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVSE 307

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007417 "central nervous system development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI

GO:0010212 "response to ionizing radiation" evidence=IMP

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=ISO

RGD|1305461 Tp53bp2 "tumor protein p53 binding protein, 2" [Rattus norvegicus (taxid:10116)]

 Score = 440 (159.9 bits), Expect = 1.2e-42, Sum P(2) = 1.2e-42
 Identities = 90/176 (51%), Positives = 129/176 (73%)

Query:    38 DMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRK 97
             +MA RQQ QI++Q+Q++A KEQRL+FLKQ + R QQ AAE E+L+RLR+  E QE KL+K
Sbjct:   133 EMASRQQQQIEAQQQMLATKEQRLKFLKQQDQRQQQQAAEQEKLKRLREIAESQEAKLKK 192

Query:    98 LRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQ 157
             +RAL+G V+Q +++N  L  ++E + +LF +K++EL +AV+KVEELT QLE LK GR   
Sbjct:   193 VRALKGHVEQKRLSNGKLVEEIEQMNSLFQQKQRELVLAVSKVEELTRQLEMLKNGRI-D 251

Query:   158 PSHPHLSA--ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISE 211
               H + SA  EL+ L +EL   NKL+++QN +L QQRE L K+ +EV  +D R++E
Sbjct:   252 GHHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVNE 307

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0007417 "central nervous system development" evidence=IEA;ISO

GO:0007507 "heart development" evidence=IEA;ISO

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA;ISO

GO:0010212 "response to ionizing radiation" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0051059 "NF-kappaB binding" evidence=IEA;ISO

UNIPROTKB|F1MWG7 TP53BP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 437 (158.9 bits), Expect = 2.7e-42, Sum P(2) = 2.7e-42
 Identities = 89/176 (50%), Positives = 129/176 (73%)

Query:    38 DMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRK 97
             +MA RQQ QI++Q+Q++A KEQRL+FLKQ + R QQ AAE E+L+RL++  E QE KL+K
Sbjct:   138 EMASRQQQQIEAQQQMLATKEQRLKFLKQQDQRQQQQAAEQEKLKRLKEIAENQEAKLKK 197

Query:    98 LRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQ 157
             +RAL+G V+Q +++N  L  ++E + +LF +K++EL +AV+KVEELT QLE LK GR   
Sbjct:   198 VRALKGHVEQKRLSNGKLVEEIEQMNSLFQQKQRELVLAVSKVEELTRQLEMLKNGRI-D 256

Query:   158 PSHPHLSA--ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISE 211
               H + SA  EL+ L +EL   NKL+++QN +L QQRE L K+ +EV  +D R++E
Sbjct:   257 GHHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVNE 312

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1S642 TP53BP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 437 (158.9 bits), Expect = 2.7e-42, Sum P(2) = 2.7e-42
 Identities = 89/176 (50%), Positives = 129/176 (73%)

Query:    38 DMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRK 97
             +MA RQQ QI++Q+Q++A KEQRL+FLKQ + R QQ AAE E+L+RL++  E QE KL+K
Sbjct:   139 EMASRQQQQIEAQQQMLATKEQRLKFLKQQDQRQQQQAAEQEKLKRLKEIAENQEAKLKK 198

Query:    98 LRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQ 157
             +RAL+G V+Q +++N  L  ++E + +LF +K++EL +AV+KVEELT QLE LK GR   
Sbjct:   199 VRALKGHVEQKRLSNGKLVEEIEQMNSLFQQKQRELVLAVSKVEELTRQLEMLKNGRI-D 257

Query:   158 PSHPHLSA--ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISE 211
               H + SA  EL+ L +EL   NKL+++QN +L QQRE L K+ +EV  +D R++E
Sbjct:   258 GHHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVNE 313

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BHY2 PPP1R13B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 426 (155.0 bits), Expect = 6.4e-42, Sum P(2) = 6.4e-42
 Identities = 88/180 (48%), Positives = 132/180 (73%)

Query:    38 DMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRK 97
             DMA RQQ QI++Q+Q++ AKEQRL FLKQ E R QQ  +E+E+L++L++RVE QE KL+K
Sbjct:   130 DMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSISENEKLQKLKERVEAQENKLKK 189

Query:    98 LRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTH- 156
             +RA+RGQVD +K+ N +LS+++E   A+F EK++E+  A+ +V++L+ QLEDLK+G+ + 
Sbjct:   190 IRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQLEDLKKGKLNG 249

Query:   157 -QPSHPHLSA----ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISE 211
              QP    L+     EL+ L +EL   N+L+++QN +L QQ+E L K+  EV  +D RISE
Sbjct:   250 FQPYSGKLTGPAAVELKRLYQELQIRNQLNQEQNSKLQQQKELLNKRNVEVAMMDKRISE 309

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q13625 TP53BP2 "Apoptosis-stimulating of p53 protein 2" [Homo sapiens (taxid:9606)]

 Score = 433 (157.5 bits), Expect = 7.2e-42, Sum P(2) = 7.2e-42
 Identities = 89/176 (50%), Positives = 127/176 (72%)

Query:    38 DMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRK 97
             +MA RQQ QI++Q+QL+A KEQRL+FLKQ + R QQ  AE E+L+RL++  E QE KL+K
Sbjct:   133 EMASRQQQQIEAQQQLLATKEQRLKFLKQQDQRQQQQVAEQEKLKRLKEIAENQEAKLKK 192

