Psyllid ID: psy7785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
Protein Sequence
MEMAFNQQIANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFILA
Secondary Structure (PSIPRED)
cccHHHHHHHHcccccccccEEEcccHHccccHHHHHHHHHHcccccEEEEEEEEccccccccccccccccEEEEcccccHHHHHHHHHcccEEcccccccccEEEEEEEEccccccccEEEEEEEEcccccEEEEEccccccHHHHHHHHccccEEEEEccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEEcccEEEcccccEEEEEEEEcccccccccccccccccccccccHHHHHHHHccccEEEccccEEEEEccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHccccEEEcccHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEEEccccHHHHHHHHHHccccEEEcccHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHccccEEEEEccccccHHHcEEccccEccEEEEccHHHHHHHHHcccccEEEccccccccEEcccEEEEEcccccEEEEEEEEEEHHHcEEEEEEEccccccHHHHHHHcHHHcEEEEcEcccEccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEEccccEEEcccccEEcHHHHHHcHHHHHHccHHHccHHHHHHHcccEEEEEccccEEEEEccHHHHHHHHHHHHHccccEcEEEEEcccccHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHcccccEEEcccHHHHHHHHHHc
Coil and Loop (DISEMBL)
MEMAFNQQIANFSylvkpvstvhstdkvCLEDARTATNILKDLNFKEYVIKAQILaggrglghfdngfksgvhftnnvqdippILEKmighklitkqtpktginvNKVMVAKSVNITRETYFCIVQdrlhngpvviispsggtdienvaaktphlvktipidvhQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSvdatqleinplvetderevisvdakinfddnaefrqknifsqnevsesdprevdaskynlnyvgmdgnigclvngaglAMATMDIIKlhggepanfldvgggvneESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPlvvrlegtnvqegkrildesklplifaSDLDEAASLVNACKSfklsiplvvrlegtnvqegkrildesklplifaSDLDEAASLVNACKSfklsiplvvrlegtnvqegkrildesklplifaSDLDEAANWFILA
Flexible Loop (DISEMBL)
MEMAFNQQIANFSYLVKPVSTVHSTDKVCLEDARTAtnilkdlnfkeYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLItkqtpktginvnKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEInplvetderevISVDAkinfddnaefrqknifsqnevsesdpreVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVvrlegtnvqegkrildeskLPLIFASDLDEAASLVNACKSfklsiplvvrlegtnvqegkrildeskLPLIFASDLDEAASLVNACKSfklsiplvvrlegtnvqegkrildesklplifasdldeaanWFILA
Low Complexity Region (SEG)
MEMAFNQQIANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFILA
Disordered region (IsUnstruct)
******QQIANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEF**********************KYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFIL*
Disordered Region (DISOPRED)
MEMAFNQQIANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFILA
Disordered Region (DISEMBL)
MEMAFNQQIANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQ**********VDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFILA
Disordered Region (DISPRO)
****FNQQIANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFILA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMAFNQQIANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFILA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	525	2.2.26 [Sep-21-2011]
Q9Z2I8	433	Succinyl-CoA ligase [GDP-	yes	N/A	0.678	0.822	0.519	1e-113
Q96I99	432	Succinyl-CoA ligase [GDP-	yes	N/A	0.678	0.824	0.521	1e-112
P53589	415	Probable succinyl-CoA lig	yes	N/A	0.657	0.831	0.539	1e-111
P53590	433	Succinyl-CoA ligase [GDP-	yes	N/A	0.681	0.826	0.519	1e-111
Q9YI36	391	Succinyl-CoA ligase [GDP-	N/A	N/A	0.681	0.915	0.508	1e-110
Q3MHX5	432	Succinyl-CoA ligase [GDP-	yes	N/A	0.678	0.824	0.514	1e-110
Q869S7	420	Succinyl-CoA ligase [GDP-	yes	N/A	0.655	0.819	0.515	1e-104
Q84LB6	417	Succinyl-CoA ligase [ADP-	N/A	N/A	0.659	0.829	0.497	1e-101
O82662	421	Succinyl-CoA ligase [ADP-	yes	N/A	0.659	0.821	0.492	1e-100
Q6K9N6	422	Succinyl-CoA ligase [ADP-	yes	N/A	0.670	0.834	0.484	2e-99

>sp|Q9Z2I8|SUCB2_MOUSE Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Suclg2 PE=2 SV=3

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/389 (51%), Positives = 271/389 (69%), Gaps = 33/389 (8%)

Query: 33  ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92
           A+ A    K LN KE V+KAQILAGGRG G F++G K GVH T + + +  + ++MIG+ 
Sbjct: 66  AKEALEAAKRLNAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPKVVGELAQQMIGYN 125

Query: 93  LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT 152
           L TKQTPK G+ VNKVMVA++++I+RETY  I+ DR HNGPV++ SP GG DIE VAA +
Sbjct: 126 LATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSHNGPVIVGSPQGGVDIEEVAASS 185

Query: 153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFL 212
           P L+    ID+ +GI +S AQ                                 ++A+ L
Sbjct: 186 PELIFKEQIDIFEGIKDSQAQ---------------------------------RMAENL 212

Query: 213 EFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQK 272
            F G LK +AA ++ KL++LFL +DATQ+E+NP  ET E +V+  DAKINFDDNAEFRQK
Sbjct: 213 GFLGSLKNQAADQITKLYHLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQK 272

Query: 273 NIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFL 332
           +IF+ ++ SE++P E +A++Y+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFL
Sbjct: 273 DIFAMDDKSENEPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFL 332

Query: 333 DVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVV 392
           D+GGGV E  + +AF++++SD  V+ ILVN+FGGIVNCA IA G+  AC+  +L +PLVV
Sbjct: 333 DLGGGVKEAQVYEAFKLLTSDPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVV 392

Query: 393 RLEGTNVQEGKRILDESKLPLIFASDLDE 421
           RLEGTNVQE + IL  S LP+  A DL++
Sbjct: 393 RLEGTNVQEAQNILKSSGLPITSAVDLED 421

Catalyzes the GTP-dependent ligation of succinate and CoA to form succinyl-CoA.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 4

>sp|Q96I99|SUCB2_HUMAN Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLG2 PE=1 SV=2

 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/389 (52%), Positives = 270/389 (69%), Gaps = 33/389 (8%)

Query: 33  ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92
           A  A    K LN KE V+KAQILAGGRG G F++G K GVH T +   +  + ++MIG+ 
Sbjct: 65  ANEALEAAKRLNAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPNVVGQLAKQMIGYN 124

Query: 93  LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT 152
           L TKQTPK G+ VNKVMVA++++I+RETY  I+ DR  NGPV++ SP GG DIE VAA  
Sbjct: 125 LATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASN 184

Query: 153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFL 212
           P L+    ID+ +GI +S AQ                                 ++A+ L
Sbjct: 185 PELIFKEQIDIFEGIKDSQAQ---------------------------------RMAENL 211

Query: 213 EFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQK 272
            F G LK++AA ++ KL+NLFL +DATQ+E+NP  ET E +V+  DAKINFDDNAEFRQK
Sbjct: 212 GFVGPLKSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQK 271

Query: 273 NIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFL 332
           +IF+ ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFL
Sbjct: 272 DIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFL 331

Query: 333 DVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVV 392
           D+GGGV E  + QAF+++++D  V+ ILVN+FGGIVNCA IA G+  AC+  +L +PLVV
Sbjct: 332 DLGGGVKEAQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVV 391

Query: 393 RLEGTNVQEGKRILDESKLPLIFASDLDE 421
           RLEGTNVQE ++IL+ S LP+  A DL++
Sbjct: 392 RLEGTNVQEAQKILNNSGLPITSAIDLED 420

Catalyzes the GTP-dependent ligation of succinate and CoA to form succinyl-CoA.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 4

>sp|P53589|SUCB2_CAEEL Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C50F7.4 PE=3 SV=1

 Score =  404 bits (1037), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/380 (53%), Positives = 260/380 (68%), Gaps = 35/380 (9%)

Query: 47  EYVIKAQILAGGRGLGHFDNGFKS--GVHFTNNVQDIPPILEKMIGHKLITKQTPKTGIN 104
           EYV+KAQILAGGRG G F NG K   GV  T         +++MIG +L+TKQT   G+ 
Sbjct: 61  EYVVKAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVR 120

Query: 105 VNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVH 164
           V+KVM+A+ V+I RETY  ++ DR  NGPVV+ SP GG DIE VA KTP  +   PID+ 
Sbjct: 121 VDKVMIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQ 180

Query: 165 QGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAAT 224
            G+TE                        Q L          KIA  L+F G L   AA 
Sbjct: 181 MGMTEG-----------------------QSL----------KIAKDLQFEGKLIGVAAQ 207

Query: 225 EVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESD 284
           E+++L++LF++VDATQ+EINPLVET +  V  VDAK+NFDD+A +RQK IF+     E D
Sbjct: 208 EIKRLYDLFIAVDATQVEINPLVETADGRVFCVDAKMNFDDSAAYRQKEIFAYETFEEHD 267

Query: 285 PREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESII 344
           PREVDA ++NLNY+GMDGNI CLVNGAGLAMATMD+IKLHGGEPANFLDVGG V E+++ 
Sbjct: 268 PREVDAHQFNLNYIGMDGNIACLVNGAGLAMATMDLIKLHGGEPANFLDVGGAVTEDAVF 327

Query: 345 QAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR 404
            A RII+SD  VKC+L+N+FGGIVNCATIA G+V+A     L++P+VVRLEGTNV   K+
Sbjct: 328 NAVRIITSDPRVKCVLINIFGGIVNCATIANGVVSAVNKIGLNVPMVVRLEGTNVDAAKQ 387

Query: 405 ILDESKLPLIFASDLDEAAS 424
           I+ +S L ++ A++LDEAA+
Sbjct: 388 IMKKSGLKILTANNLDEAAA 407

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 4

>sp|P53590|SUCB2_PIG Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLG2 PE=1 SV=2

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/391 (51%), Positives = 269/391 (68%), Gaps = 33/391 (8%)

Query: 33  ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92
           A  A    K LN KE V+KAQILAGGRG G F +G K GVH T + + +  + ++MIG+ 
Sbjct: 66  ANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYN 125

Query: 93  LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT 152
           L TKQTPK G+ VNKVMVA++++I+RETY  I+ DR  NGPV++ SP GG DIE VAA  
Sbjct: 126 LATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASN 185

Query: 153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFL 212
           P L+    ID+ +GI +S AQ                                 ++A+ L
Sbjct: 186 PELIFKEQIDIIEGIKDSQAQ---------------------------------RMAENL 212

Query: 213 EFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQK 272
            F G L+ +AA +++KL+NLFL +DATQ+E+NP  ET E +V+  DAKINFDDNAEFRQK
Sbjct: 213 GFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQK 272

Query: 273 NIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFL 332
           +IF+ ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFL
Sbjct: 273 DIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFL 332

Query: 333 DVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVV 392
           D+GGGV E  + QAF+++++D  V+ ILVN+FGGIVNCA IA G+  AC+  +L +PLVV
Sbjct: 333 DLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVV 392

Query: 393 RLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           RLEGTNV E + IL  S LP+  A DL++AA
Sbjct: 393 RLEGTNVHEAQNILTNSGLPITSAVDLEDAA 423

Catalyzes the GTP-dependent ligation of succinate and CoA to form succinyl-CoA.

Sus scrofa (taxid: 9823)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 4

>sp|Q9YI36|SUCB2_COLLI Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial (Fragment) OS=Columba livia GN=SUCLG2 PE=1 SV=1

 Score =  399 bits (1026), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/391 (50%), Positives = 269/391 (68%), Gaps = 33/391 (8%)

Query: 31  EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG 90
           + A  A    + L  KE V+KAQILAGGRG G F++G K GVH T + + +  + ++MIG
Sbjct: 22  DSANDALEAAQRLKAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPKIVEQLAKQMIG 81

Query: 91  HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAA 150
           + L TKQTPK G+ V KVMVA+++NI+RETYF I+ DR  NGPV++ SP GG DIE VA 
Sbjct: 82  YNLSTKQTPKDGVTVKKVMVAEALNISRETYFAILMDRACNGPVMVGSPQGGVDIEEVAV 141

Query: 151 KTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIAD 210
            +P L+    ID+ +GI +  A  +A  L F+G L+ +AA +++KL+N            
Sbjct: 142 TSPELIFKEEIDIFEGIKDHQALQMAKNLGFKGPLQQQAADQIKKLYN------------ 189

Query: 211 FLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFR 270
                                LFL +DATQ+E+NP  ET E +V+  DAKINFDDNAEFR
Sbjct: 190 ---------------------LFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 228

Query: 271 QKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPAN 330
           QK IF+ ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PAN
Sbjct: 229 QKEIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIISLNGGKPAN 288

Query: 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPL 390
           FLD+GGGV E  + QAF+++++D  V+ ILVN+FGGIVNCA IA G+  AC+  +L +PL
Sbjct: 289 FLDLGGGVKEAQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITRACRELELKVPL 348

Query: 391 VVRLEGTNVQEGKRILDESKLPLIFASDLDE 421
           VVRLEGTNV E +RIL+ES LP++ A+DL++
Sbjct: 349 VVRLEGTNVHEAQRILNESGLPIMSANDLED 379

Catalyzes the GTP-dependent ligation of succinate and CoA to form succinyl-CoA.

Columba livia (taxid: 8932)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 4

>sp|Q3MHX5|SUCB2_BOVIN Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLG2 PE=2 SV=1

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/389 (51%), Positives = 266/389 (68%), Gaps = 33/389 (8%)

Query: 33  ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92
           A  A    K LN KE V+KAQILAGGRG G F +G K GVH T + + +  + ++MIG+ 
Sbjct: 65  ANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPKVVGQLAKQMIGYN 124

Query: 93  LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT 152
           L TKQTPK G+ V KVMVA++++I+RETY  I+ DR  NGPV++ SP GG DIE VAA  
Sbjct: 125 LATKQTPKEGVKVKKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASN 184

Query: 153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFL 212
           P L+    ID+ +GI +S AQ                                 ++A+ L
Sbjct: 185 PELIFKEQIDIIEGIKDSQAQ---------------------------------RMAENL 211

Query: 213 EFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQK 272
            F G LK +AA +++KL+NLFL +DATQ+E+NP  ET E +V+  DAKINFDDNAEFRQK
Sbjct: 212 GFLGPLKNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQK 271

Query: 273 NIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFL 332
           +IF+ ++ SE++P E +A++Y+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFL
Sbjct: 272 DIFAMDDKSENEPIENEAARYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFL 331

Query: 333 DVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVV 392
           D+GGGV E  + QAF+++++D  V+ ILVN+FGGIVNCA IA G+  AC+  +L +PLVV
Sbjct: 332 DLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVV 391

Query: 393 RLEGTNVQEGKRILDESKLPLIFASDLDE 421
           RLEGTNV E + IL  S LP+  A DL++
Sbjct: 392 RLEGTNVHEAQNILSNSGLPITSAVDLED 420

Catalyzes the GTP-dependent ligation of succinate and CoA to form succinyl-CoA.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 4

>sp|Q869S7|SUCB2_DICDI Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsB PE=3 SV=1

 Score =  380 bits (976), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/378 (51%), Positives = 253/378 (66%), Gaps = 34/378 (8%)

Query: 47  EYVIKAQILAGGRGLGHF-DNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINV 105
           E V+KAQ+ AGGRG G F + GFK GVH     ++   + ++M+G  L+TKQT K G  V
Sbjct: 67  ELVVKAQVHAGGRGKGSFIETGFKGGVHLCKTGKEAERLCDEMLGKHLVTKQTTKEGTKV 126

Query: 106 NKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQ 165
             VM+A+SV+  RE YF IV DR + GPV+I SP GG DIE+VA +TP L+   PID+ +
Sbjct: 127 QSVMLAESVDPKRELYFAIVMDRKYGGPVMIASPQGGVDIESVAEETPDLIFKEPIDIVK 186

Query: 166 GITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATE 225
           GI     +++A+ L F G+ KAK A +                                +
Sbjct: 187 GIRPEQTKNLAEKLGFTGE-KAKIAQQ--------------------------------Q 213

Query: 226 VQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDP 285
           ++ L+ LF+  DATQ+EINP  ET + +VI +DAKINFDDNA FRQK IF   + +E DP
Sbjct: 214 MENLYQLFIKSDATQVEINPFAETTDGQVICMDAKINFDDNASFRQKEIFEMRDTAEEDP 273

Query: 286 REVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQ 345
           REV+A K+ LNY+G+DGNIGC+VNGAGLAMATMDIIKL GG PANFLDVGG  +E+++ +
Sbjct: 274 REVEAGKFGLNYIGLDGNIGCMVNGAGLAMATMDIIKLKGGIPANFLDVGGSASEQAVTE 333

Query: 346 AFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRI 405
           AF+I++ D  VKC+LVN+FGGI+ C  IA G+VNA K   L IPLVVRLEGTNV  GK I
Sbjct: 334 AFKILTKDPRVKCLLVNIFGGIMKCDIIASGIVNASKQVGLKIPLVVRLEGTNVNIGKEI 393

Query: 406 LDESKLPLIFASDLDEAA 423
           L++S L +  ASDLD+AA
Sbjct: 394 LEKSGLNITSASDLDDAA 411

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 4

>sp|Q84LB6|SUCB_SOLLC Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum PE=1 SV=1

 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/380 (49%), Positives = 251/380 (66%), Gaps = 34/380 (8%)

Query: 44  NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGI 103
           N  E V+K+Q+LAGGRGLG F NGF+ GVH     Q    I  KM+G  L+TKQT   G 
Sbjct: 64  NQSEVVVKSQVLAGGRGLGTFKNGFQGGVHIVKADQ-AEDIASKMLGQILVTKQTGAQGK 122

Query: 104 NVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDV 163
            V+KV + + +++  E YF I+ DR   GP++I    GGT IE++A K P ++  +PIDV
Sbjct: 123 VVSKVYLCEKMSLVNEMYFSIILDRATAGPLIIACRKGGTSIEDLAEKFPDMIIKVPIDV 182

Query: 164 HQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAA 223
            +GI+++ A  + D                          LA K+AD    R D    + 
Sbjct: 183 FKGISDADAAKVVD-------------------------GLAPKVAD----RND----SI 209

Query: 224 TEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSES 283
            +V+KL+ LF   D T LEINPL ET + ++++ DAK+NFDDNA +RQK IFS  + S+ 
Sbjct: 210 EQVKKLYKLFCETDCTMLEINPLAETSDNKLVAADAKLNFDDNAAYRQKEIFSLRDSSQE 269

Query: 284 DPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESI 343
           DPREV A+K +LNY+G+DG IGC+VNGAGLAMATMDIIKLHGG PANFLDVGG   E  +
Sbjct: 270 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNATEGQV 329

Query: 344 IQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403
           ++AF+I+++D  VK ILVN+FGGI+ C  IA G+VNA K  +L +P++VRLEGTNV++GK
Sbjct: 330 VEAFKILTADEKVKAILVNIFGGIMKCDVIASGIVNAAKQVQLKVPVIVRLEGTNVEQGK 389

Query: 404 RILDESKLPLIFASDLDEAA 423
           RIL ES + LI A DLD+AA
Sbjct: 390 RILKESGMKLITAEDLDDAA 409

Solanum lycopersicum (taxid: 4081)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|O82662|SUCB_ARATH Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/380 (49%), Positives = 245/380 (64%), Gaps = 34/380 (8%)

Query: 44  NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGI 103
           N  E V+K+QILAGGRGLG F +G K GVH      +   I  KM+G  L+TKQT   G 
Sbjct: 67  NESELVVKSQILAGGRGLGTFKSGLKGGVHIVKR-DEAEEIAGKMLGQVLVTKQTGPQGK 125

Query: 104 NVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDV 163
            V+KV + + +++  E YF I+ DR   GP++I    GGT IE++A K P ++  +PIDV
Sbjct: 126 VVSKVYLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIKVPIDV 185

Query: 164 HQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAA 223
             GIT+  A  + D                          LA K AD        +  + 
Sbjct: 186 FAGITDEDAAKVVD-------------------------GLAPKAAD--------RKDSI 212

Query: 224 TEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSES 283
            +V+KL+ LF   D T LEINPL ET   ++++ DAK+NFDDNA FRQK +F+  + ++ 
Sbjct: 213 EQVKKLYELFRKTDCTMLEINPLAETSTNQLVAADAKLNFDDNAAFRQKEVFAMRDPTQE 272

Query: 284 DPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESI 343
           DPREV A+K +LNY+G+DG IGC+VNGAGLAMATMDIIKLHGG PANFLDVGG  +E  +
Sbjct: 273 DPREVAAAKVDLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEHQV 332

Query: 344 IQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403
           ++AF+I++SD  VK ILVN+FGGI+ C  IA G+VNA K   L +P+VVRLEGTNV++GK
Sbjct: 333 VEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKEVALKVPVVVRLEGTNVEQGK 392

Query: 404 RILDESKLPLIFASDLDEAA 423
           RIL ES + LI A DLD+AA
Sbjct: 393 RILKESGMKLITADDLDDAA 412

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q6K9N6|SUCB_ORYSJ Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0621700 PE=1 SV=1

 Score =  363 bits (932), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/388 (48%), Positives = 252/388 (64%), Gaps = 36/388 (9%)

Query: 38  NILKDL--NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95
           N LK++  + KE V+K+QILAGGRGLG F +G + GVH     ++   +  KM+G  L+T
Sbjct: 60  NTLKNVFPSEKEIVVKSQILAGGRGLGTFKSGLQGGVHIVK-AEEAESLAAKMLGQILVT 118

Query: 96  KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHL 155
           KQT   G  V+KV + + +++  E YF I  DR   GP++I    GGT IE++A K P +
Sbjct: 119 KQTGPQGKIVSKVYLCEKLSLVNEMYFAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDM 178

Query: 156 VKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFR 215
           +  +PIDV +GIT+  A  + D                          LA K AD     
Sbjct: 179 IIKVPIDVFKGITDDDAAKVVD-------------------------GLAPKTAD----- 208

Query: 216 GDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIF 275
              +  +  +++KL+ LF   D T LEINPL ET + ++++ DAK+NFDDNA FRQK IF
Sbjct: 209 ---RQSSIEQIKKLYELFCKSDCTLLEINPLAETADNKLVAADAKLNFDDNAAFRQKEIF 265

Query: 276 SQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVG 335
           +  + ++ DPREV A+K +LNY+G+DG IGC+VNGAGLAMATMDIIKLHGG PANFLDVG
Sbjct: 266 AMRDTTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVG 325

Query: 336 GGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLE 395
           G  +E  +++AF+I++SD  VK ILVN+FGGI+ C  IA G+VNA K   L +P+VVRLE
Sbjct: 326 GSASEGQVVEAFKILTSDDRVKAILVNIFGGIMKCDVIASGIVNAAKQVDLKVPVVVRLE 385

Query: 396 GTNVQEGKRILDESKLPLIFASDLDEAA 423
           GTNV +GKRIL ES + LI A DLD+AA
Sbjct: 386 GTNVDQGKRILKESGMTLITAEDLDDAA 413

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
91095067	414	PREDICTED: similar to succinyl-coa synth	0.687	0.871	0.615	1e-137
157110382	421	succinyl-coa synthetase beta chain [Aede	0.683	0.852	0.599	1e-133
158292075	423	AGAP004352-PA [Anopheles gambiae str. PE	0.683	0.848	0.604	1e-132
170038855	419	succinyl-CoA ligase beta-chain, mitochon	0.683	0.856	0.604	1e-131
193713938	424	PREDICTED: succinyl-CoA ligase [GDP-form	0.687	0.851	0.598	1e-131
321476532	420	hypothetical protein DAPPUDRAFT_306482 [	0.699	0.873	0.58	1e-130
195126843	420	GI13181 [Drosophila mojavensis] gi|19391	0.687	0.859	0.610	1e-130
195377210	415	GJ11957 [Drosophila virilis] gi|19415454	0.687	0.869	0.6	1e-130
195491992	416	GE20552 [Drosophila yakuba] gi|194179903	0.687	0.867	0.594	1e-129
312374636	404	hypothetical protein AND_15704 [Anophele	0.683	0.888	0.586	1e-129

>gi|91095067|ref|XP_972655.1| PREDICTED: similar to succinyl-coa synthetase beta chain [Tribolium castaneum] gi|270014754|gb|EFA11202.1| hypothetical protein TcasGA2_TC005166 [Tribolium castaneum]

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/395 (61%), Positives = 295/395 (74%), Gaps = 34/395 (8%)

Query: 29  CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKM 88
           C+ D +  +   K  N KEYVIKAQILAGGRG GHF NGFK GVH T    ++  I++KM
Sbjct: 47  CMVDDKGCSEFDK-FNVKEYVIKAQILAGGRGKGHFTNGFKGGVHVTEKRNEVDDIVKKM 105

Query: 89  IGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENV 148
           +GH+LITKQTPK GI V K+M A+SVNI RETY CI+ DR  NGPV+I SP+GG DIE V
Sbjct: 106 LGHRLITKQTPKDGIEVKKIMFAESVNIQRETYVCILMDRQKNGPVLIASPAGGVDIEAV 165

Query: 149 AAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKI 208
           A KTPHL+K IPID+H+G+T+S+A ++A+FLEF+G LK  AA E++KLW           
Sbjct: 166 AEKTPHLIKNIPIDIHKGVTDSMANEVAEFLEFKGPLKGLAAAELKKLW----------- 214

Query: 209 ADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAE 268
                                   FL+VDATQLEINPLVETD  +VI+VDAKINFDDNA+
Sbjct: 215 ----------------------QFFLAVDATQLEINPLVETDNNKVIAVDAKINFDDNAQ 252

Query: 269 FRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEP 328
           FRQK+IF+  +V+ESDPREV+A+KYNLNY+GM GNIGCLVNGAGLAMATMDIIKLHGG+P
Sbjct: 253 FRQKDIFALEDVTESDPREVEAAKYNLNYIGMTGNIGCLVNGAGLAMATMDIIKLHGGDP 312

Query: 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSI 388
           ANFLDVGG V EE +  AF I++SD NVKCILVNVFGGIVNCATIA G+V A K+ KL +
Sbjct: 313 ANFLDVGGSVREEQVKAAFNILTSDKNVKCILVNVFGGIVNCATIANGIVGAMKAMKLEV 372

Query: 389 PLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           PL+VRLEGTN  E +RI+ +S + +  A +LD+AA
Sbjct: 373 PLIVRLEGTNAAEARRIIKDSGMNIQTAENLDDAA 407

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157110382|ref|XP_001651078.1| succinyl-coa synthetase beta chain [Aedes aegypti] gi|157110384|ref|XP_001651079.1| succinyl-coa synthetase beta chain [Aedes aegypti] gi|108878750|gb|EAT42975.1| AAEL005552-PA [Aedes aegypti] gi|403182723|gb|EJY57594.1| AAEL005552-PB [Aedes aegypti]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/392 (59%), Positives = 290/392 (73%), Gaps = 33/392 (8%)

Query: 32  DARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH 91
           + +   ++L+D N  EYV+KAQILAGGRG GHFDNGFK GVH T +   + P++EKM+GH
Sbjct: 55  EGKKDESVLQDFNVNEYVVKAQILAGGRGKGHFDNGFKGGVHITKDRSQVIPLVEKMVGH 114

Query: 92  KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAK 151
           +LITKQTPK GI V KVMVA S+NI RETY  IV DR HNGPV+I SP+GG DIE VA +
Sbjct: 115 RLITKQTPKDGIMVKKVMVADSINIVRETYLSIVMDREHNGPVLIASPAGGMDIEAVAEE 174

Query: 152 TPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADF 211
           TP  +KTIP+ V  GIT + A+++A FLEF+G+L  KAA E++KL               
Sbjct: 175 TPDKIKTIPVSVVDGITHAQAEEVARFLEFKGNLVQKAAAEIEKL--------------- 219

Query: 212 LEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQ 271
                             ++LF+ VDATQ+EINPL ETD+  VISVDAK+NFDDNA+FRQ
Sbjct: 220 ------------------YHLFVKVDATQIEINPLAETDDGRVISVDAKLNFDDNAQFRQ 261

Query: 272 KNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANF 331
           K+IF+ +   ++DP+E++A KYNLNY+ M+GNIGCLVNGAGLAMATMDIIKL+GG PANF
Sbjct: 262 KDIFAMDVHEDTDPKEIEAHKYNLNYIAMEGNIGCLVNGAGLAMATMDIIKLNGGSPANF 321

Query: 332 LDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLV 391
           LDVGG V EE +++AF+I++SD NVK ILVNVFGGIVNCATIA G+VNA K+  L +PLV
Sbjct: 322 LDVGGNVKEEQVLKAFQILTSDPNVKAILVNVFGGIVNCATIANGIVNATKTIGLKVPLV 381

Query: 392 VRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           VRLEGTNV   K+IL ES L +  A DLDEAA
Sbjct: 382 VRLEGTNVDAAKKILKESGLKIESAHDLDEAA 413

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292075|ref|XP_313633.4| AGAP004352-PA [Anopheles gambiae str. PEST] gi|347971751|ref|XP_003436791.1| AGAP004352-PB [Anopheles gambiae str. PEST] gi|157017261|gb|EAA09142.4| AGAP004352-PA [Anopheles gambiae str. PEST] gi|333469012|gb|EGK97149.1| AGAP004352-PB [Anopheles gambiae str. PEST]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/392 (60%), Positives = 288/392 (73%), Gaps = 33/392 (8%)

Query: 32  DARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH 91
           + +   ++LKD +  EYV+KAQILAGGRG GHFDNGFK GVH T N  ++ P++EKM+GH
Sbjct: 55  EGKKDADVLKDFDVNEYVVKAQILAGGRGKGHFDNGFKGGVHITKNRAEVIPLVEKMVGH 114

Query: 92  KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAK 151
           KLITKQTPK GI V KVMVA S+NI RETY  IV DR HNGPV+I SP GG DIE VA +
Sbjct: 115 KLITKQTPKDGILVKKVMVADSINIVRETYLSIVMDREHNGPVLIASPDGGMDIEAVAEE 174

Query: 152 TPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADF 211
           TP+ +KTIPID+  GI+   A D+A FLEF+G L  KAA E+ K                
Sbjct: 175 TPNRIKTIPIDITSGISREQAIDVARFLEFKGFLVDKAADEITK---------------- 218

Query: 212 LEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQ 271
                            L+ LF  VDA Q+EINPL ETD+  VISVDAK+NFDDNA+FRQ
Sbjct: 219 -----------------LYGLFTKVDAVQIEINPLAETDDGRVISVDAKLNFDDNAQFRQ 261

Query: 272 KNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANF 331
           K+IF+     ++DP+EV+ASKYNLNY+ M+GNIGCLVNGAGLAMATMDIIKL+GG PANF
Sbjct: 262 KDIFAMEVHEDTDPKEVEASKYNLNYIAMEGNIGCLVNGAGLAMATMDIIKLNGGSPANF 321

Query: 332 LDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLV 391
           LDVGG V E+ +++AF+I++SD+NVK ILVNVFGGIVNCATIA G+VNA K+  L +PL+
Sbjct: 322 LDVGGNVKEDQVLKAFQILTSDTNVKAILVNVFGGIVNCATIANGIVNATKTMNLQVPLI 381

Query: 392 VRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           VRLEGTNVQ  K+IL++S L +  A DLDEAA
Sbjct: 382 VRLEGTNVQAAKKILEQSGLKIESAHDLDEAA 413

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170038855|ref|XP_001847263.1| succinyl-CoA ligase beta-chain, mitochondrial [Culex quinquefasciatus] gi|167862454|gb|EDS25837.1| succinyl-CoA ligase beta-chain, mitochondrial [Culex quinquefasciatus]

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/392 (60%), Positives = 286/392 (72%), Gaps = 33/392 (8%)

Query: 32  DARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH 91
           + R   ++LKD N  EYV+KAQILAGGRG GHFDNGFK GVH T +   + P++EKM+G 
Sbjct: 53  EGRKDEDVLKDFNVNEYVVKAQILAGGRGKGHFDNGFKGGVHITKDRSKVIPLVEKMVGA 112

Query: 92  KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAK 151
           KLITKQTPK GI V  VMVA S+NI RETY  IV DR HNGPV+I SP+GG DIE VA +
Sbjct: 113 KLITKQTPKDGILVKSVMVADSINIVRETYLSIVMDREHNGPVLIASPAGGMDIEAVAEE 172

Query: 152 TPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADF 211
           TP  +KT+PI +  GI+ + A+D+A FLEF+G L   AATE++KL++LF     QK    
Sbjct: 173 TPEKIKTVPISILAGISRAQAEDVARFLEFKGPLVQTAATEIEKLYSLF-----QK---- 223

Query: 212 LEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQ 271
                                   VD TQ+EINPL ETD+  VISVDAK+NFDDNAEFRQ
Sbjct: 224 ------------------------VDCTQIEINPLAETDDGRVISVDAKLNFDDNAEFRQ 259

Query: 272 KNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANF 331
           K+IF+     ++DP+E++ASKYNLNY+ M+GNIGCLVNGAGLAMATMDIIKL+GG PANF
Sbjct: 260 KDIFAMEVHEDTDPKEIEASKYNLNYIAMEGNIGCLVNGAGLAMATMDIIKLNGGAPANF 319

Query: 332 LDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLV 391
           LDVGG V E+ +++AF+I++SD NVK ILVNVFGGIVNCATIA G+VNA K   L +PLV
Sbjct: 320 LDVGGNVKEDQVLKAFQILTSDQNVKAILVNVFGGIVNCATIANGIVNATKVIGLRVPLV 379

Query: 392 VRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           VRLEGTNV   K+IL ES L +  A DLDEAA
Sbjct: 380 VRLEGTNVNAAKKILQESGLKIESAQDLDEAA 411

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193713938|ref|XP_001946802.1| PREDICTED: succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial-like [Acyrthosiphon pisum]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/394 (59%), Positives = 292/394 (74%), Gaps = 33/394 (8%)

Query: 30  LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMI 89
           +E+A    N+LK  +  EYV+KAQ+LAGGRG GHF+NGFK GVH T     I  +L+ M+
Sbjct: 55  VENADETNNLLKSFDVDEYVLKAQVLAGGRGKGHFNNGFKGGVHVTKERTKIYDLLKNML 114

Query: 90  GHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVA 149
           G+KLITKQTPK GI V KVMVA+SV+I RETYFCI+ DR  NGPV+I SP+GG DIE++A
Sbjct: 115 GYKLITKQTPKDGILVTKVMVAESVDIKRETYFCILMDRSQNGPVLIASPAGGMDIEDIA 174

Query: 150 AKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIA 209
             +P L+K IPID+ +GI++++A D+A FL F   L + AA E+++LW            
Sbjct: 175 INSPELIKKIPIDIFEGISDTVALDVAKFLNFNEPLASVAANEIKRLW------------ 222

Query: 210 DFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEF 269
              EF                  FLSVDA Q+EINPLVET + +V+ VDAKI FDDN++F
Sbjct: 223 ---EF------------------FLSVDAVQIEINPLVETLDNKVVCVDAKIQFDDNSQF 261

Query: 270 RQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPA 329
           R K IF  +E SESDPREV A+K+NL+Y+GMDGNIGCLVNGAGLAMATMDIIKL GGEPA
Sbjct: 262 RHKEIFELDETSESDPREVMANKHNLSYIGMDGNIGCLVNGAGLAMATMDIIKLRGGEPA 321

Query: 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIP 389
           NFLDVGG VNE  + +AF++++ DS+VK ILVNVFGGIVNCATIAKGL+NA +   L +P
Sbjct: 322 NFLDVGGNVNENQVYEAFKLLTLDSSVKAILVNVFGGIVNCATIAKGLINASRKLDLQVP 381

Query: 390 LVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           LVVRLEGTNV  GK++L+ES LP+ FASDLDEAA
Sbjct: 382 LVVRLEGTNVSAGKKLLEESGLPIEFASDLDEAA 415

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|321476532|gb|EFX87492.1| hypothetical protein DAPPUDRAFT_306482 [Daphnia pulex]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/400 (58%), Positives = 290/400 (72%), Gaps = 33/400 (8%)

Query: 24  STDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPP 83
           +  K  + D    TN L  LN  EYV+KAQILAGGRGLG FD+GFK GVH T +      
Sbjct: 47  TVQKFIVADKIEDTNSLSKLNPGEYVVKAQILAGGRGLGVFDSGFKGGVHLTKDPVKAKS 106

Query: 84  ILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGT 143
           ++ +M+  +LITKQTPK GI VN VMVA+SV+I RETY CI+ DR +NGPV+I SP+GG 
Sbjct: 107 LVGEMLNKRLITKQTPKDGIPVNHVMVAESVDILRETYLCILMDREYNGPVIIASPAGGM 166

Query: 144 DIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSS 203
           DIE+VA KTP L+KT+P+D+ +G+T+ +A D+A+F                         
Sbjct: 167 DIEDVAHKTPELIKTLPVDIFEGVTDQMANDLAEF------------------------- 201

Query: 204 LAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINF 263
                   L F+GDLK KAA E++ LW +FL VDA Q+EINP VET + +V+SVDAKI F
Sbjct: 202 --------LLFKGDLKKKAAQEIKNLWEMFLKVDAVQVEINPFVETPQGQVVSVDAKIGF 253

Query: 264 DDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKL 323
           DDNA+FRQ+ IF   + +E DPREV+A+KYNLNY+GMDGNIGCLVNGAGLAMATMDII+L
Sbjct: 254 DDNAKFRQQEIFDMEDTTECDPREVEANKYNLNYIGMDGNIGCLVNGAGLAMATMDIIQL 313

Query: 324 HGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKS 383
           +G  PANFLDVGG V E+ ++QAF+I++SD NVK ILVNVFGGIVNCATIA G+V ACK 
Sbjct: 314 YGASPANFLDVGGTVQEQQVLQAFQILTSDKNVKAILVNVFGGIVNCATIASGIVGACKR 373

Query: 384 FKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
            +L +PL+VRLEGTNV   K+IL +S LP+  ASDLD+AA
Sbjct: 374 IELKVPLIVRLEGTNVDAAKQILKDSGLPIQSASDLDDAA 413

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126843|ref|XP_002007878.1| GI13181 [Drosophila mojavensis] gi|193919487|gb|EDW18354.1| GI13181 [Drosophila mojavensis]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/395 (61%), Positives = 288/395 (72%), Gaps = 34/395 (8%)

Query: 30  LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMI 89
           L+++ T T ++   +  EYV+KAQILAGGRG G FDNGFK GVH T+N  D+  + +KMI
Sbjct: 52  LDNSSTDTQVVNSFDCPEYVVKAQILAGGRGKGIFDNGFKGGVHITSNKNDVLALSKKMI 111

Query: 90  GHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVA 149
           G++LITKQTPKTGI VNKVMVA+SVNITRETY CI+ DR HNGPV+I SP+GG DIE VA
Sbjct: 112 GNRLITKQTPKTGILVNKVMVARSVNITRETYVCILLDREHNGPVLIASPAGGMDIEAVA 171

Query: 150 AKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIA 209
            +TP  + T+P+D+ + I E     +A FLEF+GD   + A E+QKL             
Sbjct: 172 EETPEKLLTVPLDIDKPIPEDKLIQVAKFLEFKGDAIKRCADEIQKL------------- 218

Query: 210 DFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEF 269
                               + LF SVDA Q+EINPL ETD  EVISVDAK+NFDDNA+F
Sbjct: 219 --------------------YTLFKSVDAVQIEINPLAETDTGEVISVDAKLNFDDNAQF 258

Query: 270 RQKNIFSQNEV-SESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEP 328
           RQK IF+ +    ESDPREV+ASKYNLNYV MDGNIGCLVNGAGLAMATMDIIKL+GGEP
Sbjct: 259 RQKEIFAMDVTEEESDPREVEASKYNLNYVAMDGNIGCLVNGAGLAMATMDIIKLNGGEP 318

Query: 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSI 388
           ANFLDVGGGVNE+ + +AF I++SD  VK ILVNVFGGIVNCATIA G+V A K  KL++
Sbjct: 319 ANFLDVGGGVNEQQVAKAFEILTSDPKVKGILVNVFGGIVNCATIANGIVAASKKLKLNV 378

Query: 389 PLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           PLVVRLEGTNV + + IL  S LP+  ASDLD+AA
Sbjct: 379 PLVVRLEGTNVNQAREILKNSGLPIQTASDLDDAA 413

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377210|ref|XP_002047385.1| GJ11957 [Drosophila virilis] gi|194154543|gb|EDW69727.1| GJ11957 [Drosophila virilis]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/395 (60%), Positives = 293/395 (74%), Gaps = 34/395 (8%)

Query: 30  LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMI 89
           L++++  T  ++  +  EYV+KAQILAGGRG G FDNGFK GVH T+N  D+  + ++MI
Sbjct: 47  LDNSKDDTQAVQSFDCDEYVVKAQILAGGRGKGIFDNGFKGGVHITSNKSDVLSLSKQMI 106

Query: 90  GHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVA 149
           G++LITKQTPK+GI VNKVMVA+SVNITRETY CI+ DR HNGPV+I SP+GG DIE VA
Sbjct: 107 GNRLITKQTPKSGILVNKVMVARSVNITRETYLCILLDREHNGPVLIASPAGGMDIEAVA 166

Query: 150 AKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIA 209
           A+TP  +KT+P+ +++ I E++  ++A FLEF+GD   + A E+QK              
Sbjct: 167 AETPEKIKTVPLSINKPIPEAVLLEVAKFLEFKGDTVQRCADEIQK-------------- 212

Query: 210 DFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEF 269
                              L+ LF +VDA Q+EINPL ETD  EVISVDAK+NFDDNAEF
Sbjct: 213 -------------------LYTLFKAVDAVQIEINPLAETDNGEVISVDAKLNFDDNAEF 253

Query: 270 RQKNIFSQNEVSE-SDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEP 328
           RQK+IF+ +   E +DPREV+ASKYNLNYV MDGNIGCLVNGAGLAMATMDIIKL+GGEP
Sbjct: 254 RQKDIFALDTHEEDADPREVEASKYNLNYVAMDGNIGCLVNGAGLAMATMDIIKLNGGEP 313

Query: 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSI 388
           ANFLDVGGGV E+ + +AF I++SD  VK ILVNVFGGIVNCATIA G+V A K  KL++
Sbjct: 314 ANFLDVGGGVQEDQVAKAFEILTSDPKVKGILVNVFGGIVNCATIANGIVAASKKLKLNV 373

Query: 389 PLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           PLVVRLEGTNV + + IL  S LP+  ASDLD+AA
Sbjct: 374 PLVVRLEGTNVTKAREILKNSGLPIQTASDLDDAA 408

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491992|ref|XP_002093802.1| GE20552 [Drosophila yakuba] gi|194179903|gb|EDW93514.1| GE20552 [Drosophila yakuba]

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/395 (59%), Positives = 291/395 (73%), Gaps = 34/395 (8%)

Query: 30  LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMI 89
           L++++    ++K     EYV+KAQILAGGRG G FDNGFK GVH T+N  ++  + ++MI
Sbjct: 47  LDNSKADAEVVKTFECPEYVVKAQILAGGRGKGTFDNGFKGGVHITSNKSEVLSLTQQMI 106

Query: 90  GHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVA 149
           G++LITKQTPK+GI VNKVMVA+S+NITRETY CI+ DR HNGPV+I SP+GG DIE VA
Sbjct: 107 GNRLITKQTPKSGILVNKVMVARSINITRETYLCILLDREHNGPVLIASPAGGMDIEAVA 166

Query: 150 AKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIA 209
            +TP  +KT+P+D+ + I ES   ++A FLEF+GD   + A E+QKL             
Sbjct: 167 EETPEKIKTVPLDIDKPIPESTLLEVAKFLEFKGDSVKRCAEEIQKL------------- 213

Query: 210 DFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEF 269
                               + LF SVDA Q+EINPL ETD+ EVISVDAK+NFDDNA+F
Sbjct: 214 --------------------YTLFKSVDAVQIEINPLAETDKGEVISVDAKLNFDDNAQF 253

Query: 270 RQKNIFSQNEV-SESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEP 328
           RQK+IFS +    ESDPREV+A+KYNLNYV MDGNIGCLVNGAGLAMATMDIIKL+GGEP
Sbjct: 254 RQKDIFSMDVTEEESDPREVEAAKYNLNYVAMDGNIGCLVNGAGLAMATMDIIKLNGGEP 313

Query: 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSI 388
           ANFLDVGGGV E+ + +AF I+++D  VK ILVNVFGGIVNCATIA G+V A K  +L++
Sbjct: 314 ANFLDVGGGVKEDQVAKAFEILTADPKVKGILVNVFGGIVNCATIANGIVAASKKLQLNV 373

Query: 389 PLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           PLVVRLEGTNV + + IL  S LP+  ASDLD+AA
Sbjct: 374 PLVVRLEGTNVNQAREILKNSGLPIQTASDLDDAA 408

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374636|gb|EFR22149.1| hypothetical protein AND_15704 [Anopheles darlingi]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/392 (58%), Positives = 286/392 (72%), Gaps = 33/392 (8%)

Query: 32  DARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH 91
           + +   ++LKD N  EYVIKAQILAGGRG GHFDNGFK GVH T +   + P++EKM+GH
Sbjct: 39  EGKQDADVLKDFNVNEYVIKAQILAGGRGKGHFDNGFKGGVHITKDRSQVIPLVEKMVGH 98

Query: 92  KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAK 151
           +LITKQTPK GI V KVMVA S+NI RETY  IV DR HNGPV+I SP+GG DIE VA +
Sbjct: 99  RLITKQTPKDGILVKKVMVADSINIVRETYLSIVMDRQHNGPVLIASPAGGMDIEAVAEE 158

Query: 152 TPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADF 211
           TP  +KT+PID+  GIT   + ++A FLEF+G L  +AA ++ K                
Sbjct: 159 TPDKIKTLPIDITAGITREQSLEVARFLEFRGPLLERAADQIVK---------------- 202

Query: 212 LEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQ 271
                            L++LF  VDA Q+EINPL ETD+  VISVDAK+NF+DNA+FRQ
Sbjct: 203 -----------------LYHLFTKVDAVQIEINPLAETDDGRVISVDAKLNFEDNAQFRQ 245

Query: 272 KNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANF 331
           K+IF+     ++DP+E++ASKYNLNY+ M+GNIGCLVNGAGLAMATMDIIKL+GG PANF
Sbjct: 246 KDIFAMEVHEDTDPKEIEASKYNLNYIAMEGNIGCLVNGAGLAMATMDIIKLNGGSPANF 305

Query: 332 LDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLV 391
           LDVGG V E+ +++AF+I++SD NVK ILVNVFGGIVNCATIA G+V+A KS  L +PL+
Sbjct: 306 LDVGGNVKEDQVLKAFQILTSDENVKAILVNVFGGIVNCATIANGIVSATKSMNLKVPLI 365

Query: 392 VRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           VRLEGTNV   K+IL++S L +  A DLDEAA
Sbjct: 366 VRLEGTNVTAAKKILEQSGLKIQSAVDLDEAA 397

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	525
UNIPROTKB|Q5ZL37	432	SUCLG2 "Uncharacterized protei	0.417	0.506	0.602	3e-112
ZFIN|ZDB-GENE-030114-3	432	suclg2 "succinate-CoA ligase,	0.417	0.506	0.616	4.9e-112
WB|WBGene00016844	415	sucg-1 [Caenorhabditis elegans	0.415	0.525	0.628	4.9e-110
TAIR|locus:2039037	421	AT2G20420 [Arabidopsis thalian	0.417	0.520	0.579	4.7e-97
UNIPROTKB|F1PPC7	405	SUCLA2 "Succinyl-CoA ligase [A	0.422	0.548	0.540	1.3e-92
UNIPROTKB|F1RK10	463	SUCLA2 "Succinyl-CoA ligase [A	0.422	0.479	0.540	4.3e-92
UNIPROTKB|O97580	425	SUCLA2 "Succinyl-CoA ligase [A	0.422	0.522	0.540	5.5e-92
UNIPROTKB|Q5F3B9	463	SUCLA2 "Uncharacterized protei	0.422	0.479	0.545	1.1e-91
UNIPROTKB|F5GXC8	405	SUCLA2 "Succinyl-CoA ligase [A	0.422	0.548	0.536	1.5e-91
UNIPROTKB|Q9P2R7	463	SUCLA2 "Succinyl-CoA ligase [A	0.422	0.479	0.536	1.5e-91

UNIPROTKB|Q5ZL37 SUCLG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 710 (255.0 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
 Identities = 132/219 (60%), Positives = 176/219 (80%)

Query:   205 AQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFD 264
             A ++A  L F+G L+ +AA +++KL+NLFL +DATQ+E+NP  ET E +V+  DAKINFD
Sbjct:   204 ALQMAKNLGFKGPLQQQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFD 263

Query:   265 DNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLH 324
             DNAEFRQK IF+ ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+
Sbjct:   264 DNAEFRQKEIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIISLN 323

Query:   325 GGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384
             GG+PANFLD+GGGV E  + QAF+++++D  V+ ILVN+FGGIVNCA IA G+  AC+  
Sbjct:   324 GGKPANFLDLGGGVKEAQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACREL 383

Query:   385 KLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
             +L +PLVVRLEGTNV E +RIL+ES LP+  ASDL++AA
Sbjct:   384 ELKVPLVVRLEGTNVHEAQRILNESGLPITSASDLEDAA 422

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-030114-3 suclg2 "succinate-CoA ligase, GDP-forming, beta subunit" [Danio rerio (taxid:7955)]

 Score = 724 (259.9 bits), Expect = 4.9e-112, Sum P(2) = 4.9e-112
 Identities = 135/219 (61%), Positives = 175/219 (79%)

Query:   205 AQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFD 264
             A ++A  L F+G L+ +AA ++++L++LFL VDATQ+E+NPL ET E +V+  DAKINFD
Sbjct:   204 ALRMAANLGFKGPLERQAADQIKRLYDLFLKVDATQVEVNPLGETPEGQVVCFDAKINFD 263

Query:   265 DNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLH 324
             DNAEFRQK +FS ++ +ESDP E +A+KY+L Y+GMDGNI C VNGAGLAMAT DII LH
Sbjct:   264 DNAEFRQKAVFSMDDTAESDPIETEAAKYDLKYIGMDGNIACFVNGAGLAMATCDIIDLH 323

Query:   325 GGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384
             GG+PANFLD+GGGV E  +  AF+++++D  V+ ILVN+FGGIVNCA IA G+  AC+  
Sbjct:   324 GGKPANFLDLGGGVKENQVYAAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACREL 383

Query:   385 KLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
             +L +PLVVRLEGTNV E KRIL ES LP+  A+DLD+AA
Sbjct:   384 ELKVPLVVRLEGTNVHEAKRILSESGLPITSATDLDDAA 422

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

WB|WBGene00016844 sucg-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 724 (259.9 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
 Identities = 137/218 (62%), Positives = 175/218 (80%)

Query:   207 KIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDN 266
             KIA  L+F G L   AA E+++L++LF++VDATQ+EINPLVET +  V  VDAK+NFDD+
Sbjct:   190 KIAKDLQFEGKLIGVAAQEIKRLYDLFIAVDATQVEINPLVETADGRVFCVDAKMNFDDS 249

Query:   267 AEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGG 326
             A +RQK IF+     E DPREVDA ++NLNY+GMDGNI CLVNGAGLAMATMD+IKLHGG
Sbjct:   250 AAYRQKEIFAYETFEEHDPREVDAHQFNLNYIGMDGNIACLVNGAGLAMATMDLIKLHGG 309

Query:   327 EPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKL 386
             EPANFLDVGG V E+++  A RII+SD  VKC+L+N+FGGIVNCATIA G+V+A     L
Sbjct:   310 EPANFLDVGGAVTEDAVFNAVRIITSDPRVKCVLINIFGGIVNCATIANGVVSAVNKIGL 369

Query:   387 SIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAAS 424
             ++P+VVRLEGTNV   K+I+ +S L ++ A++LDEAA+
Sbjct:   370 NVPMVVRLEGTNVDAAKQIMKKSGLKILTANNLDEAAA 407

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

TAIR|locus:2039037 AT2G20420 [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
 Identities = 127/219 (57%), Positives = 165/219 (75%)

Query:   205 AQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFD 264
             A K+ D L  +   +  +  +V+KL+ LF   D T LEINPL ET   ++++ DAK+NFD
Sbjct:   194 AAKVVDGLAPKAADRKDSIEQVKKLYELFRKTDCTMLEINPLAETSTNQLVAADAKLNFD 253

Query:   265 DNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLH 324
             DNA FRQK +F+  + ++ DPREV A+K +LNY+G+DG IGC+VNGAGLAMATMDIIKLH
Sbjct:   254 DNAAFRQKEVFAMRDPTQEDPREVAAAKVDLNYIGLDGEIGCMVNGAGLAMATMDIIKLH 313

Query:   325 GGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384
             GG PANFLDVGG  +E  +++AF+I++SD  VK ILVN+FGGI+ C  IA G+VNA K  
Sbjct:   314 GGTPANFLDVGGNASEHQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKEV 373

Query:   385 KLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
              L +P+VVRLEGTNV++GKRIL ES + LI A DLD+AA
Sbjct:   374 ALKVPVVVRLEGTNVEQGKRILKESGMKLITADDLDDAA 412

GO:0003824 "catalytic activity" evidence=IEA

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|F1PPC7 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Canis lupus familiaris (taxid:9615)]

 Score = 629 (226.5 bits), Expect = 1.3e-92, Sum P(2) = 1.3e-92
 Identities = 120/222 (54%), Positives = 160/222 (72%)

Query:   205 AQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFD 264
             A ++A  + F  ++   AA  + KL+NLFL  DAT +EINP+VE  +  V+ +DAKINFD
Sbjct:   161 AVRLAQKMGFPSNIVDSAAENMVKLYNLFLKYDATMVEINPMVEDSDGTVLCMDAKINFD 220

Query:   265 DNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLH 324
              N+ +RQK IF   + ++ D RE  A+K NLNY+G+DGNIGCLVNGAGLAMATMDIIKLH
Sbjct:   221 SNSAYRQKKIFDLQDWTQEDEREKGAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLH 280

Query:   325 GGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384
             GG PANFLDVGGG     + +AF++I+SD  V  ILVN+FGGI+ C  IA+G+V A K  
Sbjct:   281 GGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDL 340

Query:   385 KLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLV 426
             ++ IP+VVRL+GT V + K ++ +S L ++   DLDEAA +V
Sbjct:   341 EIKIPIVVRLQGTRVDDAKALITDSGLKILACDDLDEAAKMV 382

GO:0005739 "mitochondrion" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1RK10 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 627 (225.8 bits), Expect = 4.3e-92, Sum P(2) = 4.3e-92
 Identities = 120/222 (54%), Positives = 160/222 (72%)

Query:   205 AQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFD 264
             A ++A  + F   +   AA  + KL+NLFL  DAT +EINP+VE  +  V+ +DAKINFD
Sbjct:   219 AVRLAQKMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFD 278

Query:   265 DNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLH 324
              N+ +RQK IF   + ++ D R+ DA+K NLNY+G+DGNIGCLVNGAGLAMATMDIIKLH
Sbjct:   279 SNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLH 338

Query:   325 GGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384
             GG PANFLDVGGG     + +AF++I+SD  V  ILVN+FGGI+ C  IA+G+V A K  
Sbjct:   339 GGTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDL 398

Query:   385 KLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLV 426
             ++ IP+VVRL+GT V + K ++ +S L ++   DLDEAA +V
Sbjct:   399 EIKIPIVVRLQGTRVDDAKALIADSGLKILACDDLDEAAKMV 440

GO:0005739 "mitochondrion" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O97580 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 626 (225.4 bits), Expect = 5.5e-92, Sum P(2) = 5.5e-92
 Identities = 120/222 (54%), Positives = 160/222 (72%)

Query:   205 AQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFD 264
             A ++A  + F   +   AA  + KL+NLFL  DAT +EINP+VE  +  V+ +DAKINFD
Sbjct:   181 AVRLAQKMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFD 240

Query:   265 DNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLH 324
              N+ +RQK IF   + ++ D R+ DA+K NLNY+G+DGNIGCLVNGAGLAMATMDIIKLH
Sbjct:   241 SNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLH 300

Query:   325 GGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384
             GG PANFLDVGGG     + +AF++I+SD  V  ILVN+FGGI+ C  IA+G+V A K  
Sbjct:   301 GGTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDL 360

Query:   385 KLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLV 426
             ++ IP+VVRL+GT V + K ++ +S L ++   DLDEAA +V
Sbjct:   361 EIKIPVVVRLQGTRVDDAKALIADSGLKILACDDLDEAAKMV 402

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5F3B9 SUCLA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 623 (224.4 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
 Identities = 121/222 (54%), Positives = 160/222 (72%)

Query:   205 AQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFD 264
             A ++A  + F  +L  +AA  + KL+NLFL  DAT +EINP+VE     V+ +DAKINFD
Sbjct:   219 AVRLAQKMGFPPNLVDEAAENMIKLYNLFLKYDATMIEINPMVEDASGVVMCMDAKINFD 278

Query:   265 DNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLH 324
              N+ +RQK IF   + ++ D R+ DA+K +LNY+G+DGNIGCLVNGAGLAMATMDIIKLH
Sbjct:   279 SNSAYRQKKIFDMQDWTQEDERDRDAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLH 338

Query:   325 GGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384
             GG PANFLDVGGG   + + +AF++I+SD  V  ILVN+FGGI+ C  IA+G+V A K  
Sbjct:   339 GGTPANFLDVGGGATVQQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDL 398

Query:   385 KLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLV 426
              L IP+VVRL+GT V + K ++  S L ++   DLDEAA +V
Sbjct:   399 DLKIPIVVRLQGTRVDDAKALITASGLKILACDDLDEAAKMV 440

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F5GXC8 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 624 (224.7 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
 Identities = 119/222 (53%), Positives = 161/222 (72%)

Query:   205 AQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFD 264
             A ++A  + F  ++   AA  + KL++LFL  DAT +EINP+VE  +  V+ +DAKINFD
Sbjct:   161 ALQLAQKMGFPPNIVESAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFD 220

Query:   265 DNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLH 324
              N+ +RQK IF   + ++ D R+ DA+K NLNY+G+DGNIGCLVNGAGLAMATMDIIKLH
Sbjct:   221 SNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLH 280

Query:   325 GGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384
             GG PANFLDVGGG     + +AF++I+SD  V  ILVN+FGGI+ C  IA+G+V A K  
Sbjct:   281 GGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDL 340

Query:   385 KLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLV 426
             ++ IP+VVRL+GT V + K ++ +S L ++   DLDEAA +V
Sbjct:   341 EIKIPVVVRLQGTRVDDAKALIADSGLKILACDDLDEAARMV 382

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0006104 "succinyl-CoA metabolic process" evidence=IEA

GO:0006105 "succinate metabolic process" evidence=IEA

UNIPROTKB|Q9P2R7 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 624 (224.7 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
 Identities = 119/222 (53%), Positives = 161/222 (72%)

Query:   205 AQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFD 264
             A ++A  + F  ++   AA  + KL++LFL  DAT +EINP+VE  +  V+ +DAKINFD
Sbjct:   219 ALQLAQKMGFPPNIVESAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFD 278

Query:   265 DNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLH 324
              N+ +RQK IF   + ++ D R+ DA+K NLNY+G+DGNIGCLVNGAGLAMATMDIIKLH
Sbjct:   279 SNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLH 338

Query:   325 GGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384
             GG PANFLDVGGG     + +AF++I+SD  V  ILVN+FGGI+ C  IA+G+V A K  
Sbjct:   339 GGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDL 398

Query:   385 KLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLV 426
             ++ IP+VVRL+GT V + K ++ +S L ++   DLDEAA +V
Sbjct:   399 EIKIPVVVRLQGTRVDDAKALIADSGLKILACDDLDEAARMV 440

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006105 "succinate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=TAS

GO:0006781 "succinyl-CoA pathway" evidence=NAS

GO:0006099 "tricarboxylic acid cycle" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006104 "succinyl-CoA metabolic process" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96I99	SUCB2_HUMAN	6, ., 2, ., 1, ., 4	0.5218	0.6780	0.8240	yes	N/A
A7Z4M9	SUCC_BACA2	6, ., 2, ., 1, ., 5	0.4168	0.6685	0.9116	yes	N/A
Q869S7	SUCB2_DICDI	6, ., 2, ., 1, ., 4	0.5158	0.6552	0.8190	yes	N/A
Q3B5J6	SUCC_PELLD	6, ., 2, ., 1, ., 5	0.4386	0.6533	0.8772	yes	N/A
Q3MHX5	SUCB2_BOVIN	6, ., 2, ., 1, ., 4	0.5141	0.6780	0.8240	yes	N/A
Q65JP0	SUCC_BACLD	6, ., 2, ., 1, ., 5	0.4228	0.64	0.8704	yes	N/A
P53589	SUCB2_CAEEL	6, ., 2, ., 1, ., 4	0.5394	0.6571	0.8313	yes	N/A
A1BE51	SUCC_CHLPD	6, ., 2, ., 1, ., 5	0.4181	0.68	0.9107	yes	N/A
Q2G3G8	SUCC_NOVAD	6, ., 2, ., 1, ., 5	0.4375	0.6628	0.8721	yes	N/A
P80886	SUCC_BACSU	6, ., 2, ., 1, ., 5	0.4194	0.6685	0.9116	yes	N/A
P53312	SUCB_YEAST	6, ., 2, ., 1, ., 5	0.4395	0.6723	0.8266	yes	N/A
A7HT39	SUCC_PARL1	6, ., 2, ., 1, ., 5	0.4398	0.6666	0.8997	yes	N/A
Q5GSB6	SUCC_WOLTR	6, ., 2, ., 1, ., 5	0.4402	0.6666	0.9067	yes	N/A
Q28U74	SUCC_JANSC	6, ., 2, ., 1, ., 5	0.4090	0.7161	0.9471	yes	N/A
A1UQV9	SUCC_BARBK	6, ., 2, ., 1, ., 5	0.4348	0.6628	0.8743	yes	N/A
B2UMH5	SUCC_AKKM8	6, ., 2, ., 1, ., 5	0.4625	0.6990	0.9338	yes	N/A
A6UDP2	SUCC_SINMW	6, ., 2, ., 1, ., 5	0.4233	0.6647	0.8768	yes	N/A
Q4L5U8	SUCC_STAHJ	6, ., 2, ., 1, ., 5	0.4238	0.6742	0.9123	yes	N/A
Q8KFE7	SUCC_CHLTE	6, ., 2, ., 1, ., 5	0.4080	0.68	0.9107	yes	N/A
B3EFL3	SUCC_CHLL2	6, ., 2, ., 1, ., 5	0.4206	0.68	0.9107	yes	N/A
A5VB78	SUCC_SPHWW	6, ., 2, ., 1, ., 5	0.4270	0.6628	0.8721	yes	N/A
O82662	SUCB_ARATH	6, ., 2, ., 1, ., 5	0.4921	0.6590	0.8218	yes	N/A
A4SDL6	SUCC_PROVI	6, ., 2, ., 1, ., 5	0.4164	0.6876	0.9232	yes	N/A
Q6K9N6	SUCB_ORYSJ	6, ., 2, ., 1, ., 5	0.4845	0.6704	0.8341	yes	N/A
B4S612	SUCC_PROA2	6, ., 2, ., 1, ., 5	0.4261	0.68	0.9153	yes	N/A
Q21CW8	SUCC_RHOPB	6, ., 2, ., 1, ., 5	0.4176	0.7047	0.9273	yes	N/A
Q73FW3	SUCC_WOLPM	6, ., 2, ., 1, ., 5	0.4379	0.6571	0.9007	yes	N/A
A4YKC6	SUCC_BRASO	6, ., 2, ., 1, ., 5	0.4172	0.6952	0.9170	yes	N/A
C0R4N4	SUCC_WOLWR	6, ., 2, ., 1, ., 5	0.4173	0.6609	0.9060	yes	N/A
Q11CV8	SUCC_MESSB	6, ., 2, ., 1, ., 5	0.4226	0.6685	0.8841	yes	N/A
P53590	SUCB2_PIG	6, ., 2, ., 1, ., 4	0.5191	0.6819	0.8267	yes	N/A
B4RCH3	SUCC_PHEZH	6, ., 2, ., 1, ., 5	0.4278	0.6685	0.8796	yes	N/A
Q9EYG9	SUCC_RHIME	6, ., 2, ., 1, ., 5	0.4311	0.6647	0.8768	yes	N/A
Q4FP29	SUCC_PELUB	6, ., 2, ., 1, ., 5	0.4296	0.6666	0.9067	yes	N/A
Q9Z2I8	SUCB2_MOUSE	6, ., 2, ., 1, ., 4	0.5192	0.6780	0.8221	yes	N/A
O94415	SUCB_SCHPO	6, ., 2, ., 1, ., 4	0.4379	0.6857	0.8314	yes	N/A
B3QWF8	SUCC_CHLT3	6, ., 2, ., 1, ., 5	0.4181	0.68	0.9107	yes	N/A
B9JCF4	SUCC_AGRRK	6, ., 2, ., 1, ., 5	0.4160	0.7123	0.9420	yes	N/A
Q0AKU3	SUCC_MARMM	6, ., 2, ., 1, ., 5	0.4297	0.6361	0.8370	yes	N/A
O97580	SUCB1_PIG	6, ., 2, ., 1, ., 5	0.4680	0.6819	0.8423	yes	N/A
Q1QQR3	SUCC_NITHX	6, ., 2, ., 1, ., 5	0.4097	0.6685	0.8841	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.766
4th Layer	6.2.1.5	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	525
PLN00124	422	PLN00124, PLN00124, succinyl-CoA ligase [GDP-formi	1e-154
PRK00696	388	PRK00696, sucC, succinyl-CoA synthetase subunit be	1e-153
COG0045	387	COG0045, SucC, Succinyl-CoA synthetase, beta subun	1e-132
TIGR01016	386	TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be	1e-126
PRK14046	392	PRK14046, PRK14046, malate--CoA ligase subunit bet	1e-111
pfam08442	202	pfam08442, ATP-grasp_2, ATP-grasp domain	7e-58
pfam00549	128	pfam00549, Ligase_CoA, CoA-ligase	1e-33
PRK00696	388	PRK00696, sucC, succinyl-CoA synthetase subunit be	6e-15
COG0045	387	COG0045, SucC, Succinyl-CoA synthetase, beta subun	5e-13
PLN00124	422	PLN00124, PLN00124, succinyl-CoA ligase [GDP-formi	6e-13
TIGR01016	386	TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be	2e-11
PRK14046	392	PRK14046, PRK14046, malate--CoA ligase subunit bet	3e-11
TIGR02717	447	TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synt	5e-04
pfam00549	128	pfam00549, Ligase_CoA, CoA-ligase	0.002
PLN02235	423	PLN02235, PLN02235, ATP citrate (pro-S)-lyase	0.002

>gnl|CDD|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

 Score =  446 bits (1148), Expect = e-154
 Identities = 189/378 (50%), Positives = 246/378 (65%), Gaps = 34/378 (8%)

Query: 46  KEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINV 105
            E V+K+QILAGGRGLG F NG K GVH     +    +  KM+G  L+TKQT   G  V
Sbjct: 70  GEVVVKSQILAGGRGLGTFKNGLKGGVHIVKKDK-AEELAGKMLGQILVTKQTGPAGKPV 128

Query: 106 NKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQ 165
           NKV + + +++  E YF I+ DR   GP++I    GGT IE++A K P  +  +PID+ +
Sbjct: 129 NKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKIIKVPIDIFK 188

Query: 166 GITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATE 225
           GIT+  A  + D                          LA K+AD        +  A  +
Sbjct: 189 GITDEDAAKVVD-------------------------GLAPKVAD--------RNDAIEQ 215

Query: 226 VQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDP 285
           V+KL+ LF   D T +EINPL ET + ++++ DAK+NFDDNA FRQK IF+  + S+ DP
Sbjct: 216 VKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDDNAAFRQKEIFALRDTSQEDP 275

Query: 286 REVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQ 345
           REV A+K +LNY+G+DG IGC+VNGAGLAMATMDIIKLHGG PANFLDVGG  +E+ +++
Sbjct: 276 REVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNASEQQVVE 335

Query: 346 AFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRI 405
           AF+I++SD  VK ILVN+FGGI+ C  IA G+VNA K   L +PLVVRLEGTNV +GKRI
Sbjct: 336 AFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRI 395

Query: 406 LDESKLPLIFASDLDEAA 423
           L ES + LI A DLD+AA
Sbjct: 396 LKESGMTLITAEDLDDAA 413

Length = 422

>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional

 Score =  442 bits (1140), Expect = e-153
 Identities = 175/398 (43%), Positives = 234/398 (58%), Gaps = 43/398 (10%)

Query: 31  EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG 90
           E+A  A    ++L    +V+KAQ+ AGGRG          GV    + ++     ++++G
Sbjct: 29  EEAVEAA---EELGGGVWVVKAQVHAGGRGKA-------GGVKLAKSPEEAREFAKQILG 78

Query: 91  HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAA 150
             L+T QT   G  VNKV+V +  +I +E Y  IV DR     V + S  GG DIE VA 
Sbjct: 79  MTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMASTEGGMDIEEVAE 138

Query: 151 KTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIAD 210
           +TP  +  + ID   G+             FQ                      A++IA 
Sbjct: 139 ETPEKIHKVAIDPLTGLQP-----------FQ----------------------AREIAF 165

Query: 211 FLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFR 270
            L   G+   + A  +  L+  F+  DA+ +EINPLV T + ++I++DAKINFDDNA FR
Sbjct: 166 KLGLPGEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFR 225

Query: 271 QKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPAN 330
             ++    ++SE DP E +ASKY LNYV +DGNIGC+VNGAGLAMATMDIIKL+GGEPAN
Sbjct: 226 HPDLAELRDLSEEDPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYGGEPAN 285

Query: 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPL 390
           FLDVGGG   E + +AF+II SD NVK ILVN+FGGI  C  IA+G++ A K   +++PL
Sbjct: 286 FLDVGGGATAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPL 345

Query: 391 VVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNA 428
           VVRLEGTNV+ GK+IL ES L +I A  LD+AA     
Sbjct: 346 VVRLEGTNVELGKKILAESGLNIIAADTLDDAAQKAVE 383

Length = 388

>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

 Score =  389 bits (1001), Expect = e-132
 Identities = 176/395 (44%), Positives = 237/395 (60%), Gaps = 48/395 (12%)

Query: 31  EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG 90
           E+A       K+L     V+KAQ+ AGGRG          GV    + ++     E+++G
Sbjct: 29  EEAEE---AAKELGGGPVVVKAQVHAGGRGKA-------GGVKLAKSPEEAKEAAEEILG 78

Query: 91  HKLITKQTPKTGINVNKVMVAKSVNIT-RETYFCIVQDRLHNGPVVIISPSGGTDIENVA 149
                 QT   G  VNKV+V ++V+I  +E Y  IV DR    PV++ S  GG DIE VA
Sbjct: 79  K---NYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVA 135

Query: 150 AKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIA 209
            KTP  +  + +D   G+    A+++A  L  +G+L                    +++A
Sbjct: 136 EKTPEKIVKVSVDPLTGLRPYQARELAFKLGLEGEL-------------------VKQVA 176

Query: 210 DFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVET-DEREVISVDAKINFDDNAE 268
           D +              +KL+ LF+  DAT +EINPLV T D  +V+++DAKI  DDNA 
Sbjct: 177 DII--------------KKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNAL 222

Query: 269 FRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEP 328
           FR  ++    + SE DPRE +AS Y LNYV +DGNIGC+VNGAGLAMATMDI+KL+GG+P
Sbjct: 223 FRHPDLAELRDESEEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYGGKP 282

Query: 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSI 388
           ANFLDVGGG   E + +AF++I SD NVK I VN+FGGI  C  +A+G++ A K   +++
Sbjct: 283 ANFLDVGGGATAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNV 342

Query: 389 PLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           PLVVRLEGTNV+EGKRIL ES L +I A DLDEAA
Sbjct: 343 PLVVRLEGTNVEEGKRILAESGLNIIAADDLDEAA 377

Length = 387

>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit

 Score =  373 bits (959), Expect = e-126
 Identities = 173/409 (42%), Positives = 241/409 (58%), Gaps = 45/409 (11%)

Query: 18  PVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNN 77
           PV   +    V  E+A     I   L     V+KAQ+ AGGRG      G   GV    +
Sbjct: 18  PVPRGYVATSV--EEAEE---IAAKLGAGPVVVKAQVHAGGRG----KAG---GVKVAKS 65

Query: 78  VQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVII 137
            ++     EK++G +L+T QT   G  VNK+++ ++ +I +E Y  IV DR    PV++ 
Sbjct: 66  KEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMA 125

Query: 138 SPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLW 197
           S  GG DIE VA K+P  +    ID   G            L +Q               
Sbjct: 126 STEGGVDIEEVAEKSPEKIIKYAIDPLTG-----------LLPYQ--------------- 159

Query: 198 NLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISV 257
                  A++IA  L   G+L  + A  ++KL+ +FL  DA+ +EINPLV T +  +I++
Sbjct: 160 -------AREIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIAL 212

Query: 258 DAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMAT 317
           DAK+  DDNA FR  ++    + S+ DPREV A ++ LNYV +DGNIGC+VNGAGLAMAT
Sbjct: 213 DAKLTIDDNALFRHPDLEEMRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMAT 272

Query: 318 MDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGL 377
           MDIIKL+GGEPANFLDVGGG + E + +A +++ SD +VK + +N+FGGI  C  +AKGL
Sbjct: 273 MDIIKLYGGEPANFLDVGGGASAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGL 332

Query: 378 VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLV 426
           V A K   +++P+VVRLEGTNV+EGK+IL ES L +IFA+ ++EAA   
Sbjct: 333 VEALKEVGVNVPVVVRLEGTNVEEGKKILAESGLNIIFATSMEEAAEKA 381

This model is designated subfamily because it does not discriminate the ADP-forming enzyme ((EC 6.2.1.5) from the GDP_forming (EC 6.2.1.4) enzyme. The N-terminal half is described by the CoA-ligases model (pfam00549). The C-terminal half is described by the ATP-grasp model (pfam02222). This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G [Energy metabolism, TCA cycle]. Length = 386

>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional

 Score =  335 bits (860), Expect = e-111
 Identities = 163/387 (42%), Positives = 222/387 (57%), Gaps = 41/387 (10%)

Query: 48  YVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNK 107
           +V+KAQI +G RG          G+       ++    E ++G KL+T QT   G  V +
Sbjct: 43  WVVKAQIHSGARGKA-------GGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQR 95

Query: 108 VMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGI 167
           V V  +  I RE Y   V DR      VI S  GG +IE +AAK P  +  + ++   G+
Sbjct: 96  VYVETADPIERELYLGFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPAVGL 155

Query: 168 TESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQ 227
            +           FQ                      A++IA  L       ++A   + 
Sbjct: 156 QQ-----------FQ----------------------AREIAFGLGLDIKQVSRAVKTIM 182

Query: 228 KLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPRE 287
             +  F  +DAT LEINPLV T +  V+++DAK++FDDNA FR+ NI    + S+ DPRE
Sbjct: 183 GCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIAEMRDPSQEDPRE 242

Query: 288 VDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAF 347
             A+++ L+YVG+DG+IGC+VNGAGLAMATMD+IKL GGEPANFLDVGGG + E + +AF
Sbjct: 243 AQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGASPERVAKAF 302

Query: 348 RIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 407
           R++ SD NVK ILVN+F GI  C  +A+G+V A +   + +PLVVRL GTNV+EG++IL 
Sbjct: 303 RLVLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAGTNVEEGRKILA 362

Query: 408 ESKLPLIFASDLDEAA-SLVNACKSFK 433
           ES LP+I A  L EAA   V A K  K
Sbjct: 363 ESGLPIITADTLAEAAEKAVEAWKGAK 389

Length = 392

>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain

 Score =  190 bits (486), Expect = 7e-58
 Identities = 80/217 (36%), Positives = 108/217 (49%), Gaps = 40/217 (18%)

Query: 32  DARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH 91
               A    K L  K +V+KAQ+LAGGRG          GV    + ++     ++M+G 
Sbjct: 26  SPEEAEEAAKKLGGKVWVVKAQVLAGGRGKA-------GGVKLAKSPEEAKEAAKEMLGK 78

Query: 92  KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAK 151
            L+TKQT   G  VNKV+V ++V+I RE Y  IV DR   GPV+I S  GG DIE VAAK
Sbjct: 79  NLVTKQTGPEGKPVNKVLVEEAVDIAREYYLSIVLDRASRGPVLIASTEGGVDIEEVAAK 138

Query: 152 TPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADF 211
            P  +  +PID   G+T   A++IA  L  +G+L  +AA  ++KL+ LF+          
Sbjct: 139 NPEAIHKVPIDPATGLTPYQAREIAFKLGLEGELVKQAADIIKKLYKLFVER-------- 190

Query: 212 LEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVE 248
                                    DAT +EINPLVE
Sbjct: 191 -------------------------DATLVEINPLVE 202

Length = 202

>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase

 Score =  123 bits (312), Expect = 1e-33
 Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 7/127 (5%)

Query: 307 LVNGAGLAMATMDIIKLHGGEPANFLDVGGGV-NEESIIQAFRIISSDSNVKCILVNVFG 365
           LVNG  LAM  MD+IKL GG P NF+D+GG      + I A ++ ++D  VK IL+++  
Sbjct: 1   LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL 60

Query: 366 GIVNCATIAKGLVNACKSFK-LSIPLVVRLEGTNV-----QEGKRILDESKLPLIFASDL 419
           G   C   A GL+ A K  +   +P+V R+ GT       +E  + L ES + +  +++ 
Sbjct: 61  GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGREEQAKALAESGVLIASSNNQ 120

Query: 420 DEAASLV 426
              A+  
Sbjct: 121 ALRAAGA 127

This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilise ATP others use GTP. Length = 128

>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional

 Score = 76.3 bits (189), Expect = 6e-15
 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 468 DEAAS-LVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
           D  A  ++ A K   +++PLVVRLEGTNV+ GK+IL ES L +I A  LD+AA
Sbjct: 326 DVIAEGIIAAVKEVGVTVPLVVRLEGTNVELGKKILAESGLNIIAADTLDDAA 378

Length = 388

>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

 Score = 70.3 bits (173), Expect = 5e-13
 Identities = 33/54 (61%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 468 DEAAS-LVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAAN 520
           DE A  ++ A K   +++PLVVRLEGTNV+EGKRIL ES L +I A DLDEAA 
Sbjct: 325 DEVAEGIIAALKEVGVNVPLVVRLEGTNVEEGKRILAESGLNIIAADDLDEAAE 378

Length = 387

>gnl|CDD|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

 Score = 70.2 bits (172), Expect = 6e-13
 Identities = 32/50 (64%), Positives = 38/50 (76%)

Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
           A+ +VNA K   L +PLVVRLEGTNV +GKRIL ES + LI A DLD+AA
Sbjct: 364 ASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGMTLITAEDLDDAA 413

Length = 422

>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 1/56 (1%)

Query: 466 DLDEAAS-LVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAAN 520
             D  A  LV A K   +++P+VVRLEGTNV+EGK+IL ES L +IFA+ ++EAA 
Sbjct: 324 RCDLVAKGLVEALKEVGVNVPVVVRLEGTNVEEGKKILAESGLNIIFATSMEEAAE 379

This model is designated subfamily because it does not discriminate the ADP-forming enzyme ((EC 6.2.1.5) from the GDP_forming (EC 6.2.1.4) enzyme. The N-terminal half is described by the CoA-ligases model (pfam00549). The C-terminal half is described by the ATP-grasp model (pfam02222). This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G [Energy metabolism, TCA cycle]. Length = 386

>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 27/50 (54%), Positives = 35/50 (70%)

Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
           A  +V A +   + +PLVVRL GTNV+EG++IL ES LP+I A  L EAA
Sbjct: 329 AEGVVQAAREVGIDVPLVVRLAGTNVEEGRKILAESGLPIITADTLAEAA 378

Length = 392

>gnl|CDD|131764 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synthetase (ADP forming), alpha domain

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 24/133 (18%)

Query: 303 NIGCLVNGAGLAMATMDIIKLHGGEPANF---------------------LDVGGGVNEE 341
            +  + N  G  +   D  + +G E A                       +DV G    E
Sbjct: 297 RVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPE 356

Query: 342 SIIQAFRIISSDSNVK-CILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVR-LEGTNV 399
              +A + ++ D NV   ++V     + +   +AKG++   K      P+V   + G +V
Sbjct: 357 RYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKSN-EKPVVAGFMGGKSV 415

Query: 400 QEGKRILDESKLP 412
              KRIL+E+ +P
Sbjct: 416 DPAKRILEENGIP 428

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference , one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. Length = 447

>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 468 DEAASLVNACKSFK-LSIPLVVRLEGTNV-----QEGKRILDESKLPLIFASDLDEAA 519
           D A  L+ A K  +   +P+V R+ GT       +E  + L ES + +  +++    A
Sbjct: 67  DPAGGLLKAIKEARARELPVVARVCGTEADPQGREEQAKALAESGVLIASSNNQALRA 124

This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilise ATP others use GTP. Length = 128

>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 78/317 (24%), Positives = 119/317 (37%), Gaps = 81/317 (25%)

Query: 119 ETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGIT-ESLAQDIAD 177
           E Y  IV DRL  G  +  S  GG +IE    K    VKTI +     +T E  A  IA 
Sbjct: 116 EFYLSIVSDRL--GCSISFSECGGIEIEENWDK----VKTIFLPTEAPLTSEICAPLIAT 169

Query: 178 F-LEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSV 236
             LE +G                       KI +F+              + ++ +F  +
Sbjct: 170 LPLEIRG-----------------------KIEEFI--------------KGVFAVFQDL 192

Query: 237 DATQLEINPLVETDEREVISVDAKINFDDNAEFRQKN-------------IFSQNEVSES 283
           D T LE+NP    D  E   +D +   DD A F+                + S  E    
Sbjct: 193 DFTFLEMNPFTLVDG-EPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSPTESFIH 251

Query: 284 DPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHG--GEPANFLDVGGGVNEE 341
              E  ++      +   G I  +V G G ++   D +   G   E  N+ +  G  NEE
Sbjct: 252 GLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEE 311

Query: 342 SIIQAFRII------SSDSNVKCILVNVFGGIVNCATIA---KGLVNA-------CKSFK 385
            ++Q  R++      + D   + +L+   GGI N   +A    G++ A        K+ +
Sbjct: 312 EVLQYARVVIDCATANPDGRKRALLIG--GGIANFTDVAATFNGIIRALREKESKLKAAR 369

Query: 386 LSIPLVVRLEGTNVQEG 402
           + I   VR  G N Q+G
Sbjct: 370 MHI--FVRRGGPNYQKG 384

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	525
PLN00124	422	succinyl-CoA ligase [GDP-forming] subunit beta; Pr	100.0
COG0045	387	SucC Succinyl-CoA synthetase, beta subunit [Energy	100.0
PRK14046	392	malate--CoA ligase subunit beta; Provisional	100.0
TIGR01016	386	sucCoAbeta succinyl-CoA synthetase, beta subunit.	100.0
PRK00696	388	sucC succinyl-CoA synthetase subunit beta; Provisi	100.0
PLN02235	423	ATP citrate (pro-S)-lyase	100.0
KOG1447|consensus	412		100.0
KOG2799|consensus	434		100.0
PF08442	202	ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650	100.0
PF13549	222	ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.	100.0
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	99.92
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	99.83
PF00549	153	Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e	99.4
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071	194	GARS_A: Phosphoribosylglycinamide synthetase, ATP-	99.08
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	99.08
COG0151	428	PurD Phosphoribosylamine-glycine ligase [Nucleotid	98.92
PRK13789	426	phosphoribosylamine--glycine ligase; Provisional	98.63
PF02222	172	ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T	98.62
PLN02257	434	phosphoribosylamine--glycine ligase	98.57
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	98.55
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	98.53
KOG0237|consensus	788		98.5
PRK13790	379	phosphoribosylamine--glycine ligase; Provisional	98.47
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	98.45
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	98.43
PF02786	211	CPSase_L_D2: Carbamoyl-phosphate synthase L chain,	98.42
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	98.41
PRK05586	447	biotin carboxylase; Validated	98.37
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	98.35
TIGR01369	1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	98.34
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	98.32
PRK05294	1066	carB carbamoyl phosphate synthase large subunit; R	98.32
PLN02735	1102	carbamoyl-phosphate synthase	98.31
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	98.31
PRK08591	451	acetyl-CoA carboxylase biotin carboxylase subunit;	98.3
PLN02948	577	phosphoribosylaminoimidazole carboxylase	98.29
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	98.22
PF13549	222	ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.	98.22
TIGR01369	1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	98.19
PLN02735	1102	carbamoyl-phosphate synthase	98.17
PRK07178	472	pyruvate carboxylase subunit A; Validated	98.17
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	98.15
PRK12833	467	acetyl-CoA carboxylase biotin carboxylase subunit;	98.14
PRK08654	499	pyruvate carboxylase subunit A; Validated	98.14
COG0439	449	AccC Biotin carboxylase [Lipid metabolism]	98.12
COG0458	400	CarB Carbamoylphosphate synthase large subunit (sp	98.09
PRK14569	296	D-alanyl-alanine synthetase A; Provisional	98.07
PF13535	184	ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A	98.02
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.01
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	98.01
TIGR01205	315	D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a	98.01
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	98.0
PRK08462	445	biotin carboxylase; Validated	98.0
KOG1254|consensus	600		97.99
PRK06111	450	acetyl-CoA carboxylase biotin carboxylase subunit;	97.98
PRK05784	486	phosphoribosylamine--glycine ligase; Provisional	97.96
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	97.96
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	97.95
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.94
PRK08463	478	acetyl-CoA carboxylase subunit A; Validated	97.91
PF07478	203	Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In	97.9
PRK14016	727	cyanophycin synthetase; Provisional	97.9
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	97.86
TIGR02068	864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	97.86
PRK05294	1066	carB carbamoyl phosphate synthase large subunit; R	97.83
PLN02522	608	ATP citrate (pro-S)-lyase	97.79
PRK12999	1146	pyruvate carboxylase; Reviewed	97.78
PRK07206	416	hypothetical protein; Provisional	97.73
PRK01966	333	ddl D-alanyl-alanine synthetase A; Reviewed	97.73
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	97.72
PRK14572	347	D-alanyl-alanine synthetase A; Provisional	97.71
PRK10446	300	ribosomal protein S6 modification protein; Provisi	97.69
PRK02186	887	argininosuccinate lyase; Provisional	97.68
PF08443	190	RimK: RimK-like ATP-grasp domain; InterPro: IPR013	97.64
PRK13278	358	purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D	97.62
TIGR01435	737	glu_cys_lig_rel glutamate--cysteine ligase/gamma-g	97.6
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	97.6
TIGR02144	280	LysX_arch Lysine biosynthesis enzyme LysX. The fam	97.6
PRK12767	326	carbamoyl phosphate synthase-like protein; Provisi	97.56
PRK02471	752	bifunctional glutamate--cysteine ligase/glutathion	97.56
PRK14570	364	D-alanyl-alanine synthetase A; Provisional	97.56
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	97.55
PRK06524	493	biotin carboxylase-like protein; Validated	97.55
PRK14568	343	vanB D-alanine--D-lactate ligase; Provisional	97.53
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	97.52
TIGR00768	277	rimK_fam alpha-L-glutamate ligases, RimK family. T	97.52
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	97.5
PRK06091	555	membrane protein FdrA; Validated	97.47
PRK14571	299	D-alanyl-alanine synthetase A; Provisional	97.39
PLN00124	422	succinyl-CoA ligase [GDP-forming] subunit beta; Pr	97.34
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	97.27
COG0045	387	SucC Succinyl-CoA synthetase, beta subunit [Energy	97.22
PRK00696	388	sucC succinyl-CoA synthetase subunit beta; Provisi	97.22
KOG1447|consensus	412		97.12
TIGR03103	547	trio_acet_GNAT GNAT-family acetyltransferase TIGR0	97.07
PRK13277	366	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo	97.05
COG0189	318	RimK Glutathione synthase/Ribosomal protein S6 mod	96.98
COG0151	428	PurD Phosphoribosylamine-glycine ligase [Nucleotid	96.94
TIGR01016	386	sucCoAbeta succinyl-CoA synthetase, beta subunit.	96.89
PRK14046	392	malate--CoA ligase subunit beta; Provisional	96.8
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	96.79
PLN02235	423	ATP citrate (pro-S)-lyase	96.74
KOG0238|consensus	670		96.52
PRK06849	389	hypothetical protein; Provisional	96.48
COG0439	449	AccC Biotin carboxylase [Lipid metabolism]	96.38
PF08442	202	ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650	96.3
PRK07178	472	pyruvate carboxylase subunit A; Validated	96.26
PRK13789	426	phosphoribosylamine--glycine ligase; Provisional	96.23
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	96.23
PRK13790	379	phosphoribosylamine--glycine ligase; Provisional	96.08
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	95.95
PRK08654	499	pyruvate carboxylase subunit A; Validated	95.86
COG3919	415	Predicted ATP-grasp enzyme [General function predi	95.84
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	95.74
KOG0370|consensus	1435		95.74
PRK12833	467	acetyl-CoA carboxylase biotin carboxylase subunit;	95.73
PLN02257	434	phosphoribosylamine--glycine ligase	95.63
PF15632	329	ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa	95.56
KOG1255|consensus	329		95.55
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	95.49
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	95.22
PRK08591	451	acetyl-CoA carboxylase biotin carboxylase subunit;	95.17
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	95.13
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	95.08
COG1759	361	5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu	94.93
PLN02941	328	inositol-tetrakisphosphate 1-kinase	94.58
KOG0368|consensus	2196		94.08
PRK12458	338	glutathione synthetase; Provisional	93.92
PRK05586	447	biotin carboxylase; Validated	93.9
PRK08462	445	biotin carboxylase; Validated	93.85
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071	194	GARS_A: Phosphoribosylglycinamide synthetase, ATP-	93.41
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	93.32
PRK08463	478	acetyl-CoA carboxylase subunit A; Validated	92.88
KOG0369|consensus	1176		92.84
KOG0237|consensus	788		92.8
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	92.3
PF02786	211	CPSase_L_D2: Carbamoyl-phosphate synthase L chain,	92.25
PF02601	319	Exonuc_VII_L: Exonuclease VII, large subunit; Inte	91.91
PRK14016	727	cyanophycin synthetase; Provisional	91.59
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	91.5
PRK06849	389	hypothetical protein; Provisional	91.46
KOG0238|consensus	670		91.16
PRK12999	1146	pyruvate carboxylase; Reviewed	91.15
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	91.1
PRK06111	450	acetyl-CoA carboxylase biotin carboxylase subunit;	91.05
PRK06091	555	membrane protein FdrA; Validated	90.93
TIGR02144	280	LysX_arch Lysine biosynthesis enzyme LysX. The fam	90.92
PRK06524	493	biotin carboxylase-like protein; Validated	90.89
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	90.87
COG1181	317	DdlA D-alanine-D-alanine ligase and related ATP-gr	90.75
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	90.64
PRK05784	486	phosphoribosylamine--glycine ligase; Provisional	90.38
TIGR02068	864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	90.25
TIGR01380	312	glut_syn glutathione synthetase, prokaryotic. This	89.57
TIGR00768	277	rimK_fam alpha-L-glutamate ligases, RimK family. T	88.91
PRK01966	333	ddl D-alanyl-alanine synthetase A; Reviewed	88.44
PLN02948	577	phosphoribosylaminoimidazole carboxylase	88.41
KOG0370|consensus	1435		88.32
PRK05246	316	glutathione synthetase; Provisional	88.25
PRK14572	347	D-alanyl-alanine synthetase A; Provisional	88.16
TIGR02291	317	rimK_rel_E_lig alpha-L-glutamate ligase-related pr	87.81
PRK02471	752	bifunctional glutamate--cysteine ligase/glutathion	87.6
PRK14569	296	D-alanyl-alanine synthetase A; Provisional	87.2
KOG2799|consensus	434		87.1
COG0189	318	RimK Glutathione synthase/Ribosomal protein S6 mod	86.99
PF02222	172	ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T	86.96
PRK10446	300	ribosomal protein S6 modification protein; Provisi	86.59
PF00549	153	Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e	86.48
TIGR01435	737	glu_cys_lig_rel glutamate--cysteine ligase/gamma-g	86.06
PF11823	73	DUF3343: Protein of unknown function (DUF3343); In	85.83
PRK14570	364	D-alanyl-alanine synthetase A; Provisional	85.66
COG0458	400	CarB Carbamoylphosphate synthase large subunit (sp	84.35
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	84.35
PRK12419	158	riboflavin synthase subunit beta; Provisional	82.26
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	81.49
PRK14568	343	vanB D-alanine--D-lactate ligase; Provisional	81.19
PF02955	173	GSH-S_ATP: Prokaryotic glutathione synthetase, ATP	80.82
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	80.62
TIGR01205	315	D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a	80.03

>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

Probab=100.00  E-value=2.2e-74  Score=607.12  Aligned_cols=390  Identities=48%  Similarity=0.784  Sum_probs=366.1

Q ss_pred             hhccccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcC--CCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccH
Q psy7785           7 QQIANFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLN--FKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDI   81 (525)
Q Consensus         7 ~~~~~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg--~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea   81 (525)
                      +.-.+.||++|+   +||||+|++.++++++||.+++++++  .+|||+|+|++.|||||+||||+++|||+++.+ +++
T Consensus        26 ~~m~l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea  104 (422)
T PLN00124         26 RRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKA  104 (422)
T ss_pred             cccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHH
Confidence            334678899999   89999999999999999999999994  249999999999999999999988999999977 999


Q ss_pred             HHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEec
Q psy7785          82 PPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPI  161 (525)
Q Consensus        82 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l  161 (525)
                      .+++++|+++.+.++++++.|..+++|+|+|++.+++|+|+|+++||...||+|+++..||++||.+++.+||.+.++++
T Consensus       105 ~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~pd~i~~~~i  184 (422)
T PLN00124        105 EELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKIIKVPI  184 (422)
T ss_pred             HHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhCchheeEEec
Confidence            99999999998778888788889999999988888999999999999544999976669999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCcee
Q psy7785         162 DVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQL  241 (525)
Q Consensus       162 ~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~l  241 (525)
                      +|..++++.++++|+.+|++                                 ++.+.+++.+++.+||++|.+++++++
T Consensus       185 d~~~~l~~~~a~~~~~~L~~---------------------------------~~~~~~~l~~ii~~L~~lf~~~d~~~l  231 (422)
T PLN00124        185 DIFKGITDEDAAKVVDGLAP---------------------------------KVADRNDAIEQVKKLYKLFCKCDCTMV  231 (422)
T ss_pred             CcCCCCCHHHHHHHHHHcCC---------------------------------CHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            99999999999999998875                                 456899999999999999999999999


Q ss_pred             eeeceeEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHH
Q psy7785         242 EINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDII  321 (525)
Q Consensus       242 eiNPl~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~  321 (525)
                      |||||+++++|+++|+|||+.+||+|.|||++++..++.++.++.|..+..++++|++++|+||+|+||+|++|.++|++
T Consensus       232 EINPL~vt~~G~~valDAKi~~DdnA~~R~~~~~~~~~~~~~~~~E~~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i  311 (422)
T PLN00124        232 EINPLAETADGQLVAADAKLNFDDNAAFRQKEIFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII  311 (422)
T ss_pred             EeeceEEccCCCEEEEEEEECcCCchhhcChhhhhccCcccCChhHHHHhhCCCceECCCCcEEEEecCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHH
Q psy7785         322 KLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQE  401 (525)
Q Consensus       322 ~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~  401 (525)
                      ..+|++|+||+|++|.++.++++++++++++||++++||||+++|+++|+.+|++|+++++++..++|+|+++.|++.++
T Consensus       312 ~~~Gg~pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn~~~  391 (422)
T PLN00124        312 KLHGGSPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQ  391 (422)
T ss_pred             HHcCCCcceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998778899999999999999


Q ss_pred             HHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785         402 GKRILDESKLPLIFASDLDEAASLVNACK  430 (525)
Q Consensus       402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~  430 (525)
                      ++++|++.|+++..++++++|++.+.++.
T Consensus       392 g~~~l~~~~~~~~~~~~l~~A~~~~v~~~  420 (422)
T PLN00124        392 GKRILKESGMTLITAEDLDDAAEKAVKAL  420 (422)
T ss_pred             HHHHHHhCCCCeEEcCCHHHHHHHHHHHh
Confidence            99999999988666799999999987653

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=100.00  E-value=4.7e-74  Score=581.46  Aligned_cols=377  Identities=46%  Similarity=0.719  Sum_probs=357.3

Q ss_pred             ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785          11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK   87 (525)
Q Consensus        11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~   87 (525)
                      +.||++|+   +||||+|++.++++++|+.++++++|.+|+|+|+|+..|||||       +|||+++.|++|+.+++++
T Consensus         3 lhEYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGK-------aGGVk~~~s~~ea~~~a~~   75 (387)
T COG0045           3 LHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGK-------AGGVKLAKSPEEAKEAAEE   75 (387)
T ss_pred             HHHHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccc-------cCceEEeCCHHHHHHHHHH
Confidence            57899999   9999999999999999999999999866999999999999999       8999999999999999999


Q ss_pred             HhccccccccCCCCCcccCeEEEEeeeCC-ceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCC
Q psy7785          88 MIGHKLITKQTPKTGINVNKVMVAKSVNI-TRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQG  166 (525)
Q Consensus        88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~-~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~  166 (525)
                      |+++.   +|+.+.|..++.+|||+++++ .+|+|+++..||..+.|++|.|..||++||.+++++|+++.+++++|..|
T Consensus        76 ~lg~~---~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~idp~~g  152 (387)
T COG0045          76 ILGKN---YQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTG  152 (387)
T ss_pred             HhCcc---cccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeCCccC
Confidence            99976   478889999999999999994 45999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeece
Q psy7785         167 ITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPL  246 (525)
Q Consensus       167 l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl  246 (525)
                      ++++++|+++..+++++                                 ....++.+++.+||++|.++|++++|||||
T Consensus       153 ~~~~~aR~la~~lgl~~---------------------------------~~~~~~~~ii~~Ly~~f~~~Da~lvEINPL  199 (387)
T COG0045         153 LRPYQARELAFKLGLEG---------------------------------ELVKQVADIIKKLYKLFVEKDATLVEINPL  199 (387)
T ss_pred             CCHHHHHHHHHHcCCCH---------------------------------HHHHHHHHHHHHHHHHHHHcCCcEEEeecc
Confidence            99999999999998743                                 367889999999999999999999999999


Q ss_pred             eEecCC-cEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcC
Q psy7785         247 VETDER-EVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHG  325 (525)
Q Consensus       247 ~v~~~g-~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~G  325 (525)
                      ++|++| .++|+|+|+.+|+||+|||+.+..++|.+++++.|..+..+.++|+.+.|+||||.||+|++|.++|.+..+|
T Consensus       200 vvt~~~g~v~aLDaKi~~DdnAlfRHp~~~~~~d~~~ed~~e~~a~~~~l~yV~LdG~IG~ivNGAGLaMaTmDii~~~G  279 (387)
T COG0045         200 VVTPDGGDVLALDAKITLDDNALFRHPDLAELRDESEEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYG  279 (387)
T ss_pred             EEeCCCCcEEEEeeeeeccCcccccCcchhhhhcccccChhHHHhhhCCCceEEecCcEEEEecChhHHHHHHHHHHHcC
Confidence            999955 8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHH
Q psy7785         326 GEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRI  405 (525)
Q Consensus       326 l~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~  405 (525)
                      ++|+||+|++|+++.+.+.++++++++||+|++||||+|+|++.|+.+|++|+++.++.+.++|+|+++.|++.++++++
T Consensus       280 g~PANFLDvGGgA~~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi~Al~e~~~~vPlVVRL~GtN~e~Gk~i  359 (387)
T COG0045         280 GKPANFLDVGGGATAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVVRLEGTNVEEGKRI  359 (387)
T ss_pred             CCCcceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999997778999999999999999999


Q ss_pred             HhhCCCCccccCCHHHHHHHHHHhh
Q psy7785         406 LDESKLPLIFASDLDEAASLVNACK  430 (525)
Q Consensus       406 L~~~Gvpvf~~~s~~~Av~Al~~l~  430 (525)
                      |.++|+++...+++.+|+..+.+++
T Consensus       360 L~esg~~i~~~~~l~~aa~k~v~~~  384 (387)
T COG0045         360 LAESGLNIIAADDLDEAAEKAVELA  384 (387)
T ss_pred             HHHcCCceEecccHHHHHHHHHHHh
Confidence            9999954433499999999887664

>PRK14046 malate--CoA ligase subunit beta; Provisional

Probab=100.00  E-value=2e-71  Score=584.11  Aligned_cols=380  Identities=42%  Similarity=0.653  Sum_probs=355.0

Q ss_pred             ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785          11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK   87 (525)
Q Consensus        11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~   87 (525)
                      +.||++|+   +||||||++.+++|++|+.++++++|++|||||+|+..+||||       +|||+++.|++++++++++
T Consensus         3 l~E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk-------~GGV~l~~~~~e~~~a~~~   75 (392)
T PRK14046          3 IHEYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGK-------AGGIKLCRTYNEVRDAAED   75 (392)
T ss_pred             CcHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCc-------CCeEEEECCHHHHHHHHHH
Confidence            56899999   9999999999999999999999999986679999998888888       8999999999999999999


Q ss_pred             HhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec-CCCCcccccccccCCCeEEEEecCCCCC
Q psy7785          88 MIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS-PSGGTDIENVAAKTPHLVKTIPIDVHQG  166 (525)
Q Consensus        88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g-~~GGv~iE~~~~~~~~~~~~~~l~p~~~  166 (525)
                      |+++.+.+++++|.|..+++|+||+|+++++|+|+|+++||.| ||+|++| ..||++||.+..++|+.+.+++++|..+
T Consensus        76 ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~-g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~~~~~  154 (392)
T PRK14046         76 LLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKS-ERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPAVG  154 (392)
T ss_pred             HhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCC-CcEEEEEeCCCCCchHHHhhhChhheEEEEcCCCCC
Confidence            9998776778888898999999999999999999999999999 7777774 5899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeece
Q psy7785         167 ITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPL  246 (525)
Q Consensus       167 l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl  246 (525)
                      ++++.+++++.+++++                                 ....+.+.+++.+||++|.++|++++|||||
T Consensus       155 ~~~~~~~~~~~~lg~~---------------------------------~~~~~~~~~~~~~l~~~f~~~d~~l~EINPl  201 (392)
T PRK14046        155 LQQFQAREIAFGLGLD---------------------------------IKQVSRAVKTIMGCYRAFRDLDATMLEINPL  201 (392)
T ss_pred             CCHHHHHHHHHHcCCC---------------------------------HHHHHHHHHHHHHHHHHHHhcCcEEEEEEcc
Confidence            9999999999998863                                 3367889999999999999999999999999


Q ss_pred             eEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCC
Q psy7785         247 VETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGG  326 (525)
Q Consensus       247 ~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl  326 (525)
                      +++.+|+++|+|+|+.+||||.|||+.++.+++.++.+++|..+..++++|++++|+||||+||+|++|+++|++..+|+
T Consensus       202 ~~~~~g~~~alD~k~~~Ddna~~r~~~~~~~~~~~~~~~~e~~a~~~~l~yv~l~G~ig~i~nGaGl~m~t~D~i~~~gg  281 (392)
T PRK14046        202 VVTKDDRVLALDAKMSFDDNALFRRPNIAEMRDPSQEDPREAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGG  281 (392)
T ss_pred             eEcCCCcEEEEeeeECccCCchhcChhHHhhcCcccCChhHHHHHHcCCceEccCCcEEEEeCCccHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHH
Q psy7785         327 EPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRIL  406 (525)
Q Consensus       327 ~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L  406 (525)
                      +++||+|++|.++++.|.++++++++||+||++++++++++..|+.++++|+++.++...+||+++++.|++.++++++|
T Consensus       282 ~paNPlDlgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l~G~~~e~~~~iL  361 (392)
T PRK14046        282 EPANFLDVGGGASPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAGTNVEEGRKIL  361 (392)
T ss_pred             CCcCCEEecCCCCHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999988778889999999999887644689999999887778889999


Q ss_pred             hhCCCCccccCCHHHHHHHHHHhhc
Q psy7785         407 DESKLPLIFASDLDEAASLVNACKS  431 (525)
Q Consensus       407 ~~~Gvpvf~~~s~~~Av~Al~~l~~  431 (525)
                      +++|+|+|..+++++|++.+.++.+
T Consensus       362 ~~~Gipvf~~~~~~~a~~~~v~~~~  386 (392)
T PRK14046        362 AESGLPIITADTLAEAAEKAVEAWK  386 (392)
T ss_pred             HHcCCCeeecCCHHHHHHHHHHHHh
Confidence            9999999999999999999987653

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit

Probab=100.00  E-value=1.5e-68  Score=564.33  Aligned_cols=376  Identities=44%  Similarity=0.703  Sum_probs=347.5

Q ss_pred             ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcC-CCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHH
Q psy7785          11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLN-FKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILE   86 (525)
Q Consensus        11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg-~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~   86 (525)
                      +.||++|+   +||||||++.++++++|+.++++++| | |||||+++..+||||       .|||+++.|++++.++++
T Consensus         3 L~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig~~-PvVvK~~~~~ggkg~-------~GGV~~~~~~~e~~~a~~   74 (386)
T TIGR01016         3 LHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAG-PVVVKAQVHAGGRGK-------AGGVKVAKSKEEARAAAE   74 (386)
T ss_pred             CcHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCC-cEEEEecccCCCCcc-------CceEEEeCCHHHHHHHHH
Confidence            56899998   89999999999999999999999999 7 999999987777777       899999999999999999


Q ss_pred             HHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC-CCccEEEecCCCCcccccccccCCCeEEEEecCCCC
Q psy7785          87 KMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL-HNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQ  165 (525)
Q Consensus        87 ~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~-f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~  165 (525)
                      +++++.+.+++++++|..+++|+||+|+++++|+|+|+++|+. | ||+|+||..||++||.+++++|+.+.++.++|..
T Consensus        75 ~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~-~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~  153 (386)
T TIGR01016        75 KLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSAR-CPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLT  153 (386)
T ss_pred             HHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCC-ceEEEEECCCCccHHHHhhhCccceEEEEcCCCc
Confidence            9998666555444457778999999999999999999999998 7 9999999999999999999999999999999988


Q ss_pred             CCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeec
Q psy7785         166 GITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINP  245 (525)
Q Consensus       166 ~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNP  245 (525)
                      +++.++++.++..+++                                 |+.+.+++.+++.+||++|.+++++++||||
T Consensus       154 ~~~~~~a~~~~~~l~~---------------------------------~~~~~~~l~~~l~~l~~~~~~~~~~~lEINP  200 (386)
T TIGR01016       154 GLLPYQAREIAKKLGL---------------------------------EGELVKQVADIIKKLYQIFLEYDASLVEINP  200 (386)
T ss_pred             CCCHHHHHHHHHHcCC---------------------------------CHHHHHHHHHHHHHHHHHHHhCCceEEEeee
Confidence            9999999999887664                                 6679999999999999999999999999999


Q ss_pred             eeEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcC
Q psy7785         246 LVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHG  325 (525)
Q Consensus       246 l~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~G  325 (525)
                      |+++++|+++|+|+|+.+||+|.|||+.+..+++.++.++.|..+.+++++|++++||||||+||||++|+++|++..+|
T Consensus       201 l~v~~~g~~~a~Daki~~dd~a~~r~~~~~~~~~~~~~~~~e~~~~~~~l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~~g  280 (386)
T TIGR01016       201 LVITKDGNLIALDAKLTIDDNALFRHPDLEEMRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYG  280 (386)
T ss_pred             eEEcCCCCEEEEeeeEeeccchhhhcHHHHHhhcCCcCChhhhHHHHcCCcEEccCCcEEEEECCccHHHHHHHHHHHcC
Confidence            99999988999999999999999999999988888888999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHH
Q psy7785         326 GEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRI  405 (525)
Q Consensus       326 l~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~  405 (525)
                      ++++||+|++|.++++.|.++++++++||++|+++++++++...|+.++++|+++.+++..+||+++++.|++.++++++
T Consensus       281 ~~~aNplDlgg~a~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~~g~~~~~~~~~  360 (386)
T TIGR01016       281 GEPANFLDVGGGASAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLEGTNVEEGKKI  360 (386)
T ss_pred             CCCCCcEEecCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHH
Confidence            99999999999999999999999999999999999988888888999999999998874345999999988777888899


Q ss_pred             HhhCC--CCccccCCHHHHHHHHHHhh
Q psy7785         406 LDESK--LPLIFASDLDEAASLVNACK  430 (525)
Q Consensus       406 L~~~G--vpvf~~~s~~~Av~Al~~l~  430 (525)
                      |+++|  ||+|  ++|++|++++.++.
T Consensus       361 L~~~G~~ip~~--~~~~~Av~~~~~~~  385 (386)
T TIGR01016       361 LAESGLNIIFA--TSMEEAAEKAVEAA  385 (386)
T ss_pred             HHHcCCCcccc--CCHHHHHHHHHHhh
Confidence            99999  9999  99999999988653

This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G

>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional

Probab=100.00  E-value=3.1e-68  Score=562.22  Aligned_cols=376  Identities=46%  Similarity=0.704  Sum_probs=342.0

Q ss_pred             ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHH
Q psy7785          11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILE   86 (525)
Q Consensus        11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~   86 (525)
                      +.||++|+   +||||+|++.++++++|+.++++++ || |||+|++...+||+|       +|||+++.|.++++++++
T Consensus         3 l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i~g~-PvVvK~~~~~ggk~~-------~GGV~l~~~~~e~~~a~~   74 (388)
T PRK00696          3 LHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGGG-VWVVKAQVHAGGRGK-------AGGVKLAKSPEEAREFAK   74 (388)
T ss_pred             CCHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHcCCC-cEEEEEeeCCCCCcc-------cccEEEcCCHHHHHHHHH
Confidence            56899998   8999999999999999999999999 87 999999987777766       899999999999999999


Q ss_pred             HHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEE-ecCCCCcccccccccCCCeEEEEecCCCC
Q psy7785          87 KMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVI-ISPSGGTDIENVAAKTPHLVKTIPIDVHQ  165 (525)
Q Consensus        87 ~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~-~g~~GGv~iE~~~~~~~~~~~~~~l~p~~  165 (525)
                      +|+.+.+.++++++.|..+.+|+||+|++++.|+|+|+++||.| ||+|+ +|..||+++|.++|++|+++.++.++|..
T Consensus        75 ~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~f-gpvv~~~s~~GG~~vE~~~d~~~~~~~~~~l~p~~  153 (388)
T PRK00696         75 QILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRAT-RRVVFMASTEGGMDIEEVAEETPEKIHKVAIDPLT  153 (388)
T ss_pred             HhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCC-CceEEEEeCCCCcchhhhcccCcceeEEEEcCCCC
Confidence            99977543444455677789999999999999999999999999 78875 65689999999999999988889999988


Q ss_pred             CCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeec
Q psy7785         166 GITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINP  245 (525)
Q Consensus       166 ~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNP  245 (525)
                      +++..+|++|+.+++.                                 |+.|++++.+++.+||++|.+++++++||||
T Consensus       154 ~~~~~~a~~~~~~~~~---------------------------------~~~~~~~l~~~l~~l~~l~~~~~~~~leiNP  200 (388)
T PRK00696        154 GLQPFQAREIAFKLGL---------------------------------PGEQVKQFAKILMGLYKAFVEKDASLVEINP  200 (388)
T ss_pred             CCCHHHHHHHHHHcCC---------------------------------CHHHHHHHHHHHHHHHHHHHhCCccEEEEec
Confidence            8899999999998764                                 6779999999999999999999999999999


Q ss_pred             eeEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcC
Q psy7785         246 LVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHG  325 (525)
Q Consensus       246 l~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~G  325 (525)
                      |+++++|+++|+|+|+.+|+++.|||+++.++++..+.++.|..+..++++|+++++||+|||||||+|++++|+++.+|
T Consensus       201 l~v~~~g~~~a~Dak~~ld~~a~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~v~l~~~i~ii~ng~G~~~~~~D~l~~~g  280 (388)
T PRK00696        201 LVVTKDGDLIALDAKINFDDNALFRHPDLAELRDLSEEDPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYG  280 (388)
T ss_pred             eEECCCCcEEEEeeEEeecCCccccCHhHHhhcCCCcCChhhhHHHhcCCcEEecCCcEEEEECCchHHHHHHHHHHHcC
Confidence            99999988999999999999999999999999888878899999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHH
Q psy7785         326 GEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRI  405 (525)
Q Consensus       326 l~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~  405 (525)
                      ++++||+|++|..+++.|.++++++++||++|+++++++++...++.++++|+++.++.+.+||+++++.|...++.+++
T Consensus       281 ~~~~NPvDl~g~~~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~~g~~~~~~~~~  360 (388)
T PRK00696        281 GEPANFLDVGGGATAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLEGTNVELGKKI  360 (388)
T ss_pred             CCcCCeEEecCCCCHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH
Confidence            99999999999999999999999999999999999987766777888999999987753468999888888667778888


Q ss_pred             HhhCC--CCccccCCHHHHHHHHHHhh
Q psy7785         406 LDESK--LPLIFASDLDEAASLVNACK  430 (525)
Q Consensus       406 L~~~G--vpvf~~~s~~~Av~Al~~l~  430 (525)
                      |+++|  +|+|  ++|++|++++.++.
T Consensus       361 L~~~Gi~ip~f--~~pe~A~~al~~~~  385 (388)
T PRK00696        361 LAESGLNIIAA--DTLDDAAQKAVEAA  385 (388)
T ss_pred             HHHCCCCceec--CCHHHHHHHHHHHh
Confidence            99999  7799  99999999998765

>PLN02235 ATP citrate (pro-S)-lyase

Probab=100.00  E-value=3.1e-65  Score=530.67  Aligned_cols=370  Identities=21%  Similarity=0.321  Sum_probs=333.8

Q ss_pred             hccccHHhhhh---hC-----CCCCCCcccc-CCHHHHHHHHHh---cCCCcEEEEEeeccccCCCCCccCCCcceEEEe
Q psy7785           8 QIANFSYLVKP---VS-----TVHSTDKVCL-EDARTATNILKD---LNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT   75 (525)
Q Consensus         8 ~~~~~e~~~k~---~~-----GIpvp~~~~~-~~~eea~~~a~~---lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~   75 (525)
                      +..+.||++|+   +|     |||+|++.++ ++++|+.+++++   +|.+++|||+|++.|||||       .|||+++
T Consensus         3 ~~~l~EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGK-------aGGVk~~   75 (423)
T PLN02235          3 RKKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGK-------SGLVALN   75 (423)
T ss_pred             cccccHHHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcc-------cCceEEe
Confidence            45688999999   77     9999999999 999999999988   8865679999999999999       8999999


Q ss_pred             CCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCe
Q psy7785          76 NNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHL  155 (525)
Q Consensus        76 ~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~  155 (525)
                      .|++|+++.+++|+++.+.++  +++| .+++|||||++++.+|+|++++.|+...  .|++|..||++||.    +|+.
T Consensus        76 ~s~~Ea~~~a~~~Lg~~l~t~--g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~~~--~ii~S~~GGvdIEe----~pe~  146 (423)
T PLN02235         76 LDLAQVATFVKERLGKEVEMG--GCKG-PITTFIVEPFVPHDQEFYLSIVSDRLGC--SISFSECGGIEIEE----NWDK  146 (423)
T ss_pred             CCHHHHHHHHHHHhCCceEec--CCCc-cEeEEEEEecCCCcceEEEEEEEecCCC--EEEEECCCCCcccC----ChhH
Confidence            999999999999999988654  6678 7999999999999999999999999983  49999999999996    6889


Q ss_pred             EEEEecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhc
Q psy7785         156 VKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLS  235 (525)
Q Consensus       156 ~~~~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~  235 (525)
                      +.+++++|..+++++.+++++..++.                                   ...+.+.+++.+||++|.+
T Consensus       147 i~k~~Id~~~gl~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~l~~Ly~~F~~  191 (423)
T PLN02235        147 VKTIFLPTEAPLTSEICAPLIATLPL-----------------------------------EIRGKIEEFIKGVFAVFQD  191 (423)
T ss_pred             eEEEEcCCCCCCCHHHHHHHHHhCCH-----------------------------------HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887642                                   2467789999999999999


Q ss_pred             CCCceeeeeceeEecCCcEEEeeeEEEecCCchhcccc-ccccCC----CCCCChHhh------hhhccCCce--eccCC
Q psy7785         236 VDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKN-IFSQNE----VSESDPREV------DASKYNLNY--VGMDG  302 (525)
Q Consensus       236 ~~~~~leiNPl~v~~~g~~~alDa~i~ld~~a~frq~~-i~~~~~----~~~~~~~E~------~a~~~~l~~--~~~~~  302 (525)
                      +|++++|||||++ .+|+++|+|+++.+||||.|||+. +.....    -.+.+++|.      .+..++++|  ++++|
T Consensus       192 ~D~tllEINPLv~-~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG  270 (423)
T PLN02235        192 LDFTFLEMNPFTL-VDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKG  270 (423)
T ss_pred             cCCeEEEecceEe-eCCCEEEEEeEEcccCCCcccCHhHhhhhcccccccCCCCHHHHhhccchhhhccCCceEEeCCCC
Confidence            9999999999999 888999999999999999999997 543310    123478888      666788999  89999


Q ss_pred             cEEEEecchhHHHHHHHHHHHcC--CCCCCeeeecCCCCHHHHHHHHHHHh----cCCCccEEEEEecccccChHHHH--
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHG--GEPANFLDVGGGVNEESIIQAFRIIS----SDSNVKCILVNVFGGIVNCATIA--  374 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~G--l~~aNPlDl~g~a~~~~~~~al~~ll----~dp~vd~vlv~~~~~~~~~~~ia--  374 (525)
                      +||+|+||||++|.++|.+..+|  ++|+||+|++|+++.+++++++++++    +||++++++||+++|+++|+.+|  
T Consensus       271 ~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~t  350 (423)
T PLN02235        271 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAAT  350 (423)
T ss_pred             eEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhh
Confidence            99999999999999999999999  89999999999999999999999998    89999999999999999999999  


Q ss_pred             -HHHHHHHHhcC-----CCCcEEEEeCCcchHHHHHHHh----hCCCCccccC---CHHHHHHHHHHh
Q psy7785         375 -KGLVNACKSFK-----LSIPLVVRLEGTNVQEGKRILD----ESKLPLIFAS---DLDEAASLVNAC  429 (525)
Q Consensus       375 -~~i~~a~~~~~-----~~kPivv~~~g~~~~~~~~~L~----~~Gvpvf~~~---s~~~Av~Al~~l  429 (525)
                       ++|+++.++++     .++||++++.|++.++++++|+    +.|+|+..++   ++++|++.+..|
T Consensus       351 f~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~~il~e~~~~~gl~i~~~~~~~~m~~a~~~av~~  418 (423)
T PLN02235        351 FNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAIDY  418 (423)
T ss_pred             hhHHHHHHHHhhhccccCCccEEEECCCCCHHHHHHHHHHhHHhcCCcEEEeCCCCCHHHHHHHHHhh
Confidence             99999999864     4789999999999999999998    8898776667   999999988764

>KOG1447|consensus

Probab=100.00  E-value=3.1e-64  Score=482.51  Aligned_cols=384  Identities=60%  Similarity=0.933  Sum_probs=367.8

Q ss_pred             ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785          11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK   87 (525)
Q Consensus        11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~   87 (525)
                      +.||++|+   +||+.+-+..++.+..|+.+++++++.+.+|+|+|+++|||||+.|.++..|||++..++..+-+.+++
T Consensus        22 LqEfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~q  101 (412)
T KOG1447|consen   22 LQEFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQ  101 (412)
T ss_pred             HHHhhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHH
Confidence            45699999   899999999999999999999999998789999999999999999999999999999999999999999


Q ss_pred             HhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCC
Q psy7785          88 MIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGI  167 (525)
Q Consensus        88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l  167 (525)
                      |++..+.+++++..|..++.|+|.+-+++.+|.|+.+..|++..||+++.|+.||++||.++.++|+.+++.|||...|+
T Consensus       102 MIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~Ifk~piDI~~gi  181 (412)
T KOG1447|consen  102 MIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELIFKEPIDIFEGI  181 (412)
T ss_pred             HHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhhccccchhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeecee
Q psy7785         168 TESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLV  247 (525)
Q Consensus       168 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl~  247 (525)
                      +++.+.+|.+.|++.|.                                 .+...++.+.+||.+|...|.+.+|||||.
T Consensus       182 ~esq~l~~Ak~L~F~G~---------------------------------l~~~aA~eI~kLY~LF~avDAtQvEiNPl~  228 (412)
T KOG1447|consen  182 KESQALRMAKNLGFVGP---------------------------------LKSQAADEITKLYNLFLAVDATQVEINPLG  228 (412)
T ss_pred             chHHHHHHHHhccccCc---------------------------------HHHHHHHHHHHHHHHHhhhcceEEEecccc
Confidence            99999999999887544                                 567788999999999999999999999999


Q ss_pred             EecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCCC
Q psy7785         248 ETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGE  327 (525)
Q Consensus       248 v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~  327 (525)
                      -|++|+++++||+|.+||++.|||++|+...+.+|.+|.|.++.+++++|+-+.|+|+++.||.|++|.++|.+..+|++
T Consensus       229 ET~~G~V~cvDAK~NFDDnA~fRQKdIFamd~~eE~dPrEveAakynLnYigmDGNIaClVNGAGLAMATmDiIkLnGGe  308 (412)
T KOG1447|consen  229 ETPEGQVVCVDAKINFDDNAEFRQKDIFAMDDKEENDPREVEAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKLNGGE  308 (412)
T ss_pred             cCCCceEEEEeeeccCCchHhhhhcceeecccccccCchhhhhhhcCcceeeccCceEEEEccchhhhheeeeEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHh
Q psy7785         328 PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILD  407 (525)
Q Consensus       328 ~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~  407 (525)
                      |+||+|++|.+..++++++++++.+||.|.+++||+|+|+.+|..+|.+|+.++++...+.|+|+++.|++..++.++|.
T Consensus       309 PANFLDvGGgV~EdqV~~Af~ilTaDPkVk~iLvNiFGGIVNCAtIANGiv~A~~kl~LnVPlVVRLEGTNV~~A~~Ilk  388 (412)
T KOG1447|consen  309 PANFLDVGGGVKEDQVYQAFKILTADPKVKAILVNIFGGIVNCATIANGIVKACRKLELNVPLVVRLEGTNVQEAQKILK  388 (412)
T ss_pred             CcceeeccCcccHHHHHHHhhhhccCCceeEEEEehhcceehhHhHhhHHHHHHHhhcCCCcEEEEEcCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             hCCCCccccCCHHHHHHHHH
Q psy7785         408 ESKLPLIFASDLDEAASLVN  427 (525)
Q Consensus       408 ~~Gvpvf~~~s~~~Av~Al~  427 (525)
                      ..|+|+....+.++|+....
T Consensus       389 ~SGLpI~tA~dLddAA~KAV  408 (412)
T KOG1447|consen  389 KSGLPITTAIDLDDAAKKAV  408 (412)
T ss_pred             hcCCceeeccchHHHHHHHh
Confidence            99999987778888776654

>KOG2799|consensus

Probab=100.00  E-value=1.6e-60  Score=472.55  Aligned_cols=392  Identities=47%  Similarity=0.726  Sum_probs=369.4

Q ss_pred             hhhhccccH--Hhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcc
Q psy7785           5 FNQQIANFS--YLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQ   79 (525)
Q Consensus         5 ~~~~~~~~e--~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~e   79 (525)
                      |+|.|.+.-  |.+.+   +|||.+|++.+++|+|||.++++++|..-+|+|+|++++||||++|+|+..|||++..+|+
T Consensus        17 ~~~~r~L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~   96 (434)
T KOG2799|consen   17 FQAERSLGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQ   96 (434)
T ss_pred             hhHhhhhhHHHHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChH
Confidence            444444432  55555   8999999999999999999999999877899999999999999999999999999999999


Q ss_pred             cHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEE
Q psy7785          80 DIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTI  159 (525)
Q Consensus        80 ea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~  159 (525)
                      |+++.+.+|+++++.++|+++.|..++.|+|.+......|+|++++.|+++.||+++.+.+||+.+|.++..+||.+.+.
T Consensus        97 Eak~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pdai~k~  176 (434)
T KOG2799|consen   97 EAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAIIKK  176 (434)
T ss_pred             HHHHHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCccchhcc
Confidence            99999999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCc
Q psy7785         160 PIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDAT  239 (525)
Q Consensus       160 ~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~  239 (525)
                      |++-..||++..|.++...|++                                 ++..+..+.+.+.+||.+|...|.+
T Consensus       177 pi~~~~Gls~~~a~~v~~~lgf---------------------------------s~~~~~~a~~~~~kly~vf~~~dat  223 (434)
T KOG2799|consen  177 PIDNNTGLSPEIACLVADKLGF---------------------------------SPDGIRKAAKAVPKLYKVFHKSDAT  223 (434)
T ss_pred             cccccCCCCHHHHHHHHhhcCC---------------------------------CcccHHHHHHHHHHHHHHHhhccce
Confidence            9999999999999999888776                                 4557889999999999999999999


Q ss_pred             eeeeeceeEecCC-cEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHH
Q psy7785         240 QLEINPLVETDER-EVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATM  318 (525)
Q Consensus       240 ~leiNPl~v~~~g-~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaa  318 (525)
                      .+|||||..+.++ .+++-|+|+.+|+|+.|||..++.++|+++++++|..+.++.++|+.+.|+|+++.|+.|.+|.++
T Consensus       224 ~veinpl~e~t~d~~v~c~dak~~fd~na~fRq~~iF~~rd~~QEd~re~~aak~~ln~igldG~igC~vngaglamaTm  303 (434)
T KOG2799|consen  224 QVEINPLAEITSDHKVTCMDAKLNFDDNAAFRQKKIFLLRDLSQEDPREVTAAKVDLNYIGLDGNIGCLVNGAGLAMATM  303 (434)
T ss_pred             eEEecchhhcccCceeeechhhhcccccHHHHhhhhhhccchhhcCchhhhHHHhccceeccCCccceeeccchhhhhhe
Confidence            9999999988766 799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcc
Q psy7785         319 DIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTN  398 (525)
Q Consensus       319 D~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~  398 (525)
                      |.+..+|++|+|++|++|.++.+...++++.+.+||+++++++|+++|+..|+.+|.+++.+.+++..+.||++++.|++
T Consensus       304 diiklhgg~panfldVGg~Atve~v~eaf~litsd~kv~ailvnifGgi~rCDvia~Giv~aar~l~~~ipiv~rlqgt~  383 (434)
T KOG2799|consen  304 DIIKLHGGTPANFLDVGGGATVEQVREAFSLITSDKKVMAILVNIFGGIMRCDVIAFGIVLAARELELNIPIVVRLQGTR  383 (434)
T ss_pred             eeeeecCCCCcceeeeCCCCcHHHHHHHHHHHhcChhHHHHHHHHhcCeeeccceecchhhhhhhhhcCCCEEEEecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999888999999999998


Q ss_pred             hHHHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785         399 VQEGKRILDESKLPLIFASDLDEAASLVNAC  429 (525)
Q Consensus       399 ~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l  429 (525)
                      .+++..++...|+-++.+++.++|...+...
T Consensus       384 v~~ak~~i~~sgmri~~~deldeaa~~~v~~  414 (434)
T KOG2799|consen  384 VEAAKPIINTSGMRIRSFDELDEAAKKAVGG  414 (434)
T ss_pred             hhhhhhhHhhcCceEEechhhhHHhhhhccc
Confidence            8999999999999998889999988876443

>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []

Probab=100.00  E-value=2.1e-41  Score=325.07  Aligned_cols=198  Identities=41%  Similarity=0.578  Sum_probs=175.9

Q ss_pred             ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785          11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK   87 (525)
Q Consensus        11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~   87 (525)
                      +.||++|+   +||||+|++.++++++|+.++++++|.+++|+|+|+++|||||       .|||+++.|++|+++.+++
T Consensus         2 l~EyqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK-------~GgVk~~~s~~ea~~~a~~   74 (202)
T PF08442_consen    2 LHEYQAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGRGK-------AGGVKIAKSPEEAKEAAKE   74 (202)
T ss_dssp             E-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTT-------TTCEEEESSHHHHHHHHHT
T ss_pred             chHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCccc-------CCceeecCCHHHHHHHHHH
Confidence            56899999   8999999999999999999999999976789999999999999       7999999999999999999


Q ss_pred             HhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCC
Q psy7785          88 MIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGI  167 (525)
Q Consensus        88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l  167 (525)
                      |+++.+.++|+++.|..+++|||||++++.+|+|++++.||.+++|+|++|..||++||.++.++|+.+.+++++|..|+
T Consensus        75 mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~~g~  154 (202)
T PF08442_consen   75 MLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPTEGL  154 (202)
T ss_dssp             TTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTTTB-
T ss_pred             HhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeecee
Q psy7785         168 TESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLV  247 (525)
Q Consensus       168 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl~  247 (525)
                      +++.+++++..++++                                 +...+.+.+++.+||++|.++|++++|||||+
T Consensus       155 ~~~~~~~i~~~lg~~---------------------------------~~~~~~~~~~l~~Ly~~F~~~DatllEINPL~  201 (202)
T PF08442_consen  155 TPYQAREIAKKLGLP---------------------------------GKLAEQLADILKKLYRLFREYDATLLEINPLV  201 (202)
T ss_dssp             -HHHHHHHHHHTTS----------------------------------CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHHHHHHHcCCcEEEecCCC
Confidence            999999999998874                                 33688999999999999999999999999997


Q ss_pred             E
Q psy7785         248 E  248 (525)
Q Consensus       248 v  248 (525)
                      +
T Consensus       202 ~  202 (202)
T PF08442_consen  202 E  202 (202)
T ss_dssp             E
T ss_pred             C
Confidence            5

They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....

>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A

Probab=100.00  E-value=4.2e-41  Score=327.71  Aligned_cols=213  Identities=18%  Similarity=0.226  Sum_probs=152.0

Q ss_pred             hhhhcc-ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeC-Ccc
Q psy7785           5 FNQQIA-NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN-NVQ   79 (525)
Q Consensus         5 ~~~~~~-~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~-~~e   79 (525)
                      .+.+++ ++|+++|+   .||||+|++.+++|++|+.++++++|| |||+|+.++.- .||    |+ +|||++++ |++
T Consensus         3 ~~~g~~~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~-PvvlKi~sp~i-~HK----sd-~GgV~L~l~~~~   75 (222)
T PF13549_consen    3 LAEGRGWLTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGF-PVVLKIVSPDI-AHK----SD-VGGVRLNLNSPE   75 (222)
T ss_dssp             HHTT--EE-HHHHHHHHHTTT------EEESSHHHHHHHHHHH-S-SEEEEEE-TT----H----HH-HT-EEEEE-SHH
T ss_pred             ccCCCCccCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCC-CEEEEEecCCC-CcC----CC-CCcEEECCCCHH
Confidence            344444 45699999   899999999999999999999999997 99999976521 134    44 99999997 799


Q ss_pred             cHHHHHHHHhccccccccCCCCCcccCeEEEEeeeC-CceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEE
Q psy7785          80 DIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVN-ITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKT  158 (525)
Q Consensus        80 ea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~-~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~  158 (525)
                      ++++++++|..+..   .+.| +..+.+|+||+|++ .+.|+++|+++||.| ||+|+|| .||+++|.++|    .  .
T Consensus        76 ~v~~a~~~l~~~~~---~~~p-~~~~~gvlVq~m~~~~g~El~vG~~~Dp~F-GPvv~~G-~GG~~vE~~~D----~--~  143 (222)
T PF13549_consen   76 EVREAFERLRERVA---AHHP-GARIDGVLVQEMAPSGGRELIVGVRRDPQF-GPVVMFG-LGGIFVELLKD----V--A  143 (222)
T ss_dssp             HHHHHHHHHHHHHH---HH-T-T----EEEEEE------EEEEEEEEEETTT-EEEEEEE-E-STTHHHH---------E
T ss_pred             HHHHHHHHHHHHHH---HhCC-CCccceEEEEEcccCCcEEEEEEEEECCCC-CCEEEEc-CCCceeeeecc----e--E
Confidence            99999999998643   2223 44589999999998 899999999999999 9999999 99999999996    3  4


Q ss_pred             EecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcC-C
Q psy7785         159 IPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSV-D  237 (525)
Q Consensus       159 ~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~-~  237 (525)
                      +.++|   +|..+|++|+++++.            +++|.||||.           |+.|+++|.++++++|+++.++ +
T Consensus       144 ~~l~P---l~~~~a~~mi~~l~~------------~~lL~G~RG~-----------p~~d~~al~~~l~~ls~l~~~~p~  197 (222)
T PF13549_consen  144 FRLPP---LSEADAREMIRELRA------------YPLLRGYRGR-----------PPADLDALADLLVRLSQLAADLPE  197 (222)
T ss_dssp             EEESS-----HHHHHHHHHTSTT------------HHHHH------------------B-HHHHHHHHHHHHHHHHHTTT
T ss_pred             EeeCC---CCHHHHHHHHHHHHh------------HHhhcccCCC-----------CCcCHHHHHHHHHHHHHHHHhCCC
Confidence            66788   999999999998876            6899999997           8899999999999999999986 6


Q ss_pred             CceeeeeceeEecCCcEEEeeeEEEe
Q psy7785         238 ATQLEINPLVETDEREVISVDAKINF  263 (525)
Q Consensus       238 ~~~leiNPl~v~~~g~~~alDa~i~l  263 (525)
                      +.|+|||||+++++| ++|+|++|++
T Consensus       198 I~eldiNPl~v~~~g-~~avDa~i~l  222 (222)
T PF13549_consen  198 IAELDINPLIVTPDG-AVAVDARIRL  222 (222)
T ss_dssp             EEEEEEEEEEE-BS--EEE--EEEEE
T ss_pred             EEEEEeeceEEcCCc-eEEEEEEEEC
Confidence            999999999999998 9999999986

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=99.92  E-value=6.6e-26  Score=247.95  Aligned_cols=422  Identities=17%  Similarity=0.160  Sum_probs=278.6

Q ss_pred             cccHHhhhh---hCC----CCCCCcc------ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeC
Q psy7785          10 ANFSYLVKP---VST----VHSTDKV------CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN   76 (525)
Q Consensus        10 ~~~e~~~k~---~~G----Ipvp~~~------~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~   76 (525)
                      ...+++++.   .||    +||++..      .+-+..........+++ ++|.|..++... ++    ++ .+||+.+.
T Consensus        23 ~~vg~~i~~nL~~~g~g~i~PVnp~~~~v~G~~ay~s~~~lp~~~dlav-~~v~~~~~~~i~-~~----~~-~kGv~~~i   95 (598)
T COG1042          23 GKLGYEILRNLLEYGQGKIYPVNPKYDEVLGVKAYTSVADLPDAPDLAV-IVVPAKVVPEIV-HE----LG-EKGVKGAI   95 (598)
T ss_pred             chhHHHHHHHHHhcCCCceEecCccccccccccccchHhhCCCCCCeeE-EEechhhhHHHH-HH----hh-ccCCceEE
Confidence            456788888   899    9998777      45555555556667786 888886443211 11    22 56776663


Q ss_pred             -CcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEE--EEEcCCCCccEEEecCCCCcccccccccCC
Q psy7785          77 -NVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFC--IVQDRLHNGPVVIISPSGGTDIENVAAKTP  153 (525)
Q Consensus        77 -~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vg--v~~D~~f~gpvi~~g~~GGv~iE~~~~~~~  153 (525)
                       .....+++.+++......  .. +........++.++..+..+..+|  ++.+|.| ++.  ++ -|+..++...+   
T Consensus        96 ~is~gf~e~~~~~~~~e~~--~~-~~a~~~~~rligPn~~G~~~~~~glna~f~p~~-~~~--~~-g~~afvsqsga---  165 (598)
T COG1042          96 VISAGFREAGEEGMELEKE--LV-EAARKYGMRIIGPNCLGLINPIIGLNATFDPVF-GLG--RG-GGGAFVSQSGA---  165 (598)
T ss_pred             EechhhhHHhhhHhHHHHH--HH-HHHHhcCceEeccccccccccccccccccCccc-ccc--cC-CCeEEEEechH---
Confidence             333344444432211100  00 001123568999999989999999  8888888 555  55 56778887764   


Q ss_pred             CeEEEEecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q psy7785         154 HLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLF  233 (525)
Q Consensus       154 ~~~~~~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~  233 (525)
                       .  .+.+.+   .+..+      .++++-.        +.....+.           ++....+...+.|...+...++
T Consensus       166 -v--~~~il~---~~~~~------~~g~s~~--------vs~gn~ad-----------~~~~d~~~~~~~D~~tk~i~Ly  214 (598)
T COG1042         166 -V--SFAILD---WANED------GMGFSIK--------VSLGNAAD-----------RDESDLLEYLADDPRTKAIGLY  214 (598)
T ss_pred             -H--HHhccc---hhhhc------CCceeEE--------Eeecchhh-----------cCchHhHHHHhhCccceEEEEE
Confidence             2  222333   11111      2222100        00000111           1123333444445555555555


Q ss_pred             hcC-CCceeeeeceeEecCC-cEEEeeeEEEec------------------CCchhccccccccCCCCCCChHhhhhhcc
Q psy7785         234 LSV-DATQLEINPLVETDER-EVISVDAKINFD------------------DNAEFRQKNIFSQNEVSESDPREVDASKY  293 (525)
Q Consensus       234 ~~~-~~~~leiNPl~v~~~g-~~~alDa~i~ld------------------~~a~frq~~i~~~~~~~~~~~~E~~a~~~  293 (525)
                      .+. +..+.++||+.....+ .++++|+..+..                  -++.|||.|++++     .+..|+.+...
T Consensus       215 ~E~~~~~r~fl~~a~~~~~~kpii~lk~gr~~~~akAa~shTgslag~~~~y~Aa~~~agvir~-----~~~~elf~~~k  289 (598)
T COG1042         215 IEGVKDGRKFLNAARAAERKKPIIALKAGRSEAGAKAAASHTGSLAGSDEAYDAAFKQAGVIRV-----ESIEELFDAAK  289 (598)
T ss_pred             eccchhHHHHHHHHHHHhcCCCEEEEeccCCHHHHHHHhcccccccccchhhHHHHHhhCceec-----cChHHHHHHHH
Confidence            553 4556778888765543 388888776632                  1467999999998     55688877665


Q ss_pred             CCcee-cc-CCcEEEEecchhHHHHHHHHHHHcCC---------------------CCCCeeeecCCCCHHHHHHHHHHH
Q psy7785         294 NLNYV-GM-DGNIGCLVNGAGLAMATMDIIKLHGG---------------------EPANFLDVGGGVNEESIIQAFRII  350 (525)
Q Consensus       294 ~l~~~-~~-~~rIaIitnsGG~gvlaaD~~~~~Gl---------------------~~aNPlDl~g~a~~~~~~~al~~l  350 (525)
                      .+... ++ +.|++++|||||.|++++|.|.+.|+                     +..||+|++|++..+.|.++++.+
T Consensus       290 ~l~~~~~~~g~~~~ivtn~Gg~gvla~D~l~~~g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~  369 (598)
T COG1042         290 ALSHQPPPAGDRVAIITNGGGPGVLAADALEERGLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEIL  369 (598)
T ss_pred             HhccCCCCCCcceeEEecCCCccccchhHHHHcCCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHH
Confidence            55533 33 56999999999999999999999997                     268999999999999999999999


Q ss_pred             hcCCCccEEEEEec-ccccChHHHHHHHHHHHHhcCCCCcEEEEeCCc-chHHHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785         351 SSDSNVKCILVNVF-GGIVNCATIAKGLVNACKSFKLSIPLVVRLEGT-NVQEGKRILDESKLPLIFASDLDEAASLVNA  428 (525)
Q Consensus       351 l~dp~vd~vlv~~~-~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~-~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~  428 (525)
                      ++|+++|++++... +........++.++.+ ...+.+||++++++|. ....+.+.|++.|||+|  .+|++|++++..
T Consensus       370 ~~~~~~~~llvi~~~~~~~~~~~~a~~~~~~-~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip~~--~~pe~a~~a~~~  446 (598)
T COG1042         370 LRDENVDALLVIVLPPASADPEETAEAIIRA-TAKKRGKPVVVSSMGGESSEKARRLLEEAGIPTY--PTPERAVKALSA  446 (598)
T ss_pred             HhccCCceEEEEecCCCCCCchhhhHHHHHh-hhhhCCCceEEEecCCcchHHHHHHhhhcCCCCc--cCchHHHHHHHH
Confidence            99999999998654 3344466778888875 2223679988765554 67777889999999999  999999999987


Q ss_pred             hhccc------CCCCeEE--EeCCCCHHHHHHHHHHCCCCe--EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHH
Q psy7785         429 CKSFK------LSIPLVV--RLEGTNVQEGKRILDESKLPL--IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQE  497 (525)
Q Consensus       429 l~~~~------~~~P~~~--~l~g~~e~eak~LL~ayGIpv--~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~  497 (525)
                      ++++.      ...+...  .....++.|++++|.+|||++  .++++.+||..   +++.+  |     |+.++++..
T Consensus       447 l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~gi~~~~~~~~~~~ea~~---~a~~~--~-----Kl~s~~i~h  515 (598)
T COG1042         447 LARYRRWLKKLRETPVFEGGGGTTLDEPEAKELLEAYGIPVPATIASTLDEAVH---IAESI--G-----KLRSPDIDH  515 (598)
T ss_pred             HHHHHHHHHhhccCcccccCCccccCchhhhhHHHHhcCcccccccCCHHHHHH---HHHHh--h-----hccCCccch
Confidence            76532      1122210  111157889999999999999  88889999988   56563  5     888887654

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=99.83  E-value=5.7e-20  Score=197.69  Aligned_cols=158  Identities=23%  Similarity=0.334  Sum_probs=132.9

Q ss_pred             chhccccccccCCCCCCChHhhhhhccCCceecc--CCcEEEEecchhHHHHHHHHHHHcCCC-----------------
Q psy7785         267 AEFRQKNIFSQNEVSESDPREVDASKYNLNYVGM--DGNIGCLVNGAGLAMATMDIIKLHGGE-----------------  327 (525)
Q Consensus       267 a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~--~~rIaIitnsGG~gvlaaD~~~~~Gl~-----------------  327 (525)
                      +.|||.|+++++     +.+|+......|...++  ++||+|||||||.|++++|.++++|++                 
T Consensus       264 a~~~~~Gv~~~~-----~~~el~~~~~~l~~~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp  338 (447)
T TIGR02717       264 AAFKQAGVIRAD-----SIEELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILP  338 (447)
T ss_pred             HHHHHCCeEEeC-----CHHHHHHHHHHHhcCCCCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCc
Confidence            689999999994     44788877666665555  579999999999999999999999984                 


Q ss_pred             ----CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEec-ccccChHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHH
Q psy7785         328 ----PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVF-GGIVNCATIAKGLVNACKSFKLSIPLVVRLEG-TNVQE  401 (525)
Q Consensus       328 ----~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~-~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~  401 (525)
                          +.||+|+++..+++.|.++++++++||++|++++++. ++...++.+++.++++.++. .+||++++|.| ...++
T Consensus       339 ~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~~~~-~~KPvv~~~~gg~~~~~  417 (447)
T TIGR02717       339 PEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKS-NEKPVVAGFMGGKSVDP  417 (447)
T ss_pred             cccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHHHhc-CCCcEEEEecCCccHHH
Confidence                4599999988999999999999999999999998654 33456678899999887762 28999988876 45566


Q ss_pred             HHHHHhhCCCCccccCCHHHHHHHHHHhhcc
Q psy7785         402 GKRILDESKLPLIFASDLDEAASLVNACKSF  432 (525)
Q Consensus       402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~  432 (525)
                      .++.|+++|||+|  ++|++|++++.++.++
T Consensus       418 ~~~~L~~~Gip~f--~~p~~A~~al~~~~~~  446 (447)
T TIGR02717       418 AKRILEENGIPNY--TFPERAVKALSALYRY  446 (447)
T ss_pred             HHHHHHhCCCCcc--CCHHHHHHHHHHHHhh
Confidence            7788999999999  9999999999987653

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6

Probab=99.40  E-value=2e-12  Score=119.00  Aligned_cols=119  Identities=39%  Similarity=0.570  Sum_probs=106.7

Q ss_pred             EecchhHHHHHHHHHHHc--------------CCCCCCeeeecCCCC----------HHHHHHHHHHHhcCCCccEEEEE
Q psy7785         307 LVNGAGLAMATMDIIKLH--------------GGEPANFLDVGGGVN----------EESIIQAFRIISSDSNVKCILVN  362 (525)
Q Consensus       307 itnsGG~gvlaaD~~~~~--------------Gl~~aNPlDl~g~a~----------~~~~~~al~~ll~dp~vd~vlv~  362 (525)
                      +.+|||+++-++|.+...              |..++|++|++|+..          ++...++++.+++||++.+|+++
T Consensus         1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd   80 (153)
T PF00549_consen    1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD   80 (153)
T ss_dssp             EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred             CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence            589999999999999999              999999999999999          67899999999999999999999


Q ss_pred             ecccccChHHHHHHHHHHHHhcC---CCCcEEEEeCCcchH-----HHHHHHhhCCCCccccCCHHHHHHHHH
Q psy7785         363 VFGGIVNCATIAKGLVNACKSFK---LSIPLVVRLEGTNVQ-----EGKRILDESKLPLIFASDLDEAASLVN  427 (525)
Q Consensus       363 ~~~~~~~~~~ia~~i~~a~~~~~---~~kPivv~~~g~~~~-----~~~~~L~~~Gvpvf~~~s~~~Av~Al~  427 (525)
                      ++.|+..+++.|.+++.+.++.+   .++|+|++..|++.+     +..+.|++.|++++  .+-.+|++...
T Consensus        81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~~~~L~~~G~~v~--~s~~~A~~~A~  151 (153)
T PF00549_consen   81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQAGALEDAGVIVA--ESNAQAARAAG  151 (153)
T ss_dssp             EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHHHHHHHCTTCSCH--HHHHHHHHHHT
T ss_pred             eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHHHHHHHhCCCccc--ccHHHHHHHcC
Confidence            99999999999999999987754   679999999997666     77889999999999  88777776653

2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....

>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6

Probab=99.08  E-value=5.5e-10  Score=106.63  Aligned_cols=96  Identities=21%  Similarity=0.285  Sum_probs=77.9

Q ss_pred             hhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcE-EEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhc
Q psy7785          15 LVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEY-VIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG   90 (525)
Q Consensus        15 ~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~Pv-VlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~   90 (525)
                      .+|+   +|||||+++..++|.++|.+++++.++ |+ |||++.+++|  |         ||.+..|.+++.+++++++.
T Consensus         5 faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~-p~~ViKadGla~G--K---------GV~i~~~~~eA~~~l~~~~~   72 (194)
T PF01071_consen    5 FAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQGY-PYVVIKADGLAAG--K---------GVVIADDREEALEALREIFV   72 (194)
T ss_dssp             HHHHHHHHTT-SB--EEEESSHHHHHHHHHHHSS-SEEEEEESSSCTT--T---------SEEEESSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCeeEECCHHHHHHHHHhcCC-CceEEccCCCCCC--C---------EEEEeCCHHHHHHHHHHhcc
Confidence            4555   899999999999999999999999997 78 9999999875  5         89999999999999999997


Q ss_pred             cccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          91 HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        91 ~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                      ...       -|...++|+|||++. |.|+.+.+..|...
T Consensus        73 ~~~-------fg~~~~~vvIEE~l~-G~E~S~~a~~dG~~  104 (194)
T PF01071_consen   73 DRK-------FGDAGSKVVIEEFLE-GEEVSLFALTDGKN  104 (194)
T ss_dssp             SST-------TCCCGSSEEEEE----SEEEEEEEEEESSE
T ss_pred             ccc-------cCCCCCcEEEEeccC-CeEEEEEEEEcCCe
Confidence            422       244457899999997 89999999999875

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=99.08  E-value=4.4e-11  Score=131.82  Aligned_cols=122  Identities=12%  Similarity=0.182  Sum_probs=101.3

Q ss_pred             ccccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHH
Q psy7785           9 IANFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPIL   85 (525)
Q Consensus         9 ~~~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~   85 (525)
                      ....++++++   +|||++|.+ ++.+++|+..+++.++      |.....-. ||    | ++|||.++.+..++++++
T Consensus       469 ~~~~~~e~~~~l~~~gi~~~~~-~~~~~~ea~~~a~~~~------Kl~s~~i~-hk----s-ev~gv~l~~~~~~v~~a~  535 (598)
T COG1042         469 TTLDEPEAKELLEAYGIPVPAT-IASTLDEAVHIAESIG------KLRSPDID-HK----S-EVGGVMLNRTADAVEKAA  535 (598)
T ss_pred             cccCchhhhhHHHHhcCccccc-ccCCHHHHHHHHHHhh------hccCCccc-hh----h-hccceeecCcHHHHHHHH
Confidence            4556788888   899999999 9999999999999986      54322110 34    4 499999997789999999


Q ss_pred             HHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCC
Q psy7785          86 EKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDV  163 (525)
Q Consensus        86 ~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p  163 (525)
                      ..++.+        |  ..+.+++||+|..  .|+++++.+||.| ||+++|| .||+.+|.++|    .  .+.++|
T Consensus       536 ~~~~~~--------p--a~i~g~lvq~m~~--~E~~vgv~~dp~f-gp~i~~G-~Gg~~ve~l~d----~--~~~~~P  593 (598)
T COG1042         536 DDILAR--------P--ARIAGVLVQTMAK--LELIVGVKNDPTF-GPLILFG-EGGIEVEVLKD----V--VVALPP  593 (598)
T ss_pred             HhHhcc--------c--chhhhhhhHhhhh--ccceeeccCCCcc-hhHHHhc-CCceEEEeecc----e--eeccCC
Confidence            999765        2  3489999999998  9999999999999 9999999 99999999985    3  455666

>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]

Probab=98.92  E-value=3.8e-09  Score=110.04  Aligned_cols=97  Identities=16%  Similarity=0.210  Sum_probs=84.2

Q ss_pred             Hhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhc
Q psy7785          14 YLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG   90 (525)
Q Consensus        14 ~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~   90 (525)
                      ..+|+   +||||++.+..++++++|.++++++|. |+|||++.+++|  |         ||.+..+.+||.+++++|+.
T Consensus       105 ~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~-piVVKadGLaaG--K---------GV~V~~~~eeA~~a~~~~l~  172 (428)
T COG0151         105 AFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGA-PIVVKADGLAAG--K---------GVIVAMTLEEAEAAVDEMLE  172 (428)
T ss_pred             HHHHHHHHHcCCCcccccccCCHHHHHHHHHHcCC-CEEEecccccCC--C---------CeEEcCCHHHHHHHHHHHHh
Confidence            44555   899999999999999999999999996 999999999875  6         89999999999999999987


Q ss_pred             cccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          91 HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        91 ~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                      ...       .|.....|+|||+++ |.|+++-+..|...
T Consensus       173 ~~~-------fg~~g~~VVIEEfL~-GeE~S~~a~~DG~~  204 (428)
T COG0151         173 GNA-------FGSAGARVVIEEFLD-GEEFSLQAFVDGKT  204 (428)
T ss_pred             hcc-------ccCCCCcEEEEeccc-ceEEEEEEEEcCCe
Confidence            643       132246799999998 89999999999876

>PRK13789 phosphoribosylamine--glycine ligase; Provisional

Probab=98.63  E-value=1.6e-07  Score=100.93  Aligned_cols=91  Identities=19%  Similarity=0.225  Sum_probs=76.1

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+|+.+++++++| |+|||+....+|  |         ||.+..+.+|+.+++++++....     
T Consensus       118 ~~gIpt~~~~~~~~~~ea~~~~~~~~~-PvVVKp~~~~~g--k---------GV~vv~~~eel~~a~~~~~~~~~-----  180 (426)
T PRK13789        118 EAKIPTASYKTFTEYSSSLSYLESEML-PIVIKADGLAAG--K---------GVTVATEKKMAKRALKEIFKDKK-----  180 (426)
T ss_pred             HcCCCCCCeEeeCCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------cEEEECCHHHHHHHHHHHHhhcc-----
Confidence            899999999999999999999999997 999999877553  4         79999999999999999874321     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                        .|.....++|||+++ +.|+.+.+..|..
T Consensus       181 --~g~~~~~vlIEEfl~-G~E~Sv~~~~dg~  208 (426)
T PRK13789        181 --FGQSGNQVVIEEFME-GQEASIFAISDGD  208 (426)
T ss_pred             --ccCCCCeEEEEECcC-CeEEEEEEEECCC
Confidence              122235799999998 4899999998864

>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis

Probab=98.62  E-value=1.2e-06  Score=82.66  Aligned_cols=115  Identities=16%  Similarity=0.230  Sum_probs=81.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ..|||||++..+++.+|...+++++|| |+|+|.-.. |-.||         |..+..+.+++.++++.+-         
T Consensus         3 ~~gip~~~~~~i~~~~~l~~a~~~iG~-P~vlK~~~~-GYDGk---------Gq~~i~~~~dl~~a~~~~~---------   62 (172)
T PF02222_consen    3 ELGIPTAPYATIDSLEDLEEAAESIGF-PAVLKTRRG-GYDGK---------GQFVIRSEEDLEKAWQELG---------   62 (172)
T ss_dssp             HTT--B-EEEEESSHHHHHHHHHHHTS-SEEEEESSS-SCTTT---------TEEEESSGGGHHHHHHHTT---------
T ss_pred             ccCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEccCc-CcCCC---------ccEEECCHHHHHHHHHhcC---------
Confidence            479999999999999999999999997 999997322 22345         6777788999998888871         


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCCCHH
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITES  170 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l~~~  170 (525)
                            -..+++|++++..+|+.+-+.||..  |-+.++-.     +|....   +.++...+.|.. ++..
T Consensus        63 ------~~~~ilE~~v~f~~EiSvivaR~~~--G~~~~yp~-----~en~~~---~~il~~s~~Pa~-i~~~  117 (172)
T PF02222_consen   63 ------GGPCILEEFVPFDREISVIVARDQD--GEIRFYPP-----VENVHR---DGILHESIAPAR-ISDE  117 (172)
T ss_dssp             ------TSCEEEEE---ESEEEEEEEEEETT--SEEEEEEE-----EEEEEE---TTEEEEEEESCS-S-HH
T ss_pred             ------CCcEEEEeccCCcEEEEEEEEEcCC--CCEEEEcC-----ceEEEE---CCEEEEEECCCC-CCHH
Confidence                  1358999999999999999999976  56677663     565543   455566666632 4543

This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....

>PLN02257 phosphoribosylamine--glycine ligase

Probab=98.57  E-value=2.8e-07  Score=99.32  Aligned_cols=91  Identities=20%  Similarity=0.239  Sum_probs=75.1

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||||++..+++.+++.++++++|| |+|||+....+|  |         ||.+..+.+|+.+++++++....     
T Consensus       112 ~~GIptp~~~~~~~~~e~~~~~~~~g~-PvVVKp~~~~~G--k---------GV~iv~~~~el~~a~~~~~~~~~-----  174 (434)
T PLN02257        112 KYKIPTAKYETFTDPAAAKKYIKEQGA-PIVVKADGLAAG--K---------GVVVAMTLEEAYEAVDSMLVKGA-----  174 (434)
T ss_pred             HcCCCCCCeEEeCCHHHHHHHHHHcCC-CEEEEcCCCCCC--C---------CEEEECCHHHHHHHHHHHHhhhh-----
Confidence            899999999999999999999999997 999999866543  4         89999999999999999865322     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                        .|.....++|||+++ +.|+.+.+.+|..
T Consensus       175 --fg~~~~~vlIEefi~-G~E~Sv~~~~dG~  202 (434)
T PLN02257        175 --FGSAGSEVVVEEFLD-GEEASFFALVDGE  202 (434)
T ss_pred             --ccCCCCeEEEEECCC-CCEEEEEEEECCC
Confidence              122235799999998 4699998888864

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=98.55  E-value=3e-06  Score=86.68  Aligned_cols=86  Identities=15%  Similarity=0.232  Sum_probs=70.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      .+|||+|++.++++.+++..+++.+|| |+|+|+....+|  +         ||.+..+.+++.++++++..  .     
T Consensus       108 ~~gIp~p~~~~~~~~~~~~~~~~~~~~-P~ivKP~~g~~s--~---------Gv~~v~~~~el~~~~~~~~~--~-----  168 (304)
T PRK01372        108 AAGLPTPPWIVLTREEDLLAAIDKLGL-PLVVKPAREGSS--V---------GVSKVKEEDELQAALELAFK--Y-----  168 (304)
T ss_pred             HCCCCCCCEEEEeCcchHHHHHhhcCC-CEEEeeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHh--c-----
Confidence            799999999999999999999999997 999999765433  2         67777888888888777632  1     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                            ...++||+|++ +.|+.+.+..|..+
T Consensus       169 ------~~~~lvEe~i~-G~E~~v~vi~~~~~  193 (304)
T PRK01372        169 ------DDEVLVEKYIK-GRELTVAVLGGKAL  193 (304)
T ss_pred             ------CCcEEEEcccC-CEEEEEEEECCCcc
Confidence                  24699999998 79999999877554

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=98.53  E-value=1e-06  Score=104.81  Aligned_cols=132  Identities=14%  Similarity=0.252  Sum_probs=93.5

Q ss_pred             hhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          18 PVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        18 ~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      +++|||+|++..+++.+|+.++++++|| |+|||+....+|  +         |+.+..+.+|+.+++++.++..     
T Consensus       137 ~~~GIpvp~~~~v~s~ee~~~~~~~igy-PvVVKP~~g~gG--~---------Gv~iv~~~eEL~~a~~~~~~~s-----  199 (1068)
T PRK12815        137 KELGEPVPESEIVTSVEEALAFAEKIGF-PIIVRPAYTLGG--T---------GGGIAENLEELEQLFKQGLQAS-----  199 (1068)
T ss_pred             HHcCcCCCCceeeCCHHHHHHHHHHcCC-CEEEEECcCCCC--C---------ceEEECCHHHHHHHHHHHHhcC-----
Confidence            3799999999999999999999999998 999999744443  3         5667889999999998876431     


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccc---cCCCeEEEEecCCCCCCCHH----
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAA---KTPHLVKTIPIDVHQGITES----  170 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~---~~~~~~~~~~l~p~~~l~~~----  170 (525)
                            ....++||+++++.+|+.+.+.+|..-  -++++..     +|.+..   ++.+.   +.+.|.+.++..    
T Consensus       200 ------~~~~vLVEe~I~G~~E~sv~v~rD~~g--~~~~~~~-----~e~~~p~gi~tG~s---~~v~Pa~~l~~~~~~~  263 (1068)
T PRK12815        200 ------PIHQCLLEESIAGWKEIEYEVMRDRNG--NCITVCN-----MENIDPVGIHTGDS---IVVAPSQTLTDDEYQM  263 (1068)
T ss_pred             ------CCCeEEEEEccCCCeEEEEEEEEcCCC--CEEEEEe-----ceecccccccCCce---EEEecCCCCCHHHHHH
Confidence                  135799999999889999999999764  3444431     233321   12223   234554456654    


Q ss_pred             ---HHHHHHHHcCCC
Q psy7785         171 ---LAQDIADFLEFQ  182 (525)
Q Consensus       171 ---~a~~~~~~l~~~  182 (525)
                         .+.++++.|+..
T Consensus       264 l~~~a~ki~~~Lg~~  278 (1068)
T PRK12815        264 LRSASLKIISALGVV  278 (1068)
T ss_pred             HHHHHHHHHHHcCCC
Confidence               355566666653

>KOG0237|consensus

Probab=98.50  E-value=3.6e-07  Score=97.71  Aligned_cols=102  Identities=20%  Similarity=0.264  Sum_probs=86.6

Q ss_pred             Hhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhc
Q psy7785          14 YLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG   90 (525)
Q Consensus        14 ~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~   90 (525)
                      ..+|.   +|||||.+|..++++++|..+.+..+++++|+|++.++.|  |         ||.+..+.+|+-+|+++|+.
T Consensus       110 ~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~~~ViKAdGLAAG--K---------GViv~~~~~EA~eAv~sIl~  178 (788)
T KOG0237|consen  110 NFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAG--K---------GVIVAKSKEEAFEAVDSILV  178 (788)
T ss_pred             HHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhCCCcceEEeecccccC--C---------ceEeeccHHHHHHHHHHHHh
Confidence            45566   8999999999999999999999999988999999999875  6         89999999999999999997


Q ss_pred             cccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccE
Q psy7785          91 HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPV  134 (525)
Q Consensus        91 ~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpv  134 (525)
                      ...       .|.....|+|||+++ +.|+++-...|...-.|+
T Consensus       179 ~~~-------fg~AG~tvViEE~LE-GeEvS~laftDG~s~~~m  214 (788)
T KOG0237|consen  179 KKV-------FGSAGKTVVIEELLE-GEEVSFLAFTDGYSVRPL  214 (788)
T ss_pred             hhh-------hccccceEehhhhcC-cceEEEEEEecCcccccC
Confidence            654       345567899999998 788888888886553343

>PRK13790 phosphoribosylamine--glycine ligase; Provisional

Probab=98.47  E-value=7.3e-07  Score=94.50  Aligned_cols=87  Identities=17%  Similarity=0.220  Sum_probs=73.5

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++++|| |+|||+....+|  |         ||.+..|.+|+.++++++++...     
T Consensus        77 ~~gIptp~~~~~~~~~ea~~~~~~~g~-PvVvKp~~~~~g--k---------GV~iv~~~~el~~a~~~~~~~~~-----  139 (379)
T PRK13790         77 KYNIPTADYKEVERKKDALTYIENCEL-PVVVKKDGLAAG--K---------GVIIADTIEAARSAIEIMYGDEE-----  139 (379)
T ss_pred             HCCCCCCCEEEECCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhcCC-----
Confidence            899999999999999999999999997 999999866543  4         78899999999999999864211     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                            ...++|||+++ +.|+.+.+..|..
T Consensus       140 ------~~~vlvEe~i~-G~E~sv~~~~~g~  163 (379)
T PRK13790        140 ------EGTVVFETFLE-GEEFSLMTFVNGD  163 (379)
T ss_pred             ------CCeEEEEEccc-CceEEEEEEeeCC
Confidence                  13699999998 5899999998864

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=98.45  E-value=8.8e-07  Score=95.06  Aligned_cols=91  Identities=20%  Similarity=0.233  Sum_probs=75.0

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++++|| |||+|+....+|  +         ||.+..|.+++.+++++++....     
T Consensus       112 ~~gip~p~~~~~~~~~~~~~~~~~~~~-P~VvKP~~~~gs--~---------Gv~~v~~~~el~~~~~~~~~~~~-----  174 (420)
T PRK00885        112 RYGIPTAAYETFTDAEEALAYLDEKGA-PIVVKADGLAAG--K---------GVVVAMTLEEAKAAVDDMLAGNK-----  174 (420)
T ss_pred             HcCCCCCCeEEeCCHHHHHHHHHHcCC-CEEEEeCCCCCC--C---------cEEEeCCHHHHHHHHHHHhhccc-----
Confidence            799999999999999999999999997 999999755443  3         79999999999999999875321     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                        .+.....++|||+++ +.|+.+.+..|..
T Consensus       175 --~~~~~~~vlvEe~i~-G~E~sv~~~~~g~  202 (420)
T PRK00885        175 --FGDAGARVVIEEFLD-GEEASFFAFVDGE  202 (420)
T ss_pred             --ccCCCCeEEEEEccC-CcEEEEEEEECCC
Confidence              122235799999998 5999999998864

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=98.43  E-value=8.4e-06  Score=85.43  Aligned_cols=91  Identities=19%  Similarity=0.245  Sum_probs=72.8

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+|++..+++.+++.++++++|| |+|+|+.... +  |+         ||.+..+.+++.++++++..       
T Consensus       108 ~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~~g~~--g~---------Gv~~v~~~~el~~a~~~~~~-------  168 (352)
T TIGR01161       108 KLGLPVPPFLVIKDEEELDAALQELGF-PVVLKARTGGYD--GR---------GQYRIRNEADLPQAAKELGD-------  168 (352)
T ss_pred             HcCCCCCCccEeCCHHHHHHHHHHcCC-CEEEEeCCCCCC--CC---------CEEEECCHHHHHHHHHhcCC-------
Confidence            799999999999999999999999997 9999996431 2  23         78888899999888877521       


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                              ..++||||++.+.|+.+.+.+|..  |-+..+.
T Consensus       169 --------~~~lvEe~I~~~~E~sv~~~~~~~--G~~~~~~  199 (352)
T TIGR01161       169 --------RECIVEEFVPFERELSVIVARSAD--GETAFYP  199 (352)
T ss_pred             --------CcEEEEecCCCCeEEEEEEEEcCC--CCEEEEC
Confidence                    258999999988999998887754  3344444

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=98.42  E-value=1.8e-06  Score=84.21  Aligned_cols=130  Identities=18%  Similarity=0.254  Sum_probs=88.6

Q ss_pred             hCCCCCCCcccc--CCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVCL--EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~~--~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      +.|||++++...  ++.+|+.++++++|| ||++|+-.--|  |+         |.++..+.+++.+++++........ 
T Consensus        11 ~~gvp~~pg~~~~~~~~eea~~~a~~iGy-PVliKas~ggG--G~---------gm~iv~~~~eL~~~~~~~~~~s~~~-   77 (211)
T PF02786_consen   11 KLGVPVPPGSTVPISSVEEALEFAEEIGY-PVLIKASAGGG--GR---------GMRIVHNEEELEEAFERAQRESPAA-   77 (211)
T ss_dssp             HTT-BBSSBESSSBSSHHHHHHHHHHH-S-SEEEEETTSST--TT---------SEEEESSHHHHHHHHHHHHHHHHHH-
T ss_pred             HCCCCcCCCCCCCCCCHHHHHHHHHhcCC-ceEEeeccccc--cc---------ccccccchhhhhhhhhhccccCccc-
Confidence            899999999998  999999999999998 99999964433  44         6788889999999988876543210 


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCccccccc-ccCCCeEEEEecCCCCCCCHHHHHHH
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVA-AKTPHLVKTIPIDVHQGITESLAQDI  175 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~-~~~~~~~~~~~l~p~~~l~~~~a~~~  175 (525)
                          .|  ...++||+++.+.+|+-+-+.+|..  |-++.+|   +.  |... .++-|   .+-+.|.+.|+...-++|
T Consensus        78 ----fg--~~~v~iek~i~~~reiEvqvi~D~~--gn~~~~~---~~--e~~~~~hs~d---si~~~P~~~L~~~~~~~l  141 (211)
T PF02786_consen   78 ----FG--DGPVLIEKFIEGAREIEVQVIRDGK--GNVVHLG---ER--ECSEQRHSQD---SIEEAPAQTLSDEERQKL  141 (211)
T ss_dssp             ----HS--TS-EEEEE--SSEEEEEEEEEEETT--SEEEEEE---EE--EEEEEETTEE---EEEEES-SSS-HHHHHHH
T ss_pred             ----cc--cceEEEeeehhhhhhhhhhhhhccc--cceeeee---ee--cccccccccc---ceeEeeccccchHHHHHH
Confidence                01  3679999999988999999999986  4455544   22  2222 23333   345566666888766555


Q ss_pred             HH
Q psy7785         176 AD  177 (525)
Q Consensus       176 ~~  177 (525)
                      .+
T Consensus       142 ~~  143 (211)
T PF02786_consen  142 RE  143 (211)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=98.41  E-value=1.1e-05  Score=85.24  Aligned_cols=91  Identities=18%  Similarity=0.196  Sum_probs=73.5

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeec-cccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQIL-AGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~-~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+|++..+++.+++.++++++|| |+|+|+... .+  ||         ||.+..+.+++.+++..+.        
T Consensus       110 ~~Gip~p~~~~v~s~~~l~~~~~~~g~-P~vlKp~~~g~~--g~---------Gv~~v~~~~el~~a~~~~~--------  169 (372)
T PRK06019        110 KLGIPVAPFAVVDSAEDLEAALADLGL-PAVLKTRRGGYD--GK---------GQWVIRSAEDLEAAWALLG--------  169 (372)
T ss_pred             HCCCCCCCceEeCCHHHHHHHHHHcCC-cEEEEeCCCCcC--CC---------CeEEECCHHHHHHHHHhcC--------
Confidence            799999999999999999999999997 999999532 22  23         7888889999888877651        


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                             ...++||+|++.+.|+.+.+.+|..  |-++.+.
T Consensus       170 -------~~~~ivEe~I~~~~E~sv~~~~~~~--G~~~~~p  201 (372)
T PRK06019        170 -------SVPCILEEFVPFEREVSVIVARGRD--GEVVFYP  201 (372)
T ss_pred             -------CCCEEEEecCCCCeEEEEEEEECCC--CCEEEeC
Confidence                   1358999999988999999888864  4455555

>PRK05586 biotin carboxylase; Validated

Probab=98.37  E-value=1.6e-05  Score=86.08  Aligned_cols=99  Identities=18%  Similarity=0.283  Sum_probs=75.4

Q ss_pred             hCCCCCCCc--cccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDK--VCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~--~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++  ..+.+.+++.++++++|| |||||+..-.+  |+         ||.+..+.+|+++++++.......  
T Consensus       125 ~~GIpvp~~~~~~~~~~~e~~~~~~~igy-PvvvKP~~ggg--g~---------Gv~~v~~~~el~~a~~~~~~~~~~--  190 (447)
T PRK05586        125 KAGVPVVPGSEGEIENEEEALEIAKEIGY-PVMVKASAGGG--GR---------GIRIVRSEEELIKAFNTAKSEAKA--  190 (447)
T ss_pred             HCCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEECCCCC--CC---------eeEEECCHHHHHHHHHHHHHHHHH--
Confidence            799999997  467899999999999997 99999954323  33         788888999999888876542210  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                      .   .+  -..++||+++++.+|+.+.+.+|..  |.++.++
T Consensus       191 ~---~~--~~~vivEe~i~g~~ei~v~v~~d~~--G~~~~~~  225 (447)
T PRK05586        191 A---FG--DDSMYIEKFIENPKHIEFQILGDNY--GNVVHLG  225 (447)
T ss_pred             h---cC--CCeEEEEecCCCCeEEEEEEEECCC--CCEEEEe
Confidence            0   11  1469999999988999999999864  5666665

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=98.35  E-value=2e-06  Score=92.25  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=74.8

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCc-EEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKE-YVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~P-vVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+|++..+++.+++.++++++|| | +|+|+....+|  +         ||.+..+.+++.+++++++...+    
T Consensus       114 ~~gIp~p~~~~~~~~~~~~~~~~~~g~-P~~VvKp~~~~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~----  177 (423)
T TIGR00877       114 RYGIPTAEYEVFTDPEEALSYIQEKGA-PAIVVKADGLAAG--K---------GVIVAKTNEEAIKAVEEILEQKF----  177 (423)
T ss_pred             HCCCCCCCeEEECCHHHHHHHHHhcCC-CeEEEEECCCCCC--C---------CEEEECCHHHHHHHHHHHHHHhc----
Confidence            799999999999999999999999997 9 99999755443  2         78899999999999998875421    


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                          |.....++|||+++ +.|+++.+..|..
T Consensus       178 ----g~~~~~~lvEe~i~-G~E~sv~~~~dg~  204 (423)
T TIGR00877       178 ----GDAGERVVIEEFLD-GEEVSLLAFVDGK  204 (423)
T ss_pred             ----CCCCCeEEEEECcc-CceEEEEEEEcCC
Confidence                12235799999998 4899999998864

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit

Probab=98.34  E-value=5.3e-06  Score=98.62  Aligned_cols=95  Identities=16%  Similarity=0.270  Sum_probs=77.1

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      +.|||+|++..+++.+++.++++++|| |+|||+..-.+|  +         |+.+..+.+|+.+++.+.+...      
T Consensus       137 ~~Gipvp~~~~v~s~~e~~~~~~~igy-PvIVKP~~g~gg--~---------Gv~iv~~~eeL~~~~~~~~~~s------  198 (1050)
T TIGR01369       137 EIGEPVPESEIAHSVEEALAAAKEIGY-PVIVRPAFTLGG--T---------GGGIAYNREELKEIAERALSAS------  198 (1050)
T ss_pred             HCCCCCCCeeecCCHHHHHHHHHHhCC-CeEEECCCCCCC--C---------CeEEECCHHHHHHHHHHHHhcC------
Confidence            799999999999999999999999997 999999744333  3         6778889999998888876421      


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                           ....++||+++++.+|+.+.+.+|..  |.++.+.
T Consensus       199 -----~~~~vlVEe~I~G~~Eiev~v~rd~~--g~~~~~~  231 (1050)
T TIGR01369       199 -----PINQVLVEKSLAGWKEIEYEVMRDSN--DNCITVC  231 (1050)
T ss_pred             -----CCCcEEEEEcccCceEEEEEEEEeCC--CCEEEEe
Confidence                 13579999999988999999999964  4555543

In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=98.32  E-value=2.7e-06  Score=92.14  Aligned_cols=99  Identities=16%  Similarity=0.273  Sum_probs=76.9

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+++.+++.++++++|| |||||+....+|  +         ||.+..+.+|+.++++.......   
T Consensus       125 ~~gip~pp~~~~~~~~~~e~~~~~~~ig~-PvvvKP~~g~gs--~---------Gv~~v~~~~el~~~~~~~~~~~~---  189 (449)
T TIGR00514       125 KAGVPCVPGSDGLVEDEEENVRIAKRIGY-PVIIKATAGGGG--R---------GMRVVREPDELVKSISMTRAEAK---  189 (449)
T ss_pred             HCCCCCCCCcccCcCCHHHHHHHHHHhCC-CEEEEeCCCCCC--C---------ccEEECCHHHHHHHHHHHHHHHH---
Confidence            7999998874  67899999999999997 999999654433  3         78899999999999887754221   


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                          .......++||+|+++++|+.+.+..|..  |.++.++
T Consensus       190 ----~~~~~~~vlvEe~i~g~~e~~v~v~~d~~--g~~~~~~  225 (449)
T TIGR00514       190 ----AAFGNDGVYIEKYIENPRHVEIQVLADKY--GNAIYLG  225 (449)
T ss_pred             ----HhCCCCCEEEEECCCCCeEEEEEEEEcCC--CCEEEEe
Confidence                01113569999999988999999999863  5566665

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=98.32  E-value=5.3e-06  Score=98.88  Aligned_cols=96  Identities=15%  Similarity=0.267  Sum_probs=76.6

Q ss_pred             hhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          18 PVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        18 ~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      +++|||+|++..+++.+|+.++++++|| |||||+..-.+|  +         |+.+..+.+|+.+++++.+...     
T Consensus       137 ~~~Gipvp~~~~v~s~~e~~~~~~~ig~-PvVVKP~~g~gg--~---------Gv~iv~~~eeL~~a~~~~~~~s-----  199 (1066)
T PRK05294        137 KKIGLPVPRSGIAHSMEEALEVAEEIGY-PVIIRPSFTLGG--T---------GGGIAYNEEELEEIVERGLDLS-----  199 (1066)
T ss_pred             HHCCcCCCCeeeeCCHHHHHHHHHHcCC-CeEEEcCCCCCC--C---------CeEEECCHHHHHHHHHHHHhhC-----
Confidence            3799999999999999999999999997 999999643332  3         6778889999999888765321     


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                            ....++||+++++.+|+.+.+.+|...  -++.+.
T Consensus       200 ------~~~~vlvEe~I~G~~Eisv~v~rd~~g--~~~~~~  232 (1066)
T PRK05294        200 ------PVTEVLIEESLLGWKEYEYEVMRDKND--NCIIVC  232 (1066)
T ss_pred             ------CCCeEEEEEcccCceEEEEEEEEcCCC--CEEEEe
Confidence                  135699999999889999999999753  444443

>PLN02735 carbamoyl-phosphate synthase

Probab=98.31  E-value=6.4e-06  Score=97.99  Aligned_cols=88  Identities=17%  Similarity=0.230  Sum_probs=73.9

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcC-CCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLN-FKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg-~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+|++..+++.+++.++++++| | |||||+....+|  +         ||.+..|.+|+++++++.+..+.    
T Consensus       154 ~~GIpvp~~~~v~s~eea~~~~~~iG~y-PvVVKP~~~~GG--~---------Gv~iv~n~eEL~~a~~~a~~~s~----  217 (1102)
T PLN02735        154 KIGLKTPPSGIATTLDECFEIAEDIGEF-PLIIRPAFTLGG--T---------GGGIAYNKEEFETICKAGLAASI----  217 (1102)
T ss_pred             HCCCCCCCeeEeCCHHHHHHHHHHhCCC-CEEEEeCCCCCC--C---------ceEEECCHHHHHHHHHHHHhcCC----
Confidence            79999999999999999999999998 7 999999654443  2         56788899999999988653211    


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                             ...++||+++.+++|+.+.+.+|..
T Consensus       218 -------~~~VLVEe~I~G~kE~ev~Vl~D~~  242 (1102)
T PLN02735        218 -------TSQVLVEKSLLGWKEYELEVMRDLA  242 (1102)
T ss_pred             -------CCeEEEEEecCCCeEEEEEEEEcCC
Confidence                   3579999999988999999999965

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=98.31  E-value=3.8e-06  Score=89.14  Aligned_cols=90  Identities=13%  Similarity=0.158  Sum_probs=73.7

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++++|| |||+|+....+|  +         ||.+..+.+++.++++.+.....     
T Consensus       124 ~~gip~p~~~~~~s~~~l~~~~~~~g~-P~VvKP~~g~~s--~---------Gv~~v~~~~el~~~~~~~~~~~~-----  186 (395)
T PRK09288        124 ELGLPTSPYRFADSLEELRAAVEEIGY-PCVVKPVMSSSG--K---------GQSVVRSPEDIEKAWEYAQEGGR-----  186 (395)
T ss_pred             hCCCCCCCceEECCHHHHHHHHHhcCC-CEEEEeCCCcCC--C---------CeEEECCHHHHHHHHHHHHhhcc-----
Confidence            589999999999999999999999997 999999744332  3         78899999999999988754211     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                         +. ...++||||++.+.|+.+.+.+|..
T Consensus       187 ---~~-~~~~lvEefi~~~~E~sv~~~~~~~  213 (395)
T PRK09288        187 ---GG-AGRVIVEEFIDFDYEITLLTVRAVD  213 (395)
T ss_pred             ---cc-CCCEEEEEecCCCEEEEEEEEEcCC
Confidence               00 2469999999988999999888865

>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=98.30  E-value=1.2e-05  Score=87.13  Aligned_cols=99  Identities=17%  Similarity=0.222  Sum_probs=75.8

Q ss_pred             hCCCCCCCc--cccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDK--VCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~--~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++  ..+++.+++.+++.++|| |||||+....+  |+         ||.+..+.+|+.+++++.......  
T Consensus       125 ~~gIp~pp~~~~~v~~~~~~~~~~~~~g~-PvvvKP~~g~g--s~---------Gv~iv~~~~el~~~~~~~~~~~~~--  190 (451)
T PRK08591        125 KAGVPVVPGSDGPVDDEEEALAIAKEIGY-PVIIKATAGGG--GR---------GMRVVRTEAELEKAFSMARAEAKA--  190 (451)
T ss_pred             HcCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEECCCCC--Cc---------eEEEECCHHHHHHHHHHHHHHHHH--
Confidence            799999987  467899999999999997 99999964433  23         888989999999999887542110  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                      .   .+  ...++||+++++++|+.+.+..|..  |.++.++
T Consensus       191 ~---~~--~~~vlvEe~i~g~~e~~v~v~~d~~--g~~~~~~  225 (451)
T PRK08591        191 A---FG--NPGVYMEKYLENPRHIEIQVLADGH--GNAIHLG  225 (451)
T ss_pred             h---cC--CCCEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe
Confidence            0   11  2469999999888899999999875  4566554

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=98.29  E-value=2.8e-05  Score=86.76  Aligned_cols=93  Identities=14%  Similarity=0.201  Sum_probs=73.5

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ..|||+|++..+++.+++.++++++|| |+|||+.... +  |+         |+.+..+.+++.++++.+...      
T Consensus       131 ~~GIptp~~~~v~~~~el~~~~~~ig~-P~VvKP~~ggs~--g~---------Gv~~v~~~~eL~~a~~~~~~~------  192 (577)
T PLN02948        131 KHGIPLPEFMEIDDLESAEKAGDLFGY-PLMLKSRRLAYD--GR---------GNAVAKTEEDLSSAVAALGGF------  192 (577)
T ss_pred             HCCcCCCCeEEeCCHHHHHHHHHhcCC-cEEEEeCCCCCC--CC---------CeEEECCHHHHHHHHHHhhCC------
Confidence            799999999999999999999999997 9999995331 2  23         677888999999888876321      


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                             -..++||+|++..+|+.+.+.+|..  |.+..+.
T Consensus       193 -------~~~vlvEefI~~~~EisV~v~r~~~--G~i~~~p  224 (577)
T PLN02948        193 -------ERGLYAEKWAPFVKELAVMVARSRD--GSTRCYP  224 (577)
T ss_pred             -------CCcEEEEecCCCCeEEEEEEEECCC--CCEEEec
Confidence                   1358999999988999999998854  4444443

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=98.22  E-value=0.0002  Score=77.67  Aligned_cols=212  Identities=19%  Similarity=0.298  Sum_probs=131.6

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNA  380 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a  380 (525)
                      .|+|++||-||+.+....|.+...|+-..-.+-++++++- .+.+.++.+.+||++++|++.+- +..+....    .++
T Consensus       150 ~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d~-~~~d~l~~l~~D~~t~~I~ly~E-~~~~~~~f----~~a  223 (447)
T TIGR02717       150 KGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADI-DESDLLEYLADDPDTKVILLYLE-GIKDGRKF----LKT  223 (447)
T ss_pred             CCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhhC-CHHHHHHHHhhCCCCCEEEEEec-CCCCHHHH----HHH
Confidence            5789999999999999999999999876666666655432 37799999999999999987643 23333333    333


Q ss_pred             HHhcCCCCcEEEEeCCcch----------------HH-HHHHHhhCCCCccccCCHHHHHHHHHHhhccc----------
Q psy7785         381 CKSFKLSIPLVVRLEGTNV----------------QE-GKRILDESKLPLIFASDLDEAASLVNACKSFK----------  433 (525)
Q Consensus       381 ~~~~~~~kPivv~~~g~~~----------------~~-~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~----------  433 (525)
                      ++....+|||++...|...                .. ....|++.|+...  +++++-...+..+....          
T Consensus       224 a~~a~~~KPVv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~--~~~~el~~~~~~l~~~~~~~g~rvaiv  301 (447)
T TIGR02717       224 AREISKKKPIVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA--DSIEELFDLARLLSNQPLPKGNRVAII  301 (447)
T ss_pred             HHHHcCCCCEEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe--CCHHHHHHHHHHHhcCCCCCCCeEEEE
Confidence            3332237999987666311                11 1347889999988  88888777766543210          


Q ss_pred             ------------------CCCCeE---------------------EEeCC-CCHH---HHHH-HHHHCCCCeEE--Ec--
Q psy7785         434 ------------------LSIPLV---------------------VRLEG-TNVQ---EGKR-ILDESKLPLIF--AS--  465 (525)
Q Consensus       434 ------------------~~~P~~---------------------~~l~g-~~e~---eak~-LL~ayGIpv~l--A~--  465 (525)
                                        ...|..                     ..+.+ .+.+   .+.+ +++.-++...+  ..  
T Consensus       302 s~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~  381 (447)
T TIGR02717       302 TNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPT  381 (447)
T ss_pred             ECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCC
Confidence                              011100                     00101 1111   2333 34333555411  11  


Q ss_pred             ---ChhHHH-HHHHHhhhcCCCCcEEEEEec-CChHHHHHhhhhCCCCceeccCHHHHHHHhH
Q psy7785         466 ---DLDEAA-SLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLPLIFASDLDEAANWFI  523 (525)
Q Consensus       466 ---s~deAv-~~~~aa~~~~~G~PVVlKi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (525)
                         ..++.. ..++..++. .+-||+.-..| +..++.+++|.+.|+++  ++++++|+.+..
T Consensus       382 ~~~~~~~~a~~l~~~~~~~-~~KPvv~~~~gg~~~~~~~~~L~~~Gip~--f~~p~~A~~al~  441 (447)
T TIGR02717       382 AMTDPEEVAKGIIEGAKKS-NEKPVVAGFMGGKSVDPAKRILEENGIPN--YTFPERAVKALS  441 (447)
T ss_pred             ccCCHHHHHHHHHHHHHhc-CCCcEEEEecCCccHHHHHHHHHhCCCCc--cCCHHHHHHHHH
Confidence               112221 222233331 15699887775 67889999999988777  999999998753

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A

Probab=98.22  E-value=1.3e-06  Score=85.75  Aligned_cols=46  Identities=20%  Similarity=0.447  Sum_probs=35.7

Q ss_pred             CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCCh
Q psy7785         445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNV  495 (525)
Q Consensus       445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~  495 (525)
                      +++.|+++||++||||+   .+++|.+||.+   +|+++  |||||||++|+..
T Consensus        10 L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~---~a~~i--g~PvvlKi~sp~i   58 (222)
T PF13549_consen   10 LTEAEAKELLAAYGIPVPPTRLVTSAEEAVA---AAEEI--GFPVVLKIVSPDI   58 (222)
T ss_dssp             E-HHHHHHHHHTTT------EEESSHHHHHH---HHHHH---SSEEEEEE-TT-
T ss_pred             cCHHHHHHHHHHcCcCCCCeeEeCCHHHHHH---HHHHh--CCCEEEEEecCCC
Confidence            47899999999999999   89999999999   57775  9999999999874

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit

Probab=98.19  E-value=1e-05  Score=96.23  Aligned_cols=87  Identities=13%  Similarity=0.189  Sum_probs=73.3

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      +.|||+|++..+++.+|+.++++++|| |||+|+....+|  +         ||.+..+.+++++++++......     
T Consensus       679 ~~GIp~P~~~~v~s~ee~~~~~~~igy-PvIVKP~~~~Gg--~---------gv~iv~~~eeL~~~l~~a~~~s~-----  741 (1050)
T TIGR01369       679 ELGIPQPKWKTATSVEEAVEFASEIGY-PVLVRPSYVLGG--R---------AMEIVYNEEELRRYLEEAVEVSP-----  741 (1050)
T ss_pred             HCCcCCCCeEEECCHHHHHHHHHhcCC-CEEEEECCCCCC--C---------CeEEECCHHHHHHHHHHHHHhCC-----
Confidence            799999999999999999999999997 999999644443  3         78888899999999998754211     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                            ...++||+|++++.|+.+.+..|.
T Consensus       742 ------~~~vlVeefI~~G~E~~Vd~l~d~  765 (1050)
T TIGR01369       742 ------EHPVLIDKYLEDAVEVDVDAVSDG  765 (1050)
T ss_pred             ------CCCEEEeecCCCCeEEEEEEEEeC
Confidence                  245999999998999999999985

In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.