Query:    98 LRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQ 157
             +RAL+G V+Q +++N  L  ++E +  LF +K++EL +AV+KVEELT QLE LK GR   
Sbjct:   193 VRALKGHVEQKRLSNGKLVEEIEQMNNLFQQKQRELVLAVSKVEELTRQLEMLKNGRIDS 252

Query:   158 PSHPHLSA--ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISE 211
               H + SA  EL+ L +EL   NKL+++QN +L QQRE L K+ +EV  +D R++E
Sbjct:   253 -HHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVNE 307

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0045786 "negative regulation of cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0051059 "NF-kappaB binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005070 "SH3/SH2 adaptor activity" evidence=TAS

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

MGI|MGI:1336199 Ppp1r13b "protein phosphatase 1, regulatory (inhibitor) subunit 13B" [Mus musculus (taxid:10090)]

 Score = 421 (153.3 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
 Identities = 87/180 (48%), Positives = 132/180 (73%)

Query:    38 DMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRK 97
             DMA RQQ QI++Q+Q++ AKEQRL FLKQ E R QQ  +E+E+L++L++RVE QE KL+K
Sbjct:   133 DMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSVSENEKLQKLKERVEAQENKLKK 192

Query:    98 LRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTH- 156
             +RA+RGQVD +K+ N +LS+++E   A+F EK++E+  A+ +V++L+ QLEDLK+G+ + 
Sbjct:   193 IRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQLEDLKKGKLNG 252

Query:   157 -QPSHPHLSA----ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISE 211
              Q  +  L+     EL+ L +EL   N+L+++QN +L QQ+E L K+  EV  +D RISE
Sbjct:   253 FQSYNGRLTGPAAVELKRLYQELQIRNQLNQEQNSKLQQQKELLNKRNMEVAMMDKRISE 312

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

UNIPROTKB|Q96KQ4 PPP1R13B "Apoptosis-stimulating of p53 protein 1" [Homo sapiens (taxid:9606)]

 Score = 419 (152.6 bits), Expect = 2.3e-41, Sum P(2) = 2.3e-41
 Identities = 87/180 (48%), Positives = 132/180 (73%)

Query:    38 DMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRK 97
             DMA RQQ QI++Q+Q++ AKEQRL FLKQ E R QQ  +E+E+L++L++RVE QE KL+K
Sbjct:   133 DMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSISENEKLQKLKERVEAQENKLKK 192

Query:    98 LRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTH- 156
             +RA+RGQVD +K+ N +LS+++E   A+F EK++E+  A+ +V++L+ QLEDLK+G+ + 
Sbjct:   193 IRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQLEDLKKGKLNG 252

Query:   157 -QPSHPHLSA----ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISE 211
              Q  +  L+     EL+ L +EL   N+L+++QN +L QQ+E L K+  EV  +D RISE
Sbjct:   253 FQSYNGKLTGPAAVELKRLYQELQIRNQLNQEQNSKLQQQKELLNKRNMEVAMMDKRISE 312

GO:0006915 "apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045786 "negative regulation of cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	332
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
TIGR03007	498	TIGR03007, pepcterm_ChnLen, polysaccharide chain l	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 44/225 (19%), Positives = 82/225 (36%), Gaps = 10/225 (4%)

Query: 8   LRNRPYPSSSTLKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQH 67
           LR      S  + A       +E  + +LE+   +   ++      I   E+RL   ++ 
Sbjct: 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776

Query: 68  EARH-QQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALF 126
            A    ++     ++ +L++ ++        L  LR ++        +L   LES+    
Sbjct: 777 LAEAEAEIEELEAQIEQLKEELKALR---EALDELRAELTLLNEEAANLRERLESLERRI 833

Query: 127 NEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNV 186
              E+ L     ++EEL+  +E L            L   +E L  EL            
Sbjct: 834 AATERRLEDLEEQIEELSEDIESL------AAEIEELEELIEELESELEALLNERASLEE 887

Query: 187 RLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLN 231
            L   R  L +   E+  ++ + SEL+  L+  R    QL  +L 
Sbjct: 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 21/249 (8%)

Query: 16  SSTLKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVA 75
           ++ L+  +   E + L + ELE+     Q ++ +    I+  EQ+ + L++   R   + 
Sbjct: 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE---RLANLE 315

Query: 76  AEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCM 135
            + E L    + +E +  +L +  A   +  +       L  +LES+ A   E E EL  
Sbjct: 316 RQLEELEAQLEELESKLDELAEELAELEEKLE------ELKEELESLEAELEELEAELEE 369

Query: 136 AVAKVEELTHQLEDLKRGRT-HQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRET 194
             +++EEL  QLE L+      +     L+ E+E L   L    +  E +  RL Q+ E 
Sbjct: 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL----ERLEDRRERLQQEIEE 425

Query: 195 LTKKQ--AEVNSVDLRISELQERL----QRKRLLNQQLASQLNSNINSSQHQLPPGKQQL 248
           L KK   AE+  +   + EL+E L    +    L + L       +  ++  L   +++L
Sbjct: 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE-LEEAEQALDAAEREL 484

Query: 249 VAQNSQLTS 257
               ++L S
Sbjct: 485 AQLQARLDS 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 36/176 (20%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 45  AQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAE----HERLRRLRDRVEQQELKLRKLRA 100
            +I+   + I   E     +K+ E   ++V  E       L  LR+ +E+ E ++++L  
Sbjct: 176 RRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE 235

Query: 101 LRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSH 160
           L+ ++++ +    SL      +     E E+ +     ++EEL  ++++LK  +     +
Sbjct: 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY 295