>PLN02735 carbamoyl-phosphate synthase

Probab=98.17  E-value=2e-05  Score=93.86  Aligned_cols=95  Identities=18%  Similarity=0.199  Sum_probs=76.8

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+|+.++++++|| ||+||+....+|  +         |+.+..+.+|+.+++++....       
T Consensus       712 ~~GIp~p~~~~v~s~eea~~~a~~iGy-PvvVKP~~g~gG--~---------G~~iV~~~eeL~~al~~a~~~-------  772 (1102)
T PLN02735        712 ELKIEQPKGGIARSEADALAIAKRIGY-PVVVRPSYVLGG--R---------AMEIVYSDDKLKTYLETAVEV-------  772 (1102)
T ss_pred             HcCCCCCCeeEeCCHHHHHHHHHhcCC-CeEEEeCCCCCC--C---------cEEEECCHHHHHHHHHHHHHh-------
Confidence            799999999999999999999999998 999999654333  3         788889999999998887532       


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                        .+  ...++||+++++++|+.+.+.+|..  |-+++++
T Consensus       773 --~~--~~~vlVEefI~~g~Ei~V~vl~D~~--G~vv~~~  806 (1102)
T PLN02735        773 --DP--ERPVLVDKYLSDATEIDVDALADSE--GNVVIGG  806 (1102)
T ss_pred             --cC--CCCEEEEEecCCcEEEEEEEEECCC--CCEEEec
Confidence              01  1359999999889999999999965  3445443

>PRK07178 pyruvate carboxylase subunit A; Validated

Probab=98.17  E-value=3e-05  Score=84.57  Aligned_cols=99  Identities=20%  Similarity=0.242  Sum_probs=74.8

Q ss_pred             hCCCCCCCccc--cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVC--LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~--~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++..  +++.+++.++++++|| |||||+..-.+  |+         ||.+..+.+|+.+++++.......  
T Consensus       124 ~~GIp~pp~~~~~~~~~~e~~~~~~~igy-PvvvKp~~ggG--g~---------Gv~~v~~~~eL~~a~~~~~~~~~~--  189 (472)
T PRK07178        124 KAGVPVTPGSEGNLADLDEALAEAERIGY-PVMLKATSGGG--GR---------GIRRCNSREELEQNFPRVISEATK--  189 (472)
T ss_pred             HCCCCCCCCcCcCCCCHHHHHHHHHHcCC-cEEEEeCCCCC--CC---------CceEeCCHHHHHHHHHHHHHHHHH--
Confidence            79999988764  7899999999999997 99999954433  33         788889999999988876543220  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                      .   .+  ...++||++++.++|+.+.+..|..  |-++.+.
T Consensus       190 ~---~~--~~~v~iE~~i~~~~eiev~v~~d~~--G~~v~~~  224 (472)
T PRK07178        190 A---FG--SAEVFLEKCIVNPKHIEVQILADSH--GNVVHLF  224 (472)
T ss_pred             h---cC--CCCEEEEEcCCCCeEEEEEEEEECC--CCEEEEE
Confidence            0   11  2468999999889999999999865  3444443

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=98.15  E-value=1.1e-05  Score=85.31  Aligned_cols=89  Identities=13%  Similarity=0.187  Sum_probs=71.0

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      +.|||+|++..+++.+++..+++++|| |+|+|+-...+|  +         ||.+..+.+++.++++.+.....     
T Consensus       111 ~~gip~p~~~~~~~~~~~~~~~~~~g~-P~VvKP~~g~~s--~---------gv~~v~~~~el~~~~~~~~~~~~-----  173 (380)
T TIGR01142       111 ELGLPTSRYMFADSLDELREAVEKIGY-PCVVKPVMSSSG--K---------GQSVVRGPEDIEKAWEYAQEGAR-----  173 (380)
T ss_pred             HCCCCCCCceEeCCHHHHHHHHHHcCC-CEEEEECCCcCC--C---------CeEEECCHHHHHHHHHHHHhhcc-----
Confidence            689999999999999999999999997 999999633332  2         78899999999999888753211     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                         .. -..++||||++++.|+.+.+.++.
T Consensus       174 ---~~-~~~~ivEe~i~~~~E~sv~~~~~~  199 (380)
T TIGR01142       174 ---GG-AGRVIVEEFIDFDYEITLLTVRHV  199 (380)
T ss_pred             ---CC-CCCEEEEEecCCCEEEEEEEEEcC
Confidence               00 246999999997889998887654

This enzyme is an alternative to PurN (TIGR00639)

>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional

Probab=98.14  E-value=9.2e-06  Score=88.52  Aligned_cols=92  Identities=15%  Similarity=0.189  Sum_probs=72.7

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+++.+++.++++++|| |||||+..-.+  |+         ||.+..+.+++.++++........  
T Consensus       128 ~~GIp~~p~~~~~v~~~~e~~~~~~~igy-PvvvKp~~ggg--g~---------Gv~~v~~~~eL~~a~~~~~~~~~~--  193 (467)
T PRK12833        128 RAGVPTVPGSDGVVASLDAALEVAARIGY-PLMIKAAAGGG--GR---------GIRVAHDAAQLAAELPLAQREAQA--  193 (467)
T ss_pred             HcCCCCCCCcCcCcCCHHHHHHHHHHhCC-CEEEEECCCCC--CC---------eEEEECCHHHHHHHHHHHHHHHHH--
Confidence            7999999885  78999999999999997 99999964433  34         888999999999988876432110  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                      .   .+  ...++||++++.++|+.+.+..|..
T Consensus       194 ~---~~--~~~vlvEefi~~~~ei~v~v~~dg~  221 (467)
T PRK12833        194 A---FG--DGGVYLERFIARARHIEVQILGDGE  221 (467)
T ss_pred             h---cC--CCcEEEEecCCCCEEEEEEEEeCCC
Confidence            0   11  2469999999888999999999875

>PRK08654 pyruvate carboxylase subunit A; Validated

Probab=98.14  E-value=1.3e-05  Score=87.93  Aligned_cols=99  Identities=20%  Similarity=0.312  Sum_probs=76.5

Q ss_pred             hCCCCCCCccc--cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVC--LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~--~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++..  +++.+++.++++++|| ||+||+..-.|  ||         ||++..+.+++.++++........  
T Consensus       125 ~~GVpv~p~~~~~v~~~~e~~~~a~~igy-PvvIKp~~GgG--G~---------Gv~iv~~~~eL~~a~~~~~~~a~~--  190 (499)
T PRK08654        125 KAGVPVLPGTEEGIEDIEEAKEIAEEIGY-PVIIKASAGGG--GI---------GMRVVYSEEELEDAIESTQSIAQS--  190 (499)
T ss_pred             HcCcCCCCCcCcCCCCHHHHHHHHHHhCC-CEEEEeCCCCC--CC---------eEEEeCCHHHHHHHHHHHHHHHHH--
Confidence            79999988765  6899999999999998 99999954333  34         899999999999988876532110  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                      .   .+  -..++||+++++.+|+.+.+..|..  |.++.++
T Consensus       191 ~---f~--~~~v~vE~~I~~~r~ieVqvl~d~~--G~vv~l~  225 (499)
T PRK08654        191 A---FG--DSTVFIEKYLEKPRHIEIQILADKH--GNVIHLG  225 (499)
T ss_pred             h---CC--CCeEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe
Confidence            0   11  2469999999988999999999964  5666655

>COG0439 AccC Biotin carboxylase [Lipid metabolism]

Probab=98.12  E-value=1.5e-05  Score=85.70  Aligned_cols=99  Identities=19%  Similarity=0.277  Sum_probs=75.9

Q ss_pred             hCCCCCCCccc--cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVC--LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~--~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      +.|||++++.-  ..+.+|+.++++++|| ||+||+-.-.||  +         |++++.+.+++.+++..+.+....  
T Consensus       125 ~aGVP~vpgs~~~~~~~ee~~~~a~~iGy-PVivKa~~GgGg--~---------G~r~v~~~~el~~a~~~~~~ea~~--  190 (449)
T COG0439         125 KAGVPVVPGSDGAVADNEEALAIAEEIGY-PVIVKAAAGGGG--R---------GMRVVRNEEELEAAFEAARGEAEA--  190 (449)
T ss_pred             HcCCCcCCCCCCCcCCHHHHHHHHHHcCC-CEEEEECCCCCc--c---------cEEEECCHHHHHHHHHHHHHHHHH--
Confidence            89999999872  4667899999999997 999999755444  3         899999999999999999875331  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                      .   -|  -..|++|+++...+=.-+.+.-|..  |.+|=.+
T Consensus       191 ~---fg--~~~v~iEk~i~~~rhievqv~gD~~--g~~i~l~  225 (449)
T COG0439         191 A---FG--NPRVYLEKFIEGPRHIEVQVLGDGH--GNVIHLG  225 (449)
T ss_pred             h---cC--CCcEEeeeeccCCceEEEEEEEcCc--ccEEEEE
Confidence            1   12  2349999999877666777777765  3555544

>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=98.09  E-value=2.8e-05  Score=81.24  Aligned_cols=104  Identities=15%  Similarity=0.210  Sum_probs=82.2

Q ss_pred             HhhhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccc
Q psy7785          14 YLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL   93 (525)
Q Consensus        14 ~~~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~   93 (525)
                      .+.+.+.|+|+| +.++++.+++.+.++.+|| ||++|+-.-.||  .         |+.+..|.+|+.+.....+... 
T Consensus       121 ke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~-PvIVrP~~~lGG--~---------G~~i~~n~eel~~~~~~~l~~s-  186 (400)
T COG0458         121 KEAMREIGIPVP-SRIAHSVEEADEIADEIGY-PVIVKPSFGLGG--S---------GGGIAYNEEELEEIIEEGLRAS-  186 (400)
T ss_pred             HHHHHHcCCCCC-ccccccHHHHhhhHhhcCC-CEEEecCcCCCC--C---------ceeEEeCHHHHHHHHHhccccC-
Confidence            344448999999 7799999999999999997 999999644443  1         4456778899998888876532 


Q ss_pred             ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCc
Q psy7785          94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGT  143 (525)
Q Consensus        94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv  143 (525)
                                .++.+|+|+++.++.|+.+.+.+|..- -+++++. .+-.
T Consensus       187 ----------~~~~vl~eesi~G~ke~e~ev~rd~~~-n~ivvc~-men~  224 (400)
T COG0458         187 ----------PVEEVLIEESIIGWKEFEYEVVRDGKD-NCIVVCN-MENL  224 (400)
T ss_pred             ----------ccccceeeeeecCceEEEEEEEEeCCC-CEEEEEe-CCcc
Confidence                      257899999999999999999999987 4666666 4433

>PRK14569 D-alanyl-alanine synthetase A; Provisional

Probab=98.07  E-value=0.00015  Score=74.32  Aligned_cols=82  Identities=17%  Similarity=0.225  Sum_probs=61.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      .+|||||++.++++..   ...+.++| |+|||+-.-  |-++         ||.+..+.+++.+++++...        
T Consensus       108 ~~gIptp~~~~~~~~~---~~~~~~~~-P~vVKP~~g--gss~---------Gv~~v~~~~eL~~a~~~~~~--------  164 (296)
T PRK14569        108 HHRMPTPMAKFLTDKL---VAEDEISF-PVAVKPSSG--GSSI---------ATFKVKSIQELKHAYEEASK--------  164 (296)
T ss_pred             HCCCCCCCeEEEchhh---hhHhhcCC-CEEEEeCCC--CCCc---------CeEEcCCHHHHHHHHHHHHh--------
Confidence            7999999998876432   24577897 999999532  2122         68888899999988877521        


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                            ...++||++++ ++|+.+++..|...
T Consensus       165 ------~~~~lvEefI~-G~E~tv~vl~~~~~  189 (296)
T PRK14569        165 ------YGEVMIEQWVT-GKEITVAIVNDEVY  189 (296)
T ss_pred             ------cCCEEEEcccc-cEEEEEEEECCcCc
Confidence                  12589999997 69999999877654

>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A

Probab=98.02  E-value=2.5e-05  Score=73.12  Aligned_cols=95  Identities=19%  Similarity=0.260  Sum_probs=67.1

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.+++..+++ |+|||+..-.++           -||.+..+.+++.+.++++.....     
T Consensus        14 ~~gv~~P~~~~~~~~~~~~~~~~~~~~-p~vvKp~~g~gs-----------~gv~~~~~~~~l~~~~~~~~~~~~-----   76 (184)
T PF13535_consen   14 KAGVPVPKTRIVDSEEELRAFAEDLGF-PFVVKPVDGSGS-----------RGVFIVHSPEELEAALAEIREDSP-----   76 (184)
T ss_dssp             HHTS----EEEECSHHHHHHHHHHSSS-SEEEEESS-STT-----------TT-EEESSHHHHHHHHHHHHHHHS-----
T ss_pred             HcCcCCCCEEEECCHHHHHHHHHHcCC-CEEEEcCccccC-----------CCEEEeCCHHHHHHHHHHHHHhcc-----
Confidence            699999999999999999999999997 999999755433           278888899999999998865311     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                          .....++||++++ +.|+.+-+..+  . |.++.++
T Consensus        77 ----~~~~~~ivqe~i~-g~e~~~~~~~~--~-G~~~~~~  108 (184)
T PF13535_consen   77 ----LGNGPVIVQEYIP-GDEYSVDGVVD--D-GEVVFAG  108 (184)
T ss_dssp             -----HSSSEEEEE----SEEEEEEEEEE--T-TEEEEEE
T ss_pred             ----cCCccEEEEEeee-eeeEEEEEEEE--c-ceEEEEE
Confidence                1135799999999 68999888877  2 4554444

>TIGR02712 urea_carbox urea carboxylase

Probab=98.01  E-value=2.5e-05  Score=93.66  Aligned_cols=99  Identities=18%  Similarity=0.233  Sum_probs=76.9

Q ss_pred             hCCCCCCC-ccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTD-KVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~-~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+++ +.++++.+|+.++++++|| |||||+....+|  +         ||.+..+.+|+.++++++..... . .
T Consensus       124 ~~GVPt~p~~~lv~s~dea~~~a~~igy-PvVVKP~~ggGG--~---------GV~iv~~~eEL~~a~~~~~~~~~-~-~  189 (1201)
T TIGR02712       124 AAGVPLLPGTGLLSSLDEALEAAKEIGY-PVMLKSTAGGGG--I---------GMQKCDSAAELAEAFETVKRLGE-S-F  189 (1201)
T ss_pred             HCCCCCCCceeecCCHHHHHHHHHhcCC-eEEEEECCCCCC--C---------CEEEECCHHHHHHHHHHHHHHHH-H-h
Confidence            79999866 6678999999999999997 999999755433  4         78899999999988888753211 0 0


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                         .+  ..+++||+|+++++|+.+.+..|..  |.++.++
T Consensus       190 ---f~--~~~vlVEefI~g~~eveV~v~~Dg~--g~vv~lg  223 (1201)
T TIGR02712       190 ---FG--DAGVFLERFVENARHVEVQIFGDGK--GKVVALG  223 (1201)
T ss_pred             ---cC--CCcEEEEecCCCCEEEEEEEEECCC--CeEEEee
Confidence               11  2469999999988999999999975  4566664

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=98.01  E-value=4.8e-05  Score=90.71  Aligned_cols=85  Identities=12%  Similarity=0.202  Sum_probs=70.6

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+|+.++++++|| |||+|+....+|  +         ||.+..+.+++++++++...  .     
T Consensus       680 ~~GIp~P~~~~~~s~ee~~~~~~~igy-PvVVKP~~~~Gg--~---------gv~iv~~~eeL~~~l~~~~s--~-----  740 (1068)
T PRK12815        680 ELGLPHVPGLTATDEEEAFAFAKRIGY-PVLIRPSYVIGG--Q---------GMAVVYDEPALEAYLAENAS--Q-----  740 (1068)
T ss_pred             HcCcCCCCeEEeCCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHhhc--C-----
Confidence            799999999999999999999999997 999999644443  2         78888899999988887611  0     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                            ...++||++++ +.|+.+.+..|..
T Consensus       741 ------~~~vlIeefI~-G~E~~Vd~i~dg~  764 (1068)
T PRK12815        741 ------LYPILIDQFID-GKEYEVDAISDGE  764 (1068)
T ss_pred             ------CCCEEEEEeec-CceEEEEEEEcCC
Confidence                  24599999996 6799999999864

>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase

Probab=98.01  E-value=0.00024  Score=73.02  Aligned_cols=85  Identities=16%  Similarity=0.281  Sum_probs=63.8

Q ss_pred             hCCCCCCCccccC-CHHHH-----HHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccc
Q psy7785          19 VSTVHSTDKVCLE-DARTA-----TNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK   92 (525)
Q Consensus        19 ~~GIpvp~~~~~~-~~eea-----~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~   92 (525)
                      ++|||+|++.+++ +.++.     ..+...++| |+|+|+....++  +         ||.+..+.+++.+++++.... 
T Consensus       115 ~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~-P~vvKP~~~~~s--~---------Gv~~v~~~~el~~~~~~~~~~-  181 (315)
T TIGR01205       115 ALGLPTPDYIVLTQNRASADELECEQVAEPLGF-PVIVKPAREGSS--V---------GVSKVKSEEELQAALDEAFEY-  181 (315)
T ss_pred             HCCCCCCCEEEEecccccchhhhHHHHHHhcCC-CEEEEeCCCCCc--c---------CEEEECCHHHHHHHHHHHHhc-
Confidence            7999999999887 54432     234567897 999999644322  2         688888999999888876421 


Q ss_pred             cccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          93 LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        93 ~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                                  ...++||++++ ++|+.+++..+..
T Consensus       182 ------------~~~~lvEe~i~-G~e~~v~vi~~~~  205 (315)
T TIGR01205       182 ------------DEEVLVEQFIK-GRELEVSILGNEE  205 (315)
T ss_pred             ------------CCcEEEEcCCC-CEEEEEEEECCCC
Confidence                        13589999997 8999999998543

but a number of antibiotic resistance proteins score above the trusted cutoff of this model.

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=98.00  E-value=6.3e-05  Score=68.46  Aligned_cols=117  Identities=18%  Similarity=0.254  Sum_probs=69.9

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC  381 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~  381 (525)
                      |+|++||.||+.+....|.+...|+-..-.+-++.+++- .+.++++.+.+||++++|++.+- ++.+.....    +++
T Consensus         2 G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv-~~~d~l~~~~~D~~t~~I~ly~E-~~~d~~~f~----~~~   75 (138)
T PF13607_consen    2 GGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADV-DFADLLEYLAEDPDTRVIVLYLE-GIGDGRRFL----EAA   75 (138)
T ss_dssp             -SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS--HHHHHHHHCT-SS--EEEEEES---S-HHHHH----HHH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccC-CHHHHHHHHhcCCCCCEEEEEcc-CCCCHHHHH----HHH
Confidence            689999999999999999999999854444444444332 37899999999999998887543 233344333    343


Q ss_pred             HhcCCCCcEEEEeCCc-----------------chHHHHHHHhhCCCCccccCCHHHHHHHH
Q psy7785         382 KSFKLSIPLVVRLEGT-----------------NVQEGKRILDESKLPLIFASDLDEAASLV  426 (525)
Q Consensus       382 ~~~~~~kPivv~~~g~-----------------~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al  426 (525)
                      ++....|||++...|.                 ........|++.|+-..  +++++-+..+
T Consensus        76 ~~a~~~KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~v--~~~~el~~~~  135 (138)
T PF13607_consen   76 RRAARRKPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVRV--DDLDELLDAA  135 (138)
T ss_dssp             HHHCCCS-EEEEE---------------------HHHHHHHHHHCTEEEE--SSHHHHHHHH
T ss_pred             HHHhcCCCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceEE--CCHHHHHHHH
Confidence            3322349999876552                 11222457788888766  8877766544

>PRK08462 biotin carboxylase; Validated

Probab=98.00  E-value=3.7e-05  Score=83.21  Aligned_cols=99  Identities=20%  Similarity=0.286  Sum_probs=74.2

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      +.|||+|++.  .+.+.+++..+++++|| |||||+..-.+|  +         ||.+..+.+++.+++.+.......  
T Consensus       127 ~~gIp~pp~~~~~~~~~~~~~~~~~~~g~-PvvvKP~~g~gs--~---------Gv~~v~~~~eL~~~~~~~~~~~~~--  192 (445)
T PRK08462        127 RAGVPVIPGSDGALKSYEEAKKIAKEIGY-PVILKAAAGGGG--R---------GMRVVEDESDLENLYLAAESEALS--  192 (445)
T ss_pred             HCCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEeCCCCCC--C---------CeEEECCHHHHHHHHHHHHHHHHh--
Confidence            7999999864  57899999999999997 999999644433  3         788888999999888765432110  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                      .   .+  -..++||+++++++|+.+.+..|..  |-++.+|
T Consensus       193 ~---~~--~~~vlvEe~i~g~~e~~v~v~~~~~--g~~~~~g  227 (445)
T PRK08462        193 A---FG--DGTMYMEKFINNPRHIEVQILGDKH--GNVIHVG  227 (445)
T ss_pred             c---cC--CCcEEEeccCCCCeEEEEEEEECCC--CCEEEEE
Confidence            0   11  1359999999888999999988853  4566655

>KOG1254|consensus

Probab=97.99  E-value=7.8e-06  Score=86.10  Aligned_cols=289  Identities=17%  Similarity=0.083  Sum_probs=184.6

Q ss_pred             cEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCC------ceeE
Q psy7785          47 EYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNI------TRET  120 (525)
Q Consensus        47 PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~------~~E~  120 (525)
                      ..|.|.+.+.+.|+|       .|-|.++.+-.+..+..+.+.+....  -.+.-|. ..-+.||+++++      -.|.
T Consensus        81 rsv~k~~m~~~k~~k-------i~lvAiiAegvpe~~~~kl~~~a~~k--~~~iiGP-aTvggVePg~fkignt~g~~dn  150 (600)
T KOG1254|consen   81 RSVAKPDMLALKRGK-------IGLVAIIAEGVPEADTRKLRAGAEVK--GVGIIGP-ATVGGVEPGVFKIGNTGGMMDN  150 (600)
T ss_pred             hhhhcchHHHhhcCc-------ceEEEEEecCCcHHHHHHHHhccccc--cceEEee-eeeccccCCccccCCCCcchhh
Confidence            468899888888888       78999998766666666666554321  1111232 567889999976      5899


Q ss_pred             EEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHh
Q psy7785         121 YFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLF  200 (525)
Q Consensus       121 ~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~  200 (525)
                      |+.+..+|.  |.++.||..||+++|+.....    ++.- -|..++      .. ..=+..+.          .++.- 
T Consensus       151 il~~klyR~--Gsv~~vS~sGGmsnE~nn~is----rtt~-g~~egi------ai-ggd~~pgS----------Tl~dh-  205 (600)
T KOG1254|consen  151 ILNSKLYRP--GSVIYVSRSGGMSNELNNIIS----RTTD-GPYEGI------AI-GGDRYPGS----------TLIDH-  205 (600)
T ss_pred             hhhhcccCC--ccEEEEecCCCcchhhhhhhh----heec-cceeee------ec-cCCCccCc----------hHhhh-
Confidence            999999986  789999999999999987432    2221 111110      00 00000000          11110 


Q ss_pred             hhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeee-------ceeEecCCc---EEEeeeEEEecCCchhc
Q psy7785         201 LSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEIN-------PLVETDERE---VISVDAKINFDDNAEFR  270 (525)
Q Consensus       201 r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiN-------Pl~v~~~g~---~~alDa~i~ld~~a~fr  270 (525)
                                   .|.-..+.+.++++.|+.++-+++-+.+|+|       ||++-.-|.   .+-+|....+++++.|.
T Consensus       206 -------------i~r~q~~~~vk~Iv~Lgevgg~~ey~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~  272 (600)
T KOG1254|consen  206 -------------IPREQHDPLVKFIVVLGEVGGDEEYTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFK  272 (600)
T ss_pred             -------------hhhhhccChhheEEeehhhcccceeehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhc
Confidence                         1333556788999999999999999999999       998876552   46688888888776665


Q ss_pred             ccccccc-----C----CCC---------------------------C---CChHhhhhhccCCceeccCCcEEEEecch
Q psy7785         271 QKNIFSQ-----N----EVS---------------------------E---SDPREVDASKYNLNYVGMDGNIGCLVNGA  311 (525)
Q Consensus       271 q~~i~~~-----~----~~~---------------------------~---~~~~E~~a~~~~l~~~~~~~rIaIitnsG  311 (525)
                      .-.-+-+     +    +++                           |   ....|..+.+..|+.++..+|++....+|
T Consensus       273 ~~eka~akn~al~~ag~~vpesf~~l~~~i~~~~e~lv~~Grvvp~~Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~  352 (600)
T KOG1254|consen  273 NGEKAAAKNQALRDAGATVPESFDALGADIQETYEFLVPFGRVVPKTEVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGG  352 (600)
T ss_pred             chhhhhhcchhhhhccccCccchhhhhhhhccchhcccccceecCcccCCCCCCChhhhhHhhhccccCCceEEEEecCC
Confidence            4321110     0    000                           0   01233334455677777788998877777


Q ss_pred             -hHHHHHHHHHHHcCCC--CCCeeeecCCCCHHH---H-HHHHHHHh-cCCCccEEEEEecccc---cChHHHHHHHHHH
Q psy7785         312 -GLAMATMDIIKLHGGE--PANFLDVGGGVNEES---I-IQAFRIIS-SDSNVKCILVNVFGGI---VNCATIAKGLVNA  380 (525)
Q Consensus       312 -G~gvlaaD~~~~~Gl~--~aNPlDl~g~a~~~~---~-~~al~~ll-~dp~vd~vlv~~~~~~---~~~~~ia~~i~~a  380 (525)
                       |..+..+|.....|.+  .+|.-.+++-+....   | ...++.++ -+|+-+.-+..+-+++   ....++..+|++.
T Consensus       353 rGaeviYA~~p~~~~~a~elG~gg~~Sllw~~~~lp~Ya~kfie~~~m~~aDhgp~Vsga~ntI~~~ra~kdl~sslv~g  432 (600)
T KOG1254|consen  353 RGAEVIYADVPISLGYASELGNGGVYSLLWFQRRLPQYARKFIEICTMLTADHGPAVSGAGNTIANFRAGKDLFSSLVRG  432 (600)
T ss_pred             CCceeeecCchhhhhhHhhccccceEccccccccchHHHHHHHHHHhhccCCCCceeEeccCceEEeccHHHHHHHHHHH
Confidence             9999999999998884  688888888877654   3 45566655 3444444333333333   2335566677776


Q ss_pred             HHh
Q psy7785         381 CKS  383 (525)
Q Consensus       381 ~~~  383 (525)
                      +.+
T Consensus       433 Llt  435 (600)
T KOG1254|consen  433 LLT  435 (600)
T ss_pred             Hhh
Confidence            554

>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=97.98  E-value=3.6e-05  Score=83.20  Aligned_cols=99  Identities=20%  Similarity=0.304  Sum_probs=74.3

Q ss_pred             hCCCCCCCc--cccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDK--VCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~--~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++  ..+++.+++.++++.+|| |+|||+....+|  +         ||.+..+.+|+.+++++......   
T Consensus       125 ~~gIp~p~~~~~~~~~~~e~~~~~~~~~~-P~VvKP~~g~gs--~---------Gv~iv~~~~el~~a~~~~~~~~~---  189 (450)
T PRK06111        125 AAGVPVVPGITTNLEDAEEAIAIARQIGY-PVMLKASAGGGG--I---------GMQLVETEQELTKAFESNKKRAA---  189 (450)
T ss_pred             HCCCCCCCCcCcCcCCHHHHHHHHHHhCC-CEEEEeCCCCCC--c---------eEEEECCHHHHHHHHHHHHHHHH---
Confidence            799999986  456899999999999997 999999755443  3         88899999999999888643211   


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                      ..  .+  -..++||+++++.+|+.+.+..|..  |.++.++
T Consensus       190 ~~--~~--~~~~lvEe~i~g~~e~~v~v~~~~~--g~~~~~~  225 (450)
T PRK06111        190 NF--FG--NGEMYIEKYIEDPRHIEIQLLADTH--GNTVYLW  225 (450)
T ss_pred             Hh--cC--CCcEEEEcccCCCcEEEEEEEEcCC--CCEEEEE
Confidence            00  01  1359999999987898898888864  4455443

>PRK05784 phosphoribosylamine--glycine ligase; Provisional

Probab=97.96  E-value=3.9e-05  Score=83.86  Aligned_cols=91  Identities=16%  Similarity=0.130  Sum_probs=67.6

Q ss_pred             hCCCCCC-CccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcc--------cHH-HHHHHH
Q psy7785          19 VSTVHST-DKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQ--------DIP-PILEKM   88 (525)
Q Consensus        19 ~~GIpvp-~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~e--------ea~-~a~~~l   88 (525)
                      ++|||+| ++..+++.+++.++++.+ + |||||+....+|  |         ||.+..+.+        ++. ++++++
T Consensus       119 ~~gIpt~~~~~~~~~~~ea~~~~~~~-~-PvVVKP~~~agg--k---------GV~iv~~~~e~~~~~~~ea~~~a~~~~  185 (486)
T PRK05784        119 KYSIPGRLRYKVFYDVEEAAKFIEYG-G-SVAIKPARQAGG--K---------GVKVIADLQAYLSQEKREALTKSVNDI  185 (486)
T ss_pred             HcCcCCCccceEeCCHHHHHHHHhhc-C-CEEEeeCCCCCC--C---------CEEEECChhHhcchhHHHHHHHHHHHH
Confidence            7999996 788899999999988765 4 999999887764  4         898888765        222 455666


Q ss_pred             hccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          89 IGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        89 ~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                      +....   .   .|.....|+|||++. |.|+.+.+..|..
T Consensus       186 ~~~~~---~---~g~~~~~VlIEEfL~-G~E~SV~al~dG~  219 (486)
T PRK05784        186 KEGSA---Y---YKDVEPKILVEEKVD-GVEYTLQVLTDGE  219 (486)
T ss_pred             HHhHh---h---ccCCCCeEEEEEccC-CeEEEEEEEECCC
Confidence            53211   0   122246799999998 6899999998864

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=97.96  E-value=3.6e-05  Score=77.47  Aligned_cols=88  Identities=15%  Similarity=0.188  Sum_probs=70.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      +.|+||.+|..++|.+|..++++.+|| |||+|+-...+|+|.           .+..+++++.++++.-.....     
T Consensus       124 eLglpTs~Y~fa~s~~e~~~a~~~iGf-PcvvKPvMSSSGkGq-----------svv~~~e~ve~AW~~A~~g~R-----  186 (394)
T COG0027         124 ELGLPTSKYRFADSLEELRAAVEKIGF-PCVVKPVMSSSGKGQ-----------SVVRSPEDVEKAWEYAQQGGR-----  186 (394)
T ss_pred             HhCCCCccccccccHHHHHHHHHHcCC-CeecccccccCCCCc-----------eeecCHHHHHHHHHHHHhcCC-----
Confidence            799999999999999999999999998 999999766554333           366789999999888764321     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQD  127 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D  127 (525)
                         |. -..|+||++++...|+.+-..+.
T Consensus       187 ---~~-~~RVIVE~fv~fd~EiTlLtvr~  211 (394)
T COG0027         187 ---GG-SGRVIVEEFVKFDFEITLLTVRA  211 (394)
T ss_pred             ---CC-CCcEEEEEEecceEEEEEEEEEE
Confidence               22 36799999999888887766553

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=97.95  E-value=0.00016  Score=86.09  Aligned_cols=98  Identities=18%  Similarity=0.249  Sum_probs=74.6

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+.+.+++.++++++|| ||+||+-.-.|  |+         |+.+..+.+|+.+++++.......  
T Consensus       125 ~~GVPvpp~t~~~v~~~eea~~~ae~iGy-PvIVKP~~GGG--Gr---------G~riV~~~eEL~~a~~~a~~ea~~--  190 (1143)
T TIGR01235       125 KAGVPVVPGTDGPPETMEEVLDFAAAIGY-PVIIKASWGGG--GR---------GMRVVRSEADVADAFQRAKSEAKA--  190 (1143)
T ss_pred             HcCCCCCCCcccCcCCHHHHHHHHHHcCC-CEEEEECCCCC--CC---------ccEEeCCHHHHHHHHHHHHHHHHH--
Confidence            7999999875  56899999999999997 99999953323  33         788888999999998887543210  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEe
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVII  137 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~  137 (525)
                      .   .|  ...++||++++..+|+.+.+..|..  |.++.+
T Consensus       191 ~---fg--~~~vlIEefI~g~reIeVqVlgD~~--G~vv~l  224 (1143)
T TIGR01235       191 A---FG--NDEVYVEKLIERPRHIEVQLLGDKH--GNVVHL  224 (1143)
T ss_pred             h---cC--CCcEEEEEcCCCCeEEEEEEEEeCC--CCEEEE
Confidence            0   12  2469999999888999999999964  455543

This enzyme plays a role in gluconeogensis but not glycolysis.

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.94  E-value=0.00017  Score=74.82  Aligned_cols=130  Identities=18%  Similarity=0.164  Sum_probs=90.3

Q ss_pred             cHHhhhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcc
Q psy7785          12 FSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH   91 (525)
Q Consensus        12 ~e~~~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~   91 (525)
                      .|.+-.+..|||||++..+++.+|+..+++++|+ |.|||.--. |=.||         |..+..+.+++...+..... 
T Consensus       102 ~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~-p~VlKtr~g-GYDGk---------GQ~~i~~~~~~~~~~~~~~~-  169 (375)
T COG0026         102 VEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGF-PAVLKTRRG-GYDGK---------GQWRIRSDADLELRAAGLAE-  169 (375)
T ss_pred             HHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCC-ceEEEeccc-cccCC---------CeEEeeCcccchhhHhhhhc-
Confidence            3433344899999999999999999999999996 999998422 11244         55666666666654444321 


Q ss_pred             ccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCCCHH-
Q psy7785          92 KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITES-  170 (525)
Q Consensus        92 ~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l~~~-  170 (525)
                                +   ...++|+|++..+|+++-+.|+..  |-+..+=.     +|++.+   +-++...+.|. .++.. 
T Consensus       170 ----------~---~~~vlE~fV~F~~EiSvi~aR~~~--G~~~~yP~-----~eN~h~---~gIl~~siaPa-~i~~~~  225 (375)
T COG0026         170 ----------G---GVPVLEEFVPFEREISVIVARSND--GEVAFYPV-----AENVHR---NGILRTSIAPA-RIPDDL  225 (375)
T ss_pred             ----------c---CceeEEeecccceEEEEEEEEcCC--CCEEEecc-----cceeee---cCEEEEEEecC-cCCHHH
Confidence                      1   122899999999999999999875  55666653     677765   56777777774 35543 


Q ss_pred             --HHHHHHH
Q psy7785         171 --LAQDIAD  177 (525)
Q Consensus       171 --~a~~~~~  177 (525)
                        .|++|+.
T Consensus       226 ~~~A~~~a~  234 (375)
T COG0026         226 QAQAEEMAK  234 (375)
T ss_pred             HHHHHHHHH
Confidence              4455544

>PRK08463 acetyl-CoA carboxylase subunit A; Validated

Probab=97.91  E-value=0.00018  Score=78.75  Aligned_cols=99  Identities=17%  Similarity=0.240  Sum_probs=72.5

Q ss_pred             hCCCCCCCcccc---CCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785          19 VSTVHSTDKVCL---EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        19 ~~GIpvp~~~~~---~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~   95 (525)
                      ++|||+|++...   .+.+++.++++++|| ||++|+..-.|  |+         ||.+..+.+|++++++........ 
T Consensus       124 ~~gIpvpp~~~~~~~~~~~~~~~~~~~igy-PvvvKP~~ggG--g~---------Gv~iv~~~~eL~~a~~~~~~~a~~-  190 (478)
T PRK08463        124 KNGIPIVPGTEKLNSESMEEIKIFARKIGY-PVILKASGGGG--GR---------GIRVVHKEEDLENAFESCKREALA-  190 (478)
T ss_pred             HcCCCCCCCccccCCCCHHHHHHHHHHhCC-CEEEEeCCCCC--CC---------ceEEeCCHHHHHHHHHHHHHHHHH-
Confidence            799999885432   578999999999997 99999964433  34         788889999999888765322110 


Q ss_pred             ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                       .   .+  -..++||+|+++++|+.+.+..|..  |.++.++
T Consensus       191 -~---~~--~~~vlvEefI~~~~~iev~v~~d~~--g~v~~~~  225 (478)
T PRK08463        191 -Y---FN--NDEVFMEKYVVNPRHIEFQILGDNY--GNIIHLC  225 (478)
T ss_pred             -h---cC--CCcEEEEecCCCCeEEEEEEEEcCC--CCEEEEe
Confidence             0   11  2469999999888888888888863  5666555

>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6

Probab=97.90  E-value=3.6e-05  Score=74.62  Aligned_cols=85  Identities=19%  Similarity=0.299  Sum_probs=62.2

Q ss_pred             hCCCCCCCccccCCHHHH----HHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVCLEDARTA----TNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea----~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~   94 (525)
                      .+|||||++.+++..+..    ......++| |++||+-..    |.     +  =||....+.+++.+++++.+.  . 
T Consensus         4 ~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~-P~~VKP~~~----Gs-----S--~Gi~~v~~~~el~~ai~~~~~--~-   68 (203)
T PF07478_consen    4 SAGIPTPPYVVVKKNEDDSDSIEKILEDLGF-PLFVKPASE----GS-----S--IGISKVHNEEELEEAIEKAFK--Y-   68 (203)
T ss_dssp             HTT-BB-SEEEEETTSHHHHHHHHHHHHHSS-SEEEEESST----ST-----T--TTEEEESSHHHHHHHHHHHTT--T-
T ss_pred             hcCCCCCCEEEEecccccchhHHHHHhhcCC-CEEEEECCC----Cc-----c--EEEEEcCCHHHHHHHHHHHhh--h-
Confidence            589999999999876553    345788997 999999633    12     1  268888899999999888742  1 


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                                -..+||||+++ |+|+.+|+..+..
T Consensus        69 ----------~~~vlVEefI~-G~E~tv~vl~~~~   92 (203)
T PF07478_consen   69 ----------DDDVLVEEFIS-GREFTVGVLGNGE   92 (203)
T ss_dssp             ----------HSEEEEEE--S-SEEEEEEEEESSS
T ss_pred             ----------cceEEEEeeec-ccceEEEEEecCC
Confidence                      25799999994 9999999998644

3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....

>PRK14016 cyanophycin synthetase; Provisional

Probab=97.90  E-value=4.1e-05  Score=87.71  Aligned_cols=81  Identities=15%  Similarity=0.223  Sum_probs=65.9

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+|++..+++.+++.++++++|| |||+|+..-  +.|+         ||.++ .+.+++.++++.+...      
T Consensus       224 ~~GIPvP~~~~v~s~~~a~~~a~~iG~-PvVVKP~~G--~~G~---------GV~~~v~~~~el~~a~~~a~~~------  285 (727)
T PRK14016        224 AAGVPVPEGRVVTSAEDAWEAAEEIGY-PVVVKPLDG--NHGR---------GVTVNITTREEIEAAYAVASKE------  285 (727)
T ss_pred             HCCcCCCCeeEeCCHHHHHHHHHHcCC-CEEEEECCC--CCCC---------ceEEecCCHHHHHHHHHHHHHh------
Confidence            799999999999999999999999997 999998632  2233         88885 5888999888876421      


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEE
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIV  125 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~  125 (525)
                             ...++||+|++ +.|+.+.+.
T Consensus       286 -------~~~viVEe~I~-G~d~Rv~Vv  305 (727)
T PRK14016        286 -------SSDVIVERYIP-GKDHRLLVV  305 (727)
T ss_pred             -------CCeEEEEEecC-CceEEEEEE
Confidence                   14699999998 788888765

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=97.86  E-value=8e-05  Score=80.43  Aligned_cols=86  Identities=16%  Similarity=0.155  Sum_probs=62.9

Q ss_pred             hCCCCCC-CccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCC----cccHHHHHHHHhcccc
Q psy7785          19 VSTVHST-DKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNN----VQDIPPILEKMIGHKL   93 (525)
Q Consensus        19 ~~GIpvp-~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~----~eea~~a~~~l~~~~~   93 (525)
                      ++|||+| .+..+.+.+|+..++.+++| |||||+....+|  |         ||.+..+    .+++...+.++...  
T Consensus       115 ~~gIptp~~~~~~~~~~e~~~~~~~~~~-PvVVKP~~~sgg--k---------GV~v~~~~~~~~~ea~~~~~~~~~~--  180 (435)
T PRK06395        115 RHNIPGNINFNACFSEKDAARDYITSMK-DVAVKPIGLTGG--K---------GVKVTGEQLNSVDEAIRYAIEILDR--  180 (435)
T ss_pred             HCCcCCCcccceeCChHHHHHHHHhhCC-CEEEEeCCCCCC--C---------CeEEecCchhhHHHHHHHHHHHhCC--
Confidence            7999997 55577777888888888887 999999877765  3         7877742    34444444443211  


Q ss_pred             ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                                 ...++||||+. |.|+.+-+..|...
T Consensus       181 -----------~~~viIEEfl~-G~E~Svd~~~dg~~  205 (435)
T PRK06395        181 -----------DGVVLIEKKMT-GEEFSLQAFSDGKH  205 (435)
T ss_pred             -----------CCcEEEEeecC-CceEEEEEEEcCCe
Confidence                       24599999997 67999999998654

>TIGR02068 cya_phycin_syn cyanophycin synthetase

Probab=97.86  E-value=5e-05  Score=88.63  Aligned_cols=81  Identities=21%  Similarity=0.265  Sum_probs=66.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      .+|||+|++.++++.+++.++++++|| |+|+|+..-..  |+         ||.++ .+.+++.++++.+...      
T Consensus       223 ~~GIpvP~~~~~~s~~ea~~~~~~ig~-PvVVKP~~g~~--G~---------GV~l~v~s~~el~~a~~~a~~~------  284 (864)
T TIGR02068       223 DAGVPVPEGTVVQSAEDAWEAAQDLGY-PVVIKPYDGNH--GR---------GVTINILTRDEIESAYEAAVEE------  284 (864)
T ss_pred             HcCcCCCCEEEECCHHHHHHHHHHcCC-CEEEEECCCCC--cc---------CEEEEeCCHHHHHHHHHHHHhh------
Confidence            799999999999999999999999997 99999974322  33         78885 5889999888876421      


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEE
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIV  125 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~  125 (525)
                             ...++||+|++ +.|+.+.+.
T Consensus       285 -------~~~vlVEefI~-G~e~rvlVv  304 (864)
T TIGR02068       285 -------SSGVIVERFIT-GRDHRLLVV  304 (864)
T ss_pred             -------CCcEEEEEecc-CCEEEEEEE
Confidence                   24699999997 689988775

Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=97.83  E-value=6.9e-05  Score=89.50  Aligned_cols=88  Identities=8%  Similarity=0.145  Sum_probs=73.0

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      +.|||+|++..+++.+|+.++++++|| |||+|+....+|  +         ||.+..|.+|+.+++++......     
T Consensus       679 ~~GIp~P~~~~~~s~ee~~~~~~~igy-PvvVKP~~~~Gg--~---------Gv~iv~~~eeL~~~~~~a~~~s~-----  741 (1066)
T PRK05294        679 KLGIPQPPNGTATSVEEALEVAEEIGY-PVLVRPSYVLGG--R---------AMEIVYDEEELERYMREAVKVSP-----  741 (1066)
T ss_pred             HcCcCCCCeEEECCHHHHHHHHHhcCC-CeEEEeCCCCCC--C---------cEEEECCHHHHHHHHHHHHhhCC-----
Confidence            799999999999999999999999997 999999654443  2         78888899999998888754211     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                            ...++||+++++..|+.+.+.+|..
T Consensus       742 ------~~~vlIEefI~G~~E~sV~~v~dg~  766 (1066)
T PRK05294        742 ------DHPVLIDKFLEGAIEVDVDAICDGE  766 (1066)
T ss_pred             ------CCcEEEEecCCCCEEEEEEEEecCC
Confidence                  2459999999876799999998865

>PLN02522 ATP citrate (pro-S)-lyase

Probab=97.79  E-value=0.00025  Score=78.85  Aligned_cols=124  Identities=16%  Similarity=0.218  Sum_probs=93.0

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+||+||-||+++..++|.+...|+-..-.+-+++++... .+.++++.+.+||++++|++..--+..+..+.++.+.+
T Consensus       167 pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~~~  246 (608)
T PLN02522        167 PGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEALKQ  246 (608)
T ss_pred             CCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHHHH
Confidence            57899999999999999999999999777778888877632 38899999999999999998654344444555554433


Q ss_pred             HHHhcCCCCcEEEEeCCcch-----------------------HHHHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785         380 ACKSFKLSIPLVVRLEGTNV-----------------------QEGKRILDESKLPLIFASDLDEAASLVNACK  430 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~~~-----------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~  430 (525)
                      +    ..+|||++...|...                       ..-...|+++|+.+.  +++++-...+.+..
T Consensus       247 a----~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv--~s~~El~~~~~~~~  314 (608)
T PLN02522        247 G----KVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVP--TSFEALEAAIKETF  314 (608)
T ss_pred             h----cCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEe--CCHHHHHHHHHHHH
Confidence            2    247999986544211                       123558899999988  88888777776543

>PRK12999 pyruvate carboxylase; Reviewed

Probab=97.78  E-value=0.0003  Score=84.15  Aligned_cols=99  Identities=19%  Similarity=0.279  Sum_probs=74.9

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+.+.+|+.++++++|| ||++|+-.-.+|  +         ||++..+.+|+.+++++.......  
T Consensus       129 ~~GVPv~P~~~~~v~s~eea~~~a~~iGy-PvVVKP~~GgGG--r---------Gv~vV~~~eEL~~a~~~a~~ea~~--  194 (1146)
T PRK12999        129 KAGVPVIPGSEGPIDDIEEALEFAEEIGY-PIMLKASAGGGG--R---------GMRIVRSEEELEEAFERAKREAKA--  194 (1146)
T ss_pred             HCCCCCCCCcccCCCCHHHHHHHHHHhCC-CEEEEECCCCCC--C---------CeEEeCCHHHHHHHHHHHHHHHHh--
Confidence            7999998766  47999999999999997 999999543332  3         788889999999988886543210  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                      .   .|  ...++||+++++.+|+.+.+..|..  |-++.+.
T Consensus       195 ~---fg--~~~vlVEefI~g~~~ieVqvl~D~~--G~vv~l~  229 (1146)
T PRK12999        195 A---FG--NDEVYLEKYVENPRHIEVQILGDKH--GNVVHLY  229 (1146)
T ss_pred             h---cC--CCcEEEecCCCCCeEEEEEEEEECC--CCEEEEE
Confidence            0   11  2469999999988888898888864  4555554

>PRK07206 hypothetical protein; Provisional

Probab=97.73  E-value=0.00016  Score=77.43  Aligned_cols=90  Identities=19%  Similarity=0.214  Sum_probs=70.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCC--cEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFK--EYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~--PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      +.|||+|++..+++.+++.++++++||.  |||||+....++           -||.+..|.+|++++++++.+..-   
T Consensus       118 ~~gi~~p~~~~~~~~~e~~~~~~~~g~~~~P~VvKP~~g~gs-----------~gv~~v~~~~el~~~~~~~~~~~~---  183 (416)
T PRK07206        118 EAGLPAARQINTADWEEAEAWLRENGLIDRPVVIKPLESAGS-----------DGVFICPAKGDWKHAFNAILGKAN---  183 (416)
T ss_pred             HcCCCcccEEecCCHHHHHHHHHhcCCCCCCEEEeCCCCCCC-----------CCEEEeCCHHHHHHHHHHHHhccc---
Confidence            7999999999999999999999998742  999999544332           289999999999999999865311   


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEE
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQ  126 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~  126 (525)
                      .   .+.....++|||+++ |.|+.+.+..
T Consensus       184 ~---~~~~~~~~lvEe~i~-G~E~sv~~~~  209 (416)
T PRK07206        184 K---LGLVNETVLVQEYLI-GTEYVVNFVS  209 (416)
T ss_pred             c---CCCCCCeEEEEEccc-cEEEEEEEEE
Confidence            1   122235799999998 6899887765

>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed

Probab=97.73  E-value=8.5e-05  Score=77.38  Aligned_cols=83  Identities=17%  Similarity=0.245  Sum_probs=65.0

Q ss_pred             hCCCCCCCccccCCHHH----HHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVCLEDART----ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~ee----a~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~   94 (525)
                      .+|||+|++..+.+.++    ...+.+.+|| |+|+|+....++           -||.+..+.+++.+++++.+..   
T Consensus       133 ~~GIp~p~~~~~~~~~~~~~~~~~~~~~~~~-P~vVKP~~~gsS-----------~Gv~~v~~~~el~~a~~~~~~~---  197 (333)
T PRK01966        133 AAGIPVAPYVVLTRGDWEEASLAEIEAKLGL-PVFVKPANLGSS-----------VGISKVKNEEELAAALDLAFEY---  197 (333)
T ss_pred             HcCCCCCCEEEEeccccchhhHHHHHHhcCC-CEEEEeCCCCCc-----------cCEEEECCHHHHHHHHHHHHhc---
Confidence            79999999998876654    2456778997 999999543221           2788888999999998887431   


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQD  127 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D  127 (525)
                                -..++||++++ |+|+.+++..|
T Consensus       198 ----------~~~vlvEefI~-G~E~~v~vl~~  219 (333)
T PRK01966        198 ----------DRKVLVEQGIK-GREIECAVLGN  219 (333)
T ss_pred             ----------CCcEEEEcCcC-CEEEEEEEECC
Confidence                      14699999998 69999999976

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=97.72  E-value=0.00044  Score=71.21  Aligned_cols=123  Identities=13%  Similarity=0.198  Sum_probs=89.7

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+||+||-||+++..+++.+...|+-..-.+-+++++... .+.++|+.+.+||++++|++..-.+... +.-+..+++
T Consensus       169 ~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~-e~~aa~fi~  247 (317)
T PTZ00187        169 KGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTA-EEEAAEWIK  247 (317)
T ss_pred             CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCch-hHHHHHHHH
Confidence            57899999999999999999999999888888899886332 4899999999999999999764432222 222333333


Q ss_pred             HHHhcCCCCcEEEEeCCcc--------------------hHHHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785         380 ACKSFKLSIPLVVRLEGTN--------------------VQEGKRILDESKLPLIFASDLDEAASLVNAC  429 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~~--------------------~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l  429 (525)
                      ..   ..+|||++...|..                    ...-...|+++|+++.  +++++-...+.+.
T Consensus       248 ~~---~~~KPVVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v~--~~~~el~~~~~~~  312 (317)
T PTZ00187        248 NN---PIKKPVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVV--KSPAQLGKTMLEV  312 (317)
T ss_pred             hh---cCCCcEEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCCeEe--CCHHHHHHHHHHH
Confidence            32   14799998644421                    1222457889999988  8888877777654

>PRK14572 D-alanyl-alanine synthetase A; Provisional

Probab=97.71  E-value=0.00013  Score=76.50  Aligned_cols=83  Identities=17%  Similarity=0.132  Sum_probs=62.9

Q ss_pred             hCCCCCCCccccC------CHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccc
Q psy7785          19 VSTVHSTDKVCLE------DARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK   92 (525)
Q Consensus        19 ~~GIpvp~~~~~~------~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~   92 (525)
                      .+|||||++..++      +.+++....+.++| |+|||+....+  +         =||.+..+.++++.++++++.. 
T Consensus       140 ~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l~~-PvvVKP~~ggs--S---------~GV~~v~~~~el~~a~~~~~~~-  206 (347)
T PRK14572        140 QSGQKVAPFFELEKLKYLNSPRKTLLKLESLGF-PQFLKPVEGGS--S---------VSTYKITNAEQLMTLLALIFES-  206 (347)
T ss_pred             HcCCCCCCEEEEEccccccChHHHHHHHHhcCC-CEEEecCCCCC--C---------CCEEEECCHHHHHHHHHHHHhc-
Confidence            7999999998874      34455555678997 99999953311  1         2788888999999988887521 


Q ss_pred             cccccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785          93 LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQD  127 (525)
Q Consensus        93 ~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D  127 (525)
                                  -..++|||+++ ++|+.+++..+
T Consensus       207 ------------~~~vlVEefI~-G~E~sv~vi~~  228 (347)
T PRK14572        207 ------------DSKVMSQSFLS-GTEVSCGVLER  228 (347)
T ss_pred             ------------CCCEEEEcCcc-cEEEEEEEEeC
Confidence                        13589999997 69999999864

>PRK10446 ribosomal protein S6 modification protein; Provisional

Probab=97.69  E-value=0.00022  Score=73.06  Aligned_cols=85  Identities=12%  Similarity=0.175  Sum_probs=64.2

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ..|||+|++.++.+++++.++++++ +| |+|+|+-.-.+  |+         ||.+..+.+++....+.+...      
T Consensus       109 ~~gip~P~t~~~~~~~~~~~~~~~~~~~-P~VvKP~~g~~--g~---------GV~~v~~~~~~~~~~~~~~~~------  170 (300)
T PRK10446        109 RQGIDLPVTGIAHSPDDTSDLIDMVGGA-PLVVKLVEGTQ--GI---------GVVLAETRQAAESVIDAFRGL------  170 (300)
T ss_pred             HcCCCCCCEEEeCCHHHHHHHHHHhCCC-CEEEEECCCCC--cc---------cEEEEcCHHHHHHHHHHHHhc------
Confidence            7999999999999999998888888 65 99999954332  23         788887877776666554211      


Q ss_pred             CCCCCcccCeEEEEeeeC--CceeEEEEEEEcC
Q psy7785          98 TPKTGINVNKVMVAKSVN--ITRETYFCIVQDR  128 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~--~~~E~~vgv~~D~  128 (525)
                             -..++||||++  .+.|+.+.+.-+.
T Consensus       171 -------~~~~lvQe~I~~~~g~d~rv~vig~~  196 (300)
T PRK10446        171 -------NAHILVQEYIKEAQGCDIRCLVVGDE  196 (300)
T ss_pred             -------CCCEEEEeeeccCCCceEEEEEECCE
Confidence                   13589999996  5799999987543

>PRK02186 argininosuccinate lyase; Provisional

Probab=97.68  E-value=0.00019  Score=84.22  Aligned_cols=85  Identities=16%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++.++| |||||+..-.++  +         ||.+..|.+|+.++++++...       
T Consensus       117 ~~GIp~P~~~~v~~~~e~~~~~~~~~~-PvVVKP~~g~gS--~---------GV~~v~~~~el~~a~~~~~~~-------  177 (887)
T PRK02186        117 DHGIDVPRTHALALRAVALDALDGLTY-PVVVKPRMGSGS--V---------GVRLCASVAEAAAHCAALRRA-------  177 (887)
T ss_pred             HcCCCCCCEEEeCCHHHHHHHHHhCCC-CEEEEeCCCCCC--C---------CeEEECCHHHHHHHHHHHHhc-------
Confidence            799999999999999999999999997 999999544332  2         788999999999998887532       


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                         +  ...++||||++ |.|+.+.+..+.
T Consensus       178 ---~--~~~~lvEEfI~-G~E~sVe~i~~~  201 (887)
T PRK02186        178 ---G--TRAALVQAYVE-GDEYSVETLTVA  201 (887)
T ss_pred             ---C--CCcEEEeeccc-CCcEEEEEEEEC
Confidence               1  24699999998 589999887764

>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []

Probab=97.64  E-value=0.00012  Score=70.11  Aligned_cols=83  Identities=18%  Similarity=0.344  Sum_probs=46.1

Q ss_pred             hhCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          18 PVSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        18 ~~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      .++|||+|++.++.+++++..+.+++ ++ |+|+|+..  ++.|+         ||.+..+.+++....+.....     
T Consensus        12 ~~~gipvP~t~~~~~~~~~~~~~~~~~~~-p~ViKp~~--g~~G~---------gV~~i~~~~~~~~~l~~~~~~-----   74 (190)
T PF08443_consen   12 AKAGIPVPETRVTNSPEEAKEFIEELGGF-PVVIKPLR--GSSGR---------GVFLINSPDELESLLDAFKRL-----   74 (190)
T ss_dssp             HHTT-----EEEESSHHHHHHHHHHH--S-SEEEE-SB------------------EEEESHCHHHHHHH----------
T ss_pred             HHCCcCCCCEEEECCHHHHHHHHHHhcCC-CEEEeeCC--CCCCC---------EEEEecCHHHHHHHHHHHHhc-----
Confidence            37999999999999999999999999 76 99999953  33344         788877888887665554211     


Q ss_pred             cCCCCCcccCeEEEEeeeCCc--eeEEEEEE
Q psy7785          97 QTPKTGINVNKVMVAKSVNIT--RETYFCIV  125 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~--~E~~vgv~  125 (525)
                              -..+++|+|++..  +++.+-+.
T Consensus        75 --------~~~~~~Q~fI~~~~g~d~Rv~Vi   97 (190)
T PF08443_consen   75 --------ENPILVQEFIPKDGGRDLRVYVI   97 (190)
T ss_dssp             --------TTT-EEEE----SS---EEEEEE
T ss_pred             --------cCcceEeccccCCCCcEEEEEEE
Confidence                    1346999999754  46766665

It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.

>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional

Probab=97.62  E-value=0.00036  Score=73.29  Aligned_cols=89  Identities=15%  Similarity=0.262  Sum_probs=66.9

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++  ++++++       ++| |||||+....+  ||         ||.+..|.+|+.+++++++.+..     
T Consensus       133 ~aGIp~p~~--~~~~~~-------i~~-PvIVKp~~g~g--gk---------Gv~i~~s~~El~~~~~~l~~~~~-----  186 (358)
T PRK13278        133 EAGIRIPRK--YESPED-------IDR-PVIVKLPGAKG--GR---------GYFIAKSPEEFKEKIDKLIERGL-----  186 (358)
T ss_pred             HcCCCCCCE--eCCHHH-------cCC-CEEEEeCCCCC--CC---------CeEEeCCHHHHHHHHHHHHhccc-----
Confidence            899999985  566554       566 99999964443  34         89999999999999999875422     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                        .+. ...++||||+. |.|+++-+...|.. |=+-++|
T Consensus       187 --~~~-~~~~iIEEfI~-G~e~sv~~f~s~~~-~~~e~l~  221 (358)
T PRK13278        187 --ITE-VEEAIIQEYVV-GVPYYFHYFYSPIK-NRLELLG  221 (358)
T ss_pred             --cCC-CCeEEEEecCC-CcEEEEEEEEeccC-CeEEEEe
Confidence              122 47899999997 78999999887643 4455656

>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Probab=97.60  E-value=0.00023  Score=80.80  Aligned_cols=83  Identities=16%  Similarity=0.184  Sum_probs=62.9

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEeC---CcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN---NVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~---~~eea~~a~~~l~~~~~~   94 (525)
                      ..|||||++.++++.+++.++...+ |+ |||||+.....  |+         ||.+..   +.+++.++++..+..   
T Consensus       485 ~aGIPVP~g~~~~~~~~a~~~~~~~~g~-PVVVKP~~g~~--G~---------GVsi~~~~~~~eel~~Al~~A~~~---  549 (737)
T TIGR01435       485 EAGFRVPFGDEFSSQALALEAFSLFENK-AIVVKPKSTNY--GL---------GITIFKNGFTLEDFQEALNIAFSE---  549 (737)
T ss_pred             HcCcCCCCEEEECCHHHHHHHHHHhcCC-CEEEeeCCCCC--cC---------CeEEecCcCCHHHHHHHHHHHHhc---
Confidence            7999999999999998888888888 55 99999964432  33         777754   367777777654321   


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQD  127 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D  127 (525)
                                -+.|+||++++ |.|+.+.|.-+
T Consensus       550 ----------~~~VLVEefI~-G~EyRv~VIg~  571 (737)
T TIGR01435       550 ----------DSSVIIEEFLP-GTEYRFFVLND  571 (737)
T ss_pred             ----------CCeEEEEeccc-CCEEEEEEECC
Confidence                      24699999998 79999988744

gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=97.60  E-value=0.0009  Score=68.20  Aligned_cols=121  Identities=17%  Similarity=0.246  Sum_probs=83.0

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+|++||-||+.+...+|.+...|+-..-.+-+++++..+ .+.+.++.+.+||++++|++..-+......+.++.+  
T Consensus       143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~~--  220 (286)
T TIGR01019       143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFI--  220 (286)
T ss_pred             CCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHHH--
Confidence            57899999999999999999999999777777777775422 388999999999999999976543211112222221  


Q ss_pred             HHHhcCCCCcEEEEeCCcch-------------------HH-HHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785         380 ACKSFKLSIPLVVRLEGTNV-------------------QE-GKRILDESKLPLIFASDLDEAASLVNA  428 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~~~-------------------~~-~~~~L~~~Gvpvf~~~s~~~Av~Al~~  428 (525)
                       ...  .+|||++...|...                   .+ ....|++.|+...  +++++-+..+.+
T Consensus       221 -~~~--~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~aa~rqaGvi~v--~~~~el~d~l~~  284 (286)
T TIGR01019       221 -KQN--MSKPVVGFIAGATAPPGKRMGHAGAIISGGKGTAESKIEALEAAGVTVV--KSPSDIGELLAE  284 (286)
T ss_pred             -Hhc--CCCCEEEEEecCCCCccccccchhhhhcCCCCCHHHHHHHHHHCCCeEe--CCHHHHHHHHHH
Confidence             111  47999986555311                   11 1346777788766  777776666543

ATP citrate lyases appear to form an outgroup.

>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX

Probab=97.60  E-value=0.00033  Score=70.69  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=62.3

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+.+.+++..+...+|| |+|+|+..-.+|  +         ||.+..+.+++.++++....  +     
T Consensus        97 ~~gip~P~t~~~~~~~~~~~~~~~~~~-P~vvKP~~g~~g--~---------gv~~v~~~~~l~~~~~~~~~--~-----  157 (280)
T TIGR02144        97 KAGVPTPRTYLAFDREAALKLAEALGY-PVVLKPVIGSWG--R---------LVALIRDKDELESLLEHKEV--L-----  157 (280)
T ss_pred             HCCcCCCCeEeeCCHHHHHHHHHHcCC-CEEEEECcCCCc--C---------CEEEECCHHHHHHHHHHHHh--h-----
Confidence            699999999999999999999889997 999999644332  3         68777787777765543211  1     


Q ss_pred             CCCCcccCeEEEEeeeCC-ceeEEEEEE
Q psy7785          99 PKTGINVNKVMVAKSVNI-TRETYFCIV  125 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~-~~E~~vgv~  125 (525)
                        .+.....++||+++++ +.|+.+.+.
T Consensus       158 --~~~~~~~~ivQefI~~~~~d~~v~vi  183 (280)
T TIGR02144       158 --GGSQHKLFYIQEYINKPGRDIRVFVI  183 (280)
T ss_pred             --cCCcCCeEEEEcccCCCCCceEEEEE
Confidence              0101246899999974 678777765

The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.

>PRK12767 carbamoyl phosphate synthase-like protein; Provisional

Probab=97.56  E-value=0.00033  Score=72.28  Aligned_cols=81  Identities=14%  Similarity=0.187  Sum_probs=64.0

Q ss_pred             hCCCCCCCccccCCHHHHHH--HHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATN--ILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~--~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++..+++.+++..  ..++++| |+|+|+..-.+  ++         ||.+..|.+++.+++.+.        
T Consensus       121 ~~gip~p~~~~~~~~~~~~~~~~~~~~~~-P~viKP~~g~~--s~---------gv~~v~~~~el~~~~~~~--------  180 (326)
T PRK12767        121 ENGIPTPKSYLPESLEDFKAALAKGELQF-PLFVKPRDGSA--SI---------GVFKVNDKEELEFLLEYV--------  180 (326)
T ss_pred             HcCCCCCCEEcccCHHHHHhhhhcccCCC-CEEEEeCCCCC--cc---------CeEEeCCHHHHHHHHHhC--------
Confidence            79999999999999999887  5678897 99999953322  22         788888888877665432        


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                               ..++||++++ +.|+.+.+..|..
T Consensus       181 ---------~~~lvqeyi~-G~e~~v~~~~~~~  203 (326)
T PRK12767        181 ---------PNLIIQEFIE-GQEYTVDVLCDLN  203 (326)
T ss_pred             ---------CCeEEEeccC-CceEEEEEEEcCC
Confidence                     2689999995 7999999998843

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional

Probab=97.56  E-value=0.00024  Score=81.46  Aligned_cols=81  Identities=16%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEe---CCcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT---NNVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~---~~~eea~~a~~~l~~~~~~   94 (525)
                      ++|||||++.++.+.+++..+++++ || |||||+....+|  +         ||.+.   .+.+++.++++..+..   
T Consensus       498 ~~GIpvP~~~~~~~~e~a~~~~~~~~g~-PvVVKP~~g~~G--~---------GV~~~~~~~~~eel~~A~~~a~~~---  562 (752)
T PRK02471        498 EAGFPVPAGDEFTSLEEALADYSLFADK-AIVVKPKSTNFG--L---------GISIFKEPASLEDYEKALEIAFRE---  562 (752)
T ss_pred             HCCcCCCCEEEEcCHHHHHHHHHHhcCC-CEEEEECCCCCc--C---------CeEEecCcCCHHHHHHHHHHHHhc---
Confidence            7999999999999999998888775 76 999999754333  3         67664   2577788887775321   


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEE
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIV  125 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~  125 (525)
                                -..++|||+++ |.|+.+.+.
T Consensus       563 ----------~~~vlVEEfI~-G~E~Rv~Vi  582 (752)
T PRK02471        563 ----------DSSVLVEEFIV-GTEYRFFVL  582 (752)
T ss_pred             ----------CCcEEEEeccc-CCEEEEEEE
Confidence                      24599999997 799998776

>PRK14570 D-alanyl-alanine synthetase A; Provisional

Probab=97.56  E-value=0.00032  Score=74.06  Aligned_cols=84  Identities=15%  Similarity=0.243  Sum_probs=62.8

Q ss_pred             hCCCCCCCccccC------CHHHHHH-HHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcc
Q psy7785          19 VSTVHSTDKVCLE------DARTATN-ILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH   91 (525)
Q Consensus        19 ~~GIpvp~~~~~~------~~eea~~-~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~   91 (525)
                      ..|||||++..++      +.+++.. +.+.+|| |++||+....    .       .-||.+..+.+|+.+++++.+..
T Consensus       139 ~~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~lg~-PviVKP~~~G----s-------S~Gv~~v~~~~el~~al~~a~~~  206 (364)
T PRK14570        139 SFNIPLVPFIGFRKYDYFLDKEGIKKDIKEVLGY-PVIVKPAVLG----S-------SIGINVAYNENQIEKCIEEAFKY  206 (364)
T ss_pred             HcCCCCCCEEEEeccccccchHHHHHHHHHhcCC-CEEEEeCCCC----C-------CCcEEEeCCHHHHHHHHHHHHhC
Confidence            7999999987654      3455544 4467997 9999995332    1       12788888999999999887531


Q ss_pred             ccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          92 KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        92 ~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                                   -..++||+++. ++|+.+++.-|.
T Consensus       207 -------------~~~vlVEefI~-GrEi~v~Vlg~~  229 (364)
T PRK14570        207 -------------DLTVVIEKFIE-AREIECSVIGNE  229 (364)
T ss_pred             -------------CCCEEEECCcC-CEEEEEEEECCC
Confidence                         13599999998 799999998653

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=97.55  E-value=0.0012  Score=67.38  Aligned_cols=122  Identities=16%  Similarity=0.233  Sum_probs=83.4

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+|++||-||+.+...+|.+...|+-..-.+-++..+..+ .+.+.++.+.+||++++|++.+-+........++.+  
T Consensus       145 ~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~~--  222 (291)
T PRK05678        145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYI--  222 (291)
T ss_pred             CCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHHH--
Confidence            57899999999999999999999999777777777764422 378899999999999999876543212111222221  


Q ss_pred             HHHhcCCCCcEEEEeCCcch--------------------HHHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785         380 ACKSFKLSIPLVVRLEGTNV--------------------QEGKRILDESKLPLIFASDLDEAASLVNAC  429 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~~~--------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l  429 (525)
                       .+.  .+|||++...|...                    ......|++.|+...  +++++-...+..+
T Consensus       223 -~~~--~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi~v--~~~~el~~~~~~~  287 (291)
T PRK05678        223 -KAN--VTKPVVGYIAGVTAPPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKVA--RTPSEIGELLKEV  287 (291)
T ss_pred             -HHc--CCCCEEEEEecCCCCCCCcccchhhhccCCCCCHHHHHHHHHHCCCeEC--CCHHHHHHHHHHH
Confidence             111  37999986555311                    011245777788766  7777777666554

>PRK06524 biotin carboxylase-like protein; Validated

Probab=97.55  E-value=0.00041  Score=75.23  Aligned_cols=84  Identities=17%  Similarity=0.226  Sum_probs=65.2

Q ss_pred             hCCCCCCCccc--cCCHHHHHHHHHh--cCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVC--LEDARTATNILKD--LNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~--~~~~eea~~~a~~--lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~   94 (525)
                      ..|||||++..  +.+.+++..+++.  +|| |||||+-.  +|-|+         ||.+..+.++++++++++..    
T Consensus       152 ~aGIPtpp~~~~~~~~~eel~~~~~~~~IGy-PvVVKP~~--GGSS~---------GV~~Vkn~eELe~a~~~~~~----  215 (493)
T PRK06524        152 EAGVPSVPHVLGRVDSYDELSALAHGAGLGD-DLVVQTPY--GDSGS---------TTFFVRGQRDWDKYAGGIVG----  215 (493)
T ss_pred             HcCCCCCCcccccCCCHHHHHHHHHhccCCC-cEEEEECC--CCCCc---------CEEEeCCHHHHHHHHHHhcC----
Confidence            79999999998  4677777777765  997 99999963  33233         78888899999888777532    


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                                ...++||++++ +.|+.+.+.+|..
T Consensus       216 ----------~~~viVEe~I~-GrEitVev~vd~d  239 (493)
T PRK06524        216 ----------QPEIKVMKRIR-NVEVCIEACVTRH  239 (493)
T ss_pred             ----------CCCEEEEeccC-cEEEEEEEEEeCC
Confidence                      13589999997 7999998888854

>PRK14568 vanB D-alanine--D-lactate ligase; Provisional

Probab=97.53  E-value=0.00023  Score=74.42  Aligned_cols=82  Identities=12%  Similarity=0.144  Sum_probs=62.6

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      .+|||+|++.++++.++.  ..+.++| |+|||+....+  ++         ||.+..+.+|+.+++++....       
T Consensus       142 ~~GIp~p~~~~~~~~~~~--~~~~l~~-P~iVKP~~~gs--S~---------Gv~~v~~~~eL~~a~~~a~~~-------  200 (343)
T PRK14568        142 NAGIATPAFWTVTADERP--DAATLTY-PVFVKPARSGS--SF---------GVSKVNSADELDYAIESARQY-------  200 (343)
T ss_pred             HcCcCcCCEEEEECCchh--hhhhcCC-CEEEEeCCCCC--CC---------CEEEeCCHHHHHHHHHHHHhc-------
Confidence            799999999998876543  2457897 99999954322  12         788888999999888776321       


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                            -..++||++++ ++|+.+++..|.
T Consensus       201 ------~~~vlVEe~I~-G~E~sv~vl~~~  223 (343)
T PRK14568        201 ------DSKVLIEEAVV-GSEVGCAVLGNG  223 (343)
T ss_pred             ------CCcEEEECCcC-CEEEEEEEEcCC
Confidence                  14699999998 699999998764

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=97.52  E-value=0.0014  Score=67.18  Aligned_cols=123  Identities=14%  Similarity=0.187  Sum_probs=87.6

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCC--CCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG--VNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLV  378 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~--a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~  378 (525)
                      .|+|++||-||+.+....|.+..+|+-..-.+-+++.  ++. .+.++++.+.+||++++|++.+-++... ..-.+.++
T Consensus       150 ~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv-~~~d~L~yl~~Dp~T~~I~ly~E~~G~~-~~d~~~f~  227 (300)
T PLN00125        150 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGT-NFVDCLEKFVKDPQTEGIILIGEIGGTA-EEDAAAFI  227 (300)
T ss_pred             CCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCC-CHHHHHHHHhhCCCCcEEEEEeccCCch-HHHHHHHH
Confidence            5789999999999999999999999877666777766  332 3889999999999999999865442111 12233444


Q ss_pred             HHHHhcCCCCcEEEEeCCcch--------------------HHHHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785         379 NACKSFKLSIPLVVRLEGTNV--------------------QEGKRILDESKLPLIFASDLDEAASLVNACK  430 (525)
Q Consensus       379 ~a~~~~~~~kPivv~~~g~~~--------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~  430 (525)
                      ++++   .+|||++...|...                    ......+++.|+...  +++++-...+....
T Consensus       228 ~aa~---~~KPVV~lk~Grs~~~g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi~v--~~~~el~~~~~~~~  294 (300)
T PLN00125        228 KESG---TEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVV--ESPAKIGVAMLEVF  294 (300)
T ss_pred             HHhc---CCCCEEEEEecCCCCCCCCccchhhhhcCCCCCHHHHHHHHHHCCCeEe--CCHHHHHHHHHHHH
Confidence            5444   37999986544211                    112447788888877  88888777776543

>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family

Probab=97.52  E-value=0.00052  Score=68.74  Aligned_cols=84  Identities=14%  Similarity=0.149  Sum_probs=61.8

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      .+|||+|++..+.+.+++.++.++++| |+|+|+..-.+|  +         ||.+..+.+++.+.+..+...       
T Consensus        98 ~~gi~~P~t~~~~~~~~~~~~~~~~~~-p~vvKP~~g~~g--~---------gv~~i~~~~~l~~~~~~~~~~-------  158 (277)
T TIGR00768        98 KAGLPQPRTGLAGSPEEALKLIEEIGF-PVVLKPVFGSWG--R---------LVSLARDKQAAETLLEHFEQL-------  158 (277)
T ss_pred             HCCCCCCCEEEeCCHHHHHHHHHhcCC-CEEEEECcCCCC--C---------ceEEEcCHHHHHHHHHHHHHh-------
Confidence            799999999999999999999999997 999999654332  3         677777888887766654321       


Q ss_pred             CCCCcccCeEEEEeeeCCc--eeEEEEE
Q psy7785          99 PKTGINVNKVMVAKSVNIT--RETYFCI  124 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~--~E~~vgv  124 (525)
                         +.....++||+++++.  .++.+.+
T Consensus       159 ---~~~~~~~lvQe~I~~~~~~~~rv~v  183 (277)
T TIGR00768       159 ---NGPQNLFYVQEYIKKPGGRDIRVFV  183 (277)
T ss_pred             ---cccCCcEEEEeeecCCCCceEEEEE
Confidence               1012469999999853  3555544

This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=97.50  E-value=0.00038  Score=80.97  Aligned_cols=86  Identities=19%  Similarity=0.138  Sum_probs=66.5

Q ss_pred             hCCCCCCCccccCC------HH-HHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcc
Q psy7785          19 VSTVHSTDKVCLED------AR-TATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH   91 (525)
Q Consensus        19 ~~GIpvp~~~~~~~------~e-ea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~   91 (525)
                      .+|||||++..++.      .+ +...+.+++|| |+|||+-...    .       .-||.+..+.+|+.+++++.+..
T Consensus       578 ~~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg~-P~iVKP~~~G----s-------S~Gv~~v~~~~el~~a~~~a~~~  645 (809)
T PRK14573        578 DVGVPVVPYQPLTLAGWKREPELCLAHIVEAFSF-PMFVKTAHLG----S-------SIGVFEVHNVEELRDKISEAFLY  645 (809)
T ss_pred             HCCCCCCCEEEEechhcccChHHHHHHHHHhcCC-CEEEeeCCCC----C-------CCCEEEECCHHHHHHHHHHHHhc
Confidence            79999999988863      22 23456788997 9999996432    1       13888889999999999887521


Q ss_pred             ccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          92 KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        92 ~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                                   -..++|||++.+++|+.+++..|..
T Consensus       646 -------------~~~vlVEe~i~~grEi~v~vl~~~~  670 (809)
T PRK14573        646 -------------DTDVFVEESRLGSREIEVSCLGDGS  670 (809)
T ss_pred             -------------CCcEEEEeccCCCEEEEEEEEeCCC
Confidence                         1359999999888999999998854

>PRK06091 membrane protein FdrA; Validated

Probab=97.47  E-value=0.0011  Score=72.60  Aligned_cols=119  Identities=24%  Similarity=0.278  Sum_probs=87.7

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCC-----CCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG-----VNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK  375 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~-----a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~  375 (525)
                      .|+||+||-||+.+...++.+..+|+-....+-+|+.     +..-.+.++++.+.+||+++.|++.+-.   +.+.+.+
T Consensus       193 ~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kp---paE~v~~  269 (555)
T PRK06091        193 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKP---PAEAVRL  269 (555)
T ss_pred             CCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEec---CchHHHH
Confidence            6789999999999999999999999876666666655     2112378999999999999998876521   1244556


Q ss_pred             HHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785         376 GLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACK  430 (525)
Q Consensus       376 ~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~  430 (525)
                      .+.++++.  .+|||++...|.... +.   ++.|+-..  ++.++++.....+.
T Consensus       270 ~fl~aar~--~~KPVVvlk~Grs~~-g~---~q~GVi~a--~tleEl~~~A~~la  316 (555)
T PRK06091        270 KIINAMKA--TGKPVVALFLGYTPA-VA---RDENVWFA--STLDEAARLACLLS  316 (555)
T ss_pred             HHHHHHhh--CCCCEEEEEecCCch-hh---hcCCeEEe--CCHHHHHHHHHHHh
Confidence            77777776  589999988885322 21   66677555  88888887776554

>PRK14571 D-alanyl-alanine synthetase A; Provisional

Probab=97.39  E-value=0.00054  Score=70.13  Aligned_cols=80  Identities=19%  Similarity=0.265  Sum_probs=61.0

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      +.|||+|++..+++..    ..+.++| |+|+|+..-.++  +         ||.+..|.+++.+++++.+..       
T Consensus       104 ~~~ip~p~~~~~~~~~----~~~~l~~-P~vvKP~~g~~s--~---------Gv~~v~~~~el~~~~~~~~~~-------  160 (299)
T PRK14571        104 KGTVEIPDFVEIKEFM----KTSPLGY-PCVVKPRREGSS--I---------GVFICESDEEFQHALKEDLPR-------  160 (299)
T ss_pred             hcCCCCCCEEEEechh----hhhhcCC-CEEEecCCCCCc--C---------CEEEECCHHHHHHHHHHHHhh-------
Confidence            4589999999886533    2457897 999999644322  2         788888999998888776431       


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                            ...++||||++ ++|+.+++..+.
T Consensus       161 ------~~~vlVEeyI~-G~E~sv~vl~~~  183 (299)
T PRK14571        161 ------YGSVIVQEYIP-GREMTVSILETE  183 (299)
T ss_pred             ------CCcEEEEcccc-ceEEEEEEEcCC
Confidence                  13699999998 789999999874

>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

Probab=97.34  E-value=0.00034  Score=74.93  Aligned_cols=55  Identities=58%  Similarity=0.800  Sum_probs=46.3

Q ss_pred             HHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhHh
Q psy7785         470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFIL  524 (525)
Q Consensus       470 Av~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (525)
                      |...+++++++.+..|+|+++.|||++||++||+++|+++++++||+||++.||.
T Consensus       364 A~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~~~~~~~~~~~~l~~A~~~~v~  418 (422)
T PLN00124        364 ASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVK  418 (422)
T ss_pred             HHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHhCCCCeEEcCCHHHHHHHHHH
Confidence            3344455666545789999999999999999999999999999999999999974

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=97.27  E-value=0.0053  Score=61.58  Aligned_cols=124  Identities=18%  Similarity=0.247  Sum_probs=88.9

Q ss_pred             cCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCH-HHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHH
Q psy7785         300 MDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNE-ESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLV  378 (525)
Q Consensus       300 ~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~-~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~  378 (525)
                      ..|+||||+-||.+.--++-.+.+.|+-..--+=++|+.-. -.|.++|+.+.+||+.++++..---|. +.++.|...+
T Consensus       144 ~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG-~aEe~AA~~i  222 (293)
T COG0074         144 KPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGG-PAEEEAAEYI  222 (293)
T ss_pred             cCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCC-cHHHHHHHHH
Confidence            36899999999999999999999999977777888888554 349999999999999999886432122 2344444333


Q ss_pred             HHHHhcCCCCcEEEEeCCc--------------------chHHHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785         379 NACKSFKLSIPLVVRLEGT--------------------NVQEGKRILDESKLPLIFASDLDEAASLVNAC  429 (525)
Q Consensus       379 ~a~~~~~~~kPivv~~~g~--------------------~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l  429 (525)
                      +. ..  .+||+|.+..|.                    ..+.-.+.|+++|+++-  ++|.+-...+...
T Consensus       223 ~~-~~--~~KPVVa~iaG~tap~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~--etp~~l~~~l~~v  288 (293)
T COG0074         223 KA-NA--TRKPVVAYIAGRTAPEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVA--ETPAELGELLLEV  288 (293)
T ss_pred             HH-hc--cCCCEEEEEeccCCCccchhhhhhhhhcCCCccHHHHHHHHHHcCCeec--CCHHHHHHHHHHH
Confidence            33 21  459999876552                    12233567888899888  8887766655543

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=97.22  E-value=0.00057  Score=71.11  Aligned_cols=50  Identities=60%  Similarity=0.771  Sum_probs=42.5

Q ss_pred             HHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhHh
Q psy7785         475 NACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFIL  524 (525)
Q Consensus       475 ~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (525)
                      ++.++...--|+|+++.|||+++|||||+++|++++++++|++|+..++.
T Consensus       333 ~Al~e~~~~vPlVVRL~GtN~e~Gk~iL~esg~~i~~~~~l~~aa~k~v~  382 (387)
T COG0045         333 AALKEVGVNVPLVVRLEGTNVEEGKRILAESGLNIIAADDLDEAAEKAVE  382 (387)
T ss_pred             HHHHhcCCCCCEEEEcCCCCHHHHHHHHHHcCCceEecccHHHHHHHHHH
Confidence            34445312489999999999999999999999999999999999998874

>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional

Probab=97.22  E-value=0.00066  Score=72.28  Aligned_cols=44  Identities=20%  Similarity=0.249  Sum_probs=38.1

Q ss_pred             CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785         445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEG  492 (525)
Q Consensus       445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~  492 (525)
                      ++|+++|++|++||||+   .+++|.+||.+   +++++ .|||||+|.+.
T Consensus         3 l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~---~a~~i-~g~PvVvK~~~   49 (388)
T PRK00696          3 LHEYQAKELFAKYGVPVPRGIVATTPEEAVE---AAEEL-GGGVWVVKAQV   49 (388)
T ss_pred             CCHHHHHHHHHHcCCCCCCCeeeCCHHHHHH---HHHHc-CCCcEEEEEee
Confidence            46899999999999999   89999999998   56673 18999999963

>KOG1447|consensus

Probab=97.12  E-value=0.00089  Score=66.12  Aligned_cols=56  Identities=52%  Similarity=0.795  Sum_probs=47.5

Q ss_pred             HHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhHh
Q psy7785         469 EAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFIL  524 (525)
Q Consensus       469 eAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (525)
                      -|-..+.+++++....|+|+++.|||+++|++||.++|++.+-..|+|||++.|+.
T Consensus       354 IANGiv~A~~kl~LnVPlVVRLEGTNV~~A~~Ilk~SGLpI~tA~dLddAA~KAVa  409 (412)
T KOG1447|consen  354 IANGIVKACRKLELNVPLVVRLEGTNVQEAQKILKKSGLPITTAIDLDDAAKKAVA  409 (412)
T ss_pred             HhhHHHHHHHhhcCCCcEEEEEcCCCHHHHHHHHHhcCCceeeccchHHHHHHHhh
Confidence            34444446777645789999999999999999998899999999999999999874

>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103

Probab=97.07  E-value=0.002  Score=71.65  Aligned_cols=80  Identities=11%  Similarity=0.233  Sum_probs=62.6

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      +.|||||++..+.+.+++.++++++|  |+|+|+..-  +.|+         ||.++ .+.+++.++++.....      
T Consensus       307 ~aGIpVP~~~~~~~~~~~~~~~~~~G--~vVVKP~~G--~~G~---------Gv~v~v~~~~eL~~a~~~a~~~------  367 (547)
T TIGR03103       307 EAGLQVPEQQLAGNGEAVEAFLAEHG--AVVVKPVRG--EQGK---------GISVDVRTPDDLEAAIAKARQF------  367 (547)
T ss_pred             HcCcCCCCEEEECCHHHHHHHHHHhC--CEEEEECCC--CCCc---------CeEEecCCHHHHHHHHHHHHhc------
Confidence            79999999999999999999999997  599998533  2244         78774 5788888888776321      


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEE
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIV  125 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~  125 (525)
                             ...++||++++ +.|+.+.+.
T Consensus       368 -------~~~vlvEe~i~-G~d~Rv~Vi  387 (547)
T TIGR03103       368 -------CDRVLLERYVP-GEDLRLVVI  387 (547)
T ss_pred             -------CCcEEEEEecc-CCeEEEEEE
Confidence                   14699999997 678887665

Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.

>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional

Probab=97.05  E-value=0.0018  Score=67.70  Aligned_cols=91  Identities=11%  Similarity=0.145  Sum_probs=67.6

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccc--cCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAG--GRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~--~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ..|||+|+...  ++       +++++ ||+||+....|  +|           |+.++.|++|+...++++......  
T Consensus       136 ~aGI~~Pk~~~--~p-------~eId~-PVIVKp~~asG~~sr-----------G~f~a~s~eEl~~~a~~l~~~g~I--  192 (366)
T PRK13277        136 KAGIPYPKLFK--DP-------EEIDR-PVIVKLPEAKRRLER-----------GFFTASSYEDFYEKSEELIKAGVI--  192 (366)
T ss_pred             HcCCCCceeec--Cc-------cccCc-cEEEEECCCCCcccc-----------CeEeeCCHHHHHHHHHhhhhcCcc--
Confidence            69999998765  33       36676 99999976654  33           788888999999888887643221  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                          +.......+|||++. |.|+++-+..||.. |-+.++|
T Consensus       193 ----~~~~~~~~iIQEyI~-G~ey~~d~F~s~l~-g~ve~l~  228 (366)
T PRK13277        193 ----DREDLKNARIEEYVI-GAHFNFNYFYSPIR-DRLELLG  228 (366)
T ss_pred             ----cccccccceeEeccC-CCEEEEEEEEeccC-CcEEEEE
Confidence                112247789999997 78999999999865 5566666

>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.0039  Score=64.63  Aligned_cols=85  Identities=16%  Similarity=0.286  Sum_probs=61.8

Q ss_pred             hCCCCCCCccccCCHHHHHHH-HHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcc-cHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNI-LKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQ-DIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~-a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~e-ea~~a~~~l~~~~~~~~   96 (525)
                      +.|||+|++.++.+++++... .+.+|| |+|+|+-.-.+  |+         ||.+..+.+ ++.+..+.+...     
T Consensus       129 ~~~ipvP~T~i~~~~~~~~~~~~~~~g~-pvVlKp~~Gs~--G~---------gV~~v~~~d~~l~~~~e~~~~~-----  191 (318)
T COG0189         129 KAGIPVPPTLITRDPDEAAEFVAEHLGF-PVVLKPLDGSG--GR---------GVFLVEDADPELLSLLETLTQE-----  191 (318)
T ss_pred             hcCCCCCCEEEEcCHHHHHHHHHHhcCC-CEEEeeCCCCC--cc---------ceEEecCCChhHHHHHHHHhcc-----
Confidence            789999999999998666554 555676 99999853333  34         788888877 777777776432     


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQD  127 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D  127 (525)
                           +  -+-++||+|++.....+..+...
T Consensus       192 -----~--~~~~ivQeyi~~~~~~~rrivv~  215 (318)
T COG0189         192 -----G--RKLIIVQEYIPKAKRDDRRVLVG  215 (318)
T ss_pred             -----c--cceEehhhhcCcccCCcEEEEEe
Confidence                 1  24589999998776666666554

>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]

Probab=96.94  E-value=0.013  Score=62.02  Aligned_cols=117  Identities=20%  Similarity=0.224  Sum_probs=72.3

Q ss_pred             HHHHhcCCCccEEEEEec-cccc---Ch----H-HHHHHHHHHHHhcCCCCcEEEEeCCcc-h--HHHHHHHhhCCCCcc
Q psy7785         347 FRIISSDSNVKCILVNVF-GGIV---NC----A-TIAKGLVNACKSFKLSIPLVVRLEGTN-V--QEGKRILDESKLPLI  414 (525)
Q Consensus       347 l~~ll~dp~vd~vlv~~~-~~~~---~~----~-~ia~~i~~a~~~~~~~kPivv~~~g~~-~--~~~~~~L~~~Gvpvf  414 (525)
                      ...|.++|.+.-+++.-. +|+.   .+    . .-.+.|++.+++.  +.-++  ..|++ +  .--...|+++|||+|
T Consensus        16 A~~la~s~~v~~~~~apgN~G~a~~~~~~~~~~~~~~~~lv~fA~~~--~idl~--vVGPE~pL~~GvvD~l~~~Gi~vF   91 (428)
T COG0151          16 AWKLAQSPLVLYVYVAPGNPGTALEAYLVNIEIDTDHEALVAFAKEK--NVDLV--VVGPEAPLVAGVVDALRAAGIPVF   91 (428)
T ss_pred             HHHHhcCCceeEEEEeCCCCccchhhhhccCccccCHHHHHHHHHHc--CCCEE--EECCcHHHhhhhHHHHHHCCCcee
Confidence            344556777776666321 1221   00    1 1246777777762  22222  23432 1  112568999999999


Q ss_pred             ccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEe
Q psy7785         415 FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLE  491 (525)
Q Consensus       415 ~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~  491 (525)
                         .|..++..|-.                 +-.-+|+++..||||.   ...++.++|.+.   .++  .|.|+|+|..
T Consensus        92 ---GPsk~AA~lE~-----------------SK~faK~fm~k~~IPta~y~~f~~~e~a~ay---i~~--~g~piVVKad  146 (428)
T COG0151          92 ---GPTKAAAQLEG-----------------SKAFAKDFMKKYGIPTAEYEVFTDPEEAKAY---IDE--KGAPIVVKAD  146 (428)
T ss_pred             ---CcCHHHHHHHh-----------------hHHHHHHHHHHcCCCcccccccCCHHHHHHH---HHH--cCCCEEEecc
Confidence               55555544421                 2336899999999998   777799999984   455  3999999985


Q ss_pred             c
Q psy7785         492 G  492 (525)
Q Consensus       492 ~  492 (525)
                      |
T Consensus       147 G  147 (428)
T COG0151         147 G  147 (428)
T ss_pred             c
Confidence            5

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit

Probab=96.89  E-value=0.0019  Score=68.73  Aligned_cols=42  Identities=21%  Similarity=0.402  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCC-CcEEEEEe
Q psy7785         445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLS-IPLVVRLE  491 (525)
Q Consensus       445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G-~PVVlKi~  491 (525)
                      ++|+++|++|++||||+   .++++.+|+.+   +++++  | ||||+|.+
T Consensus         3 L~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~---~~~~i--g~~PvVvK~~   48 (386)
T TIGR01016         3 LHEYQAKQIFAKYGIPVPRGYVATSVEEAEE---IAAKL--GAGPVVVKAQ   48 (386)
T ss_pred             CcHHHHHHHHHHcCCCCCCceeeCCHHHHHH---HHHHh--CCCcEEEEec
Confidence            46899999999999999   88899999888   56675  8 99999997

This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G

>PRK14046 malate--CoA ligase subunit beta; Provisional

Probab=96.80  E-value=0.0016  Score=69.38  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=37.4

Q ss_pred             CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCc-EEEEEec
Q psy7785         445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIP-LVVRLEG  492 (525)
Q Consensus       445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~P-VVlKi~~  492 (525)
                      +.|+++|+||++||||+   .+++|.+||.+   +++++  ||| +|+|++.
T Consensus         3 l~E~eak~lL~~yGIpvp~~~~~~~~~ea~~---~a~~l--g~p~~VvK~qv   49 (392)
T PRK14046          3 IHEYQAKELLASFGVAVPRGALAYSPEQAVY---RAREL--GGWHWVVKAQI   49 (392)
T ss_pred             CcHHHHHHHHHHcCCCCCCceEECCHHHHHH---HHHHc--CCCcEEEEeee
Confidence            46899999999999999   89999999998   57775  895 5999864

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=96.79  E-value=0.0068  Score=65.76  Aligned_cols=99  Identities=22%  Similarity=0.351  Sum_probs=76.6

Q ss_pred             hCCCCCCCccc--cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVC--LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~--~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      +.|+|+.+++.  ..+.+++...++++|| ||.+|+-  +||=||         |.++..+++|+.++++.-......  
T Consensus       125 ~AgVp~VPG~~g~~qd~~~~~~~A~eiGy-PVlIKAs--aGGGGK---------GMRvv~~~~e~~e~l~sarrEA~a--  190 (645)
T COG4770         125 EAGVPTVPGYHGPIQDAAELVAIAEEIGY-PVLIKAS--AGGGGK---------GMRVVETPEEFAEALESARREAKA--  190 (645)
T ss_pred             HcCCCccCCCCCcccCHHHHHHHHHhcCC-cEEEEec--cCCCCC---------ceEeecCHHHHHHHHHHHHHHHHh--
Confidence            79999887765  5789999999999998 9999995  444467         889999998888887766543221  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                         ..|  -..++||+|+...+=+-+-+.-|..  |-++-+|
T Consensus       191 ---sFG--ddrv~iEkyl~~PRHIEiQV~aD~H--GNvv~Lg  225 (645)
T COG4770         191 ---SFG--DDRVFIEKYLDKPRHIEIQVFADQH--GNVVHLG  225 (645)
T ss_pred             ---hcC--CceEehhhhcCCCceEEEEEEecCC--CCEEEee
Confidence               123  3689999999877878888888875  5677766

>PLN02235 ATP citrate (pro-S)-lyase

Probab=96.74  E-value=0.0022  Score=68.28  Aligned_cols=42  Identities=21%  Similarity=0.262  Sum_probs=39.5

Q ss_pred             CCcEEEEEecCChHHHHHhhh----hCCCCceecc---CHHHHHHHhHh
Q psy7785         483 SIPLVVRLEGTNVQEGKRILD----ESKLPLIFAS---DLDEAANWFIL  524 (525)
Q Consensus       483 G~PVVlKi~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~  524 (525)
                      ..|+|+++.|||++||++||+    ++|+++++++   +|+|||+.|+.
T Consensus       369 ~vpivVRl~GtN~eeG~~il~e~~~~~gl~i~~~~~~~~m~~a~~~av~  417 (423)
T PLN02235        369 RMHIFVRRGGPNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAID  417 (423)
T ss_pred             CccEEEECCCCCHHHHHHHHHHhHHhcCCcEEEeCCCCCHHHHHHHHHh
Confidence            579999999999999999999    7999999999   99999999983

>KOG0238|consensus

Probab=96.52  E-value=0.009  Score=63.94  Aligned_cols=101  Identities=18%  Similarity=0.262  Sum_probs=76.7

Q ss_pred             hhhCCCCCCCc--cccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785          17 KPVSTVHSTDK--VCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        17 k~~~GIpvp~~--~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~   94 (525)
                      +++.|+|+.++  ....|.+++.+.+.++|| ||.+|+.  +||=||         |.++..+++|.++.++.-..... 
T Consensus       119 m~~AgVp~vpG~~g~~qs~e~~~~~a~eIgy-PvMiKa~--~GGGGk---------GMria~~~~ef~~~~~~ak~Ea~-  185 (670)
T KOG0238|consen  119 MKAAGVPLVPGYHGEDQSDEEAKKVAREIGY-PVMIKAT--AGGGGK---------GMRIAWSEEEFEEGLESAKQEAA-  185 (670)
T ss_pred             HHhcCCccccCcccccccHHHHHHHHHhcCC-cEEEEec--cCCCCc---------ceEeecChHHHHHHHHHHHHHHH-
Confidence            33899998665  567889999999999998 9999995  444467         78999999888877766543322 


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                            +..-..++|+|+|++..+-+-+-+.-|. | |-.+-++
T Consensus       186 ------~sFGdd~~llEkfi~npRHiEvQv~gD~-h-Gnav~l~  221 (670)
T KOG0238|consen  186 ------KSFGDDGMLLEKFIDNPRHIEVQVFGDK-H-GNAVHLG  221 (670)
T ss_pred             ------hhcCcchhhHHHhccCCceEEEEEEecC-C-CcEEEec
Confidence                  1122478999999988888888888786 4 6777777

>PRK06849 hypothetical protein; Provisional

Probab=96.48  E-value=0.011  Score=62.83  Aligned_cols=82  Identities=12%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ..|||+|++..+++.+++.++..+. +| |+|+|+....++           .||.+..+.+    ..+.+.   .    
T Consensus       126 ~~GipvP~t~~v~~~~~l~~~~~~~~~~-P~vlKP~~~~~~-----------~~v~~~~~~~----~l~~~~---~----  182 (389)
T PRK06849        126 SLGLSVPKTYLITDPEAIRNFMFKTPHT-PYVLKPIYSRFV-----------RRVDLLPKEA----ALKELP---I----  182 (389)
T ss_pred             HcCCCCCCEEEeCCHHHHHHHhhcCCCC-cEEEEeCcccCC-----------CeEEEecCHH----Hhcccc---c----
Confidence            7999999999999999998888776 76 999999543222           3566644411    111110   0    


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                          . ..+.++|||++++......++.+|+
T Consensus       183 ----~-~~~~~ivQe~I~G~e~~~~~~~~~G  208 (389)
T PRK06849        183 ----S-KDNPWVMQEFIQGKEYCSYSIVRSG  208 (389)
T ss_pred             ----C-CCCCeEEEEEecCCeEEEEEEEECC
Confidence                0 1245899999995443455555553

>COG0439 AccC Biotin carboxylase [Lipid metabolism]

Probab=96.38  E-value=0.025  Score=61.12  Aligned_cols=161  Identities=13%  Similarity=0.191  Sum_probs=93.1

Q ss_pred             EEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhc
Q psy7785         305 GCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF  384 (525)
Q Consensus       305 aIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~  384 (525)
                      -+|.|.|..++-..=+|.+.|+++   +=+...++.+.    +-..++|..   +-+. +....+.......++.++.. 
T Consensus         5 iLIanrGeia~ri~ra~~~lGi~t---vav~s~~d~~~----~~~~~adea---v~i~-~~~~~~syl~i~~ii~~a~~-   72 (449)
T COG0439           5 ILIANRGEIAVRIIRACRELGIET---VAVYSEADADA----LHVALADEA---VCIG-PAPSADSYLNIDAIIAAAEE-   72 (449)
T ss_pred             EEEecCchhHHHHHHHHHHhCCeE---EEEeccccccc----hhhhhCceE---EEcC-CccchhhhhhHHHHHHHHHh-
Confidence            467899999999999999999976   33334333332    223334431   2222 11122222333445555544 


Q ss_pred             CCCCcEEEEeCC--cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785         385 KLSIPLVVRLEG--TNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-  461 (525)
Q Consensus       385 ~~~kPivv~~~g--~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-  461 (525)
                       ...-.+..-.|  .......+...+.|+ .|.-++ .++++.+.                  +-..+++++.++|||+ 
T Consensus        73 -~gadai~pGygflsen~~fae~~~~~gl-~fiGP~-~~~i~~mg------------------dK~~ar~~~~~aGVP~v  131 (449)
T COG0439          73 -TGADAIHPGYGFLSENAAFAEACAEAGL-TFIGPS-AEAIRRMG------------------DKITARRLMAKAGVPVV  131 (449)
T ss_pred             -cCCceEcccchhhhCCHHHHHHHHHcCC-eeeCcC-HHHHHHhh------------------hHHHHHHHHHHcCCCcC
Confidence             22212211122  223455667788885 342222 22333332                  1236899999999999 


Q ss_pred             ----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785         462 ----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD  503 (525)
Q Consensus       462 ----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~  503 (525)
                          ....+.+|+.+   .+++  +||||++|..+.+-..|-++.+
T Consensus       132 pgs~~~~~~~ee~~~---~a~~--iGyPVivKa~~GgGg~G~r~v~  172 (449)
T COG0439         132 PGSDGAVADNEEALA---IAEE--IGYPVIVKAAAGGGGRGMRVVR  172 (449)
T ss_pred             CCCCCCcCCHHHHHH---HHHH--cCCCEEEEECCCCCcccEEEEC
Confidence                22677788888   5777  4999999999888777766544

>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []

Probab=96.30  E-value=0.0097  Score=57.67  Aligned_cols=40  Identities=30%  Similarity=0.484  Sum_probs=31.7

Q ss_pred             CHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCC-cEEEEE
Q psy7785         446 NVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSI-PLVVRL  490 (525)
Q Consensus       446 ~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~-PVVlKi  490 (525)
                      .|+++|+||+.|||||   .++.|++||..   +++++  |. ++|+|.
T Consensus         3 ~EyqaK~ll~~~gi~vp~g~~a~s~eea~~---~~~~l--~~~~~VvKa   46 (202)
T PF08442_consen    3 HEYQAKELLRKYGIPVPRGVVATSPEEARE---AAKEL--GGKPLVVKA   46 (202)
T ss_dssp             -HHHHHHHHHCTT----SEEEESSHHHHHH---HHHHH--TTSSEEEEE
T ss_pred             hHHHHHHHHHHcCCCCCCeeecCCHHHHHH---HHHHh--CCCcEEEEE
Confidence            5899999999999999   99999999998   56676  55 579998

They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....

>PRK07178 pyruvate carboxylase subunit A; Validated

Probab=96.26  E-value=0.03  Score=61.21  Aligned_cols=158  Identities=16%  Similarity=0.155  Sum_probs=86.7

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK  382 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~  382 (525)
                      +|.|+ |+|-.++..+-+|.+.|...   +=+..+.+.  .  +...-..|    -.+. +..+......-.+.|.++++
T Consensus         4 kvLi~-~~geia~~ii~a~~~~Gi~~---v~v~~~~d~--~--a~~~~~aD----~~~~-i~~~~~~~y~d~~~i~~~a~   70 (472)
T PRK07178          4 KILIA-NRGEIAVRIVRACAEMGIRS---VAIYSEADR--H--ALHVKRAD----EAYS-IGADPLAGYLNPRRLVNLAV   70 (472)
T ss_pred             EEEEE-CCcHHHHHHHHHHHHcCCeE---EEEeCCCcc--C--CccHhhCC----EEEE-cCCCchhhhcCHHHHHHHHH
Confidence            56665 89999999999999999852   111111111  0  01111122    1111 11111111111235566665


Q ss_pred             hcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCC
Q psy7785         383 SFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLP  460 (525)
Q Consensus       383 ~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIp  460 (525)
                      +  .+.-.+....|.  ......+.+++.|+|++  ....+++..+.                  +-...+++|.++|||
T Consensus        71 ~--~~~D~I~pg~g~lse~~~~a~~~e~~Gi~~i--gps~~~i~~~~------------------DK~~~r~~l~~~GIp  128 (472)
T PRK07178         71 E--TGCDALHPGYGFLSENAELAEICAERGIKFI--GPSAEVIRRMG------------------DKTEARRAMIKAGVP  128 (472)
T ss_pred             H--HCCCEEEeCCCCcccCHHHHHHHHHcCCCcc--CCCHHHHHHhc------------------CHHHHHHHHHHCCCC
Confidence            5  233344332231  12334467788899876  44444444432                  234689999999999


Q ss_pred             e---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785         461 L---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR  500 (525)
Q Consensus       461 v---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~  500 (525)
                      +   .  ...+.+++.+   .++++  |||||+|-....-..|.+
T Consensus       129 ~pp~~~~~~~~~~e~~~---~~~~i--gyPvvvKp~~ggGg~Gv~  168 (472)
T PRK07178        129 VTPGSEGNLADLDEALA---EAERI--GYPVMLKATSGGGGRGIR  168 (472)
T ss_pred             CCCCcCcCCCCHHHHHH---HHHHc--CCcEEEEeCCCCCCCCce
Confidence            8   2  3678888877   45674  999999997765443333

>PRK13789 phosphoribosylamine--glycine ligase; Provisional

Probab=96.23  E-value=0.091  Score=56.76  Aligned_cols=66  Identities=20%  Similarity=0.291  Sum_probs=47.0

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...+++.|+|+|  . |......+.                 .+-..+|++|+.+|||+   ..+++.+++.+   .+++
T Consensus        85 ad~~~~~Gip~~--G-p~~~aa~le-----------------~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~---~~~~  141 (426)
T PRK13789         85 ADWAAELGIPCF--G-PDSYCAQVE-----------------GSKHFAKSLMKEAKIPTASYKTFTEYSSSLS---YLES  141 (426)
T ss_pred             HHHHHHcCCCcC--C-CHHHHHHHH-----------------cCHHHHHHHHHHcCCCCCCeEeeCCHHHHHH---HHHh
Confidence            356788999988  3 322221111                 12346899999999998   77889999877   4556


Q ss_pred             cCCCCcEEEEEecC
Q psy7785         480 FKLSIPLVVRLEGT  493 (525)
Q Consensus       480 ~~~G~PVVlKi~~~  493 (525)
                      +  |||+|+|-.+.
T Consensus       142 ~--~~PvVVKp~~~  153 (426)
T PRK13789        142 E--MLPIVIKADGL  153 (426)
T ss_pred             c--CCCEEEEeCCC
Confidence            4  99999999773

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=96.23  E-value=0.037  Score=60.06  Aligned_cols=153  Identities=12%  Similarity=0.132  Sum_probs=81.5

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC  381 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~  381 (525)
                      ++|+|+ |+|=.++..+-++.+.|...-- +|.    .++..  +...-+.|.   .+.+ .+........-.+.|++++
T Consensus         3 kkili~-g~g~~~~~~~~aa~~lG~~vv~-~~~----~~d~~--a~~~~~aD~---~~~~-~~~~~~~~y~d~~~l~~~a   70 (449)
T TIGR00514         3 DKILIA-NRGEIALRILRACKELGIKTVA-VHS----TADRD--ALHVLLADE---AVCI-GPAPSAKSYLNIPNIISAA   70 (449)
T ss_pred             ceEEEe-CCCHHHHHHHHHHHHcCCeEEE-EEC----hhhhc--ccccccCCE---EEEc-CCCCchhchhCHHHHHHHH
Confidence            378887 7888899999999999986310 111    00100  000111221   1111 0110000011123556655


Q ss_pred             HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785         382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL  459 (525)
Q Consensus       382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI  459 (525)
                      ++.  +.-+++...|.  ......+.+++.|+|++  ....+++..+                  .+-...+++|+++||
T Consensus        71 ~~~--~id~I~pg~g~~se~~~~a~~~e~~Gi~~~--g~~~~~~~~~------------------~DK~~~r~~l~~~gi  128 (449)
T TIGR00514        71 EIT--GADAIHPGYGFLSENANFAEQCERSGFTFI--GPSAESIRLM------------------GDKVSAIETMKKAGV  128 (449)
T ss_pred             HHh--CCCEEEeCCCccccCHHHHHHHHHCCCcEE--CcCHHHHHHh------------------CCHHHHHHHHHHCCC
Confidence            542  22223222221  11223457788899877  4434444332                  123468999999999


Q ss_pred             Ce-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785         460 PL-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGT  493 (525)
Q Consensus       460 pv-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~  493 (525)
                      |+     .++.+.+++.+   .++++  |||||+|-...
T Consensus       129 p~pp~~~~~~~~~~e~~~---~~~~i--g~PvvvKP~~g  162 (449)
T TIGR00514       129 PCVPGSDGLVEDEEENVR---IAKRI--GYPVIIKATAG  162 (449)
T ss_pred             CCCCCcccCcCCHHHHHH---HHHHh--CCCEEEEeCCC
Confidence            98     25678888877   45564  99999997654

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

>PRK13790 phosphoribosylamine--glycine ligase; Provisional

Probab=96.08  E-value=0.065  Score=56.93  Aligned_cols=65  Identities=18%  Similarity=0.301  Sum_probs=47.2

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...|++.|+|+|  ....++++..                  .+-..+|++|+.+|||+   ..+.+.+++.+   .+++
T Consensus        44 ~d~l~~~Gi~~~--g~s~~a~~l~------------------~dK~~~k~~l~~~gIptp~~~~~~~~~ea~~---~~~~  100 (379)
T PRK13790         44 ADILRANGFKVF--GPNKQAAQIE------------------GSKLFAKKIMEKYNIPTADYKEVERKKDALT---YIEN  100 (379)
T ss_pred             HHHHHhCCCcEE--CCCHHHHHHh------------------CCHHHHHHHHHHCCCCCCCEEEECCHHHHHH---HHHh
Confidence            457888999988  4433433221                  12346899999999998   77888888877   3456


Q ss_pred             cCCCCcEEEEEec
Q psy7785         480 FKLSIPLVVRLEG  492 (525)
Q Consensus       480 ~~~G~PVVlKi~~  492 (525)
                      +  |||+|+|-.+
T Consensus       101 ~--g~PvVvKp~~  111 (379)
T PRK13790        101 C--ELPVVVKKDG  111 (379)
T ss_pred             c--CCCEEEEeCC
Confidence            3  9999999865

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=95.95  E-value=0.16  Score=53.96  Aligned_cols=143  Identities=16%  Similarity=0.126  Sum_probs=77.0

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK  382 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~  382 (525)
                      +|+|+. +|-.|.+.+-++.+.|..+. .+|...+.....+        .|.    .++   ....+.    +.+.+.++
T Consensus        14 ~ilIiG-~g~~~~~~~~a~~~~G~~v~-~~~~~~~~~~~~~--------ad~----~~~---~~~~d~----~~l~~~~~   72 (395)
T PRK09288         14 RVMLLG-SGELGKEVAIEAQRLGVEVI-AVDRYANAPAMQV--------AHR----SHV---IDMLDG----DALRAVIE   72 (395)
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCEEE-EEeCCCCCchHHh--------hhh----eEE---CCCCCH----HHHHHHHH
Confidence            677774 55567777778888887532 2232222111111        111    111   111222    34455555


Q ss_pred             hcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHH-HHCCCCe
Q psy7785         383 SFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL-DESKLPL  461 (525)
Q Consensus       383 ~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL-~ayGIpv  461 (525)
                      +.  +.-.++.....-.......+.+.|+|++  .+++. ++...                  +-...+++| +.+|||+
T Consensus        73 ~~--~id~vi~~~e~~~~~~~~~l~~~g~~~~--~~~~a-~~~~~------------------dK~~~k~~l~~~~gip~  129 (395)
T PRK09288         73 RE--KPDYIVPEIEAIATDALVELEKEGFNVV--PTARA-TRLTM------------------NREGIRRLAAEELGLPT  129 (395)
T ss_pred             Hh--CCCEEEEeeCcCCHHHHHHHHhcCCeeC--CCHHH-HHHHh------------------CHHHHHHHHHHhCCCCC
Confidence            42  1112332222212234556777899988  66543 22211                  123467777 5799999


Q ss_pred             ---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         462 ---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       462 ---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                         ..+.|.+++.+   .+.++  |||||+|-.+..
T Consensus       130 p~~~~~~s~~~l~~---~~~~~--g~P~VvKP~~g~  160 (395)
T PRK09288        130 SPYRFADSLEELRA---AVEEI--GYPCVVKPVMSS  160 (395)
T ss_pred             CCceEECCHHHHHH---HHHhc--CCCEEEEeCCCc
Confidence               88899998877   34564  999999976543

>PRK08654 pyruvate carboxylase subunit A; Validated

Probab=95.86  E-value=0.045  Score=60.34  Aligned_cols=157  Identities=13%  Similarity=0.167  Sum_probs=86.4

Q ss_pred             EEecchhHHHHHHHHHHHcCCCC-CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-ccChHHHHHHHHHHHHh
Q psy7785         306 CLVNGAGLAMATMDIIKLHGGEP-ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-IVNCATIAKGLVNACKS  383 (525)
Q Consensus       306 IitnsGG~gvlaaD~~~~~Gl~~-aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~~~~~~ia~~i~~a~~~  383 (525)
                      .|.|.|-.++..+-+|.+.|.+. .  ++...+..      +...-+.|    -.++ +.++ ........+.|++++++
T Consensus         6 LIan~Geia~~iiraar~lGi~~V~--v~s~~d~~------a~~~~~AD----~~~~-i~~~~~~~syld~~~i~~~a~~   72 (499)
T PRK08654          6 LIANRGEIAIRVMRACRELGIKTVA--VYSEADKN------ALFVKYAD----EAYP-IGPAPPSKSYLNIERIIDVAKK   72 (499)
T ss_pred             EEECCcHHHHHHHHHHHHcCCeEEE--Eecccccc------ccchhhCC----EEEE-cCCCCcccCccCHHHHHHHHHH
Confidence            46788889999999999999862 1  11111111      11111122    2222 1111 11111113456666665


Q ss_pred             cCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe
Q psy7785         384 FKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL  461 (525)
Q Consensus       384 ~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv  461 (525)
                      .  +.-.+....|.  ......+.+++.|++++  ....+++..+.                  +-..+++++.++|||+
T Consensus        73 ~--~~daI~pg~gflsE~~~~a~~~e~~gi~~i--Gps~~~i~~~~------------------DK~~~k~~l~~~GVpv  130 (499)
T PRK08654         73 A--GADAIHPGYGFLAENPEFAKACEKAGIVFI--GPSSDVIEAMG------------------SKINAKKLMKKAGVPV  130 (499)
T ss_pred             h--CCCEEEECCCccccCHHHHHHHHHCCCcEE--CCCHHHHHHhC------------------CHHHHHHHHHHcCcCC
Confidence            2  22122222231  22344567888999877  43344444432                  2346899999999998


Q ss_pred             ---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhh
Q psy7785         462 ---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL  502 (525)
Q Consensus       462 ---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~  502 (525)
                         .  ...+.+++.+   .++++  ||||++|-....-..|.+++
T Consensus       131 ~p~~~~~v~~~~e~~~---~a~~i--gyPvvIKp~~GgGG~Gv~iv  171 (499)
T PRK08654        131 LPGTEEGIEDIEEAKE---IAEEI--GYPVIIKASAGGGGIGMRVV  171 (499)
T ss_pred             CCCcCcCCCCHHHHHH---HHHHh--CCCEEEEeCCCCCCCeEEEe
Confidence               2  2678888877   46674  99999998776544444333

>COG3919 Predicted ATP-grasp enzyme [General function prediction only]

Probab=95.84  E-value=0.014  Score=58.82  Aligned_cols=103  Identities=15%  Similarity=0.227  Sum_probs=63.5

Q ss_pred             HhhhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccc
Q psy7785          14 YLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL   93 (525)
Q Consensus        14 ~~~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~   93 (525)
                      |....+||+|.|++..++|..++  .+.++-| ||++|+..- ++++   |... + -+....+.||.+.++.+-... +
T Consensus       119 Y~ra~elgl~~P~Ty~v~S~~d~--~~~el~F-PvILKP~mg-g~~~---~~ar-a-Ka~~a~d~ee~k~a~~~a~ee-i  188 (415)
T COG3919         119 YNRAEELGLPYPKTYLVNSEIDT--LVDELTF-PVILKPGMG-GSVH---FEAR-A-KAFTAADNEEMKLALHRAYEE-I  188 (415)
T ss_pred             HHHHHHhCCCCcceEEecchhhh--hhhheee-eEEecCCCC-Ccce---eehh-h-heeeccCHHHHHHHHHHHHHh-c
Confidence            33334899999999999975554  5667887 999998522 1111   1110 1 133445778877777765432 1


Q ss_pred             ccccCCCCCcccCeEEEEeeeCCceeEEEE--EEEcCCCCccEEEec
Q psy7785          94 ITKQTPKTGINVNKVMVAKSVNITRETYFC--IVQDRLHNGPVVIIS  138 (525)
Q Consensus        94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vg--v~~D~~f~gpvi~~g  138 (525)
                              |  ...|+||+|+|+|-|=-++  ..-|..  -|+.+|.
T Consensus       189 --------g--pDnvvvQe~IPGGgE~qfsyaAlw~~g--~pvaeft  223 (415)
T COG3919         189 --------G--PDNVVVQEFIPGGGENQFSYAALWDKG--HPVAEFT  223 (415)
T ss_pred             --------C--CCceEEEEecCCCCcccchHHHHHhCC--Cchhhhh
Confidence                    2  3689999999988775443  233432  3665554

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=95.74  E-value=0.14  Score=53.93  Aligned_cols=143  Identities=17%  Similarity=0.131  Sum_probs=76.6

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK  382 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~  382 (525)
                      +|+|+. ||-.|.+.+.++.+.|..+ -.+|...++..      ..  ..|    -.++.   ...+.    +.+.+.++
T Consensus         1 kililG-~g~~~~~l~~aa~~~G~~v-~~~d~~~~~~~------~~--~ad----~~~~~---~~~d~----~~l~~~~~   59 (380)
T TIGR01142         1 RVLLLG-SGELGKEVAIEAQRLGVEV-IAVDRYANAPA------MQ--VAH----RSYVI---NMLDG----DALRAVIE   59 (380)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCEE-EEEeCCCCCch------hh--hCc----eEEEc---CCCCH----HHHHHHHH
Confidence            467776 5668888899999999852 11122111111      11  111    11211   11222    33444444


Q ss_pred             hcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHH-HHHCCCCe
Q psy7785         383 SFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRI-LDESKLPL  461 (525)
Q Consensus       383 ~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~L-L~ayGIpv  461 (525)
                      +.  +.-.++.....-.......+++.|+|++  .+++. +....                  +-...+++ ++++|||+
T Consensus        60 ~~--~id~v~~~~e~v~~~~~~~l~~~g~~~~--~~~~~-~~~~~------------------dK~~~~~~~~~~~gip~  116 (380)
T TIGR01142        60 RE--KPDYIVPEIEAIATDALFELEKEGYFVV--PNARA-TKLTM------------------NREGIRRLAAEELGLPT  116 (380)
T ss_pred             Hh--CCCEEEeccCccCHHHHHHHHhcCCeeC--CCHHH-HHHhh------------------CHHHHHHHHHHHCCCCC
Confidence            32  2223322211112233556778899888  66543 22111                  11235666 48899999


Q ss_pred             ---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         462 ---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       462 ---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                         ..+.+.+++.+   +++++  |||+|+|=....
T Consensus       117 p~~~~~~~~~~~~~---~~~~~--g~P~VvKP~~g~  147 (380)
T TIGR01142       117 SRYMFADSLDELRE---AVEKI--GYPCVVKPVMSS  147 (380)
T ss_pred             CCceEeCCHHHHHH---HHHHc--CCCEEEEECCCc
Confidence               77888888766   45564  999999987643

This enzyme is an alternative to PurN (TIGR00639)

>KOG0370|consensus

Probab=95.74  E-value=0.0065  Score=68.99  Aligned_cols=132  Identities=17%  Similarity=0.250  Sum_probs=95.9

Q ss_pred             hhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785          16 VKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        16 ~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~   95 (525)
                      +.++-+.++.++..+++.|||.++++++|| ||++.+-...||=|.           .++.+.+|+.+.+..-+..    
T Consensus       505 am~ei~e~ia~s~a~~sie~al~aae~l~y-pvivRaayalgglgS-----------gfa~n~eeL~~l~~~a~a~----  568 (1435)
T KOG0370|consen  505 ALNEINEKIAPSEAVSTIEEALEAAERLGY-PVIVRAAYALGGLGS-----------GFANNEEELQDLAAQALAL----  568 (1435)
T ss_pred             HHHhhcccccchhhHhHHHHHHHHHHhcCc-HHHHHHHHHhcCccc-----------cccccHHHHHHHHhhcccc----
Confidence            344789999999999999999999999997 999987655554332           2566777777666554332    


Q ss_pred             ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCccccccc---ccCCCeEEEEecCCCCCCCHHH-
Q psy7785          96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVA---AKTPHLVKTIPIDVHQGITESL-  171 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~---~~~~~~~~~~~l~p~~~l~~~~-  171 (525)
                               -.++|||+.+.+++|.-.-+.||..  +-+|.+.+     .|+++   -++-|+   +.+.|.+.++.++ 
T Consensus       569 ---------s~QilvekSlkGwkevEyevvrDa~--~nciTvcn-----men~DplgihtGdS---iVvapsqtlsd~ey  629 (1435)
T KOG0370|consen  569 ---------SPQILVEKSLKGWKEVEYEVVRDAY--DNCITVCN-----MENFDPLGIHTGDS---IVVAPSQTLSDEEY  629 (1435)
T ss_pred             ---------CceeeehhhhccccceEEEEEeccc--cchhhhcC-----CcccCcceeeccce---EEEeeccccChHHH
Confidence                     3679999999999999999999985  45777764     34443   223343   4568888888865 


Q ss_pred             ------HHHHHHHcCCC
Q psy7785         172 ------AQDIADFLEFQ  182 (525)
Q Consensus       172 ------a~~~~~~l~~~  182 (525)
                            |...++.||+-
T Consensus       630 ~mlrttaikVirhlgvv  646 (1435)
T KOG0370|consen  630 QMLRTTAIKVIRHLGVV  646 (1435)
T ss_pred             HHHHhcchhheeccCCc
Confidence                  44566777754

>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional

Probab=95.73  E-value=0.062  Score=58.70  Aligned_cols=153  Identities=11%  Similarity=0.114  Sum_probs=83.7

Q ss_pred             EEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhc
Q psy7785         305 GCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF  384 (525)
Q Consensus       305 aIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~  384 (525)
                      -.|.|+|-.++..+-++.+.|...   +=+..+.+.+..  ...  ..|    -.+...+........-.+.|++++++ 
T Consensus         8 vLi~~~geia~~ii~aa~~lG~~~---v~~~s~~d~~~~--~~~--~aD----~~~~i~p~~~~~~y~d~~~i~~~a~~-   75 (467)
T PRK12833          8 VLVANRGEIAVRIIRAARELGMRT---VAACSDADRDSL--AAR--MAD----EAVHIGPSHAAKSYLNPAAILAAARQ-   75 (467)
T ss_pred             EEEECCcHHHHHHHHHHHHcCCeE---EEEECCCCCCCh--hHH--hCC----EEEecCCCCccccccCHHHHHHHHHH-
Confidence            457788889999999999999852   111111111100  111  122    22211111111111112456666665 


Q ss_pred             CCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785         385 KLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-  461 (525)
Q Consensus       385 ~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-  461 (525)
                       .+.-.+....|.  +.....+.+.+.|+++.  ....+++..+.                  +-...+++|.++|||+ 
T Consensus        76 -~~~daI~pg~g~lsE~~~~~~~~e~~gi~~i--gps~~ai~~~~------------------DK~~~r~~l~~~GIp~~  134 (467)
T PRK12833         76 -CGADAIHPGYGFLSENAAFAEAVEAAGLIFV--GPDAQTIRTMG------------------DKARARRTARRAGVPTV  134 (467)
T ss_pred             -hCCCEEEECCCccccCHHHHHHHHHcCCCcc--CCCHHHHHHhc------------------CHHHHHHHHHHcCCCCC
Confidence             333233322221  12233456778899866  43344444432                  2346899999999998 


Q ss_pred             --E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCCh
Q psy7785         462 --I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNV  495 (525)
Q Consensus       462 --~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~  495 (525)
                        .  ...+.+++.+   .++++  |||||+|-....-
T Consensus       135 p~~~~~v~~~~e~~~---~~~~i--gyPvvvKp~~ggg  167 (467)
T PRK12833        135 PGSDGVVASLDAALE---VAARI--GYPLMIKAAAGGG  167 (467)
T ss_pred             CCcCcCcCCHHHHHH---HHHHh--CCCEEEEECCCCC
Confidence              2  6678888877   45664  9999999766543

>PLN02257 phosphoribosylamine--glycine ligase

Probab=95.63  E-value=0.052  Score=58.75  Aligned_cols=68  Identities=25%  Similarity=0.226  Sum_probs=48.5

Q ss_pred             HHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHh
Q psy7785         401 EGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNAC  477 (525)
Q Consensus       401 ~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa  477 (525)
                      ...+.|++.|+|+|  ....++++..                  .+-..+|++|+.+|||+   ..+.+.+++.+   .+
T Consensus        77 ~~~d~l~~~Gi~~~--Gps~~aa~l~------------------~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~---~~  133 (434)
T PLN02257         77 GLADDLVKAGIPTF--GPSAEAAALE------------------GSKNFMKDLCDKYKIPTAKYETFTDPAAAKK---YI  133 (434)
T ss_pred             HHHHHHHHCCCCEE--CChHHHHHHH------------------cCHHHHHHHHHHcCCCCCCeEEeCCHHHHHH---HH
Confidence            34567888999987  4333333221                  12346899999999999   77889998876   45


Q ss_pred             hhcCCCCcEEEEEecC
Q psy7785         478 KSFKLSIPLVVRLEGT  493 (525)
Q Consensus       478 ~~~~~G~PVVlKi~~~  493 (525)
                      +++  |||+|+|-.+.
T Consensus       134 ~~~--g~PvVVKp~~~  147 (434)
T PLN02257        134 KEQ--GAPIVVKADGL  147 (434)
T ss_pred             HHc--CCCEEEEcCCC
Confidence            564  99999998763

>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon

Probab=95.56  E-value=0.065  Score=55.75  Aligned_cols=93  Identities=14%  Similarity=0.234  Sum_probs=65.0

Q ss_pred             HhhhhhCCCCCCCccccCCHHHHHHHHHhcCC--CcEEEEEeeccccCCCCCccCCCcceEEEeC-CcccHHHHHH----
Q psy7785          14 YLVKPVSTVHSTDKVCLEDARTATNILKDLNF--KEYVIKAQILAGGRGLGHFDNGFKSGVHFTN-NVQDIPPILE----   86 (525)
Q Consensus        14 ~~~k~~~GIpvp~~~~~~~~eea~~~a~~lg~--~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~-~~eea~~a~~----   86 (525)
                      |+..++.|||+|++.+++|.+|.+.+.+++++  .|+.+|+..-.+|+           |.++-. +.++.....+    
T Consensus       112 y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~-----------GFr~l~~~~~~l~~l~~~~~~  180 (329)
T PF15632_consen  112 YEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVGIGGR-----------GFRVLDESRDELDALFEPDSR  180 (329)
T ss_pred             HHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccCCCcc-----------eEEEEccCcchHHHhcCCCcc
Confidence            44444789999999999999999999999876  25999996544443           444443 3333332222    


Q ss_pred             --------HHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          87 --------KMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        87 --------~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                              +.+..          ......++|+|+++ |.|++|=+..+.
T Consensus       181 ~i~~~~~~~~l~~----------~~~~~~llvMeyL~-G~EySVD~l~~~  219 (329)
T PF15632_consen  181 RISLDELLAALQR----------SEEFPPLLVMEYLP-GPEYSVDCLADE  219 (329)
T ss_pred             eeCHHHHHHHHhc----------cCCCCCcEEecCCC-CCeEEEEEEecC
Confidence                    22211          12357799999998 899999999886

>KOG1255|consensus

Probab=95.55  E-value=0.12  Score=50.79  Aligned_cols=126  Identities=15%  Similarity=0.202  Sum_probs=84.1

Q ss_pred             ccCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEe-cccccChHHHHHH
Q psy7785         299 GMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNV-FGGIVNCATIAKG  376 (525)
Q Consensus       299 ~~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~-~~~~~~~~~ia~~  376 (525)
                      ...+.|+|++-||-+---+.-.--..|+-..--+-++|++.+- .|-+||+..++||+..+|++.- .+|.. .++.|+-
T Consensus       174 hk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~A-Ee~AA~f  252 (329)
T KOG1255|consen  174 HKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSA-EEEAAEF  252 (329)
T ss_pred             ccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChh-hHHHHHH
Confidence            3457999999999776666555556677666778889988764 4999999999999999988742 23322 2333444


Q ss_pred             HHHHHHhcCCCCcEEEEeCCc--------------------chHHHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785         377 LVNACKSFKLSIPLVVRLEGT--------------------NVQEGKRILDESKLPLIFASDLDEAASLVNA  428 (525)
Q Consensus       377 i~~a~~~~~~~kPivv~~~g~--------------------~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~  428 (525)
                      +-+.... ...|||+....|.                    ...+-...|+++||-+.  ++|..-=.++..
T Consensus       253 lk~~nSg-~~~kPVvsFIAG~tAppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~vt--~sPa~lG~~~~~  321 (329)
T KOG1255|consen  253 LKEYNSG-STAKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAKDKIAALRDAGVVVT--ESPAKLGSAMLE  321 (329)
T ss_pred             HHHhccC-CCCCceeEEeecccCCCcccccccceeeeCCCccHHHHHHHHHhcCeEEE--cCHHHHHHHHHH
Confidence            3333221 1469997543221                    23344667888999888  888776665543

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=95.49  E-value=0.12  Score=55.43  Aligned_cols=67  Identities=25%  Similarity=0.321  Sum_probs=48.2

Q ss_pred             HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785         402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK  478 (525)
Q Consensus       402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~  478 (525)
                      ..+.+++.|+|++  ....++++..                  .+-...+++|+++|||+   ..+.+.+++.+   .++
T Consensus        80 ~~~~l~~~gi~~~--g~~~~~~~~~------------------~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~---~~~  136 (423)
T TIGR00877        80 LVDALEEAGIPVF--GPTKEAAQLE------------------GSKAFAKDFMKRYGIPTAEYEVFTDPEEALS---YIQ  136 (423)
T ss_pred             HHHHHHHCCCeEE--CCCHHHHHHH------------------CCHHHHHHHHHHCCCCCCCeEEECCHHHHHH---HHH
Confidence            3567888999987  4333333332                  12346889999999999   77889998877   455


Q ss_pred             hcCCCCc-EEEEEecC
Q psy7785         479 SFKLSIP-LVVRLEGT  493 (525)
Q Consensus       479 ~~~~G~P-VVlKi~~~  493 (525)
                      ++  ||| +|+|-...
T Consensus       137 ~~--g~P~~VvKp~~~  150 (423)
T TIGR00877       137 EK--GAPAIVVKADGL  150 (423)
T ss_pred             hc--CCCeEEEEECCC
Confidence            64  999 99998643

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=95.22  E-value=0.081  Score=56.84  Aligned_cols=66  Identities=21%  Similarity=0.275  Sum_probs=47.0

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...+++.|+|++  ....++++..                  .+-...+++|+++|||+   ..+.+.+++.+   .+++
T Consensus        79 ~~~l~~~gi~~~--g~~~~~~~~~------------------~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~~  135 (420)
T PRK00885         79 VDAFRAAGLPIF--GPTKAAAQLE------------------GSKAFAKDFMARYGIPTAAYETFTDAEEALA---YLDE  135 (420)
T ss_pred             HHHHHHCCCcEE--CcCHHHHHHH------------------cCHHHHHHHHHHcCCCCCCeEEeCCHHHHHH---HHHH
Confidence            457788999987  4333333222                  12346889999999999   77889998877   3456


Q ss_pred             cCCCCcEEEEEecC
Q psy7785         480 FKLSIPLVVRLEGT  493 (525)
Q Consensus       480 ~~~G~PVVlKi~~~  493 (525)
                      +  |||||+|=.+.
T Consensus       136 ~--~~P~VvKP~~~  147 (420)
T PRK00885        136 K--GAPIVVKADGL  147 (420)
T ss_pred             c--CCCEEEEeCCC
Confidence            3  99999998653

>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=95.17  E-value=0.14  Score=55.54  Aligned_cols=153  Identities=13%  Similarity=0.119  Sum_probs=81.4

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK  382 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~  382 (525)
                      +|.|+ ++|=.++..+-++.+.|.... .++...+..      +...-+.    |-.++..+....+...-.+.|.+.++
T Consensus         4 ~iLi~-g~g~~a~~i~~aa~~~G~~vv-~~~~~~d~~------a~~~~~a----d~~~~~~~~~~~~~y~d~~~l~~~a~   71 (451)
T PRK08591          4 KILIA-NRGEIALRIIRACKELGIKTV-AVHSTADRD------ALHVQLA----DEAVCIGPAPSKKSYLNIPAIISAAE   71 (451)
T ss_pred             eEEEE-CCCHHHHHHHHHHHHcCCeEE-EEcChhhcc------CCCHhHC----CEEEEeCCCCcccccCCHHHHHHHHH
Confidence            56666 788889999999999998521 011111110      0000111    22221111100001111245566555


Q ss_pred             hcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCC
Q psy7785         383 SFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLP  460 (525)
Q Consensus       383 ~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIp  460 (525)
                      +.  +.-.++...|.  ......+.+++.|+|++  ....+++..+.                  +-...+++|+++|||
T Consensus        72 ~~--~id~I~p~~~~~~e~~~~~~~~e~~gi~~~--g~~~~~~~~~~------------------DK~~~r~~l~~~gIp  129 (451)
T PRK08591         72 IT--GADAIHPGYGFLSENADFAEICEDSGFTFI--GPSAETIRLMG------------------DKVTAKATMKKAGVP  129 (451)
T ss_pred             Hh--CCCEEEECCCccccCHHHHHHHHHCCCceE--CcCHHHHHHhc------------------CHHHHHHHHHHcCCC
Confidence            52  22233322221  12234567888999977  43334443332                  223578999999999


Q ss_pred             e-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         461 L-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       461 v-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      +     ..+.+.+++.+   .++++  |||||+|-....
T Consensus       130 ~pp~~~~~v~~~~~~~~---~~~~~--g~PvvvKP~~g~  163 (451)
T PRK08591        130 VVPGSDGPVDDEEEALA---IAKEI--GYPVIIKATAGG  163 (451)
T ss_pred             CCCCcccccCCHHHHHH---HHHHc--CCCEEEEECCCC
Confidence            8     25678888877   45564  999999975543

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=95.13  E-value=0.11  Score=56.40  Aligned_cols=75  Identities=16%  Similarity=0.067  Sum_probs=49.7

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe----EEEcChhHHHHHHHHhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL----IFASDLDEAASLVNACK  478 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv----~lA~s~deAv~~~~aa~  478 (525)
                      ...|.+.|+|+|  -...++++.-                  .+-..++++|..+|||.    ..+.+.+|+...   +.
T Consensus        82 ~~~l~~~Gi~v~--gps~~~a~~e------------------~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~---~~  138 (435)
T PRK06395         82 VNNLLKRGIKVA--SPTMEAAMIE------------------TSKMFMRYLMERHNIPGNINFNACFSEKDAARD---YI  138 (435)
T ss_pred             HHHHHHCCCcEE--CCCHHHHHHh------------------hCHHHHHHHHHHCCcCCCcccceeCChHHHHHH---HH
Confidence            457778899998  4434432221                  12346899999999997    256577777773   44


Q ss_pred             hcCCCCcEEEEEecCChHHHHHhh
Q psy7785         479 SFKLSIPLVVRLEGTNVQEGKRIL  502 (525)
Q Consensus       479 ~~~~G~PVVlKi~~~~~~~~~~~~  502 (525)
                      ++  |||||+|-.+..-.+|-.+.
T Consensus       139 ~~--~~PvVVKP~~~sggkGV~v~  160 (435)
T PRK06395        139 TS--MKDVAVKPIGLTGGKGVKVT  160 (435)
T ss_pred             hh--CCCEEEEeCCCCCCCCeEEe
Confidence            53  99999998775555444444

>TIGR02712 urea_carbox urea carboxylase

Probab=95.08  E-value=0.19  Score=60.93  Aligned_cols=150  Identities=13%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             EEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-ccChHHHHHHHHHHHHhc
Q psy7785         306 CLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-IVNCATIAKGLVNACKSF  384 (525)
Q Consensus       306 IitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~~~~~~ia~~i~~a~~~~  384 (525)
                      .|.|+|-.++..+-++.+.|... --++.-.+..      +...-..|    -.++ +..+ ......-.+.|.+++++.
T Consensus         5 LI~g~Geia~~iiraak~lGi~~-v~v~sd~d~~------a~~v~~AD----~~v~-l~~~~~~~sy~d~e~Il~~a~~~   72 (1201)
T TIGR02712         5 LIANRGEIAVRIIRTLRRMGIRS-VAVYSDADAA------SQHVLDAD----EAVC-LGGAPAAESYLDIDKILAAAKKT   72 (1201)
T ss_pred             EEECCCHHHHHHHHHHHHcCCeE-EEEECCCCCC------ccchhhCC----EEEE-cCCCCcccCCCCHHHHHHHHHHH
Confidence            46788889999999999999851 1111111111      11111122    2221 1111 111111134566666652


Q ss_pred             CCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785         385 KLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-  461 (525)
Q Consensus       385 ~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-  461 (525)
                        +.-.++...|.  +.......+++.|++++  ....++++.+.                  +-..+|++|+++|||+ 
T Consensus        73 --~idaIiPG~gflsE~~~~a~~~e~~Gi~~i--Gps~ea~~~~~------------------DK~~ar~ll~~~GVPt~  130 (1201)
T TIGR02712        73 --GAQAIHPGYGFLSENAAFAEACEAAGIVFV--GPTPEQIRKFG------------------LKHTARELAEAAGVPLL  130 (1201)
T ss_pred             --CCCEEEeCCcccccCHHHHHHHHHcCCcEE--CCCHHHHHHhc------------------CHHHHHHHHHHCCCCCC
Confidence              22222221121  12234567888999876  33334443331                  2346899999999997 


Q ss_pred             ---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         462 ---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       462 ---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                         .++.|.+||.+   .++++  |||||+|-....
T Consensus       131 p~~~lv~s~dea~~---~a~~i--gyPvVVKP~~gg  161 (1201)
T TIGR02712       131 PGTGLLSSLDEALE---AAKEI--GYPVMLKSTAGG  161 (1201)
T ss_pred             CceeecCCHHHHHH---HHHhc--CCeEEEEECCCC
Confidence               46789999887   45664  999999976654

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]

Probab=94.93  E-value=0.095  Score=53.50  Aligned_cols=94  Identities=12%  Similarity=0.206  Sum_probs=71.9

Q ss_pred             hhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785          16 VKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        16 ~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~   95 (525)
                      ..++.||+.|+  ..++|||.       +. ||+||.....+||           |-.++.|++|..+.+++++.+... 
T Consensus       131 lLekAgi~~P~--~~~~PeeI-------dr-~VIVK~pgAkggR-----------GyFiA~s~eef~ek~e~l~~~gvi-  188 (361)
T COG1759         131 LLEKAGLRIPK--KYKSPEEI-------DR-PVIVKLPGAKGGR-----------GYFIASSPEEFYEKAERLLKRGVI-  188 (361)
T ss_pred             HHHHcCCCCCc--ccCChHHc-------CC-ceEEecCCccCCc-----------eEEEEcCHHHHHHHHHHHHHcCCc-
Confidence            33389999997  67888864       63 9999998776644           677889999999999999876442 


Q ss_pred             ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                           ..+..+...|||++- |.=+|+.....|.. +-+=++|
T Consensus       189 -----~~edlkna~IeEYv~-G~~f~~~yFyS~i~-~~lEl~g  224 (361)
T COG1759         189 -----TEEDLKNARIEEYVV-GAPFYFHYFYSPIK-DRLELLG  224 (361)
T ss_pred             -----chhhhhhceeeEEee-ccceeeeeeecccc-CceeEee
Confidence                 223468899999985 67788888888887 4455555

>PLN02941 inositol-tetrakisphosphate 1-kinase

Probab=94.58  E-value=0.085  Score=54.92  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=49.7

Q ss_pred             CCCCCccccCCHHHHH---HHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          22 VHSTDKVCLEDARTAT---NILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        22 Ipvp~~~~~~~~eea~---~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ||+|++.++.+.+.+.   ....++|| |+|+|+..-+|. .+       .-++.+..+.+++..         +     
T Consensus       127 i~~P~t~v~~~~~~al~~~~~~~~l~~-P~V~KPl~g~Gs-s~-------gh~m~lv~~~~~L~~---------l-----  183 (328)
T PLN02941        127 VGVPKQLVVYDDESSIPDAVALAGLKF-PLVAKPLVADGS-AK-------SHKMSLAYDQEGLSK---------L-----  183 (328)
T ss_pred             CCCCCEEEEcCHHHHHHHHHHHhcCCC-CEEEeecccCCC-cc-------ccceEEecCHHHHHh---------c-----
Confidence            9999999999987655   44578897 999999655321 11       336777777655443         1     


Q ss_pred             CCCCcccCeEEEEeeeCCc-eeEEEEEE
Q psy7785          99 PKTGINVNKVMVAKSVNIT-RETYFCIV  125 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~-~E~~vgv~  125 (525)
                        .    ..+++|||++++ +-+-+-+.
T Consensus       184 --~----~p~~lQEfVnh~g~d~RVfVv  205 (328)
T PLN02941        184 --E----PPLVLQEFVNHGGVLFKVYVV  205 (328)
T ss_pred             --C----CcEEEEEecCCCCEEEEEEEE
Confidence              0    128999999764 33333333

>KOG0368|consensus

Probab=94.08  E-value=0.49  Score=56.80  Aligned_cols=84  Identities=19%  Similarity=0.423  Sum_probs=65.5

Q ss_pred             ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccCCCCCcccCeE
Q psy7785          29 CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKV  108 (525)
Q Consensus        29 ~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~v  108 (525)
                      ++++++|..++++.+|| |+-+|+-  .||=||         |++-+.+.++..+.+++.... +       +   ...+
T Consensus       224 cv~~~eegLeaae~IGf-PvMIKAS--EGGGGK---------GIRkv~n~ddF~~lf~qv~~E-v-------P---GSPI  280 (2196)
T KOG0368|consen  224 CVRNVEEGLEAAEKIGF-PVMIKAS--EGGGGK---------GIRKVENEDDFKALFKQVQNE-V-------P---GSPI  280 (2196)
T ss_pred             hcCCHHHHHHHHHhcCC-ceEEEec--cCCCCc---------ceeeccchHHHHHHHHHHHhh-C-------C---CCce
Confidence            56899999999999998 9999994  334377         888888999999999988653 1       2   3457


Q ss_pred             EEEeeeCCceeEEEEEEEcCCCCccEEEe
Q psy7785         109 MVAKSVNITRETYFCIVQDRLHNGPVVII  137 (525)
Q Consensus       109 lVee~~~~~~E~~vgv~~D~~f~gpvi~~  137 (525)
                      +|.+-+.+.+-+-+-+.-|.-  |-+|.+
T Consensus       281 FlMK~a~~ARHlEVQlLaDqY--Gn~IsL  307 (2196)
T KOG0368|consen  281 FLMKLADQARHLEVQLLADQY--GNVISL  307 (2196)
T ss_pred             eeeecccCcceeeeehhhhhc--CCEeEe
Confidence            888888888888888888863  555543

>PRK12458 glutathione synthetase; Provisional

Probab=93.92  E-value=0.27  Score=51.43  Aligned_cols=78  Identities=14%  Similarity=0.161  Sum_probs=51.3

Q ss_pred             CCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCccc--HHHHHHHHhccccccccCC
Q psy7785          22 VHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQD--IPPILEKMIGHKLITKQTP   99 (525)
Q Consensus        22 Ipvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~ee--a~~a~~~l~~~~~~~~~~~   99 (525)
                      +++|++.+..+.+++.++.++.|++|+|+|+..-.+|+           ||.+..+.++  +...++.+..         
T Consensus       139 ~~vP~T~v~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~-----------gV~~v~~~~~~~~~~ile~~~~---------  198 (338)
T PRK12458        139 EVRPTTHISRNKEYIREFLEESPGDKMILKPLQGSGGQ-----------GVFLIEKSAQSNLNQILEFYSG---------  198 (338)
T ss_pred             CCCCCEEEeCCHHHHHHHHHHcCCCeEEEEECCCCCcc-----------CeEEEecCChhhHHHHHHHHhh---------
Confidence            68899999999999999999997645999996544432           5666544332  3333333211         


Q ss_pred             CCCcccCeEEEEeeeCC--ceeEEEEE
Q psy7785         100 KTGINVNKVMVAKSVNI--TRETYFCI  124 (525)
Q Consensus       100 ~~g~~~~~vlVee~~~~--~~E~~vgv  124 (525)
                           -..++||+|++.  ..++.+-+
T Consensus       199 -----~~~~ivQeyI~~~~~gDiRv~v  220 (338)
T PRK12458        199 -----DGYVIAQEYLPGAEEGDVRILL  220 (338)
T ss_pred             -----CCCEEEEEcccCCCCCCEEEEE
Confidence                 125899999973  34555554

>PRK05586 biotin carboxylase; Validated

Probab=93.90  E-value=0.45  Score=51.61  Aligned_cols=151  Identities=14%  Similarity=0.140  Sum_probs=79.2

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHH--HHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATI--AKGLVNA  380 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~i--a~~i~~a  380 (525)
                      +|+| -|+|=.|++.+-++.+.|+.+   +-+..+  .+.  .+...-+.    |-.++..+.  .+...+  .+.|+++
T Consensus         4 kvli-~g~G~~~~~~~~aa~~lG~~~---v~v~~~--~d~--~a~~~~~a----D~~~~~~~~--~~~~~y~~~~~i~~~   69 (447)
T PRK05586          4 KILI-ANRGEIAVRIIRACREMGIET---VAVYSE--ADK--DALHVQLA----DEAVCIGPA--SSKDSYLNIQNIISA   69 (447)
T ss_pred             eEEE-ECCcHHHHHHHHHHHHcCCcE---EEEcCh--Hhc--cCcchhhC----CEEEEeCCC--ChhhcccCHHHHHHH
Confidence            4555 467779999999999999862   111100  010  00111112    222221111  111111  2456666


Q ss_pred             HHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCC
Q psy7785         381 CKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESK  458 (525)
Q Consensus       381 ~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayG  458 (525)
                      +...  +.-.+....|.  +.....+.++..|+|++  ....+++..+.                  +-...+++|+++|
T Consensus        70 ~~~~--~~d~i~p~~~~~~E~~~~a~~~~~~gi~~~--g~s~~~~~~~~------------------DK~~~k~~l~~~G  127 (447)
T PRK05586         70 TVLT--GAQAIHPGFGFLSENSKFAKMCKECNIVFI--GPDSETIELMG------------------NKSNAREIMIKAG  127 (447)
T ss_pred             HHHc--CCCEEEcCccccccCHHHHHHHHHCCCcEE--CcCHHHHHhhC------------------CHHHHHHHHHHCC
Confidence            6652  22223221221  11233446677899866  33333333321                  2346889999999


Q ss_pred             CCe--E---EEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         459 LPL--I---FASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       459 Ipv--~---lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      ||+  .   .+.+.+++.+   +++++  |||||+|-....
T Consensus       128 Ipvp~~~~~~~~~~~e~~~---~~~~i--gyPvvvKP~~gg  163 (447)
T PRK05586        128 VPVVPGSEGEIENEEEALE---IAKEI--GYPVMVKASAGG  163 (447)
T ss_pred             CCCCCCcccccCCHHHHHH---HHHHc--CCCEEEEECCCC
Confidence            999  2   4678888876   45564  999999965544

>PRK08462 biotin carboxylase; Validated

Probab=93.85  E-value=0.23  Score=53.72  Aligned_cols=150  Identities=16%  Similarity=0.224  Sum_probs=82.2

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHH--HHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATI--AKGLVNA  380 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~i--a~~i~~a  380 (525)
                      +|.| -|+|=.++-.+.+|.+.|..+- =++...+.+      +.-.-..|.   .+.+  ..+. ....+  .+.|+++
T Consensus         6 ~ili-~~~g~~~~~~~~~~~~~G~~~v-~~~~~~d~~------~~~~~~ad~---~~~~--~~~~-~~~~y~~~~~l~~~   71 (445)
T PRK08462          6 RILI-ANRGEIALRAIRTIQEMGKEAI-AIYSTADKD------ALYLKYADA---KICI--GGAK-SSESYLNIPAIISA   71 (445)
T ss_pred             EEEE-ECCcHHHHHHHHHHHHcCCCEE-EEechhhcC------CchhhhCCE---EEEe--CCCc-hhcccCCHHHHHHH
Confidence            4544 5666679999999999998630 000001110      010111221   1111  1111 11122  4577777


Q ss_pred             HHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCC
Q psy7785         381 CKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESK  458 (525)
Q Consensus       381 ~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayG  458 (525)
                      +++.  +.-.++...|.  ......+.++..|+|++  ....+++..+.                  +-...+++|++.|
T Consensus        72 ~~~~--~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~--g~~~~~~~~~~------------------dK~~~r~~l~~~g  129 (445)
T PRK08462         72 AEIF--EADAIFPGYGFLSENQNFVEICSHHNIKFI--GPSVEVMALMS------------------DKSKAKEVMKRAG  129 (445)
T ss_pred             HHHc--CCCEEEECCCccccCHHHHHHHHHCCCeEE--CcCHHHHHHhC------------------CHHHHHHHHHHCC
Confidence            7763  33334333332  12233457788999987  44444444331                  2346889999999


Q ss_pred             CCe-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785         459 LPL-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGT  493 (525)
Q Consensus       459 Ipv-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~  493 (525)
                      ||+     ..+.+.+++..   +++++  |||||+|=...
T Consensus       130 Ip~pp~~~~~~~~~~~~~~---~~~~~--g~PvvvKP~~g  164 (445)
T PRK08462        130 VPVIPGSDGALKSYEEAKK---IAKEI--GYPVILKAAAG  164 (445)
T ss_pred             CCCCCCcccccCCHHHHHH---HHHHc--CCCEEEEeCCC
Confidence            998     24678888877   45564  99999996553

>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6

Probab=93.41  E-value=0.16  Score=48.82  Aligned_cols=40  Identities=20%  Similarity=0.345  Sum_probs=32.6

Q ss_pred             HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcE-EEEEecC
Q psy7785         449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPL-VVRLEGT  493 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PV-VlKi~~~  493 (525)
                      -+|+++..||||.   ..++|.++|.+.   .++.  ++|+ |+|..|.
T Consensus         5 faK~fm~~~~IPTa~~~~f~~~~~A~~~---l~~~--~~p~~ViKadGl   48 (194)
T PF01071_consen    5 FAKEFMKRYGIPTAKYKVFTDYEEALEY---LEEQ--GYPYVVIKADGL   48 (194)
T ss_dssp             HHHHHHHHTT-SB--EEEESSHHHHHHH---HHHH--SSSEEEEEESSS
T ss_pred             HHHHHHHHcCCCCCCeeEECCHHHHHHH---HHhc--CCCceEEccCCC
Confidence            5899999999999   889999999995   4443  7898 9997664

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=93.32  E-value=0.93  Score=51.61  Aligned_cols=130  Identities=21%  Similarity=0.289  Sum_probs=87.8

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      +.|+||-++.  ...+.+|+.+.+++.|| ||.+|+-.--|||           |-++..+.+++.+++++--+....  
T Consensus       131 ~agvPvipgt~~~~~~~ee~~~fa~~~gy-PvmiKA~~GGGGR-----------GMR~vr~~~~l~~~~~~AksEAka--  196 (1149)
T COG1038         131 KAGVPVIPGTDGPIETIEEALEFAEEYGY-PVMIKAAAGGGGR-----------GMRVVRSEADLAEAFERAKSEAKA--  196 (1149)
T ss_pred             HcCCCccCCCCCCcccHHHHHHHHHhcCC-cEEEEEccCCCcc-----------ceeeecCHHHHHHHHHHHHHHHHH--
Confidence            7899985543  45679999999999998 9999996433433           677888888888888887554321  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEE-EecCCCCcccccccccCCCeEEEEecCCCCCCCHHHHHHH
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVV-IISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDI  175 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi-~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l~~~~a~~~  175 (525)
                         ..|  ...|+||+++...+-+-+-+.-|..  |-+| +|- .   |--+-+ .+ .  +.+-+.|...|+++.-.++
T Consensus       197 ---AFG--~~eVyvEk~ve~pkHIEVQiLgD~~--GnvvHLfE-R---DCSvQR-Rh-Q--KVVE~APa~~L~~~~R~~i  261 (1149)
T COG1038         197 ---AFG--NDEVYVEKLVENPKHIEVQILGDTH--GNVVHLFE-R---DCSVQR-RH-Q--KVVEVAPAPYLSPELRDEI  261 (1149)
T ss_pred             ---hcC--CCcEEhhhhhcCcceeEEEEeecCC--CCEEEEee-c---ccchhh-cc-c--eeEEecCCCCCCHHHHHHH
Confidence               123  3679999999877777788887765  3443 333 1   122222 22 1  2356788888998776666


Q ss_pred             HH
Q psy7785         176 AD  177 (525)
Q Consensus       176 ~~  177 (525)
                      ..
T Consensus       262 c~  263 (1149)
T COG1038         262 CD  263 (1149)
T ss_pred             HH
Confidence            54

>PRK08463 acetyl-CoA carboxylase subunit A; Validated

Probab=92.88  E-value=0.35  Score=53.01  Aligned_cols=156  Identities=11%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             EEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcC
Q psy7785         306 CLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFK  385 (525)
Q Consensus       306 IitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~  385 (525)
                      .|.|+|-.++..+-+|.+.|...- -++...+..      +...-..|    -.++ +.........-.+.|++++++. 
T Consensus         6 Li~~~ge~a~~~i~aa~~lG~~~v-~v~~~~d~~------~~~~~~AD----~~~~-i~~~~~~~y~d~~~i~~~a~~~-   72 (478)
T PRK08463          6 LIANRGEIAVRVIRACRDLHIKSV-AIYTEPDRE------CLHVKIAD----EAYR-IGTDPIKGYLDVKRIVEIAKAC-   72 (478)
T ss_pred             EEECCCHHHHHHHHHHHHcCCeEE-EEECCCccC------CcchhhcC----EEEE-cCCCchhcccCHHHHHHHHHHh-
Confidence            456777889999999999998520 011101110      11111112    1111 1111000001123555666652 


Q ss_pred             CCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe--
Q psy7785         386 LSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL--  461 (525)
Q Consensus       386 ~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv--  461 (525)
                       +.-.++...|.  ......+.+.+.|+++.  ....+++..+.                  +-...++++.++|||+  
T Consensus        73 -~iDaI~pg~g~lsE~~~~a~~~e~~Gi~~i--Gps~~~i~~~~------------------DK~~~k~~l~~~gIpvpp  131 (478)
T PRK08463         73 -GADAIHPGYGFLSENYEFAKAVEDAGIIFI--GPKSEVIRKMG------------------NKNIARYLMKKNGIPIVP  131 (478)
T ss_pred             -CCCEEEECCCccccCHHHHHHHHHCCCcee--cCCHHHHHhhC------------------cHHHHHHHHHHcCCCCCC
Confidence             22223222221  22334567788999876  33333343331                  2346899999999998  


Q ss_pred             -EE---EcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785         462 -IF---ASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR  500 (525)
Q Consensus       462 -~l---A~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~  500 (525)
                       ..   ..+.+++.+   .++++  |||||+|-....-..|.+
T Consensus       132 ~~~~~~~~~~~~~~~---~~~~i--gyPvvvKP~~ggGg~Gv~  169 (478)
T PRK08463        132 GTEKLNSESMEEIKI---FARKI--GYPVILKASGGGGGRGIR  169 (478)
T ss_pred             CccccCCCCHHHHHH---HHHHh--CCCEEEEeCCCCCCCceE
Confidence             22   246777776   45564  999999998765444433

>KOG0369|consensus

Probab=92.84  E-value=0.32  Score=54.07  Aligned_cols=97  Identities=21%  Similarity=0.304  Sum_probs=71.7

Q ss_pred             hCCCCCCCccc--cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVC--LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~--~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      +.|+|+.++.=  +++.+||.+++++-|+ ||++|+-.--|||           |.++..+.|++++++++-.+..+.. 
T Consensus       157 ~agVpvVPGTpgPitt~~EA~eF~k~yG~-PvI~KAAyGGGGR-----------GmRvVr~~e~vee~f~Ra~SEA~aa-  223 (1176)
T KOG0369|consen  157 EAGVPVVPGTPGPITTVEEALEFVKEYGL-PVIIKAAYGGGGR-----------GMRVVRSGEDVEEAFQRAYSEALAA-  223 (1176)
T ss_pred             HcCCCccCCCCCCcccHHHHHHHHHhcCC-cEEEeecccCCCc-----------ceEEeechhhHHHHHHHHHHHHHHh-
Confidence            68999866643  5889999999999997 9999997554444           6788889999999998877654421 


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEE
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVI  136 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~  136 (525)
                          .|  .-.++||+|++..+-+-+-+.-|..  |-++=
T Consensus       224 ----FG--nG~~FvEkF~ekPrHIEvQllgD~~--GNvvH  255 (1176)
T KOG0369|consen  224 ----FG--NGTLFVEKFLEKPRHIEVQLLGDKH--GNVVH  255 (1176)
T ss_pred             ----cC--CceeeHHhhhcCcceeEEEEecccC--CCEEE
Confidence                12  2457899999766777777776754  44443

>KOG0237|consensus

Probab=92.80  E-value=1.6  Score=48.17  Aligned_cols=118  Identities=22%  Similarity=0.366  Sum_probs=71.5

Q ss_pred             HHHHHhcCCCccEEEEEec-cccc--Ch---------HHHHHHHHHHHHhcCCCCcEEEEeCCcchH--HH-HHHHhhCC
Q psy7785         346 AFRIISSDSNVKCILVNVF-GGIV--NC---------ATIAKGLVNACKSFKLSIPLVVRLEGTNVQ--EG-KRILDESK  410 (525)
Q Consensus       346 al~~ll~dp~vd~vlv~~~-~~~~--~~---------~~ia~~i~~a~~~~~~~kPivv~~~g~~~~--~~-~~~L~~~G  410 (525)
                      ....|.++|.|+.|++.-. +|..  ++         ..-.++++..+.++  +.-+|  ..|++.+  .+ ...|++.|
T Consensus        17 l~wkL~qSp~v~~v~vaPGn~G~a~~~~~~~~~~dI~~~d~~ala~f~~e~--~I~lV--vvGPE~PL~~Gl~~~l~~~g   92 (788)
T KOG0237|consen   17 LAWKLKQSPKVKKVYVAPGNGGTASGDASKVPNLDISVADFEALASFCKEH--NINLV--VVGPELPLVAGLADVLRSAG   92 (788)
T ss_pred             HHHHhhcCCccceEEEccCCCCcccCccccCcccccChhhHHHHHHHHHHc--ceeEE--EECCchhhhhhhhhhhhccC
Confidence            3455778999999888421 1211  11         12346777777772  33333  3454211  11 45889999


Q ss_pred             CCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCC-CcE
Q psy7785         411 LPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLS-IPL  486 (525)
Q Consensus       411 vpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G-~PV  486 (525)
                      ||+|  .-...|+ .|-                 .+-.-+|++...||||.   ...++.++|...-+.+     + .++
T Consensus        93 i~~F--GPs~~aA-qlE-----------------~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~-----~~~~~  147 (788)
T KOG0237|consen   93 IPCF--GPSKQAA-QLE-----------------ASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSA-----TDKAL  147 (788)
T ss_pred             ccee--CchHHHH-Hhh-----------------hhHHHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhC-----CCcce
Confidence            9999  2222221 111                 12235899999999999   7788899998854432     4 579


Q ss_pred             EEEEec
Q psy7785         487 VVRLEG  492 (525)
Q Consensus       487 VlKi~~  492 (525)
                      |+|..|
T Consensus       148 ViKAdG  153 (788)
T KOG0237|consen  148 VIKADG  153 (788)
T ss_pred             EEeecc
Confidence            999877

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=92.30  E-value=4.1  Score=42.87  Aligned_cols=137  Identities=16%  Similarity=0.181  Sum_probs=79.7

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK  382 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~  382 (525)
                      .||||. ||=+|-|++-+....|.+. -++|-..+...-++.+            -+++.   ...+.    +++.+...
T Consensus         3 tvgIlG-GGQLgrMm~~aa~~lG~~v-~vLdp~~~~PA~~va~------------~~i~~---~~dD~----~al~ela~   61 (375)
T COG0026           3 TVGILG-GGQLGRMMALAAARLGIKV-IVLDPDADAPAAQVAD------------RVIVA---AYDDP----EALRELAA   61 (375)
T ss_pred             eEEEEc-CcHHHHHHHHHHHhcCCEE-EEecCCCCCchhhccc------------ceeec---CCCCH----HHHHHHHh
Confidence            577775 4559999999999999862 3444444443322211            11211   11222    23333333


Q ss_pred             hcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785         383 SFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-  461 (525)
Q Consensus       383 ~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-  461 (525)
                      .  +  .++..-.-+-+.++...+.+. ++++  ++++- ++....                  -..=|++|+..|||+ 
T Consensus        62 ~--~--DViT~EfE~V~~~aL~~l~~~-~~v~--p~~~~-l~~~qd------------------R~~eK~~l~~~Gi~va  115 (375)
T COG0026          62 K--C--DVITYEFENVPAEALEKLAAS-VKVF--PSPDA-LRIAQD------------------RLVEKQFLDKAGLPVA  115 (375)
T ss_pred             h--C--CEEEEeeccCCHHHHHHHHhh-cCcC--CCHHH-HHHHhh------------------HHHHHHHHHHcCCCCC
Confidence            2  2  234322222245566667766 7888  66542 222211                  113588999999999 


Q ss_pred             --EEEcChhHHHHHHHHhhhcCCCCcEEEEEe
Q psy7785         462 --IFASDLDEAASLVNACKSFKLSIPLVVRLE  491 (525)
Q Consensus       462 --~lA~s~deAv~~~~aa~~~~~G~PVVlKi~  491 (525)
                        ..+++.+|..+   +++++  |+|.|+|..
T Consensus       116 ~~~~v~~~~el~~---~~~~~--g~p~VlKtr  142 (375)
T COG0026         116 PFQVVDSAEELDA---AAADL--GFPAVLKTR  142 (375)
T ss_pred             CeEEeCCHHHHHH---HHHHc--CCceEEEec
Confidence              88899998888   56775  999999973

>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=92.25  E-value=0.059  Score=52.59  Aligned_cols=50  Identities=16%  Similarity=0.325  Sum_probs=37.5

Q ss_pred             HHHHHHHHCCCCe---EEE--cChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785         449 EGKRILDESKLPL---IFA--SDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD  503 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA--~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~  503 (525)
                      .++++++..|+|+   ...  .|.+||.+   .|+++  ||||.+|-....--.|.+++.
T Consensus         4 ~~~~~~~~~gvp~~pg~~~~~~~~eea~~---~a~~i--GyPVliKas~ggGG~gm~iv~   58 (211)
T PF02786_consen    4 RFRKLAKKLGVPVPPGSTVPISSVEEALE---FAEEI--GYPVLIKASAGGGGRGMRIVH   58 (211)
T ss_dssp             HHHHHHHHTT-BBSSBESSSBSSHHHHHH---HHHHH---SSEEEEETTSSTTTSEEEES
T ss_pred             HHHHHHHHCCCCcCCCCCCCCCCHHHHHH---HHHhc--CCceEEeeccccccccccccc
Confidence            5789999999999   444  89999998   57775  999999998766555555544

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....

>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3

Probab=91.91  E-value=1.7  Score=44.90  Aligned_cols=111  Identities=20%  Similarity=0.247  Sum_probs=68.8

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCe---ee-----ecCCCCHHHHHHHHHHHhcCC---CccEEEEEecccc--
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANF---LD-----VGGGVNEESIIQAFRIISSDS---NVKCILVNVFGGI--  367 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNP---lD-----l~g~a~~~~~~~al~~ll~dp---~vd~vlv~~~~~~--  367 (525)
                      ..+|||||...|+|+  -|.+.-..-  .+|   +.     +=|...+..+.++++.+.+.+   .+|.|++.=.||.  
T Consensus        14 p~~I~vITs~~gAa~--~D~~~~~~~--r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e   89 (319)
T PF02601_consen   14 PKRIAVITSPTGAAI--QDFLRTLKR--RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE   89 (319)
T ss_pred             CCEEEEEeCCchHHH--HHHHHHHHH--hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChH
Confidence            469999999999887  677665433  333   22     235556677999999998776   7998887544442  


Q ss_pred             ----cChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH-HHHhhCCCCccccCCHHHHHHHHH
Q psy7785         368 ----VNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK-RILDESKLPLIFASDLDEAASLVN  427 (525)
Q Consensus       368 ----~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~-~~L~~~Gvpvf~~~s~~~Av~Al~  427 (525)
                          .+.+.+|++|.+      ++.||+...+-. .+... ....+.     +++||..|+..+.
T Consensus        90 DL~~FN~e~varai~~------~~~PvisaIGHe-~D~ti~D~vAd~-----ra~TPtaaAe~~~  142 (319)
T PF02601_consen   90 DLWAFNDEEVARAIAA------SPIPVISAIGHE-TDFTIADFVADL-----RAPTPTAAAELIV  142 (319)
T ss_pred             HhcccChHHHHHHHHh------CCCCEEEecCCC-CCchHHHHHHHh-----hCCCHHHHHHHHh
Confidence                244555665544      679987654433 22222 222222     3467777766554

1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity

>PRK14016 cyanophycin synthetase; Provisional

Probab=91.59  E-value=0.15  Score=58.80  Aligned_cols=43  Identities=23%  Similarity=0.360  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         447 VQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       447 e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      -..++++|+++|||+   ..+.+.+++.+   +++++  |||||+|-...+
T Consensus       215 K~~tk~lL~~~GIPvP~~~~v~s~~~a~~---~a~~i--G~PvVVKP~~G~  260 (727)
T PRK14016        215 KELTKRLLAAAGVPVPEGRVVTSAEDAWE---AAEEI--GYPVVVKPLDGN  260 (727)
T ss_pred             HHHHHHHHHHCCcCCCCeeEeCCHHHHHH---HHHHc--CCCEEEEECCCC
Confidence            346899999999999   77889999887   46674  999999987655

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=91.50  E-value=0.34  Score=53.06  Aligned_cols=105  Identities=12%  Similarity=0.209  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHhcCCCCcEEE---EeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHH
Q psy7785         372 TIAKGLVNACKSFKLSIPLVV---RLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQ  448 (525)
Q Consensus       372 ~ia~~i~~a~~~~~~~kPivv---~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~  448 (525)
                      -..+.|++++++.  +---+-   .+...+ .+..+.+.++|+-..  .=+..++++|.-                  -.
T Consensus        61 L~~dkIi~Aa~~t--GA~AIHPGYGFLSEN-a~FA~a~~~aGlvfI--GP~~~aI~aMGd------------------K~  117 (645)
T COG4770          61 LDIDKIIDAARRT--GAQAIHPGYGFLSEN-ADFAQAVEDAGLVFI--GPSAGAIRAMGD------------------KI  117 (645)
T ss_pred             ccHHHHHHHHHHh--CcccccCCccccccC-HHHHHHHHHCCcEEE--CCCHHHHHHhcc------------------HH
Confidence            3456777776652  211121   112223 444566778899555  545667777632                  23


Q ss_pred             HHHHHHHHCCCCe-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785         449 EGKRILDESKLPL-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE  504 (525)
Q Consensus       449 eak~LL~ayGIpv-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~  504 (525)
                      +||.+...+|+|+     ....|.+++++   .|++  +||||.+|....+--+|-|+..+
T Consensus       118 ~AK~l~~~AgVp~VPG~~g~~qd~~~~~~---~A~e--iGyPVlIKAsaGGGGKGMRvv~~  173 (645)
T COG4770         118 AAKKLAAEAGVPTVPGYHGPIQDAAELVA---IAEE--IGYPVLIKASAGGGGKGMRVVET  173 (645)
T ss_pred             HHHHHHHHcCCCccCCCCCcccCHHHHHH---HHHh--cCCcEEEEeccCCCCCceEeecC
Confidence            7999999999998     56777777777   5778  49999999988877777665543

>PRK06849 hypothetical protein; Provisional

Probab=91.46  E-value=6.1  Score=41.88  Aligned_cols=154  Identities=12%  Similarity=0.037  Sum_probs=81.4

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC  381 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~  381 (525)
                      .+|.|+..+.+.|.-.+-.+.+.|..+    -+. +.....+....+      .+|..+. .+....+.....+.|.+.+
T Consensus         5 ~~VLI~G~~~~~~l~iar~l~~~G~~V----i~~-d~~~~~~~~~s~------~~d~~~~-~p~p~~d~~~~~~~L~~i~   72 (389)
T PRK06849          5 KTVLITGARAPAALELARLFHNAGHTV----ILA-DSLKYPLSRFSR------AVDGFYT-IPSPRWDPDAYIQALLSIV   72 (389)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEE----EEE-eCCchHHHHHHH------hhhheEE-eCCCCCCHHHHHHHHHHHH
Confidence            467777777777888888999888752    111 112222221111      1232222 2222233456667777777


Q ss_pred             HhcCCCCcEEEEeCCcc--hHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785         382 KSFKLSIPLVVRLEGTN--VQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL  459 (525)
Q Consensus       382 ~~~~~~kPivv~~~g~~--~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI  459 (525)
                      ++  .+..+++......  ....+..|+. ++.++ ..+++ .+..+.                  +-..-.++++..||
T Consensus        73 ~~--~~id~vIP~~e~~~~~a~~~~~l~~-~~~v~-~~~~~-~~~~~~------------------DK~~~~~~~~~~Gi  129 (389)
T PRK06849         73 QR--ENIDLLIPTCEEVFYLSHAKEELSA-YCEVL-HFDFE-LLLLLH------------------NKWEFAEQARSLGL  129 (389)
T ss_pred             HH--cCCCEEEECChHHHhHHhhhhhhcC-CcEEE-cCCHH-HHHHhh------------------CHHHHHHHHHHcCC
Confidence            76  3445554433221  1111223332 23333 12332 232221                  23357889999999


Q ss_pred             Ce---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         460 PL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       460 pv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      |+   ....+.+++..   .+.+. .|||+|+|=....
T Consensus       130 pvP~t~~v~~~~~l~~---~~~~~-~~~P~vlKP~~~~  163 (389)
T PRK06849        130 SVPKTYLITDPEAIRN---FMFKT-PHTPYVLKPIYSR  163 (389)
T ss_pred             CCCCEEEeCCHHHHHH---HhhcC-CCCcEEEEeCccc
Confidence            99   66778887765   33342 3899999976554

>KOG0238|consensus

Probab=91.16  E-value=0.65  Score=50.28  Aligned_cols=104  Identities=15%  Similarity=0.199  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhcCCCCcEEEEeCC--cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHH
Q psy7785         373 IAKGLVNACKSFKLSIPLVVRLEG--TNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEG  450 (525)
Q Consensus       373 ia~~i~~a~~~~~~~kPivv~~~g--~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~ea  450 (525)
                      ..+.|++++.+  ++..-+---.|  .+..+..+..+++|+-..  .-+..|++.+..                  -..+
T Consensus        58 ~~~~I~~aa~~--tgaqaihPGYGFLSEn~~Fae~c~~~Gi~Fi--GP~~~aIrdMG~------------------K~~s  115 (670)
T KOG0238|consen   58 RMDKIIDAAKR--TGAQAIHPGYGFLSENAEFAELCEDAGITFI--GPPPSAIRDMGD------------------KSTS  115 (670)
T ss_pred             hHHHHHHHHHh--cCCceecCCccccccchHHHHHHHHcCCeEE--CCCHHHHHHhcc------------------hHHH
Confidence            34567777665  33222321122  123455677888999666  555667766632                  2369


Q ss_pred             HHHHHHCCCCe-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785         451 KRILDESKLPL-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD  503 (525)
Q Consensus       451 k~LL~ayGIpv-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~  503 (525)
                      |++..++|+|+     ....|.|++++   .|+++  ||||.+|..-.+--+|-||..
T Consensus       116 k~im~~AgVp~vpG~~g~~qs~e~~~~---~a~eI--gyPvMiKa~~GGGGkGMria~  168 (670)
T KOG0238|consen  116 KQIMKAAGVPLVPGYHGEDQSDEEAKK---VAREI--GYPVMIKATAGGGGKGMRIAW  168 (670)
T ss_pred             HHHHHhcCCccccCcccccccHHHHHH---HHHhc--CCcEEEEeccCCCCcceEeec
Confidence            99999999998     67788899998   46684  999999997665555555444

>PRK12999 pyruvate carboxylase; Reviewed

Probab=91.15  E-value=0.73  Score=55.80  Aligned_cols=154  Identities=12%  Similarity=0.126  Sum_probs=83.6

Q ss_pred             EEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhc
Q psy7785         305 GCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF  384 (525)
Q Consensus       305 aIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~  384 (525)
                      -.|.|.|-.++...-+|.+.|...   +=+..+.+..    +...-..|.   .+.+...........-.+.|++.+++.
T Consensus         8 vLianrGeiavri~raa~elGi~~---Vav~s~~D~~----a~~~~~ADe---~~~i~~~~~~~~~Yldid~Ii~iAk~~   77 (1146)
T PRK12999          8 VLVANRGEIAIRIFRAATELGIRT---VAIYSEEDKL----SLHRFKADE---AYLIGEGKHPVRAYLDIDEIIRVAKQA   77 (1146)
T ss_pred             EEEECCcHHHHHHHHHHHHcCCEE---EEEECCCCcC----CchHHhCCE---EEEcCCCCCcccCccCHHHHHHHHHHh
Confidence            467889999999999999999752   1111111110    001111221   122210000011111134566666652


Q ss_pred             CCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785         385 KLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-  461 (525)
Q Consensus       385 ~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-  461 (525)
                        +.-.+....|.  +.....+.+++.|+++.  ....+++..+.                  +-..+++++.++|||+ 
T Consensus        78 --~iDaI~PgyGflsE~~~~a~~~e~~Gi~fi--Gps~eai~~~~------------------DK~~~r~~l~~~GVPv~  135 (1146)
T PRK12999         78 --GVDAIHPGYGFLSENPEFARACAEAGITFI--GPTAEVLRLLG------------------DKVAARNAAIKAGVPVI  135 (1146)
T ss_pred             --CCCEEEeCCCccccCHHHHHHHHHcCCccc--CCCHHHHHHhC------------------CHHHHHHHHHHCCCCCC
Confidence              22122222221  22334566788899865  33333343331                  2346899999999998 


Q ss_pred             --E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCCh
Q psy7785         462 --I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNV  495 (525)
Q Consensus       462 --~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~  495 (525)
                        .  .+.+.+++.+   +++++  ||||++|-....-
T Consensus       136 P~~~~~v~s~eea~~---~a~~i--GyPvVVKP~~GgG  168 (1146)
T PRK12999        136 PGSEGPIDDIEEALE---FAEEI--GYPIMLKASAGGG  168 (1146)
T ss_pred             CCcccCCCCHHHHHH---HHHHh--CCCEEEEECCCCC
Confidence              2  5788898887   46674  9999999866543

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=91.10  E-value=0.76  Score=46.85  Aligned_cols=66  Identities=20%  Similarity=0.275  Sum_probs=45.6

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...++..|+|++  .+...++....                  +-...+++|..+|||+   ..+.+.+++.+   .+.+
T Consensus        75 ~~~le~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~---~~~~  131 (304)
T PRK01372         75 QGLLELLGIPYT--GSGVLASALAM------------------DKLRTKLVWQAAGLPTPPWIVLTREEDLLA---AIDK  131 (304)
T ss_pred             HHHHHHcCCCcc--CCCHHHHHHHh------------------CHHHHHHHHHHCCCCCCCEEEEeCcchHHH---HHhh
Confidence            346777899988  54333332221                  1236889999999999   77788887666   3556


Q ss_pred             cCCCCcEEEEEecC
Q psy7785         480 FKLSIPLVVRLEGT  493 (525)
Q Consensus       480 ~~~G~PVVlKi~~~  493 (525)
                      +  |||+|+|-...
T Consensus       132 ~--~~P~ivKP~~g  143 (304)
T PRK01372        132 L--GLPLVVKPARE  143 (304)
T ss_pred             c--CCCEEEeeCCC
Confidence            4  99999997653

>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=91.05  E-value=0.72  Score=49.88  Aligned_cols=68  Identities=13%  Similarity=0.234  Sum_probs=46.2

Q ss_pred             HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-----EEEcChhHHHHHHHH
Q psy7785         402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-----IFASDLDEAASLVNA  476 (525)
Q Consensus       402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-----~lA~s~deAv~~~~a  476 (525)
                      ....++..|+|++  ....+++...                  .+-...+++|+.+|||+     ....+.+++.+   .
T Consensus        91 ~~~~~~~~g~~~~--g~~~~~~~~~------------------~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~---~  147 (450)
T PRK06111         91 FAERCKEEGIVFI--GPSADIIAKM------------------GSKIEARRAMQAAGVPVVPGITTNLEDAEEAIA---I  147 (450)
T ss_pred             HHHHHHHCCCeEE--CCCHHHHHHh------------------CCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHH---H
Confidence            3457778899876  4434434322                  12346789999999997     23467788776   4


Q ss_pred             hhhcCCCCcEEEEEecCC
Q psy7785         477 CKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       477 a~~~~~G~PVVlKi~~~~  494 (525)
                      ++++  |||+|+|-....
T Consensus       148 ~~~~--~~P~VvKP~~g~  163 (450)
T PRK06111        148 ARQI--GYPVMLKASAGG  163 (450)
T ss_pred             HHHh--CCCEEEEeCCCC
Confidence            5564  999999987654

>PRK06091 membrane protein FdrA; Validated

Probab=90.93  E-value=5.3  Score=44.39  Aligned_cols=169  Identities=18%  Similarity=0.218  Sum_probs=98.1

Q ss_pred             eceeEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceecc---------CCcEEEEecchhHH
Q psy7785         244 NPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGM---------DGNIGCLVNGAGLA  314 (525)
Q Consensus       244 NPl~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~---------~~rIaIitnsGG~g  314 (525)
                      -|+++..-|+           ...--||.|++++++     .+|+......|..++.         ++.|==+=+||=++
T Consensus       280 KPVVvlk~Gr-----------s~~g~~q~GVi~a~t-----leEl~~~A~~la~~~~~~~~~~~~~~~~irGly~GGTL~  343 (555)
T PRK06091        280 KPVVALFLGY-----------TPAVARDENVWFAST-----LDEAARLACLLSRVTAQRNAILPVSQGFICGLYTGGTLA  343 (555)
T ss_pred             CCEEEEEecC-----------CchhhhcCCeEEeCC-----HHHHHHHHHHHhcccccccccccccCCeeEEEecCchHH
Confidence            4888877662           111128999999844     4665554433332222         23342233455566


Q ss_pred             HHHHHHHHHcCCC----------------CCCeeeecCCCCH----------HHHHHHHHHHhcCCCccEEEEEec---c
Q psy7785         315 MATMDIIKLHGGE----------------PANFLDVGGGVNE----------ESIIQAFRIISSDSNVKCILVNVF---G  365 (525)
Q Consensus       315 vlaaD~~~~~Gl~----------------~aNPlDl~g~a~~----------~~~~~al~~ll~dp~vd~vlv~~~---~  365 (525)
                      --++ .+.+..+.                -.-.+|++.+...          ..=.+-+....+||++..|++-+.   +
T Consensus       344 ~Ea~-~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~a~dp~~~VillD~vlGyG  422 (555)
T PRK06091        344 AEAA-GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFG  422 (555)
T ss_pred             HHHH-HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCCcChHHHHHHHHHhccCCcceEEEEEeeeccC
Confidence            6666 55333321                1345899866432          222445666778999998887432   2


Q ss_pred             ccc-ChHHHHHHHHHHH--HhcCCCCcEEEEeCCc-----chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785         366 GIV-NCATIAKGLVNAC--KSFKLSIPLVVRLEGT-----NVQEGKRILDESKLPLIFASDLDEAASLVNACKS  431 (525)
Q Consensus       366 ~~~-~~~~ia~~i~~a~--~~~~~~kPivv~~~g~-----~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~  431 (525)
                      .-. +...++.+|.++.  +...+..++++...|+     +..+..+.|+++|+-++  +|-.+|++....+..
T Consensus       423 ah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~DpQ~~~~q~~~L~~aGv~v~--~sn~~a~~~a~~~~~  494 (555)
T PRK06091        423 ATADPAGSLVSAIQKACAARADGQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVV--DSLPEATLLAAALIR  494 (555)
T ss_pred             CCCChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCCCcCHHHHHHHHHhCCeEEE--cCcHHHHHHHHHHhh
Confidence            222 2345666666553  2111234445556674     34556789999999999  999999988887763

>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX

Probab=90.92  E-value=1.1  Score=44.88  Aligned_cols=64  Identities=17%  Similarity=0.229  Sum_probs=43.5

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...++..|+|++  .+++ ++....                  +-...+++|+++|||+   ..+.+.+++.+   ...+
T Consensus        65 ~~~le~~g~~~~--n~~~-~~~~~~------------------dK~~~~~~l~~~gip~P~t~~~~~~~~~~~---~~~~  120 (280)
T TIGR02144        65 ARLLEALGVPVI--NSSH-VIEACG------------------DKIFTYLKLAKAGVPTPRTYLAFDREAALK---LAEA  120 (280)
T ss_pred             HHHHHHCCCcEE--CcHH-HHHHHh------------------hHHHHHHHHHHCCcCCCCeEeeCCHHHHHH---HHHH
Confidence            446778899999  6653 332221                  1124677999999999   55667777766   3445


Q ss_pred             cCCCCcEEEEEec
Q psy7785         480 FKLSIPLVVRLEG  492 (525)
Q Consensus       480 ~~~G~PVVlKi~~  492 (525)
                      +  |||+|+|-..
T Consensus       121 ~--~~P~vvKP~~  131 (280)
T TIGR02144       121 L--GYPVVLKPVI  131 (280)
T ss_pred             c--CCCEEEEECc
Confidence            3  9999999754

The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.

>PRK06524 biotin carboxylase-like protein; Validated

Probab=90.89  E-value=0.94  Score=49.62  Aligned_cols=83  Identities=14%  Similarity=0.162  Sum_probs=50.2

Q ss_pred             CCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EE
Q psy7785         387 SIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IF  463 (525)
Q Consensus       387 ~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~l  463 (525)
                      ++|.++.++-+  ......|+..|+|+.  -...+++...+                  +-..+|+++++.|||+   .+
T Consensus       105 ~~~~~~fl~~D--G~iQ~lLE~lGIpy~--gP~a~asai~m------------------DK~~tK~l~~~aGIPtpp~~~  162 (493)
T PRK06524        105 PGGKACFVMFD--EETEALARQAGLEVM--HPPAELRHRLD------------------SKIVTTRLANEAGVPSVPHVL  162 (493)
T ss_pred             CCCceEEecCC--HHHHHHHHHCCCeEE--CcCHHHHHHhC------------------CHHHHHHHHHHcCCCCCCccc
Confidence            45555544433  233457888999996  44333333221                  2346899999999999   33


Q ss_pred             --EcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         464 --ASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       464 --A~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                        +.+.+++...++. ..+  |||||+|-....
T Consensus       163 ~~~~~~eel~~~~~~-~~I--GyPvVVKP~~GG  192 (493)
T PRK06524        163 GRVDSYDELSALAHG-AGL--GDDLVVQTPYGD  192 (493)
T ss_pred             ccCCCHHHHHHHHHh-ccC--CCcEEEEECCCC
Confidence              4566665542221 124  999999987443

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=90.87  E-value=0.82  Score=55.26  Aligned_cols=100  Identities=10%  Similarity=0.147  Sum_probs=60.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHH
Q psy7785         374 AKGLVNACKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGK  451 (525)
Q Consensus       374 a~~i~~a~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak  451 (525)
                      .+.|++++++.  +.=.+....|.  ......+.+++.|+++.  ....++++.+.                  +-..++
T Consensus        63 id~Ii~iak~~--~iDaI~PGyGflsE~~~~a~~le~~Gi~fi--Gps~e~i~~~~------------------DK~~ar  120 (1143)
T TIGR01235        63 IDEIIRVAKLN--GVDAIHPGYGFLSENSEFADACNKAGIIFI--GPKAEVMDQLG------------------DKVAAR  120 (1143)
T ss_pred             HHHHHHHHHHh--CCCEEEECCCccccCHHHHHHHHHcCCccc--CCCHHHHHHhc------------------CHHHHH
Confidence            34566666652  22223322221  22334566788899876  44344444331                  234689


Q ss_pred             HHHHHCCCCe---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785         452 RILDESKLPL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR  500 (525)
Q Consensus       452 ~LL~ayGIpv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~  500 (525)
                      ++++++|||+   .  ...+.+++.+   .++++  ||||++|-....-..|.+
T Consensus       121 ~la~~~GVPvpp~t~~~v~~~eea~~---~ae~i--GyPvIVKP~~GGGGrG~r  169 (1143)
T TIGR01235       121 NLAIKAGVPVVPGTDGPPETMEEVLD---FAAAI--GYPVIIKASWGGGGRGMR  169 (1143)
T ss_pred             HHHHHcCCCCCCCcccCcCCHHHHHH---HHHHc--CCCEEEEECCCCCCCccE
Confidence            9999999999   2  4578888887   45564  999999997765433333

This enzyme plays a role in gluconeogensis but not glycolysis.

>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]

Probab=90.75  E-value=0.73  Score=47.86  Aligned_cols=85  Identities=16%  Similarity=0.177  Sum_probs=61.0

Q ss_pred             hCCCCCCCccccCC----HHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVCLED----ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~~~~----~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~   94 (525)
                      ..|+|++++..++.    .....+....++| |++||+.-.    |.     + + |+....+.++.+++.+.....   
T Consensus       113 ~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~-p~~Vkp~~~----gS-----S-v-g~~~v~~~~d~~~~~e~a~~~---  177 (317)
T COG1181         113 AEGLPVAPYVALTRDEYSSVIVEEVEEGLGF-PLFVKPARE----GS-----S-V-GRSPVNVEGDLQSALELAFKY---  177 (317)
T ss_pred             HCCCCccceeeeecccchhHHHHHhhcccCC-CEEEEcCCc----cc-----e-e-eEEEeeeccchHHHHHHHHHh---
Confidence            78999999988874    3334567778897 999999644    11     1 2 444555667777755555432   


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                                -+.+++|+++. ++|+-+++..+..
T Consensus       178 ----------d~~vl~e~~~~-~rei~v~vl~~~~  201 (317)
T COG1181         178 ----------DRDVLREQGIT-GREIEVGVLGNDY  201 (317)
T ss_pred             ----------CCceeeccCCC-cceEEEEecCCcc
Confidence                      25689999998 9999999998855

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=90.64  E-value=0.63  Score=48.69  Aligned_cols=138  Identities=16%  Similarity=0.209  Sum_probs=77.9

Q ss_pred             EEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHh
Q psy7785         304 IGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKS  383 (525)
Q Consensus       304 IaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~  383 (525)
                      |+||.. |-++.+.+.++.+.|..+.- +|...+....      +.  .|.    .++   ....+.    +.|.+.++.
T Consensus         2 igiiG~-gql~~~l~~aa~~lG~~v~~-~d~~~~~p~~------~~--ad~----~~~---~~~~d~----~~i~~~a~~   60 (352)
T TIGR01161         2 VGILGG-GQLGRMLALAARPLGIKVHV-LDPDANSPAV------QV--ADH----VVL---APFFDP----AAIRELAES   60 (352)
T ss_pred             EEEECC-CHHHHHHHHHHHHcCCEEEE-ECCCCCCChh------Hh--Cce----eEe---CCCCCH----HHHHHHHhh
Confidence            677776 47888999999999975311 1111111111      11  121    111   112222    233333333


Q ss_pred             cCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe--
Q psy7785         384 FKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL--  461 (525)
Q Consensus       384 ~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv--  461 (525)
                        ++  ++..-...-.......+++.|+|++  ++++ ++...                  .+-...+++|+++|||+  
T Consensus        61 --~d--vit~e~e~i~~~~l~~l~~~g~~~~--p~~~-~~~~~------------------~dK~~~k~~l~~~gip~p~  115 (352)
T TIGR01161        61 --CD--VITFEFEHVDVEALEKLEARGVKLF--PSPD-ALAII------------------QDRLTQKQFLQKLGLPVPP  115 (352)
T ss_pred             --CC--EEEeCcCcCCHHHHHHHHhCCCeEC--CCHH-HHHHh------------------cCHHHHHHHHHHcCCCCCC
Confidence              32  2322111112345667888889888  6664 22222                  12335789999999999  


Q ss_pred             -EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785         462 -IFASDLDEAASLVNACKSFKLSIPLVVRLEG  492 (525)
Q Consensus       462 -~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~  492 (525)
                       ..+.+.+++.+   .++++  |||+|+|-..
T Consensus       116 ~~~~~~~~~~~~---~~~~~--g~P~vvKp~~  142 (352)
T TIGR01161       116 FLVIKDEEELDA---ALQEL--GFPVVLKART  142 (352)
T ss_pred             ccEeCCHHHHHH---HHHHc--CCCEEEEeCC
Confidence             77888888776   45564  9999999874

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK05784 phosphoribosylamine--glycine ligase; Provisional

Probab=90.38  E-value=1.5  Score=48.24  Aligned_cols=67  Identities=13%  Similarity=0.182  Sum_probs=46.3

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe----EEEcChhHHHHHHHHhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL----IFASDLDEAASLVNACK  478 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv----~lA~s~deAv~~~~aa~  478 (525)
                      ...|++.|+|+|  ....++++.-                  .+-..+|++|+.+|||+    ..+++.++|.+.   ++
T Consensus        86 ad~l~~~Gi~v~--Gps~~aa~le------------------~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~---~~  142 (486)
T PRK05784         86 ADVLREEGFPVF--GASSKCARIE------------------KSKVWARELMWKYSIPGRLRYKVFYDVEEAAKF---IE  142 (486)
T ss_pred             HHHHHhCCCCEE--CCcHHHHHHh------------------cCHHHHHHHHHHcCcCCCccceEeCCHHHHHHH---Hh
Confidence            457888999998  4433332221                  12347899999999996    566889988874   44


Q ss_pred             hcCCCCcEEEEEecCCh
Q psy7785         479 SFKLSIPLVVRLEGTNV  495 (525)
Q Consensus       479 ~~~~G~PVVlKi~~~~~  495 (525)
                      .   .+|||+|-.+.--
T Consensus       143 ~---~~PvVVKP~~~ag  156 (486)
T PRK05784        143 Y---GGSVAIKPARQAG  156 (486)
T ss_pred             h---cCCEEEeeCCCCC
Confidence            4   4699999876543

>TIGR02068 cya_phycin_syn cyanophycin synthetase

Probab=90.25  E-value=0.25  Score=58.17  Aligned_cols=44  Identities=20%  Similarity=0.348  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCCh
Q psy7785         447 VQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNV  495 (525)
Q Consensus       447 e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~  495 (525)
                      -..+|++|+++|||+   ..+.+.++|.+   +++++  |||||+|-...+-
T Consensus       214 K~~tk~lL~~~GIpvP~~~~~~s~~ea~~---~~~~i--g~PvVVKP~~g~~  260 (864)
T TIGR02068       214 KDLTKEILSDAGVPVPEGTVVQSAEDAWE---AAQDL--GYPVVIKPYDGNH  260 (864)
T ss_pred             HHHHHHHHHHcCcCCCCEEEECCHHHHHH---HHHHc--CCCEEEEECCCCC
Confidence            346899999999999   78899999887   46674  9999999876653

Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.

>TIGR01380 glut_syn glutathione synthetase, prokaryotic

Probab=89.57  E-value=1.5  Score=45.25  Aligned_cols=81  Identities=15%  Similarity=0.174  Sum_probs=52.0

Q ss_pred             CCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhccccccccC
Q psy7785          20 STVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        20 ~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      +..++|++.+..+++++.++.++.|  |+|+|+..-++|  +         ||... .+........ +.+.. .     
T Consensus       130 ~~~~vP~T~v~~~~~~~~~~~~~~g--~vVvKPl~G~~G--~---------gv~~v~~~~~~~~~~~-~~~~~-~-----  189 (312)
T TIGR01380       130 FPKVIPPTLVTRDKAEIRAFLAEHG--DIVLKPLDGMGG--E---------GIFRLDPGDPNFNSIL-ETMTQ-R-----  189 (312)
T ss_pred             CcCCCCCEEEeCCHHHHHHHHHHcC--CEEEEECCCCCC--c---------eEEEEcCCCccHHHHH-HHHHh-c-----
Confidence            4458999999899999999999886  799999654443  3         45543 3333333222 22211 1     


Q ss_pred             CCCCcccCeEEEEeeeCC--ceeEEEEEE
Q psy7785          99 PKTGINVNKVMVAKSVNI--TRETYFCIV  125 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~--~~E~~vgv~  125 (525)
                         +  -..+++|+|++.  +.++.+-+.
T Consensus       190 ---~--~~~~~vQ~yI~~~~~~D~Rv~vv  213 (312)
T TIGR01380       190 ---G--REPVMAQRYLPEIKEGDKRILLI  213 (312)
T ss_pred             ---c--CCcEEEEeccccccCCCEEEEEE
Confidence               1  146999999973  467777654

This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.

>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family

Probab=88.91  E-value=1.4  Score=43.81  Aligned_cols=65  Identities=20%  Similarity=0.243  Sum_probs=44.7

Q ss_pred             HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785         402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK  478 (525)
Q Consensus       402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~  478 (525)
                      ..+.++..|+|++  .++ +++....                  +-...+++|+.+|||+   ....+.+++.+   ...
T Consensus        65 ~~~~l~~~g~~~~--~~~-~~~~~~~------------------dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~---~~~  120 (277)
T TIGR00768        65 VARYLESLGVPVI--NSS-DAILNAG------------------DKFLTSQLLAKAGLPQPRTGLAGSPEEALK---LIE  120 (277)
T ss_pred             HHHHHHHCCCeee--CCH-HHHHHHh------------------hHHHHHHHHHHCCCCCCCEEEeCCHHHHHH---HHH
Confidence            3456777899998  665 3333221                  1235688999999999   66778877766   345


Q ss_pred             hcCCCCcEEEEEec
Q psy7785         479 SFKLSIPLVVRLEG  492 (525)
Q Consensus       479 ~~~~G~PVVlKi~~  492 (525)
                      ++  |||+|+|-..
T Consensus       121 ~~--~~p~vvKP~~  132 (277)
T TIGR00768       121 EI--GFPVVLKPVF  132 (277)
T ss_pred             hc--CCCEEEEECc
Confidence            63  8999999754

This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).

>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed

Probab=88.44  E-value=0.97  Score=47.04  Aligned_cols=72  Identities=18%  Similarity=0.246  Sum_probs=43.9

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHH---HHHHHH
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEA---ASLVNA  476 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deA---v~~~~a  476 (525)
                      ...|+..|+|+.  .+...+....                  .+-...|++|+++|||+   ....+.++.   ..  ..
T Consensus       100 q~lle~~gipy~--G~~~~a~~l~------------------~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~--~~  157 (333)
T PRK01966        100 QGLLELLGIPYV--GCGVLASALS------------------MDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLA--EI  157 (333)
T ss_pred             HHHHHHcCCCcc--CCCHHHHHHH------------------hCHHHHHHHHHHcCCCCCCEEEEeccccchhhHH--HH
Confidence            347777899988  4433322221                  12346899999999999   444444432   12  12


Q ss_pred             hhhcCCCCcEEEEEecCChHHH
Q psy7785         477 CKSFKLSIPLVVRLEGTNVQEG  498 (525)
Q Consensus       477 a~~~~~G~PVVlKi~~~~~~~~  498 (525)
                      .+.  .|||+|+|=....-..|
T Consensus       158 ~~~--~~~P~vVKP~~~gsS~G  177 (333)
T PRK01966        158 EAK--LGLPVFVKPANLGSSVG  177 (333)
T ss_pred             HHh--cCCCEEEEeCCCCCccC
Confidence            345  49999999876554333

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=88.41  E-value=1.8  Score=48.75  Aligned_cols=140  Identities=16%  Similarity=0.186  Sum_probs=80.3

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNA  380 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a  380 (525)
                      ..+|+||..| -.|.+.+-++.+.|+.+. .+|...++....+        .    |-.++   ....+.+    .+.+.
T Consensus        22 ~k~IgIIGgG-qlg~mla~aA~~lG~~Vi-~ld~~~~apa~~~--------A----D~~~v---~~~~D~~----~l~~~   80 (577)
T PLN02948         22 ETVVGVLGGG-QLGRMLCQAASQMGIKVK-VLDPLEDCPASSV--------A----ARHVV---GSFDDRA----AVREF   80 (577)
T ss_pred             CCEEEEECCC-HHHHHHHHHHHHCCCEEE-EEeCCCCCchhhh--------C----ceeee---CCCCCHH----HHHHH
Confidence            3579998766 577788888888897531 1233222221111        1    21222   1122222    34444


Q ss_pred             HHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCC
Q psy7785         381 CKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLP  460 (525)
Q Consensus       381 ~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIp  460 (525)
                      +++  .+  ++......-..+..+.+++.|+|++  .+++. +...                  .+-...|++|+..|||
T Consensus        81 a~~--~d--vIt~e~e~v~~~~l~~le~~gi~v~--ps~~a-l~i~------------------~DK~~~K~~l~~~GIp  135 (577)
T PLN02948         81 AKR--CD--VLTVEIEHVDVDTLEALEKQGVDVQ--PKSST-IRII------------------QDKYAQKVHFSKHGIP  135 (577)
T ss_pred             HHH--CC--EEEEecCCCCHHHHHHHHhcCCccC--CCHHH-HHHh------------------cCHHHHHHHHHHCCcC
Confidence            443  22  3322212212345578889999987  66442 2222                  1223578999999999


Q ss_pred             e---EEEcChhHHHHHHHHhhhcCCCCcEEEEEe
Q psy7785         461 L---IFASDLDEAASLVNACKSFKLSIPLVVRLE  491 (525)
Q Consensus       461 v---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~  491 (525)
                      +   ..+.+.+++.+   +++++  |||+|+|-.
T Consensus       136 tp~~~~v~~~~el~~---~~~~i--g~P~VvKP~  164 (577)
T PLN02948        136 LPEFMEIDDLESAEK---AGDLF--GYPLMLKSR  164 (577)
T ss_pred             CCCeEEeCCHHHHHH---HHHhc--CCcEEEEeC
Confidence            9   77778888765   45564  999999997

>KOG0370|consensus

Probab=88.32  E-value=1.7  Score=50.37  Aligned_cols=114  Identities=16%  Similarity=0.199  Sum_probs=75.1

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ..||..|+|.-.++.+||..++++.|| ||.+.+-....|  -         ..-+..+.++++...++-..   .+   
T Consensus      1043 ~i~v~Qp~Wkelt~~~eA~~F~~~VgY-P~lvRPSYVLSG--a---------AMnv~~~~~dl~~~L~~A~~---vs--- 1104 (1435)
T KOG0370|consen 1043 SIGVDQPAWKELTSLEEAKKFAEKVGY-PVLVRPSYVLSG--A---------AMNVVYSESDLKSYLEQASA---VS--- 1104 (1435)
T ss_pred             HcCCCchhhhhhccHHHHHHHHHhcCC-ceEecccceecc--h---------hhhhhhcHHHHHHHHHHHhh---cC---
Confidence            789999999999999999999999998 999999644221  1         11123466777766655432   11   


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEE-EcCCCCccEEEecCCCCcccccccccCCCeEEEEecCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIV-QDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDV  163 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~-~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p  163 (525)
                       +    -..|.|.+|+...+|+-+-.. +|+..  -+..+|    -+||+---+.-|.  ++.+||
T Consensus      1105 -~----dhPVVisKfie~AkEidvDAVa~~G~~--~~haiS----EHvEnAGVHSGDA--tlv~Pp 1157 (1435)
T KOG0370|consen 1105 -P----DHPVVISKFIEGAKEIDVDAVASDGKV--LVHAIS----EHVENAGVHSGDA--TLVLPP 1157 (1435)
T ss_pred             -C----CCCEEhHHhhcccceechhhhccCCeE--EEEehh----hhhhcccccCCce--eEeCCc
Confidence             1    135899999999999987543 44332  233334    2566655544454  565666

>PRK05246 glutathione synthetase; Provisional

Probab=88.25  E-value=2.4  Score=43.76  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=51.8

Q ss_pred             CCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhccccccccCCCC
Q psy7785          23 HSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQTPKT  101 (525)
Q Consensus        23 pvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~~~~~  101 (525)
                      ++|++.+.++++++.++.++.|  |+|+|+..-++|  +         ||.+. .+..++....+.+ .. .        
T Consensus       134 ~vP~T~~~~~~~~~~~~~~~~~--~vVlKP~~G~~G--~---------gV~~i~~~~~~~~~~~~~l-~~-~--------  190 (316)
T PRK05246        134 LMPPTLVTRDKAEIRAFRAEHG--DIILKPLDGMGG--A---------GIFRVKADDPNLGSILETL-TE-H--------  190 (316)
T ss_pred             cCCCEEEeCCHHHHHHHHHHCC--CEEEEECCCCCc--c---------ceEEEeCCCccHHHHHHHH-HH-c--------
Confidence            7899999999999999999886  899999654443  3         55555 3344443333332 21 1        


Q ss_pred             CcccCeEEEEeeeCC--ceeEEEEEE
Q psy7785         102 GINVNKVMVAKSVNI--TRETYFCIV  125 (525)
Q Consensus       102 g~~~~~vlVee~~~~--~~E~~vgv~  125 (525)
                      +  -..++||++++.  +.++.+-+.
T Consensus       191 ~--~~~~lvQ~~I~~~~~~D~Rv~vv  214 (316)
T PRK05246        191 G--REPVMAQRYLPEIKEGDKRILLV  214 (316)
T ss_pred             c--CCeEEEEeccccCCCCCEEEEEE
Confidence            1  146999999964  466766665

>PRK14572 D-alanyl-alanine synthetase A; Provisional

Probab=88.16  E-value=1.1  Score=46.97  Aligned_cols=70  Identities=13%  Similarity=0.106  Sum_probs=43.7

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEc------ChhHHHHH
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFAS------DLDEAASL  473 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~------s~deAv~~  473 (525)
                      ...|+..|+|++  .+...+.....                  +-...|++|+++|||+   ....      +.+++.+ 
T Consensus       107 q~~le~~gipy~--Gs~~~a~~i~~------------------DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~~~~~~-  165 (347)
T PRK14572        107 QGFLDTLGIPYT--GSGVLASALAM------------------DKTRANQIFLQSGQKVAPFFELEKLKYLNSPRKTLL-  165 (347)
T ss_pred             HHHHHHcCcCcC--CCCHHHHHHHh------------------CHHHHHHHHHHcCCCCCCEEEEEccccccChHHHHH-
Confidence            457888999987  44333332221                  2236899999999999   3332      3334433 


Q ss_pred             HHHhhhcCCCCcEEEEEecCChHH
Q psy7785         474 VNACKSFKLSIPLVVRLEGTNVQE  497 (525)
Q Consensus       474 ~~aa~~~~~G~PVVlKi~~~~~~~  497 (525)
                        ..+++  |||+|+|=....-+.
T Consensus       166 --~~~~l--~~PvvVKP~~ggsS~  185 (347)
T PRK14572        166 --KLESL--GFPQFLKPVEGGSSV  185 (347)
T ss_pred             --HHHhc--CCCEEEecCCCCCCC
Confidence              23454  999999986654433

>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein

Probab=87.81  E-value=3.1  Score=43.22  Aligned_cols=38  Identities=8%  Similarity=0.214  Sum_probs=28.1

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhc--CCCcEEEEEeecc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDL--NFKEYVIKAQILA   56 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~l--g~~PvVlK~~~~~   56 (525)
                      +.|||||++.++.+.+.+.+...++  +++|||+|+..-.
T Consensus        47 ~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs   86 (317)
T TIGR02291        47 AAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQGS   86 (317)
T ss_pred             HcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECCCC
Confidence            7999999999888877555555555  5447999996433

Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional

Probab=87.60  E-value=0.53  Score=54.51  Aligned_cols=51  Identities=29%  Similarity=0.312  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHh
Q psy7785         447 VQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRI  501 (525)
Q Consensus       447 e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~  501 (525)
                      -..+|++|+++|||+   ..+.+.+++...   ++++ .|||||+|-...+-..|-.+
T Consensus       489 K~~tk~lL~~~GIpvP~~~~~~~~e~a~~~---~~~~-~g~PvVVKP~~g~~G~GV~~  542 (752)
T PRK02471        489 KVVTKKILAEAGFPVPAGDEFTSLEEALAD---YSLF-ADKAIVVKPKSTNFGLGISI  542 (752)
T ss_pred             HHHHHHHHHHCCcCCCCEEEEcCHHHHHHH---HHHh-cCCCEEEEECCCCCcCCeEE
Confidence            346899999999999   678888888773   4342 38999999987765555443

>PRK14569 D-alanyl-alanine synthetase A; Provisional

Probab=87.20  E-value=1.6  Score=44.62  Aligned_cols=64  Identities=19%  Similarity=0.243  Sum_probs=40.5

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...|+..|+|+.  .+..+++....                  +-..+|++|+.+|||+   ....+..   .   ..+.
T Consensus        75 ~~~le~~gip~~--Gs~~~a~~l~~------------------DK~~~k~~l~~~gIptp~~~~~~~~~---~---~~~~  128 (296)
T PRK14569         75 SALLEMLEIKHT--SSSMKSSVITM------------------DKMISKEILMHHRMPTPMAKFLTDKL---V---AEDE  128 (296)
T ss_pred             HHHHHHcCCCee--CCCHHHHHHHH------------------CHHHHHHHHHHCCCCCCCeEEEchhh---h---hHhh
Confidence            457888999987  44433333221                  2336899999999999   3443321   1   1334


Q ss_pred             cCCCCcEEEEEecCC
Q psy7785         480 FKLSIPLVVRLEGTN  494 (525)
Q Consensus       480 ~~~G~PVVlKi~~~~  494 (525)
                        .|||+|+|=....
T Consensus       129 --~~~P~vVKP~~gg  141 (296)
T PRK14569        129 --ISFPVAVKPSSGG  141 (296)
T ss_pred             --cCCCEEEEeCCCC
Confidence              3999999976544

>KOG2799|consensus

Probab=87.10  E-value=0.64  Score=48.28  Aligned_cols=42  Identities=43%  Similarity=0.631  Sum_probs=39.0

Q ss_pred             CCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhH
Q psy7785         482 LSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFI  523 (525)
Q Consensus       482 ~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (525)
                      .-.|+|+.+.||+.++|+.++.++++.....+++|+|++-++
T Consensus       371 ~~ipiv~rlqgt~v~~ak~~i~~sgmri~~~deldeaa~~~v  412 (434)
T KOG2799|consen  371 LNIPIVVRLQGTRVEAAKPIINTSGMRIRSFDELDEAAKKAV  412 (434)
T ss_pred             cCCCEEEEecCCchhhhhhhHhhcCceEEechhhhHHhhhhc
Confidence            368999999999999999999999999999999999998874

>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]

Probab=86.99  E-value=2  Score=44.59  Aligned_cols=66  Identities=23%  Similarity=0.401  Sum_probs=44.3

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      .+.++..|++++  .+|..-..+-                   +-..+.++|+..|+|+   .++.+.+++...  .++.
T Consensus        97 ~~~~E~~G~~vi--N~p~~i~~~~-------------------nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~--~~~~  153 (318)
T COG0189          97 LRLAERKGVPVI--NDPQSIRRCR-------------------NKLYTTQLLAKAGIPVPPTLITRDPDEAAEF--VAEH  153 (318)
T ss_pred             HHHHHHcCCeEE--CCHHHHHhhh-------------------hHHHHHHHHHhcCCCCCCEEEEcCHHHHHHH--HHHh
Confidence            346667788888  6654322221                   1224778999999988   777787777764  4455


Q ss_pred             cCCCCcEEEEEecC
Q psy7785         480 FKLSIPLVVRLEGT  493 (525)
Q Consensus       480 ~~~G~PVVlKi~~~  493 (525)
                        .|||||+|-...
T Consensus       154 --~g~pvVlKp~~G  165 (318)
T COG0189         154 --LGFPVVLKPLDG  165 (318)
T ss_pred             --cCCCEEEeeCCC
Confidence              489999998543

>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis

Probab=86.96  E-value=0.72  Score=43.59  Aligned_cols=32  Identities=28%  Similarity=0.475  Sum_probs=25.2

Q ss_pred             HHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEE
Q psy7785         454 LDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRL  490 (525)
Q Consensus       454 L~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi  490 (525)
                      |++.|||+   ..+.+.++..+   ++.++  |||+|+|-
T Consensus         1 l~~~gip~~~~~~i~~~~~l~~---a~~~i--G~P~vlK~   35 (172)
T PF02222_consen    1 LDELGIPTAPYATIDSLEDLEE---AAESI--GFPAVLKT   35 (172)
T ss_dssp             HHHTT--B-EEEEESSHHHHHH---HHHHH--TSSEEEEE
T ss_pred             CcccCCCCCCeEEECCHHHHHH---HHHHc--CCCEEEEc
Confidence            68899999   88999998887   56675  99999994

This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....