Query: 161 PHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERL 216
             LS   E    EL    ++ E++  RL ++   + ++  E+   + R+ EL+++L
Sbjct: 296 IKLSEFYEEYLDEL---REI-EKRLSRLEEEINGIEERIKELEEKEERLEELKKKL 347

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 11/204 (5%)

Query: 16  SSTLKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIA-AKEQRLRFLKQHEARHQQV 74
           S  L   +   E +E  L E E+     +A+I+     I   KE+     +  +    ++
Sbjct: 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812

Query: 75  AAEHERLRRLRDRVEQQE----LKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKE 130
              +E    LR+R+E  E       R+L  L  Q+++   +  SL++++E +  L  E E
Sbjct: 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872

Query: 131 KELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQ 190
            EL    A + E     E L   R+       LS EL  L  +     +  E+   +L Q
Sbjct: 873 SEL---EALLNERASLEEALALLRSELEE---LSEELRELESKRSELRRELEELREKLAQ 926

Query: 191 QRETLTKKQAEVNSVDLRISELQE 214
               L   +  ++++  R+SE   
Sbjct: 927 LELRLEGLEVRIDNLQERLSEEYS 950

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 46/225 (20%), Positives = 94/225 (41%), Gaps = 26/225 (11%)

Query: 33  LGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLK-QHEARHQQVAAEHERLRRLRDRVEQQ 91
           L EL +     Q ++   ++ I   E  +  L+ + E    ++    ERL  L++++E  
Sbjct: 276 LEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEAL 335

Query: 92  ELKLRKLRALRGQVDQNKMNNISLSSDLESIR-ALFNEKEKELCMAVAKVEELTHQLEDL 150
           + +L +   L  +++Q          +LE    AL  E E+       ++ EL  +L ++
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEI 395

Query: 151 KRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRIS 210
           +              ELE L+RE+     L E+   RL ++ E L ++  E+ +    + 
Sbjct: 396 RN-------------ELEELKREI---ESLEERLE-RLSERLEDLKEELKELEA---ELE 435

Query: 211 ELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQL 255
           ELQ  L+       +   +L   +   + +L   +++L     +L
Sbjct: 436 ELQTELEELN----EELEELEEQLEELRDRLKELERELAELQEEL 476

Length = 1163

>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 27/219 (12%)

Query: 24  LLTEGVELTLGEL-EDMAVRQQ---AQIDSQRQLIAAKEQRLRFLKQH--EARHQQVAAE 77
           LLT  VE TLG   +D    Q+    QI +  + + A E RL+  KQ        Q    
Sbjct: 143 LLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDY 202

Query: 78  HERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAV 137
           +  +   ++ +E   L+L +  A R  + +       L  +   + A  +    EL    
Sbjct: 203 YSEISEAQEELEAARLELNEAIAQRDALKRQ------LGGEEPVLLAGSSVANSELDG-- 254

Query: 138 AKVEELTHQLEDLKRGRTHQPSHPHLSA---ELENLRRELMYHNKL-------SEQQNVR 187
            ++E L  QL+ L+   T +  HP + A   E+  L  +               E  N  
Sbjct: 255 -RIEALEKQLDALRLRYTDK--HPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPV 311

Query: 188 LHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQL 226
             Q +  L + +AE+ S++ R++EL  R++R   L + +
Sbjct: 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTI 350

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 498

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 43/205 (20%), Positives = 85/205 (41%), Gaps = 24/205 (11%)

Query: 29  VELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEAR-HQQVAAEHERLRRLRDR 87
           +E  + ELE+     +  +   R+ +   E+ L  L++      +Q++A  + L RL   
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741

Query: 88  VEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQL 147
           VEQ E ++ +L     +++        L   LE       E E E+    A++E+L  +L
Sbjct: 742 VEQLEERIAQLSKELTELEAEIE---ELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 148 EDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDL 207
           + L+               L+ LR EL          N      RE L   +  + + + 
Sbjct: 799 KALRE-------------ALDELRAEL-------TLLNEEAANLRERLESLERRIAATER 838

Query: 208 RISELQERLQRKRLLNQQLASQLNS 232
           R+ +L+E+++      + LA+++  
Sbjct: 839 RLEDLEEQIEELSEDIESLAAEIEE 863

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 40/212 (18%), Positives = 90/212 (42%), Gaps = 12/212 (5%)

Query: 50  QRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNK 109
           + +L   + Q  +  ++ ++   ++ +  + L  LR ++E+ E   R+L  L+ ++   +
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE---RQLEELKRELAALE 729

Query: 110 MNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELEN 169
                L S LE +     E E+EL     ++EEL  +LE L+           L  E+E 
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA------KLKEEIEE 783

Query: 170 LRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQ 229
           L  +     +  E+    L +    L   + E+ S++ R   L++ ++      ++L  +
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843

Query: 230 LNS---NINSSQHQLPPGKQQLVAQNSQLTSA 258
           L+     +   + +L   K++L    ++    
Sbjct: 844 LDELEEELEELEKELEELKEELEELEAEKEEL 875

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 48/227 (21%), Positives = 101/227 (44%), Gaps = 5/227 (2%)

Query: 16  SSTLKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVA 75
              LK+       +E  L EL       + Q++  ++ +AA E+ L   +Q ++R +++ 
Sbjct: 687 EEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL---EQLQSRLEELE 743

Query: 76  AEHERLRRLRDRVEQQELKLR-KLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELC 134
            E E L    + ++++  +L  +L +L   + + K     L    ++++    E E+EL 
Sbjct: 744 EELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELE 803