>PRK10446 ribosomal protein S6 modification protein; Provisional

Probab=86.59  E-value=2.8  Score=42.90  Aligned_cols=66  Identities=15%  Similarity=0.125  Sum_probs=43.3

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      .+.|+..|++++  .++.. +....                  +-...+++|+++|||+   .++.+.+++.+   .+++
T Consensus        77 ~~~le~~g~~v~--n~~~a-~~~~~------------------dK~~~~~~l~~~gip~P~t~~~~~~~~~~~---~~~~  132 (300)
T PRK10446         77 LRQFEMLGSYPL--NESVA-IARAR------------------DKLRSMQLLARQGIDLPVTGIAHSPDDTSD---LIDM  132 (300)
T ss_pred             HHHHHHCCCcee--cCHHH-HHhhh------------------cHHHHHHHHHHcCCCCCCEEEeCCHHHHHH---HHHH
Confidence            456777887777  66652 22211                  1235789999999998   55667776665   3444


Q ss_pred             cCCCCcEEEEEecC
Q psy7785         480 FKLSIPLVVRLEGT  493 (525)
Q Consensus       480 ~~~G~PVVlKi~~~  493 (525)
                      + .|||+|+|-...
T Consensus       133 ~-~~~P~VvKP~~g  145 (300)
T PRK10446        133 V-GGAPLVVKLVEG  145 (300)
T ss_pred             h-CCCCEEEEECCC
Confidence            3 279999997544

>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6

Probab=86.48  E-value=1.3  Score=41.03  Aligned_cols=39  Identities=26%  Similarity=0.266  Sum_probs=34.6

Q ss_pred             CCcEEEEEecCChH-----HHHHhhhhCCCCceeccCHHHHHHHhH
Q psy7785         483 SIPLVVRLEGTNVQ-----EGKRILDESKLPLIFASDLDEAANWFI  523 (525)
Q Consensus       483 G~PVVlKi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (525)
                      .-|||..++||+.+     +.+++|.+.|+.+  +++.++|+++|.
T Consensus       108 ~~pvVa~v~GT~~dpq~~~~~~~~L~~~G~~v--~~s~~~A~~~A~  151 (153)
T PF00549_consen  108 KKPVVARVCGTNADPQGRMGQAGALEDAGVIV--AESNAQAARAAG  151 (153)
T ss_dssp             -SEEEEEEESTTCHTTSCHHHHHHHHCTTCSC--HHHHHHHHHHHT
T ss_pred             CCcEEEEeeeecCCCCCcHHHHHHHHhCCCcc--cccHHHHHHHcC
Confidence            46999999999999     9999999988666  999999998874

2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....

>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Probab=86.06  E-value=0.7  Score=53.13  Aligned_cols=52  Identities=25%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             HHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785         448 QEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD  503 (525)
Q Consensus       448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~  503 (525)
                      ..+|++|+++||||   ..+.+.+++.+   .+.++ .|||||+|=.+.+-..|.-+..
T Consensus       477 ~~TK~iL~~aGIPVP~g~~~~~~~~a~~---~~~~~-~g~PVVVKP~~g~~G~GVsi~~  531 (737)
T TIGR01435       477 VVTKKVLAEAGFRVPFGDEFSSQALALE---AFSLF-ENKAIVVKPKSTNYGLGITIFK  531 (737)
T ss_pred             HHHHHHHHHcCcCCCCEEEECCHHHHHH---HHHHh-cCCCEEEeeCCCCCcCCeEEec
Confidence            46899999999999   67788877776   34443 2799999988877766665443

gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.

>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised

Probab=85.83  E-value=1.9  Score=34.54  Aligned_cols=51  Identities=20%  Similarity=0.408  Sum_probs=45.0

Q ss_pred             HHHHHHHHCCCCeEEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCc
Q psy7785         449 EGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL  509 (525)
Q Consensus       449 eak~LL~ayGIpv~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~  509 (525)
                      .+.++|++.||++.+..++.+.-.          |.=+++|+...+.++.+++|+++|+.+
T Consensus        16 ~~ek~lk~~gi~~~liP~P~~i~~----------~CG~al~~~~~d~~~i~~~l~~~~i~~   66 (73)
T PF11823_consen   16 KAEKLLKKNGIPVRLIPTPREISA----------GCGLALRFEPEDLEKIKEILEENGIEY   66 (73)
T ss_pred             HHHHHHHHCCCcEEEeCCChhccC----------CCCEEEEEChhhHHHHHHHHHHCCCCe
Confidence            577899999999999999986532          899999999999999999999998776

This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.

>PRK14570 D-alanyl-alanine synthetase A; Provisional

Probab=85.66  E-value=5.2  Score=42.35  Aligned_cols=66  Identities=17%  Similarity=0.131  Sum_probs=41.8

Q ss_pred             HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEc------ChhHHHHHH
Q psy7785         404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFAS------DLDEAASLV  474 (525)
Q Consensus       404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~------s~deAv~~~  474 (525)
                      ..|+..|||+.  .+...+....+                  +-..+|++|+++|||+   ....      +.+++... 
T Consensus       107 glle~~giPy~--Gs~~~asal~~------------------DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~~~~~~~~-  165 (364)
T PRK14570        107 GFLKVMDIPCV--GAGILGSAISI------------------NKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKD-  165 (364)
T ss_pred             HHHHHcCCCcc--CCCHHHHHHHH------------------CHHHHHHHHHHcCCCCCCEEEEeccccccchHHHHHH-
Confidence            47788899998  54433322211                  2336899999999998   2222      34555432 


Q ss_pred             HHhhhcCCCCcEEEEEecC
Q psy7785         475 NACKSFKLSIPLVVRLEGT  493 (525)
Q Consensus       475 ~aa~~~~~G~PVVlKi~~~  493 (525)
                       ....+  ||||++|-...
T Consensus       166 -~~~~l--g~PviVKP~~~  181 (364)
T PRK14570        166 -IKEVL--GYPVIVKPAVL  181 (364)
T ss_pred             -HHHhc--CCCEEEEeCCC
Confidence             23454  99999999763

>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=84.35  E-value=10  Score=40.35  Aligned_cols=79  Identities=19%  Similarity=0.322  Sum_probs=57.0

Q ss_pred             HHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe--EEEcChhHHHHHHHHhhhcCC
Q psy7785         405 ILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL--IFASDLDEAASLVNACKSFKL  482 (525)
Q Consensus       405 ~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv--~lA~s~deAv~~~~aa~~~~~  482 (525)
                      .|.+.||++.  -+.-+++...-                  +-...++.++..|+|+  .++.+.+++.+   ...+  +
T Consensus        95 ~l~~~gV~vv--gs~~eaI~iae------------------Dr~~fke~m~eigi~~P~~~~~~~~e~~~---~~~~--i  149 (400)
T COG0458          95 VLEKYGVEVV--GSDPEAIEIAE------------------DKKLFKEAMREIGIPVPSRIAHSVEEADE---IADE--I  149 (400)
T ss_pred             chhhcCCEEE--ecCHHHhhhhh------------------hHHHHHHHHHHcCCCCCccccccHHHHhh---hHhh--c
Confidence            4566688888  66666654432                  2235789999999999  78999999998   4556  4


Q ss_pred             CCcEEEEE----------ecCChHHHHHhhhh-CCCC
Q psy7785         483 SIPLVVRL----------EGTNVQEGKRILDE-SKLP  508 (525)
Q Consensus       483 G~PVVlKi----------~~~~~~~~~~~~~~-~~~~  508 (525)
                      ||||++|-          .-.|.+|=+++... .+.+
T Consensus       150 g~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s  186 (400)
T COG0458         150 GYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS  186 (400)
T ss_pred             CCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccC
Confidence            99999995          23477777777776 4433

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=84.35  E-value=1.2  Score=47.11  Aligned_cols=39  Identities=18%  Similarity=0.401  Sum_probs=32.4

Q ss_pred             HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785         449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEG  492 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~  492 (525)
                      .-|++|+++|||+   ..+.+.+++.+   +++++  |||+|+|-..
T Consensus       103 ~~k~~l~~~Gip~p~~~~v~s~~~l~~---~~~~~--g~P~vlKp~~  144 (372)
T PRK06019        103 TEKQFLDKLGIPVAPFAVVDSAEDLEA---ALADL--GLPAVLKTRR  144 (372)
T ss_pred             HHHHHHHHCCCCCCCceEeCCHHHHHH---HHHHc--CCcEEEEeCC
Confidence            5788999999999   78889888876   45564  9999999963

>PRK12419 riboflavin synthase subunit beta; Provisional

Probab=82.26  E-value=41  Score=31.36  Aligned_cols=122  Identities=15%  Similarity=0.146  Sum_probs=70.5

Q ss_pred             cEEEEec------chhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEE--ec-ccccC----
Q psy7785         303 NIGCLVN------GAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVN--VF-GGIVN----  369 (525)
Q Consensus       303 rIaIitn------sGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~--~~-~~~~~----  369 (525)
                      ||+||..      .-.+=--+.|.+..+|.+..|. |+.--+-.-.+.-+++.+++..++|+++..  +. |....    
T Consensus        12 riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V   90 (158)
T PRK12419         12 RIAFIQARWHADIVDQARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHEFV   90 (158)
T ss_pred             EEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhHHH
Confidence            6666653      1223333678888999876665 544333333456667777888889999973  22 33333    


Q ss_pred             hHHHHHHHHHHHHhcCCCCcEEEEeCCc-chHHH--HHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785         370 CATIAKGLVNACKSFKLSIPLVVRLEGT-NVQEG--KRILDESKLPLIFASDLDEAASLVNACKS  431 (525)
Q Consensus       370 ~~~ia~~i~~a~~~~~~~kPivv~~~g~-~~~~~--~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~  431 (525)
                      +..++++|.+..-+  +++||....... +.+++  ++-+...|.-    .--.+|+.++.++..
T Consensus        91 ~~~v~~gl~~vsl~--~~~PV~fGVLT~~~~eqA~~rqa~~Ra~~~----nKG~eaA~aalem~~  149 (158)
T PRK12419         91 AQAVIDGLMRVQLD--TEVPVFSVVLTPHHFHESEEHHDFFRAHFV----VKGAEAAHACADTLL  149 (158)
T ss_pred             HHHHHHHHHHHHhc--cCCCEEEEecCCCcHHHHHHHHHHhhcCcc----ccHHHHHHHHHHHHH
Confidence            34556666666555  789998765543 33333  3344445543    334566666655543

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=81.49  E-value=62  Score=32.53  Aligned_cols=62  Identities=13%  Similarity=0.221  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHCCCCeEEEcChhHH---HHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCc--eeccCHHHHHH
Q psy7785         446 NVQEGKRILDESKLPLIFASDLDEA---ASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL--IFASDLDEAAN  520 (525)
Q Consensus       446 ~e~eak~LL~ayGIpv~lA~s~deA---v~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  520 (525)
                      +.+.=++|++.|||.+.++++.-.+   -++.++|.++  |.||+|             ++++.++|  .++++++++++
T Consensus       185 s~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~l--gi~viv-------------I~RP~~~~~~~~~~~~~el~~  249 (256)
T TIGR00715       185 SEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEAL--GINVIR-------------IARPQTIPGVAIFDDISQLNQ  249 (256)
T ss_pred             CHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHc--CCcEEE-------------EeCCCCCCCCccCCCHHHHHH
Confidence            5556689999999999888877444   4556788886  999987             33444443  35788888887


Q ss_pred             Hh
Q psy7785         521 WF  522 (525)
Q Consensus       521 ~~  522 (525)
                      |-
T Consensus       250 ~l  251 (256)
T TIGR00715       250 FV  251 (256)
T ss_pred             HH
Confidence            63

This enzyme was found to be a monomer by gel filtration.

>PRK14568 vanB D-alanine--D-lactate ligase; Provisional

Probab=81.19  E-value=3.1  Score=43.46  Aligned_cols=65  Identities=11%  Similarity=0.189  Sum_probs=40.5

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...|+..|+|++  .+...+....                  .+-...|++|+++|||+   ....+.++. .    .+.
T Consensus       109 q~lle~~gipy~--G~~~~asai~------------------~DK~~~k~~l~~~GIp~p~~~~~~~~~~~-~----~~~  163 (343)
T PRK14568        109 QGLLELSGIPYV--GCDIQSSALC------------------MDKSLAYIVAKNAGIATPAFWTVTADERP-D----AAT  163 (343)
T ss_pred             HHHHHHcCCCcc--CCCHHHHHHH------------------hCHHHHHHHHHHcCcCcCCEEEEECCchh-h----hhh
Confidence            347788899988  4433322211                  11235799999999999   444444432 1    234


Q ss_pred             cCCCCcEEEEEecCC
Q psy7785         480 FKLSIPLVVRLEGTN  494 (525)
Q Consensus       480 ~~~G~PVVlKi~~~~  494 (525)
                        .|||+|+|=....
T Consensus       164 --l~~P~iVKP~~~g  176 (343)
T PRK14568        164 --LTYPVFVKPARSG  176 (343)
T ss_pred             --cCCCEEEEeCCCC
Confidence              3999999965544

>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6

Probab=80.82  E-value=5.1  Score=37.89  Aligned_cols=67  Identities=22%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             CCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhccccccccCCCCC
Q psy7785          24 STDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQTPKTG  102 (525)
Q Consensus        24 vp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~~~~~g  102 (525)
                      +|++.+.++.++..++.++.+.  +|||+-.-.+|+           ||..- .+.......++.+...          +
T Consensus        12 ~P~T~vs~~~~~i~~f~~~~~~--~VlKPl~g~gG~-----------gV~~i~~~~~n~~~i~e~~~~~----------~   68 (173)
T PF02955_consen   12 IPPTLVSRDKEEIRAFIEEHGD--IVLKPLDGMGGR-----------GVFRISRDDPNLNSILETLTKN----------G   68 (173)
T ss_dssp             S--EEEES-HHHHHHHHHHHSS--EEEEESS--TTT-----------T-EEE-TT-TTHHHHHHHHTTT----------T
T ss_pred             CcCEEEECCHHHHHHHHHHCCC--EEEEECCCCCCc-----------CEEEEcCCCCCHHHHHHHHHhc----------C
Confidence            5889999999999999999884  999997666654           34443 4444455555444321          1


Q ss_pred             cccCeEEEEeeeC
Q psy7785         103 INVNKVMVAKSVN  115 (525)
Q Consensus       103 ~~~~~vlVee~~~  115 (525)
                        -..+++|+|++
T Consensus        69 --~~~~mvQ~flp   79 (173)
T PF02955_consen   69 --ERPVMVQPFLP   79 (173)
T ss_dssp             --TS-EEEEE--G
T ss_pred             --CccEEEEeccc
Confidence              25799999997

3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=80.62  E-value=3.6  Score=48.24  Aligned_cols=73  Identities=14%  Similarity=0.189  Sum_probs=44.5

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEc------ChhHHHHH
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFAS------DLDEAASL  473 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~------s~deAv~~  473 (525)
                      ...|+..|||+.  .+...+....                  .+-..+|++|+.+|||+   ...+      +.+++.. 
T Consensus       545 q~~le~~gipy~--Gs~~~asal~------------------~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~~~~~~~-  603 (809)
T PRK14573        545 QGFLEIIGKPYT--GPSLAFSAIA------------------MDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLA-  603 (809)
T ss_pred             HHHHHHcCCCee--CCCHHHHHHH------------------cCHHHHHHHHHHCCCCCCCEEEEechhcccChHHHHH-
Confidence            457888999988  4333222211                  12346899999999999   3333      2233322 


Q ss_pred             HHHhhhcCCCCcEEEEEecCChHHHH
Q psy7785         474 VNACKSFKLSIPLVVRLEGTNVQEGK  499 (525)
Q Consensus       474 ~~aa~~~~~G~PVVlKi~~~~~~~~~  499 (525)
                       +..+++  |||+++|=....-+.|.
T Consensus       604 -~~~~~l--g~P~iVKP~~~GsS~Gv  626 (809)
T PRK14573        604 -HIVEAF--SFPMFVKTAHLGSSIGV  626 (809)
T ss_pred             -HHHHhc--CCCEEEeeCCCCCCCCE
Confidence             134564  99999999775544443

>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase

Probab=80.03  E-value=6.5  Score=40.14  Aligned_cols=69  Identities=19%  Similarity=0.237  Sum_probs=41.9

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEc-ChhHHHHH--HHH
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFAS-DLDEAASL--VNA  476 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~-s~deAv~~--~~a  476 (525)
                      ...++..|+|++  .+...++....                  +-...+++|+++|||+   ..+. +.++....  ...
T Consensus        82 ~~~le~~gip~~--g~~~~~~~~~~------------------dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~  141 (315)
T TIGR01205        82 QGLLELMGIPYT--GSGVLASALSM------------------DKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQV  141 (315)
T ss_pred             HHHHHHcCCCcc--CCCHHHHHHHH------------------CHHHHHHHHHHCCCCCCCEEEEecccccchhhhHHHH
Confidence            457888999998  55444333221                  1236889999999999   4444 43322110  012


Q ss_pred             hhhcCCCCcEEEEEecC
Q psy7785         477 CKSFKLSIPLVVRLEGT  493 (525)
Q Consensus       477 a~~~~~G~PVVlKi~~~  493 (525)
                      ...  .|||+|+|=...
T Consensus       142 ~~~--~~~P~vvKP~~~  156 (315)
T TIGR01205       142 AEP--LGFPVIVKPARE  156 (315)
T ss_pred             HHh--cCCCEEEEeCCC
Confidence            235  499999997654

but a number of antibiotic resistance proteins score above the trusted cutoff of this model.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	525
2fp4_B	395	Crystal Structure Of Pig Gtp-Specific Succinyl-Coa		1e-112
2fp4_B	395	Crystal Structure Of Pig Gtp-Specific Succinyl-Coa		6e-08
1euc_B	396	Crystal Structure Of Dephosphorylated Pig Heart, Gt		1e-111
1euc_B	396	Crystal Structure Of Dephosphorylated Pig Heart, Gt		5e-08
1eud_B	396	Crystal Structure Of Phosphorylated Pig Heart, Gtp-		1e-110
1eud_B	396	Crystal Structure Of Phosphorylated Pig Heart, Gtp-		1e-06
1scu_B	388	The Crystal Structure Of Succinyl-Coa Synthetase Fr		4e-72
1cqi_B	385	Crystal Structure Of The Complex Of Adp And Mg2+ Wi		5e-72
1jll_B	388	Crystal Structure Analysis Of The E197betaa Mutant		2e-71
3ufx_B	397	Thermus Aquaticus Succinyl-coa Synthetase In Comple		4e-55
3mwe_A	425	Truncated Human Atp-Citrate Lyase With Tartrate Bou		2e-06
3pff_A	829	Truncated Human Atp-Citrate Lyase With Adp And Tart		3e-06
3mwd_A	425	Truncated Human Atp-Citrate Lyase With Citrate Boun		1e-05

>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 395

Iteration: 1
 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/391 (51%), Positives = 269/391 (68%), Gaps = 33/391 (8%)
Query: 33  ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92
           A  A    K LN KE V+KAQILAGGRG G F +G K GVH T + + +  + ++MIG+ 
Sbjct: 28  ANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYN 87
Query: 93  LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT 152
           L TKQTPK G+ VNKVMVA++++I+RETY  I+ DR  NGPV++ SP GG DIE VAA  
Sbjct: 88  LATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASN 147
Query: 153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFL 212
           P L+    ID+ +GI +S AQ                                 ++A+ L
Sbjct: 148 PELIFKEQIDIIEGIKDSQAQ---------------------------------RMAENL 174
Query: 213 EFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQK 272
            F G L+ +AA +++KL+NLFL +DATQ+E+NP  ET E +V+  DAKINFDDNAEFRQK
Sbjct: 175 GFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQK 234
Query: 273 NIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFL 332
           +IF+ ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFL
Sbjct: 235 DIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFL 294
Query: 333 DVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVV 392
           D+GGGV E  + QAF+++++D  V+ ILVN+FGGIVNCA IA G+  AC+  +L +PLVV
Sbjct: 295 DLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVV 354
Query: 393 RLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           RLEGTNV E + IL  S LP+  A DL++AA
Sbjct: 355 RLEGTNVHEAQNILTNSGLPITSAVDLEDAA 385

>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 395

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
           A  +  AC+  +L +PLVVRLEGTNV E + IL  S LP+  A DL++AA
Sbjct: 336 ANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAA 385

>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 396

Iteration: 1
 Score =  398 bits (1023), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/391 (51%), Positives = 268/391 (68%), Gaps = 33/391 (8%)
Query: 33  ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92
           A  A    K LN KE V+KAQILAGGRG G F +G K GVH T + + +  + ++MIG+ 
Sbjct: 29  ANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYN 88
Query: 93  LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT 152
           L TKQTPK G+ VNKVMVA++++I+RETY  I+ DR  NGPV++ SP GG DIE VAA  
Sbjct: 89  LATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASN 148
Query: 153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFL 212
           P L+    ID+ +GI +S AQ                                 ++A+ L
Sbjct: 149 PELIFKEQIDIIEGIKDSQAQ---------------------------------RMAENL 175
Query: 213 EFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQK 272
            F G L+ +AA +++KL+NLFL +DATQ+E+NP  ET E +V+  DAKINFDDNAEFRQK
Sbjct: 176 GFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQK 235
Query: 273 NIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFL 332
           +IF+ ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFL
Sbjct: 236 DIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFL 295
Query: 333 DVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVV 392
           D+GGGV E  + QAF+++++D  V+ ILVN+FGGIVN A IA G+  AC+  +L +PLVV
Sbjct: 296 DLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNXAIIANGITKACRELELKVPLVV 355
Query: 393 RLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           RLEGTNV E + IL  S LP+  A DL++AA
Sbjct: 356 RLEGTNVHEAQNILTNSGLPITSAVDLEDAA 386

>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 396

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
           A  +  AC+  +L +PLVVRLEGTNV E + IL  S LP+  A DL++AA
Sbjct: 337 ANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAA 386

>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 396

Iteration: 1
 Score =  394 bits (1011), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/391 (51%), Positives = 267/391 (68%), Gaps = 33/391 (8%)
Query: 33  ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92
           A  A    K LN KE V+KAQILAGGRG G F +G K GVH T + + +  + ++MIG+ 
Sbjct: 29  ANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYN 88
Query: 93  LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT 152
           L TKQTPK G+ VNKVMVA++++I+RETY  I+ DR  NGPV++ SP GG DIE VAA  
Sbjct: 89  LATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASN 148
Query: 153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFL 212
           P L+    ID+ +GI +S AQ                                 ++A+ L
Sbjct: 149 PELIFKEQIDIIEGIKDSQAQ---------------------------------RMAENL 175
Query: 213 EFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQK 272
            F G L+ +AA +++KL+NLFL +DATQ+E+NP  ET E +V+  DAKINFDDNAEFRQK
Sbjct: 176 GFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQK 235
Query: 273 NIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFL 332
           +IF+ ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFL
Sbjct: 236 DIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFL 295
Query: 333 DVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVV 392
           D+GGGV E  + QAF+++++D  V+ ILVN+FGGIVN A IA G+  A +  +L +PLVV
Sbjct: 296 DLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNXAIIANGITKAXRELELKVPLVV 355
Query: 393 RLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
           RLEGTNV E + IL  S LP+  A DL++AA
Sbjct: 356 RLEGTNVHEAQNILTNSGLPITSAVDLEDAA 386

>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 396

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
           A  +  A +  +L +PLVVRLEGTNV E + IL  S LP+  A DL++AA
Sbjct: 337 ANGITKAXRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAA 386

>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From Escherichia Coli At 2.5 Angstroms Resolution Length = 388

Iteration: 1
 Score =  268 bits (686), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 157/396 (39%), Positives = 219/396 (55%), Gaps = 40/396 (10%)
Query: 34  RTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL 93
           R A      +    +V+K Q+ AGGRG          GV   N+ +DI    E  +G +L
Sbjct: 29  REAEEAASKIGAGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRL 81
Query: 94  ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTP 153
           +T QT   G  VN+++V  + +I +E Y   V DR     V + S  GG +IE VA +TP
Sbjct: 82  VTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETP 141
Query: 154 HLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLE 213
           HL+  + +D   G      +++A  L  +G L       VQ+   +F+            
Sbjct: 142 HLIHKVALDPLTGPMPYQGRELAFKLGLEGKL-------VQQFTKIFMG----------- 183
Query: 214 FRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKN 273
                          L  +FL  D   +EINPLV T + ++I +D K+  D NA FRQ +
Sbjct: 184 ---------------LATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD 228
Query: 274 IFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLD 333
           +    + S+ DPRE  A+++ LNYV +DGNIGC+VNGAGLAM TMDI+KLHGGEPANFLD
Sbjct: 229 LREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLD 288
Query: 334 VGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVR 393
           VGGG  +E + +AF+II SD  VK +LVN+FGGIV C  IA G++ A     +++P+VVR
Sbjct: 289 VGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVR 348
Query: 394 LEGTNVQEGKRILDESKLPLIFASDLDEAASLVNAC 429
           LEG N + G + L +S L +I A  L +AA  V A 
Sbjct: 349 LEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAA 384

>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 385

Iteration: 1
 Score =  268 bits (686), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 157/396 (39%), Positives = 219/396 (55%), Gaps = 40/396 (10%)
Query: 34  RTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL 93
           R A      +    +V+K Q+ AGGRG          GV   N+ +DI    E  +G +L
Sbjct: 29  REAEEAASKIGAGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRL 81
Query: 94  ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTP 153
           +T QT   G  VN+++V  + +I +E Y   V DR     V + S  GG +IE VA +TP
Sbjct: 82  VTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETP 141
Query: 154 HLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLE 213
           HL+  + +D   G      +++A  L  +G L       VQ+   +F+            
Sbjct: 142 HLIHKVALDPLTGPMPYQGRELAFKLGLEGKL-------VQQFTKIFMG----------- 183
Query: 214 FRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKN 273
                          L  +FL  D   +EINPLV T + ++I +D K+  D NA FRQ +
Sbjct: 184 ---------------LATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD 228
Query: 274 IFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLD 333
           +    + S+ DPRE  A+++ LNYV +DGNIGC+VNGAGLAM TMDI+KLHGGEPANFLD
Sbjct: 229 LREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLD 288
Query: 334 VGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVR 393
           VGGG  +E + +AF+II SD  VK +LVN+FGGIV C  IA G++ A     +++P+VVR
Sbjct: 289 VGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVR 348
Query: 394 LEGTNVQEGKRILDESKLPLIFASDLDEAASLVNAC 429
           LEG N + G + L +S L +I A  L +AA  V A 
Sbjct: 349 LEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAA 384

>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E. Coli Scs Length = 388

Iteration: 1
 Score =  266 bits (680), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 156/396 (39%), Positives = 218/396 (55%), Gaps = 40/396 (10%)
Query: 34  RTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL 93
           R A      +    +V+K Q+ AGGRG          GV   N+ +DI    E  +G +L
Sbjct: 29  REAEEAASKIGAGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRL 81
Query: 94  ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTP 153
           +T QT   G  VN+++V  + +I +E Y   V DR     V + S  GG +IE VA +TP
Sbjct: 82  VTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETP 141
Query: 154 HLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLE 213
           HL+  + +D   G      +++A  L  +G L       VQ+   +F+            
Sbjct: 142 HLIHKVALDPLTGPMPYQGRELAFKLGLEGKL-------VQQFTKIFMG----------- 183
Query: 214 FRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKN 273
                          L  +FL  D   + INPLV T + ++I +D K+  D NA FRQ +
Sbjct: 184 ---------------LATIFLERDLALIAINPLVITKQGDLICLDGKLGADGNALFRQPD 228
Query: 274 IFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLD 333
           +    + S+ DPRE  A+++ LNYV +DGNIGC+VNGAGLAM TMDI+KLHGGEPANFLD
Sbjct: 229 LREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLD 288
Query: 334 VGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVR 393
           VGGG  +E + +AF+II SD  VK +LVN+FGGIV C  IA G++ A     +++P+VVR
Sbjct: 289 VGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVR 348
Query: 394 LEGTNVQEGKRILDESKLPLIFASDLDEAASLVNAC 429
           LEG N + G + L +S L +I A  L +AA  V A 
Sbjct: 349 LEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAA 384

>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 397

Iteration: 1
 Score =  212 bits (540), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 201/386 (52%), Gaps = 50/386 (12%)
Query: 46  KEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINV 105
           K  VIKAQ+  GGRG          GV   +  Q+     + ++G  +        G+ V
Sbjct: 40  KRVVIKAQVHVGGRGKA-------GGVKLADTPQEAYEKAQAILGMNI-------KGLTV 85
Query: 106 NKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQ 165
            KV+VA++V+I +E Y  ++ DR     V+++S  GG DIE VAA+ P  +    ID H+
Sbjct: 86  KKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHK 145
Query: 166 GITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATE 225
           G     A+++      +G+L                + LAQ +                 
Sbjct: 146 GFRPFEAREMVKRAGLEGNL----------------NKLAQVLV---------------- 173
Query: 226 VQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDP 285
              L+  +  VDA+  EINPLV T +  +++ DAKI  DDNA FR  ++    EV    P
Sbjct: 174 --ALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDLAELREVEAEHP 231
Query: 286 REVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQ 345
            EV+AS Y   YV +DGNIG + NGAGL M T+D++   GG+PANFLD+GGG   + +  
Sbjct: 232 LEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGAKADVVYN 291
Query: 346 AFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRI 405
           A +++  D +VK + +N+FGGI     +AKG++ A +   L+ P+V+R+ GT  +E K++
Sbjct: 292 ALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGTAEEEAKKL 351
Query: 406 LDESKLPLIFASDLDEAASLVNACKS 431
           L E K   ++ + + EAA +  A K 
Sbjct: 352 L-EGKPVYMYPTSI-EAAKVTVAMKG 375

>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 425

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 30/220 (13%)
Query: 217 DLKAKAATEVQKLWNLFLSVDATQLEINPLVET-DEREVISVDAKINFDDNAEFRQKNIF 275
           D K   A+ +  L+N +  +  T LEINPLV T D   V+ + AK+  D  A++  K  +
Sbjct: 176 DKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKV--DATADYICKVKW 233
Query: 276 SQNEVS-----ESDPRE-----VDA---SKYNLNYVGMDGNIGCLVNGAGLAMATMDIIK 322
              E       E+ P E     +DA   +   L  +   G I  +V G G ++   D I 
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293
Query: 323 LHGG--EPANFLDVGGGVNEESIIQAFRIISS----DSNVKCILVNVFGGIVNCATIA-- 374
             GG  E AN+ +  G  +E+      + I S    + +    ++ + G I N   +A  
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAAT 353
Query: 375 -KGLVNACKSFK-----LSIPLVVRLEGTNVQEGKRILDE 408
            KG+V A + ++       + + VR  G N QEG R++ E
Sbjct: 354 FKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGE 393

>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 217 DLKAKAATEVQKLWNLFLSVDATQLEINPLVET-DEREVISVDAKINFDDNAEFRQKNIF 275
           D K   A+ +  L+N +  +  T LEINPLV T D   V+ + AK+  D  A++  K  +
Sbjct: 176 DKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKV--DATADYICKVKW 233
Query: 276 SQNEVS-----ESDPREV--------DASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIK 322
              E       E+ P E           +   L  +   G I  +V G G ++   D I 
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293
Query: 323 LHGG--EPANFLDVGGGVNEESIIQAFRIISS----DSNVKCILVNVFGGIVNCATIA-- 374
             GG  E AN+ +  G  +E+      + I S    + +    ++ + G I N   +A  
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAAT 353
Query: 375 -KGLVNACKSFK-----LSIPLVVRLEGTNVQEGKRILDE 408
            KG+V A + ++       + + VR  G N QEG R++ E
Sbjct: 354 FKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGE 393

>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 425

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 30/220 (13%)
Query: 217 DLKAKAATEVQKLWNLFLSVDATQLEINPLVET-DEREVISVDAKINFDDNAEFRQKNIF 275
           D K   A+ +  L+N +  +  T LEINPLV T D   V+ + AK+  D  A++  K  +
Sbjct: 176 DKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKV--DATADYICKVKW 233
Query: 276 SQNEVS-----ESDPREV--------DASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIK 322
              E       E+ P E           +   L  +   G I   V G G ++   D I 
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTXVAGGGASVVYSDTIC 293
Query: 323 LHGG--EPANFLDVGGGVNEESIIQAFRIISS----DSNVKCILVNVFGGIVNCATIA-- 374
             GG  E AN+ +  G  +E+      + I S    + +    ++ + G I N   +A  
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLXTREKHPDGKILIIGGSIANFTNVAAT 353
Query: 375 -KGLVNACKSFK-----LSIPLVVRLEGTNVQEGKRILDE 408
            KG+V A + ++       + + VR  G N QEG R+  E
Sbjct: 354 FKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVXGE 393

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	525
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	0.0
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	1e-16
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	0.0
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	3e-16
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	1e-154
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	4e-13
3mwd_A	425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	1e-125
3mwd_A	425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	3e-07
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	3e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395

 Score =  545 bits (1407), Expect = 0.0
 Identities = 202/391 (51%), Positives = 268/391 (68%), Gaps = 33/391 (8%)

Query: 36  ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95
           A    K LN KE V+KAQILAGGRG G F +G K GVH T + + +  + ++MIG+ L T
Sbjct: 31  ALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLAT 90

Query: 96  KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHL 155
           KQTPK G+ VNKVMVA++++I+RETY  I+ DR  NGPV++ SP GG DIE VAA  P L
Sbjct: 91  KQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPEL 150

Query: 156 VKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFR 215
           +    ID+ +GI +            Q                      AQ++A+ L F 
Sbjct: 151 IFKEQIDIIEGIKD-----------SQ----------------------AQRMAENLGFL 177

Query: 216 GDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIF 275
           G L+ +AA +++KL+NLFL +DATQ+E+NP  ET E +V+  DAKINFDDNAEFRQK+IF
Sbjct: 178 GPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF 237

Query: 276 SQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVG 335
           + ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFLD+G
Sbjct: 238 AMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLG 297

Query: 336 GGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLE 395
           GGV E  + QAF+++++D  V+ ILVN+FGGIVNCA IA G+  AC+  +L +PLVVRLE
Sbjct: 298 GGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLE 357

Query: 396 GTNVQEGKRILDESKLPLIFASDLDEAASLV 426
           GTNV E + IL  S LP+  A DL++AA   
Sbjct: 358 GTNVHEAQNILTNSGLPITSAVDLEDAAKKA 388

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395

 Score = 81.0 bits (201), Expect = 1e-16
 Identities = 26/50 (52%), Positives = 34/50 (68%)

Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
           A  +  AC+  +L +PLVVRLEGTNV E + IL  S LP+  A DL++AA
Sbjct: 336 ANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAA 385

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388

 Score =  514 bits (1326), Expect = 0.0
 Identities = 153/391 (39%), Positives = 213/391 (54%), Gaps = 40/391 (10%)

Query: 36  ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95
           A      +    +V+K Q+ AGGRG          GV   N+ +DI    E  +G +L+T
Sbjct: 31  AEEAASKIGAGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVT 83

Query: 96  KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHL 155
            QT   G  VN+++V  + +I +E Y   V DR     V + S  GG +IE VA +TPHL
Sbjct: 84  YQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHL 143

Query: 156 VKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFR 215
           +  + +D   G              +Q                       +++A  L   
Sbjct: 144 IHKVALDPLTGPMP-----------YQ----------------------GRELAFKLGLE 170

Query: 216 GDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIF 275
           G L  +       L  +FL  D   +EINPLV T + ++I +D K+  D NA FRQ ++ 
Sbjct: 171 GKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLR 230

Query: 276 SQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVG 335
              + S+ DPRE  A+++ LNYV +DGNIGC+VNGAGLAM TMDI+KLHGGEPANFLDVG
Sbjct: 231 EMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVG 290

Query: 336 GGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLE 395
           GG  +E + +AF+II SD  VK +LVN+FGGIV C  IA G++ A     +++P+VVRLE
Sbjct: 291 GGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLE 350

Query: 396 GTNVQEGKRILDESKLPLIFASDLDEAASLV 426
           G N + G + L +S L +I A  L +AA  V
Sbjct: 351 GNNAELGAKKLADSGLNIIAAKGLTDAAQQV 381

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388

 Score = 79.8 bits (198), Expect = 3e-16
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
           A  ++ A     +++P+VVRLEG N + G + L +S L +I A  L +AA
Sbjct: 329 ADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAA 378

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397

 Score =  444 bits (1145), Expect = e-154
 Identities = 129/396 (32%), Positives = 198/396 (50%), Gaps = 54/396 (13%)

Query: 31  EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG 90
           E+A+              VIKAQ+  GGRG      G   GV   +  Q+     + ++G
Sbjct: 29  EEAKRIAEEFGK----RVVIKAQVHVGGRGKA----G---GVKLADTPQEAYEKAQAILG 77

Query: 91  HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAA 150
             +        G+ V KV+VA++V+I +E Y  ++ DR     V+++S  GG DIE VAA
Sbjct: 78  MNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAA 130

Query: 151 KTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIAD 210
           + P  +    ID H+G     A+++      +G+L                         
Sbjct: 131 ERPEAIHKFWIDPHKGFRPFEAREMVKRAGLEGNLN------------------------ 166

Query: 211 FLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFR 270
                     K A  +  L+  +  VDA+  EINPLV T +  +++ DAKI  DDNA FR
Sbjct: 167 ----------KLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFR 216

Query: 271 QKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPAN 330
             ++    EV    P EV+AS Y   YV +DGNIG + NGAGL M T+D++   GG+PAN
Sbjct: 217 HPDLAELREVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPAN 276

Query: 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPL 390
           FLD+GGG   + +  A +++  D +VK + +N+FGGI     +AKG++ A +   L+ P+
Sbjct: 277 FLDIGGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPV 336

Query: 391 VVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLV 426
           V+R+ GT  +E K++L+    P+       EAA + 
Sbjct: 337 VMRVAGTAEEEAKKLLEGK--PVYMYPTSIEAAKVT 370

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397

 Score = 69.9 bits (172), Expect = 4e-13
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
           A  ++ A +   L+ P+V+R+ GT  +E K++L+    P+       EAA
Sbjct: 320 AKGVIRALEEGLLTKPVVMRVAGTAEEEAKKLLEGK--PVYMYPTSIEAA 367

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425

 Score =  372 bits (958), Expect = e-125
 Identities = 83/413 (20%), Positives = 136/413 (32%), Gaps = 82/413 (19%)

Query: 31  EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSG-VHFTNNVQDIPPILEKMI 89
            D          L  +  V+K   L   RG        K G V     +  +   L+  +
Sbjct: 38  TDWARLLQDHPWLLSQNLVVKPDQLIKRRG--------KLGLVGVNLTLDGVKSWLKPRL 89

Query: 90  GHKLITKQTPKTGINVNKVMVAKSV--NITRETYFCIVQDRLHNGPVVIISPSGGTDIEN 147
           G +       K    +   ++   V  +   E Y CI   R   G  V+    GG D+ +
Sbjct: 90  GQEA---TVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATR--EGDYVLFHHEGGVDVGD 144

Query: 148 VAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQK 207
           V AK       + +D      +     +                                
Sbjct: 145 VDAKAQK--LLVGVDEKLNPEDIKKHLLVHAP---------------------------- 174

Query: 208 IADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNA 267
                    D K   A+ +  L+N +  +  T LEINPLV T +  V  +D     D  A
Sbjct: 175 --------EDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKD-GVYVLDLAAKVDATA 225

Query: 268 EFRQKNIF-------------SQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLA 314
           ++  K  +                E   +D      +   L  +   G I  +V G G +
Sbjct: 226 DYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGAS 285

Query: 315 MATMDIIKLHGG--EPANFLDVGGGVNEESIIQAFRIISS----DSNVKCILVNVFGGIV 368
           +   D I   GG  E AN+ +  G  +E+      + I S    + +    ++ + G I 
Sbjct: 286 VVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIA 345

Query: 369 NCATIA---KGLVNACKSFK-----LSIPLVVRLEGTNVQEGKRILDESKLPL 413
           N   +A   KG+V A + ++       + + VR  G N QEG R++ E     
Sbjct: 346 NFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTT 398

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 473 LVNACKSFK-----LSIPLVVRLEGTNVQEGKRILDESKLPL 509
           +V A + ++       + + VR  G N QEG R++ E     
Sbjct: 357 IVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTT 398

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829

 Score =  142 bits (360), Expect = 3e-36
 Identities = 88/457 (19%), Positives = 152/457 (33%), Gaps = 91/457 (19%)

Query: 5   FNQQIANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHF 64
             + I   S +         T              L   N    V+K   L   RG    
Sbjct: 15  LYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNL---VVKPDQLIKRRG---- 67

Query: 65  DNGFKSG-VHFTNNVQDIPPILEKMIGHKL-ITKQTPKTGINVNKVMVAKSV--NITRET 120
               K G V     +  +   L+  +G +  + K T      +   ++   V  +   E 
Sbjct: 68  ----KLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGF----LKNFLIEPFVPHSQAEEF 119

Query: 121 YFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLE 180
           Y CI   R   G  V+    GG D+ +V AK     + + + V + +             
Sbjct: 120 YVCIYATR--EGDYVLFHHEGGVDVGDVDAK----AQKLLVGVDEKLNPE---------- 163

Query: 181 FQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQ 240
              D+K        +                     D K   A+ +  L+N +  +  T 
Sbjct: 164 ---DIKKHLLVHAPE---------------------DKKEILASFISGLFNFYEDLYFTY 199

Query: 241 LEINPLVETDEREVISVDAKINFDDNAEFRQKN-------------IFSQNEVSESDPRE 287
           LEINPLV T +  V  +D     D  A++  K                   E   +D   
Sbjct: 200 LEINPLVVTKD-GVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDA 258

Query: 288 VDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGG--EPANFLDVGGGVNEESIIQ 345
              +   L  +   G I  +V G G ++   D I   GG  E AN+ +  G  +E+    
Sbjct: 259 KSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYD 318

Query: 346 ----AFRIISSDSNVKCILVNVFGGIVNCATIA---KGLVNACKSFKLS-----IPLVVR 393
                  +++ + +    ++ + G I N   +A   KG+V A + ++       + + VR
Sbjct: 319 YAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVR 378

Query: 394 LEGTNVQEGKRIL----DESKLPLIFASDLDEAASLV 426
             G N QEG R++      + +P+          ++V
Sbjct: 379 RGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIV 415

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 63/472 (13%), Positives = 130/472 (27%), Gaps = 140/472 (29%)

Query: 27  KVCLEDARTATNILKD-------------LNFKEYVIKAQILAGGRGLGH-FDNGFKSGV 72
           K  +     A ++                LN K       +L   + L +  D  + S  
Sbjct: 163 KTWV-----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 73  HFTNNVQDIPPILEKMIGHKLITKQTPKTGI---NVNKVMVAKSVNI-------TRETYF 122
             ++N++     ++  +   L +K      +   NV       + N+       TR    
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ- 276

Query: 123 CIVQDRLHNGPVVIIS----PSGGTDIENVA--AKT--------PHLVKTI-PIDVHQGI 167
             V D L       IS        T  E  +   K         P  V T  P      I
Sbjct: 277 --VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSII 333

Query: 168 TESLAQDIA---------------------DFLE-------------FQGDLKAKAATEV 193
            ES+   +A                     + LE             F           +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-L 392

Query: 194 QKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDERE 253
             +W   + S    + + L     ++ +       + +++L +         L     R 
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRS 448

Query: 254 VISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGL 313
           ++             +     F  +++    P  +D  +Y  +++G              
Sbjct: 449 IV-----------DHYNIPKTFDSDDLI---PPYLD--QYFYSHIGHH------------ 480

Query: 314 AMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCI--LVNVFGG----- 366
            +  ++  +        FLD          ++  +I    +       ++N         
Sbjct: 481 -LKNIEHPERMTLFRMVFLDF-------RFLEQ-KIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 367 --IVNCATIAKGLVNACKSFKLSI-PLVVRLEGTN-VQ-----EGKRILDES 409
             I +     + LVNA   F   I   ++  + T+ ++     E + I +E+
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	525
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	100.0
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	100.0
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	100.0
3mwd_A	425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	100.0
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	100.0
1wr2_A	238	Hypothetical protein PH1789; structural genomics,	100.0
2csu_A	457	457AA long hypothetical protein; structural genomi	99.87
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	99.72
2cqy_A	108	Propionyl-COA carboxylase alpha chain, mitochondri	98.84
4eg0_A	317	D-alanine--D-alanine ligase; structural genomics,	98.74
3mjf_A	431	Phosphoribosylamine--glycine ligase; structural ge	98.67
3lp8_A	442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	98.65
3e5n_A	386	D-alanine-D-alanine ligase A; bacterial blight; 2.	98.64
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	98.6
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	98.56
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	98.5
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	98.5
1vkz_A	412	Phosphoribosylamine--glycine ligase; TM1250, struc	98.5
3glk_A	540	Acetyl-COA carboxylase 2; ATP binding, alternative	98.49
3ouz_A	446	Biotin carboxylase; structural genomics, center fo	98.48
3jrx_A	587	Acetyl-COA carboxylase 2; BC domain, soraphen A, a	98.46
2xcl_A	422	Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-	98.42
3ln6_A	750	Glutathione biosynthesis bifunctional protein GSH;	98.42
2csu_A	457	457AA long hypothetical protein; structural genomi	98.41
3i12_A	364	D-alanine-D-alanine ligase A; D-alanyl-alanine syn	98.41
2yrx_A	451	Phosphoribosylglycinamide synthetase; glycinamide	98.4
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	98.39
2yw2_A	424	Phosphoribosylamine--glycine ligase; glycinamide r	98.37
1ulz_A	451	Pyruvate carboxylase N-terminal domain; biotin car	98.35
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	98.35
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	98.34
2dzd_A	461	Pyruvate carboxylase; biotin carboxylase, ligase;	98.32
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	98.32
2z04_A	365	Phosphoribosylaminoimidazole carboxylase ATPase su	98.31
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	98.3
2vpq_A	451	Acetyl-COA carboxylase; bacteria, ATP-grAsp domain	98.3
2ip4_A	417	PURD, phosphoribosylamine--glycine ligase; GAR syn	98.3
1w96_A	554	ACC, acetyl-coenzyme A carboxylase; ligase, obesit	98.29
3vmm_A	474	Alanine-anticapsin ligase BACD; ATP-grAsp domain,	98.23
2w70_A	449	Biotin carboxylase; ligase, ATP-binding, fatty aci	98.23
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.22
3se7_A	346	VANA; alpha-beta structure, D-alanine-D-lactate li	98.21
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	98.19
1iow_A	306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	98.19
3eth_A	355	Phosphoribosylaminoimidazole carboxylase ATPase su	98.17
1ehi_A	377	LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g	98.15
4dim_A	403	Phosphoribosylglycinamide synthetase; structural g	98.12
3r5x_A	307	D-alanine--D-alanine ligase; alpha-beta structure,	98.08
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	98.05
3k3p_A	383	D-alanine--D-alanine ligase; D-alanyl-alanine synt	98.04
4fu0_A	357	D-alanine--D-alanine ligase 7; vancomycin resistan	98.04
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.01
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	97.98
3ln7_A	757	Glutathione biosynthesis bifunctional protein GSH;	97.97
3tqt_A	372	D-alanine--D-alanine ligase; cell envelope; 1.88A	97.96
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	97.94
3lwb_A	373	D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan	97.92
2i87_A	364	D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco	97.92
1uc8_A	280	LYSX, lysine biosynthesis enzyme; alpha-aminoadipa	97.83
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.81
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	97.79
1e4e_A	343	Vancomycin/teicoplanin A-type resistance protein;	97.76
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	97.76
2pvp_A	367	D-alanine-D-alanine ligase; 2.40A {Helicobacter py	97.75
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.74
3vot_A	425	L-amino acid ligase, BL00235; ATP-grAsp motif, ATP	97.67
2pn1_A	331	Carbamoylphosphate synthase large subunit; ZP_0053	97.65
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	97.65
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.62
2fb9_A	322	D-alanine:D-alanine ligase; 1.90A {Thermus caldoph	97.6
2r7k_A	361	5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib	97.58
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.48
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.43
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.41
3mjf_A	431	Phosphoribosylamine--glycine ligase; structural ge	97.24
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	97.12
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	97.11
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	97.02
2r85_A	334	PURP protein PF1517; ATP-grAsp superfamily, unknow	97.01
3lp8_A	442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	96.93
1wr2_A	238	Hypothetical protein PH1789; structural genomics,	96.85
3ouz_A	446	Biotin carboxylase; structural genomics, center fo	96.64
1z2n_X	324	Inositol 1,3,4-trisphosphate 5/6-kinase; inositol	96.63
3glk_A	540	Acetyl-COA carboxylase 2; ATP binding, alternative	96.53
3jrx_A	587	Acetyl-COA carboxylase 2; BC domain, soraphen A, a	96.44
1gsa_A	316	Glutathione synthetase; ligase; HET: ADP GSH; 2.00	96.42
3vmm_A	474	Alanine-anticapsin ligase BACD; ATP-grAsp domain,	96.23
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	96.2
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	96.09
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	96.08
1ulz_A	451	Pyruvate carboxylase N-terminal domain; biotin car	95.98
1i7n_A	309	Synapsin II; synapse, phosphorylation, neuropeptid	95.88
2vpq_A	451	Acetyl-COA carboxylase; bacteria, ATP-grAsp domain	95.68
2q7d_A	346	Inositol-tetrakisphosphate 1-kinase; inositol kina	95.52
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	95.13
2p0a_A	344	Synapsin-3, synapsin III; neurotransmitter release	95.11
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	95.03
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	94.97
3i12_A	364	D-alanine-D-alanine ligase A; D-alanyl-alanine syn	94.92
2yrx_A	451	Phosphoribosylglycinamide synthetase; glycinamide	94.8
2ip4_A	417	PURD, phosphoribosylamine--glycine ligase; GAR syn	94.77
2pbz_A	320	Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt	94.71
3e5n_A	386	D-alanine-D-alanine ligase A; bacterial blight; 2.	94.59
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	94.54
4eg0_A	317	D-alanine--D-alanine ligase; structural genomics,	94.45
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	94.44
2dzd_A	461	Pyruvate carboxylase; biotin carboxylase, ligase;	94.31
3mwd_A	425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	94.18
2cqy_A	108	Propionyl-COA carboxylase alpha chain, mitochondri	94.15
4fu0_A	357	D-alanine--D-alanine ligase 7; vancomycin resistan	94.02
2w70_A	449	Biotin carboxylase; ligase, ATP-binding, fatty aci	93.97
2xcl_A	422	Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-	93.86
3k3p_A	383	D-alanine--D-alanine ligase; D-alanyl-alanine synt	93.84
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	93.52
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	93.41
1uc8_A	280	LYSX, lysine biosynthesis enzyme; alpha-aminoadipa	93.36
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	93.2
2yw2_A	424	Phosphoribosylamine--glycine ligase; glycinamide r	93.2
3df7_A	305	Putative ATP-grAsp superfamily protein; putative p	93.06
3eth_A	355	Phosphoribosylaminoimidazole carboxylase ATPase su	92.4
4dim_A	403	Phosphoribosylglycinamide synthetase; structural g	92.2
1ehi_A	377	LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g	92.07
2pvp_A	367	D-alanine-D-alanine ligase; 2.40A {Helicobacter py	91.75
1w96_A	554	ACC, acetyl-coenzyme A carboxylase; ligase, obesit	91.7
3lwb_A	373	D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan	90.91
3vot_A	425	L-amino acid ligase, BL00235; ATP-grAsp motif, ATP	90.84
1vkz_A	412	Phosphoribosylamine--glycine ligase; TM1250, struc	90.76
3ln7_A	757	Glutathione biosynthesis bifunctional protein GSH;	90.68
3se7_A	346	VANA; alpha-beta structure, D-alanine-D-lactate li	90.55
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	90.3
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	90.22
3tqt_A	372	D-alanine--D-alanine ligase; cell envelope; 1.88A	90.06
3ln6_A	750	Glutathione biosynthesis bifunctional protein GSH;	89.92
2pn1_A	331	Carbamoylphosphate synthase large subunit; ZP_0053	89.86
3r5x_A	307	D-alanine--D-alanine ligase; alpha-beta structure,	89.66
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	89.65
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	88.34
2i87_A	364	D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco	88.14
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	87.98
2z04_A	365	Phosphoribosylaminoimidazole carboxylase ATPase su	86.35
1e4e_A	343	Vancomycin/teicoplanin A-type resistance protein;	85.51
1iow_A	306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	85.47
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	82.27
2fb9_A	322	D-alanine:D-alanine ligase; 1.90A {Thermus caldoph	82.21
1z2n_X	324	Inositol 1,3,4-trisphosphate 5/6-kinase; inositol	82.05
1ydh_A	216	AT5G11950; structural genomics, protein structure	80.37

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*

Probab=100.00  E-value=6.5e-76  Score=618.03  Aligned_cols=387  Identities=53%  Similarity=0.852  Sum_probs=365.4

Q ss_pred             ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785          11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK   87 (525)
Q Consensus        11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~   87 (525)
                      +.||++|+   +||||+|++.++++++|+.++++++||+|||||+|+.+|||||++|||+..|||+++.|++|+++++++
T Consensus         3 l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~   82 (395)
T 2fp4_B            3 LQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQ   82 (395)
T ss_dssp             CCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHH
Confidence            57899999   899999999999999999999999996479999999999999999999844999999999999999999


Q ss_pred             HhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCC
Q psy7785          88 MIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGI  167 (525)
Q Consensus        88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l  167 (525)
                      |+++.+.++++++.|..+++|+||+|+++++|+|+++.+|+.|++|++++|..||++||.+..++||++.+++++|..++
T Consensus        83 ~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~~l  162 (395)
T 2fp4_B           83 MIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGI  162 (395)
T ss_dssp             TTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTTCC
T ss_pred             HhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCCCC
Confidence            99886656666667777889999999999999999999999996699999999999999998889999999999999999


Q ss_pred             CHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeecee
Q psy7785         168 TESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLV  247 (525)
Q Consensus       168 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl~  247 (525)
                      ++.+|++|+.+||+                                 ++.+.+++.+++.+||++|.+.+++++|||||+
T Consensus       163 ~~~~a~~l~~~lg~---------------------------------~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~  209 (395)
T 2fp4_B          163 KDSQAQRMAENLGF---------------------------------LGPLQNQAADQIKKLYNLFLKIDATQVEVNPFG  209 (395)
T ss_dssp             CHHHHHHHHHHTTC---------------------------------CHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CHHHHHHHHHHhCc---------------------------------CHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEE
Confidence            99999999998875                                 556899999999999999999999999999999


Q ss_pred             EecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCCC
Q psy7785         248 ETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGE  327 (525)
Q Consensus       248 v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~  327 (525)
                      ++++|+++|+|+++.+|++|.|||+++++.+|.+++++.|..+.+++|+|++++||||+|+||||++|+++|.+..+|++
T Consensus       210 ~~~~g~~~alDaki~~ddnA~~r~~~~~~~~d~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~Gg~  289 (395)
T 2fp4_B          210 ETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGK  289 (395)
T ss_dssp             ECTTSCEEECSEEEEECGGGGGGCHHHHTTCCCTTSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             EcCCCCEEEEEeEEEecccccccCcchhhhcCCCccChhhhhHHHcCCceeccCCeEEEEecCchHHHHHHHHHHHcCCC
Confidence            99987899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHh
Q psy7785         328 PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILD  407 (525)
Q Consensus       328 ~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~  407 (525)
                      |+||+|++|+++.+++.++++++++||+||++|||+++|+++|+.+|++|+++.++.+.+|||++++.|++.++++++|+
T Consensus       290 paNflDvgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl~G~n~~~g~~~L~  369 (395)
T 2fp4_B          290 PANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILT  369 (395)
T ss_dssp             BCEEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHH
T ss_pred             cCCcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988667899999999998889999999


Q ss_pred             hCCCCccccCCHHHHHHHHHHhh
Q psy7785         408 ESKLPLIFASDLDEAASLVNACK  430 (525)
Q Consensus       408 ~~Gvpvf~~~s~~~Av~Al~~l~  430 (525)
                      +.|+|+|.++++++|++++.+++
T Consensus       370 ~~gl~~~~~~~~~~Aa~~~v~~~  392 (395)
T 2fp4_B          370 NSGLPITSAVDLEDAAKKAVASV  392 (395)
T ss_dssp             HTCSCCEECSSHHHHHHHHHHTT
T ss_pred             HCCCceEeCCCHHHHHHHHHHHh
Confidence            99999999999999999998765

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}

Probab=100.00  E-value=2.9e-74  Score=606.24  Aligned_cols=370  Identities=35%  Similarity=0.573  Sum_probs=348.1

Q ss_pred             ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785          11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK   87 (525)
Q Consensus        11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~   87 (525)
                      +.||++|+   +||||||++.+++|++|+.++++++|| |||||+++..+||||       .|||+++.|++|+++++++
T Consensus         3 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~-PvVvKa~~~~ggkg~-------~GGV~l~~s~ee~~~a~~~   74 (397)
T 3ufx_B            3 LHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFGK-RVVIKAQVHVGGRGK-------AGGVKLADTPQEAYEKAQA   74 (397)
T ss_dssp             CCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTS-CEEEEECCSSSCTTT-------TTCEEEESSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEEccccCCCCc-------cceEEEeCCHHHHHHHHHH
Confidence            67899999   899999999999999999999999997 999999997788777       8999999999999999999


Q ss_pred             HhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCC
Q psy7785          88 MIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGI  167 (525)
Q Consensus        88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l  167 (525)
                      |+++.+       .|..+++|+||+|+++++|+|+|+++||.|++|+|+||..||++||.+++++||++.+++++|..|+
T Consensus        75 ~~~~~~-------~g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~~~~l  147 (397)
T 3ufx_B           75 ILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGF  147 (397)
T ss_dssp             HTTCEE-------TTEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBTTTBC
T ss_pred             hhhhhc-------cCCccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCCCCCC
Confidence            987644       3556789999999999999999999999996699999988999999999999999999999998899


Q ss_pred             CHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeecee
Q psy7785         168 TESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLV  247 (525)
Q Consensus       168 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl~  247 (525)
                      ++.+|++|+.+||+                                 ++. ++++.+++.+||++|.+++.+++|||||+
T Consensus       148 ~~~~a~~~~~~lG~---------------------------------~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~  193 (397)
T 3ufx_B          148 RPFEAREMVKRAGL---------------------------------EGN-LNKLAQVLVALYRAYEGVDASIAEINPLV  193 (397)
T ss_dssp             CHHHHHHHHHHHTC---------------------------------CSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CHHHHHHHHHHcCC---------------------------------chH-HHHHHHHHHHHHHHHHcCCccEEEeeceE
Confidence            99999999998764                                 233 89999999999999999998999999999


Q ss_pred             EecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCCC
Q psy7785         248 ETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGE  327 (525)
Q Consensus       248 v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~  327 (525)
                      ++++|+++|+||++.+||++.|||+++..++|.+++++.|.++.+++++|+++++||||||||||++++++|++..+|++
T Consensus       194 ~~~~g~~~alDaki~~ddnA~~r~~~~~~~~~~~~~~~~e~~a~~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~G~~  273 (397)
T 3ufx_B          194 VTTDGGIVAADAKIVLDDNALFRHPDLAELREVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGK  273 (397)
T ss_dssp             EETTSCEEESSCEEEECGGGGGGCHHHHTTHHHHCSSHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred             ECCCCCEEEEEeEEEecCcchhcchhhhhhcCcccCCHhHHHHHHcCCCcccCCCcEEEEecCccHHHHHHHHHHHcCCC
Confidence            99988899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHh
Q psy7785         328 PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILD  407 (525)
Q Consensus       328 ~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~  407 (525)
                      ++||+|++|+++++.|.++++++++||++|+++||+++++++|+.+|++|+++.++.+.+|||+++|.|++.++++++|+
T Consensus       274 ~aN~lD~gG~a~~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~~~vA~~i~~a~~~~~~~kPvvv~~~G~~~~~~~~~l~  353 (397)
T 3ufx_B          274 PANFLDIGGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGTAEEEAKKLLE  353 (397)
T ss_dssp             BSEEEECCSCCCHHHHHHHHHHHHTCTTCCEEEEEEEEEEEESHHHHHHHHHHHTTTCCCSCEEEEEEEECHHHHHHHTT
T ss_pred             cCCcEecCCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHhhCCCCcEEEEccCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999998899999999999999887555899999999988888999999


Q ss_pred             hCCCCccccCCHHHHHHHHHHhhc
Q psy7785         408 ESKLPLIFASDLDEAASLVNACKS  431 (525)
Q Consensus       408 ~~Gvpvf~~~s~~~Av~Al~~l~~  431 (525)
                      +.|||+|  ++|++|++++.++++
T Consensus       354 ~~gip~~--~~~e~Aa~~~~~l~~  375 (397)
T 3ufx_B          354 GKPVYMY--PTSIEAAKVTVAMKG  375 (397)
T ss_dssp             TSSEEEC--SSHHHHHHHHHHSCC
T ss_pred             hCCCccc--CCHHHHHHHHHHHHH
Confidence            9999999  999999999998765

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*

Probab=100.00  E-value=9.3e-73  Score=593.51  Aligned_cols=379  Identities=41%  Similarity=0.661  Sum_probs=357.9

Q ss_pred             ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCc-EEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHH
Q psy7785          11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKE-YVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILE   86 (525)
Q Consensus        11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~P-vVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~   86 (525)
                      +.||++|+   +||||+|++.++++++|+.++++++|| | ||||++...+||||       .|||+++.|+++++++++
T Consensus         3 l~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~-P~vVvK~~~~~ggrg~-------~gGV~l~~s~eel~~a~~   74 (388)
T 2nu8_B            3 LHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGA-GPWVVKCQVHAGGRGK-------AGGVKVVNSKEDIRAFAE   74 (388)
T ss_dssp             CCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCS-SCEEEEECCSSSCTTT-------TTCEEEECSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCcCCCCeeEECCHHHHHHHHHHhCC-CeEEEEEecCCCCCCc-------cCCEEEECCHHHHHHHHH
Confidence            57899999   899999999999999999999999997 9 99999998888887       799999999999999999


Q ss_pred             HHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCC
Q psy7785          87 KMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQG  166 (525)
Q Consensus        87 ~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~  166 (525)
                      +++++...++++++.|..+++|+||+|+++++|+|+++.+|+.|++|+++||..||++||.+++++||++.+++++|..+
T Consensus        75 ~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~g  154 (388)
T 2nu8_B           75 NWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTG  154 (388)
T ss_dssp             HHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTTB
T ss_pred             HHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCCC
Confidence            99987665666666776688999999999999999999999999449999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeece
Q psy7785         167 ITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPL  246 (525)
Q Consensus       167 l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl  246 (525)
                      +++.++++|+.+||+                                 ++.+++++++++.+||++|.+.+++++|||||
T Consensus       155 l~~~~a~~~~~~lG~---------------------------------~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl  201 (388)
T 2nu8_B          155 PMPYQGRELAFKLGL---------------------------------EGKLVQQFTKIFMGLATIFLERDLALIEINPL  201 (388)
T ss_dssp             CCHHHHHHHHHHTTC---------------------------------CTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCHHHHHHHHHHcCC---------------------------------CHHHHHHHHHHHHHHHHHHHhCCEEEEEecce
Confidence            999999999998765                                 55699999999999999999999999999999


Q ss_pred             eEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCC
Q psy7785         247 VETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGG  326 (525)
Q Consensus       247 ~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl  326 (525)
                      +++++|+++|+|+++.+|++|.|||++|..+++.++++++|..+..++++|++++||||+|+||||++|+++|.+..+|+
T Consensus       202 ~~~~~g~~~alDaki~~dd~a~~r~~~~~~~~~~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~Gg  281 (388)
T 2nu8_B          202 VITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGG  281 (388)
T ss_dssp             EEETTSCEEESCCEEEECGGGGGGCHHHHHHCCGGGSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             EEcCCCCEEEEeeEEEeCCchhccCcchhhhcCccccChhHHHHHHhcCCccCCCCEEEEEeCCCchhhhhhHHHHHcCC
Confidence            99999889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHH
Q psy7785         327 EPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRIL  406 (525)
Q Consensus       327 ~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L  406 (525)
                      +|+||+|++|+++.+++.++++++++||+||++|||+++|+++|+.+|++|+++.++.+.+||||+++.|++.++++++|
T Consensus       282 ~~aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~~vA~gii~a~~~~~~~~pivvrl~G~n~~~g~~~l  361 (388)
T 2nu8_B          282 EPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKL  361 (388)
T ss_dssp             CBCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHH
T ss_pred             CcCceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEecCCcCCchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998866789999999999999999999


Q ss_pred             hhCCCCccccCCHHHHHHHHHHhh
Q psy7785         407 DESKLPLIFASDLDEAASLVNACK  430 (525)
Q Consensus       407 ~~~Gvpvf~~~s~~~Av~Al~~l~  430 (525)
                      ++.|+|+|.++++++|++++.+++
T Consensus       362 ~~~g~~~~~~~~~~~aa~~~v~~~  385 (388)
T 2nu8_B          362 ADSGLNIIAAKGLTDAAQQVVAAV  385 (388)
T ss_dssp             HTTCSSEEECSSHHHHHHHHHHHT
T ss_pred             HHCCCceecCCCHHHHHHHHHHHh
Confidence            999999999999999999988765

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*

Probab=100.00  E-value=6.9e-65  Score=536.29  Aligned_cols=370  Identities=22%  Similarity=0.283  Sum_probs=316.5

Q ss_pred             hccccHHhhhh---hCCC---C---CCCccccCCH---HHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe
Q psy7785           8 QIANFSYLVKP---VSTV---H---STDKVCLEDA---RTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT   75 (525)
Q Consensus         8 ~~~~~e~~~k~---~~GI---p---vp~~~~~~~~---eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~   75 (525)
                      +....||++|+   +||+   |   .+++.+++++   +||.++++++|.+|||||+|++++||||       +|||+++
T Consensus         3 ~k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk-------~GGV~l~   75 (425)
T 3mwd_A            3 AKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGK-------LGLVGVN   75 (425)
T ss_dssp             EEEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTT-------TTCCEEE
T ss_pred             chhHhHHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCc-------CCeEEEE
Confidence            35789999999   7888   4   3347677655   9999999999833999999999999988       8999999


Q ss_pred             CCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCC--ceeEEEEEEEcCCCCccEEEecCCCCcccccccccCC
Q psy7785          76 NNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNI--TRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTP  153 (525)
Q Consensus        76 ~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~--~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~  153 (525)
                      .|++|+++++++|+++...   ++..+..+++|+||+|+++  ++|+|+|+++||.  ||+|+||..||++||.++++++
T Consensus        76 ~s~eev~~aa~~ml~~~~~---~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~--gpvI~~s~~GGv~IE~vad~~~  150 (425)
T 3mwd_A           76 LTLDGVKSWLKPRLGQEAT---VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAKAQ  150 (425)
T ss_dssp             ECHHHHHHHHTTTTTCEEE---ETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCSHHHHSE
T ss_pred             CCHHHHHHHHHHHHhhhhh---ccCCCceEEEEEEEecccCCCCceEEEEEEecCC--CCEEEEECCCCccHhHhhcccc
Confidence            9999999999999987652   2223445899999999975  5999999999998  8999999899999999997543


Q ss_pred             CeEEEEecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q psy7785         154 HLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLF  233 (525)
Q Consensus       154 ~~~~~~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~  233 (525)
                          +++++|..+++..+++   ..                 ++.+              +|+.+++++++++.+||++|
T Consensus       151 ----~~~i~~~~~l~~~~~~---~~-----------------ll~g--------------~~~~d~~~la~~l~~L~~lf  192 (425)
T 3mwd_A          151 ----KLLVGVDEKLNPEDIK---KH-----------------LLVH--------------APEDKKEILASFISGLFNFY  192 (425)
T ss_dssp             ----EEEEETTCCCCHHHHH---HT-----------------TTTT--------------SCTTTHHHHHHHHHHHHHHH
T ss_pred             ----eEecCCccccCHHHHH---HH-----------------HHcC--------------CcHHHHHHHHHHHHHHHHHH
Confidence                5678877777766553   11                 2222              25679999999999999999


Q ss_pred             hcCCCceeeeeceeEecCCcEEEeeeEEEecCCchhcccccccc-CCC----CCCChHhhhhh--------ccCCceecc
Q psy7785         234 LSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQ-NEV----SESDPREVDAS--------KYNLNYVGM  300 (525)
Q Consensus       234 ~~~~~~~leiNPl~v~~~g~~~alDa~i~ld~~a~frq~~i~~~-~~~----~~~~~~E~~a~--------~~~l~~~~~  300 (525)
                      .+++++++|||||+++++| ++|+|||+.+||||.|||+..+.. ++.    ++.+++|..+.        +++|+|+++
T Consensus       193 ~d~d~~~lEINPLvvt~~g-v~AlDAki~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~l  271 (425)
T 3mwd_A          193 EDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNP  271 (425)
T ss_dssp             HHTTEEEEEEEEEEEETTE-EEECCEEEEEEGGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEEEEESCT
T ss_pred             HhCCccEEEeeeeEEcCCc-eEEEeceeecccchhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccCccEEec
Confidence            9999999999999999988 999999999999999999875543 333    45678876553        568999999


Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCC--CCCCeeeecCCCCHHHHHH----HHHHHhcCCCccEEEEEecccccChHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGG--EPANFLDVGGGVNEESIIQ----AFRIISSDSNVKCILVNVFGGIVNCATIA  374 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl--~~aNPlDl~g~a~~~~~~~----al~~ll~dp~vd~vlv~~~~~~~~~~~ia  374 (525)
                      .|+||+|+||||++|.++|++..+|+  +|+||+|++|+++.+++++    +++++++||+|+++|||+++|+++|+.+|
T Consensus       272 dG~Ig~mvNGaGlamat~D~i~~~Gg~~~pANflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA  351 (425)
T 3mwd_A          272 KGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVA  351 (425)
T ss_dssp             TCSEEECCBSHHHHHHHHHHHHHTTCGGGBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHH
T ss_pred             CCeEEEEecCchHHHHHHHHHHHcCCCcCCcceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHH
Confidence            99999999999999999999999999  7999999999999998766    59999999999999999999999999999


Q ss_pred             ---HHHHHHHHhc-----CCCCcEEEEeCCcchHHHHHHHhhCC----CCccccCC-HHHHHHHHHHhh
Q psy7785         375 ---KGLVNACKSF-----KLSIPLVVRLEGTNVQEGKRILDESK----LPLIFASD-LDEAASLVNACK  430 (525)
Q Consensus       375 ---~~i~~a~~~~-----~~~kPivv~~~g~~~~~~~~~L~~~G----vpvf~~~s-~~~Av~Al~~l~  430 (525)
                         ++|+++.+++     ..++||||++.|++.++++++|++.|    +|+|  .. |+.++..+..++
T Consensus       352 ~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~eg~~il~~~g~~lgip~~--~~gpe~~~~~i~~~a  418 (425)
T 3mwd_A          352 ATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIH--VFGTETHMTAIVGMA  418 (425)
T ss_dssp             HHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHTCCEE--EECTTSCTTHHHHHH
T ss_pred             HHHhHHHHHHHHhhhccccCCCcEEEECCcCCHHHHHHHHHhCCcccCCceE--EeCccchHHHHHHHH
Confidence               9999999874     36899999999999999999999987    9988  43 777788777664

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.3e-60  Score=530.75  Aligned_cols=356  Identities=23%  Similarity=0.299  Sum_probs=309.4

Q ss_pred             hccccHHhhhh---hCCCC------CCCccccCCH---HHHHHHHHhcC-CCcEEEEEeeccccCCCCCccCCCcceEEE
Q psy7785           8 QIANFSYLVKP---VSTVH------STDKVCLEDA---RTATNILKDLN-FKEYVIKAQILAGGRGLGHFDNGFKSGVHF   74 (525)
Q Consensus         8 ~~~~~e~~~k~---~~GIp------vp~~~~~~~~---eea~~~a~~lg-~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l   74 (525)
                      +....||++|+   +|++|      .+++.+++++   +||.++++++| + |||||+|++++||||       .|||++
T Consensus         3 ~k~i~Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~lg~~-pvVvKaQv~~GgRGK-------aGGVkL   74 (829)
T 3pff_A            3 AKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQ-NLVVKPDQLIKRRGK-------LGLVGV   74 (829)
T ss_dssp             EEEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHHHHS-CEEEEECSSCSCTTT-------TTCCEE
T ss_pred             chhHhHHHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHhCCC-CEEEEecccccCCCc-------CCeEEE
Confidence            35789999999   89998      5677777766   88999999998 6 999999999999999       899999


Q ss_pred             eCCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCC--ceeEEEEEEEcCCCCccEEEecCCCCcccccccccC
Q psy7785          75 TNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNI--TRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT  152 (525)
Q Consensus        75 ~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~--~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~  152 (525)
                      +.|++|+++++++|+++...   ++..+..+++|+||+|+++  ++|+|+|+++||.  ||+|+||..||++||.++++.
T Consensus        75 ~~s~eEa~~aa~~iLg~~~~---~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~--gpvIm~s~eGGvdIE~vad~~  149 (829)
T 3pff_A           75 NLTLDGVKSWLKPRLGQEAT---VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAKA  149 (829)
T ss_dssp             EECHHHHHHHHTTTTTCEEE---ETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCCHHHHS
T ss_pred             ECCHHHHHHHHHHHHHHHHh---hcCCCceEEEEEEEecccCCCccEEEEEEEecCC--CCEEEEECCCCcchhhhhhhc
Confidence            99999999999999988652   1223445899999999975  5999999999998  899999999999999999743


Q ss_pred             CCeEEEEecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q psy7785         153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNL  232 (525)
Q Consensus       153 ~~~~~~~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l  232 (525)
                          .+++++|..+++.+++++   +                 ++.+|              ++.++++++++|.+||++
T Consensus       150 ----~~~~I~p~~gl~~~~a~~---~-----------------ll~g~--------------~~~d~~ala~~L~~Ly~l  191 (829)
T 3pff_A          150 ----QKLLVGVDEKLNPEDIKK---H-----------------LLVHA--------------PEDKKEILASFISGLFNF  191 (829)
T ss_dssp             ----EEEEEETTCCCCHHHHHH---T-----------------TTTTS--------------CGGGHHHHHHHHHHHHHH
T ss_pred             ----eEEecCCccccCHHHHHH---H-----------------HHcCC--------------CHHHHHHHHHHHHHHHHH
Confidence                468899988888877742   1                 12222              566999999999999999


Q ss_pred             HhcCCCceeeeeceeEecCCcEEEeeeEEEecCCchhcccccccc-CCC----CCCChHhhhhh--------ccCCceec
Q psy7785         233 FLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQ-NEV----SESDPREVDAS--------KYNLNYVG  299 (525)
Q Consensus       233 ~~~~~~~~leiNPl~v~~~g~~~alDa~i~ld~~a~frq~~i~~~-~~~----~~~~~~E~~a~--------~~~l~~~~  299 (525)
                      |.++|++++|||||+++++| ++|+||||.+||||.|||+..+.. ++.    ++.+++|..+.        +++|+|++
T Consensus       192 f~d~d~t~lEINPLvvt~dg-v~ALDAKi~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~  270 (829)
T 3pff_A          192 YEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLN  270 (829)
T ss_dssp             HHHTTEEEEEEEEEEEETTE-EEECCCEEEEEGGGHHHHHHHHCSCCCCCCSSCCCCHHHHHHHHHHHTSSSEEEEEESC
T ss_pred             HHhCCccEEEeeceEecCCc-eEEEeceeeeccchhhhCchhhhhhhccccccccCChhhhhhhhhhhhhccccCccEEe
Confidence            99999999999999999988 999999999999999999875543 332    46777776542        46899999


Q ss_pred             cCCcEEEEecchhHHHHHHHHHHHcCC--CCCCeeeecCCCCHHHHHHH----HHHHhcCCCccEEEEEecccccChHHH
Q psy7785         300 MDGNIGCLVNGAGLAMATMDIIKLHGG--EPANFLDVGGGVNEESIIQA----FRIISSDSNVKCILVNVFGGIVNCATI  373 (525)
Q Consensus       300 ~~~rIaIitnsGG~gvlaaD~~~~~Gl--~~aNPlDl~g~a~~~~~~~a----l~~ll~dp~vd~vlv~~~~~~~~~~~i  373 (525)
                      ++|+||+|.||+|++|.++|.+..+|+  +|+||+|++|+++.++++++    ++++++||+|+++|||+++|+++|+.+
T Consensus       271 ldG~Ig~mvNGaGlamaTmD~I~~~Gg~~~pANFlDvGGga~~e~v~~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~V  350 (829)
T 3pff_A          271 PKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNV  350 (829)
T ss_dssp             TTCSEEECCBSHHHHHHHHHHHHHTTCTTTBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCH
T ss_pred             cCCeEEeeccCchHHHHHHHHHHHcCCCCCCceeEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCccchHHH
Confidence            999999999999999999999999999  69999999999999987666    899999999999999999999999999


Q ss_pred             H---HHHHHHHHhc-----CCCCcEEEEeCCcchHHHHHHHhhCC----CCccc
Q psy7785         374 A---KGLVNACKSF-----KLSIPLVVRLEGTNVQEGKRILDESK----LPLIF  415 (525)
Q Consensus       374 a---~~i~~a~~~~-----~~~kPivv~~~g~~~~~~~~~L~~~G----vpvf~  415 (525)
                      |   ++|+++++++     +.++||||++.|++.++++++|++.|    +|++.
T Consensus       351 A~tf~GIi~A~k~~~~~~~~~~vPiVVRl~GtN~eeg~~il~~~g~~lgl~i~v  404 (829)
T 3pff_A          351 AATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHV  404 (829)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHCCCEEE
T ss_pred             HHHHhHHHHHHHHhhhhcccCCceEEEECCCCCHHHHHHHHHhCccccCCcEEE
Confidence            9   9999998874     35899999999999999999999875    88753

>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}

Probab=100.00  E-value=4.8e-33  Score=273.76  Aligned_cols=216  Identities=15%  Similarity=0.155  Sum_probs=181.4

Q ss_pred             hhhc-cccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeec-cccCCCCCccCCCcceEEEe-CCcc
Q psy7785           6 NQQI-ANFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQIL-AGGRGLGHFDNGFKSGVHFT-NNVQ   79 (525)
Q Consensus         6 ~~~~-~~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~-~~~rgK~~~~~~~~GGV~l~-~~~e   79 (525)
                      .+++ ...++++|+   +||||+|++.++++.+|+.++++++|| |||||++.. .+|||+       .|||.++ .|++
T Consensus        14 ~~~~~~l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~~a~~lg~-PvvvKp~~~~~~~r~~-------~gGv~~~v~~~~   85 (238)
T 1wr2_A           14 KQGRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGY-PVVLKLMSPQILHKSD-------AKVVMLNIKNEE   85 (238)
T ss_dssp             HTTCCEECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHHCS-SEEEEEECTTCCCHHH-------HTCEEEEECSHH
T ss_pred             hcCcCCCCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHHhCC-CEEEEEccCCCCcCCc-------cCCEEEeCCCHH
Confidence            3444 456789998   899999999999999999999999997 999999876 566655       7999995 7999


Q ss_pred             cHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEE
Q psy7785          80 DIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTI  159 (525)
Q Consensus        80 ea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~  159 (525)
                      ++++++++++.....+    ..+..+.+|+||+|+++++|+++++..|+.| ||++++| .||+++|.+.+    .  ++
T Consensus        86 el~~a~~~~~~~~~~~----~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~-g~v~~~~-~Gg~~iE~~~d----~--~~  153 (238)
T 1wr2_A           86 ELKKKWEEIHENAKKY----RPDAEILGVLVAPMLKPGREVIIGVTEDPQF-GHAIMFG-LGGIFVEILKD----V--TF  153 (238)
T ss_dssp             HHHHHHHHHHHHHHHH----CTTCCCCEEEEEECCCCCEEEEEEEEEETTT-EEEEEEE-ECSTTHHHHCC----C--EE
T ss_pred             HHHHHHHHHHHhhhhh----CCCCccceEEEEECCCCCeEEEEEEEeCCCC-CcEEEEe-cCCceeeeecc----e--ee
Confidence            9999999998754311    1244468999999999899999999999998 9999999 99999998864    3  45


Q ss_pred             ecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCC--
Q psy7785         160 PIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVD--  237 (525)
Q Consensus       160 ~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~--  237 (525)
                      .++|   ++..++++|++.++.            ..++.|+||           .++.|++++.+++.+||+++.+.+  
T Consensus       154 ~~~P---l~~~~~~~~~~~~~~------------~~~~~g~~G-----------~~~~d~~~l~~~l~~l~~~~~~~~~~  207 (238)
T 1wr2_A          154 RLVP---ITEKDARKMIQEIKA------------YPILAGARG-----------EEPADIDAIVDMLLKVSKLVDDLKDY  207 (238)
T ss_dssp             EESS---CCHHHHHHHHHTSTT------------HHHHHCC-------------CCCBCHHHHHHHHHHHHHHHHHTTTT
T ss_pred             ecCC---CCHHHHHHHHHHHHH------------HHHhcCCCC-----------CChhhHHHHHHHHHHHHHHHHcCCCC
Confidence            6677   999999999998753            345556655           478899999999999999999875  


Q ss_pred             CceeeeeceeEecCC-cEEEeeeEEEecCCc
Q psy7785         238 ATQLEINPLVETDER-EVISVDAKINFDDNA  267 (525)
Q Consensus       238 ~~~leiNPl~v~~~g-~~~alDa~i~ld~~a  267 (525)
                      +.++|||||+++++| +++|+||++++|+|.
T Consensus       208 ~~~lEINPl~~~~~g~~~~alDa~~~~~~~~  238 (238)
T 1wr2_A          208 IKEMDLNPVFVYNKGEGAVIVDSRIILKPKD  238 (238)
T ss_dssp             EEEEEEEEEEECBTTSCEEECCEEEEECCC-
T ss_pred             eEEEeccCeEEeCCCCcEEEEEEEEEeCCCC
Confidence            999999999999986 699999999999873

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=99.87  E-value=3.6e-22  Score=214.01  Aligned_cols=159  Identities=18%  Similarity=0.264  Sum_probs=134.7

Q ss_pred             CchhccccccccCCCCCCChHhhhhhccCCceecc--CCcEEEEecchhHHHHHHHHHHHcCCC----------------
Q psy7785         266 NAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGM--DGNIGCLVNGAGLAMATMDIIKLHGGE----------------  327 (525)
Q Consensus       266 ~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~--~~rIaIitnsGG~gvlaaD~~~~~Gl~----------------  327 (525)
                      ++.|||+|+++++     ++.|+.+....|+| ++  ++||+|||||||+|++++|+++.+|++                
T Consensus       262 ~AafRqaGv~~v~-----~~~El~~~~~~l~~-~~~~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~l  335 (457)
T 2csu_A          262 EAAFKQSGVLVAN-----TIDEMLSMARAFSQ-PLPRGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFL  335 (457)
T ss_dssp             HHHHHHTTCEEES-----SHHHHHHHHTTTTS-CCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHS
T ss_pred             HHHHHhCCCeEEC-----CHHHHHHHHHHhcC-CCCCCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhC
Confidence            4679999999884     45888888888888 66  689999999999999999999999985                


Q ss_pred             -----CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-c--cChHHHHHHHHHHHHhcCCCCcEEEEeC-Ccc
Q psy7785         328 -----PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-I--VNCATIAKGLVNACKSFKLSIPLVVRLE-GTN  398 (525)
Q Consensus       328 -----~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~--~~~~~ia~~i~~a~~~~~~~kPivv~~~-g~~  398 (525)
                           ++||+|++|+++++.|.++++++++||++|++++++..+ .  ..++.+++.++++.++...+||++++|. |++
T Consensus       336 p~~~~~~NPlDl~g~a~~~~~~~al~~~l~dp~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~  415 (457)
T 2csu_A          336 PPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYV  415 (457)
T ss_dssp             CTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTT
T ss_pred             ccccccCCCeeCCCCCCHHHHHHHHHHHhcCCCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcc
Confidence                 689999999999999999999999999999999976322 1  3356677778777665335799998654 456


Q ss_pred             hHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcc
Q psy7785         399 VQEGKRILDESKLPLIFASDLDEAASLVNACKSF  432 (525)
Q Consensus       399 ~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~  432 (525)
                      .++.+++|+++|||+|  ++|++|++++.++.++
T Consensus       416 ~~~~~~~L~~~Gip~~--~spe~Av~al~~l~~~  447 (457)
T 2csu_A          416 SEKAKELLEKNGIPTY--ERPEDVASAAYALVEQ  447 (457)
T ss_dssp             THHHHHHHHTTTCCEE--SSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCcc--CCHHHHHHHHHHHHHH
Confidence            6788999999999999  9999999999987654

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=99.72  E-value=1.5e-17  Score=177.76  Aligned_cols=166  Identities=20%  Similarity=0.192  Sum_probs=127.5

Q ss_pred             eceeEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCcee--------cc-CCcEEEEecchhHH
Q psy7785         244 NPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYV--------GM-DGNIGCLVNGAGLA  314 (525)
Q Consensus       244 NPl~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~--------~~-~~rIaIitnsGG~g  314 (525)
                      -|+++...|           ...+-|||.|+++++     +.+|+......|...        .+ ++||+|||||||+|
T Consensus       199 KPVV~~k~G-----------rs~~g~r~~Gvirv~-----~~~el~~~a~~l~~~~~~~~~qp~~~G~rvaivtn~Gg~g  262 (480)
T 3dmy_A          199 KPTVALFLG-----------YTPAVARDENVWFAS-----SLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLA  262 (480)
T ss_dssp             SCEEEEETT-----------CCCSSSEETTEEEES-----SHHHHHHHHHHHHHHHHHHHHHCCCSCCEEEEEESCHHHH
T ss_pred             CCEEEEEeC-----------CCCcccccCCEEEEC-----CHHHHHHHHHHHhcCccccccCCCCCCCeEEEEECCHHHH
Confidence            378887777           222239999999995     447777665555543        12 57999999999999


Q ss_pred             HHHHHHHHHcCCC-----------------------------CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe--
Q psy7785         315 MATMDIIKLHGGE-----------------------------PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV--  363 (525)
Q Consensus       315 vlaaD~~~~~Gl~-----------------------------~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--  363 (525)
                      ++++|.|.+ |+.                             .+||+|++   +++.|.++++.+++||++|++++.+  
T Consensus       263 vlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~---d~~~~~~al~~~l~D~~vd~vlv~~v~  338 (480)
T 3dmy_A          263 AEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMI---DPTLRNQLIADLGAKPQVRVLLLDVVI  338 (480)
T ss_dssp             HHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTT---CCHHHHHHHHHGGGCTTEEEEEEEEEC
T ss_pred             HHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCC---CHHHHHHHHHHHhcCCCCCEEEEEeec
Confidence            999999999 541                             46899988   6788999999999999999998843  


Q ss_pred             -cccccCh-HHHHHHHHHHHHhcCCCCcE-EEEeCC-cc-h----HHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785         364 -FGGIVNC-ATIAKGLVNACKSFKLSIPL-VVRLEG-TN-V----QEGKRILDESKLPLIFASDLDEAASLVNACKS  431 (525)
Q Consensus       364 -~~~~~~~-~~ia~~i~~a~~~~~~~kPi-vv~~~g-~~-~----~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~  431 (525)
                       ++...+. ..+++.|+++.+....+||+ +++|+| +. .    .+.++.|+++|||+|  ++|++|++++.++++
T Consensus       339 ~~~~~~d~~~~~a~ai~~~~~~~~~~kp~v~v~~~~g~~~~~~~~~~~~~~L~~aGIp~f--~spe~Av~a~~~l~~  413 (480)
T 3dmy_A          339 GFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVV--SSLPEATLLAAALIH  413 (480)
T ss_dssp             STTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTSTTCHHHHHHHHHHTTCEEC--SSHHHHHHHHHHHTS
T ss_pred             CCCCCCChHHHHHHHHHHHHHhccCCCCeEEEEEecCcccchhhHHHHHHHHHhCCCccc--CCHHHHHHHHHHHHh
Confidence             3334554 88999999987762227994 666654 32 2    235689999999999  999999999999875

>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=1.1e-09  Score=92.78  Aligned_cols=87  Identities=16%  Similarity=0.215  Sum_probs=68.4

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+++.+++.++++++|| |+|+|+....+  ++         ||.+..|.+++.++++++......  
T Consensus        18 ~~gip~p~~~~~~~~~~~~~~~~~~~~~~-P~vvKp~~~~~--~~---------gv~~v~~~~el~~~~~~~~~~~~~--   83 (108)
T 2cqy_A           18 KAEVNTIPGFDGVVKDAEEAVRIAREIGY-PVMIKASAGGG--GK---------GMRIAWDDEETRDGFRLSSQEAAS--   83 (108)
T ss_dssp             SSCCCCCSCCCSCBSSHHHHHHHHHHHCS-SEEEEETTSCC--TT---------TCEEESSHHHHHHHHHHHHHHHHH--
T ss_pred             HcCCCCCCCcccccCCHHHHHHHHHhcCC-CEEEEECCCCC--Cc---------cEEEeCCHHHHHHHHHHHHHHHHh--
Confidence            8999999998  88999999999999997 99999974432  23         788888999999999988753210  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEE
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCI  124 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv  124 (525)
                      .   .+  ..+++||+|+++.+|+.+++
T Consensus        84 ~---~~--~~~~lvee~i~g~~E~~v~v  106 (108)
T 2cqy_A           84 S---FG--DDRLLIEKFIDNPRHISGPS  106 (108)
T ss_dssp             H---TS--SCCEEEEECCSSSSCCCSCC
T ss_pred             h---cC--CCcEEEeeccCCCcEEEEEe
Confidence            0   01  25799999999777987765

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A

Probab=98.74  E-value=1.1e-07  Score=96.39  Aligned_cols=93  Identities=18%  Similarity=0.185  Sum_probs=72.7

Q ss_pred             hCCCCCCCccccCCHHHHHHHH----HhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNIL----KDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a----~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~   94 (525)
                      ++|||+|++.++++.+++.+++    +++|| |||||+....++  +         ||.+..+.+++.++++++...   
T Consensus       117 ~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~-PvvvKP~~~~~s--~---------Gv~~v~~~~el~~a~~~~~~~---  181 (317)
T 4eg0_A          117 QTGVPTPPFETVMRGDDYAARATDIVAKLGL-PLFVKPASEGSS--V---------AVLKVKTADALPAALSEAATH---  181 (317)
T ss_dssp             HTTCCCCCEEEEETTSCHHHHHHHHHHHHCS-CEEEEECC----------------CCEEECSGGGHHHHHHHHTTT---
T ss_pred             HCCcCCCCEEEEECchhHHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhC---
Confidence            7999999999999988887777    88997 999999755332  2         677888999999998876321   


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                                ...++||+|++.++|+.+++..|..+  |++.+.
T Consensus       182 ----------~~~~lvEe~i~~G~E~~v~vl~~~~~--~~~~i~  213 (317)
T 4eg0_A          182 ----------DKIVIVEKSIEGGGEYTACIAGDLDL--PLIKIV  213 (317)
T ss_dssp             ----------CSEEEEEECCCSSEEEEEEEETTCCC--CCEEEE
T ss_pred             ----------CCeEEEEcCCCCCcEEEEEEECCccc--ceEEEe
Confidence                      25799999998789999999988644  555555

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A

Probab=98.67  E-value=4.9e-08  Score=103.52  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=79.2

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++++|| |+|||+....+|  |         ||.+..|.+|+.+++++++.....    
T Consensus       117 ~~GIptp~~~~~~~~~ea~~~~~~~g~-PvVvKp~~~~gg--~---------GV~iv~~~~el~~a~~~~~~~~~~----  180 (431)
T 3mjf_A          117 RHNIPSAEYQNFTDVEAALAYVRQKGA-PIVIKADGLAAG--K---------GVIVAMTQEEAETAVNDMLAGNAF----  180 (431)
T ss_dssp             HTTCSBCCEEEESCHHHHHHHHHHHCS-SEEEEESSSCTT--C---------SEEEECSHHHHHHHHHHHHTTHHH----
T ss_pred             HcCCCCCCeEeeCCHHHHHHHHHHcCC-eEEEEECCCCCC--C---------cEEEeCCHHHHHHHHHHHHhhccc----
Confidence            899999999999999999999999997 999999866543  3         788889999999999998743211    


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                         |.....++||||++ +.|+.+.+..|..   .++.++
T Consensus       181 ---g~~~~~vlvEe~i~-G~E~sv~~~~dg~---~~~~~~  213 (431)
T 3mjf_A          181 ---GDAGHRIVVEEFLD-GEEASFIVMVDGE---NVLPMA  213 (431)
T ss_dssp             ---HCCCCCEEEEECCC-SEEEEEEEEEESS---CEEECC
T ss_pred             ---cCCCCeEEEEEeeC-CcEEEEEEEEcCC---EEEEEE
Confidence               11135799999999 7999999999864   355544

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}

Probab=98.65  E-value=8e-08  Score=102.22  Aligned_cols=91  Identities=16%  Similarity=0.213  Sum_probs=76.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++++|| |+|||+....+|  |         ||.+..|.+|+.+++++++....     
T Consensus       133 ~~GIp~p~~~~~~~~~ea~~~~~~~g~-PvVvKp~~~~gg--~---------GV~iv~~~eel~~a~~~~~~~~~-----  195 (442)
T 3lp8_A          133 RYGIPTAKYGYFVDTNSAYKFIDKHKL-PLVVKADGLAQG--K---------GTVICHTHEEAYNAVDAMLVHHK-----  195 (442)
T ss_dssp             HHTCCBCCEEEESSHHHHHHHHHHSCS-SEEEEESSCCTT--T---------SEEEESSHHHHHHHHHHHHTSCT-----
T ss_pred             HCCCCCCCEEEECCHHHHHHHHHHcCC-cEEEeECCCCCC--C---------eEEEeCCHHHHHHHHHHHHhhcc-----
Confidence            799999999999999999999999997 999999866543  3         78888899999999999875311     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                        .|.....++||||++ +.|+.+.+..|..
T Consensus       196 --~g~~~~~vlvEe~i~-G~E~sv~~~~dg~  223 (442)
T 3lp8_A          196 --FGEAGCAIIIEEFLE-GKEISFFTLVDGS  223 (442)
T ss_dssp             --TGGGGSSEEEEECCC-SEEEEEEEEEESS
T ss_pred             --cCCCCCeEEEEEeec-CcEEEEEEEECCC
Confidence              122235799999999 7999999999865

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*

Probab=98.64  E-value=4.8e-07  Score=94.54  Aligned_cols=92  Identities=14%  Similarity=0.245  Sum_probs=74.1

Q ss_pred             hCCCCCCCccccCCHH----HHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVCLEDAR----TATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~e----ea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~   94 (525)
                      ++|||+|++.++++.+    ++.++++++|| |||||+....++  +         ||.+..+.+++.+++++++..   
T Consensus       169 ~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~~ggss--~---------Gv~~v~~~~el~~a~~~a~~~---  233 (386)
T 3e5n_A          169 DARLAVAPFVCFDRHTAAHADVDTLIAQLGL-PLFVKPANQGSS--V---------GVSQVRTADAFAAALALALAY---  233 (386)
T ss_dssp             HTTCCBCCEEEEEHHHHTTCCHHHHHHHHCS-SEEEEESBSCSS--T---------TCEEECSGGGHHHHHHHHTTT---
T ss_pred             HCCCCCCCEEEEeCcccchhhHHHHHHhcCC-CEEEEECCCCcC--C---------CEEEECCHHHHHHHHHHHHhC---
Confidence            7999999999999888    78888999997 999999755332  2         678888999999998887431   


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                                ...++||++++ ++|+.+++..|+.  .+++..|
T Consensus       234 ----------~~~vlVEe~I~-G~E~~v~vl~~~~--~~~~~~g  264 (386)
T 3e5n_A          234 ----------DHKVLVEAAVA-GREIECAVLGNAV--PHASVCG  264 (386)
T ss_dssp             ----------CSEEEEEECCC-SEEEEEEEECSSS--CEEEEEE
T ss_pred             ----------CCcEEEEcCCC-CeEEEEEEEeCCC--ceEEEeE
Confidence                      25799999998 5999999998865  3555444

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=98.60  E-value=1.9e-07  Score=98.61  Aligned_cols=90  Identities=13%  Similarity=0.108  Sum_probs=73.9

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHh----cCCCcEEEEEe-eccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKD----LNFKEYVIKAQ-ILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL   93 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~----lg~~PvVlK~~-~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~   93 (525)
                      ++|||+|++..+++.+++.+++++    + | |+|||+. .-.+  ||         ||.+..|.+++.++++.+-    
T Consensus       143 ~~Gip~p~~~~v~~~~e~~~~~~~~~~~~-~-P~VvKp~~~g~~--G~---------Gv~~v~~~~el~~a~~~~~----  205 (419)
T 4e4t_A          143 ASGVPVAPHVVIESAAALAALDDAALDAV-L-PGILKTARLGYD--GK---------GQVRVSTAREARDAHAALG----  205 (419)
T ss_dssp             HTTCCBCCEEEECSHHHHHTSCHHHHHTT-C-SEEEEESSSCCT--TT---------TEEEECSHHHHHHHHHHTT----
T ss_pred             HcCcCCCCeEEECCHHHHHHHHHhhcccc-C-CEEEEecCCCCC--CC---------ceEEECCHHHHHHHHHhcC----
Confidence            799999999999999999998888    9 8 9999995 2222  34         7889999999998887641    


Q ss_pred             ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                                 ...++||+|++.++|+.+.+.+|..  |-++.+.
T Consensus       206 -----------~~~~lvEe~i~~~~Eisv~v~~~~~--G~~~~~~  237 (419)
T 4e4t_A          206 -----------GVPCVLEKRLPLKYEVSALIARGAD--GRSAAFP  237 (419)
T ss_dssp             -----------TCCEEEEECCCEEEEEEEEEEECTT--SCEEECC
T ss_pred             -----------CCcEEEeecCCCCeEEEEEEEEcCC--CCEEEEe
Confidence                       1458999999988999999999975  4566665

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=98.56  E-value=1.6e-06  Score=90.29  Aligned_cols=92  Identities=12%  Similarity=0.161  Sum_probs=74.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++++|| |+|||+....+ .|+         ||.+..+.+++.++++.+.         
T Consensus       122 ~~Gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~~~~-~g~---------Gv~~v~~~~el~~~~~~~~---------  181 (389)
T 3q2o_A          122 KAGLPVATYRLVQNQEQLTEAIAELSY-PSVLKTTTGGY-DGK---------GQVVLRSEADVDEARKLAN---------  181 (389)
T ss_dssp             HTTCCCCCEEEESSHHHHHHHHHHHCS-SEEEEESSCCS-SSC---------CEEEESSGGGHHHHHHHHH---------
T ss_pred             HCCCCCCCeEEECCHHHHHHHHHhcCC-CEEEEeCCCCC-CCC---------CeEEECCHHHHHHHHHhcC---------
Confidence            799999999999999999999999997 99999954321 123         7888899999998887652         


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                            -..++||+|++++.|+.+.+.+|..  |-++.++
T Consensus       182 ------~~~~lvEe~i~g~~E~~v~~~~~~~--G~~~~~~  213 (389)
T 3q2o_A          182 ------AAECILEKWVPFEKEVSVIVIRSVS--GETKVFP  213 (389)
T ss_dssp             ------HSCEEEEECCCCSEEEEEEEEECTT--CCEEECC
T ss_pred             ------CCCEEEEecccCceEEEEEEEEcCC--CCEEEec
Confidence                  1358999999978999999999864  3444444

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=98.50  E-value=8.1e-07  Score=93.27  Aligned_cols=84  Identities=18%  Similarity=0.225  Sum_probs=71.5

Q ss_pred             hCCCCCCCccccC--CHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785          19 VSTVHSTDKVCLE--DARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        19 ~~GIpvp~~~~~~--~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~   95 (525)
                      ++|||+|++..++  +.+++.++++++|| |+|||+.... +  ||         ||.+..+.+++.++++.+.      
T Consensus       133 ~~Gip~p~~~~~~~~~~~~~~~~~~~~g~-P~VvKp~~gg~~--g~---------Gv~~v~~~~el~~a~~~~~------  194 (403)
T 3k5i_A          133 KYGIPMAEHRELVENTPAELAKVGEQLGY-PLMLKSKTMAYD--GR---------GNFRVNSQDDIPEALEALK------  194 (403)
T ss_dssp             TTTCCBCCEEEESSCCHHHHHHHHHHHCS-SEEEEESSSCCT--TT---------TEEEECSTTSHHHHHHHTT------
T ss_pred             HCCcCCCCEEEEcCCCHHHHHHHHHHhCC-CEEEEeCCCCcC--CC---------CEEEECCHHHHHHHHHhcC------
Confidence            7999999999999  99999999999997 9999996432 3  34         7889899999998887641      


Q ss_pred             ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                               -..++||+|++.+.|+.+.+.+|+.
T Consensus       195 ---------~~~~lvEe~i~~~~E~sv~v~~~~~  219 (403)
T 3k5i_A          195 ---------DRPLYAEKWAYFKMELAVIVVKTKD  219 (403)
T ss_dssp             ---------TSCEEEEECCCEEEEEEEEEEECSS
T ss_pred             ---------CCcEEEecCCCCCeEEEEEEEEcCC
Confidence                     1469999999988999999999964

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}

Probab=98.50  E-value=2.2e-07  Score=95.94  Aligned_cols=91  Identities=15%  Similarity=0.149  Sum_probs=73.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+|++..+++.+++.++++++|| |+|+|+.... +|  +         ||.+..|.+++.++++++.        
T Consensus       106 ~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~~~~~g--~---------Gv~~v~~~~el~~~~~~~~--------  165 (369)
T 3aw8_A          106 GLGVPTPPFHPVDGPEDLEEGLKRVGL-PALLKTRRGGYDG--K---------GQALVRTEEEALEALKALG--------  165 (369)
T ss_dssp             HHTCCCCCEEEESSHHHHHHHHTTTCS-SEEEEECCC-----------------EEEECSHHHHHHHHTTTC--------
T ss_pred             HCCCCCCCceeeCCHHHHHHHHHHcCC-CEEEEEcCCCCCc--c---------eEEEECCHHHHHHHHHhcC--------
Confidence            799999999999999999999999997 9999997654 43  3         8888889998887776541        


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                             ...++||+|++.+.|+.+.+..|+.  |.++.++
T Consensus       166 -------~~~~lvEe~i~~g~e~sv~~~~d~~--G~~~~~~  197 (369)
T 3aw8_A          166 -------GRGLILEGFVPFDREVSLLAVRGRT--GEVAFYP  197 (369)
T ss_dssp             -------SSSEEEEECCCCSEEEEEEEEECTT--SCEEECC
T ss_pred             -------CCcEEEEEcCCCCEEEEEEEEECCC--CCEEEEC
Confidence                   2469999999988999999999975  4566665

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=98.50  E-value=3.5e-07  Score=96.17  Aligned_cols=91  Identities=21%  Similarity=0.190  Sum_probs=74.8

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+|+.++++++|| |+|||+....+|  +         ||.+..|.+|+.+++++++....   . 
T Consensus       116 ~~gip~p~~~~~~~~~e~~~~~~~~g~-PvvvKp~~~~gg--~---------Gv~~v~~~~el~~a~~~~~~~~~---~-  179 (412)
T 1vkz_A          116 KYGIRTARFEVAETPEELREKIKKFSP-PYVIKADGLARG--K---------GVLILDSKEETIEKGSKLIIGEL---I-  179 (412)
T ss_dssp             HTTCCCCCEEEESSHHHHHHHHTTSCS-SEEEEESSCCSS--C---------CEEEESSHHHHHHHHHHHHHTSS---S-
T ss_pred             HcCCCCCCEEEECCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhhcc---c-
Confidence            899999999999999999999999997 999999765443  3         78899999999999998875320   0 


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                        .|. ...++||+|++ +.|+.+.+..|+.
T Consensus       180 --~g~-~~~vlvEe~i~-G~E~sv~~~~dg~  206 (412)
T 1vkz_A          180 --KGV-KGPVVIDEFLA-GNELSAMAVVNGR  206 (412)
T ss_dssp             --TTC-CSCEEEEECCC-SEEEEEEEEEETT
T ss_pred             --cCC-CCeEEEEECCc-CcEEEEEEEECCC
Confidence              121 13799999999 8999999999864

>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A

Probab=98.49  E-value=4e-07  Score=99.27  Aligned_cols=95  Identities=18%  Similarity=0.251  Sum_probs=76.8

Q ss_pred             hCCCCCCCccc-----------------------------cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCc
Q psy7785          19 VSTVHSTDKVC-----------------------------LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFK   69 (525)
Q Consensus        19 ~~GIpvp~~~~-----------------------------~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~   69 (525)
                      ++|||+|++..                             +++.+++.++++++|| |||||+..-.+  ||        
T Consensus       174 ~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igy-PvVVKp~~ggG--G~--------  242 (540)
T 3glk_A          174 TLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGF-PLMIKASEGGG--GK--------  242 (540)
T ss_dssp             HTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCS-SEEEEETTCC-------------
T ss_pred             HcCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCC-cEEEEECCCCC--CC--------
Confidence            79999999987                             8899999999999997 99999964433  33        


Q ss_pred             ceEEEeCCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          70 SGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        70 GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                       ||.+..+.+|+.++++++.....           ...++||+|+++.+|+.+.+..|+.  |.++.++
T Consensus       243 -Gv~iv~~~~eL~~a~~~~~~~~~-----------~~~vlVEe~I~g~rei~V~vl~d~~--G~vv~l~  297 (540)
T 3glk_A          243 -GIRKAESAEDFPILFRQVQSEIP-----------GSPIFLMKLAQHARHLEVQILADQY--GNAVSLF  297 (540)
T ss_dssp             --EEEECSTTTHHHHHHHHHHHST-----------TCCEEEEECCSSEEEEEEEEEECTT--SCEEEEE
T ss_pred             -CEEEECCHHHHHHHHHHHHhhcc-----------CCCEEEEEecCCCcEEEEEEEEcCC--CCEEEEe
Confidence             78888999999999988864311           2569999999977999999999974  6777665

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*

Probab=98.48  E-value=6.9e-07  Score=94.75  Aligned_cols=99  Identities=18%  Similarity=0.289  Sum_probs=79.3

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+++.+++.++++++|| |||||+..-.+  |+         ||.+..+.+++.++++++....... 
T Consensus       129 ~~Gip~p~~~~~~~~~~~e~~~~~~~~g~-PvvvKp~~g~g--g~---------Gv~~v~~~~el~~~~~~~~~~~~~~-  195 (446)
T 3ouz_A          129 RAGVPVIPGSDGALAGAEAAKKLAKEIGY-PVILKAAAGGG--GR---------GMRVVENEKDLEKAYWSAESEAMTA-  195 (446)
T ss_dssp             HTTCCBCSBCSSSCCSHHHHHHHHHHHCS-SEEEEETTCCT--TC---------SEEEECSGGGHHHHHHHHHHHHHHH-
T ss_pred             HcCCCcCCCcccCCCCHHHHHHHHHHhCC-CEEEEECCCCC--CC---------CEEEECCHHHHHHHHHHHHHHHHHh-
Confidence            7999999997  78999999999999997 99999964333  23         7999999999999999886532210 


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                          .+  ...++||+|+++.+|+.+.+..|..  |.++.++
T Consensus       196 ----~~--~~~~lvEe~i~g~~e~~v~v~~d~~--g~~~~~~  229 (446)
T 3ouz_A          196 ----FG--DGTMYMEKYIQNPRHIEVQVIGDSF--GNVIHVG  229 (446)
T ss_dssp             ----HS--CCCEEEEECCSSCEEEEEEEEECTT--SCEEEEE
T ss_pred             ----cC--CCCEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe
Confidence                01  2469999999987999999999975  5677765

>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*

Probab=98.46  E-value=5.9e-07  Score=98.64  Aligned_cols=95  Identities=18%  Similarity=0.251  Sum_probs=78.7

Q ss_pred             hCCCCCCCccc-----------------------------cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCc
Q psy7785          19 VSTVHSTDKVC-----------------------------LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFK   69 (525)
Q Consensus        19 ~~GIpvp~~~~-----------------------------~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~   69 (525)
                      ++|||+|++..                             +++.+++.++++++|| |||||+..-.+  ||        
T Consensus       190 ~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGy-PvVVKp~~GgG--Gk--------  258 (587)
T 3jrx_A          190 TLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGF-PLMIKASEGGG--GK--------  258 (587)
T ss_dssp             HTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCS-SEEEEETTCCS--SS--------
T ss_pred             HcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCC-eEEEEeCCCCC--CC--------
Confidence            79999999987                             8899999999999997 99999964433  34        


Q ss_pred             ceEEEeCCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          70 SGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        70 GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                       ||.+..+.+|+.++++++.....           ...++||+|+++.+|+.+.+..|..  |.++.++
T Consensus       259 -Gv~iV~s~eEL~~a~~~a~~~~~-----------~~~vlVEeyI~g~rei~V~vl~D~~--G~vv~l~  313 (587)
T 3jrx_A          259 -GIRKAESAEDFPILFRQVQSEIP-----------GSPIFLMKLAQHARHLEVQILADQY--GNAVSLF  313 (587)
T ss_dssp             -SEEEECSTTTHHHHHHHHHHHST-----------TCCEEEEECCCSCEEEEEEEEECSS--SCEEEEE
T ss_pred             -CeEEeCCHHHHHHHHHHHHhhcc-----------CCCEEEEEecCCCcEEEEEEEEcCC--CCEEEEe
Confidence             78899999999999988864311           2569999999977999999999974  5666654

>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*

Probab=98.42  E-value=6.3e-07  Score=94.20  Aligned_cols=91  Identities=15%  Similarity=0.149  Sum_probs=74.9

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++++|| |+|+|+....+|  |         ||.+..+.+++.+++++++....     
T Consensus       112 ~~gip~p~~~~~~~~~~~~~~~~~~~~-P~vvKp~~~~~g--~---------Gv~~v~~~~el~~~~~~~~~~~~-----  174 (422)
T 2xcl_A          112 KYDIPTAEYETFTSFDEAKAYVQEKGA-PIVIKADGLAAG--K---------GVTVAMTEEEAIACLHDFLEDEK-----  174 (422)
T ss_dssp             HTTCCBCCEEEESCHHHHHHHHHHHCS-SEEEEESSCGGG--T---------CEEEESSHHHHHHHHHHHHTSCT-----
T ss_pred             HcCCCCCCeEEECCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------cEEEECCHHHHHHHHHHHHhhhh-----
Confidence            899999999999999999999999997 999999755443  3         78888999999999998875321     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                        .|.....++||+|++ +.|+.+.+..|..
T Consensus       175 --~g~~~~~~lvEe~i~-g~E~sv~~~~dG~  202 (422)
T 2xcl_A          175 --FGDASASVVIEEYLS-GEEFSLMAFVKGE  202 (422)
T ss_dssp             --TGGGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred             --ccCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence              121235799999999 7999999998754

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}

Probab=98.42  E-value=3.2e-07  Score=103.47  Aligned_cols=104  Identities=13%  Similarity=0.185  Sum_probs=80.5

Q ss_pred             hCCCCCCCccccCCHHHHHHHH-HhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeC---CcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNIL-KDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN---NVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a-~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~---~~eea~~a~~~l~~~~~~   94 (525)
                      ++|||||++.++++.+++.+++ +.+|| |||||+..  ++.|+         ||.+..   +.+++.++++.++..   
T Consensus       494 ~~GIPvP~~~~~~~~~ea~~~~~~~~g~-PvVVKP~~--G~~G~---------GV~iv~~~~s~eel~~a~~~~~~~---  558 (750)
T 3ln6_A          494 EKHFPTPFGDEFTDRKEALNYFSQIQDK-PIVVKPKS--TNFGL---------GISIFKTSANLASYEKAIDIAFTE---  558 (750)
T ss_dssp             HTTCCCCCCCCEETTTTHHHHHHHSSSS-CEEEEETT--CCSSS---------SCEEESSCCCHHHHHHHHHHHHHH---
T ss_pred             HCCcCCCCEEEECCHHHHHHHHHHhcCC-cEEEEeCC--CCCCC---------CEEEEeCCCCHHHHHHHHHHHHhh---
Confidence            8999999999999999998877 77897 99999953  33344         788865   889999999887531   


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCcc-----EEEecCCCCcccccccc
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGP-----VVIISPSGGTDIENVAA  150 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gp-----vi~~g~~GGv~iE~~~~  150 (525)
                                ...++||+|++ |.|+.+.+..|+.+ +.     ..+.| -|+..|+.+-+
T Consensus       559 ----------~~~vlVEefI~-G~E~~v~Vvgg~vv-aa~~r~p~~v~G-dG~~tI~eLI~  606 (750)
T 3ln6_A          559 ----------DSAILVEEYIE-GTEYRFFVLEGDCI-AVLLRVAANVVG-DGIHTISQLVK  606 (750)
T ss_dssp             ----------CSEEEEEECCC-SEEEEEEEETTEEE-EEEEEECCEEEC-CTTCCHHHHHH
T ss_pred             ----------CCcEEEEeccC-CCEEEEEEECCEEE-EEEEEecceEec-CCccCHHHHHH
Confidence                      25799999998 79999999877654 32     23456 68777776653

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=98.41  E-value=3.1e-05  Score=82.62  Aligned_cols=212  Identities=14%  Similarity=0.220  Sum_probs=134.0

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC  381 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~  381 (525)
                      |+||+||-||+.+....|.+...|+-....+-++++++. .+.++++.+.+||++++|++..-+ +.+.....+....+.
T Consensus       150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~-~~~d~l~~~~~D~~t~~I~l~~E~-i~~~~~f~~~a~~~~  227 (457)
T 2csu_A          150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADV-DFAELMEYLADTEEDKAIALYIEG-VRNGKKFMEVAKRVT  227 (457)
T ss_dssp             CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSS-CHHHHHHHHTTCSSCCEEEEEESC-CSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCC-CHHHHHHHHhcCCCCCEEEEEEec-CCCHHHHHHHHHHhc
Confidence            899999999999999999999999987788888887643 489999999999999998875432 122322222222222


Q ss_pred             HhcCCCCcEEEEeCCcc-----------------hHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc-c-----------
Q psy7785         382 KSFKLSIPLVVRLEGTN-----------------VQEGKRILDESKLPLIFASDLDEAASLVNACKS-F-----------  432 (525)
Q Consensus       382 ~~~~~~kPivv~~~g~~-----------------~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~-~-----------  432 (525)
                          .+|||++...|..                 .......|++.|+...  +++.+-......+.. .           
T Consensus       228 ----~~KPVv~~k~G~~~~g~~aa~~Htgalag~~~~~~AafRqaGv~~v--~~~~El~~~~~~l~~~~~~g~rvaiitn  301 (457)
T 2csu_A          228 ----KKKPIIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVA--NTIDEMLSMARAFSQPLPRGNKVAIMTN  301 (457)
T ss_dssp             ----HHSCEEEEECC------------------CHHHHHHHHHHTTCEEE--SSHHHHHHHHTTTTSCCCSSSEEEEEES
T ss_pred             ----CCCCEEEEEcCCCccccchhhcccCccCCcHHHHHHHHHhCCCeEE--CCHHHHHHHHHHhcCCCCCCCcEEEEEC
Confidence                3599998766521                 1112447888999877  887664443322221 0           


Q ss_pred             ---------------cCCCCe---------------------EEEeCC-CCHH---HHH-HHHHHCCCCe---EEE----
Q psy7785         433 ---------------KLSIPL---------------------VVRLEG-TNVQ---EGK-RILDESKLPL---IFA----  464 (525)
Q Consensus       433 ---------------~~~~P~---------------------~~~l~g-~~e~---eak-~LL~ayGIpv---~lA----  464 (525)
                                     ....|.                     ...+-+ .+.+   ++. .+|+.-++..   .+.    
T Consensus       302 gGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~dp~vd~vlv~~~~~~~  381 (457)
T 2csu_A          302 AGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTF  381 (457)
T ss_dssp             CHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSEEEEEEECCCS
T ss_pred             CHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhcCCCCCEEEEEcccccc
Confidence                           000000                     000111 1221   233 4555567776   222    


Q ss_pred             --cC-hhHHHHHHHHhhhcCCCCcEEE-EEecCChHHHHHhhhhCCCCceeccCHHHHHHHhH
Q psy7785         465 --SD-LDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAANWFI  523 (525)
Q Consensus       465 --~s-~deAv~~~~aa~~~~~G~PVVl-Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  523 (525)
                        .+ .+.+...+++..++..+-|+|+ -+.|++.++++++|.++|+++  |+++++|+.++.
T Consensus       382 Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~~~~~~~~L~~~Gip~--~~spe~Av~al~  442 (457)
T 2csu_A          382 AGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIPT--YERPEDVASAAY  442 (457)
T ss_dssp             TTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTTTCCE--ESSHHHHHHHHH
T ss_pred             ccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcchHHHHHHHHhCCCCc--cCCHHHHHHHHH
Confidence              11 2223333344444212679887 788999999999999999877  899999998764

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*

Probab=98.41  E-value=2.6e-06  Score=88.09  Aligned_cols=85  Identities=13%  Similarity=0.142  Sum_probs=70.0

Q ss_pred             hCCCCCCCccccCCHH----HHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVCLEDAR----TATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~e----ea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~   94 (525)
                      ++|||+|++.++++.+    ++.++++++|| |||||+....+  +         -||.+..+.+++.+++++++..   
T Consensus       150 ~~Gip~p~~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~~ggs--s---------~Gv~~v~~~~el~~a~~~a~~~---  214 (364)
T 3i12_A          150 DAGLNIAPFITLTRTNRHAFSFAEVESRLGL-PLFVKPANQGS--S---------VGVSKVANEAQYQQAVALAFEF---  214 (364)
T ss_dssp             HTTCCBCCEEEEETTTGGGCCHHHHHHHHCS-SEEEEETTCCT--T---------TTCEEESSHHHHHHHHHHHHHH---
T ss_pred             HCCCCCCCEEEEEccccchhhHHHHHHhcCC-CEEEEECCCCC--C---------cCeEEeCCHHHHHHHHHHHHhc---
Confidence            7999999999999887    88888999997 99999973322  1         2778888999999998887531   


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                                -..++||+|+++ +|+.+++..|..
T Consensus       215 ----------~~~vlVEe~I~G-~E~~v~vl~~~~  238 (364)
T 3i12_A          215 ----------DHKVVVEQGIKG-REIECAVLGNDN  238 (364)
T ss_dssp             ----------CSEEEEEECCCS-EEEEEEEEESSS
T ss_pred             ----------CCcEEEEcCcCC-eEEEEEEEeCCC
Confidence                      257999999985 999999998864

>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A

Probab=98.40  E-value=7.6e-07  Score=94.64  Aligned_cols=91  Identities=18%  Similarity=0.198  Sum_probs=73.0

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.+++++++| |+|||+....+|  |         ||.+..+.+|+.+++++++....     
T Consensus       133 ~~gip~p~~~~~~~~~~~~~~~~~~~~-PvVvKp~~~~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~-----  195 (451)
T 2yrx_A          133 KYGIPTADHAAFTSYEEAKAYIEQKGA-PIVIKADGLAAG--K---------GVTVAQTVEEALAAAKAALVDGQ-----  195 (451)
T ss_dssp             HTTCCBCCEEEESCHHHHHHHHHHHCS-SEEEEECC------C---------CEEEESSHHHHHHHHHHHHHHSC-----
T ss_pred             HcCCCCCCeEEECCHHHHHHHHHhcCC-cEEEEeCCCCCC--C---------cEEEECCHHHHHHHHHHHHhccc-----
Confidence            799999999999999999999999997 999999765543  3         78888999999999988865321     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                        .|.....++||||++ +.|+.+.+.+|..
T Consensus       196 --~g~~~~~~lvEe~i~-G~E~sv~~~~dG~  223 (451)
T 2yrx_A          196 --FGTAGSQVVIEEYLE-GEEFSFMAFVNGE  223 (451)
T ss_dssp             --CBTTBCCEEEEECCC-SEEEEEEEEEETT
T ss_pred             --cCCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence              121235799999999 7899999998754

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*

Probab=98.39  E-value=8.4e-07  Score=104.18  Aligned_cols=94  Identities=15%  Similarity=0.234  Sum_probs=77.3

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++.++++.+|+.++++++|| |||||+....||  +         ||.+..|.+|+.+++++++...      
T Consensus       138 ~~Gipvp~~~~v~~~~ea~~~~~~ig~-PvVvKp~~~~Gg--~---------Gv~iv~~~eel~~~~~~~~~~~------  199 (1073)
T 1a9x_A          138 KIGLETARSGIAHTMEEALAVAADVGF-PCIIRPSFTMGG--S---------GGGIAYNREEFEEICARGLDLS------  199 (1073)
T ss_dssp             HTTCCCCSEEEESSHHHHHHHHHHHCS-SEEEEETTCCTT--T---------TCEEESSHHHHHHHHHHHHHHC------
T ss_pred             HCCcCCCCEEEECCHHHHHHHHHHcCC-CEEEEECCCCCC--C---------ceEEeCCHHHHHHHHHHHHhhC------
Confidence            799999999999999999999999997 999999755443  3         6778889999999998876431      


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEe
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVII  137 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~  137 (525)
                           ....++||+|+++.+|+.+.+.+|..  |.++.+
T Consensus       200 -----~~~~vlvEe~I~G~~E~~v~v~~d~~--g~~v~~  231 (1073)
T 1a9x_A          200 -----PTKELLIDESLIGWKEYEMEVVRDKN--DNCIIV  231 (1073)
T ss_dssp             -----TTSCEEEEECCTTSEEEEEEEEECTT--CCEEEE
T ss_pred             -----CCCcEEEEEccCCCeEEEEEEEEeCC--CCEEEE
Confidence                 13579999999988999999999964  444444

>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A

Probab=98.37  E-value=1e-06  Score=92.71  Aligned_cols=91  Identities=16%  Similarity=0.269  Sum_probs=74.5

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++++|| |+|+|+....+|  |         ||.+..|.+|+.+++++++....     
T Consensus       112 ~~gip~p~~~~~~~~~~~~~~~~~~~~-PvvvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~-----  174 (424)
T 2yw2_A          112 KYGIPTARYEVFTDFEKAKEYVEKVGA-PIVVKADGLAAG--K---------GAVVCETVEKAIETLDRFLNKKI-----  174 (424)
T ss_dssp             HTTCCBCCEEEESCHHHHHHHHHHHCS-SEEEEESSCCTT--C---------SEEEESSHHHHHHHHHHHHTSCT-----
T ss_pred             HcCCCCCCeEEECCHHHHHHHHHHcCC-cEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhhhh-----
Confidence            799999999999999999999999997 999999755443  3         78888999999999998865321     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                        .|.....++||+|++ +.|+.+.+..|..
T Consensus       175 --~g~~~~~~lvEe~i~-g~E~sv~~~~~G~  202 (424)
T 2yw2_A          175 --FGKSSERVVIEEFLE-GEEASYIVMINGD  202 (424)
T ss_dssp             --TGGGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred             --ccCCCCeEEEEECCC-CcEEEEEEEEcCC
Confidence              122235799999999 7899999998753

>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=98.35  E-value=1.2e-06  Score=92.88  Aligned_cols=99  Identities=15%  Similarity=0.278  Sum_probs=78.0

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+++.+++.++++++|| |+|||+....+|  +         ||.+..+.+++.++++++......  
T Consensus       124 ~~gip~p~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~~--  189 (451)
T 1ulz_A          124 KAGVPVVPGSDGVLKSLEEAKALAREIGY-PVLLKATAGGGG--R---------GIRICRNEEELVKNYEQASREAEK--  189 (451)
T ss_dssp             HTTCCBCCBCSSSCCCHHHHHHHHHHHCS-SEEEEECSSSSC--C---------SCEEESSHHHHHHHHHHHHHHHHH--
T ss_pred             HcCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEECCCCCC--c---------cEEEeCCHHHHHHHHHHHHHHHHH--
Confidence            7999999997  78999999999999997 999999765443  3         788888999999999888653110  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                      .   .+  -..++||+++++.+|+.+.+..|..  |.++.++
T Consensus       190 ~---~~--~~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~~~  224 (451)
T 1ulz_A          190 A---FG--RGDLLLEKFIENPKHIEYQVLGDKH--GNVIHLG  224 (451)
T ss_dssp             T---TS--CCCEEEEECCCSCEEEEEEEEECTT--SCEEEEE
T ss_pred             h---cC--CCeEEEEEcccCCeEEEEEEEEcCC--CCEEEEe
Confidence            0   11  2479999999977999999999864  4555544

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*

Probab=98.35  E-value=1.1e-06  Score=103.13  Aligned_cols=88  Identities=13%  Similarity=0.192  Sum_probs=67.0

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+|+.++++++|| |||||+....+|  +         ||.+..+.+++.++++++....      
T Consensus       684 ~~GIp~P~~~~~~s~eea~~~~~~ig~-PvvVKP~~~~gG--~---------Gv~iv~~~~el~~~~~~a~~~~------  745 (1073)
T 1a9x_A          684 RLKLKQPANATVTAIEMAVEKAKEIGY-PLVVRASYVLGG--R---------AMEIVYDEADLRRYFQTAVSVS------  745 (1073)
T ss_dssp             HHTCCCCCEEECCSHHHHHHHHHHHCS-SEEEEC------------------CEEEECSHHHHHHHHHHCC---------
T ss_pred             HcCcCCCCceEECCHHHHHHHHHHcCC-CEEEEECCCCCC--C---------CeEEECCHHHHHHHHHHHHhhC------
Confidence            799999999999999999999999997 999999766554  3         7888889999998888764210      


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                           ....++||+|+++.+|+.+.+..|+.
T Consensus       746 -----~~~~vlvEefI~g~~E~~V~~l~d~~  771 (1073)
T 1a9x_A          746 -----NDAPVLLDHFLDDAVEVDVDAICDGE  771 (1073)
T ss_dssp             ----------EEEBCCTTCEEEEEEEEECSS
T ss_pred             -----CCCcEEEEEccCCCcEEEEEEEEECC
Confidence                 12469999999977799999999874

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=98.34  E-value=1.3e-06  Score=90.71  Aligned_cols=91  Identities=11%  Similarity=0.146  Sum_probs=73.7

Q ss_pred             hhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          18 PVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        18 ~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      +++|||+|++..+++.+++.++++++|| |+|+|+....+|  +         ||.+..+.+++.++++++.....    
T Consensus       122 ~~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~----  185 (391)
T 1kjq_A          122 EELQLPTSTYRFADSESLFREAVADIGY-PCIVKPVMSSSG--K---------GQTFIRSAEQLAQAWKYAQQGGR----  185 (391)
T ss_dssp             TTSCCCBCCEEEESSHHHHHHHHHHHCS-SEEEEESCC-----C---------CCEEECSGGGHHHHHHHHHHHSG----
T ss_pred             HhCCCCCCCeeeeCCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CeEEECCHHHHHHHHHHHHhhcc----
Confidence            3689999999999999999999999997 999999754433  3         78888899999999998865321    


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                          + ....++||+|++.+.|+.+.+.+|..
T Consensus       186 ----~-~~~~~lvEe~i~~g~E~sv~~~~~~~  212 (391)
T 1kjq_A          186 ----A-GAGRVIVEGVVKFDFEITLLTVSAVD  212 (391)
T ss_dssp             ----G-GCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred             ----c-CCCCEEEEEecCCCeEEEEEEEEeCC
Confidence                1 12569999999988999999998854

>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}

Probab=98.32  E-value=1.8e-06  Score=91.95  Aligned_cols=97  Identities=15%  Similarity=0.228  Sum_probs=76.8

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+++.+++.++++++|| |+|||+....+|  +         ||.+..+.+++.++++++......  
T Consensus       130 ~~Gip~p~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~~--  195 (461)
T 2dzd_A          130 NAGIPVIPGSDGPVDGLEDVVAFAEAHGY-PIIIKAALGGGG--R---------GMRIVRSKSEVKEAFERAKSEAKA--  195 (461)
T ss_dssp             HTTCCBCCBCSSCCSSHHHHHHHHHHHCS-CEEEEESTTCSS--S---------SEEEECCGGGHHHHHHHHHHHHHH--
T ss_pred             HcCCCCCCCcccCcCCHHHHHHHHHhcCC-cEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHHHHHh--
Confidence            7999999997  78999999999999997 999999765443  3         788889999999999888653110  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEE
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVI  136 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~  136 (525)
                      .   .+  ...++||+++++.+|+.+.+..|..  |.++.
T Consensus       196 ~---~~--~~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~  228 (461)
T 2dzd_A          196 A---FG--SDEVYVEKLIENPKHIEVQILGDYE--GNIVH  228 (461)
T ss_dssp             H---TS--CCCEEEEECCCSCEEEEEEEEECTT--CCEEE
T ss_pred             h---cC--CCcEEEEECCCCCeEEEEEEEEcCC--CCEEE
Confidence            0   01  2569999999987999999999864  45543

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=98.32  E-value=1.5e-06  Score=92.25  Aligned_cols=91  Identities=15%  Similarity=0.227  Sum_probs=71.8

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCc-EEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKE-YVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~P-vVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+|++..+++.+++.++++++|| | +|||+....+|  |         ||.+..+.+|+.+++++++....    
T Consensus       138 ~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvvKp~~~~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~----  201 (452)
T 2qk4_A          138 RHGIPTAQWKAFTKPEEACSFILSADF-PALVVKASGLAAG--K---------GVIVAKSKEEACKAVQEIMQEKA----  201 (452)
T ss_dssp             HTTCCBCCEEEESSHHHHHHHHHHCSS-CEEEEEESBC-----C---------CEEECSSHHHHHHHHHHHTTC------
T ss_pred             HCCCCCCCeEEECCHHHHHHHHHhCCC-CeEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHhhhh----
Confidence            799999999999999999999999997 9 99999755443  3         78888899999999998865321    


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                         .|.....++||||++ +.|+.+.+..|+.
T Consensus       202 ---~g~~~~~~lvEe~i~-G~E~sv~~~~dG~  229 (452)
T 2qk4_A          202 ---FGAAGETIVIEELLD-GEEVSCLCFTDGK  229 (452)
T ss_dssp             --------CCEEEEECCC-SEEEEEEEEECSS
T ss_pred             ---ccCCCCeEEEEECCC-CCeEEEEEEECCC
Confidence               121135799999999 7999999998754

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=98.30  E-value=1.7e-06  Score=90.00  Aligned_cols=91  Identities=12%  Similarity=0.284  Sum_probs=75.3

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+|++..+++.+++.++++++|| |+|||+.... +  ||         ||.+..+.+++.++++.+..       
T Consensus       120 ~~Gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~gg~~--g~---------Gv~~v~~~~el~~a~~~~~~-------  180 (377)
T 3orq_A          120 SAGTKVVPFISVKESTDIDKAIETLGY-PFIVKTRFGGYD--GK---------GQVLINNEKDLQEGFKLIET-------  180 (377)
T ss_dssp             HTTCCBCCEEEECSSTHHHHHHHHTCS-SEEEEESSSCCT--TT---------TEEEECSTTSHHHHHHHHTT-------
T ss_pred             HCCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEeCCCCCC--CC---------CeEEECCHHHHHHHHHhcCC-------
Confidence            799999999999999999999999997 9999996432 2  34         78888899999988887631       


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                              ..++||+|+++..|+.+.+.+|..  |.+..++
T Consensus       181 --------~~~ivEe~i~g~~E~sv~~~~~~~--g~~~~~~  211 (377)
T 3orq_A          181 --------SECVAEKYLNIKKEVSLTVTRGNN--NQITFFP  211 (377)
T ss_dssp             --------SCEEEEECCCEEEEEEEEEEECGG--GCEEECC
T ss_pred             --------CcEEEEccCCCCEEEEEEEEEeCC--CCEEEEC
Confidence                    458999999977999999998864  4556655

>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}

Probab=98.30  E-value=1.4e-06  Score=92.49  Aligned_cols=99  Identities=19%  Similarity=0.266  Sum_probs=77.4

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+++.+++.++++++|| |+|||+....+|  +         ||.+..+.+++.++++++....... 
T Consensus       124 ~~gip~p~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~~~-  190 (451)
T 2vpq_A          124 KANVPVVPGSDGLMKDVSEAKKIAKKIGY-PVIIKATAGGGG--K---------GIRVARDEKELETGFRMTEQEAQTA-  190 (451)
T ss_dssp             HTTCCBCSBCSSCBSCHHHHHHHHHHHCS-SEEEEETTCCTT--C---------SEEEESSHHHHHHHHHHHHHHHHHH-
T ss_pred             HcCCCcCCCcccCcCCHHHHHHHHHhcCC-cEEEEECCCCCC--C---------CEEEeCCHHHHHHHHHHHHHHHHhh-
Confidence            7999999977  88999999999999997 999999755443  3         7888889999999998886431100 


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                          .+  ...++||+|+++.+|+.+.+..|..  |.++.++
T Consensus       191 ----~~--~~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~~~  224 (451)
T 2vpq_A          191 ----FG--NGGLYMEKFIENFRHIEIQIVGDSY--GNVIHLG  224 (451)
T ss_dssp             ----HS--CCCEEEEECCCSEEEEEEEEEECTT--SCEEEEE
T ss_pred             ----cC--CCcEEEEEecCCCeEEEEEEEEcCC--CCEEEEe
Confidence                01  2569999999977899999999864  4565554

>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}

Probab=98.30  E-value=1.2e-06  Score=91.92  Aligned_cols=87  Identities=16%  Similarity=0.233  Sum_probs=72.5

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++++|| |+|+|+....+|  |         ||.+..+.+|+.+++++++....     
T Consensus       111 ~~gip~p~~~~~~~~~~~~~~~~~~~~-P~vvKp~~~~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~-----  173 (417)
T 2ip4_A          111 RYGIPTARYRVFREPLEALAYLEEVGV-PVVVKDSGLAAG--K---------GVTVAFDLHQAKQAVANILNRAE-----  173 (417)
T ss_dssp             HTCCCBCCEEEESSHHHHHHHHHHHCS-SEEEECTTSCSS--T---------TCEEESCHHHHHHHHHHHTTSSS-----
T ss_pred             HcCCCCCCeeeeCCHHHHHHHHHHcCC-CEEEEECCCCCC--C---------CEEEeCCHHHHHHHHHHHHhhcc-----
Confidence            799999999999999999999999997 999999654432  3         78888899999999988863211     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                         +   ..++||||++ +.|+.+.+..|..
T Consensus       174 ---~---~~~lvEe~i~-g~E~sv~~~~~G~  197 (417)
T 2ip4_A          174 ---G---GEVVVEEYLE-GEEATVLALTDGE  197 (417)
T ss_dssp             ---C---CCEEEEECCC-SCEEEEEEEESSS
T ss_pred             ---C---CeEEEEECcc-CcEEEEEEEEeCC
Confidence               1   5699999999 7899999998754

>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A

Probab=98.29  E-value=2.2e-06  Score=93.70  Aligned_cols=94  Identities=15%  Similarity=0.187  Sum_probs=76.2

Q ss_pred             hCCCCCCCcccc--------------------------CCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceE
Q psy7785          19 VSTVHSTDKVCL--------------------------EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGV   72 (525)
Q Consensus        19 ~~GIpvp~~~~~--------------------------~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV   72 (525)
                      ++|||+|++..+                          ++.+++.++++++|| |||||+....+|  |         ||
T Consensus       183 ~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~-PvVvKp~~g~gg--~---------Gv  250 (554)
T 1w96_A          183 SAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGF-PVMIKASEGGGG--K---------GI  250 (554)
T ss_dssp             HTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCS-SEEEEETTCCTT--T---------TE
T ss_pred             HCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCC-CEEEEECCCCCC--c---------eE
Confidence            799999998775                          789999999999997 999999755443  3         78


Q ss_pred             EEeCCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEe
Q psy7785          73 HFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVII  137 (525)
Q Consensus        73 ~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~  137 (525)
                      .+..+.+|+.++++++.....           ...++||+++++++|+.+.+..|..  |.++.+
T Consensus       251 ~~v~~~~el~~a~~~~~~~~~-----------~~~vlvEe~i~g~~e~sv~vl~d~~--G~vv~l  302 (554)
T 1w96_A          251 RQVEREEDFIALYHQAANEIP-----------GSPIFIMKLAGRARHLEVQLLADQY--GTNISL  302 (554)
T ss_dssp             EEECSHHHHHHHHHHHHHHST-----------TCCEEEEECCCSCEEEEEEEEECTT--SCEEEE
T ss_pred             EEECCHHHHHHHHHHHHhhcc-----------CCCEEEEEecCCCcEEEEEEEEcCC--CCEEEE
Confidence            888899999999988864311           2469999999988999999999863  455543

>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}

Probab=98.23  E-value=6.2e-06  Score=88.44  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=73.8

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++++|| |||||+..-.+|  +         ||.+..+.+|+.++++++......  ..
T Consensus       149 ~~GIpvp~~~~v~s~ee~~~~~~~lg~-PvVVKP~~g~gg--~---------Gv~iv~~~eel~~a~~~~~~~~~~--~~  214 (474)
T 3vmm_A          149 KAGVKSIKNKRVTTLEDFRAALEEIGT-PLILKPTYLASS--I---------GVTLITDTETAEDEFNRVNDYLKS--IN  214 (474)
T ss_dssp             HTTSCCCCEEEECSHHHHHHHHHHSCS-SEEEEESSCCTT--T---------TCEEECCTTSHHHHHHHHHHHHTT--SC
T ss_pred             HcCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEECCCCcC--c---------eEEEECCHHHHHHHHHHHHHHHhh--cc
Confidence            799999999999999999999999997 999999654433  3         677888999999999887653210  00


Q ss_pred             CCCC-cccCeEEEEeeeCCce-----------eEEE-EEEEcCCCCccEEEe
Q psy7785          99 PKTG-INVNKVMVAKSVNITR-----------ETYF-CIVQDRLHNGPVVII  137 (525)
Q Consensus        99 ~~~g-~~~~~vlVee~~~~~~-----------E~~v-gv~~D~~f~gpvi~~  137 (525)
                      .+.. .....++||+|+++.+           |+.+ ++..|..+ .++.+.
T Consensus       215 ~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~-~~v~i~  265 (474)
T 3vmm_A          215 VPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEY-FPIAIH  265 (474)
T ss_dssp             CCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEE-EEEEEE
T ss_pred             ccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeE-EEEEEE
Confidence            0000 0126799999998543           2655 46677765 344443

>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...

Probab=98.23  E-value=1.6e-06  Score=91.83  Aligned_cols=99  Identities=16%  Similarity=0.193  Sum_probs=76.7

Q ss_pred             hCCCCCCCcc--ccCCHHHH-HHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTA-TNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea-~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~   95 (525)
                      ++|||+|++.  .+++.+++ .++++++|| |+|||+....+|  +         ||.+..+.+++.+++++++..... 
T Consensus       125 ~~gip~p~~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~~-  191 (449)
T 2w70_A          125 KAGVPCVPGSDGPLGDDMDKNRAIAKRIGY-PVIIKASGGGGG--R---------GMRVVRGDAELAQSISMTRAEAKA-  191 (449)
T ss_dssp             HHTCCBCSBCSSCCCSCHHHHHHHHHHHCS-SEEEEETTCCTT--T---------TCEEECSHHHHHHHHHHHHHHHHH-
T ss_pred             HcCCCcCCCcccccCCHHHHHHHHHHHhCC-cEEEEECCCCCC--C---------CEEEeCCHHHHHHHHHHHHHHHHh-
Confidence            7999999997  88999999 999999997 999999755443  3         788888999999998887642110 


Q ss_pred             ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                       .   .+  ...++||+++++++|+.+.+..|..  |.++.++
T Consensus       192 -~---~~--~~~~lvEe~i~g~~e~~v~~~~~~~--G~~~~~~  226 (449)
T 2w70_A          192 -A---FS--NDMVYMEKYLENPRHVEIQVLADGQ--GNAIYLA  226 (449)
T ss_dssp             -H---HS--CCCEEEEECCSSCEEEEEEEEECTT--SCEEEEE
T ss_pred             -h---cC--CCcEEEEeccCCCeEEEEEEEEcCC--CCEEEEe
Confidence             0   01  2469999999977999999999864  4555444

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=98.22  E-value=7.5e-07  Score=104.82  Aligned_cols=99  Identities=12%  Similarity=0.219  Sum_probs=73.1

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+++.+++.++++++|| |||||+..-.+|  +         ||.+..+.+++.++++++.....   
T Consensus       128 ~aGIPvpp~~~~~v~s~eea~~~a~~iGy-PvVVKP~~GgGg--~---------Gv~vv~s~eeL~~a~~~a~~~a~---  192 (1150)
T 3hbl_A          128 KADLPVIPGTDGPIKSYELAKEFAEEAGF-PLMIKATSGGGG--K---------GMRIVREESELEDAFHRAKSEAE---  192 (1150)
T ss_dssp             HTTCCBCCBCSSCBCSSSTTTTTGGGTCS-SEEEECCC------------------CEECCSSSCTHHHHSSSSSCC---
T ss_pred             HcCcCCCCccccCCCCHHHHHHHHHHcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHHHHH---
Confidence            7999999998  78999999999999997 999999754443  3         78888899999988887754321   


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                          .......++||+|+++.+|+.+.+..|..  |.++.++
T Consensus       193 ----~~fg~~~vlVEeyI~G~reieV~vl~d~~--G~vv~l~  228 (1150)
T 3hbl_A          193 ----KSFGNSEVYIERYIDNPKHIEVQVIGDEH--GNIVHLF  228 (1150)
T ss_dssp             ----------CBEEECCCSSCEEEEEEEEECSS--SCEEEEE
T ss_pred             ----hhcCCCcEEEEEccCCCcEEEEEEEEeCC--CCEEEEE
Confidence                00112579999999987999999999974  5666654

>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}

Probab=98.21  E-value=6.6e-06  Score=84.33  Aligned_cols=82  Identities=12%  Similarity=0.141  Sum_probs=65.5

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++.++++.+  ..+++++|| |||||+....++  +         ||.+..+.+++.++++++...       
T Consensus       142 ~~Gip~p~~~~~~~~~--~~~~~~lg~-PvvvKP~~~~~s--~---------Gv~~v~~~~el~~a~~~~~~~-------  200 (346)
T 3se7_A          142 SAGIATPNFWTVTADE--KIPTDQLTY-PVFVKPARSGSS--F---------GVSKVAREEDLQGAVEAAREY-------  200 (346)
T ss_dssp             HTTCBCCCEEEEETTS--CCCTTTCCS-SEEEEESSCCTT--T---------TCEEECSHHHHHHHHHHHTTT-------
T ss_pred             HcCcCcCCEEEEcCcH--HHHHHhcCC-CEEEEeCCCCCC--c---------CEEEECCHHHHHHHHHHHHhC-------
Confidence            7999999999998866  345678897 999999644322  2         677888999999888886431       


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                            -..++||+|++ ++|+.+++..|.
T Consensus       201 ------~~~vlvEe~I~-G~E~~v~vl~~~  223 (346)
T 3se7_A          201 ------DSKVLIEEAVI-GTEIGCAVMGNG  223 (346)
T ss_dssp             ------CSEEEEEECCC-SEEEEEEEEEET
T ss_pred             ------CCcEEEEeCcC-CEEEEEEEEecC
Confidence                  25799999999 799999999885

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=98.19  E-value=2.8e-06  Score=89.54  Aligned_cols=90  Identities=17%  Similarity=0.224  Sum_probs=67.2

Q ss_pred             hhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          18 PVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        18 ~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      +++|||+|++..+++.+++.++++++|| |+|+|+....+|  +         ||.+..+.+++.++++++.....    
T Consensus       130 ~~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~----  193 (433)
T 2dwc_A          130 KEAKVPTSRYMYATTLDELYEACEKIGY-PCHTKAIMSSSG--K---------GSYFVKGPEDIPKAWEEAKTKAR----  193 (433)
T ss_dssp             HTSCCCCCCEEEESSHHHHHHHHHHHCS-SEEEEECCC-----------------EEECSGGGHHHHHHC----------
T ss_pred             HhcCCCCCCeeEeCCHHHHHHHHHhcCC-CEEEEECCCcCC--C---------CeEEECCHHHHHHHHHHHHhhcc----
Confidence            3689999999999999999999999997 999999754433  3         78888899999999887754311    


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                          + ....++||+|++.+.|+.+.+.+|.
T Consensus       194 ----~-~~~~~lvEe~i~~g~E~sv~~~~~~  219 (433)
T 2dwc_A          194 ----G-SAEKIIVEEHIDFDVEVTELAVRHF  219 (433)
T ss_dssp             --------CCEEEEECCCCSEEEEECCEEEE
T ss_pred             ----c-CCCCEEEEccCCCCeeEEEEEEecc
Confidence                1 1256999999988899999998864

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*

Probab=98.19  E-value=3e-05  Score=77.13  Aligned_cols=84  Identities=14%  Similarity=0.135  Sum_probs=66.5

Q ss_pred             hCCCCCCCccccCCHHHHHH--------HHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhc
Q psy7785          19 VSTVHSTDKVCLEDARTATN--------ILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG   90 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~--------~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~   90 (525)
                      ++|||+|++..+++. ++.+        +++++|| |+|+|+....+|  +         ||.+..+.+++.++++++..
T Consensus       106 ~~gi~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~-p~vvKP~~g~~~--~---------gv~~v~~~~el~~~~~~~~~  172 (306)
T 1iow_A          106 GAGLPVAPWVALTRA-EFEKGLSDKQLAEISALGL-PVIVKPSREGSS--V---------GMSKVVAENALQDALRLAFQ  172 (306)
T ss_dssp             HTTCCBCCEEEEEHH-HHHHCCCTHHHHHHHTTCS-SEEEEETTCCTT--T---------TCEEESSGGGHHHHHHHHTT
T ss_pred             HCCCCCCCeEEEchh-hhhccchhhhhhHHhccCC-CEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHh
Confidence            799999999999887 7766        7788997 999999644332  2         78888899999988887642


Q ss_pred             cccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          91 HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        91 ~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                      .             ...++||++++ +.|+.+.+. +..+
T Consensus       173 ~-------------~~~~lvee~i~-g~e~~v~~~-~g~~  197 (306)
T 1iow_A          173 H-------------DEEVLIEKWLS-GPEFTVAIL-GEEI  197 (306)
T ss_dssp             T-------------CSEEEEEECCC-CCEEEEEEE-TTEE
T ss_pred             h-------------CCCEEEEeCcC-CEEEEEEEE-CCCc
Confidence            1             25799999998 799999998 4344

>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*

Probab=98.17  E-value=4.8e-06  Score=86.02  Aligned_cols=87  Identities=14%  Similarity=0.154  Sum_probs=68.7

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeec-cccCCCCCccCCCcceEEEeCC--cccHHHHHHHHhcccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQIL-AGGRGLGHFDNGFKSGVHFTNN--VQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~-~~~rgK~~~~~~~~GGV~l~~~--~eea~~a~~~l~~~~~~~   95 (525)
                      ++|||+|++..+++.+++.++++++|| |+|||+... .+  ||         ||.+..+  .+|+.+++       +  
T Consensus        89 ~~GIptp~~~~v~~~~e~~~~~~~~G~-P~VvKp~~~G~~--Gk---------Gv~~v~~~~~~el~~a~-------~--  147 (355)
T 3eth_A           89 KLHLPTAPWQLLAERSEWPAVFDRLGE-LAIVKRRTGGYD--GR---------GQWRLRANETEQLPAEC-------Y--  147 (355)
T ss_dssp             HTTCCBCCEEEECCGGGHHHHHHHHCS-EEEEEESSSCCT--TT---------TEEEEETTCGGGSCGGG-------T--
T ss_pred             HCccCCCCEEEECCHHHHHHHHHHcCC-CEEEEecCCCCC--CC---------eEEEEcCCCHHHHHHHh-------h--
Confidence            799999999999999999999999997 999999643 22  34         6777777  87766521       1  


Q ss_pred             ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                            +    .++||+|++.++|+.+.+.+|..  |-+..+.
T Consensus       148 ------~----~vivEe~I~~~~Eisv~v~~~~~--G~~~~~p  178 (355)
T 3eth_A          148 ------G----ECIVEQGINFSGEVSLVGARGFD--GSTVFYP  178 (355)
T ss_dssp             ------T----TEEEEECCCCSEEEEEEEEECTT--SCEEECC
T ss_pred             ------C----CEEEEEccCCCcEEEEEEEEcCC--CCEEEEC
Confidence                  2    48999999989999999999875  3444443

>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1

Probab=98.15  E-value=4.5e-06  Score=86.70  Aligned_cols=86  Identities=17%  Similarity=0.242  Sum_probs=68.9

Q ss_pred             hCCCCCCCccccCCHHH----HHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVCLEDART----ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~ee----a~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~   94 (525)
                      ++|||+|++.++++.++    +.++++++|| |||||+....+|  +         ||.+..+.+++.+++++.+..   
T Consensus       145 ~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~-PvvVKP~~~~~s--~---------Gv~~v~~~~el~~a~~~~~~~---  209 (377)
T 1ehi_A          145 VNGIRNTKYIVVDPESANNWSWDKIVAELGN-IVFVKAANQGSS--V---------GISRVTNAEEYTEALSDSFQY---  209 (377)
T ss_dssp             TTTCCCCCEEEECTTGGGGCCHHHHHHHHCS-CEEEEESSCCTT--T---------TEEEECSHHHHHHHHHHHTTT---
T ss_pred             HcCCCCCCEEEEeccccchHHHHHHHHhcCC-CEEEEeCCCCCC--c---------CEEEeCCHHHHHHHHHHHHhc---
Confidence            79999999999988765    6677888997 999999754332  2         788888999999888876421   


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                                -..++||+++++.+|+.+++..|..
T Consensus       210 ----------~~~vlvEe~I~G~~E~~v~vl~~~~  234 (377)
T 1ehi_A          210 ----------DYKVLIEEAVNGARELEVGVIGNDQ  234 (377)
T ss_dssp             ----------CSCEEEEECCCCSCEEEEEEEESSS
T ss_pred             ----------CCcEEEEcCCCCCceEEEEEEcCCC
Confidence                      1469999999855999999998863

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}

Probab=98.12  E-value=3.7e-06  Score=87.63  Aligned_cols=85  Identities=13%  Similarity=0.151  Sum_probs=68.6

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.++++++|| |+|+|+....+|  +         ||.+..+.+++.++++++.....     
T Consensus       119 ~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~-----  181 (403)
T 4dim_A          119 KYNVNTARHFVVRNENELKNALENLKL-PVIVKATDLQGS--K---------GIYIAKKEEEAIDGFNETMNLTK-----  181 (403)
T ss_dssp             HHTCCCCCEECCCSHHHHHHHHHTSCS-SEEEECSCC----------------CEEESSHHHHHHHHHHHHHHCS-----
T ss_pred             HcCCCCCCEEEeCCHHHHHHHHhcCCC-CEEEEECCCCCC--C---------CEEEECCHHHHHHHHHHHHhcCc-----
Confidence            789999999999999999999999997 999999654443  3         78888999999999998865311     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQD  127 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D  127 (525)
                            ...++||+|++ +.|+.+.+..+
T Consensus       182 ------~~~~lvEe~i~-g~e~sv~~~~~  203 (403)
T 4dim_A          182 ------RDYCIVEEFIE-GYEFGAQAFVY  203 (403)
T ss_dssp             ------SSCCEEEECCC-SEEEEEEEEEE
T ss_pred             ------CCcEEEEEccC-CcEEEEEEEEE
Confidence                  24689999998 58999988763

>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*

Probab=98.08  E-value=3e-06  Score=84.85  Aligned_cols=83  Identities=18%  Similarity=0.278  Sum_probs=65.5

Q ss_pred             hCCCCCCCccccCCHHHHHH-HHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATN-ILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~-~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+|++.++++.+++.. +++++|| |+|+|+....+|  +         ||.+..+.+++.+++++++..      
T Consensus       107 ~~Gip~p~~~~~~~~~~~~~~~~~~~~~-P~vvKP~~~~~s--~---------Gv~~v~~~~el~~~~~~~~~~------  168 (307)
T 3r5x_A          107 YEGIETPDWIELTKMEDLNFDELDKLGF-PLVVKPNSGGSS--V---------GVKIVYDKDELISMLETVFEW------  168 (307)
T ss_dssp             HTTCCCCCEEEEESSSCCCHHHHHHHCS-SEEEEECC------C---------CCEEECSHHHHHHHHHHHHHH------
T ss_pred             HCCCCCCCEEEEeChhhhhHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHhc------
Confidence            79999999999988777654 7788997 999999755433  2         788888999999998887532      


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQD  127 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D  127 (525)
                             ...++||+|++ +.|+.+.+..+
T Consensus       169 -------~~~~lvee~i~-G~e~~v~v~~g  190 (307)
T 3r5x_A          169 -------DSEVVIEKYIK-GEEITCSIFDG  190 (307)
T ss_dssp             -------CSEEEEEECCC-SEEEEEEEETT
T ss_pred             -------CCCEEEECCcC-CEEEEEEEECC
Confidence                   24799999999 69999999644

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=98.05  E-value=1.9e-06  Score=96.45  Aligned_cols=99  Identities=20%  Similarity=0.264  Sum_probs=27.6

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+++.+++.++++++|| |||||+..-.+|  |         ||.+..+.+++.++++++......  
T Consensus       125 ~~GVPvpp~~~~~~~s~~e~~~~a~~igy-PvVvKp~~gggg--k---------Gv~iv~~~~el~~a~~~~~~ea~~--  190 (681)
T 3n6r_A          125 EANVSTVPGYMGLIEDADEAVKISNQIGY-PVMIKASAGGGG--K---------GMRIAWNDQEAREGFQSSKNEAAN--  190 (681)
T ss_dssp             TTTCCCCCC-----------------------------------------------------------------------
T ss_pred             HcCcCcCCccccCcCCHHHHHHHHHhcCC-cEEEEECCCCCC--C---------CEEEECCHHHHHHHHHHHHHHHHH--
Confidence            7999999985  78899999999999997 999999754333  3         788888999999998887653220  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                         ..|  ...++||+|+++.+|+.+.+..|..  |.++.++
T Consensus       191 ---~fg--~~~vlvEe~I~g~rei~V~v~~d~~--G~vv~l~  225 (681)
T 3n6r_A          191 ---SFG--DDRIFIEKFVTQPRHIEIQVLCDSH--GNGIYLG  225 (681)
T ss_dssp             -----------------CCSCEEEEEEEECCSS--SCCEEEE
T ss_pred             ---hCC--CCcEEEEeccCCCcEEEEEEEEeCC--CCEEEEe
Confidence               011  2579999999987999999999974  5677766

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}

Probab=98.04  E-value=9.1e-06  Score=84.77  Aligned_cols=84  Identities=15%  Similarity=0.280  Sum_probs=66.3

Q ss_pred             hCC-CCCCCccccCCH----HHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccc
Q psy7785          19 VST-VHSTDKVCLEDA----RTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL   93 (525)
Q Consensus        19 ~~G-Ipvp~~~~~~~~----eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~   93 (525)
                      ++| ||+|++.++++.    +++.++++++|| |||||+....++  +         ||.+..+.+|+.+++++.+..  
T Consensus       171 ~~G~Ipvp~~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~~ggss--~---------GV~~v~~~~el~~al~~a~~~--  236 (383)
T 3k3p_A          171 SATTIPQVAYVALIEGEPLESKLAEVEEKLIY-PVFVKPANMGSS--V---------GISKAENRTDLKQAIALALKY--  236 (383)
T ss_dssp             HHCCCCBCCEEEEETTSCHHHHHHHHHHHCCS-SEEEEECC-----------------CEEESSHHHHHHHHHHHHHH--
T ss_pred             hCCCcCCCCEEEEeCccchhHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhC--
Confidence            789 999999999876    577788899997 999999644322  2         788888999999998887531  


Q ss_pred             ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                                 -..++||++++ ++|+.+++..|.
T Consensus       237 -----------~~~vlVEe~I~-G~E~~v~vl~d~  259 (383)
T 3k3p_A          237 -----------DSRVLIEQGVD-AREIEVGILGNT  259 (383)
T ss_dssp             -----------CSEEEEEECCC-SEEEEEEEEESS
T ss_pred             -----------CCeEEEEcCCC-CeEEEEEEEeCC
Confidence                       24799999998 799999999874

>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}

Probab=98.04  E-value=5.7e-05  Score=77.73  Aligned_cols=85  Identities=15%  Similarity=0.200  Sum_probs=65.2

Q ss_pred             hCCCCCCCccccCCHHH---HHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785          19 VSTVHSTDKVCLEDART---ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~ee---a~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~   95 (525)
                      +.|||+|++..+++.++   ..++++++|| |||||+....+  +         -||.+..+.+++.+++++....    
T Consensus       149 ~~Gip~p~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~~gg~--s---------~Gv~~v~~~~el~~~~~~a~~~----  212 (357)
T 4fu0_A          149 LAGISVPKSVTFKRFNEEAAMKEIEANLTY-PLFIKPVRAGS--S---------FGITKVIEKQELDAAIELAFEH----  212 (357)
T ss_dssp             HTTCBCCCEEEEEGGGHHHHHHHHHHHCCS-SEEEEETTCSS--S---------TTCEEESSHHHHHHHHHHHTTT----
T ss_pred             HCCCCCCCEEeecCCChHHHHHHHHHhcCC-CEEEEECCCCC--C---------CceEEeccHHhHHHHHHHHhcc----
Confidence            79999999998875443   3567789997 99999953322  2         2788888999999888775321    


Q ss_pred             ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                               -..++||++++ ++|+.+++..|..
T Consensus       213 ---------~~~vlvE~~i~-G~e~~v~vl~~~~  236 (357)
T 4fu0_A          213 ---------DTEVIVEETIN-GFEVGCAVLGIDE  236 (357)
T ss_dssp             ---------CSEEEEEECCC-SEEEEEEEEESSS
T ss_pred             ---------CCeEEEEEecC-CEEEEEEEEecCC
Confidence                     25799999997 7999999998754

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.01  E-value=4.7e-06  Score=98.34  Aligned_cols=98  Identities=18%  Similarity=0.235  Sum_probs=26.2

Q ss_pred             hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.  .+++.+++.++++++|| |||||+....+|  +         ||.+..+.+|+.++++++......  
T Consensus       144 ~~GIPvp~~~~~~v~s~eea~~~a~~igy-PvVVKp~~g~GG--~---------Gv~iv~s~eEL~~a~~~~~~~a~~--  209 (1165)
T 2qf7_A          144 SVGVPVVPATEPLPDDMAEVAKMAAAIGY-PVMLKASWGGGG--R---------GMRVIRSEADLAKEVTEAKREAMA--  209 (1165)
T ss_dssp             HTTCCBC-------------------------------------------------------------------------
T ss_pred             HcCCCCCCeeCcCCCCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHHHHHh--
Confidence            7999999998  68899999999999997 999999765543  3         788888999999888887643210  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEe
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVII  137 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~  137 (525)
                         ..+  ...++||+|+++++|+.+.+..|..  |.++.+
T Consensus       210 ---~fg--~~~vlVEefI~gg~EisV~vl~D~~--G~vv~l  243 (1165)
T 2qf7_A          210 ---AFG--KDEVYLEKLVERARHVESQILGDTH--GNVVHL  243 (1165)
T ss_dssp             ---------------CCCSSEEEEEEEEEECTT--SCEEEE
T ss_pred             ---hcC--CCcEEEEEeccCCcEEEEEEEEcCC--CcEEEE
Confidence               011  2569999999988999999999975  455543

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=97.98  E-value=6e-06  Score=97.63  Aligned_cols=99  Identities=20%  Similarity=0.306  Sum_probs=24.6

Q ss_pred             hCCCCCCCc-cccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDK-VCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~-~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+|++ .++++.+++.++++++|| |||||+....+|  |         ||.+..+.+|+.++++++......   
T Consensus       154 ~aGIPvpp~~~~v~s~eea~~~a~~iGy-PvVVKP~~GgGG--k---------GV~iv~s~eEL~~a~~~~~~~a~~---  218 (1236)
T 3va7_A          154 RAKVPLVPGSGLIKDAKEAKEVAKKLEY-PVMVKSTAGGGG--I---------GLQKVDSEDDIERVFETVQHQGKS---  218 (1236)
T ss_dssp             HTTCCCCC------------------------------------------------------------------------
T ss_pred             HcCCCCCCeeEecCCHHHHHHHHHHcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHHHHHh---
Confidence            799999884 788999999999999997 999999755443  3         788888999999998887643210   


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                          ......++||+|+++.+|+.+.+..|..  |.++.++
T Consensus       219 ----~~~~~~vlVEeyI~G~rEisV~vl~Dg~--g~vv~l~  253 (1236)
T 3va7_A          219 ----YFGDAGVFMERFVNNARHVEIQMMGDGF--GKAIAIG  253 (1236)
T ss_dssp             ------------------CCEEEEEEEEEESS--SCEEEEE
T ss_pred             ----ccCCCcEEEeeccCCCeEEEEEEEecCC--ceEEEEe
Confidence                0112569999999978999999999975  4677765

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}

Probab=97.97  E-value=7.4e-06  Score=92.37  Aligned_cols=85  Identities=22%  Similarity=0.201  Sum_probs=68.1

Q ss_pred             hCCCCCCCccccCCHHHHHHHH-HhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe----CCcccHHHHHHHHhcccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNIL-KDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT----NNVQDIPPILEKMIGHKL   93 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a-~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~----~~~eea~~a~~~l~~~~~   93 (525)
                      ++|||||++.++++.+++.+++ +++|| |||||+....+  ||         ||.+.    .+.+++.++++.....  
T Consensus       499 ~~GIPvP~~~~~~~~~ea~~~~~~~~g~-PvVVKP~~g~~--G~---------GV~iv~~~v~~~eel~~al~~a~~~--  564 (757)
T 3ln7_A          499 KAGFNVPQSVEFTSLEKAVASYALFENR-AVVIKPKSTNY--GL---------GITIFQQGVQNREDFAKALEIAFRE--  564 (757)
T ss_dssp             HHTCCCCCEEEESCHHHHHHGGGGSSSS-CEEEEESSCST--TT---------TCEECSSCCCCHHHHHHHHHHHHHH--
T ss_pred             HCCcCCCCEEEECCHHHHHHHHHHhcCC-CEEEEeCCCCC--CC---------CeEEecCCCCCHHHHHHHHHHHHhc--
Confidence            7999999999999999997777 78897 99999975543  34         78777    6888999888876421  


Q ss_pred             ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                                 ...++||+|++ ++|+.+.+..|..
T Consensus       565 -----------~~~vlVEefI~-G~Ei~v~Vlggkv  588 (757)
T 3ln7_A          565 -----------DKEVMVEDYLV-GTEYRFFVLGDET  588 (757)
T ss_dssp             -----------CSSEEEEECCC-SEEEEEEEETTEE
T ss_pred             -----------CCcEEEEEcCC-CcEEEEEEECCEE
Confidence                       14599999998 6999999875533

>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}

Probab=97.96  E-value=1.4e-05  Score=82.92  Aligned_cols=84  Identities=12%  Similarity=0.152  Sum_probs=64.8

Q ss_pred             hCCCCCCCccccCCHHH----HHHHHHhcCCCc-EEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccc
Q psy7785          19 VSTVHSTDKVCLEDART----ATNILKDLNFKE-YVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL   93 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~ee----a~~~a~~lg~~P-vVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~   93 (525)
                      ++|||+|++.++++.++    ...+++++|| | ||||+....++           -||.+..+.+|+.+++++.+..  
T Consensus       150 ~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg~-P~vvVKP~~ggss-----------~Gv~~v~~~~eL~~a~~~a~~~--  215 (372)
T 3tqt_A          150 AGGIPVVDWHTLSPRDATEGVYQRLLDRWGT-SELFVKAVSLGSS-----------VATLPVKTETEFTKAVKEVFRY--  215 (372)
T ss_dssp             HTTCCBCCCEEECTTSCCTTHHHHHHHHC----CEEEEESSCCSG-----------GGEEEECSHHHHHHHHHHHTTT--
T ss_pred             HCCcCCCCEEEEechhhhhhHHHHHHHhcCC-CeEEEEECCCCCC-----------CCEEEECCHHHHHHHHHHHHhc--
Confidence            79999999999987764    4567889997 9 99999644221           2788889999999888876421  


Q ss_pred             ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                                 -..++||++++ ++|+.+++..|.
T Consensus       216 -----------~~~vlVEe~I~-G~E~~v~vl~~~  238 (372)
T 3tqt_A          216 -----------DDRLMVEPRIR-GREIECAVLGNG  238 (372)
T ss_dssp             -----------CSCEEEEECCC-SEEEEEEEEESS
T ss_pred             -----------CCCEEEECCCC-CEEEEEEEEeCC
Confidence                       24699999998 799999999886

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}

Probab=97.92  E-value=1.4e-05  Score=82.91  Aligned_cols=85  Identities=15%  Similarity=0.188  Sum_probs=67.5

Q ss_pred             hCCCCCCCccccCCHHH--HHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVCLEDART--ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~ee--a~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.++++.++  +....+++|| |||||+....++  +         ||.+..+.+|+.+++++....     
T Consensus       161 ~~GIp~p~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~~ggss--~---------GV~~v~~~~eL~~a~~~a~~~-----  223 (373)
T 3lwb_A          161 ADGLPVGAYAVLRPPRSTLHRQECERLGL-PVFVKPARGGSS--I---------GVSRVSSWDQLPAAVARARRH-----  223 (373)
T ss_dssp             HTTCCBCCEEEECTTCCCCCHHHHHHHCS-CEEEEESBCSTT--T---------TCEEECSGGGHHHHHHHHHTT-----
T ss_pred             HcCcCCCCEEEEECcccchhHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHhc-----
Confidence            79999999999987765  2345778997 999999644322  2         788888999999998887531     


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                              -..++||++++ ++|+.+++..|..
T Consensus       224 --------~~~vlVEe~I~-G~E~~v~vl~~~~  247 (373)
T 3lwb_A          224 --------DPKVIVEAAIS-GRELECGVLEMPD  247 (373)
T ss_dssp             --------CSSEEEEECCE-EEEEEEEEEECTT
T ss_pred             --------CCCEEEeCCCC-CeEEEEEEEECCC
Confidence                    24699999998 7999999998864

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*

Probab=97.92  E-value=2e-05  Score=81.24  Aligned_cols=85  Identities=14%  Similarity=0.234  Sum_probs=67.8

Q ss_pred             hCCCCCCCccccCCHH-------HHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcc
Q psy7785          19 VSTVHSTDKVCLEDAR-------TATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH   91 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~e-------ea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~   91 (525)
                      ++|||+|++..+++.+       ++.++++++|| |||||+....+|  +         ||.+..+.+++.+++++....
T Consensus       139 ~~Gip~p~~~~~~~~~~~~~~~~~~~~~~~~~g~-PvvvKP~~g~~s--~---------Gv~~v~~~~el~~a~~~~~~~  206 (364)
T 2i87_A          139 HRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNY-PVFVKPANLGSS--V---------GISKCNNEAELKEGIKEAFQF  206 (364)
T ss_dssp             HHTCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCS-SEEEEESSCSSC--T---------TCEEESSHHHHHHHHHHHHTT
T ss_pred             HCCCCCCCEEEEechhhcccchhHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhc
Confidence            7899999999988776       46677788997 999999644332  2         788888999999888876421


Q ss_pred             ccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          92 KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        92 ~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                                   -..++||++++ +.|+.+.+..|..
T Consensus       207 -------------~~~~lvEe~I~-G~E~~v~vl~~~~  230 (364)
T 2i87_A          207 -------------DRKLVIEQGVN-AREIEVAVLGNDY  230 (364)
T ss_dssp             -------------CSEEEEEECCC-CEEEEEEEEESSS
T ss_pred             -------------CCeEEEEeCcc-CeEEEEEEEcCCC
Confidence                         25799999998 6999999998853

>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*

Probab=97.83  E-value=6.4e-06  Score=80.74  Aligned_cols=86  Identities=12%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHH--hccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKM--IGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l--~~~~~~~~   96 (525)
                      ++|||+|++.++++.+++.++++++|| |+|+|+....+|  +         ||.+..+.+++.++++++  +..     
T Consensus        98 ~~gi~~p~~~~~~~~~~~~~~~~~~~~-p~vvKp~~g~~~--~---------gv~~v~~~~el~~~~~~~~~~~~-----  160 (280)
T 1uc8_A           98 KAGLPQPKTALATDREEALRLMEAFGY-PVVLKPVIGSWG--R---------LLAXXXXXXXXXXXXXXKEVLGG-----  160 (280)
T ss_dssp             HTTCCCCCEEEESSHHHHHHHHHHHCS-SEEEECSBCCBC--S---------HHHHHHHHHC------------C-----
T ss_pred             HcCcCCCCeEeeCCHHHHHHHHHHhCC-CEEEEECCCCCc--c---------cceecccccccchhhhhHhhhcc-----
Confidence            799999999999999999999999997 999999654432  2         666666777877776665  211     


Q ss_pred             cCCCCCcccCeEEEEeeeCC-ceeEEEEEEEc
Q psy7785          97 QTPKTGINVNKVMVAKSVNI-TRETYFCIVQD  127 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~-~~E~~vgv~~D  127 (525)
                          .  ....++||+++++ +.|+.+.+..+
T Consensus       161 ----~--~~~~~lvqe~i~~~~~e~~v~v~~~  186 (280)
T 1uc8_A          161 ----F--QHQLFYIQEYVEKPGRDIRVFVVGE  186 (280)
T ss_dssp             ----T--TTTCEEEEECCCCSSCCEEEEEETT
T ss_pred             ----c--CCCcEEEEeccCCCCceEEEEEECC
Confidence                0  1256999999987 78998888744

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=97.81  E-value=2.3e-05  Score=80.97  Aligned_cols=77  Identities=17%  Similarity=0.279  Sum_probs=59.7

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++|||+|++..+++.++   +++++|| |+|+|+.... +|  +         ||.+..+.+++.++++           
T Consensus       110 ~~gip~p~~~~~~~~~~---~~~~~~~-P~vvKp~~~~y~g--~---------Gv~~v~~~~el~~~~~-----------  163 (380)
T 3ax6_A          110 KNGIPVPEYKLVKDLES---DVREFGF-PVVQKARKGGYDG--R---------GVFIIKNEKDLENAIK-----------  163 (380)
T ss_dssp             HTTCCCCCEEECSSHHH---HHHTTCS-SEEEEESCCC----------------EEEECSGGGGGGCCC-----------
T ss_pred             HcCCCCCCeEEeCCHHH---HHHhcCC-CEEEEecCCCCCC--C---------CeEEECCHHHHHHHhc-----------
Confidence            79999999999999887   6778997 9999997553 43  3         7888888776542211           


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                              ..++||++++.+.|+.+.+..|..
T Consensus       164 --------~~~lvEe~i~~g~e~sv~~~~~~~  187 (380)
T 3ax6_A          164 --------GETYLEEFVEIEKELAVMVARNEK  187 (380)
T ss_dssp             --------SSEEEEECCCEEEEEEEEEEECSS
T ss_pred             --------CCEEEEeccCCCeeEEEEEEECCC
Confidence                    469999999878999999999854

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=97.79  E-value=8e-05  Score=79.59  Aligned_cols=117  Identities=24%  Similarity=0.270  Sum_probs=88.0

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCC-----CCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG-----VNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK  375 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~-----a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~  375 (525)
                      .|+||+||-||+.+....|.+...|+-....+-++++     ...-.+.++++.+.+||++++|++..-+ .  .+.+++
T Consensus       112 ~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~-~--~e~~~~  188 (480)
T 3dmy_A          112 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKP-P--AEAVRL  188 (480)
T ss_dssp             EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESC-C--CHHHHH
T ss_pred             CCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEec-C--CcHHHH
Confidence            5799999999999999999999999877667777766     2445699999999999999999976533 1  244555


Q ss_pred             HHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785         376 GLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNA  428 (525)
Q Consensus       376 ~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~  428 (525)
                      .++++++.  .+|||++...|.... +   +++.|+...  +++++....+..
T Consensus       189 ~f~~~ar~--~~KPVV~~k~Grs~~-g---~r~~Gvirv--~~~~el~~~a~~  233 (480)
T 3dmy_A          189 KIVNAMKA--TGKPTVALFLGYTPA-V---ARDENVWFA--SSLDEAARLACL  233 (480)
T ss_dssp             HHHHHHHH--HCSCEEEEETTCCCS-S---SEETTEEEE--SSHHHHHHHHHH
T ss_pred             HHHHHHHh--CCCCEEEEEeCCCCc-c---cccCCEEEE--CCHHHHHHHHHH
Confidence            66666655  579999988775221 1   677887766  777776665543

>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*

Probab=97.76  E-value=2.8e-05  Score=79.43  Aligned_cols=83  Identities=10%  Similarity=0.166  Sum_probs=65.6

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++.++++.+++.  .+++|| |||||+....++  +         ||.+..+.+++.++++++...       
T Consensus       142 ~~Gip~p~~~~~~~~~~~~--~~~~~~-PvvvKP~~~~~s--~---------Gv~~v~~~~el~~a~~~~~~~-------  200 (343)
T 1e4e_A          142 NAGIATPAFWVINKDDRPV--AATFTY-PVFVKPARSGSS--F---------GVKKVNSADELDYAIESARQY-------  200 (343)
T ss_dssp             HTTCBCCCEEEECTTCCCC--GGGSCS-CEEEEESSCCTT--T---------TCEEECSGGGHHHHHHHHTTT-------
T ss_pred             HCCCCcCCEEEEechhhhh--hhccCC-CEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHhc-------
Confidence            7999999999998877653  267897 999999654332  2         688888999999888876421       


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                            -..++||++++ ++|+.+.+..|..
T Consensus       201 ------~~~~lvEe~I~-G~E~~v~vl~~~~  224 (343)
T 1e4e_A          201 ------DSKILIEQAVS-GCEVGCAVLGNSA  224 (343)
T ss_dssp             ------CSSEEEEECCC-SEEEEEEEEEETT
T ss_pred             ------CCcEEEEeCcC-CeEEEEEEEeCCC
Confidence                  24699999998 7999999998863

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=97.76  E-value=0.00011  Score=74.97  Aligned_cols=122  Identities=18%  Similarity=0.254  Sum_probs=87.2

Q ss_pred             cCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEe-cccccChHHHHHHH
Q psy7785         300 MDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNV-FGGIVNCATIAKGL  377 (525)
Q Consensus       300 ~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~-~~~~~~~~~ia~~i  377 (525)
                      ..|+||+||-||+++....|.+...|+-..-.+-++++.-.+ .+.++++.+.+||++++|++.. .++..+     +.+
T Consensus       167 ~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e-----~~~  241 (334)
T 3mwd_B          167 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEE-----YKI  241 (334)
T ss_dssp             SCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHH-----HHH
T ss_pred             CCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHH-----HHH
Confidence            357999999999999999999999999877888888873222 3899999999999999988752 233322     334


Q ss_pred             HHHHHhcCCCCcEEEEeCCc-ch-----------------H-----HHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785         378 VNACKSFKLSIPLVVRLEGT-NV-----------------Q-----EGKRILDESKLPLIFASDLDEAASLVNA  428 (525)
Q Consensus       378 ~~a~~~~~~~kPivv~~~g~-~~-----------------~-----~~~~~L~~~Gvpvf~~~s~~~Av~Al~~  428 (525)
                      ++++++...+|||++...|. ..                 .     .-...|+++|+.+.  +++++-...+.+
T Consensus       242 ~~~~r~~~~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~~aGv~~v--~~~~el~~~~~~  313 (334)
T 3mwd_B          242 CRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVP--RSFDELGEIIQS  313 (334)
T ss_dssp             HHHHHTTSCCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTCBCC--SSGGGHHHHHHH
T ss_pred             HHHHHhhcCCCCEEEEEcCCCcccccccccccchhhhccCCCccHHHHHHHHHHcCCeEc--CCHHHHHHHHHH
Confidence            44555433689999875442 11                 1     23457899999887  666665555544

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}

Probab=97.75  E-value=3.9e-05  Score=79.45  Aligned_cols=77  Identities=18%  Similarity=0.313  Sum_probs=60.0

Q ss_pred             hCCCCCCCccccCCHH--HHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVCLEDAR--TATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~e--ea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++.++++.+  ++.+ ++++|| |||||+....++  +         ||.+..+.+++.+++++.+..     
T Consensus       159 ~~Gip~p~~~~~~~~~~~~~~~-~~~lg~-PvvVKP~~g~ss--~---------Gv~~v~~~~el~~a~~~~~~~-----  220 (367)
T 2pvp_A          159 DLGIKTLDYVLLNEKNRANALD-LMNFNF-PFIVKPSNAGSS--L---------GVNVVKEEKELIYALDSAFEY-----  220 (367)
T ss_dssp             HHTCBCCCCEEECTTTGGGHHH-HCCSCS-CEEEEESSCCTT--T---------TCEEESSTTSHHHHHHHHTTT-----
T ss_pred             HCCcCCCCEEEEeCCchHHHHH-HhccCC-CEEEEECCCCCC--C---------CEEEECCHHHHHHHHHHHHhc-----
Confidence            7899999999998877  6766 778997 999999644322  2         677888999999888876421     


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEE
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETY  121 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~  121 (525)
                              -..++||+++++.+|+.
T Consensus       221 --------~~~vlVEe~I~G~~E~s  237 (367)
T 2pvp_A          221 --------SKEVLIEPFIQGVKEYN  237 (367)
T ss_dssp             --------CSCEEEEECCTTCEEEE
T ss_pred             --------CCcEEEEeCCCCCceee
Confidence                    24699999998559944

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.74  E-value=0.00026  Score=70.92  Aligned_cols=121  Identities=17%  Similarity=0.267  Sum_probs=87.3

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+||+||-||+.+....|.+...|+-..-.+-+++++..+ .+.++++.+.+||++++|++..-+. .+.+..+....+
T Consensus       144 ~G~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~-~~~~~~~~~~~~  222 (288)
T 1oi7_A          144 RGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIG-GSDEEEAAAWVK  222 (288)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSS-SSHHHHHHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHHH
Confidence            47899999999999999999999999888888888887432 4889999999999999998764432 223333333333


Q ss_pred             HHHhcCCCCcEEEEeCCcch--------------------HHHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785         380 ACKSFKLSIPLVVRLEGTNV--------------------QEGKRILDESKLPLIFASDLDEAASLVNA  428 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~~~--------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~  428 (525)
                      +  .  .+|||++...|...                    ......|+++|+...  +++++-...+.+
T Consensus       223 ~--~--~~KPVv~~k~G~~~~~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~~--~~~~el~~~~~~  285 (288)
T 1oi7_A          223 D--H--MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVA--DTIDEIVELVKK  285 (288)
T ss_dssp             H--H--CCSCEEEEESCC------------------CCSHHHHHHHHHHHTCCBC--SSHHHHHHHHHH
T ss_pred             h--c--CCCCEEEEEecCCCCccccCcchhhcccCCCCCHHHHHHHHHHCCCeEe--CCHHHHHHHHHH
Confidence            3  2  57999987655311                    112447778888877  777776665544

>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}

Probab=97.67  E-value=2.5e-05  Score=82.11  Aligned_cols=92  Identities=9%  Similarity=0.032  Sum_probs=64.7

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++..+++.+++.+  .++|| |+|||+....+|  +         ||.+..+.+|+.++++++..........
T Consensus       122 ~~gip~p~~~~~~~~~~~~~--~~~g~-P~vvKp~~g~gs--~---------Gv~~v~~~~el~~a~~~~~~~~~~~~~~  187 (425)
T 3vot_A          122 QNGLNTPVFHEFHTLADLEN--RKLSY-PLVVKPVNGFSS--Q---------GVVRVDDRKELEEAVRKVEAVNQRDLNR  187 (425)
T ss_dssp             HTTCCCCCEEEESSGGGGTT--CCCCS-SEEEEESCC----------------CEEECSHHHHHHHHHHHHHHTTSSHHH
T ss_pred             HCCCCCCceeccCcHHHHHH--hhcCC-cEEEEECCCCCC--C---------CceEechHHHHHHHHHHHHhhhhhhhhh
Confidence            79999999999999988753  57897 999999644332  3         7889999999999998876421100000


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQD  127 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D  127 (525)
                        .+..-..++||++++ +.|+.+.+..+
T Consensus       188 --~~~~~~~~lvEe~i~-G~e~sv~~~~~  213 (425)
T 3vot_A          188 --FVHGKTGIVAEQFID-GPEFAIETLSI  213 (425)
T ss_dssp             --HHTTCCCEEEEECCC-SCEEEEEEEEE
T ss_pred             --hccCCCcEEEEEEec-CcEEEEEEEEe
Confidence              001135799999998 67998877765

>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}

Probab=97.65  E-value=8.4e-05  Score=74.95  Aligned_cols=85  Identities=12%  Similarity=0.149  Sum_probs=48.6

Q ss_pred             hCCCCCCCccccCCHHHHHHHH--HhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNIL--KDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a--~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+|++..  +.+++.++.  ++++| |+|+|+....+|  +         ||.+..+.+++.+++++         
T Consensus       124 ~~gip~p~~~~--~~~~~~~~~~~~~~~~-P~vvKp~~g~g~--~---------gv~~v~~~~el~~~~~~---------  180 (331)
T 2pn1_A          124 RQGIAHARTYA--TMASFEEALAAGEVQL-PVFVKPRNGSAS--I---------EVRRVETVEEVEQLFSK---------  180 (331)
T ss_dssp             HHTCCCCCEES--SHHHHHHHHHTTSSCS-CEEEEESBC-----------------------------------------
T ss_pred             HcCCCCCcEEe--cHHHhhhhhhcccCCC-CEEEEeCCCCCC--C---------CeEEeCCHHHHHHHHHh---------
Confidence            79999999865  567776666  57887 999999654332  2         78777788777655332         


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEE
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVI  136 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~  136 (525)
                              ...++||+++++ .|+.+.+..|+.. |.++.
T Consensus       181 --------~~~~lvee~i~G-~e~~v~~~~d~~~-G~~~~  210 (331)
T 2pn1_A          181 --------NTDLIVQELLVG-QELGVDAYVDLIS-GKVTS  210 (331)
T ss_dssp             ----------CEEEEECCCS-EEEEEEEEECTTT-CCEEE
T ss_pred             --------CCCeEEEecCCC-cEEEEEEEEecCC-CeEEE
Confidence                    136999999985 9999999998333 44443

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}

Probab=97.65  E-value=6.1e-05  Score=78.86  Aligned_cols=43  Identities=21%  Similarity=0.284  Sum_probs=39.0

Q ss_pred             CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785         445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEG  492 (525)
Q Consensus       445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~  492 (525)
                      ++|+++|++|++||||+   .+++|.+||.+   +++++  |||||+|.++
T Consensus         3 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~---aa~~l--G~PvVvKa~~   48 (397)
T 3ufx_B            3 LHEYQAKEILARYGVPVPPGKVAYTPEEAKR---IAEEF--GKRVVIKAQV   48 (397)
T ss_dssp             CCHHHHHHHHHHTTCCCCCEEEESSHHHHHH---HHHHH--TSCEEEEECC
T ss_pred             CCHHHHHHHHHHCCCCCCCeEEECCHHHHHH---HHHHc--CCCEEEEEcc
Confidence            47999999999999999   89999999998   56775  9999999987

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.62  E-value=0.00012  Score=73.88  Aligned_cols=118  Identities=17%  Similarity=0.182  Sum_probs=83.9

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCH-HHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNE-ESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~-~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+||+||-||+.+....|.+...|+-....+-+++++.. -.+.++++.+.+||++++|++..-+. .+.+..++.+.+
T Consensus       152 ~G~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~-g~~e~~~~~f~~  230 (305)
T 2fp4_A          152 KGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIG-GNAEENAAEFLK  230 (305)
T ss_dssp             EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESS-SSHHHHHHHHHH
T ss_pred             CCCEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecC-CchhhHHHHHHH
Confidence            5789999999999999999999999988888888888642 24889999999999999998754332 222334445555


Q ss_pred             HHHhcCCCCcEEEEeCCcc--------------------hHHHHHHHhhCCCCccccCCHHH
Q psy7785         380 ACKSFKLSIPLVVRLEGTN--------------------VQEGKRILDESKLPLIFASDLDE  421 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~~--------------------~~~~~~~L~~~Gvpvf~~~s~~~  421 (525)
                      +.+....+|||++...|..                    .......|+++|+...  +++++
T Consensus       231 ~~~~~~~~KPVv~~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~v--~~~~e  290 (305)
T 2fp4_A          231 QHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVS--MSPAQ  290 (305)
T ss_dssp             HHSCSTTCCCEEEEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCEEC--SSTTC
T ss_pred             HHHHhcCCCCEEEEEecCCccccccccchhhhhccCCccHHHHHHHHHHCCCeEe--CCHHH
Confidence            4443224799998655421                    1112457788888766  44443

>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*

Probab=97.60  E-value=3.9e-05  Score=77.76  Aligned_cols=83  Identities=14%  Similarity=0.216  Sum_probs=64.1

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++.++++.++.  +. ++|| |+|||+....+|  +         ||.+..+.+++.+++++.+..       
T Consensus       128 ~~Gip~p~~~~~~~~~~~--~~-~~g~-PvvvKP~~g~~s--~---------Gv~~v~~~~el~~a~~~~~~~-------  185 (322)
T 2fb9_A          128 QAGVPVVPWVAVRKGEPP--VV-PFDP-PFFVKPANTGSS--V---------GISRVERFQDLEAALALAFRY-------  185 (322)
T ss_dssp             HTTCCCCCEEEEETTSCC--CC-CSCS-CEEEEETTCCTT--T---------TCEEESSHHHHHHHHHHHTTT-------
T ss_pred             HCCCCCCCEEEEECchhh--hh-ccCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhc-------
Confidence            799999999999877652  22 7887 999999644322  2         788888999999888876421       


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                            -..++||+++++.+|+.+++..|..
T Consensus       186 ------~~~vlvEe~I~G~~E~~v~vl~~~~  210 (322)
T 2fb9_A          186 ------DEKAVVEKALSPVRELEVGVLGNVF  210 (322)
T ss_dssp             ------CSEEEEEECCSSCEEEEEEEESSSS
T ss_pred             ------CCeEEEEeCCCCCeeEEEEEEeCCC
Confidence                  2579999999855999999997753

>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*

Probab=97.58  E-value=9.3e-05  Score=76.54  Aligned_cols=82  Identities=11%  Similarity=0.110  Sum_probs=59.1

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++  +++++++       ++ |||||+....+  ||         ||.+..|.+|+.+++++++....     
T Consensus       134 ~~GIptp~~--~~~~~e~-------~~-PvVVK~~~~a~--Gk---------Gv~v~~s~ee~~~a~~~~~~~~~-----  187 (361)
T 2r7k_A          134 EAGLRVPKK--YESPEDI-------DG-TVIVKFPGARG--GR---------GYFIASSTEEFYKKAEDLKKRGI-----  187 (361)
T ss_dssp             HTTCCCCCE--ESSGGGC-------CS-CEEEECSCCCC--------------EEEESSHHHHHHHHHHHHHTTS-----
T ss_pred             HcCcCCCCE--eCCHHHc-------CC-CEEEeeCCCCC--CC---------CEEEECCHHHHHHHHHHHHhccc-----
Confidence            899999975  6777765       56 99999987765  45         89999999999999999875421     


Q ss_pred             CCCCcc-cCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGIN-VNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~-~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                        .+.. ...++||||++ +.|+++....++.
T Consensus       188 --~~~~~~~~viIEEfl~-G~e~s~~~f~~~~  216 (361)
T 2r7k_A          188 --LTDEDIANAHIEEYVV-GTNFCIHYFYSPL  216 (361)
T ss_dssp             --CCHHHHHHCEEEECCC-SEEEEEEEEEETT
T ss_pred             --cccCCCCeEEEEeccc-eEEeeEEEEeccc
Confidence              1111 24699999998 6888754555544

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.48  E-value=0.00035  Score=70.24  Aligned_cols=121  Identities=14%  Similarity=0.251  Sum_probs=84.5

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+||+||-||+.+....|.+...|+-..-.+-+++++..+ .+.++++.+.+||++++|++..-.. .+.+..+..+.+
T Consensus       151 ~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~-~~~~~~~~~~~~  229 (297)
T 2yv2_A          151 EGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIG-GDMEERAAEMIK  229 (297)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSS-SSHHHHHHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHHH
Confidence            57899999999999999999999999888888888887432 4889999999999999998764432 223333333333


Q ss_pred             HHHhcCCCCcEEEEeCCcch--------------------HHHHHHHhhCCCCccccCCHHHHHHHHH
Q psy7785         380 ACKSFKLSIPLVVRLEGTNV--------------------QEGKRILDESKLPLIFASDLDEAASLVN  427 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~~~--------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~  427 (525)
                      +   ...+|||++...|...                    ......|+++|+...  +++++-...+.
T Consensus       230 ~---~~~~KPVv~~k~G~s~~~~~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~v--~~~~el~~~~~  292 (297)
T 2yv2_A          230 K---GEFTKPVIAYIAGRTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVA--ETPFEVPELVR  292 (297)
T ss_dssp             T---TSCCSCEEEEESCCC------------------CSHHHHHHHHHTTTCEEE--SSGGGHHHHHH
T ss_pred             h---ccCCCCEEEEEeCCCCccccccCCccccccCCCCCHHHHHHHHHHcCCeEe--CCHHHHHHHHH
Confidence            2   1258999987665321                    112346677777766  66555444443