Query: 135 MAVAKVEELTHQLEDLK-RGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRE 193
            A  +++ L  +LE L+ R    +     L  E+E L  +L    +  E+    L + +E
Sbjct: 804 EAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Query: 194 TLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQ 240
            L + +AE   ++  + EL+E  +      ++L S+L       +  
Sbjct: 864 ELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 22/207 (10%)

Query: 30  ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVE 89
           E  L ELE   V +   I+    +I  K Q+L  L++          + ER + L     
Sbjct: 173 EKALEELE--EVEEN--IERLDLIIDEKRQQLERLRRERE-------KAERYQALLKEKR 221

Query: 90  QQE--LKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQL 147
           + E    L++  AL  Q +  +    SL  +LE +    +E EK L      +EEL  ++
Sbjct: 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI 281

Query: 148 EDLKRGR--THQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSV 205
           +DL        +     L AE+ +L R +        ++   L    E L K +AE++ +
Sbjct: 282 KDLGEEEQLRVKEKIGELEAEIASLERSI-------AEKERELEDAEERLAKLEAEIDKL 334

Query: 206 DLRISELQERLQRKRLLNQQLASQLNS 232
              I EL+  ++ +R    +L  +   
Sbjct: 335 LAEIEELEREIEEERKRRDKLTEEYAE 361

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 50/237 (21%), Positives = 104/237 (43%), Gaps = 15/237 (6%)

Query: 27  EGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLK-QHEARHQQVAAEHERLRRLR 85
             +E  L +LE+     + ++ S   L+    ++L  L+ Q E   +++AA  E L +L+
Sbjct: 677 AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 86  DRVEQQELKLRKLRA----LRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVE 141
            R+E+ E +L +L      L+ ++++ +    SL   L  ++    E E++      ++E
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796

Query: 142 ELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAE 201
           EL  +LE+ +R          L  ELE+L +         EQ+   L ++ E L +K  E
Sbjct: 797 ELEEELEEAERRLDA------LERELESLEQRRERL----EQEIEELEEEIEELEEKLDE 846

Query: 202 VNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSA 258
           +      + +  E L+ +    +    +L   +   + +    +++L    S+L   
Sbjct: 847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 10/160 (6%)

Query: 80  RLRRLRDRVEQQELKLRKLR----ALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCM 135
            +  L +++E+ E K+ +L      LR ++++ +     L  +LE +    +   K+L  
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737

Query: 136 AVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETL 195
             A+VE+L  ++  L +  T       L AE+E L   L    +   +    + +    +
Sbjct: 738 LEAEVEQLEERIAQLSKELT------ELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 196 TKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNIN 235
            + + E+ ++   + EL+  L         L  +L S   
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 10/196 (5%)

Query: 30  ELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVE 89
           +  + ELE+     Q +++   + +   E+RL  L++     +Q     E+   + +  E
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ--EIEELEE 835

Query: 90  QQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLED 149
           + E    KL  L  ++++ +     L  +LE + A   E E EL     + EEL  +L +
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895

Query: 150 LKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTK--KQAEVNSVDL 207
           L+           L  E+E LR  L       E+  V L +  E L +  +      ++ 
Sbjct: 896 LESELA------ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELER 949

Query: 208 RISELQERLQRKRLLN 223
            I  L+E ++    +N
Sbjct: 950 EIERLEEEIEALGPVN 965

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 30/195 (15%), Positives = 76/195 (38%), Gaps = 25/195 (12%)

Query: 40  AVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLR 99
           A +++   D++ +L   + +  + L + E   +++  E +R  +L +   + + +L  LR
Sbjct: 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370

Query: 100 A-----------LRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLE 148
           A            R ++   +     L  ++  ++   +  ++EL     ++ +L   + 
Sbjct: 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430

Query: 149 DLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKK----QAEVNS 204
            ++           L  E E+   E+    K  E +  +L        ++    + E + 
Sbjct: 431 GIEAK------INELEEEKEDKALEI----KKQEWKLEQLAADLSKYEQELYDLKEEYDR 480

Query: 205 VDLRISELQERLQRK 219
           V+  +S+LQ  L   
Sbjct: 481 VEKELSKLQRELAEA 495

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 45/235 (19%), Positives = 102/235 (43%), Gaps = 27/235 (11%)

Query: 33  LGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQE 92
           +GE+E    + + + +  ++ +   E+ L  L+      Q++      L+ L  R+E+ E
Sbjct: 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE------QEIENVKSELKELEARIEELE 771

Query: 93  LKLRKLRALRGQVDQNKMNNISLS---SDLESIRALFNEKEKELCMAVAKVEELTHQLED 149
             L KL           +N++      S +  I+A  ++ E+E+    A++ E+  +L  
Sbjct: 772 EDLHKLEE--------ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR 823

Query: 150 LKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQ----NVRLHQQRETLTKKQAEVNSV 205
           L   + +         EL+  R +L    K  E++    N +  +  E L + +A +  +
Sbjct: 824 LTLEKEYLEK---EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880

Query: 206 DLRISELQ---ERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTS 257
           + R+ +L+   + L+ +    ++   +L + I   + +L   K +L A   +L+ 
Sbjct: 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 20/191 (10%)

Query: 36  LEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEAR-HQQVAAEHERLRRLRDRVEQQELK 94
           LE    R +A+ DSQ  +    +               Q +    R   LR ++E    +
Sbjct: 93  LEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQ 152

Query: 95  LRKLRALRG--QVDQNKMNNIS--LSSDLESIRALFNEKEKELCMAVAKVE--ELTHQLE 148
           +++L A     Q     +      +S +LE+ R L  +        V+++E  EL  +  
Sbjct: 153 IKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKG------LVSRLELLELERERA 206

Query: 149 DLKRGRTHQPSHPHLSAELENLRRELM-YHNKLSEQQNVRLHQQRETLTKKQAEVNSVDL 207
           + +             AELE L+R++     +  + +     +  E LT+ QA +  +  
Sbjct: 207 EAQGELGRL------EAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRE 260

Query: 208 RISELQERLQR 218
           R+++ ++RLQR
Sbjct: 261 RLNKARDRLQR 271

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 40/212 (18%), Positives = 82/212 (38%), Gaps = 32/212 (15%)

Query: 27  EGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQ--------VAAEH 78
           E +E  L EL++     + +++ +  L+   EQ L  L++ +   ++        +    
Sbjct: 319 EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELF 378

Query: 79  ERLR-RLRDRVEQQELKLRKLRALRGQVDQNKM--------------NNISLSSDLESIR 123
           E LR  L +   +      +L  L+ +++  +                   L ++LE ++
Sbjct: 379 EALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQ 438

Query: 124 ALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKL--- 180
               E  +EL     ++EEL  +L++L+R          L  EL+ L +EL         
Sbjct: 439 TELEELNEELEELEEQLEELRDRLKELER------ELAELQEELQRLEKELSSLEARLDR 492

Query: 181 SEQQNVRLHQQRETLTKKQAEVNSVDLRISEL 212
            E +       R  L   ++ +  V   ++EL
Sbjct: 493 LEAEQRASQGVRAVLEALESGLPGVYGPVAEL 524

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 16/198 (8%)

Query: 27  EGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLR--FLKQHEARHQQVAAEHERLRRL 84
           E V+  L ELE      +  +    + +   E RL    + + +A   ++  E  R+   
Sbjct: 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEAR 813

Query: 85  RDRVEQQELKLRKLRALRGQVDQNKMNNI--------SLSSDLESIRALFNEKEKELCMA 136
              +EQ+  +L   +    +  Q              S+  ++E++     E E+EL   
Sbjct: 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEEL 873

Query: 137 VAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLT 196
            A + +L  +L DLK+ R        L A+L  L R++       E++  RL + +  L 
Sbjct: 874 EAALRDLESRLGDLKKERD------ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE 927

Query: 197 KKQAEVNSVDLRISELQE 214
             + E++ ++    E +E
Sbjct: 928 ALEEELSEIEDPKGEDEE 945

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG0515|consensus	752		99.63
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	94.67
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	88.86
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	87.95
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	84.81
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	80.08

>KOG0515|consensus

Probab=99.63  E-value=3.6e-17  Score=165.96  Aligned_cols=79  Identities=38%  Similarity=0.547  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHhHHHHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCcc
Q psy7684         166 ELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGK  245 (332)
Q Consensus       166 EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~qQk~~~~~~~~~~~~~~~~~~~  245 (332)
                      ||++||+||+|||+||++|+++|+||+   +|||.|||.||||++|||+|||+||+.++++++                 
T Consensus         2 el~rly~elq~rn~lnqeQnsklqqq~---nkRn~evA~mdkr~selr~rl~~Kk~~l~~i~~-----------------   61 (752)
T KOG0515|consen    2 ELTRLYGELQYRNNLNQEQNSKLQQQD---NKRNVEVAPMDKRTSELRSRLAHKKSTLPFISA-----------------   61 (752)
T ss_pred             cccccccccccccccchhHHHHHHhhc---ccccceeecccchHHHHHHHHhhcccccccccC-----------------
Confidence            799999999999999999999999999   999999999999999999999999999776632                 


Q ss_pred             hhhcccccccccccccccccccccCCCCceeEeccccc
Q psy7684         246 QQLVAQNSQLTSAHINNVNSLFRSMTSSNIAAVAPYLH  283 (332)
Q Consensus       246 ~~~~~~~~~~~~~~i~~~n~~~~~~~~gnVAAVePy~h  283 (332)
                                  ++   .+    +++.++||||.||+|
T Consensus        62 ------------pQ---~~----~s~p~RVaAvgPyiq   80 (752)
T KOG0515|consen   62 ------------PQ---RM----SSPPVRVAAVGPYIQ   80 (752)
T ss_pred             ------------cc---cc----cCCCceeeccCCCCC
Confidence                        11   12    268899999999999

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=94.67  E-value=0.63  Score=46.94  Aligned_cols=163  Identities=24%  Similarity=0.354  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcc
Q psy7684          36 LEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISL  115 (332)
Q Consensus        36 LqemAtRQQQQIeaQqQlL~AKEqRLr~Lk~qe~r~~q~a~e~ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L  115 (332)
                      +=++--|-.|=-.+.-|||.+|-   |-+.          ...|-|+.+||-++.-.--          .++-+++|-+|
T Consensus        55 ff~i~~re~qlk~aa~~llq~ki---rk~~----------e~~eglr~i~es~~e~q~e----------~~qL~~qnqkL  111 (401)
T PF06785_consen   55 FFAIGRREKQLKTAAGQLLQTKI---RKIT----------EKDEGLRKIRESVEERQQE----------SEQLQSQNQKL  111 (401)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHH---HHHH----------hccHHHHHHHHHHHHHHHH----------HHHHHHhHHHH
Confidence            34566677776777777887772   2221          1234577777766632221          23446789999