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.43  E-value=0.00042  Score=69.61  Aligned_cols=119  Identities=14%  Similarity=0.239  Sum_probs=82.4

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+||+||-||+.+....|.+...|+-....+-+++++..+ .+.++++.+.+||++++|++..-+. .+.+..+   .+
T Consensus       150 ~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~-g~~~~~~---~~  225 (294)
T 2yv1_A          150 EGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIG-GGAEEEA---AK  225 (294)
T ss_dssp             EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESS-SSHHHHH---HH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHH---HH
Confidence            47899999999999999999999999888888888887432 4889999999999999998764332 2222222   23


Q ss_pred             HHHhcCCCCcEEEEeCCcch--------------------HHHHHHHhhCCCCccccCCHHHHHHHHH
Q psy7785         380 ACKSFKLSIPLVVRLEGTNV--------------------QEGKRILDESKLPLIFASDLDEAASLVN  427 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~~~--------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~  427 (525)
                      .++.  .+|||++...|...                    ......|+++|+...  +++++-...+.
T Consensus       226 ~~~~--~~KPVv~~k~G~~~~~g~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~~--~~~~el~~~~~  289 (294)
T 2yv1_A          226 FIEK--MKKPVIGYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVA--KNISDIPKLLA  289 (294)
T ss_dssp             HHTT--CSSCEEEEEECC-------------------CCHHHHHHHHHHHTCEEC--SSTTHHHHHHH
T ss_pred             HHHh--CCCCEEEEEecCCCCccccCCchhhhccCCCCCHHHHHHHHHHCCCeEe--CCHHHHHHHHH
Confidence            3333  57999987555321                    112346667777665  55555444443

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.41  E-value=0.00077  Score=67.41  Aligned_cols=120  Identities=14%  Similarity=0.236  Sum_probs=85.7

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+||+||-||+.+....|.+...|+-..-.+-+++++..+ .+.++++.+.+||++++|++..-+. .+.+..++.+.+
T Consensus       144 ~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~-~~~~~~~~~~~~  222 (288)
T 2nu8_A          144 PGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIG-GSAEEEAAAYIK  222 (288)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESS-SSHHHHHHHHHH
T ss_pred             CCCEEEEECcHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHHH
Confidence            47899999999999999999999999877778788876422 4889999999999999988754332 233444444444


Q ss_pred             HHHhcCCCCcEEEEeCCcc--------------------hHHHHHHHhhCCCCccccCCHHHHHHHHH
Q psy7785         380 ACKSFKLSIPLVVRLEGTN--------------------VQEGKRILDESKLPLIFASDLDEAASLVN  427 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~~--------------------~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~  427 (525)
                      +  .  .+|||++...|..                    .......|+++|+...  +++++-...+.
T Consensus       223 ~--~--~~KPVv~~k~G~~~~~g~~~~Htga~~~~~~g~~~~~~aa~~~aGv~~~--~~~~el~~~~~  284 (288)
T 2nu8_A          223 E--H--VTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTV--RSLADIGEALK  284 (288)
T ss_dssp             H--H--CCSCEEEEEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHTTCEEC--SSGGGHHHHHH
T ss_pred             h--c--CCCCEEEEEeCCCCcccccccchhhhhccCCccHHHHHHHHHHCCCeEe--CCHHHHHHHHH
Confidence            4  2  5799998654421                    1112447788888776  66666555443

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A

Probab=97.24  E-value=0.0012  Score=69.56  Aligned_cols=121  Identities=19%  Similarity=0.167  Sum_probs=73.2

Q ss_pred             HHHHHhcCCCccEEEEEec-ccc---cC------hHHHHHHHHHHHHhcCCCCcEEEEeCCcc--hHHHHHHHhhCCCCc
Q psy7785         346 AFRIISSDSNVKCILVNVF-GGI---VN------CATIAKGLVNACKSFKLSIPLVVRLEGTN--VQEGKRILDESKLPL  413 (525)
Q Consensus       346 al~~ll~dp~vd~vlv~~~-~~~---~~------~~~ia~~i~~a~~~~~~~kPivv~~~g~~--~~~~~~~L~~~Gvpv  413 (525)
                      ....+.++++++.+++.-. .+.   ..      .....+.+.+.+++  .+..+++. ....  .....+.|++.|+|+
T Consensus        18 la~~l~~s~~v~~v~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~--~~id~vv~-g~e~~l~~~~~~~l~~~Gi~~   94 (431)
T 3mjf_A           18 LGWKAAQSPLADKIYVAPGNAGTALEPTLENVDIAATDIAGLLAFAQS--HDIGLTIV-GPEAPLVIGVVDAFRAAGLAI   94 (431)
T ss_dssp             HHHHHTTCTTEEEEEEEECCHHHHHCTTCEECCCCTTCHHHHHHHHHH--TTEEEEEE-CSHHHHHTTHHHHHHHTTCCE
T ss_pred             HHHHHHhCCCCCEEEEECCCHHHhhhcccceecCCcCCHHHHHHHHHH--hCcCEEEE-CCchHHHHHHHHHHHhcCCCe
Confidence            3445666777776665311 000   00      01123566676666  33334432 2211  123456888999999


Q ss_pred             cccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEE
Q psy7785         414 IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRL  490 (525)
Q Consensus       414 f~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi  490 (525)
                      |  ....+++....                  +-...+++|+++|||+   ..+++.+++.+   .++++  |||+|+|-
T Consensus        95 ~--Gp~~~a~~~~~------------------dK~~~k~~l~~~GIptp~~~~~~~~~ea~~---~~~~~--g~PvVvKp  149 (431)
T 3mjf_A           95 F--GPTQAAAQLEG------------------SKAFTKDFLARHNIPSAEYQNFTDVEAALA---YVRQK--GAPIVIKA  149 (431)
T ss_dssp             E--SCCHHHHHHHH------------------CHHHHHHHHHHTTCSBCCEEEESCHHHHHH---HHHHH--CSSEEEEE
T ss_pred             e--CCCHHHHHHhh------------------CHHHHHHHHHHcCCCCCCeEeeCCHHHHHH---HHHHc--CCeEEEEE
Confidence            8  44444433321                  2346899999999999   78899999887   45564  99999998


Q ss_pred             ecCC
Q psy7785         491 EGTN  494 (525)
Q Consensus       491 ~~~~  494 (525)
                      .+..
T Consensus       150 ~~~~  153 (431)
T 3mjf_A          150 DGLA  153 (431)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            7654

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=97.12  E-value=0.0011  Score=75.04  Aligned_cols=123  Identities=18%  Similarity=0.210  Sum_probs=86.4

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+||+||-||+++....|.+...|+-..-.+-+++++..+ .+.++++.+.+||++++|++..-.+.......|+    
T Consensus       654 ~G~VgiVSqSGal~~~i~~~~~~~g~G~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly~Ei~g~~f~~aA~----  729 (829)
T 3pff_A          654 PGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICR----  729 (829)
T ss_dssp             CCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHH----
T ss_pred             CCcEEEEechhHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEEEecCchHHHHHHH----
Confidence            57999999999999999999999999777788888874322 4889999999999999999764322222223333    


Q ss_pred             HHHhcCCCCcEEEEeCCcchH-----------------------HHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785         380 ACKSFKLSIPLVVRLEGTNVQ-----------------------EGKRILDESKLPLIFASDLDEAASLVNAC  429 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~~~~-----------------------~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l  429 (525)
                      .+++...+|||++...|....                       .-...|+++|+.+.  +++++-...+.+.
T Consensus       730 ~~~~~~~~KPVVa~kaGrsa~~~~~~~~~sHtGAlag~~~~ta~~~~aa~r~aGvi~v--~~~~el~~~~~~~  800 (829)
T 3pff_A          730 GIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVP--RSFDELGEIIQSV  800 (829)
T ss_dssp             HHHTTSCCSCEEEEEECSSTTC---------------CGGGSHHHHHHHHHHTTCBCC--SSGGGHHHHHHHH
T ss_pred             HHHhccCCCCEEEEEecCcCcccccccccccccccccCCcccHHHHHHHHHHcCCeEc--CCHHHHHHHHHHH
Confidence            233112679999875552111                       23457899999887  6666655555443

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*

Probab=97.11  E-value=0.00071  Score=70.71  Aligned_cols=42  Identities=17%  Similarity=0.351  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCC-cEEEEEe
Q psy7785         445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSI-PLVVRLE  491 (525)
Q Consensus       445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~-PVVlKi~  491 (525)
                      ++|+++|++|++||||+   .++.|.+||.+   +++++  || |||+|.+
T Consensus         3 l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~---~a~~l--g~~PvVvK~~   48 (395)
T 2fp4_B            3 LQEYQSKKLMSDNGVKVQRFFVADTANEALE---AAKRL--NAKEIVLKAQ   48 (395)
T ss_dssp             CCHHHHHHHHHHTTCCCCCEEEESSHHHHHH---HHHHH--TCSSEEEEEC
T ss_pred             CCHHHHHHHHHHCCcCCCCeEEECCHHHHHH---HHHHc--CCCcEEEEEe
Confidence            46899999999999999   89999999998   56675  99 8999994

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*

Probab=97.02  E-value=0.00092  Score=69.71  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=38.4

Q ss_pred             CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCc-EEEEEec
Q psy7785         445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIP-LVVRLEG  492 (525)
Q Consensus       445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~P-VVlKi~~  492 (525)
                      ++|+++|++|++||||+   .++.|.+||.+   +++++  ||| ||+|.+.
T Consensus         3 l~E~~aK~lL~~~GIpvp~~~~~~s~eea~~---aa~~l--G~P~vVvK~~~   49 (388)
T 2nu8_B            3 LHEYQAKQLFARYGLPAPVGYACTTPREAEE---AASKI--GAGPWVVKCQV   49 (388)
T ss_dssp             CCHHHHHHHHHHTTCCCCCEEEESSHHHHHH---HHHHH--CSSCEEEEECC
T ss_pred             CCHHHHHHHHHHCCcCCCCeeEECCHHHHHH---HHHHh--CCCeEEEEEec
Confidence            46899999999999999   88999999988   56675  999 9999976

>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*

Probab=97.01  E-value=0.0017  Score=65.02  Aligned_cols=82  Identities=16%  Similarity=0.250  Sum_probs=56.8

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++  ++++++       ++| |+|||+....+|  +         ||.+..+.+++.++++++.....     
T Consensus       110 ~~gip~p~~--~~~~~~-------l~~-P~vvKP~~g~~s--~---------Gv~~v~~~~el~~~~~~~~~~~~-----  163 (334)
T 2r85_A          110 KAGIRVPEV--YEDPDD-------IEK-PVIVKPHGAKGG--K---------GYFLAKDPEDFWRKAEKFLGIKR-----  163 (334)
T ss_dssp             HTTCCCCCB--CSCGGG-------CCS-CEEEEECC------T---------TCEEESSHHHHHHHHHHHHCCCS-----
T ss_pred             HcCCCCCCc--cCChHH-------cCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhhcc-----
Confidence            799999998  566653       576 999999755443  3         78888899999988888754210     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                        .+ ....++|||+++ +.|+.+.+..++..
T Consensus       164 --~~-~~~~~lvee~i~-G~e~~~~~~~~~~~  191 (334)
T 2r85_A          164 --KE-DLKNIQIQEYVL-GVPVYPHYFYSKVR  191 (334)
T ss_dssp             --GG-GCCSEEEEECCC-CEEEEEEEEEETTT
T ss_pred             --cC-CCCcEEEEeccC-CceeEEEEeecCcC
Confidence              00 125699999998 67887766666543

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}

Probab=96.93  E-value=0.0058  Score=64.60  Aligned_cols=92  Identities=22%  Similarity=0.232  Sum_probs=60.3

Q ss_pred             HHHHHHHHhcCCCCcEEEEeCCcchH--HHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHH
Q psy7785         375 KGLVNACKSFKLSIPLVVRLEGTNVQ--EGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR  452 (525)
Q Consensus       375 ~~i~~a~~~~~~~kPivv~~~g~~~~--~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~  452 (525)
                      +.+.+.+++  .+..+++. ......  ...+.|++.|+|+|  ....+++....                  +-...++
T Consensus        73 ~~l~~~a~~--~~id~vv~-g~E~~l~~~~~~~l~~~Gi~~~--Gp~~~a~~~~~------------------dK~~~k~  129 (442)
T 3lp8_A           73 IEVIQVCKK--EKIELVVI-GPETPLMNGLSDALTEEGILVF--GPSKAAARLES------------------SKGFTKE  129 (442)
T ss_dssp             HHHHHHHHH--TTCCEEEE-CSHHHHHTTHHHHHHHTTCEEE--SCCHHHHHHHH------------------CHHHHHH
T ss_pred             HHHHHHHHH--hCCCEEEE-CCcHHHHHHHHHHHHhcCCcEe--cCCHHHHHHhh------------------CHHHHHH
Confidence            566666665  33334443 222111  23567888999998  44444433321                  2346899


Q ss_pred             HHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         453 ILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       453 LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      +|+++|||+   ..+++.+++.+   .++++  |||+|+|-.+..
T Consensus       130 ~l~~~GIp~p~~~~~~~~~ea~~---~~~~~--g~PvVvKp~~~~  169 (442)
T 3lp8_A          130 LCMRYGIPTAKYGYFVDTNSAYK---FIDKH--KLPLVVKADGLA  169 (442)
T ss_dssp             HHHHHTCCBCCEEEESSHHHHHH---HHHHS--CSSEEEEESSCC
T ss_pred             HHHHCCCCCCCEEEECCHHHHHH---HHHHc--CCcEEEeECCCC
Confidence            999999999   78899999887   45564  999999986544

>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}

Probab=96.85  E-value=0.0011  Score=64.08  Aligned_cols=44  Identities=32%  Similarity=0.446  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785         445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGT  493 (525)
Q Consensus       445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~  493 (525)
                      +++.++|++|++||||+   .++.+.+|+.+   +++++  |||||+|.++.
T Consensus        20 l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~---~a~~l--g~PvvvKp~~~   66 (238)
T 1wr2_A           20 MVEYEAKQVLKAYGLPVPEEKLAKTLDEALE---YAKEI--GYPVVLKLMSP   66 (238)
T ss_dssp             ECHHHHHHHHHTTTCCCCCCEEESSHHHHHH---HHHHH--CSSEEEEEECT
T ss_pred             CCHHHHHHHHHHcCcCCCCeEEeCCHHHHHH---HHHHh--CCCEEEEEccC
Confidence            46889999999999999   88999999887   46675  99999999886

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*

Probab=96.64  E-value=0.0026  Score=67.13  Aligned_cols=157  Identities=12%  Similarity=0.119  Sum_probs=88.9

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC  381 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~  381 (525)
                      .+|.| .++|..+...+-++.+.|.++- -+|...+....    ..+  ..    |-.+..-+..........+.|.+++
T Consensus         7 ~kiLI-~g~g~~a~~i~~aa~~~G~~~v-~v~~~~~~~~~----~~~--~a----d~~~~i~~~~~~~~~~d~~~l~~~~   74 (446)
T 3ouz_A            7 KSILI-ANRGEIALRALRTIKEMGKKAI-CVYSEADKDAL----YLK--YA----DASICIGKARSSESYLNIPAIIAAA   74 (446)
T ss_dssp             CEEEE-CCCHHHHHHHHHHHHHTTCEEE-EEEEGGGTTCT----HHH--HS----SEEEEEECCTTTTGGGCHHHHHHHH
T ss_pred             ceEEE-ECCCHHHHHHHHHHHHcCCEEE-EEEcCcccccc----hHh--hC----CEEEEcCCCCccccccCHHHHHHHH
Confidence            46666 6788899999999999998631 01111111111    111  12    2222211111111111124566665


Q ss_pred             HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785         382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL  459 (525)
Q Consensus       382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI  459 (525)
                      ++.  +...++...|.  ......+.+.+.|+|++  ....+++..+.                  +-...+++|+++||
T Consensus        75 ~~~--~~d~i~p~~g~~~e~~~~~~~~~~~g~~~~--g~~~~~~~~~~------------------dK~~~~~~l~~~Gi  132 (446)
T 3ouz_A           75 EIA--EADAIFPGYGFLSENQNFVEICAKHNIKFI--GPSVEAMNLMS------------------DKSKAKQVMQRAGV  132 (446)
T ss_dssp             HHH--TCSEEECCSSTTTTCHHHHHHHHHTTCEES--SCCHHHHHHHH------------------SHHHHHHHHHHTTC
T ss_pred             HHh--CcCEEEECCcccccCHHHHHHHHHCCCceE--CcCHHHHHHhC------------------CHHHHHHHHHHcCC
Confidence            552  33344322232  22445677888999987  44444454432                  23468999999999


Q ss_pred             Ce--E---EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHH
Q psy7785         460 PL--I---FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQE  497 (525)
Q Consensus       460 pv--~---lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~  497 (525)
                      |+  .   .+.+.+++.+   .++++  |||||+|-....-.+
T Consensus       133 p~p~~~~~~~~~~~e~~~---~~~~~--g~PvvvKp~~g~gg~  170 (446)
T 3ouz_A          133 PVIPGSDGALAGAEAAKK---LAKEI--GYPVILKAAAGGGGR  170 (446)
T ss_dssp             CBCSBCSSSCCSHHHHHH---HHHHH--CSSEEEEETTCCTTC
T ss_pred             CcCCCcccCCCCHHHHHH---HHHHh--CCCEEEEECCCCCCC
Confidence            99  3   6789999887   45664  999999987655333

>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*

Probab=96.63  E-value=0.0043  Score=62.13  Aligned_cols=79  Identities=6%  Similarity=0.136  Sum_probs=57.9

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhc--CCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDL--NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~l--g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      +.|||+|++.++++.+++.+++++.  +| |+|+|+..-.+|.+        .-||.+..+.+++.        . .   
T Consensus       108 ~~gi~~P~~~~~~~~~~~~~~~~~~~~~~-P~vvKP~~g~g~~~--------s~gv~~v~~~~~l~--------~-~---  166 (324)
T 1z2n_X          108 KNNIPIPNSFSVKSKEEVIQLLQSKQLIL-PFIVKPENAQGTFN--------AHQMKIVLEQEGID--------D-I---  166 (324)
T ss_dssp             HTTCCCSCEEEESSHHHHHHHHHTTCSCS-SEEEEESBCSSSSG--------GGEEEEECSGGGGT--------T-C---
T ss_pred             HCCCCCCCEEEeCCHHHHHHHHHHcCCCC-CEEEeeCCCCCCcc--------ceeeEEEeCHHHHh--------h-c---
Confidence            7999999999999999998888874  46 99999965333211        24787877766532        0 1   


Q ss_pred             cCCCCCcccCeEEEEeeeCC-ceeEEEEEEE
Q psy7785          97 QTPKTGINVNKVMVAKSVNI-TRETYFCIVQ  126 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~-~~E~~vgv~~  126 (525)
                              -..++||+++++ +.|+.+.+..
T Consensus       167 --------~~~~lvqe~i~~~g~~~~v~v~g  189 (324)
T 1z2n_X          167 --------HFPCLCQHYINHNNKIVKVFCIG  189 (324)
T ss_dssp             --------CSSEEEEECCCCTTCEEEEEEET
T ss_pred             --------CCCEEEEEccCCCCcEEEEEEEC
Confidence                    135899999985 6888887763

>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A

Probab=96.53  E-value=0.0029  Score=68.75  Aligned_cols=169  Identities=18%  Similarity=0.155  Sum_probs=91.9

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCC-CC--eeeecCCCC-HHHHHHHHHHHhcCCCccEEEEEeccc-ccChHHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEP-AN--FLDVGGGVN-EESIIQAFRIISSDSNVKCILVNVFGG-IVNCATIAKG  376 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~-aN--PlDl~g~a~-~~~~~~al~~ll~dp~vd~vlv~~~~~-~~~~~~ia~~  376 (525)
                      .+|. |.|+|-.++-..-+|.+.|.+. +|  -+....-.+ .+....+...-+.|.   .+  .+.++ ........+.
T Consensus        41 ~kvL-ianrGeia~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe---~~--~i~~~~~~~sy~d~~~  114 (540)
T 3glk_A           41 EKVL-IANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADH---YV--PVPGGPNNNNYANVEL  114 (540)
T ss_dssp             CEEE-ECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSE---EE--ECCCSSGGGTTTCHHH
T ss_pred             cEEE-EECChHHHHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCE---EE--EeCCCCcccccccHHH
Confidence            3554 5678889999999998875211 00  011111111 122333344334453   12  22221 1111122356


Q ss_pred             HHHHHHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHH
Q psy7785         377 LVNACKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL  454 (525)
Q Consensus       377 i~~a~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL  454 (525)
                      |++++++  .+...+....|.  ......+.+++.|+|++  ....+++..+.                  +-..+|++|
T Consensus       115 ii~~a~~--~~~daI~pg~gflsE~~~~a~~le~~Gi~~i--Gp~~~ai~~~~------------------DK~~~k~ll  172 (540)
T 3glk_A          115 IVDIAKR--IPVQAVWAGWGHASENPKLPELLCKNGVAFL--GPPSEAMWALG------------------DKIASTVVA  172 (540)
T ss_dssp             HHHHHHH--TTCSEEECCSSGGGGCTHHHHHHHHTTCEES--SCCHHHHC---------------------CHHHHHHHH
T ss_pred             HHHHHHH--hCCCEEEeCCCccccCHHHHHHHHHcCCcee--CCCHHHHHHhC------------------CHHHHHHHH
Confidence            7777776  344444322332  22334567889999987  55555554432                  345799999


Q ss_pred             HHCCCCe---EE-----------------------------EcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhh
Q psy7785         455 DESKLPL---IF-----------------------------ASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL  502 (525)
Q Consensus       455 ~ayGIpv---~l-----------------------------A~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~  502 (525)
                      +++|||+   ..                             +.+.+++.+   .++++  |||||+|-....-.+|-+++
T Consensus       173 ~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~---~a~~i--gyPvVVKp~~ggGG~Gv~iv  247 (540)
T 3glk_A          173 QTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLE---AAERI--GFPLMIKASEGGGGKGIRKA  247 (540)
T ss_dssp             HHTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHH---HHHHH--CSSEEEEETTCC----EEEE
T ss_pred             HHcCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHH---HHHhc--CCcEEEEECCCCCCCCEEEE
Confidence            9999999   23                             677888877   46674  99999999887765555444


Q ss_pred             h
Q psy7785         503 D  503 (525)
Q Consensus       503 ~  503 (525)
                      +
T Consensus       248 ~  248 (540)
T 3glk_A          248 E  248 (540)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*

Probab=96.44  E-value=0.0035  Score=68.70  Aligned_cols=165  Identities=19%  Similarity=0.163  Sum_probs=92.9

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCC-CC--eeeecCCCC-HHHHHHHHHHHhcCCCccEEEEEecccc-cChHHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEP-AN--FLDVGGGVN-EESIIQAFRIISSDSNVKCILVNVFGGI-VNCATIAKGL  377 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~-aN--PlDl~g~a~-~~~~~~al~~ll~dp~vd~vlv~~~~~~-~~~~~ia~~i  377 (525)
                      +|. |.|.|-.++-..-+|.+.|.+. +|  =+....-.+ .+....+...-+.|.    . +.+.++. .......+.|
T Consensus        58 kvL-IanrGeiA~riira~r~lG~e~f~~e~Gi~tVav~s~~D~~~~a~~~~~ADe----~-v~i~~~~~~~syld~~~I  131 (587)
T 3jrx_A           58 KVL-IANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADH----Y-VPVPGGPNNNNYANVELI  131 (587)
T ss_dssp             EEE-ECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSE----E-EECCCSSGGGTTTCHHHH
T ss_pred             EEE-EECChHHHHHHHHHHHHhhhccccccCCceEEEEecccccCcCChhhHhCCE----E-EEeCCCCccccccCHHHH
Confidence            454 5688889999999998775221 00  011111111 122333333334442    1 2222221 1111223567


Q ss_pred             HHHHHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHH
Q psy7785         378 VNACKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD  455 (525)
Q Consensus       378 ~~a~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~  455 (525)
                      ++++++  .+...+....|.  ......+.+++.|+|++  ....+++..+.                  +-..++++|+
T Consensus       132 l~~a~~--~~vdaV~pG~GflsEn~~~a~~le~~Gi~~i--Gp~~~ai~~~~------------------DK~~ak~ll~  189 (587)
T 3jrx_A          132 VDIAKR--IPVQAVWAGWGHASENPKLPELLCKNGVAFL--GPPSEAMWALG------------------DKIASTVVAQ  189 (587)
T ss_dssp             HHHHHH--TTCSEEECCSSTTTTCTHHHHHHHTTTCEES--SCCHHHHHHHC------------------SHHHHHHHHH
T ss_pred             HHHHHH--hCCCEEEeCCCccccCHHHHHHHHHCCCCee--CCCHHHHHHhC------------------CHHHHHHHHH
Confidence            777776  344333222232  22334578889999988  55556665542                  2457899999


Q ss_pred             HCCCCe---EE-----------------------------EcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785         456 ESKLPL---IF-----------------------------ASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR  500 (525)
Q Consensus       456 ayGIpv---~l-----------------------------A~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~  500 (525)
                      ++|||+   ..                             +.+.+++.+   .++++  |||||+|-....-.+|.+
T Consensus       190 ~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~---~a~~i--GyPvVVKp~~GgGGkGv~  261 (587)
T 3jrx_A          190 TLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLE---AAERI--GFPLMIKASEGGGGKGIR  261 (587)
T ss_dssp             HTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHH---HHHHH--CSSEEEEETTCCSSSSEE
T ss_pred             HcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHH---HHHhc--CCeEEEEeCCCCCCCCeE
Confidence            999999   22                             667888877   46674  999999997766444433

>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A

Probab=96.42  E-value=0.0087  Score=59.09  Aligned_cols=82  Identities=12%  Similarity=0.180  Sum_probs=61.1

Q ss_pred             CCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeC-CcccHHHHHHHHhccccccccCCCC
Q psy7785          23 HSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN-NVQDIPPILEKMIGHKLITKQTPKT  101 (525)
Q Consensus        23 pvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~-~~eea~~a~~~l~~~~~~~~~~~~~  101 (525)
                      |+|++.++++.+++.++++++|  |+|+|+..-.+|  +         ||.+.. +.+++.++++.+...          
T Consensus       134 ~~P~t~~~~~~~~~~~~~~~~~--p~vvKP~~g~~g--~---------Gv~~v~~~~~~l~~~~~~~~~~----------  190 (316)
T 1gsa_A          134 LTPETLVTRNKAQLKAFWEKHS--DIILKPLDGMGG--A---------SIFRVKEGDPNLGVIAETLTEH----------  190 (316)
T ss_dssp             TSCCEEEESCHHHHHHHHHHHS--SEEEECSSCCTT--T---------TCEEECTTCTTHHHHHHHHTTT----------
T ss_pred             cCCCeEEeCCHHHHHHHHHHcC--CEEEEECCCCCc--c---------cEEEecCChHHHHHHHHHHHhc----------
Confidence            9999999999999999888886  899999654332  3         677776 788888776664211          


Q ss_pred             CcccCeEEEEeeeCC--ceeEEEEEEEcCCC
Q psy7785         102 GINVNKVMVAKSVNI--TRETYFCIVQDRLH  130 (525)
Q Consensus       102 g~~~~~vlVee~~~~--~~E~~vgv~~D~~f  130 (525)
                      +  ...++||+++++  +.|+.+.+. +...
T Consensus       191 ~--~~~~lvqe~i~~~~~~~~~v~~~-~g~~  218 (316)
T 1gsa_A          191 G--TRYCMAQNYLPAIKDGDKRVLVV-DGEP  218 (316)
T ss_dssp             T--TSCEEEEECCGGGGGCEEEEEEE-TTEE
T ss_pred             C--CceEEEecccCCCCCCCEEEEEE-CCEE
Confidence            1  146999999986  688888775 4444

>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}

Probab=96.23  E-value=0.019  Score=61.33  Aligned_cols=101  Identities=8%  Similarity=0.113  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHHhcCCCCcEEEEeCCc-chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHH
Q psy7785         370 CATIAKGLVNACKSFKLSIPLVVRLEGT-NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQ  448 (525)
Q Consensus       370 ~~~ia~~i~~a~~~~~~~kPivv~~~g~-~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~  448 (525)
                      .....+.|.+++++  .+...++. ... ......+.+++.|+| .  .+++. +..+                  .+-.
T Consensus        87 ~~~~i~~I~~~a~~--~~id~Vip-~sE~~l~~~a~~~e~~Gi~-g--~~~~a-i~~~------------------~DK~  141 (474)
T 3vmm_A           87 EEEVVEQIVKVAEM--FGADAITT-NNELFIAPMAKACERLGLR-G--AGVQA-AENA------------------RDKN  141 (474)
T ss_dssp             HHHHHHHHHHHHHH--TTCSEEEE-SCGGGHHHHHHHHHHTTCC-C--SCHHH-HHHT------------------TCHH
T ss_pred             hHHHHHHHHHHHHH--cCCCEEEE-CCcccHHHHHHHHHHcCCC-C--CCHHH-HHHh------------------hCHH
Confidence            34566788887776  34444443 222 224456677888998 5  55442 2211                  2345


Q ss_pred             HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785         449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR  500 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~  500 (525)
                      ..+++|+++|||+   ..+.+.+++.+   .++++  |||||+|-....-..|-.
T Consensus       142 ~~k~~l~~~GIpvp~~~~v~s~ee~~~---~~~~l--g~PvVVKP~~g~gg~Gv~  191 (474)
T 3vmm_A          142 KMRDAFNKAGVKSIKNKRVTTLEDFRA---ALEEI--GTPLILKPTYLASSIGVT  191 (474)
T ss_dssp             HHHHHHHHTTSCCCCEEEECSHHHHHH---HHHHS--CSSEEEEESSCCTTTTCE
T ss_pred             HHHHHHHHcCCCCCCeEEECCHHHHHH---HHHHc--CCCEEEEECCCCcCceEE
Confidence            7899999999999   78899999887   46674  999999987765444433

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=96.20  E-value=0.0064  Score=72.05  Aligned_cols=164  Identities=15%  Similarity=0.165  Sum_probs=67.2

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC  381 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~  381 (525)
                      ++|. |.|+|-.+...+-+|.+.|.++   +=+..+.  +......+  ..|    -.+..-...........+.|++++
T Consensus        32 kkIL-I~grGeia~~iiraar~lGi~v---VaV~s~~--d~~a~~~~--~AD----e~~~i~p~~~~~syld~~~Il~~a   99 (1236)
T 3va7_A           32 ETVL-IANRGEIAVRIMKTLKRMGIKS---VAVYSDP--DKYSQHVT--DAD----FSVALHGRTAAETYLDIDKIINAA   99 (1236)
T ss_dssp             SEEE-ECCCHHHHHHHHHHHHHHTCEE---EEEECSG--GGGCHHHH--HSS----EEEECCCSSTTTTTTCHHHHHHHH
T ss_pred             CEEE-EEcCCHHHHHHHHHHHHCCCEE---EEEEcCC--CcCchhhh--hCC----EEEEeCCCcccccccCHHHHHHHH
Confidence            3555 4678899999999999999862   1111111  11111111  222    222211111111111234666666


Q ss_pred             HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785         382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL  459 (525)
Q Consensus       382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI  459 (525)
                      ++  .+...++...|.  +.....+.+++.|+|++  ....+++..+..                  -..++++|+++||
T Consensus       100 ~~--~~iDaI~pg~g~lsEn~~~a~~le~~Gi~~i--Gps~eai~~~~D------------------K~~ak~ll~~aGI  157 (1236)
T 3va7_A          100 KK--TGAQAIIPGYGFLSENADFSDRCSQENIVFV--GPSGDAIRKLGL------------------KHSAREIAERAKV  157 (1236)
T ss_dssp             HH--TTCSEEECCSSGGGGCHHHHHHHHTTTCEES--SCCHHHHHHHHS------------------TTHHHHHHHHTTC
T ss_pred             HH--hCCCEEEECCccccccHHHHHHHHHCCCCee--CCCHHHHHHhcC------------------HHHHHHHHHHcCC
Confidence            66  333344332232  12334577888999987  555555555432                  1268999999999


Q ss_pred             Ce----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785         460 PL----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE  504 (525)
Q Consensus       460 pv----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~  504 (525)
                      |+    .++.+.+++.+   .++++  |||||+|-.+..-.+|-+++..
T Consensus       158 Pvpp~~~~v~s~eea~~---~a~~i--GyPvVVKP~~GgGGkGV~iv~s  201 (1236)
T 3va7_A          158 PLVPGSGLIKDAKEAKE---VAKKL--EYPVMVKSTAGGGGIGLQKVDS  201 (1236)
T ss_dssp             CCCC---------------------------------------------
T ss_pred             CCCCeeEecCCHHHHHH---HHHHc--CCCEEEEeCCCCCCCCEEEECC
Confidence            98    46788888887   46674  9999999988776666665543

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=96.08  E-value=0.007  Score=67.59  Aligned_cols=159  Identities=13%  Similarity=0.125  Sum_probs=65.4

Q ss_pred             EecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-ccChHHHHHHHHHHHHhcC
Q psy7785         307 LVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-IVNCATIAKGLVNACKSFK  385 (525)
Q Consensus       307 itnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~~~~~~ia~~i~~a~~~~~  385 (525)
                      |.|+|-.+...+.+|.+.|.+.-= ++-..+......      -+.|..   +.  +.+. ........+.|++++++. 
T Consensus         7 IanrGeia~riiraar~lGi~~va-v~sd~d~~a~~~------~~aD~~---~~--i~p~~~~~syld~~~i~~~a~~~-   73 (681)
T 3n6r_A            7 IANRGEIACRVIKTARKMGISTVA-IYSDADKQALHV------QMADEA---VH--IGPPPANQSYIVIDKVMAAIRAT-   73 (681)
T ss_dssp             BSCCHHHHHHHHHHHGGGSCCBCC-EECSTTSSCHHH------HHSSCC---EE--CSSSSGGGTTSCHHHHHHHHHHT-
T ss_pred             EECCcHHHHHHHHHHHHcCCEEEE-EEcCCCCCChhH------HhCCEE---EE--cCCCCcccCccCHHHHHHHHHHh-
Confidence            468999999999999999986321 111122221111      123321   12  1111 111111234666666652 


Q ss_pred             CCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe--
Q psy7785         386 LSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL--  461 (525)
Q Consensus       386 ~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv--  461 (525)
                       +...+....|.  ......+.+++.|+|++  ....+++..+                  .+-..++++|+++|||+  
T Consensus        74 -~~daI~pg~gflsE~~~~a~~le~~Gi~~i--Gp~~~ai~~~------------------~dK~~~k~~l~~~GVPvpp  132 (681)
T 3n6r_A           74 -GAQAVHPGYGFLSENSKFAEALEAEGVIFV--GPPKGAIEAM------------------GDKITSKKIAQEANVSTVP  132 (681)
T ss_dssp             -CCSCCBCCSSSSTTCHHHHHHHHTTTCCCS--SSCHHHHHHT------------------TSHHHHHHHHHTTTCCCCC
T ss_pred             -CcCEEEECCCccccCHHHHHHHHHcCCceE--CCCHHHHHHh------------------CCHHHHHHHHHHcCcCcCC
Confidence             22233221221  22345678889999987  5444555433                  23457899999999998  


Q ss_pred             ---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785         462 ---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE  504 (525)
Q Consensus       462 ---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~  504 (525)
                         ..+.+.+++.+   .++++  |||||+|-....-.+|-+++..
T Consensus       133 ~~~~~~~s~~e~~~---~a~~i--gyPvVvKp~~ggggkGv~iv~~  173 (681)
T 3n6r_A          133 GYMGLIEDADEAVK---ISNQI--GYPVMIKASAGGGGKGMRIAWN  173 (681)
T ss_dssp             C---------------------------------------------
T ss_pred             ccccCcCCHHHHHH---HHHhc--CCcEEEEECCCCCCCCEEEECC
Confidence               26788888887   46674  9999999988877777766654

>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=95.98  E-value=0.055  Score=56.82  Aligned_cols=151  Identities=11%  Similarity=0.152  Sum_probs=84.7

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHH--HHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATI--AKGLVN  379 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~i--a~~i~~  379 (525)
                      .+|.|+ ++|..+...+.++.+.|.++- -+|-..+... ..   .+.  .    |..++ +...  .....  .+.|.+
T Consensus         3 k~ilI~-g~g~~~~~~~~a~~~~G~~vv-~v~~~~~~~~-~~---~~~--a----d~~~~-~~p~--~~~~~~d~~~l~~   67 (451)
T 1ulz_A            3 NKVLVA-NRGEIAVRIIRACKELGIPTV-AIYNEVESTA-RH---VKL--A----DEAYM-IGTD--PLDTYLNKQRIIN   67 (451)
T ss_dssp             SSEEEC-CCHHHHHHHHHHHHHHTCCEE-EEECGGGTTC-HH---HHH--S----SEEEE-CCSS--TTHHHHCHHHHHH
T ss_pred             ceEEEE-CCcHHHHHHHHHHHHcCCeEE-EEechhhccc-ch---hhh--C----cEEEE-cCCC--cccccCCHHHHHH
Confidence            356665 577889999999999998631 0111111111 11   111  1    22222 1111  11111  256677


Q ss_pred             HHHhcCCCCcEEEEeCC--cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHC
Q psy7785         380 ACKSFKLSIPLVVRLEG--TNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDES  457 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g--~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ay  457 (525)
                      .+++.  +.-.++...|  .......+.+++.|+|++  ....+++....                  +-...+++|+++
T Consensus        68 ~~~~~--~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~  125 (451)
T 1ulz_A           68 LALEV--GADAIHPGYGFLAENAEFAKMCEEAGITFI--GPHWKVIELMG------------------DKARSKEVMKKA  125 (451)
T ss_dssp             HHHHT--TCCEEECCSSTTTTCHHHHHHHHHTTCEES--SSCHHHHHHHH------------------SHHHHHHHHHHT
T ss_pred             HHHHc--CCCEEEECCCccccCHHHHHHHHHCCCeEE--CcCHHHHHHhc------------------CHHHHHHHHHHc
Confidence            66652  2223332222  112233567788999977  44344444332                  123689999999


Q ss_pred             CCCe---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         458 KLPL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       458 GIpv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      |||+   .  .+.+.+++.+   .++++  |||||+|-.+..
T Consensus       126 gip~p~~~~~~~~~~~~~~~---~~~~~--g~PvvvKp~~g~  162 (451)
T 1ulz_A          126 GVPVVPGSDGVLKSLEEAKA---LAREI--GYPVLLKATAGG  162 (451)
T ss_dssp             TCCBCCBCSSSCCCHHHHHH---HHHHH--CSSEEEEECSSS
T ss_pred             CCCCCCCcccccCCHHHHHH---HHHHc--CCCEEEEECCCC
Confidence            9998   3  5778888887   45564  999999987654

>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*

Probab=95.88  E-value=0.0095  Score=60.08  Aligned_cols=81  Identities=12%  Similarity=0.076  Sum_probs=56.3

Q ss_pred             hCCC---CCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785          19 VSTV---HSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        19 ~~GI---pvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~   95 (525)
                      +.|+   |.++.....+..+   +.+.+|| |+|+|+-.  |+.|+         ||.+..+.++++..++.+...    
T Consensus       127 ~~gi~~~P~~~~~~~~~~~~---~~~~~g~-PvVvK~~~--Gs~G~---------GV~lv~~~~~~~~~~~~~~~~----  187 (309)
T 1i7n_A          127 TLGGEKFPLIEQTYYPNHRE---MLTLPTF-PVVVKIGH--AHSGM---------GKVKVENHYDFQDIASVVALT----  187 (309)
T ss_dssp             HHCTTTSCBCCCEEESSGGG---GSSCCCS-SEEEEESS--CSTTT---------TEEEECSHHHHHHHHHHHHHH----
T ss_pred             hCCCCCCCCCCEEeeCChhh---hhhccCC-CEEEEeCC--CCcee---------CeEEECCHHHHHHHHHHHhcc----
Confidence            4666   8666555555544   4567887 99999843  33344         788999988888777655321    


Q ss_pred             ccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785          96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQD  127 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D  127 (525)
                               -.-+++|||++.++.+.+.+.-+
T Consensus       188 ---------~~~~~vQefI~~g~DiRv~VvGg  210 (309)
T 1i7n_A          188 ---------QTYATAEPFIDAKYDIRVQKIGN  210 (309)
T ss_dssp             ---------TCCEEEEECCCEEEEEEEEEETT
T ss_pred             ---------CCeEEEEeecCCCceEEEEEECC
Confidence                     13488999999888888888733

>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}

Probab=95.68  E-value=0.15  Score=53.33  Aligned_cols=152  Identities=11%  Similarity=0.068  Sum_probs=83.9

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-ccChHHHHHHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-IVNCATIAKGLVNAC  381 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~~~~~~ia~~i~~a~  381 (525)
                      +|.| .++|..+...+.++.+.|.++- -+|-..+....    ..+.  .    |-.++.-+.. ..+.. -.+.|.+.+
T Consensus         3 ~ilI-~g~g~~~~~i~~a~~~~G~~vv-~v~~~~~~~~~----~~~~--a----d~~~~i~~~~~~~~~~-d~~~l~~~~   69 (451)
T 2vpq_A            3 KVLI-ANRGEIAVRIIRACRDLGIQTV-AIYSEGDKDAL----HTQI--A----DEAYCVGPTLSKDSYL-NIPNILSIA   69 (451)
T ss_dssp             EEEE-CCCHHHHHHHHHHHHHTTCEEE-EEEEGGGTTCH----HHHH--S----SEEEEEECSSGGGTTT-CHHHHHHHH
T ss_pred             eEEE-eCCCHHHHHHHHHHHHcCCEEE-EEecccccccc----hhhh--C----CEEEEcCCCCcccccc-CHHHHHHHH
Confidence            4554 5688899999999999998531 11211111111    1111  1    2222211110 01111 124566666


Q ss_pred             HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785         382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL  459 (525)
Q Consensus       382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI  459 (525)
                      ++.  +.-+++...|.  ......+.+++.|+|++  ....+++....                  +-...+++|+++||
T Consensus        70 ~~~--~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gi  127 (451)
T 2vpq_A           70 TST--GCDGVHPGYGFLAENADFAELCEACQLKFI--GPSYQSIQKMG------------------IKDVAKAEMIKANV  127 (451)
T ss_dssp             HHT--TCSEEECCSSTTTTCHHHHHHHHTTTCEES--SSCHHHHHHHH------------------SHHHHHHHHHHTTC
T ss_pred             HHc--CCCEEEECCCccccCHHHHHHHHHcCCeEE--CCCHHHHHHhc------------------CHHHHHHHHHHcCC
Confidence            552  22234332231  12234567788999977  43334443332                  23468999999999


Q ss_pred             Ce---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         460 PL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       460 pv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      |+   .  .+.+.+++.+   .++++  |||||+|-.+..
T Consensus       128 p~p~~~~~~~~~~~~~~~---~~~~~--g~PvvvKp~~g~  162 (451)
T 2vpq_A          128 PVVPGSDGLMKDVSEAKK---IAKKI--GYPVIIKATAGG  162 (451)
T ss_dssp             CBCSBCSSCBSCHHHHHH---HHHHH--CSSEEEEETTCC
T ss_pred             CcCCCcccCcCCHHHHHH---HHHhc--CCcEEEEECCCC
Confidence            99   4  6788888877   45564  999999987654

>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X

Probab=95.52  E-value=0.011  Score=60.53  Aligned_cols=78  Identities=14%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             CCCCCCCccccCC--HHHHHHHHH--hcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785          20 STVHSTDKVCLED--ARTATNILK--DLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        20 ~GIpvp~~~~~~~--~eea~~~a~--~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~   95 (525)
                      .|||+|++.++.+  ++++.+..+  .+|| |+|+|+..-.|+.         .-||.+..+.+++..         +  
T Consensus       134 ~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~-P~VvKP~~g~Gs~---------s~~v~~v~~~~~l~~---------~--  192 (346)
T 2q7d_A          134 DRICSPPFMELTSLCGDDTMRLLEKNGLTF-PFICKTRVAHGTN---------SHEMAIVFNQEGLNA---------I--  192 (346)
T ss_dssp             TTEECCCEEEECSCCCTTHHHHHHHTTCCS-SEEEECSBCSSTT---------CCEEEEECSGGGTTC------------
T ss_pred             CCCCCCCEEEEeCCCHHHHHHHHHhcCCCC-CEEEEecCCCcce---------eeeeEEecCHHHHHh---------c--
Confidence            4999999999986  356666554  5786 9999995333221         237778777666442         1  


Q ss_pred             ccCCCCCcccCeEEEEeeeCC-ceeEEEEEEEc
Q psy7785          96 KQTPKTGINVNKVMVAKSVNI-TRETYFCIVQD  127 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~-~~E~~vgv~~D  127 (525)
                               -..++||||+++ +.++-+.+.-|
T Consensus       193 ---------~~~~lvQefI~~~G~dirv~VvG~  216 (346)
T 2q7d_A          193 ---------QPPCVVQNFINHNAVLYKVFVVGE  216 (346)
T ss_dssp             ----------CCEEEEECCCCTTEEEEEEEETT
T ss_pred             ---------CCCEEEEEeeCCCCeEEEEEEECC
Confidence                     124899999974 78999988744

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=95.13  E-value=0.05  Score=55.74  Aligned_cols=144  Identities=15%  Similarity=0.092  Sum_probs=81.7

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC  381 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~  381 (525)
                      .+|.|+ ++|..|...+.++.+.|..+ --+|...+...      ..  .    .|..+. .  ...+.    +.+.+.+
T Consensus        12 ~~ili~-g~g~~~~~~~~a~~~~G~~v-~~~~~~~~~~~------~~--~----~d~~~~-~--~~~d~----~~l~~~~   70 (391)
T 1kjq_A           12 TRVMLL-GSGELGKEVAIECQRLGVEV-IAVDRYADAPA------MH--V----AHRSHV-I--NMLDG----DALRRVV   70 (391)
T ss_dssp             CEEEEE-SCSHHHHHHHHHHHTTTCEE-EEEESSTTCGG------GG--G----SSEEEE-C--CTTCH----HHHHHHH
T ss_pred             CEEEEE-CCCHHHHHHHHHHHHcCCEE-EEEECCCCCch------hh--h----ccceEE-C--CCCCH----HHHHHHH
Confidence            478887 55667888889999988742 22333222110      00  1    122222 1  11222    3455555


Q ss_pred             HhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHH-HHCCCC
Q psy7785         382 KSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL-DESKLP  460 (525)
Q Consensus       382 ~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL-~ayGIp  460 (525)
                      ++.  +.-+++...+.......+.+++.|++++  ++++. +....                  +-...+++| +++|||
T Consensus        71 ~~~--~~d~v~~~~e~~~~~~~~~l~~~gi~~~--~~~~~-~~~~~------------------dK~~~~~~l~~~~gip  127 (391)
T 1kjq_A           71 ELE--KPHYIVPEIEAIATDMLIQLEEEGLNVV--PCARA-TKLTM------------------NREGIRRLAAEELQLP  127 (391)
T ss_dssp             HHH--CCSEEEECSSCSCHHHHHHHHHTTCEES--SCHHH-HHHHH------------------SHHHHHHHHHTTSCCC
T ss_pred             HHc--CCCEEEECCCcCCHHHHHHHHhCCCCcC--CCHHH-HHHhh------------------CHHHHHHHHHHhCCCC
Confidence            442  2233433333222334566788899766  66543 32221                  123578898 899999


Q ss_pred             e---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         461 L---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       461 v---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      +   ..+.+.+++.+   .++++  |||+|+|-.+..
T Consensus       128 ~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~g~  159 (391)
T 1kjq_A          128 TSTYRFADSESLFRE---AVADI--GYPCIVKPVMSS  159 (391)
T ss_dssp             BCCEEEESSHHHHHH---HHHHH--CSSEEEEESCC-
T ss_pred             CCCeeeeCCHHHHHH---HHHhc--CCCEEEEeCCCC
Confidence            9   77889988877   45564  999999987643

>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}

Probab=95.11  E-value=0.018  Score=58.89  Aligned_cols=81  Identities=10%  Similarity=0.081  Sum_probs=55.3

Q ss_pred             hCCC---CCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785          19 VSTV---HSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        19 ~~GI---pvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~   95 (525)
                      +.|+   |.++.....+..+   +.+.+|| |+|+|+-.  |+.|+         ||.+..+.++++..++.+...    
T Consensus       144 ~~gi~~~P~~~~t~~~~~~~---~~~~~g~-PvVvK~~~--Gs~G~---------GV~lve~~~~~~~~~~~~~~~----  204 (344)
T 2p0a_A          144 SLGPEKFPLVEQTFFPNHKP---MVTAPHF-PVVVKLGH--AHAGM---------GKIKVENQLDFQDITSVVAMA----  204 (344)
T ss_dssp             HHCTTTSCBCCCEEESSSTT---CCCCSSS-SEEEEESS--CCTTT---------TEEEECSHHHHHHHHHHHHHH----
T ss_pred             HCCCCCCCCCCEEecCchhh---hhhccCC-CEEEEeCC--CCcee---------CeEEECCHHHHHHHHHHHhcc----
Confidence            4566   8655555555443   4557887 99999853  33344         788888988888776654321    


Q ss_pred             ccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785          96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQD  127 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D  127 (525)
                               -.-+++|||++.++.+.+.+.-+
T Consensus       205 ---------~~~~~vQefI~~g~DiRv~VVGg  227 (344)
T 2p0a_A          205 ---------KTYATTEAFIDSKYDIRIQKIGS  227 (344)
T ss_dssp             ---------TCCEEEEECCCEEEEEEEEEETT
T ss_pred             ---------CCeEEEEeccCCCccEEEEEECC
Confidence                     13478999999888888888733

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=95.03  E-value=0.084  Score=55.04  Aligned_cols=149  Identities=15%  Similarity=0.146  Sum_probs=82.0

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC  381 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~  381 (525)
                      .+|.|+ ++|..|...+.++.+.|..+ -.+|...+. +     ....  .    |-.++   ....+.    +.+.+.+
T Consensus        20 ~~ili~-g~g~~g~~~~~a~~~~G~~v-~~v~~~~~~-~-----~~~~--a----d~~~~---~~~~d~----~~l~~~~   78 (433)
T 2dwc_A           20 QKILLL-GSGELGKEIAIEAQRLGVEV-VAVDRYANA-P-----AMQV--A----HRSYV---GNMMDK----DFLWSVV   78 (433)
T ss_dssp             CEEEEE-SCSHHHHHHHHHHHHTTCEE-EEEESSTTC-H-----HHHH--S----SEEEE---SCTTCH----HHHHHHH
T ss_pred             CEEEEE-CCCHHHHHHHHHHHHCCCEE-EEEECCCCC-h-----hhhh--c----ceEEE---CCCCCH----HHHHHHH
Confidence            478887 45667888889999988753 122322221 1     1111  1    22222   112232    3445555


Q ss_pred             HhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHH-HHCCCC
Q psy7785         382 KSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL-DESKLP  460 (525)
Q Consensus       382 ~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL-~ayGIp  460 (525)
                      ++.  +.-+++...+.......+.+++.|+++.  ++++. +....                  +-...+++| +++|||
T Consensus        79 ~~~--~~d~V~~~~e~~~~~~~~~l~~~gi~~~--~~~~~-~~~~~------------------dK~~~k~~l~~~~gip  135 (433)
T 2dwc_A           79 ERE--KPDAIIPEIEAINLDALFEFEKDGYFVV--PNARA-TWIAM------------------HRERLRETLVKEAKVP  135 (433)
T ss_dssp             HHH--CCSEEEECSSCSCHHHHHHHHHTTCCBS--SCHHH-HHHHH------------------CHHHHHHHHHHTSCCC
T ss_pred             HHc--CCCEEEECcccCCHHHHHHHHhcCCeeC--CCHHH-HHHhh------------------CHHHHHHHHHHhcCCC
Confidence            432  2223433333222344567888899766  66442 22221                  123578898 899999


Q ss_pred             e---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHH
Q psy7785         461 L---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGK  499 (525)
Q Consensus       461 v---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~  499 (525)
                      +   ..+.+.+++.+   .++++  |||+|+|-.+..-.+|-
T Consensus       136 ~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~g~gg~Gv  172 (433)
T 2dwc_A          136 TSRYMYATTLDELYE---ACEKI--GYPCHTKAIMSSSGKGS  172 (433)
T ss_dssp             CCCEEEESSHHHHHH---HHHHH--CSSEEEEECCC------
T ss_pred             CCCeeEeCCHHHHHH---HHHhc--CCCEEEEECCCcCCCCe
Confidence            9   77889888877   45564  99999999875544443

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*

Probab=94.97  E-value=0.024  Score=59.28  Aligned_cols=81  Identities=11%  Similarity=0.112  Sum_probs=55.6

Q ss_pred             hCCC---CCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785          19 VSTV---HSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        19 ~~GI---pvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~   95 (525)
                      +.|+   |.++.....+..+   +.+.+|| |+|+|+-.  |+.|+         ||.+..+.++++..++.+...    
T Consensus       239 ~~gi~~iP~t~~t~~~~~~~---~i~~~g~-PvVvKp~~--GS~G~---------GV~lve~~~~l~~ii~~~~~~----  299 (422)
T 1pk8_A          239 KLGTEEFPLIDQTFYPNHKE---MLSSTTY-PVVVKMGH--AHSGM---------GKVKVDNQHDFQDIASVVALT----  299 (422)
T ss_dssp             HHCTTTSCBCCCEEESSGGG---CCCCSSS-SEEEEESS--CCTTT---------TEEEECSHHHHHHHHHHHHHH----
T ss_pred             hCCCCCCCCCceEecCchhh---hhhccCC-CEEEEeCC--CCcee---------CeEEeCCHHHHHHHHHHHhcc----
Confidence            4566   8555555555443   4566787 99999853  33344         788998988888777655321    


Q ss_pred             ccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785          96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQD  127 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D  127 (525)
                               -.-++||||++.++.+.+.+.-+
T Consensus       300 ---------~~~~~vQEfI~~g~DIRv~VVGg  322 (422)
T 1pk8_A          300 ---------KTYATAEPFIDAKYDVRVQKIGQ  322 (422)
T ss_dssp             ---------TSCEEEEECCCEEEEEEEEEETT
T ss_pred             ---------CceEEEEeecCCCceEEEEEECC
Confidence                     13479999999888888888733

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*

Probab=94.92  E-value=0.023  Score=58.23  Aligned_cols=67  Identities=18%  Similarity=0.284  Sum_probs=46.7

Q ss_pred             HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChh----HHHHHHHH
Q psy7785         404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLD----EAASLVNA  476 (525)
Q Consensus       404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~d----eAv~~~~a  476 (525)
                      ..|+..|+|++  .+...++....                  +-...|++|+++|||+   ..+.+.+    ++.+   .
T Consensus       118 ~~le~~gip~~--G~~~~a~~~~~------------------DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~---~  174 (364)
T 3i12_A          118 GMLRVANLPFV--GSDVLSSAACM------------------DKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAE---V  174 (364)
T ss_dssp             HHHHHTTCCBS--SCCHHHHHHHH------------------CHHHHHHHHHHTTCCBCCEEEEETTTGGGCCHHH---H
T ss_pred             HHHHHcCCCcc--CCCHHHHHHHH------------------CHHHHHHHHHHCCCCCCCEEEEEccccchhhHHH---H
Confidence            46778899988  54444443321                  2346899999999999   6666665    5555   3


Q ss_pred             hhhcCCCCcEEEEEecCCh
Q psy7785         477 CKSFKLSIPLVVRLEGTNV  495 (525)
Q Consensus       477 a~~~~~G~PVVlKi~~~~~  495 (525)
                      ++++  |||||+|-....-
T Consensus       175 ~~~l--g~PvvVKP~~ggs  191 (364)
T 3i12_A          175 ESRL--GLPLFVKPANQGS  191 (364)
T ss_dssp             HHHH--CSSEEEEETTCCT
T ss_pred             HHhc--CCCEEEEECCCCC
Confidence            4564  9999999876653

>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A

Probab=94.80  E-value=0.074  Score=55.92  Aligned_cols=67  Identities=15%  Similarity=0.193  Sum_probs=48.3

Q ss_pred             HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785         402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK  478 (525)
Q Consensus       402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~  478 (525)
                      ..+.|++.|+|++  ....+++....                  +-...+++|+++|||+   ..+.+.+++.+   .++
T Consensus        99 ~~~~l~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~  155 (451)
T 2yrx_A           99 IVDRFMAEGLRIF--GPSQRAALIEG------------------SKAFAKELMKKYGIPTADHAAFTSYEEAKA---YIE  155 (451)
T ss_dssp             HHHHHHHTTCCEE--SCCHHHHHHHH------------------CHHHHHHHHHHTTCCBCCEEEESCHHHHHH---HHH
T ss_pred             HHHHHHHCCCCEe--CccHHHHHHhh------------------CHHHHHHHHHHcCCCCCCeEEECCHHHHHH---HHH
Confidence            3556788999988  44444443332                  2336789999999999   77889998877   345


Q ss_pred             hcCCCCcEEEEEecC
Q psy7785         479 SFKLSIPLVVRLEGT  493 (525)
Q Consensus       479 ~~~~G~PVVlKi~~~  493 (525)
                      ++  |||+|+|-...
T Consensus       156 ~~--~~PvVvKp~~~  168 (451)
T 2yrx_A          156 QK--GAPIVIKADGL  168 (451)
T ss_dssp             HH--CSSEEEEECC-
T ss_pred             hc--CCcEEEEeCCC
Confidence            64  99999998765

>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}

Probab=94.77  E-value=0.067  Score=55.51  Aligned_cols=67  Identities=18%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785         402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK  478 (525)
Q Consensus       402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~  478 (525)
                      ..+.+++.|+|++  ....+++....                  +-...+++|+++|||+   ..+.+.+++.+   .++
T Consensus        77 ~~~~l~~~gi~~~--g~~~~~~~~~~------------------dK~~~~~~l~~~gip~p~~~~~~~~~~~~~---~~~  133 (417)
T 2ip4_A           77 IADAFQARGLLLF--GPTQKAAMIEG------------------SKAFAKGLMERYGIPTARYRVFREPLEALA---YLE  133 (417)
T ss_dssp             HHHHHHHHTCCEE--SCCHHHHHHHH------------------CHHHHHHHHHHTCCCBCCEEEESSHHHHHH---HHH
T ss_pred             HHHHHHHCCCCEE--CccHHHHHHHc------------------CHHHHHHHHHHcCCCCCCeeeeCCHHHHHH---HHH
Confidence            4566778899988  55455554332                  2346889999999999   67889998887   345


Q ss_pred             hcCCCCcEEEEEecC
Q psy7785         479 SFKLSIPLVVRLEGT  493 (525)
Q Consensus       479 ~~~~G~PVVlKi~~~  493 (525)
                      ++  |||+|+|-.+.
T Consensus       134 ~~--~~P~vvKp~~~  146 (417)
T 2ip4_A          134 EV--GVPVVVKDSGL  146 (417)
T ss_dssp             HH--CSSEEEECTTS
T ss_pred             Hc--CCCEEEEECCC
Confidence            64  99999998654

>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9

Probab=94.71  E-value=0.0059  Score=61.91  Aligned_cols=81  Identities=11%  Similarity=0.154  Sum_probs=46.7

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      +.|||+|++.-   ++++     +++| ||+||+....+  ||         |+.+..| +|+..+++++          
T Consensus       108 ~~Gip~P~~~~---~ee~-----~i~~-PviVKp~~g~g--gk---------G~~~v~~-eel~~~~~~~----------  156 (320)
T 2pbz_A          108 GAGIPRVEVVE---PEDA-----KPDE-LYFVRIEGPRG--GS---------GHFIVEG-SELEERLSTL----------  156 (320)
T ss_dssp             HHTCCBCCBCC---SCCC-----CSSC-CEEEECC-----------------------C-EECSCCCC------------
T ss_pred             HCCcCCCCeeC---HhHc-----CcCC-cEEEEECCCCC--CC---------CEEEECh-HHHHHHHHhc----------
Confidence            79999999872   4443     5787 99999964434  34         6777778 8765432221          


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                         +   ..++||||++ +.+.+..+..++.. |-+.+++
T Consensus       157 ---~---~~~IiEEfI~-g~~~~~~~f~~~~~-g~~e~~~  188 (320)
T 2pbz_A          157 ---E---EPYRVERFIP-GVYLYVHFFYSPIL-ERLELLG  188 (320)
T ss_dssp             --------CCEEEECCC-SCEEEEEEEEETTT-TEEEEEE
T ss_pred             ---C---CCEEEEeeec-eEecceeEEecccc-CceeEEE
Confidence               1   3589999998 57777666777665 4455555

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*

Probab=94.59  E-value=0.036  Score=57.47  Aligned_cols=70  Identities=16%  Similarity=0.324  Sum_probs=46.9

Q ss_pred             HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChh----HHHHHHHH
Q psy7785         404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLD----EAASLVNA  476 (525)
Q Consensus       404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~d----eAv~~~~a  476 (525)
                      ..|+..|+|++  .+...++....                  +-...|++|+++|||+   .++.+.+    ++.+   .
T Consensus       137 ~lle~~gipy~--G~~~~a~~~~~------------------DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~---~  193 (386)
T 3e5n_A          137 GLLRMANLPFV--GSGVLGSAVAM------------------DKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDT---L  193 (386)
T ss_dssp             HHHHHTTCCBS--SCCHHHHHHHH------------------BHHHHHHHHHHTTCCBCCEEEEEHHHHTTCCHHH---H
T ss_pred             HHHHHcCCCcc--CCCHHHHHHHh------------------CHHHHHHHHHHCCCCCCCEEEEeCcccchhhHHH---H
Confidence            46778899987  54433333321                  1336899999999999   5666665    5555   3


Q ss_pred             hhhcCCCCcEEEEEecCChHHH
Q psy7785         477 CKSFKLSIPLVVRLEGTNVQEG  498 (525)
Q Consensus       477 a~~~~~G~PVVlKi~~~~~~~~  498 (525)
                      ++++  |||||+|-....-..|
T Consensus       194 ~~~l--g~PvvVKP~~ggss~G  213 (386)
T 3e5n_A          194 IAQL--GLPLFVKPANQGSSVG  213 (386)
T ss_dssp             HHHH--CSSEEEEESBSCSSTT
T ss_pred             HHhc--CCCEEEEECCCCcCCC
Confidence            4564  9999999876654333

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=94.54  E-value=0.089  Score=54.64  Aligned_cols=141  Identities=14%  Similarity=0.128  Sum_probs=83.3

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNA  380 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a  380 (525)
                      +.+|+|+. ||..|.+.+.++.+.|.++ --+| ..+.....+        .|. .. .+   .....+.    +.+.+.
T Consensus        24 ~~~I~ilG-gG~lg~~l~~aa~~lG~~v-~~~d-~~~~p~~~~--------ad~-~~-~~---~~~~~d~----~~l~~~   83 (403)
T 3k5i_A           24 SRKVGVLG-GGQLGRMLVESANRLNIQV-NVLD-ADNSPAKQI--------SAH-DG-HV---TGSFKER----EAVRQL   83 (403)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHTCEE-EEEE-STTCTTGGG--------CCS-SC-CE---ESCTTCH----HHHHHH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCEE-EEEE-CCCCcHHHh--------ccc-cc-ee---ecCCCCH----HHHHHH
Confidence            45787775 5679999999999999863 2334 333322211        121 01 11   1122232    244444


Q ss_pred             HHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCC
Q psy7785         381 CKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLP  460 (525)
Q Consensus       381 ~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIp  460 (525)
                      ++.  .+  +++.-...-..+..+.|++ |+|++  ++++. +...                  .+-...|++|+++|||
T Consensus        84 a~~--~d--~i~~e~e~~~~~~l~~l~~-g~~v~--p~~~a-~~~~------------------~dK~~~k~~l~~~Gip  137 (403)
T 3k5i_A           84 AKT--CD--VVTAEIEHVDTYALEEVAS-EVKIE--PSWQA-IRTI------------------QNKFNQKEHLRKYGIP  137 (403)
T ss_dssp             HTT--CS--EEEESSSCSCHHHHHHHTT-TSEES--SCHHH-HHHH------------------TSHHHHHHHHHTTTCC
T ss_pred             HHh--CC--EEEECCCCCCHHHHHHHHc-CCccC--cCHHH-HHHh------------------cCHHHHHHHHHHCCcC
Confidence            443  22  3332212223455677888 99977  66543 2221                  1234688999999999


Q ss_pred             e---EEEc--ChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785         461 L---IFAS--DLDEAASLVNACKSFKLSIPLVVRLEG  492 (525)
Q Consensus       461 v---~lA~--s~deAv~~~~aa~~~~~G~PVVlKi~~  492 (525)
                      +   ..+.  +.+++.+   +++++  |||+|+|-..
T Consensus       138 ~p~~~~~~~~~~~~~~~---~~~~~--g~P~VvKp~~  169 (403)
T 3k5i_A          138 MAEHRELVENTPAELAK---VGEQL--GYPLMLKSKT  169 (403)
T ss_dssp             BCCEEEESSCCHHHHHH---HHHHH--CSSEEEEESS
T ss_pred             CCCEEEEcCCCHHHHHH---HHHHh--CCCEEEEeCC
Confidence            9   6777  8888877   45564  9999999953

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A

Probab=94.45  E-value=0.033  Score=55.69  Aligned_cols=70  Identities=14%  Similarity=0.110  Sum_probs=45.9

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHH-hh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNA-CK  478 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~a-a~  478 (525)
                      ...|+..|+|++  .+...++....                  +-...+++|+++|||+   .++.+.+++.+.++. .+
T Consensus        84 ~~~le~~gip~~--g~~~~~~~~~~------------------dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~  143 (317)
T 4eg0_A           84 QGALDFYGIRYT--GSGVLGSALGL------------------DKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVA  143 (317)
T ss_dssp             HHHHHHHTCEES--SCCHHHHHHHH------------------CHHHHHHHHHHTTCCCCCEEEEETTSCHHHHHHHHHH
T ss_pred             HHHHHHcCCCee--CcCHHHHHHHh------------------CHHHHHHHHHHCCcCCCCEEEEECchhHHHHHHHHHH
Confidence            356777899987  54444443321                  2346899999999999   677777776653210 14


Q ss_pred             hcCCCCcEEEEEecCC
Q psy7785         479 SFKLSIPLVVRLEGTN  494 (525)
Q Consensus       479 ~~~~G~PVVlKi~~~~  494 (525)
                      ++  |||||+|-....
T Consensus       144 ~~--g~PvvvKP~~~~  157 (317)
T 4eg0_A          144 KL--GLPLFVKPASEG  157 (317)
T ss_dssp             HH--CSCEEEEECC--
T ss_pred             hc--CCCEEEEeCCCC
Confidence            54  999999986654

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=94.44  E-value=0.028  Score=57.23  Aligned_cols=65  Identities=15%  Similarity=0.170  Sum_probs=43.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++.             .+|| |+|||+....+|  +         ||.+..|.+++..         .     
T Consensus       113 ~~gip~~~~~-------------~ig~-P~vvKp~~g~g~--~---------gv~~v~~~~~~~~---------~-----  153 (363)
T 4ffl_A          113 SIGVPTPQDR-------------PSKP-PYFVKPPCESSS--V---------GARIIYDDKDLEG---------L-----  153 (363)
T ss_dssp             HTTCCCCCBS-------------CSSS-CEEEECSSCCTT--T---------TCEEEC------C---------C-----
T ss_pred             hcCCCCCCce-------------ecCC-CEEEEECCCCCC--c---------CeEEeccHHHhhh---------h-----
Confidence            7899998764             3587 999998644332  2         6777777654320         1     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                            ...+++|++++ +.|+.+.+..|..
T Consensus       154 ------~~~~~~ee~i~-g~e~sv~~~~d~~  177 (363)
T 4ffl_A          154 ------EPDTLVEEYVE-GEVVSLEVVGDGS  177 (363)
T ss_dssp             ------CTTCEEEECCC-SEEEEEEEEEESS
T ss_pred             ------ccchhhhhhcc-CcEEEEEEEEECC
Confidence                  24579999997 7899999999864

>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}

Probab=94.31  E-value=0.059  Score=56.80  Aligned_cols=155  Identities=10%  Similarity=0.091  Sum_probs=82.4

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC  381 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~  381 (525)
                      .+|.|+ ++|..+...+.++.+.|.++- -+|...+... ...   +  ..|.   .+.+...........-.+.|.+.+
T Consensus         7 k~ILI~-g~g~~~~~i~~a~~~~G~~vv-~v~~~~~~~~-~~~---~--~ad~---~~~i~~~~~~~~~y~d~~~l~~~~   75 (461)
T 2dzd_A            7 RKVLVA-NRGEIAIRVFRACTELGIRTV-AIYSKEDVGS-YHR---Y--KADE---AYLVGEGKKPIEAYLDIEGIIEIA   75 (461)
T ss_dssp             SEEEEC-SCHHHHHHHHHHHHHHTCEEE-EEECGGGTTC-THH---H--HSSS---EEECSTTSCTTGGGTCHHHHHHHH
T ss_pred             cEEEEE-CCcHHHHHHHHHHHHcCCEEE-EEECCccccc-chh---h--hCCE---EEEcCCCCCccccccCHHHHHHHH
Confidence            467665 667788888999999998531 0111111110 011   1  1221   112110000000001124566666


Q ss_pred             HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785         382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL  459 (525)
Q Consensus       382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI  459 (525)
                      ++  .+.-.++...|.  +.....+.+++.|+|++  ....+++...                  .+-...+++|+++||
T Consensus        76 ~~--~~id~v~~~~g~~~E~~~~~~~~~~~gi~~~--g~~~~~~~~~------------------~dK~~~k~~l~~~Gi  133 (461)
T 2dzd_A           76 KA--HDVDAIHPGYGFLSENIQFAKRCREEGIIFI--GPNENHLDMF------------------GDKVKARHAAVNAGI  133 (461)
T ss_dssp             HH--TTCCEEECCSSSSTTCHHHHHHHHHTTCEES--SCCHHHHHHT------------------TSHHHHHHHHHHTTC
T ss_pred             HH--hCCCEEEECCCccccCHHHHHHHHHcCCEEE--CCCHHHHHHh------------------hCHHHHHHHHHHcCC
Confidence            55  222233322221  12234567788999976  3333333322                  123468999999999


Q ss_pred             Ce---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         460 PL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       460 pv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      |+   .  .+.+.+++.+   .++++  |||||+|-.+..
T Consensus       134 p~p~~~~~~~~~~~~~~~---~~~~~--g~PvvvKp~~g~  168 (461)
T 2dzd_A          134 PVIPGSDGPVDGLEDVVA---FAEAH--GYPIIIKAALGG  168 (461)
T ss_dssp             CBCCBCSSCCSSHHHHHH---HHHHH--CSCEEEEESTTC
T ss_pred             CCCCCcccCcCCHHHHHH---HHHhc--CCcEEEEeCCCC
Confidence            99   3  5788898887   35564  999999997665

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*

Probab=94.18  E-value=0.039  Score=57.95  Aligned_cols=42  Identities=17%  Similarity=0.074  Sum_probs=33.5

Q ss_pred             CHHHHHHHHHHCCC---Ce------EEEcCh---hHHHHHHHHhhhcCCC-CcEEEEEec
Q psy7785         446 NVQEGKRILDESKL---PL------IFASDL---DEAASLVNACKSFKLS-IPLVVRLEG  492 (525)
Q Consensus       446 ~e~eak~LL~ayGI---pv------~lA~s~---deAv~~~~aa~~~~~G-~PVVlKi~~  492 (525)
                      .|+++|+||+.||+   |.      ..+++.   +||++   +++++  | ||||||.+.
T Consensus         7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~---~a~~l--g~~pvVvKaqv   61 (425)
T 3mwd_A            7 SEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQ---DHPWL--LSQNLVVKPDQ   61 (425)
T ss_dssp             CHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHH---HCGGG--GTSCEEEEECS
T ss_pred             hHHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHH---HHHHh--CCCCEEEEecc
Confidence            58999999999999   62      566666   55555   78886  6 999999855

>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.15  E-value=0.01  Score=49.22  Aligned_cols=40  Identities=15%  Similarity=0.352  Sum_probs=32.6

Q ss_pred             HHHHHHHHCCCCe---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785         449 EGKRILDESKLPL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGT  493 (525)
Q Consensus       449 eak~LL~ayGIpv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~  493 (525)
                      ..+++|+++|||+   .  .+.+.+++.+   +++++  |||||+|-...
T Consensus        11 ~~~~~l~~~gip~p~~~~~~~~~~~~~~~---~~~~~--~~P~vvKp~~~   55 (108)
T 2cqy_A           11 ESKLLAKKAEVNTIPGFDGVVKDAEEAVR---IAREI--GYPVMIKASAG   55 (108)
T ss_dssp             CSTTCCCSSCCCCCSCCCSCBSSHHHHHH---HHHHH--CSSEEEEETTS
T ss_pred             HHHHHHHHcCCCCCCCcccccCCHHHHHH---HHHhc--CCCEEEEECCC
Confidence            4678999999998   4  7889998877   45564  99999999764

>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}

Probab=94.02  E-value=0.045  Score=55.86  Aligned_cols=71  Identities=10%  Similarity=0.253  Sum_probs=46.9

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...|+..|||+.  .+...++....                  +-...|++|+++|||+   ....+.+++....+.+++
T Consensus       116 q~~le~~gip~~--G~~~~a~~~~~------------------DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~  175 (357)
T 4fu0_A          116 QGIFELAGIPVV--GCDTLSSALCM------------------DKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEAN  175 (357)
T ss_dssp             HHHHHHTTCCBS--SCCHHHHHHHH------------------CHHHHHHHHHHTTCBCCCEEEEEGGGHHHHHHHHHHH
T ss_pred             HHHHHHCCCcEE--CcCHHHHHHHh------------------CHHHHHHHHHHCCCCCCCEEeecCCChHHHHHHHHHh
Confidence            457889999987  54444333321                  1236899999999999   555555554433345667


Q ss_pred             cCCCCcEEEEEecCCh
Q psy7785         480 FKLSIPLVVRLEGTNV  495 (525)
Q Consensus       480 ~~~G~PVVlKi~~~~~  495 (525)
                      +  |||||+|=....-
T Consensus       176 l--g~PvvVKP~~gg~  189 (357)
T 4fu0_A          176 L--TYPLFIKPVRAGS  189 (357)
T ss_dssp             C--CSSEEEEETTCSS
T ss_pred             c--CCCEEEEECCCCC
Confidence            4  9999999765443

>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...

Probab=93.97  E-value=0.048  Score=57.22  Aligned_cols=149  Identities=11%  Similarity=0.097  Sum_probs=81.4

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc----cccChHHHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG----GIVNCATIAKGLV  378 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~----~~~~~~~ia~~i~  378 (525)
                      +|.|+ ++|..+...+.++.+.|.++- -+|-..+... +   ..+  ..    |-.++.-+.    ...+    .+.|.
T Consensus         4 ~ilI~-g~g~~~~~~~~a~~~~G~~vv-~v~~~~~~~~-~---~~~--~a----d~~~~~~p~~~~~~~~d----~~~l~   67 (449)
T 2w70_A            4 KIVIA-NRGEIALRILRACKELGIKTV-AVHSSADRDL-K---HVL--LA----DETVCIGPAPSVKSYLN----IPAII   67 (449)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHTCEEE-EEEEGGGTTC-H---HHH--HS----SEEEEEECSSGGGTTTC----HHHHH
T ss_pred             eEEEe-CCcHHHHHHHHHHHHcCCeEE-EEeccccccC-c---hhh--hC----CEEEEcCCCCccccccC----HHHHH
Confidence            55554 567889999999999998631 0111111110 1   111  12    222221111    1122    24555


Q ss_pred             HHHHhcCCCCcEEEEeCC--cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHH
Q psy7785         379 NACKSFKLSIPLVVRLEG--TNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE  456 (525)
Q Consensus       379 ~a~~~~~~~kPivv~~~g--~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~a  456 (525)
                      +.+++.  +.-.++...|  .......+.+++.|+|++  ....+++....                  +-...+++|++
T Consensus        68 ~~~~~~--~~d~v~~~~g~~~e~~~~~~~~e~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~  125 (449)
T 2w70_A           68 SAAEIT--GAVAIHPGYGFLSENANFAEQVERSGFIFI--GPKAETIRLMG------------------DKVSAIAAMKK  125 (449)
T ss_dssp             HHHHHH--TCCEEECCSSTTTTCHHHHHHHHHTTCEES--SSCHHHHHHHH------------------SHHHHHHHHHH
T ss_pred             HHHHHc--CCCEEEECCCCcccCHHHHHHHHHcCCceE--CCCHHHHHHhc------------------CHHHHHHHHHH
Confidence            555542  2223332222  122334567888999976  43333443332                  13368999999


Q ss_pred             CCCCe---E--EEcChhHH-HHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         457 SKLPL---I--FASDLDEA-ASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       457 yGIpv---~--lA~s~deA-v~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      +|||+   .  .+.+.+++ .+   .++++  |||||+|-.+..
T Consensus       126 ~gip~p~~~~~~~~~~~~~~~~---~~~~~--g~PvvvKp~~g~  164 (449)
T 2w70_A          126 AGVPCVPGSDGPLGDDMDKNRA---IAKRI--GYPVIIKASGGG  164 (449)
T ss_dssp             HTCCBCSBCSSCCCSCHHHHHH---HHHHH--CSSEEEEETTCC
T ss_pred             cCCCcCCCcccccCCHHHHHHH---HHHHh--CCcEEEEECCCC
Confidence            99998   3  67888888 66   34564  999999987654

>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*

Probab=93.86  E-value=0.073  Score=55.26  Aligned_cols=67  Identities=18%  Similarity=0.259  Sum_probs=47.4

Q ss_pred             HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785         402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK  478 (525)
Q Consensus       402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~  478 (525)
                      ..+.|++.|+|++  ....+++....                  +-...+++|+++|||+   ..+.+.+++.+   .++
T Consensus        78 ~~~~l~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~  134 (422)
T 2xcl_A           78 LVDEFEKAGLHVF--GPSKAAAIIEG------------------SKQFAKDLMKKYDIPTAEYETFTSFDEAKA---YVQ  134 (422)
T ss_dssp             HHHHHHHTTCCEE--SCCTTTTHHHH------------------CHHHHHHHHHHTTCCBCCEEEESCHHHHHH---HHH
T ss_pred             HHHHHHHCCCCEE--CcCHHHHHHhc------------------CHHHHHHHHHHcCCCCCCeEEECCHHHHHH---HHH
Confidence            3456778899987  33333332221                  2346889999999999   77889998877   345


Q ss_pred             hcCCCCcEEEEEecC
Q psy7785         479 SFKLSIPLVVRLEGT  493 (525)
Q Consensus       479 ~~~~G~PVVlKi~~~  493 (525)
                      ++  |||+|+|-.+.
T Consensus       135 ~~--~~P~vvKp~~~  147 (422)
T 2xcl_A          135 EK--GAPIVIKADGL  147 (422)
T ss_dssp             HH--CSSEEEEESSC
T ss_pred             hc--CCCEEEEeCCC
Confidence            64  99999998765

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}

Probab=93.84  E-value=0.091  Score=54.37  Aligned_cols=70  Identities=14%  Similarity=0.243  Sum_probs=42.7

Q ss_pred             HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCC-CCe---EEEcChh----HHHHHHH
Q psy7785         404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESK-LPL---IFASDLD----EAASLVN  475 (525)
Q Consensus       404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayG-Ipv---~lA~s~d----eAv~~~~  475 (525)
                      ..|+..|+|++  .+...++....                  +-...|++|+++| ||+   .++.+.+    ++.+   
T Consensus       139 ~lle~~gipy~--G~~~~a~~~~~------------------DK~~~k~~l~~~G~Ipvp~~~~~~~~~~~~~~~~~---  195 (383)
T 3k3p_A          139 GFLEVLKMPYV--GTNILSSSVAM------------------DKITTNQVLESATTIPQVAYVALIEGEPLESKLAE---  195 (383)
T ss_dssp             HHHHHTTCCBS--SCCHHHHHHHH------------------CHHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHH---
T ss_pred             HHHHHcCCCcc--CCCHHHHHHHh------------------CHHHHHHHHHhCCCcCCCCEEEEeCccchhHHHHH---
Confidence            46777899987  44333333221                  2346899999999 999   5555553    3333   


Q ss_pred             HhhhcCCCCcEEEEEecCChHHH
Q psy7785         476 ACKSFKLSIPLVVRLEGTNVQEG  498 (525)
Q Consensus       476 aa~~~~~G~PVVlKi~~~~~~~~  498 (525)
                      .++++  |||||+|-....-..|
T Consensus       196 ~~~~l--g~PvvVKP~~ggss~G  216 (383)
T 3k3p_A          196 VEEKL--IYPVFVKPANMGSSVG  216 (383)
T ss_dssp             HHHHC--CSSEEEEECC------
T ss_pred             HHHhc--CCCEEEEeCCCCCCCC
Confidence            45564  9999999876654443

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=93.52  E-value=0.052  Score=63.99  Aligned_cols=161  Identities=11%  Similarity=0.076  Sum_probs=88.1

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccC--hHHHHHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVN--CATIAKGLVNA  380 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~--~~~ia~~i~~a  380 (525)
                      +|.| .|+|..++..+-+|.+.|..+- -+|...+....      ..-    -.|-.+. +..+...  .....+.|+++
T Consensus         6 kVLI-agrGeia~riiraa~elGi~vV-av~s~~d~~s~------~~~----~ADe~~~-ig~~~~~~~syld~~~Ii~~   72 (1150)
T 3hbl_A            6 KLLV-ANRGEIAIRIFRAAAELDISTV-AIYSNEDKSSL------HRY----KADESYL-VGSDLGPAESYLNIERIIDV   72 (1150)
T ss_dssp             EEEE-CCCHHHHHHHHHHHHHTTCEEE-EEECGGGTTCG------GGG----TSSEEEE-CCTTSCTTGGGTCHHHHHHH
T ss_pred             EEEE-ECCCHHHHHHHHHHHHCCCEEE-EEEcCCcccch------hhh----hcceeee-cCCCCCccccccCHHHHHHH
Confidence            4555 7888899999999999998520 01111111100      000    1222221 2211111  11113466666


Q ss_pred             HHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCC
Q psy7785         381 CKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESK  458 (525)
Q Consensus       381 ~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayG  458 (525)
                      +++  .+.-.+....|.  ......+.+++.|+|++  ....+++..+.                  +-..++++|+++|
T Consensus        73 a~~--~~~DaI~pg~gflsE~~~~a~~le~~Gi~~i--Gp~~eai~~~~------------------DK~~~r~ll~~aG  130 (1150)
T 3hbl_A           73 AKQ--ANVDAIHPGYGFLSENEQFARRCAEEGIKFI--GPHLEHLDMFG------------------DKVKARTTAIKAD  130 (1150)
T ss_dssp             HHH--TTCSEEECTTTTSTTCHHHHHHHHHTTCEES--SSCHHHHHHHH------------------SHHHHHHHHHHTT
T ss_pred             HHH--hCCCEEEECCCcccccHHHHHHHHHCCCCee--CCCHHHHHHhC------------------CHHHHHHHHHHcC
Confidence            666  333333322231  22344667888999987  54445555442                  2346899999999


Q ss_pred             CCe---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785         459 LPL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD  503 (525)
Q Consensus       459 Ipv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~  503 (525)
                      ||+   .  .+.+.+++.+   .++++  |||||+|-....-..|-+++.
T Consensus       131 IPvpp~~~~~v~s~eea~~---~a~~i--GyPvVVKP~~GgGg~Gv~vv~  175 (1150)
T 3hbl_A          131 LPVIPGTDGPIKSYELAKE---FAEEA--GFPLMIKATSGGGGKGMRIVR  175 (1150)
T ss_dssp             CCBCCBCSSCBCSSSTTTT---TGGGT--CSSEEEECCC-------CEEC
T ss_pred             cCCCCccccCCCCHHHHHH---HHHHc--CCCEEEEeCCCCCCCCEEEEC
Confidence            999   3  6788888876   56674  999999998777666655544

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=93.41  E-value=0.075  Score=62.78  Aligned_cols=162  Identities=11%  Similarity=0.112  Sum_probs=66.6

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc------ccChHHH--H
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG------IVNCATI--A  374 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~------~~~~~~i--a  374 (525)
                      +--+|.|-|-.++-.+-+|.+.|.+.- -+|-..+...      ...-..|..   +.+  ...      .......  .
T Consensus        15 ~~~lianrGeia~riiraa~elGi~vv-av~s~~d~~a------~~~~~ADe~---~~i--~~~~~~~~~~~~~~~yld~   82 (1165)
T 2qf7_A           15 SKILVANRSEIAIRVFRAANELGIKTV-AIWAEEDKLA------LHRFKADES---YQV--GRGPHLARDLGPIESYLSI   82 (1165)
T ss_dssp             CEEEECCCHHHHHHHHHHHHHTTCEEE-EEECGGGTTC------HHHHSSSSE---EEC--SCSTTSSSCCCTTHHHHCH
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEE-EEECCCcccc------hhHHhCCEE---EEc--CCcccccccCCccccccCH
Confidence            456788999899999999999998520 0111111110      111122321   121  111      1111222  4


Q ss_pred             HHHHHHHHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHH
Q psy7785         375 KGLVNACKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR  452 (525)
Q Consensus       375 ~~i~~a~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~  452 (525)
                      +.|.+++++.  +.-.++...|.  ......+.+++.|+|++  ....+++..+.                  +-..+++
T Consensus        83 ~~I~~~a~~~--~iD~V~pg~g~lsE~~~~a~~le~~Gi~~i--Gp~~~ai~~~~------------------DK~~~k~  140 (1165)
T 2qf7_A           83 DEVIRVAKLS--GADAIHPGYGLLSESPEFVDACNKAGIIFI--GPKADTMRQLG------------------NKVAARN  140 (1165)
T ss_dssp             HHHHHHHHHH--TCSEEECCSSTTTTCHHHHHHHHHTTCEES--SCCHHHHHHHH------------------SHHHHHH
T ss_pred             HHHHHHHHHh--CCCEEEECCCchhcCHHHHHHHHHcCCceE--CCCHHHHHHHC------------------CHHHHHH
Confidence            5666766652  22233322231  12334567888999987  44444554442                  2346899


Q ss_pred             HHHHCCCCe---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785         453 ILDESKLPL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD  503 (525)
Q Consensus       453 LL~ayGIpv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~  503 (525)
                      +|+++|||+   .  .+.+.+++.+   .++++  |||||+|-.+..-.+|-+++.
T Consensus       141 ~l~~~GIPvp~~~~~~v~s~eea~~---~a~~i--gyPvVVKp~~g~GG~Gv~iv~  191 (1165)
T 2qf7_A          141 LAISVGVPVVPATEPLPDDMAEVAK---MAAAI--GYPVMLKASWGGGGRGMRVIR  191 (1165)
T ss_dssp             HHHHTTCCBC----------------------------------------------
T ss_pred             HHHHcCCCCCCeeCcCCCCHHHHHH---HHHhc--CCCEEEEeCCCCCCCCEEEEC
Confidence            999999999   3  5778888877   45564  999999998776666655554

>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*

Probab=93.36  E-value=0.18  Score=48.60  Aligned_cols=76  Identities=17%  Similarity=0.211  Sum_probs=53.8

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...++..|+|++  .+++ ++....                  +-...+++|+++|||+   ..+.+.+++.+   .+++
T Consensus        66 ~~~l~~~g~~~~--~~~~-~~~~~~------------------dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~---~~~~  121 (280)
T 1uc8_A           66 ARYLTALGIPVV--NRPE-VIEACG------------------DKWATSVALAKAGLPQPKTALATDREEALR---LMEA  121 (280)
T ss_dssp             HHHHHHTTCCEE--SCHH-HHHHHH------------------BHHHHHHHHHHTTCCCCCEEEESSHHHHHH---HHHH
T ss_pred             HHHHHHCCCcee--CCHH-HHHHhC------------------CHHHHHHHHHHcCcCCCCeEeeCCHHHHHH---HHHH
Confidence            346677899988  6643 333221                  1235789999999999   77888888776   3455


Q ss_pred             cCCCCcEEEEEecCChHHHHHhhhh
Q psy7785         480 FKLSIPLVVRLEGTNVQEGKRILDE  504 (525)
Q Consensus       480 ~~~G~PVVlKi~~~~~~~~~~~~~~  504 (525)
                      +  |||+|+|-....-..|..+++.
T Consensus       122 ~--~~p~vvKp~~g~~~~gv~~v~~  144 (280)
T 1uc8_A          122 F--GYPVVLKPVIGSWGRLLAXXXX  144 (280)
T ss_dssp             H--CSSEEEECSBCCBCSHHHHHHH
T ss_pred             h--CCCEEEEECCCCCcccceeccc
Confidence            4  9999999987776667666653

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=93.20  E-value=0.23  Score=52.11  Aligned_cols=67  Identities=25%  Similarity=0.241  Sum_probs=47.4

Q ss_pred             HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785         402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK  478 (525)
Q Consensus       402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~  478 (525)
                      ..+.+++.|+|++  ....+++....                  +-...+++|+++|||+   ..+.+.+++.+   .++
T Consensus       104 ~~~~l~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~  160 (452)
T 2qk4_A          104 IVGNLRSAGVQCF--GPTAEAAQLES------------------SKRFAKEFMDRHGIPTAQWKAFTKPEEACS---FIL  160 (452)
T ss_dssp             HHHHHHHTTCCEE--SCCTTTTHHHH------------------BHHHHHHHHHHTTCCBCCEEEESSHHHHHH---HHH
T ss_pred             HHHHHHhcCCcEe--CcCHHHHHHhc------------------CHHHHHHHHHHCCCCCCCeEEECCHHHHHH---HHH
Confidence            3567788899987  33222332221                  1236889999999999   67889998877   455


Q ss_pred             hcCCCCc-EEEEEecC
Q psy7785         479 SFKLSIP-LVVRLEGT  493 (525)
Q Consensus       479 ~~~~G~P-VVlKi~~~  493 (525)
                      ++  ||| ||+|-.+.
T Consensus       161 ~~--g~P~vvvKp~~~  174 (452)
T 2qk4_A          161 SA--DFPALVVKASGL  174 (452)
T ss_dssp             HC--SSCEEEEEESBC
T ss_pred             hC--CCCeEEEEeCCC
Confidence            64  999 99999765

>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A

Probab=93.20  E-value=0.16  Score=52.70  Aligned_cols=66  Identities=20%  Similarity=0.307  Sum_probs=46.6

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      .+.+++.|+|++  ....+++....                  +-...+++|+++|||+   ..+.+.+++.+   .+++
T Consensus        79 ~~~l~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~~  135 (424)
T 2yw2_A           79 VDEFEKRGLKIF--GPNKEAAKLEG------------------SKAFAKTFMKKYGIPTARYEVFTDFEKAKE---YVEK  135 (424)
T ss_dssp             HHHHHHTTCCEE--SCCTTTTHHHH------------------CHHHHHHHHHHTTCCBCCEEEESCHHHHHH---HHHH
T ss_pred             HHHHHHCCCcEE--CcCHHHHHHHh------------------CHHHHHHHHHHcCCCCCCeEEECCHHHHHH---HHHH
Confidence            456778899987  32222332221                  2336889999999999   67889998877   3556


Q ss_pred             cCCCCcEEEEEecC
Q psy7785         480 FKLSIPLVVRLEGT  493 (525)
Q Consensus       480 ~~~G~PVVlKi~~~  493 (525)
                      +  |||||+|-.+.
T Consensus       136 ~--~~PvvvKp~~g  147 (424)
T 2yw2_A          136 V--GAPIVVKADGL  147 (424)
T ss_dssp             H--CSSEEEEESSC
T ss_pred             c--CCcEEEEeCCC
Confidence            4  99999998765

>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}

Probab=93.06  E-value=0.1  Score=52.13  Aligned_cols=59  Identities=12%  Similarity=0.271  Sum_probs=41.5

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      + |||+|++.+           .+++| |+|+|+..-.+|  +         ||.+..+               .     
T Consensus       120 ~-Gip~p~~~~-----------~~~~~-P~vvKP~~g~gs--~---------Gv~~v~~---------------~-----  155 (305)
T 3df7_A          120 G-EVQVPQTSL-----------RPLDC-KFIIKPRTACAG--E---------GIGFSDE---------------V-----  155 (305)
T ss_dssp             T-TSCCCCEES-----------SCCSS-SEEEEESSCC---------------CBCCSS---------------C-----
T ss_pred             h-CCCCCCEec-----------ccCCC-CEEEEeCCCCCC--C---------CEEEEec---------------C-----
Confidence            7 999999875           25786 999999643332  2         4544444               1     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                            ...++||+|++ +.|+.+.+..+.
T Consensus       156 ------~~~~lvEe~I~-G~e~sv~v~~g~  178 (305)
T 3df7_A          156 ------PDGHIAQEFIE-GINLSVSLAVGE  178 (305)
T ss_dssp             ------CTTEEEEECCC-SEEEEEEEEESS
T ss_pred             ------CCCEEEEeccC-CcEEEEEEEeCC
Confidence                  13589999999 799999998754

>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*

Probab=92.40  E-value=0.2  Score=51.30  Aligned_cols=118  Identities=13%  Similarity=0.056  Sum_probs=73.8

Q ss_pred             cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785         303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK  382 (525)
Q Consensus       303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~  382 (525)
                      +|+|+. ||=+|-|.+-++...|.++   +|...++...    .+.  +   ++|+|.                      
T Consensus         3 ~igilG-gGqlg~m~~~aa~~lG~~v---~~~~~~a~~~----~~~--l---~~d~it----------------------   47 (355)
T 3eth_A            3 QVCVLG-NGQLGRMLRQAGEPLGIAV---WPVGLDAEPA----AVP--F---QQSVIT----------------------   47 (355)
T ss_dssp             EEEEES-CSHHHHHHHHHHGGGTCEE---EEECTTCCGG----GCC--C---TTSEEE----------------------
T ss_pred             EEEEEC-CCHHHHHHHHHHHHCCCEE---ECCCCCCCce----EEc--c---cCCEEE----------------------
Confidence            477764 5568999999999999987   6665543320    000  0   233222                      


Q ss_pred             hcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785         383 SFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-  461 (525)
Q Consensus       383 ~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-  461 (525)
                                .-.+.-..+..+.+.+.| +++  ++++. +....                  +-...|++|+++|||+ 
T Consensus        48 ----------~e~e~v~~~~l~~l~~~~-~v~--p~~~a-~~~~~------------------DK~~~k~~l~~~GIptp   95 (355)
T 3eth_A           48 ----------AEIERWPETALTRQLARH-PAF--VNRDV-FPIIA------------------DRLTQKQLFDKLHLPTA   95 (355)
T ss_dssp             ----------ESCSCCCCCHHHHHHHTC-TTB--TTTTH-HHHHH------------------SHHHHHHHHHHTTCCBC
T ss_pred             ----------ECcCCcCHHHHHHHHhcC-CcC--CCHHH-HHHhc------------------CHHHHHHHHHHCccCCC
Confidence                      111111123455666666 666  55432 22221                  1235799999999999 


Q ss_pred             --EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785         462 --IFASDLDEAASLVNACKSFKLSIPLVVRLEG  492 (525)
Q Consensus       462 --~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~  492 (525)
                        ..+.+.+++.+   +++++  |||+|+|-..
T Consensus        96 ~~~~v~~~~e~~~---~~~~~--G~P~VvKp~~  123 (355)
T 3eth_A           96 PWQLLAERSEWPA---VFDRL--GELAIVKRRT  123 (355)
T ss_dssp             CEEEECCGGGHHH---HHHHH--CSEEEEEESS
T ss_pred             CEEEECCHHHHHH---HHHHc--CCCEEEEecC
Confidence              78899999887   45564  9999999974

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}

Probab=92.20  E-value=0.23  Score=50.97  Aligned_cols=145  Identities=14%  Similarity=0.118  Sum_probs=78.4

Q ss_pred             CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785         302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC  381 (525)
Q Consensus       302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~  381 (525)
                      .+|.|+ ++|+.+...+-++.+.|..+-= +|..+ .....+    +  ..|    -.+. .  ...+.    +.+.+++
T Consensus         8 ~~ilI~-g~g~~~~~~~~a~~~~G~~~v~-v~~~~-~~~~~~----~--~ad----~~~~-~--~~~d~----~~l~~~~   67 (403)
T 4dim_A            8 KRLLIL-GAGRGQLGLYKAAKELGIHTIA-GTMPN-AHKPCL----N--LAD----EISY-M--DISNP----DEVEQKV   67 (403)
T ss_dssp             CEEEEE-CCCGGGHHHHHHHHHHTCEEEE-EECSS-CCHHHH----H--HCS----EEEE-C--CTTCH----HHHHHHT
T ss_pred             CEEEEE-CCcHhHHHHHHHHHHCCCEEEE-EcCCC-CCCcch----h--hCC----eEEE-e--cCCCH----HHHHHHH
Confidence            466555 5555677888999999985311 12211 111111    1  122    2221 1  11222    4566666