Q ss_pred             hhhhHHHHHhhHH---HHHHHHHHHHHHHH----HHHhHHHhccCCCCCCCCCcchHHH-HHHHHHHHHHhhhcHHHhHH
Q psy7684         116 SSDLESIRALFNE---KEKELCMAVAKVEE----LTHQLEDLKRGRTHQPSHPHLSAEL-ENLRRELMYHNKLSEQQNVR  187 (332)
Q Consensus       116 ~~Eieqm~~LF~e---KqkEL~~AvskVee----Lt~QLE~LR~~r~~~~~~~~aa~EL-~kL~kEL~~rnkLn~~Qs~r  187 (332)
                      .+++-+.+.+|-.   +..-|.-.+++.+|    |.-||++|..-.+-.  -- -+++| ..|..++-+..-||.++.+.
T Consensus       112 ~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ek--ee-esq~LnrELaE~layqq~L~~eyQat  188 (401)
T PF06785_consen  112 KNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEK--EE-ESQTLNRELAEALAYQQELNDEYQAT  188 (401)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHh--HH-HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999987   44455555666555    555666665543210  00 12333 23445566778899999999


Q ss_pred             HHHhHHHhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHhh
Q psy7684         188 LHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLAS  228 (332)
Q Consensus       188 L~QQRe~L~kRn~Eva~mDrRI~ELreRL~kKKaa~qQk~~  228 (332)
                      +.+|+..|++|+.-+..++.++-+|---+   | .+.|++.
T Consensus       189 f~eq~~ml~kRQ~yI~~LEsKVqDLm~Ei---r-nLLQle~  225 (401)
T PF06785_consen  189 FVEQHSMLDKRQAYIGKLESKVQDLMYEI---R-NLLQLES  225 (401)
T ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHH---H-HHHHhhh
Confidence            99999999999999999999998764433   2 3445543

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=88.86  E-value=34  Score=36.02  Aligned_cols=69  Identities=14%  Similarity=0.235  Sum_probs=57.8

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcch-hhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy7684          78 HERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLS-SDLESIRALFNEKEKELCMAVAKVEELTHQLED  149 (332)
Q Consensus        78 ~ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~-~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~  149 (332)
                      .+++..+|.+++.-|.+|...|.--|-++-   .++.+. ++|..++.-+..-+.++..|.++.+.+..++..
T Consensus       200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~---~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~  269 (754)
T TIGR01005       200 APEIADLSKQSRDAEAEVAAYRAQSDLLMG---NNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQN  269 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCccc---CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345888999999999999999998887763   566676 889999988888888899999998888888765

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=87.95  E-value=30  Score=34.30  Aligned_cols=69  Identities=19%  Similarity=0.313  Sum_probs=51.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhccchhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHH
Q psy7684          79 ERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLED  149 (332)
Q Consensus        79 ekLrrLRe~~e~QEaKLrklRalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~  149 (332)
                      +.+..++.+++..|.+|...|.--|-++-.  ..+.+.++|..+..-+..-+.++..+.++.+.|..++..
T Consensus       168 ~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~--~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~  236 (498)
T TIGR03007       168 EQIKTYEKKLEAAENRLKAFKQENGGILPD--QEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGG  236 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            457889999999999999988766654322  123466778888888888888888888887777776654

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=84.81  E-value=3.4  Score=35.52  Aligned_cols=73  Identities=16%  Similarity=0.260  Sum_probs=63.2

Q ss_pred             HHHHHHHhhccchhhhhhccCcchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHH
Q psy7684          93 LKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRR  172 (332)
Q Consensus        93 aKLrklRalRGQVeq~rl~N~~L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~k  172 (332)
                      ..=.+|++|-+-.+.-+.+.|-|..+-|.+++.++.=+.+-...+.++.+|..++.+++++           .|.+|+.+
T Consensus        13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~-----------le~eK~ak   81 (107)
T PF09304_consen   13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN-----------LEDEKQAK   81 (107)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH
Confidence            3345688888889999999999999999999999999999999999999999999999875           56788887


Q ss_pred             -HHHH
Q psy7684         173 -ELMY  176 (332)
Q Consensus       173 -EL~~  176 (332)
                       +|.-
T Consensus        82 ~~l~~   86 (107)
T PF09304_consen   82 LELES   86 (107)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence             6543

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=80.08  E-value=28  Score=37.15  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=21.7

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccC
Q psy7684         121 SIRALFNEKEKELCMAVAKVEELTHQLEDLKRG  153 (332)
Q Consensus       121 qm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~  153 (332)
                      +|+.-+..=-.|..-.+.+|.+|.++|..|+.-
T Consensus        33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q   65 (617)
T PF15070_consen   33 QMSEEVRTLKEEKEHDISRVQELERSLSELKNQ   65 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333333334455688899999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1lwu_C	323	Fibrinogen gamma chain; heterotrimer, protein-pept	3e-04

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 22/231 (9%)

Query: 36   LEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRVEQQELKL 95
            L    VR + Q+  +       ++ +R        H+ + A        R  + ++EL  
Sbjct: 849  LRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL-- 906

Query: 96   RKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRT 155
            +KL+     V++ K  +I L + +  ++   +E+ KE    + K+  L            
Sbjct: 907  KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE--- 963

Query: 156  HQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEV-----------NS 204
                       L     E              + + R+ L + Q E            + 
Sbjct: 964  ---KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 205  VDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQL 255
             +  +SEL+E+    +   ++L  +++         +   +++LV +  QL
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM---EKKLVEETKQL 1068

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 34/199 (17%), Positives = 74/199 (37%), Gaps = 27/199 (13%)

Query: 19   LKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEH 78
            LK      E  +     LE+  ++ Q +ID Q +   +  +++  L+         + E 
Sbjct: 909  LKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE------ITYSTET 962

Query: 79   ERLRRLRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVA 138
            E+LR   +R+   E + +           N++ +  L  ++  +R   ++ + E      
Sbjct: 963  EKLRSDVERLRMSEEEAKNA--------TNRVLS--LQEEIAKLRKELHQTQTEKKTIEE 1012

Query: 139  KVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKK 198
              ++  H+ E L            L  +   L+ E    N+    Q   + +  E   K 
Sbjct: 1013 WADKYKHETEQLVS---------ELKEQNTLLKTEKEELNRRIHDQAKEITETME--KKL 1061

Query: 199  QAEVNSVDLRISELQERLQ 217
              E   ++L +++ + R Q
Sbjct: 1062 VEETKQLELDLNDERLRYQ 1080

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 38/233 (16%), Positives = 93/233 (39%), Gaps = 15/233 (6%)

Query: 33   LGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERL-RRLRDRVEQQ 91
            L ++       QA+ +  ++    +++    LK+ E +H Q+  E   L  +L+   E  
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908

Query: 92   ELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLK 151
                     L  +  + +     + + +E       + + E      ++ +L  QLE+ +
Sbjct: 909  AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968

Query: 152  RGRTH-QPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLRIS 210
              R   Q        +++ +  ++     + E QN +L ++R+ L   +  V+ +   ++
Sbjct: 969  AARQKLQLEKVTADGKIKKMEDDI----LIMEDQNNKLTKERKLL---EERVSDLTTNLA 1021

Query: 211  ELQERLQRKRLLNQQLASQLNS------NINSSQHQLPPGKQQLVAQNSQLTS 257
            E +E+ +    L  +  S ++           S+ +L   K++L  ++S L  
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHE 1074

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 28/214 (13%), Positives = 79/214 (36%), Gaps = 5/214 (2%)

Query: 30   ELTLGELEDMAVRQQAQIDS-QRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRRLRDRV 88
            E    +L+   V    +I   +  ++  ++Q  +  K+ +   ++V+     L    ++ 
Sbjct: 968  EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027

Query: 89   EQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLE 148
            +       K  ++  +++           +LE I+     +  +L   +A+++    +L+
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087

Query: 149  DLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSVDLR 208
                 +  +       A LE+   +     K   +    +   +E L  ++A  N  + +
Sbjct: 1088 AQLAKKEEELQ--AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145

Query: 209  ISELQERLQ--RKRLLNQQLASQLNSNINSSQHQ 240
              +L E L+  +  L +    +     +  S ++
Sbjct: 1146 KRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 38/232 (16%), Positives = 93/232 (40%), Gaps = 23/232 (9%)

Query: 33   LGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHE-RLRRLRDRVEQQ 91
            + E E+ + + QA+    +Q +   E++L   +    + Q      + +++++ D +   
Sbjct: 936  IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995

Query: 92   ELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLK 151
            E +  KL     +    +     L+++L           K      + + EL  +L+  +
Sbjct: 996  EDQNNKLTK---ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052

Query: 152  RGRTHQPSHPHLSAELENLRREL-----MYHNKLSEQQNVRLHQQRETLTKKQAEVNSVD 206
            + R           ELE ++R+L       H +++E Q  ++ + +  L KK+ E+ +  
Sbjct: 1053 KSR----------QELEKIKRKLEGESSDLHEQIAELQA-QIAELKAQLAKKEEELQAAL 1101

Query: 207  LRISELQER---LQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQL 255
             R+ +   +     +K    +   S L  ++ S +      ++Q    + +L
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 13/183 (7%)

Query: 27   EGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLKQHEARHQQVAAEHERLRR--- 83
            + +E  + +L      ++ +  +  +L    E  +  L+    + ++   E E+++R   
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 84   --LRDRVEQQELKLRKLRALRGQVDQNKMNNISLSSDLESIRALFNEKEKELCMAVAKVE 141
                D  EQ      ++  L+ Q+ + +    +  + LE   +  N   K++    + + 
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126

Query: 142  ELTHQLEDLKRGRTH-QPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRETLTKKQA 200
            +L   LE  K  R   +     LS ELE L+ EL       E        Q+E       
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEALKTEL-------EDTLDTTATQQELRGSDYK 1179

Query: 201  EVN 203
            + +
Sbjct: 1180 DDD 1182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 51/320 (15%), Positives = 95/320 (29%), Gaps = 85/320 (26%)

Query: 10  NRPYPSSSTLKAADLL----TEGVELTLGELED------MAVRQQAQIDSQRQLIAAKEQ 59
                 S TL+    L     E V+  + E+        M+  +  Q           EQ
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 60  RLR-------FLKQHEARHQQVAAEHERLRRLRDRVEQQELKLR------K----LRALR 102
           R R       F K + +R Q      + L  LR     + + +       K    L    
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP---AKNVLIDGVLGSGKTWVALDVCL 172

Query: 103 GQVDQNKMNN----ISLS------SDLESIRALFNEKEKELCMAVAKVEELTHQLEDLK- 151
               Q KM+     ++L       + LE ++ L  + +            +  ++  ++ 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 152 RGRTHQPSHPHLSA--ELENLR------------------RELMYHNKLSEQ--QNVRLH 189
             R    S P+ +    L N++                  R     + LS     ++ L 
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 190 QQRETLTKKQAE---VNSVDLRISEL-------------------QERLQRKRLLNQQLA 227
               TLT  + +   +  +D R  +L                   ++ L           
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 228 SQLNSNINSSQHQLPPGKQQ 247
            +L + I SS + L P + +
Sbjct: 353 DKLTTIIESSLNVLEPAEYR 372

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 52/329 (15%), Positives = 94/329 (28%), Gaps = 86/329 (26%)

Query: 6   MTLRNRPYPSSSTLKAADLLTEGVELTLGELEDMAVRQQAQIDSQRQLIAAKEQRLRFLK 65
           + L+N   P +       LL + ++       D +   + +I S       + +  R LK
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHS------IQAELRRLLK 239

Query: 66  QHEARHQQVAAEHER-LRRLRDRVEQQELKLRKLRALRGQV-------DQNKMNNISLSS 117
                       +E  L  L + V+  +       A             +   + +S ++
Sbjct: 240 SKP---------YENCLLVLLN-VQNAKA----WNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 118 ----DLESIRALFNEKE-KELCMAVAKVEELTHQLEDLKR-GRTHQPSHPHLSAEL---- 167
                L+         E K L     K   L  + +DL R   T  P    + AE     
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLL---LKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 168 ----ENLRRELMYHNKLSEQQNVRLHQQRETLTKKQAEVNSV---DLRISE--LQ----- 213
               +N +   +  +KL+      L+       +K  +  SV      I    L      
Sbjct: 341 LATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 214 ----------ERLQRKRLLNQQLASQLNSNINSSQHQLPPGKQQLVAQNSQLTSAHINNV 263
                      +L +  L+ +Q           S   +P    +L  +     + H + V
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQP--------KESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 264 NSLFRSMTSSNIAAVAPYLHVPSKPNLDN 292
           +         NI            P LD 
Sbjct: 451 DHY-------NIPKTFDSDD-LIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 28/254 (11%), Positives = 77/254 (30%), Gaps = 37/254 (14%)

Query: 78  HERLRRLRDRVEQQELKLRKLRALRGQVDQNK-MNNISLSSDLESIRALFNEKEKELCMA 136
           H     +     + + + + +      V ++  ++N       +  +++ +++E +  + 
Sbjct: 1   HHHHHHMDFETGEHQYQYKDIL----SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM 56

Query: 137 VAKVEELTHQLEDLKR-----------GRTHQPSHPHLSAELENLRRELMYHNKLSEQQN 185
                  T +L                    + ++  L + ++  +R+     ++  +Q 
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 186 VRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQLP-PG 244
            RL+   +   K    V+ +     +L++ L            +L    N     +   G
Sbjct: 117 DRLYNDNQVFAKYN--VSRLQP-YLKLRQALL-----------ELRPAKNVLIDGVLGSG 162

Query: 245 KQQLVAQNSQLTSAHINNVNSLF-----RSMTSSNIAAVAPYLHVPSKPNLDNTHAIFQN 299
           K  +                 +F        +   +  +   L     PN  +      N
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 300 QR-RIESGHNQLNK 312
            + RI S   +L +
Sbjct: 223 IKLRIHSIQAELRR 236

>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C* Length = 323

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 10/70 (14%), Positives = 22/70 (31%)

Query: 182 EQQNVRLHQQRETLTKKQAEVNSVDLRISELQERLQRKRLLNQQLASQLNSNINSSQHQL 241
           +     + +  E +   +    S D +I EL E  +  +    +L  QL     +     
Sbjct: 1   DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPC 60

Query: 242 PPGKQQLVAQ 251
                  ++ 
Sbjct: 61  QDTTANKISP 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	83.85

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=83.85  E-value=23  Score=31.45  Aligned_cols=98  Identities=17%  Similarity=0.241  Sum_probs=69.4

Q ss_pred             chhhhHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCCCCcchHHHHHHHHHHHHHhhhcHHHhHHHHHhHHH
Q psy7684         115 LSSDLESIRALFNEKEKELCMAVAKVEELTHQLEDLKRGRTHQPSHPHLSAELENLRRELMYHNKLSEQQNVRLHQQRET  194 (332)
Q Consensus       115 L~~Eieqm~~LF~eKqkEL~~AvskVeeLt~QLE~LR~~r~~~~~~~~aa~EL~kL~kEL~~rnkLn~~Qs~rL~QQRe~  194 (332)
                      +-.+++.+..-....+.++....++++....+|...++           ..|++.|-+|+....+-...-.+.+..--+.
T Consensus        51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~-----------~kE~~aL~kEie~~~~~i~~lE~eile~~e~  119 (256)
T 3na7_A           51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS-----------ERELRSLNIEEDIAKERSNQANREIENLQNE  119 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS-----------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777777888888888888899988888865442           3577888888877777776666666666666


Q ss_pred             hhhhhhhHHhHHHhHHHHHHHHHHHHHHH
Q psy7684         195 LTKKQAEVNSVDLRISELQERLQRKRLLN  223 (332)
Q Consensus       195 L~kRn~Eva~mDrRI~ELreRL~kKKaa~  223 (332)
                      +.....+++....++++++..|..+++..
T Consensus       120 ie~~~~~l~~~~~~l~~~~~~l~~~~~~~  148 (256)
T 3na7_A          120 IKRKSEKQEDLKKEMLELEKLALELESLV  148 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00