Q ss_pred             HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785         382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL  459 (525)
Q Consensus       382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI  459 (525)
                      ++  .+.-.++.. |.  ......+..++.|+| .  .+++ ++..+.                  +-...+++|+++||
T Consensus        68 ~~--~~~d~v~~~-~~~~~~~~~a~~~~~~gl~-g--~~~~-~~~~~~------------------dK~~~~~~l~~~gi  122 (403)
T 4dim_A           68 KD--LNLDGAATC-CLDTGIVSLARICDKENLV-G--LNEE-AAIMCG------------------DKYKMKEAFKKYNV  122 (403)
T ss_dssp             TT--SCCSEEECC-SCSTTHHHHHHHHHHHTCS-S--CCHH-HHHHHH------------------CHHHHHHHHHHHTC
T ss_pred             HH--cCCCEEEeC-CcchhHHHHHHHHHHcCcC-C--CCHH-HHHHHh------------------CHHHHHHHHHHcCC
Confidence            55  222233322 32  222334455677885 3  4543 333221                  23368899999999


Q ss_pred             Ce---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChH
Q psy7785         460 PL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQ  496 (525)
Q Consensus       460 pv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~  496 (525)
                      |+   ..+.+.+++.+   .++++  |||+|+|-....-.
T Consensus       123 p~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~g~gg  157 (403)
T 4dim_A          123 NTARHFVVRNENELKN---ALENL--KLPVIVKATDLQGS  157 (403)
T ss_dssp             CCCCEECCCSHHHHHH---HHHTS--CSSEEEECSCC---
T ss_pred             CCCCEEEeCCHHHHHH---HHhcC--CCCEEEEECCCCCC
Confidence            99   67788888887   45664  99999998765433

>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1

Probab=92.07  E-value=0.19  Score=51.66  Aligned_cols=67  Identities=7%  Similarity=0.041  Sum_probs=45.0

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhH----HHHHHH
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDE----AASLVN  475 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~de----Av~~~~  475 (525)
                      ...|+..|+|++  .+...++....                  +-...+++|+++|||+   .++.+.++    +.+   
T Consensus       112 ~~lle~~gip~~--G~~~~a~~~~~------------------DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~---  168 (377)
T 1ehi_A          112 QGLFKLLDKPYV--GAPLRGHAVSF------------------DKALTKELLTVNGIRNTKYIVVDPESANNWSWDK---  168 (377)
T ss_dssp             HHHHHHTTCCBS--SCCHHHHHHHH------------------SHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHH---
T ss_pred             HHHHHHcCCCEe--CcCHHHHHHHc------------------CHHHHHHHHHHcCCCCCCEEEEeccccchHHHHH---
Confidence            456788999987  44444443322                  2346899999999999   56666554    433   


Q ss_pred             HhhhcCCCCcEEEEEecCC
Q psy7785         476 ACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       476 aa~~~~~G~PVVlKi~~~~  494 (525)
                      .++++  |||||+|-....
T Consensus       169 ~~~~~--g~PvvVKP~~~~  185 (377)
T 1ehi_A          169 IVAEL--GNIVFVKAANQG  185 (377)
T ss_dssp             HHHHH--CSCEEEEESSCC
T ss_pred             HHHhc--CCCEEEEeCCCC
Confidence            34454  999999987654

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}

Probab=91.75  E-value=0.23  Score=50.98  Aligned_cols=70  Identities=16%  Similarity=0.221  Sum_probs=47.0

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChh--HHHHHHHHh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLD--EAASLVNAC  477 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~d--eAv~~~~aa  477 (525)
                      ...|+..|+|++  .+...++....                  +-...+++|+++|||+   ..+.+.+  ++.+    +
T Consensus       126 ~~~le~~gip~~--G~~~~a~~~~~------------------DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~----~  181 (367)
T 2pvp_A          126 ASLLEFYRIAFI--GPRIEASVLSY------------------NKYLTKLYAKDLGIKTLDYVLLNEKNRANALD----L  181 (367)
T ss_dssp             HHHHHHTTCCEE--SCCHHHHHHHH------------------SHHHHHHHHHHHTCBCCCCEEECTTTGGGHHH----H
T ss_pred             HHHHHHcCCCcc--CCCHHHHHHHc------------------CHHHHHHHHHHCCcCCCCEEEEeCCchHHHHH----H
Confidence            456788899987  44333333322                  1236899999999999   6666666  5543    3


Q ss_pred             hhcCCCCcEEEEEecCChHHH
Q psy7785         478 KSFKLSIPLVVRLEGTNVQEG  498 (525)
Q Consensus       478 ~~~~~G~PVVlKi~~~~~~~~  498 (525)
                      ++  .|||||+|-....-..|
T Consensus       182 ~~--lg~PvvVKP~~g~ss~G  200 (367)
T 2pvp_A          182 MN--FNFPFIVKPSNAGSSLG  200 (367)
T ss_dssp             CC--SCSCEEEEESSCCTTTT
T ss_pred             hc--cCCCEEEEECCCCCCCC
Confidence            45  39999999877654444

>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A

Probab=91.70  E-value=0.51  Score=51.02  Aligned_cols=152  Identities=15%  Similarity=0.130  Sum_probs=82.7

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCC------------CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccccc
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEP------------ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIV  368 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~------------aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~  368 (525)
                      -.+|.|+ ++|..++..+.++.+.|..+            ..+.|....+      ...+  ..    |-.+. ++.+. 
T Consensus        47 ~kkILI~-g~g~~a~~iira~~~~G~~vi~~d~gi~~v~v~s~~D~~~~~------~~~~--~a----D~~~~-ip~~~-  111 (554)
T 1w96_A           47 ISKILIA-NNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANA------EYIR--MA----DQYIE-VPGGT-  111 (554)
T ss_dssp             CCEEEEC-CCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTC------HHHH--HS----SEEEE-CCCSS-
T ss_pred             ccEEEEE-CCCHHHHHHHHHHHHcCCcceecccCceEEEEecccccccCC------hhhh--hC----CEEEE-cCCCC-
Confidence            3466665 77888888999999887542            1111211111      1111  12    22222 22211 


Q ss_pred             ChHHH--HHHHHHHHHhcCCCCcEEEEeCCc--chHHHHHHHhhCC--CCccccCCHHHHHHHHHHhhcccCCCCeEEEe
Q psy7785         369 NCATI--AKGLVNACKSFKLSIPLVVRLEGT--NVQEGKRILDESK--LPLIFASDLDEAASLVNACKSFKLSIPLVVRL  442 (525)
Q Consensus       369 ~~~~i--a~~i~~a~~~~~~~kPivv~~~g~--~~~~~~~~L~~~G--vpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l  442 (525)
                      +....  .+.|.+++++  .+.-.++...|.  ........+++.|  ++++  ....+++..+                
T Consensus       112 ~~~~y~d~~~l~~~a~~--~~id~Vi~g~G~~sE~~~~~~~l~~~g~~i~~~--gp~~~a~~~~----------------  171 (554)
T 1w96_A          112 NNNNYANVDLIVDIAER--ADVDAVWAGWGHASENPLLPEKLSQSKRKVIFI--GPPGNAMRSL----------------  171 (554)
T ss_dssp             GGGTTTCHHHHHHHHHH--TTCSEEECCSSTTTTCTHHHHHHHHSTTCCEES--SCCHHHHHHS----------------
T ss_pred             ccccccCHHHHHHHHHH--hCCCEEEECCCccccCHHHHHHHHHcCCeEEEe--CCCHHHHHHH----------------
Confidence            11111  3566777766  333344332232  1122334678888  8877  4333333322                


Q ss_pred             CCCCHHHHHHHHHHCCCCe---EE--------------------------EcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785         443 EGTNVQEGKRILDESKLPL---IF--------------------------ASDLDEAASLVNACKSFKLSIPLVVRLEGT  493 (525)
Q Consensus       443 ~g~~e~eak~LL~ayGIpv---~l--------------------------A~s~deAv~~~~aa~~~~~G~PVVlKi~~~  493 (525)
                        .+-..++++|+++|||+   ..                          +.+.+++.+   .++++  |||||+|-.+.
T Consensus       172 --~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~---~~~~~--g~PvVvKp~~g  244 (554)
T 1w96_A          172 --GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQ---KAKRI--GFPVMIKASEG  244 (554)
T ss_dssp             --CSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHH---HHHHH--CSSEEEEETTC
T ss_pred             --hCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHH---HHHHc--CCCEEEEECCC
Confidence              23456899999999998   21                          367788876   45564  99999998765


Q ss_pred             C
Q psy7785         494 N  494 (525)
Q Consensus       494 ~  494 (525)
                      .
T Consensus       245 ~  245 (554)
T 1w96_A          245 G  245 (554)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}

Probab=90.91  E-value=0.15  Score=52.46  Aligned_cols=70  Identities=16%  Similarity=0.282  Sum_probs=44.7

Q ss_pred             HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHH--HHHHHHhh
Q psy7785         404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEA--ASLVNACK  478 (525)
Q Consensus       404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deA--v~~~~aa~  478 (525)
                      ..|+..|+|++  .+...++....                  +-...|++|+++|||+   ..+.+.+++  ..   .++
T Consensus       129 ~lle~~gip~v--G~~~~a~~~~~------------------DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~---~~~  185 (373)
T 3lwb_A          129 GLLELAGVPYV--GAGVLASAVGM------------------DKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQ---ECE  185 (373)
T ss_dssp             HHHHHHTCCBS--SSCHHHHHHHH------------------BHHHHHHHHHHTTCCBCCEEEECTTCCCCCHH---HHH
T ss_pred             HHHHHcCCCcc--CCcHHHHHHHc------------------CHHHHHHHHHHcCcCCCCEEEEECcccchhHH---HHH
Confidence            45677899988  54333333221                  1236899999999999   566665541  22   244


Q ss_pred             hcCCCCcEEEEEecCChHHH
Q psy7785         479 SFKLSIPLVVRLEGTNVQEG  498 (525)
Q Consensus       479 ~~~~G~PVVlKi~~~~~~~~  498 (525)
                      ++  |||||+|-....-..|
T Consensus       186 ~l--g~PvvVKP~~ggss~G  203 (373)
T 3lwb_A          186 RL--GLPVFVKPARGGSSIG  203 (373)
T ss_dssp             HH--CSCEEEEESBCSTTTT
T ss_pred             hc--CCCEEEEeCCCCCCCC
Confidence            54  9999999876554444

>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}

Probab=90.84  E-value=0.63  Score=48.19  Aligned_cols=44  Identities=25%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             HHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHH
Q psy7785         448 QEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEG  498 (525)
Q Consensus       448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~  498 (525)
                      ...+++|+++|||+   ..+.+.+++.+     .+  .|||+|+|-....-.+|
T Consensus       114 ~~~k~~l~~~gip~p~~~~~~~~~~~~~-----~~--~g~P~vvKp~~g~gs~G  160 (425)
T 3vot_A          114 NKTRSILQQNGLNTPVFHEFHTLADLEN-----RK--LSYPLVVKPVNGFSSQG  160 (425)
T ss_dssp             HHHHHHHHHTTCCCCCEEEESSGGGGTT-----CC--CCSSEEEEESCC-----
T ss_pred             HHHHHHHHHCCCCCCceeccCcHHHHHH-----hh--cCCcEEEEECCCCCCCC
Confidence            36899999999999   77888887642     34  49999999765443333

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=90.76  E-value=0.12  Score=53.75  Aligned_cols=43  Identities=23%  Similarity=0.309  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         447 VQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       447 e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      -...+++|+++|||+   ..+.+.+++.+   .++++  |||||+|-.+..
T Consensus       107 K~~~k~~l~~~gip~p~~~~~~~~~e~~~---~~~~~--g~PvvvKp~~~~  152 (412)
T 1vkz_A          107 KVYAKRFMKKYGIRTARFEVAETPEELRE---KIKKF--SPPYVIKADGLA  152 (412)
T ss_dssp             HHHHHHHHHHTTCCCCCEEEESSHHHHHH---HHTTS--CSSEEEEESSCC
T ss_pred             HHHHHHHHHHcCCCCCCEEEECCHHHHHH---HHHhc--CCCEEEEeCCCC
Confidence            346899999999999   67899999887   45564  999999987653

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}

Probab=90.68  E-value=0.12  Score=58.36  Aligned_cols=49  Identities=18%  Similarity=0.268  Sum_probs=38.4

Q ss_pred             HHHHHHHHCCCCe---EEEcChhHHHHHHHHh-hhcCCCCcEEEEEecCChHHHHHhh
Q psy7785         449 EGKRILDESKLPL---IFASDLDEAASLVNAC-KSFKLSIPLVVRLEGTNVQEGKRIL  502 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa-~~~~~G~PVVlKi~~~~~~~~~~~~  502 (525)
                      .+|++|+++|||+   ..+.+.+++.+   .+ +.  .|||||+|-.+.+-.+|-.+.
T Consensus       492 ~tk~lL~~~GIPvP~~~~~~~~~ea~~---~~~~~--~g~PvVVKP~~g~~G~GV~iv  544 (757)
T 3ln7_A          492 VTKKVLQKAGFNVPQSVEFTSLEKAVA---SYALF--ENRAVVIKPKSTNYGLGITIF  544 (757)
T ss_dssp             HHHHHHHHHTCCCCCEEEESCHHHHHH---GGGGS--SSSCEEEEESSCSTTTTCEEC
T ss_pred             HHHHHHHHCCcCCCCEEEECCHHHHHH---HHHHh--cCCCEEEEeCCCCCCCCeEEe
Confidence            4899999999999   77889998876   34 55  499999999887665554443

>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}

Probab=90.55  E-value=0.11  Score=52.53  Aligned_cols=66  Identities=11%  Similarity=0.144  Sum_probs=43.9

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...|+..|+|++  .+...++....                  +-...+++|+++|||+   .++.+.++  .   .+.+
T Consensus       109 q~~le~~gip~~--g~~~~a~~~~~------------------dK~~~k~~l~~~Gip~p~~~~~~~~~~--~---~~~~  163 (346)
T 3se7_A          109 QGLLELSGIPYV--GCDIQSSALCM------------------DKSLTYLVARSAGIATPNFWTVTADEK--I---PTDQ  163 (346)
T ss_dssp             HHHHHHHCCCBS--SCCHHHHHHHH------------------SHHHHHHHHHHTTCBCCCEEEEETTSC--C---CTTT
T ss_pred             HHHHHHcCCCee--CcCHHHHHHHh------------------CHHHHHHHHHHcCcCcCCEEEEcCcHH--H---HHHh
Confidence            357778899988  54334333321                  2346899999999999   55666551  1   2445


Q ss_pred             cCCCCcEEEEEecCCh
Q psy7785         480 FKLSIPLVVRLEGTNV  495 (525)
Q Consensus       480 ~~~G~PVVlKi~~~~~  495 (525)
                        .|||||+|-....-
T Consensus       164 --lg~PvvvKP~~~~~  177 (346)
T 3se7_A          164 --LTYPVFVKPARSGS  177 (346)
T ss_dssp             --CCSSEEEEESSCCT
T ss_pred             --cCCCEEEEeCCCCC
Confidence              49999999876653

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=90.30  E-value=0.22  Score=51.02  Aligned_cols=42  Identities=14%  Similarity=0.212  Sum_probs=34.4

Q ss_pred             HHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         448 QEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      ...+++|+++|||+   ..+.+.+++.+   +++++  |||+|+|-....
T Consensus       112 ~~~k~~l~~~Gip~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~gg  156 (377)
T 3orq_A          112 LTEKETLKSAGTKVVPFISVKESTDIDK---AIETL--GYPFIVKTRFGG  156 (377)
T ss_dssp             HHHHHHHHHTTCCBCCEEEECSSTHHHH---HHHHT--CSSEEEEESSSC
T ss_pred             HHHHHHHHHCCCCCCCeEEECCHHHHHH---HHHHc--CCCEEEEeCCCC
Confidence            36789999999999   77888888877   45564  999999997543

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}

Probab=90.22  E-value=0.32  Score=49.37  Aligned_cols=43  Identities=9%  Similarity=0.151  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         447 VQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       447 e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      -...+++|+++|||+   ..+.+.+++.+   .++++  |||+|+|-.+..
T Consensus        97 K~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~~~  142 (369)
T 3aw8_A           97 RLREKTFFQGLGVPTPPFHPVDGPEDLEE---GLKRV--GLPALLKTRRGG  142 (369)
T ss_dssp             HHHHHHHHHHHTCCCCCEEEESSHHHHHH---HHTTT--CSSEEEEECCC-
T ss_pred             HHHHHHHHHHCCCCCCCceeeCCHHHHHH---HHHHc--CCCEEEEEcCCC
Confidence            457899999999999   77889998877   45564  999999998765

>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}

Probab=90.06  E-value=0.32  Score=50.04  Aligned_cols=72  Identities=14%  Similarity=0.187  Sum_probs=43.5

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHH---HHHHHH
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEA---ASLVNA  476 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deA---v~~~~a  476 (525)
                      ...|+..|+|+.  .+...++....                  +-...|++|+++|||+   ..+.+.+++   ..  +.
T Consensus       117 q~lle~~gipy~--G~~~~a~~~~~------------------DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~--~~  174 (372)
T 3tqt_A          117 QGLLELLNLPYV--GANVQSSAVCM------------------EKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQ--RL  174 (372)
T ss_dssp             HHHHHHTTCCBS--SCCHHHHHHHH------------------SHHHHHHHHHHTTCCBCCCEEECTTSCCTTHHH--HH
T ss_pred             HHHHHHcCCCee--CcCHHHHHHHh------------------CHHHHHHHHHHCCcCCCCEEEEechhhhhhHHH--HH
Confidence            357788999987  54433333321                  1236899999999999   666666541   21  13


Q ss_pred             hhhcCCCCc-EEEEEecCChHHH
Q psy7785         477 CKSFKLSIP-LVVRLEGTNVQEG  498 (525)
Q Consensus       477 a~~~~~G~P-VVlKi~~~~~~~~  498 (525)
                      ++++  ||| ||+|-....-..|
T Consensus       175 ~~~l--g~P~vvVKP~~ggss~G  195 (372)
T 3tqt_A          175 LDRW--GTSELFVKAVSLGSSVA  195 (372)
T ss_dssp             HHHC-----CEEEEESSCCSGGG
T ss_pred             HHhc--CCCeEEEEECCCCCCCC
Confidence            4564  999 9999876554433

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}

Probab=89.92  E-value=0.095  Score=59.02  Aligned_cols=46  Identities=33%  Similarity=0.371  Sum_probs=36.2

Q ss_pred             HHHHHHHHHCCCCe---EEEcChhHHHHHHHHh-hhcCCCCcEEEEEecCChHHH
Q psy7785         448 QEGKRILDESKLPL---IFASDLDEAASLVNAC-KSFKLSIPLVVRLEGTNVQEG  498 (525)
Q Consensus       448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa-~~~~~G~PVVlKi~~~~~~~~  498 (525)
                      ..+|++|+++|||+   .++.+.+++.+.   + +.  .|||||+|-.+.+-.+|
T Consensus       486 ~~tk~lL~~~GIPvP~~~~~~~~~ea~~~---~~~~--~g~PvVVKP~~G~~G~G  535 (750)
T 3ln6_A          486 VVTKKILDEKHFPTPFGDEFTDRKEALNY---FSQI--QDKPIVVKPKSTNFGLG  535 (750)
T ss_dssp             HHHHHHHHHTTCCCCCCCCEETTTTHHHH---HHHS--SSSCEEEEETTCCSSSS
T ss_pred             HHHHHHHHHCCcCCCCEEEECCHHHHHHH---HHHh--cCCcEEEEeCCCCCCCC
Confidence            46899999999999   778888888763   3 45  49999999977664443

>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}

Probab=89.86  E-value=0.72  Score=45.74  Aligned_cols=78  Identities=8%  Similarity=0.035  Sum_probs=44.2

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-EEEcChhHHHHHHHHhhhcC
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-IFASDLDEAASLVNACKSFK  481 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-~lA~s~deAv~~~~aa~~~~  481 (525)
                      .+.|...|+|++  ....+++....                  +-...+++|+++|||+ ....+.+++.+... +++  
T Consensus        91 ~~~l~~~g~~~~--~~~~~~~~~~~------------------dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~-~~~--  147 (331)
T 2pn1_A           91 TERFQAIGVTVI--VSPYAACELCF------------------DKYTMYEYCLRQGIAHARTYATMASFEEALA-AGE--  147 (331)
T ss_dssp             HHHHHTTTCEEC--CCCHHHHHHHH------------------BHHHHHHHHHHHTCCCCCEESSHHHHHHHHH-TTS--
T ss_pred             HHHHHhCCcEEe--cCCHHHHHHhh------------------CHHHHHHHHHHcCCCCCcEEecHHHhhhhhh-ccc--
Confidence            456777899876  43333343332                  1346889999999999 44446676655221 135  


Q ss_pred             CCCcEEEEEecCChHHHHHhhh
Q psy7785         482 LSIPLVVRLEGTNVQEGKRILD  503 (525)
Q Consensus       482 ~G~PVVlKi~~~~~~~~~~~~~  503 (525)
                      .|||+|+|-....-..|-.++.
T Consensus       148 ~~~P~vvKp~~g~g~~gv~~v~  169 (331)
T 2pn1_A          148 VQLPVFVKPRNGSASIEVRRVE  169 (331)
T ss_dssp             SCSCEEEEESBC----------
T ss_pred             CCCCEEEEeCCCCCCCCeEEeC
Confidence            3999999997766555554443

>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*

Probab=89.66  E-value=0.23  Score=48.89  Aligned_cols=67  Identities=15%  Similarity=0.194  Sum_probs=43.8

Q ss_pred             HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhc
Q psy7785         404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSF  480 (525)
Q Consensus       404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~  480 (525)
                      ..|+..|+|++  .....++....                  +-...+++|+++|||+   .++.+.+++...  .++++
T Consensus        75 ~~le~~gi~~~--g~~~~~~~~~~------------------dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~--~~~~~  132 (307)
T 3r5x_A           75 GTLESLGIPYS--GSNMLSSGICM------------------DKNISKKILRYEGIETPDWIELTKMEDLNFD--ELDKL  132 (307)
T ss_dssp             HHHHHHTCCBS--SSCHHHHHHHH------------------CHHHHHHHHHHTTCCCCCEEEEESSSCCCHH--HHHHH
T ss_pred             HHHHHcCCCee--CcCHHHHHHHc------------------CHHHHHHHHHHCCCCCCCEEEEeChhhhhHH--HHHhc
Confidence            46778899988  55344443332                  2346899999999999   666676655431  23453


Q ss_pred             CCCCcEEEEEecCC
Q psy7785         481 KLSIPLVVRLEGTN  494 (525)
Q Consensus       481 ~~G~PVVlKi~~~~  494 (525)
                        |||||+|-....
T Consensus       133 --~~P~vvKP~~~~  144 (307)
T 3r5x_A          133 --GFPLVVKPNSGG  144 (307)
T ss_dssp             --CSSEEEEECC--
T ss_pred             --CCCEEEEeCCCC
Confidence              999999986543

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=89.65  E-value=1.5  Score=44.55  Aligned_cols=71  Identities=13%  Similarity=0.226  Sum_probs=46.5

Q ss_pred             HHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHH
Q psy7785         400 QEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNA  476 (525)
Q Consensus       400 ~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~a  476 (525)
                      ....+.|++.|+|++  .+++.+. ...                  +-...+++|+++|||+   ..+.+.+++      
T Consensus        75 ~~~~~~l~~~gi~~~--~~~~~~~-~~~------------------dK~~~~~~l~~~gip~p~~~~~~~~~~~------  127 (380)
T 3ax6_A           75 VQTLKKLYNEGYKIH--PSPYTLE-IIQ------------------DKFVQKEFLKKNGIPVPEYKLVKDLESD------  127 (380)
T ss_dssp             HHHHHHHHHTTCEES--SCHHHHH-HHH------------------SHHHHHHHHHHTTCCCCCEEECSSHHHH------
T ss_pred             HHHHHHHHHCCCeEC--CCHHHHH-Hhc------------------CHHHHHHHHHHcCCCCCCeEEeCCHHHH------
Confidence            344567888999987  6765322 211                  1235789999999999   667787761      


Q ss_pred             hhhcCCCCcEEEEEecCC-hHHHH
Q psy7785         477 CKSFKLSIPLVVRLEGTN-VQEGK  499 (525)
Q Consensus       477 a~~~~~G~PVVlKi~~~~-~~~~~  499 (525)
                      +++  .|||+|+|-.... -.+|-
T Consensus       128 ~~~--~~~P~vvKp~~~~y~g~Gv  149 (380)
T 3ax6_A          128 VRE--FGFPVVQKARKGGYDGRGV  149 (380)
T ss_dssp             HHT--TCSSEEEEESCCC-----E
T ss_pred             HHh--cCCCEEEEecCCCCCCCCe
Confidence            335  3999999998765 44443

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=88.34  E-value=4.4  Score=42.03  Aligned_cols=143  Identities=14%  Similarity=0.079  Sum_probs=78.7

Q ss_pred             eccCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHH
Q psy7785         298 VGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGL  377 (525)
Q Consensus       298 ~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i  377 (525)
                      ..++.+|+|+ +||-.|.+.+-++.+.|.++. -+|-..+..      +.+  ..|    -.++   ....+.+    .+
T Consensus        32 ~~~~~~IlIl-G~G~lg~~~~~aa~~lG~~v~-v~d~~~~~p------~~~--~ad----~~~~---~~~~d~~----~l   90 (419)
T 4e4t_A           32 ILPGAWLGMV-GGGQLGRMFCFAAQSMGYRVA-VLDPDPASP------AGA--VAD----RHLR---AAYDDEA----AL   90 (419)
T ss_dssp             CCTTCEEEEE-CCSHHHHHHHHHHHHTTCEEE-EECSCTTCH------HHH--HSS----EEEC---CCTTCHH----HH
T ss_pred             CCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEE-EECCCCcCc------hhh--hCC----EEEE---CCcCCHH----HH
Confidence            4456789887 567789999999999998631 122211111      111  122    1221   2223333    33


Q ss_pred             HHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHC
Q psy7785         378 VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDES  457 (525)
Q Consensus       378 ~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ay  457 (525)
                      .+.++.  .+  +++.-......+..+.+.+. .+++  ++++ ++...                  .+-...|++|+++
T Consensus        91 ~~~a~~--~D--~V~~~~e~~~~~~~~~l~~~-~~vg--p~~~-a~~~~------------------~dK~~~k~~l~~~  144 (419)
T 4e4t_A           91 AELAGL--CE--AVSTEFENVPAASLDFLART-TFVA--PAGR-CVAVA------------------QDRIAEKRFIEAS  144 (419)
T ss_dssp             HHHHHH--CS--EEEECCTTCCHHHHHHHHTT-SEES--SCHH-HHHHH------------------TCHHHHHHHHHHT
T ss_pred             HHHHhc--CC--EEEEccCcCCHHHHHHHHcc-CCcC--CCHH-HHHHh------------------cCHHHHHHHHHHc
Confidence            444433  22  23321111223445666666 3444  5543 23222                  1234689999999


Q ss_pred             CCCe---EEEcChhHHHHHHHHhhhc--CCCCcEEEEEe
Q psy7785         458 KLPL---IFASDLDEAASLVNACKSF--KLSIPLVVRLE  491 (525)
Q Consensus       458 GIpv---~lA~s~deAv~~~~aa~~~--~~G~PVVlKi~  491 (525)
                      |||+   ..+.+.+++.+   ++++.  .. ||+|+|-.
T Consensus       145 Gip~p~~~~v~~~~e~~~---~~~~~~~~~-~P~VvKp~  179 (419)
T 4e4t_A          145 GVPVAPHVVIESAAALAA---LDDAALDAV-LPGILKTA  179 (419)
T ss_dssp             TCCBCCEEEECSHHHHHT---SCHHHHHTT-CSEEEEES
T ss_pred             CcCCCCeEEECCHHHHHH---HHHhhcccc-CCEEEEec
Confidence            9999   77889888776   33330  02 99999997

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*

Probab=88.14  E-value=0.84  Score=46.29  Aligned_cols=67  Identities=12%  Similarity=0.142  Sum_probs=42.9

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChh-------HHHH
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLD-------EAAS  472 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~d-------eAv~  472 (525)
                      ...++..|+|++  .+...++....                  +-...+++|+++|||+   ..+.+.+       ++.+
T Consensus       106 ~~~le~~gip~~--g~~~~~~~~~~------------------dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~  165 (364)
T 2i87_A          106 QGLFEVLDVPYV--GNGVLSAASSM------------------DKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKL  165 (364)
T ss_dssp             HHHHHHHTCCBS--SCCHHHHHHHH------------------SHHHHHHHHHHHTCCCCCEEEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcc--CCCHHHHHHHc------------------CHHHHHHHHHHCCCCCCCEEEEechhhcccchhHHHH
Confidence            356777899987  54333333322                  1236789999999998   5555554       2332


Q ss_pred             HHHHhhhcCCCCcEEEEEecCC
Q psy7785         473 LVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       473 ~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                         .++++  |||||+|-....
T Consensus       166 ---~~~~~--g~PvvvKP~~g~  182 (364)
T 2i87_A          166 ---VNDKL--NYPVFVKPANLG  182 (364)
T ss_dssp             ---HHHHC--CSSEEEEESSCS
T ss_pred             ---HHHhc--CCCEEEEeCCCC
Confidence               34564  999999986554

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=87.98  E-value=0.46  Score=48.70  Aligned_cols=141  Identities=16%  Similarity=0.110  Sum_probs=79.0

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNA  380 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a  380 (525)
                      +.+|+|+ .+|..|.+.+.++.+.|.++- -+|...+....            .-.|..++   ....+.+    .+.+.
T Consensus        14 ~k~IlIl-G~G~~g~~la~aa~~~G~~vi-~~d~~~~~~~~------------~~ad~~~~---~~~~d~~----~l~~~   72 (389)
T 3q2o_A           14 GKTIGII-GGGQLGRMMALAAKEMGYKIA-VLDPTKNSPCA------------QVADIEIV---ASYDDLK----AIQHL   72 (389)
T ss_dssp             TSEEEEE-CCSHHHHHHHHHHHHTTCEEE-EEESSTTCTTT------------TTCSEEEE---CCTTCHH----HHHHH
T ss_pred             CCEEEEE-CCCHHHHHHHHHHHHcCCEEE-EEeCCCCCchH------------HhCCceEe---cCcCCHH----HHHHH
Confidence            5578876 466699999999999998531 11221111110            01122222   1122222    34444


Q ss_pred             HHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCC
Q psy7785         381 CKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLP  460 (525)
Q Consensus       381 ~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIp  460 (525)
                      .+.  .+  +++.-.........+.|.+.|+ +.  .+++ ++...                  .+-...+++|+++|||
T Consensus        73 ~~~--~d--vI~~~~e~~~~~~~~~l~~~g~-~~--~~~~-~~~~~------------------~dK~~~k~~l~~~Gip  126 (389)
T 3q2o_A           73 AEI--SD--VVTYEFENIDYRCLQWLEKHAY-LP--QGSQ-LLSKT------------------QNRFTEKNAIEKAGLP  126 (389)
T ss_dssp             HHT--CS--EEEESCCCCCHHHHHHHHHHSC-CT--TCSH-HHHHT------------------TSHHHHHHHHHHTTCC
T ss_pred             HHh--CC--EeeeccccccHHHHHHHHhhCc-cC--CCHH-HHHHh------------------cCHHHHHHHHHHCCCC
Confidence            443  22  3322222223344566777776 33  3332 22211                  1344689999999999


Q ss_pred             e---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785         461 L---IFASDLDEAASLVNACKSFKLSIPLVVRLEGT  493 (525)
Q Consensus       461 v---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~  493 (525)
                      +   ..+.+.+++.+   +++++  |||||+|-...
T Consensus       127 ~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~~  157 (389)
T 3q2o_A          127 VATYRLVQNQEQLTE---AIAEL--SYPSVLKTTTG  157 (389)
T ss_dssp             CCCEEEESSHHHHHH---HHHHH--CSSEEEEESSC
T ss_pred             CCCeEEECCHHHHHH---HHHhc--CCCEEEEeCCC
Confidence            9   78899999887   45564  99999998654

>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*

Probab=85.51  E-value=0.52  Score=47.39  Aligned_cols=69  Identities=9%  Similarity=0.172  Sum_probs=45.1

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...++..|+|++  .+...++....                  +-...+++|+++|||+   ..+.+.+++.     +++
T Consensus       109 ~~~le~~gip~~--g~~~~~~~~~~------------------dK~~~k~~l~~~Gip~p~~~~~~~~~~~~-----~~~  163 (343)
T 1e4e_A          109 QGLFELSGIPFV--GCDIQSSAICM------------------DKSLTYIVAKNAGIATPAFWVINKDDRPV-----AAT  163 (343)
T ss_dssp             HHHHHHHTCCBS--SCCHHHHHHHH------------------SHHHHHHHHHHTTCBCCCEEEECTTCCCC-----GGG
T ss_pred             HHHHHHcCCCcc--CCCHHHHHHHh------------------CHHHHHHHHHHCCCCcCCEEEEechhhhh-----hhc
Confidence            346677899987  54444333321                  2336899999999998   6666666532     135


Q ss_pred             cCCCCcEEEEEecCChHHH
Q psy7785         480 FKLSIPLVVRLEGTNVQEG  498 (525)
Q Consensus       480 ~~~G~PVVlKi~~~~~~~~  498 (525)
                        .|||||+|-....-..|
T Consensus       164 --~~~PvvvKP~~~~~s~G  180 (343)
T 1e4e_A          164 --FTYPVFVKPARSGSSFG  180 (343)
T ss_dssp             --SCSCEEEEESSCCTTTT
T ss_pred             --cCCCEEEEeCCCCCCCC
Confidence              39999999876654333

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*

Probab=85.47  E-value=0.98  Score=44.00  Aligned_cols=69  Identities=17%  Similarity=0.244  Sum_probs=42.1

Q ss_pred             HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHH-----HHH
Q psy7785         404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAAS-----LVN  475 (525)
Q Consensus       404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~-----~~~  475 (525)
                      ..++..|+|++  ....+++....                  +-...+++|+++|||+   ..+.+. ++.+     ..+
T Consensus        74 ~~~e~~g~~~~--g~~~~~~~~~~------------------dK~~~~~~l~~~gi~~p~~~~~~~~-~~~~~~~~~~~~  132 (306)
T 1iow_A           74 GMLELMGLPYT--GSGVMASALSM------------------DKLRSKLLWQGAGLPVAPWVALTRA-EFEKGLSDKQLA  132 (306)
T ss_dssp             HHHHHHTCCBS--SCCHHHHHHHH------------------CHHHHHHHHHHTTCCBCCEEEEEHH-HHHHCCCTHHHH
T ss_pred             HHHHHcCCCcc--CCCHHHHHHHc------------------CHHHHHHHHHHCCCCCCCeEEEchh-hhhccchhhhhh
Confidence            35566799976  44333333321                  2336789999999999   455555 4433     000


Q ss_pred             HhhhcCCCCcEEEEEecCCh
Q psy7785         476 ACKSFKLSIPLVVRLEGTNV  495 (525)
Q Consensus       476 aa~~~~~G~PVVlKi~~~~~  495 (525)
                      .+++  .|||+|+|-....-
T Consensus       133 ~~~~--~~~p~vvKP~~g~~  150 (306)
T 1iow_A          133 EISA--LGLPVIVKPSREGS  150 (306)
T ss_dssp             HHHT--TCSSEEEEETTCCT
T ss_pred             HHhc--cCCCEEEEeCCCCC
Confidence            2345  39999999876543

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=82.27  E-value=26  Score=34.31  Aligned_cols=163  Identities=12%  Similarity=0.114  Sum_probs=88.0

Q ss_pred             CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785         329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG  402 (525)
Q Consensus       329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~  402 (525)
                      --|.| -|..+.+.+.+.++.+.+ .++|+++++-..|.   ...   ..+.+..++...   .+.||++..++++..++
T Consensus        10 vTPf~-dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~a   84 (294)
T 2ehh_A           10 ITPFK-EGEVDYEALGNLIEFHVD-NGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAA---GRIKVIAGTGGNATHEA   84 (294)
T ss_dssp             CCCEE-TTEECHHHHHHHHHHHHT-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TSSEEEEECCCSCHHHH
T ss_pred             ecCcC-CCCcCHHHHHHHHHHHHH-CCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCCHHHH
Confidence            34777 788898989999999886 48999998644432   122   234444444433   36888887766555555


Q ss_pred             HH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHH
Q psy7785         403 KR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAA  471 (525)
Q Consensus       403 ~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv  471 (525)
                      .+   ...+.|.       |.|...+.+..++.+.+..+. ...|+.. ..|+.           .|+.+    +.+...
T Consensus        85 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~  148 (294)
T 2ehh_A           85 VHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQE-VDIPIIIYNIPSR-----------TCVEI----SVDTMF  148 (294)
T ss_dssp             HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CCSCEEEEECHHH-----------HSCCC----CHHHHH
T ss_pred             HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCCcc-----------cCcCC----CHHHHH
Confidence            43   3345665       555444555555555444331 2344432 12110           02211    334334


Q ss_pred             HHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHH
Q psy7785         472 SLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDE  517 (525)
Q Consensus       472 ~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (525)
                      +   .+++.  .-=+-+|-.+.+...-.+++...+..+.++.-.|+
T Consensus       149 ~---La~~~--pnivgiKds~gd~~~~~~~~~~~~~~f~v~~G~d~  189 (294)
T 2ehh_A          149 K---LASEC--ENIVASKESTPNMDRISEIVKRLGESFSVLSGDDS  189 (294)
T ss_dssp             H---HHHHC--TTEEEEEECCSCHHHHHHHHHHHCTTSEEEESSGG
T ss_pred             H---HHhhC--CCEEEEEeCCCCHHHHHHHHHhcCCCeEEEECcHH
Confidence            3   23231  22245788888888777777652223444544343

>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*

Probab=82.21  E-value=0.79  Score=45.76  Aligned_cols=64  Identities=17%  Similarity=0.278  Sum_probs=42.4

Q ss_pred             HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785         403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS  479 (525)
Q Consensus       403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~  479 (525)
                      ...|+..|+|++  .+...++....                  +-...+++|+++|||+   ..+.+.+++     +. +
T Consensus        95 ~~~le~~gip~~--g~~~~~~~~~~------------------dK~~~k~~l~~~Gip~p~~~~~~~~~~~-----~~-~  148 (322)
T 2fb9_A           95 QGFLELLGKPYV--GAGVAASALCM------------------DKDLSKRVLAQAGVPVVPWVAVRKGEPP-----VV-P  148 (322)
T ss_dssp             HHHHHHHTCCBS--SCCHHHHHHHH------------------CHHHHHHHHHHTTCCCCCEEEEETTSCC-----CC-C
T ss_pred             HHHHHHcCCCee--CcCHHHHHHHc------------------CHHHHHHHHHHCCCCCCCEEEEECchhh-----hh-c
Confidence            456777899987  44333333221                  1336899999999999   566666541     12 4


Q ss_pred             cCCCCcEEEEEecCC
Q psy7785         480 FKLSIPLVVRLEGTN  494 (525)
Q Consensus       480 ~~~G~PVVlKi~~~~  494 (525)
                        .|||||+|-....
T Consensus       149 --~g~PvvvKP~~g~  161 (322)
T 2fb9_A          149 --FDPPFFVKPANTG  161 (322)
T ss_dssp             --SCSCEEEEETTCC
T ss_pred             --cCCCEEEEeCCCC
Confidence              4999999986654

>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*

Probab=82.05  E-value=2.7  Score=41.34  Aligned_cols=41  Identities=24%  Similarity=0.415  Sum_probs=30.4

Q ss_pred             HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785         449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEG  492 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~  492 (525)
                      ..+++|++.|||+   .+..+.+++.+.   +++...|||+|+|-..
T Consensus       101 ~~~~~l~~~gi~~P~~~~~~~~~~~~~~---~~~~~~~~P~vvKP~~  144 (324)
T 1z2n_X          101 EINALLIKNNIPIPNSFSVKSKEEVIQL---LQSKQLILPFIVKPEN  144 (324)
T ss_dssp             HHHHHHHHTTCCCSCEEEESSHHHHHHH---HHTTCSCSSEEEEESB
T ss_pred             HHHHHHHHCCCCCCCEEEeCCHHHHHHH---HHHcCCCCCEEEeeCC
Confidence            5788999999999   667788877663   3342125999999865

>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A

Probab=80.37  E-value=12  Score=35.37  Aligned_cols=123  Identities=10%  Similarity=-0.005  Sum_probs=65.7

Q ss_pred             CcEEEEecchhHHHH--HHHHHHHcCCC--------------CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785         302 GNIGCLVNGAGLAMA--TMDIIKLHGGE--------------PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG  365 (525)
Q Consensus       302 ~rIaIitnsGG~gvl--aaD~~~~~Gl~--------------~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~  365 (525)
                      .++.+||.||+.|+|  +++.+.+.|+.              +.|++.-.--...=..++.+-.-.+    |++ |..++
T Consensus        40 ~g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~s----da~-I~lpG  114 (216)
T 1ydh_A           40 RKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEA----EAF-IALPG  114 (216)
T ss_dssp             TTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSSCCSEEEEESSHHHHHHHHHHHC----SEE-EECSC
T ss_pred             CCCEEEECCCcccHhHHHHHHHHHcCCcEEEEechhcCccccccCCCCcccccCCHHHHHHHHHHhC----CEE-EEeCC
Confidence            468888887766777  55888888873              2333211000011112333323233    444 44567


Q ss_pred             cccChHHHHHHHHHHHHhcCCCCcEEEEeC-Cc--chHHHHHHHhhCCCC-------ccccCCHHHHHHHHHHhh
Q psy7785         366 GIVNCATIAKGLVNACKSFKLSIPLVVRLE-GT--NVQEGKRILDESKLP-------LIFASDLDEAASLVNACK  430 (525)
Q Consensus       366 ~~~~~~~ia~~i~~a~~~~~~~kPivv~~~-g~--~~~~~~~~L~~~Gvp-------vf~~~s~~~Av~Al~~l~  430 (525)
                      |.-..+++++.+.-..-.. ++|||++.-. |-  .-..-.+.+.+.|+-       ++.++++++++..+..+.
T Consensus       115 G~GTLdElfE~lt~~qlg~-~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee~~~~l~~~~  188 (216)
T 1ydh_A          115 GYGTMEELLEMITWSQLGI-HKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEYT  188 (216)
T ss_dssp             SHHHHHHHHHHHHHHHHTS-CCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEESSHHHHHHHHHHCC
T ss_pred             CccHHHHHHHHHHHHHhcc-cCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEeCCHHHHHHHHHHhc
Confidence            7655677887765443222 6899986532 21  111122344455541       222599999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	525
d1eucb1	148	c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta	3e-58
d1eucb1	148	c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta	2e-14
d2nu7b1	150	c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta	7e-58
d2nu7b1	150	c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta	3e-14
d2nu7b2	238	d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-	1e-29
d1eucb2	246	d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-	8e-27
d2csua3	163	c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chai	5e-17

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  188 bits (478), Expect = 3e-58
 Identities = 85/143 (59%), Positives = 110/143 (76%)

Query: 284 DPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESI 343
           +P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFLD+GGGV E  +
Sbjct: 1   EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQV 60

Query: 344 IQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403
            QAF+++++D  V+ ILVN+FGGIVNCA IA G+  AC+  +L +PLVVRLEGTNV E +
Sbjct: 61  YQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQ 120

Query: 404 RILDESKLPLIFASDLDEAASLV 426
            IL  S LP+  A DL++AA   
Sbjct: 121 NILTNSGLPITSAVDLEDAAKKA 143

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 68.3 bits (167), Expect = 2e-14
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAAN 520
           A  +  AC+  +L +PLVVRLEGTNV E + IL  S LP+  A DL++AA 
Sbjct: 91  ANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAK 141

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 150

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  187 bits (476), Expect = 7e-58
 Identities = 83/143 (58%), Positives = 106/143 (74%)

Query: 284 DPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESI 343
           DPRE  A+++ LNYV +DGNIGC+VNGAGLAM TMDI+KLHGGEPANFLDVGGG  +E +
Sbjct: 1   DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERV 60

Query: 344 IQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403
            +AF+II SD  VK +LVN+FGGIV C  IA G++ A     +++P+VVRLEG N + G 
Sbjct: 61  TEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGA 120

Query: 404 RILDESKLPLIFASDLDEAASLV 426
           + L +S L +I A  L +AA  V
Sbjct: 121 KKLADSGLNIIAAKGLTDAAQQV 143

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 150

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 68.3 bits (167), Expect = 3e-14
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 462 IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAAN 520
                   A  ++ A     +++P+VVRLEG N + G + L +S L +I A  L +AA 
Sbjct: 83  GIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQ 141

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  114 bits (286), Expect = 1e-29
 Identities = 69/247 (27%), Positives = 106/247 (42%), Gaps = 40/247 (16%)

Query: 36  ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95
           A      +    +V+K Q+ AGGRG          GV   N+ +DI    E  +G +L+T
Sbjct: 31  AEEAASKIGAGPWVVKCQVHAGGRGKAG-------GVKVVNSKEDIRAFAENWLGKRLVT 83

Query: 96  KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHL 155
            QT   G  VN+++V  + +I +E Y   V DR     V + S  GG +IE VA +TPHL
Sbjct: 84  YQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHL 143

Query: 156 VKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFR 215
           +  + +D   G      +++A  L  +G L  +       L  +FL              
Sbjct: 144 IHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLER------------ 191

Query: 216 GDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIF 275
                                D   +EINPLV T + ++I +D K+  D NA FRQ ++ 
Sbjct: 192 ---------------------DLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLR 230

Query: 276 SQNEVSE 282
              + S+
Sbjct: 231 EMRDQSQ 237

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  106 bits (265), Expect = 8e-27
 Identities = 117/248 (47%), Positives = 156/248 (62%), Gaps = 33/248 (13%)

Query: 36  ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95
           A    K LN KE V+KAQILAGGRG G F +G K GVH T + + +  + ++MIG+ L T
Sbjct: 32  ALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLAT 91

Query: 96  KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHL 155
           KQTPK G+ VNKVMVA++++I+RETY  I+ DR  NGPV++ SP GG DIE VAA  P L
Sbjct: 92  KQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPEL 151

Query: 156 VKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFR 215
           +    ID+ +GI +S AQ +A+ L F G L+ +AA +++KL+NLFL              
Sbjct: 152 IFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKI------------ 199

Query: 216 GDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIF 275
                                DATQ+E+NP  ET E +V+  DAKINFDDNAEFRQK+IF
Sbjct: 200 ---------------------DATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF 238

Query: 276 SQNEVSES 283
           + ++ SE+
Sbjct: 239 AMDDKSEN 246

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 76.3 bits (187), Expect = 5e-17
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 27/146 (18%)

Query: 303 NIGCLVNGAGLAMATMDIIKLHGGEPA---------------------NFLDVGGGVNEE 341
            +  + N  G  + T D +   G + A                     N +D+      E
Sbjct: 5   KVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGE 64

Query: 342 SIIQAFRIISSDSNVKCILVNVF---GGIVNCATIAKGLVNACKSFKLSIP-LVVRLEGT 397
              +  +++  D NV  ++          +     A+G++ A K      P L + + G 
Sbjct: 65  DYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGY 124

Query: 398 NVQEGKRILDESKLPLIFASDLDEAA 423
             ++ K +L+++ +P       ++ A
Sbjct: 125 VSEKAKELLEKNGIPTY--ERPEDVA 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	525
d2nu7b2	238	Succinyl-CoA synthetase, beta-chain, N-terminal do	100.0
d1eucb2	246	Succinyl-CoA synthetase, beta-chain, N-terminal do	100.0
d1eucb1	148	Succinyl-CoA synthetase, beta-chain, C-terminal do	99.96
d2nu7b1	150	Succinyl-CoA synthetase, beta-chain, C-terminal do	99.96
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	99.86
d1vkza3	220	Glycinamide ribonucleotide synthetase (GAR-syn), d	99.01
d1gsoa3	224	Glycinamide ribonucleotide synthetase (GAR-syn), d	99.01
d1a9xa6	259	Carbamoyl phosphate synthetase (CPS), large subuni	98.87
d1a9xa5	275	Carbamoyl phosphate synthetase (CPS), large subuni	98.76
d1ulza3	214	Biotin carboxylase (BC), domain 2 {Aquifex aeolicu	98.72
d2j9ga3	216	Biotin carboxylase (BC), domain 2 {Escherichia col	98.71
d1iowa2	210	D-ala-D-ala ligase, C-domain {Escherichia coli, ge	98.53
d1eucb1	148	Succinyl-CoA synthetase, beta-chain, C-terminal do	98.43
d1kjqa3	206	Glycinamide ribonucleotide transformylase PurT, do	98.29
d1w96a3	267	Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye	98.26
d2nu7b1	150	Succinyl-CoA synthetase, beta-chain, C-terminal do	98.25
d1eucb2	246	Succinyl-CoA synthetase, beta-chain, N-terminal do	98.24
d1ehia2	228	D-alanine:D-lactate ligase VanA, C-domain {Leucono	98.23
d2nu7b2	238	Succinyl-CoA synthetase, beta-chain, N-terminal do	98.15
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	98.08
d2r7ka2	238	5-formaminoimidazole-4-carboxamide ribonucleotide	98.06
d3etja3	198	N5-carboxyaminoimidazole ribonucleotide synthetase	97.89
d1uc8a2	192	Lysine biosynthesis enzyme LysX ATP-binding domain	97.79
d1oi7a2	167	Succinyl-CoA synthetase, alpha-chain, C-terminal d	97.68
d1e4ea2	211	D-alanine:D-lactate ligase VanA, C-domain {Enteroc	97.64
d2r85a2	235	5-formaminoimidazole-4-carboxamide ribonucleotide	97.59
d1euca2	176	Succinyl-CoA synthetase, alpha-chain, C-terminal d	97.58
d2nu7a2	166	Succinyl-CoA synthetase, alpha-chain, C-terminal d	97.09
d1vkza3	220	Glycinamide ribonucleotide synthetase (GAR-syn), d	96.01
d1ulza3	214	Biotin carboxylase (BC), domain 2 {Aquifex aeolicu	95.61
d1a9xa5	275	Carbamoyl phosphate synthetase (CPS), large subuni	95.32
d1gsoa3	224	Glycinamide ribonucleotide synthetase (GAR-syn), d	95.26
d1i7na2	206	Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116	95.0
d2j9ga3	216	Biotin carboxylase (BC), domain 2 {Escherichia col	94.69
d3etja3	198	N5-carboxyaminoimidazole ribonucleotide synthetase	94.6
d1kjqa3	206	Glycinamide ribonucleotide transformylase PurT, do	94.34
d1a9xa6	259	Carbamoyl phosphate synthetase (CPS), large subuni	93.64
d1uc8a2	192	Lysine biosynthesis enzyme LysX ATP-binding domain	93.35
d1gsaa2	192	Prokaryotic glutathione synthetase, C-domain {Esch	91.17
d1w96a3	267	Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye	89.56
d1iowa2	210	D-ala-D-ala ligase, C-domain {Escherichia coli, ge	88.13
d1e4ea2	211	D-alanine:D-lactate ligase VanA, C-domain {Enteroc	83.89
d2r7ka2	238	5-formaminoimidazole-4-carboxamide ribonucleotide	82.46
d1ehia2	228	D-alanine:D-lactate ligase VanA, C-domain {Leucono	82.29

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-44  Score=353.15  Aligned_cols=232  Identities=31%  Similarity=0.468  Sum_probs=210.0

Q ss_pred             cccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHH
Q psy7785          10 ANFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILE   86 (525)
Q Consensus        10 ~~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~   86 (525)
                      .+.||++|+   +||||||++.+++|++||.++++++||+|||+|+|...+||+|       +|||+++.+.+++.+++.
T Consensus         2 ~L~E~eaK~lL~~yGIpvp~~~~a~s~~ea~~~a~~iG~~pvVlKaq~~~~hk~~-------~GGV~~~~~~~e~~~~a~   74 (238)
T d2nu7b2           2 NLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGK-------AGGVKVVNSKEDIRAFAE   74 (238)
T ss_dssp             BCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTT-------TTCEEEECSHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHhCCCcEEEEEeeccccccc-------ceEEEeccccHHHHHHHH
Confidence            367999999   9999999999999999999999999966999999977788877       899999999999999999


Q ss_pred             HHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec-CCCCcccccccccCCCeEEEEecCCCC
Q psy7785          87 KMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS-PSGGTDIENVAAKTPHLVKTIPIDVHQ  165 (525)
Q Consensus        87 ~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g-~~GGv~iE~~~~~~~~~~~~~~l~p~~  165 (525)
                      +++++.+.++++.+.|..+++++||+|+++++|+|+|+++||.| ||++++| ..||+++|.+.+.+|..+...+++|..
T Consensus        75 ~~~~~~~~~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~~-g~~~l~~s~~GGv~ie~~~~~~~~~~~~~~~~~~~  153 (238)
T d2nu7b2          75 NWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSS-RRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLT  153 (238)
T ss_dssp             HHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTT-TEEEEEEESCTTSCHHHHHHHCGGGEEEEECCTTT
T ss_pred             HHhCcceeeeccccCCcccceeeecceeecccceEEEEEEeccC-CceEEEEecccceeeEeeeccccccccccccCccc
Confidence            99998887777777888899999999999999999999999999 5665555 459999999999888888788899988


Q ss_pred             CCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeec
Q psy7785         166 GITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINP  245 (525)
Q Consensus       166 ~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNP  245 (525)
                      ++....+..++..++.                                 ++.+...+.+++.++|++|.+.+++++||||
T Consensus       154 ~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~i~~l~~~~~~~~~~~lEINP  200 (238)
T d2nu7b2         154 GPMPYQGRELAFKLGL---------------------------------EGKLVQQFTKIFMGLATIFLERDLALIEINP  200 (238)
T ss_dssp             CCCHHHHHHHHHHTTC---------------------------------CTHHHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccchhhHHHHHHhcCC---------------------------------cchhhHHHHHHHHHhhHhhhcCCceEEeecc
Confidence            8888888877776654                                 5568999999999999999999999999999


Q ss_pred             eeEecCCcEEEeeeEEEecCCchhccccccccCCCCC
Q psy7785         246 LVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSE  282 (525)
Q Consensus       246 l~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~  282 (525)
                      |+++++|+++|+||||.+||||.|||+++..++|++|
T Consensus       201 Liv~~~G~vvAlDAki~lDdnA~fr~~~~~~~~d~~~  237 (238)
T d2nu7b2         201 LVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQ  237 (238)
T ss_dssp             EEEETTSCEEESCCEEEECGGGGGGCHHHHHTCCGGG
T ss_pred             eEECCCCCEEEEEeEEeecCcchhcChhHHhhcCcCC
Confidence            9999999899999999999999999999999988764

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=7.8e-42  Score=336.04  Aligned_cols=239  Identities=49%  Similarity=0.720  Sum_probs=206.0

Q ss_pred             ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785          11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK   87 (525)
Q Consensus        11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~   87 (525)
                      +.|||+|+   +||||+|++.+++|++||.++++++||+|||+|+|+++++|||.++|+++.|||++..|++|+.+++++
T Consensus         4 L~E~eaK~lL~~yGIpvp~~~~a~s~~ea~~~a~~ig~~~vVlK~qv~~g~r~~~~~~k~~~GgV~~~~~~ee~~~~a~~   83 (246)
T d1eucb2           4 LQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQ   83 (246)
T ss_dssp             CCHHHHHHHHHTTTCCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCCTTCEETTSCBCSEEEESCHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHHhCCCeEEEEEeeccccccccccccCCcceEEEecChhHHHHHhhh
Confidence            57999999   999999999999999999999999997799999999999999998888889999999999999999999


Q ss_pred             HhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCC
Q psy7785          88 MIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGI  167 (525)
Q Consensus        88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l  167 (525)
                      ++.+.....+..+.+..+.+++||+|++++.|+|+|+++|+.|++++++++..||+++|.+.+..+.........+...+
T Consensus        84 ~~~~~~~~~~~~~~~~~v~~vlve~~~~~~~E~~vg~~~D~~~g~~~l~~~~~GGv~ve~~~~~~~~~~~~~~~~~~~~~  163 (246)
T d1eucb2          84 MIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGI  163 (246)
T ss_dssp             TTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEEGGGTEEEEEEESSCSSCHHHHHHHCGGGCEEEECBTTTBC
T ss_pred             hhcchhhhhhccccccccccceehhcccccceeeeeeeecccccceeEEEeechhhhhhhhhhhccccchhhcccccccc
Confidence            99877666566666777899999999999999999999999996666666657999999999887765544555554444


Q ss_pred             CHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeecee
Q psy7785         168 TESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLV  247 (525)
Q Consensus       168 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl~  247 (525)
                      +......+                     +.++++            ++.+...+...+.+++.++.+.++.++|||||+
T Consensus       164 ~~~~~~~~---------------------~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~d~~~iEINPLi  210 (246)
T d1eucb2         164 KDSQAQRM---------------------AENLGF------------LGPLQNQAADQIKKLYNLFLKIDATQVEVNPFG  210 (246)
T ss_dssp             CHHHHHHH---------------------HHHTTC------------CTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cchHHHHH---------------------HHhcCC------------chhhhHHHHHHHHHHHHHHhcCCccEEeeeceE
Confidence            44433333                     333322            566888999999999999999999999999999


Q ss_pred             EecCCcEEEeeeEEEecCCchhccccccccCCCCC
Q psy7785         248 ETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSE  282 (525)
Q Consensus       248 v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~  282 (525)
                      ++++|+++||||||++|+||.|||+++..++|++|
T Consensus       211 v~~dG~vvAlDAri~lDdnA~~r~~~~~~~~d~~~  245 (246)
T d1eucb2         211 ETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSE  245 (246)
T ss_dssp             EETTTEEEECCEEEEECGGGGGGCHHHHHTCCCTT
T ss_pred             ECCCCCEEEEEeEEeecCcchhcCccHHHhhCCCC
Confidence            99999899999999999999999999999988865

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=5.4e-29  Score=222.03  Aligned_cols=146  Identities=59%  Similarity=1.028  Sum_probs=140.1

Q ss_pred             ChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe
Q psy7785         284 DPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV  363 (525)
Q Consensus       284 ~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~  363 (525)
                      ||.|.++..++|+|+++.|+||+|.||+|++|.++|.+..+|++|+||+|++|.++.++++++++++++||+|++||||+
T Consensus         1 dp~E~~a~~~~l~yv~LdG~IG~i~NGAGlaMaTmD~i~~~Gg~pANFlDiGGga~~e~v~~al~iil~d~~Vk~IlINI   80 (148)
T d1eucb1           1 EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNI   80 (148)
T ss_dssp             CHHHHHHHHTTCEEEECSCSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSSCCHHHHHHHHHHTTSCTTCCEEEEEE
T ss_pred             ChhhHHHHHcCCcEEEecCcEEEEecCCccchhHHHHHHHcCCCeeeEEecCCCCCHHHHHHHHHHHHCCCCccEEEEEe
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785         364 FGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNAC  429 (525)
Q Consensus       364 ~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l  429 (525)
                      |+|++.|+.+|++|+++.++.+.++|+|+++.|++.++++++|++.|+|++.++++++|++.+...
T Consensus        81 fGGI~rcD~vA~GIv~A~~e~~~~iPiVVRL~Gtn~eeg~~iL~~sgl~i~~~~~l~eAa~~aV~~  146 (148)
T d1eucb1          81 FGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVAS  146 (148)
T ss_dssp             ECSSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHTTCSSEEECSSHHHHHHHHHHT
T ss_pred             eEeehhHHHHHHHHHHHHHhcCCCccEEEEeccCChHHHHHHHHHCCCCeEEeCCHHHHHHHHHHh
Confidence            999999999999999999987789999999999999999999999999988779999999887654

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.7e-29  Score=222.85  Aligned_cols=147  Identities=57%  Similarity=0.973  Sum_probs=141.7

Q ss_pred             ChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe
Q psy7785         284 DPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV  363 (525)
Q Consensus       284 ~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~  363 (525)
                      +|.|.++..++++|+++.|+||+|+||+|++|.++|++..+|++|+||+|++|.++.++++++++++++||+|++||||+
T Consensus         1 d~~E~~a~~~~l~yv~LdG~Ig~i~nGAGlamaTmD~i~~~Gg~pANFlDiGG~a~~e~v~~al~lil~d~~vk~IlINi   80 (150)
T d2nu7b1           1 DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNI   80 (150)
T ss_dssp             CHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred             CHhHHHHHHcCCcEEEecCcEEEEEcCCccchhhHHHHHHCCCCeeEEEecCCCccHHHHHHHHHHHHcCCCCCEEEEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785         364 FGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACK  430 (525)
Q Consensus       364 ~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~  430 (525)
                      ++++++|+.+|++|+++.++.+.++|||+++.|++.++++++|++.|+|++.++++++|++.+.++.
T Consensus        81 fGGI~rcd~vA~GIv~A~k~~~~~iPiVVRl~Gtn~eeg~~iL~~~gl~i~~~~~l~eAa~~aV~la  147 (150)
T d2nu7b1          81 FGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAV  147 (150)
T ss_dssp             ESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHHHCSSEEECSSHHHHHHHHHHTT
T ss_pred             eeeeehhHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHHHCCCCeEEeCCHHHHHHHHHHHh
Confidence            9999999999999999999887899999999999999999999999999888899999999988764

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=1e-21  Score=179.69  Aligned_cols=132  Identities=17%  Similarity=0.229  Sum_probs=111.3

Q ss_pred             cCCcEEEEecchhHHHHHHHHHHHcCCC---------------------CCCeeeecCCCCHHHHHHHHHHHhcCCCccE
Q psy7785         300 MDGNIGCLVNGAGLAMATMDIIKLHGGE---------------------PANFLDVGGGVNEESIIQAFRIISSDSNVKC  358 (525)
Q Consensus       300 ~~~rIaIitnsGG~gvlaaD~~~~~Gl~---------------------~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~  358 (525)
                      .|+||+|||||||.|++++|.++..|++                     +.||+|++++.+++.|.++++++++||++|+
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~d~~vd~   81 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDM   81 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSE
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccCCCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHcCCCcCE
Confidence            3679999999999999999999999983                     4899999999999999999999999999999


Q ss_pred             EEEEeccc---ccChHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhccc
Q psy7785         359 ILVNVFGG---IVNCATIAKGLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFK  433 (525)
Q Consensus       359 vlv~~~~~---~~~~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~  433 (525)
                      +++.+...   .....+.++.++.+.++...+||++++|.| ....+.++.|+++|||+|  ++|++|++++.++.+|.
T Consensus        82 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpv~~~~~~~~~~~~~~~~l~~~Gip~f--~~pe~a~~Al~~l~~~~  158 (163)
T d2csua3          82 LIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIPTY--ERPEDVASAAYALVEQA  158 (163)
T ss_dssp             EEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTTTCCEE--SSHHHHHHHHHHHHHHH
T ss_pred             EEEeeccCCcccccHHHHHHHHHHHHHHhcCCCcEEEEECCCCChHHHHHHHHHCCCCcC--CCHHHHHHHHHHHHHHH
Confidence            98754321   233456777788877665567999987765 466778999999999999  99999999999987653

>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=1.5e-09  Score=101.95  Aligned_cols=92  Identities=20%  Similarity=0.141  Sum_probs=75.9

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ++|||+|++.+++|.+|+.++++++|| |||||+....+|           -||.+..|.+++.++++++.....     
T Consensus        11 ~~gIptp~~~~~~~~~e~~~~~~~ig~-PvVvKP~~~~gs-----------~Gv~~v~~~~el~~a~~~~~~~~~-----   73 (220)
T d1vkza3          11 KYGIRTARFEVAETPEELREKIKKFSP-PYVIKADGLARG-----------KGVLILDSKEETIEKGSKLIIGEL-----   73 (220)
T ss_dssp             HTTCCCCCEEEESSHHHHHHHHTTSCS-SEEEEESSCCSS-----------CCEEEESSHHHHHHHHHHHHHTSS-----
T ss_pred             HCCCCCCCeEEeCCHHHHHHHHHHcCC-CEEEEecccccc-----------ccceeeccHHHHHHHhhhhccccc-----
Confidence            899999999999999999999999997 999999655433           289999999999999999875432     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                        .+..-..++||+|+. +.|+.+....|...
T Consensus        74 --~~~~~~~vliEe~i~-g~e~~v~~~~~~~~  102 (220)
T d1vkza3          74 --IKGVKGPVVIDEFLA-GNELSAMAVVNGRN  102 (220)
T ss_dssp             --STTCCSCEEEEECCC-SEEEEEEEEEETTE
T ss_pred             --cccccceEeeecccc-cccceeEEEEeCCE
Confidence              223346799999997 78998888877543

>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=2.6e-10  Score=108.41  Aligned_cols=92  Identities=18%  Similarity=0.284  Sum_probs=74.9

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      +||||||++..+++.+||.++++++++ |+|||++.+.+|  |         ||.+..+.+++.++++.++....     
T Consensus        11 ~~~IPt~~~~~~~~~~ea~~~~~~~~~-P~VvK~~~~~~g--k---------Gv~i~~~~~e~~~a~~~~~~~~~-----   73 (224)
T d1gsoa3          11 RHKIPTAEYQNFTEVEPALAYLREKGA-PIVIKADGLAAG--K---------GVIVAMTLEEAEAAVHDMLAGNA-----   73 (224)
T ss_dssp             HTTCCBCCEEEESSSSHHHHHHHHHCS-SEEEEC--------C---------CEEEESSHHHHHHHHTTTTCSCC-----
T ss_pred             HcCCCCCCceEeCCHHHHHHHHHHcCC-CEEEEeCCcccc--c---------ceeeehhHHHHHHHHHHHHhccc-----
Confidence            899999999999999999999999997 999999988775  4         79999999999999998876432     


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                        .+.....|+|||++. |.|+.+.+..|...
T Consensus        74 --~~~~~~~vliEefl~-G~E~s~~~i~dg~~  102 (224)
T d1gsoa3          74 --FGDAGHRIVIEEFLD-GEEASFIVMVDGEH  102 (224)
T ss_dssp             --TTCTTCCEEEEECCC-EEEEEEEEEEESSC
T ss_pred             --ccccCceEEeecccc-cccceeEEEeccCc
Confidence              244457899999997 79999999988654

>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=5.4e-09  Score=101.21  Aligned_cols=91  Identities=12%  Similarity=0.173  Sum_probs=68.8

Q ss_pred             hhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          17 KPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        17 k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      .++.|||+|++..++|.+|+.++++++|| ||+||+....||  +         |+.+..+.+++.+++++.....    
T Consensus         6 l~~lgi~~p~~~~v~s~~ea~~~a~~iGf-PvivKps~~~gG--~---------G~~iv~~~~el~~~~~~a~~~~----   69 (259)
T d1a9xa6           6 VERLKLKQPANATVTAIEMAVEKAKEIGY-PLVVRASYVLGG--R---------AMEIVYDEADLRRYFQTAVSVS----   69 (259)
T ss_dssp             HHHHTCCCCCEEECCSHHHHHHHHHHHCS-SEEEEC------------------CEEEECSHHHHHHHHHHCC-------
T ss_pred             HHHCCCCCCCceEECCHHHHHHHHHHhCC-CEEEEECCCCCC--C---------ccEeecCHHHHHHHhhhhhccc----
Confidence            34789999999999999999999999998 999998655454  3         7888899999998888754321    


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                             ....++||+++...+|+-+-+.+|...
T Consensus        70 -------~~~~vlie~~i~~~~Eiev~~i~Dg~~   96 (259)
T d1a9xa6          70 -------NDAPVLLDHFLDDAVEVDVDAICDGEM   96 (259)
T ss_dssp             ------------EEEBCCTTCEEEEEEEEECSSC
T ss_pred             -------ccchhhhhhhcCCCeEEEEEEEEeCCc
Confidence                   135699999999999999999999653

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.4e-08  Score=98.96  Aligned_cols=132  Identities=15%  Similarity=0.197  Sum_probs=91.9

Q ss_pred             hhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785          16 VKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT   95 (525)
Q Consensus        16 ~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~   95 (525)
                      ..++.|||+|++..++|.+|+.++++++|| ||+||+....+|  +         |+.+..+.+++.+++++.....   
T Consensus         8 ~~~~~gip~~~~~~~~~~~ea~~~~~~ig~-PvviKp~~~~gg--~---------G~~~v~~~~el~~~~~~a~~~~---   72 (275)
T d1a9xa5           8 AMKKIGLETARSGIAHTMEEALAVAADVGF-PCIIRPSFTMGG--S---------GGGIAYNREEFEEICARGLDLS---   72 (275)
T ss_dssp             HHHHTTCCCCSEEEESSHHHHHHHHHHHCS-SEEEEETTCCTT--T---------TCEEESSHHHHHHHHHHHHHHC---
T ss_pred             HHHHCCCCCCCceEeCCHHHHHHHHHHcCC-CEEEEECCCCCC--C---------ceEEeeCHHHHHHHHHHHHhhC---
Confidence            344899999999999999999999999998 999999655443  3         6788889999999988865421   


Q ss_pred             ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCCCHHHHHHH
Q psy7785          96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDI  175 (525)
Q Consensus        96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l~~~~a~~~  175 (525)
                            +  ...++||+++.+.+|+.+-+.+|..-  ..++.. ...- .+....++-+.   +...|...|+...-+++
T Consensus        73 ------~--~~~v~iEe~l~g~~e~~v~~~~d~~g--~~~~~~-~~~~-~~~~~~~~~~~---~~~aP~~~L~~~~~~~i  137 (275)
T d1a9xa5          73 ------P--TKELLIDESLIGWKEYEMEVVRDKND--NCIIVC-SIEN-FDAMGIHTGDS---ITVAPAQTLTDKEYQIM  137 (275)
T ss_dssp             ------T--TSCEEEEECCTTSEEEEEEEEECTTC--CEEEEE-EEEE-SSCTTSCGGGS---CEEESCCSCCHHHHHHH
T ss_pred             ------C--CCcEEEeeecCCchhheeeeEEecCC--CEEEEE-eecc-ccccCcccCce---eEEcCCCcCCHHHHHHH
Confidence                  1  25699999999889999999999653  444433 2221 22222222222   23344445787665555


Q ss_pred             HH
Q psy7785         176 AD  177 (525)
Q Consensus       176 ~~  177 (525)
                      .+
T Consensus       138 ~~  139 (275)
T d1a9xa5         138 RN  139 (275)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.72  E-value=2.1e-08  Score=93.62  Aligned_cols=99  Identities=14%  Similarity=0.276  Sum_probs=75.2

Q ss_pred             hCCCCC-CCc-cccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          19 VSTVHS-TDK-VCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        19 ~~GIpv-p~~-~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      ++|||+ |.+ .+++|.+|+.++++++|| |||||+....++           -||.+..+.+++..+++........  
T Consensus        10 ~aGvP~~p~~~~~v~s~~ea~~~~~~ig~-P~vvKP~~~~~s-----------~gv~~v~~~~el~~a~~~~~~~~~~--   75 (214)
T d1ulza3          10 KAGVPVVPGSDGVLKSLEEAKALAREIGY-PVLLKATAGGGG-----------RGIRICRNEEELVKNYEQASREAEK--   75 (214)
T ss_dssp             HTTCCBCCBCSSSCCCHHHHHHHHHHHCS-SEEEEECSSSSC-----------CSCEEESSHHHHHHHHHHHHHHHHH--
T ss_pred             HcCCCcCCCcCCCCCCHHHHHHHHHHcCC-CEEEeeccccCC-----------ccceeeeccHHHHHHHHHHHHHHHH--
Confidence            899997 443 568999999999999998 999999655433           2788899999999888877654331  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                           ......++|||++++..+....+.+|..  +.+..++
T Consensus        76 -----~~~~~~viiEe~i~G~e~~~~~~~~d~~--~~~~~i~  110 (214)
T d1ulza3          76 -----AFGRGDLLLEKFIENPKHIEYQVLGDKH--GNVIHLG  110 (214)
T ss_dssp             -----TTSCCCEEEEECCCSCEEEEEEEEECTT--SCEEEEE
T ss_pred             -----hcCCCCceeheeecCcceeeEEEEEcCC--CeEEEEe
Confidence                 1113569999999977777788888876  3555554

>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=6.1e-08  Score=90.87  Aligned_cols=95  Identities=16%  Similarity=0.178  Sum_probs=75.4

Q ss_pred             hhhCCCCCCC---ccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccc
Q psy7785          17 KPVSTVHSTD---KVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL   93 (525)
Q Consensus        17 k~~~GIpvp~---~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~   93 (525)
                      +++.|||+.+   +.+++|.+|+.++++++|| ||+||+-...+||           ||.+..+.++++++++..+....
T Consensus         9 ~~~~GvP~vp~~~~~~~~s~dea~~~a~~iG~-PvivKp~~~~ggr-----------Gv~~v~~~~el~~a~~~~~~ea~   76 (216)
T d2j9ga3           9 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGY-PVIIKASGGGGGR-----------GMRVVRGDAELAQSISMTRAEAK   76 (216)
T ss_dssp             HHHHTCCBCCBCSSCCCSCHHHHHHHHHHHCS-SEEEEEEEEETTE-----------EEEEECSHHHHHHHHHHHHHHTC
T ss_pred             HHHcCcCCCCCCCCCCCCCHHHHHHHHHHcCC-CEEEecccccCCc-----------eeEeecchhHHHHHHHHHHHHHH
Confidence            3489999643   3578999999999999998 9999996554432           78889999999999998875322


Q ss_pred             ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                         .    ...-..|+||+++++.+|..+.+.+|...
T Consensus        77 ---~----~~~~~~vlvE~~i~g~~~~~~~i~~dg~~  106 (216)
T d2j9ga3          77 ---A----AFSNDMVYMEKYLENPRHVEIQVLADGQG  106 (216)
T ss_dssp             ---------CCCCCEEEEECCSSCEEEEEEEEEESSS
T ss_pred             ---H----hcCCCceEeeeeecCcccceeEEEEcCCC
Confidence               1    11135699999999889999999999886

>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-ala-D-ala ligase, C-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=98.53  E-value=9.5e-07  Score=81.22  Aligned_cols=86  Identities=13%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             hCCCCCCCccccCC-------HHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcc
Q psy7785          19 VSTVHSTDKVCLED-------ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH   91 (525)
Q Consensus        19 ~~GIpvp~~~~~~~-------~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~   91 (525)
                      ++|||||++.++++       .+++..+...+|| |+|+|+..-.+|  +         ||.+..+.+++.++++.+...
T Consensus        10 ~~Giptp~~~~~~~~~~~~~~~~~~~~~~~~l~~-P~vvKP~~g~~s--~---------Gv~~v~~~~el~~~~~~~~~~   77 (210)
T d1iowa2          10 GAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL-PVIVKPSREGSS--V---------GMSKVVAENALQDALRLAFQH   77 (210)
T ss_dssp             HTTCCBCCEEEEEHHHHHHCCCTHHHHHHHTTCS-SEEEEETTCCTT--T---------TCEEESSGGGHHHHHHHHTTT
T ss_pred             HcCCCCCCeEEEechhhcccchHHHHHHHHhcCC-CEEEeeccccCc--e---------ecccccchhhhhHHHHHhhcc
Confidence            89999999998853       4567777888997 999999544332  2         788888999999888766421


Q ss_pred             ccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          92 KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        92 ~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                                   ...++||++++ +.|+.+.+..|...
T Consensus        78 -------------~~~vlve~~i~-g~e~~~~v~~~~~~  102 (210)
T d1iowa2          78 -------------DEEVLIEKWLS-GPEFTVAILGEEIL  102 (210)
T ss_dssp             -------------CSEEEEEECCC-CCEEEEEEETTEEC
T ss_pred             -------------Ccccccccccc-CceeEEEeecCccc
Confidence                         25799999997 78999888766543

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.43  E-value=1.6e-07  Score=82.26  Aligned_cols=52  Identities=48%  Similarity=0.778  Sum_probs=44.7

Q ss_pred             HHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhHhC
Q psy7785         474 VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFILA  525 (525)
Q Consensus       474 ~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (525)
                      +++.+++.+-.|+|+++.|||++|||+||+++++++++++||+||++.||.+
T Consensus        95 v~A~~e~~~~iPiVVRL~Gtn~eeg~~iL~~sgl~i~~~~~l~eAa~~aV~~  146 (148)
T d1eucb1          95 TKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVAS  146 (148)
T ss_dssp             HHHHHHHTCCSCEEEEEESTTHHHHHHHHHTTCSSEEECSSHHHHHHHHHHT
T ss_pred             HHHHHhcCCCccEEEEeccCChHHHHHHHHHCCCCeEEeCCHHHHHHHHHHh
Confidence            3344444347899999999999999999999999999999999999999853

>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide transformylase PurT, domain 2
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=1.2e-06  Score=79.93  Aligned_cols=91  Identities=12%  Similarity=0.177  Sum_probs=68.9

Q ss_pred             hhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785          18 PVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ   97 (525)
Q Consensus        18 ~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~   97 (525)
                      ++.|||||++..+.|.+|+.++++++|| |||||+..-.+|           .||.+..|.+++.++++.......    
T Consensus        11 ~~~Gip~p~~~~v~s~~dl~~~~~~ig~-PvVvKP~~g~gs-----------~gv~~v~~~~el~~a~~~~~~~~~----   74 (206)
T d1kjqa3          11 EELQLPTSTYRFADSESLFREAVADIGY-PCIVKPVMSSSG-----------KGQTFIRSAEQLAQAWKYAQQGGR----   74 (206)
T ss_dssp             TTSCCCBCCEEEESSHHHHHHHHHHHCS-SEEEEESCC--------------CCCEEECSGGGHHHHHHHHHHHSG----
T ss_pred             HHCCCCCCCCeEECCHHHHHHHHHHhCC-CEEEeeccCCcc-----------CCceEEcCHHHHHHHHHHHHhhcc----
Confidence            3689999999999999999999999998 999999644333           267788899999988887654221    


Q ss_pred             CCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                         .+  ...++++++.....|..+....+..
T Consensus        75 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~  101 (206)
T d1kjqa3          75 ---AG--AGRVIVEGVVKFDFEITLLTVSAVD  101 (206)
T ss_dssp             ---GG--CCCEEEEECCCCSEEEEEEEEEETT
T ss_pred             ---cC--cceeeeeeccccceeeeeeeeecCC
Confidence               11  2446777777777888888887753

>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Acetyl-CoA carboxylase, BC-M subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=1.3e-06  Score=84.24  Aligned_cols=83  Identities=17%  Similarity=0.233  Sum_probs=65.9

Q ss_pred             CCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccCCCCCcc
Q psy7785          25 TDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGIN  104 (525)
Q Consensus        25 p~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~  104 (525)
                      ++...++|.+|+.++++++|| |||||+-...+|  +         ||.+..+.+++.++++.......           
T Consensus        44 ~~~~~v~s~eea~~~a~~igf-PvvVKP~~~~gs--~---------Gv~iv~~~~el~~a~~~a~~~s~-----------  100 (267)
T d1w96a3          44 YQKGCCTSPEDGLQKAKRIGF-PVMIKASEGGGG--K---------GIRQVEREEDFIALYHQAANEIP-----------  100 (267)
T ss_dssp             HGGGSCSSHHHHHHHHHHHCS-SEEEEETTCCTT--T---------TEEEECSHHHHHHHHHHHHHHST-----------
T ss_pred             ccccccCCHHHHHHHHHhcCC-CEEEEeecccCC--e---------eEEeecccchhhhhhhhhhhhcc-----------
Confidence            444568899999999999998 999999533333  3         78899999999999888765311           


Q ss_pred             cCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785         105 VNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus       105 ~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                      -..++||||+++.+|..+.+..|..-
T Consensus       101 ~~~vlVEe~I~G~~~~~~~~~~~~~~  126 (267)
T d1w96a3         101 GSPIFIMKLAGRARHLEVQLLADQYG  126 (267)
T ss_dssp             TCCEEEEECCCSCEEEEEEEEECTTS
T ss_pred             cchhhhhhhccchhhhhhhheeccCc
Confidence            24699999999888888888888754

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=6.1e-07  Score=78.81  Aligned_cols=51  Identities=35%  Similarity=0.556  Sum_probs=44.1

Q ss_pred             HHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhHh
Q psy7785         474 VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFIL  524 (525)
Q Consensus       474 ~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (525)
                      +++.++..+..|+|+++.|||++||++||+++++++++++||+||++.+|.
T Consensus        95 v~A~k~~~~~iPiVVRl~Gtn~eeg~~iL~~~gl~i~~~~~l~eAa~~aV~  145 (150)
T d2nu7b1          95 IGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVA  145 (150)
T ss_dssp             HHHHHHHTCCSCEEEEEESTTHHHHHHHHHHHCSSEEECSSHHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEecCCCHHHHHHHHHHCCCCeEEeCCHHHHHHHHHH
Confidence            334444435789999999999999999999999999999999999999984

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.24  E-value=3.8e-07  Score=87.08  Aligned_cols=42  Identities=17%  Similarity=0.351  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCC-cEEEEEe
Q psy7785         445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSI-PLVVRLE  491 (525)
Q Consensus       445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~-PVVlKi~  491 (525)
                      ++|+|||+||++||||+   .+++|.+||++   +|+++  || |||+|++
T Consensus         4 L~E~eaK~lL~~yGIpvp~~~~a~s~~ea~~---~a~~i--g~~~vVlK~q   49 (246)
T d1eucb2           4 LQEYQSKKLMSDNGVKVQRFFVADTANEALE---AAKRL--NAKEIVLKAQ   49 (246)
T ss_dssp             CCHHHHHHHHHTTTCCCCCEEEESSHHHHHH---HHHHH--TCSSEEEEEC
T ss_pred             HhHHHHHHHHHHcCCCCCCeeEECCHHHHHH---HHHHh--CCCeEEEEEe
Confidence            57999999999999999   89999999998   67786  75 8999986

>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]

Probab=98.23  E-value=1.1e-06  Score=81.78  Aligned_cols=86  Identities=17%  Similarity=0.241  Sum_probs=67.7

Q ss_pred             hCCCCCCCccccCCH----HHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785          19 VSTVHSTDKVCLEDA----RTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI   94 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~----eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~   94 (525)
                      ++|||||++.+++..    +.+..+++.+|| |+|+|+....++  +         ||.+..|.+++..+++++...   
T Consensus        11 ~~gi~tp~~~~~~~~~~~~~~~~~~~~~~g~-P~VvKP~~g~~s--~---------GV~~~~~~~el~~~~~~~~~~---   75 (228)
T d1ehia2          11 VNGIRNTKYIVVDPESANNWSWDKIVAELGN-IVFVKAANQGSS--V---------GISRVTNAEEYTEALSDSFQY---   75 (228)
T ss_dssp             TTTCCCCCEEEECTTGGGGCCHHHHHHHHCS-CEEEEESSCCTT--T---------TEEEECSHHHHHHHHHHHTTT---
T ss_pred             HcCCCCCCEEEEchhhcChHHHHHHHHHhCC-CEEEEEeccCCC--c---------cceeccccchhhhhhhhhccc---
Confidence            899999999988633    345677889997 999999644322  2         788889999999888887432   


Q ss_pred             cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                                ...+++|+++.+++|+.+++..+..
T Consensus        76 ----------~~~~liee~i~g~~e~~~~~~~~~~  100 (228)
T d1ehia2          76 ----------DYKVLIEEAVNGARELEVGVIGNDQ  100 (228)
T ss_dssp             ----------CSCEEEEECCCCSCEEEEEEEESSS
T ss_pred             ----------ccccccceEEeccceEEEEEeeCCC
Confidence                      2469999999988999999887754

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=8.2e-07  Score=84.34  Aligned_cols=42  Identities=21%  Similarity=0.306  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCC-cEEEEEe
Q psy7785         445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSI-PLVVRLE  491 (525)
Q Consensus       445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~-PVVlKi~  491 (525)
                      +.|+|||+||++|||||   .+|+|.+||++   +|+++  || |||||++
T Consensus         3 L~E~eaK~lL~~yGIpvp~~~~a~s~~ea~~---~a~~i--G~~pvVlKaq   48 (238)
T d2nu7b2           3 LHEYQAKQLFARYGLPAPVGYACTTPREAEE---AASKI--GAGPWVVKCQ   48 (238)
T ss_dssp             CCHHHHHHHHHHTTCCCCCEEEESSHHHHHH---HHHHH--CSSCEEEEEC
T ss_pred             hhHHHHHHHHHHcCCCCCCceEECCHHHHHH---HHHHh--CCCcEEEEEe
Confidence            46999999999999999   89999999998   67786  86 9999984

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.08  E-value=1.6e-05  Score=70.71  Aligned_cols=120  Identities=15%  Similarity=0.212  Sum_probs=85.7

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNA  380 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a  380 (525)
                      .|+|++||-||+.+...++.+..+|+...-.+-+++++..+ +.++++.+.+||++++|++..-+ ..+....++...++
T Consensus        20 ~G~valiSqSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~~-~~d~l~~l~~D~~t~~i~l~~E~-~~~~~~f~~~~r~~   97 (161)
T d2csua2          20 KGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVD-FAELMEYLADTEEDKAIALYIEG-VRNGKKFMEVAKRV   97 (161)
T ss_dssp             ECSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSSC-HHHHHHHHTTCSSCCEEEEEESC-CSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHhCCCCeeEEEecCCccccC-HHHHHHHHhcCCCCcEEEEEecC-CcCHHHHHHHHHHH
Confidence            57899999999999999999999998665556666555443 88999999999999988876543 34455555554444


Q ss_pred             HHhcCCCCcEEEEeCCcc-----------------hHHHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785         381 CKSFKLSIPLVVRLEGTN-----------------VQEGKRILDESKLPLIFASDLDEAASLVNA  428 (525)
Q Consensus       381 ~~~~~~~kPivv~~~g~~-----------------~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~  428 (525)
                      .+    .||+++...|..                 .......+++.|+...  +++++-+..+..
T Consensus        98 ~~----~Kpvv~~k~G~s~~g~~aa~sHtga~ag~~~~~~a~~~~aGvi~v--~~~~el~~~a~~  156 (161)
T d2csua2          98 TK----KKPIIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVA--NTIDEMLSMARA  156 (161)
T ss_dssp             HH----HSCEEEEECC------------------CHHHHHHHHHHTTCEEE--SSHHHHHHHHTT
T ss_pred             hc----cCCeeEEEeecccccccccccccccccccHHHHHHHHHHCCceEe--CCHHHHHHHHHH
Confidence            33    489988654421                 1112347888999877  898887765543

>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Methanocaldococcus jannaschii [TaxId: 2190]

Probab=98.06  E-value=1.8e-06  Score=81.55  Aligned_cols=86  Identities=13%  Similarity=0.147  Sum_probs=60.8

Q ss_pred             hhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          17 KPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        17 k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      .++.|||+|+..  .       .++++|| |||||+....+|  |         ||.+..|.+++.++++.+......  
T Consensus         9 l~~~Gip~P~~~--~-------~~~~i~~-PvVVKP~~g~gs--~---------Gv~~v~~~~el~~a~~~~~~~~~~--   65 (238)
T d2r7ka2           9 LREAGLRVPKKY--E-------SPEDIDG-TVIVKFPGARGG--R---------GYFIASSTEEFYKKAEDLKKRGIL--   65 (238)
T ss_dssp             HHHTTCCCCCEE--S-------SGGGCCS-CEEEECSCCCC--------------EEEESSHHHHHHHHHHHHHTTSC--
T ss_pred             HHHCCCCCcccc--c-------CHhHCCC-CEEEEECCCCCC--C---------CeEEeCCHHHHHHHHHHHHHHHhh--
Confidence            348999999743  2       3567997 999999544332  3         799999999999999988754321  


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                          .......++||++++ +.|+.+.+..++..
T Consensus        66 ----~~~~~~~v~vEe~i~-G~e~~v~~~~~~~~   94 (238)
T d2r7ka2          66 ----TDEDIANAHIEEYVV-GTNFCIHYFYSPLK   94 (238)
T ss_dssp             ----CHHHHHHCEEEECCC-SEEEEEEEEEETTT
T ss_pred             ----ccCCCCcEEEEEeec-CceEEEEEeecccc
Confidence                111235799999998 78888888877654

>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=5.5e-06  Score=74.83  Aligned_cols=90  Identities=10%  Similarity=0.058  Sum_probs=64.4

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      +.|||||++..++|.+|+.++++++|| |+|+|+....+|          .||+.+..+.++ ...+..           
T Consensus        11 ~~GIptp~~~~v~s~~d~~~~~~~ig~-P~vvKp~~~~~~----------~~~~~v~~~~~~-~~~~~~-----------   67 (198)
T d3etja3          11 KLHLPTAPWQLLAERSEWPAVFDRLGE-LAIVKRRTGGYD----------GRGQWRLRANET-EQLPAE-----------   67 (198)
T ss_dssp             HTTCCBCCEEEECCGGGHHHHHHHHCS-CEEEEESSSCBT----------TBSEEEECGGGG-GGSCGG-----------
T ss_pred             HCCcCCCCceEECCHHHHHHHHHHcCC-Ceeeeecccccc----------cceeeecchhhH-HHHHhc-----------
Confidence            799999999999999999999999997 999999433221          356666654332 111100           


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS  138 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g  138 (525)
                           ....+++|+++..+.|....+.++..  +.++...
T Consensus        68 -----~~~~~i~ee~i~~~~~~~~~~~~~~~--~~~~~~~  100 (198)
T d3etja3          68 -----CYGECIVEQGINFSGEVSLVGARGFD--GSTVFYP  100 (198)
T ss_dssp             -----GTTTEEEEECCCCSEEEEEEEEECTT--SCEEECC
T ss_pred             -----cCceEEEeeeccccccccceeeeccc--ceeeeec
Confidence                 12458999999988999998888764  3454433

>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Lysine biosynthesis enzyme LysX ATP-binding domain
domain: Lysine biosynthesis enzyme LysX ATP-binding domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.79  E-value=3.8e-06  Score=75.41  Aligned_cols=43  Identities=12%  Similarity=0.145  Sum_probs=36.7

Q ss_pred             HhhhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccc
Q psy7785          14 YLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAG   57 (525)
Q Consensus        14 ~~~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~   57 (525)
                      ++..++.|||+|++.+++|.+++.++++++|| |+|+|+..-.+
T Consensus         5 ~~~l~~~GipvP~t~~~~~~~~~~~~~~~~g~-P~ivKP~~g~~   47 (192)
T d1uc8a2           5 SVALAKAGLPQPKTALATDREEALRLMEAFGY-PVVLKPVIGSW   47 (192)
T ss_dssp             HHHHHHTTCCCCCEEEESSHHHHHHHHHHHCS-SEEEECSBCCB
T ss_pred             HHHHHHcCcCCCCEEEECCHHHHHHHHHHhCC-CEEEECCcCCc
Confidence            34455899999999999999999999999997 99999964433

>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.68  E-value=0.00016  Score=64.41  Aligned_cols=121  Identities=16%  Similarity=0.229  Sum_probs=81.9

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+|++||-||+.+...++.+...|+...-.+-++++...+ .+.+.++.+.+||++.+|.+..-+ ..+....++...+
T Consensus        23 ~G~va~iSQSG~~~~~~~~~~~~~g~g~s~~~~~G~~~~~~~~~~d~l~~~~~D~~t~vI~l~~E~-~~~~~~f~~~~~~  101 (167)
T d1oi7a2          23 RGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEI-GGSDEEEAAAWVK  101 (167)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECS-SSSHHHHHHHHHH
T ss_pred             CCcEEEEEeccHHHHHHHHHHHHcCCCceeEEEecceeecCchHHHHHHHHhhccccceeeEeeec-cchHHHHHHHHHH
Confidence            47899999999999999999999997655555555543332 367899999999999998875442 3344444443333


Q ss_pred             HHHhcCCCCcEEEEeCCcc--------------------hHHHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785         380 ACKSFKLSIPLVVRLEGTN--------------------VQEGKRILDESKLPLIFASDLDEAASLVNA  428 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~~--------------------~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~  428 (525)
                      ..    ..||+++...|..                    .......|++.||...  +++++-+..+.+
T Consensus       102 ~~----~~kpvvv~~~g~~a~~~~~~~~a~a~~~s~~g~~~~~~aaf~qaGv~~v--~~~~El~d~lk~  164 (167)
T d1oi7a2         102 DH----MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVA--DTIDEIVELVKK  164 (167)
T ss_dssp             HH----CCSCEEEEESCC------------------CCSHHHHHHHHHHHTCCBC--SSHHHHHHHHHH
T ss_pred             Hh----cCCceEEEeccccccccccccccchhhcCCCCCHHHHHHHHHHCCCEEc--CCHHHHHHHHHH
Confidence            22    4577776544311                    1122347788888877  888887766644

>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Enterococcus faecium [TaxId: 1352]

Probab=97.64  E-value=3.5e-05  Score=70.38  Aligned_cols=85  Identities=11%  Similarity=0.197  Sum_probs=63.2

Q ss_pred             hhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          17 KPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        17 k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      .+++|||||+++++++.++  ..+.+++| |+|+|+-.  +|-++         ||.+..+.+++.++++.+...     
T Consensus         9 ~~~~Gi~tP~~~~~~~~~~--~~~~~~~f-P~viKP~~--gg~s~---------Gv~~v~~~~el~~~~~~~~~~-----   69 (211)
T d1e4ea2           9 AKNAGIATPAFWVINKDDR--PVAATFTY-PVFVKPAR--SGSSF---------GVKKVNSADELDYAIESARQY-----   69 (211)
T ss_dssp             HHHTTCBCCCEEEECTTCC--CCGGGSCS-CEEEEESS--CCTTT---------TCEEECSGGGHHHHHHHHTTT-----
T ss_pred             HHHCCCCCCCeEEECchhH--HHHHhcCC-CEEEeecc--ccCcc---------hhccccccccchhhccccccc-----
Confidence            3389999999999986554  34678997 99999842  22123         788889999999888877432     


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRL  129 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~  129 (525)
                              ...+++|++++ +.|+.+.+..+..
T Consensus        70 --------~~~~~~e~~~~-~~~~~~~~~~~~~   93 (211)
T d1e4ea2          70 --------DSKILIEQAVS-GCEVGCAVLGNSA   93 (211)
T ss_dssp             --------CSSEEEEECCC-SEEEEEEEEEETT
T ss_pred             --------ccccccccccc-cccceeeccCCCc
Confidence                    24589999986 6788777776644

>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.59  E-value=6.7e-05  Score=69.74  Aligned_cols=84  Identities=15%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             hhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785          17 KPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK   96 (525)
Q Consensus        17 k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~   96 (525)
                      .+++|||+|+..  .       .++++|| |||||+....+|  +         ||.+..+.++..+.++.......   
T Consensus         9 l~~~Gip~P~~~--~-------~~~~i~~-P~IVKP~~g~gs--~---------Gv~~v~~~~e~~~~~~~~~~~~~---   64 (235)
T d2r85a2           9 LKKAGIRVPEVY--E-------DPDDIEK-PVIVKPHGAKGG--K---------GYFLAKDPEDFWRKAEKFLGIKR---   64 (235)
T ss_dssp             HHHTTCCCCCBC--S-------CGGGCCS-CEEEEECC------T---------TCEEESSHHHHHHHHHHHHCCCS---
T ss_pred             HHHcCCCCchhh--h-------CHHHcCC-CEEEEECCCCCC--C---------CeEEEechHHHHHHHHHHHhhhh---
Confidence            348999999732  2       3457897 999999755443  2         68888899999988888765321   


Q ss_pred             cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785          97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH  130 (525)
Q Consensus        97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f  130 (525)
                           ......+++|+|++ +.|+.+....++..
T Consensus        65 -----~~~~~~~iiee~i~-G~~~~~~~~~~~~~   92 (235)
T d2r85a2          65 -----KEDLKNIQIQEYVL-GVPVYPHYFYSKVR   92 (235)
T ss_dssp             -----GGGCCSEEEEECCC-CEEEEEEEEEETTT
T ss_pred             -----hCCCcchhHHhhcC-CeEEEEEEeecccc
Confidence                 12246799999997 67888888777654

>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.58  E-value=0.00024  Score=63.75  Aligned_cols=126  Identities=15%  Similarity=0.134  Sum_probs=86.4

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+|++||-||+.+...++.+...|....-.+-++.+...+ .+.+.++.+.+||+++++.+..-+ ..+....++....
T Consensus        23 ~G~iaivSQSG~l~~~l~~~~~~~g~g~~~~~~~g~~~~~~~~~~d~l~~~~~d~~t~~i~~~~E~-~~~~~~~~~~~~~  101 (176)
T d1euca2          23 KGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEI-GGNAEENAAEFLK  101 (176)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSCSSCSCCHHHHHHHHHHCTTCCEEEEEEES-SSSHHHHHHHHHH
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHhcCCceEEEEecccchhhhhHHHHHHHHHHhhccCcccceEEEe-eccchhhhHHHHH
Confidence            47999999999999999999999997554444444432222 367899999999999998875433 2334455555555


Q ss_pred             HHHhcCCCCcEEEEeCCc-------------------c-hHHHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785         380 ACKSFKLSIPLVVRLEGT-------------------N-VQEGKRILDESKLPLIFASDLDEAASLVNAC  429 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~-------------------~-~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l  429 (525)
                      +.+.....|||++...|.                   . .......|++.||.+.  +++++-...|.+.
T Consensus       102 a~~~~~~~kPvv~~k~grs~~~~~~~~~a~s~tgs~ags~~~~~aafrqaGvi~v--~s~~El~~~l~~~  169 (176)
T d1euca2         102 QHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVS--MSPAQLGTTIYKE  169 (176)
T ss_dssp             HHSSSSSCCCEEEEEECTTCCTTSCCSSTTCCCBTTBSCHHHHHHHHHHTTCEEC--SSGGGHHHHHHHH
T ss_pred             HHHhccCCCceEEEeccccccccccccccchhccCCCCCHHHHHHHHHHCCCeEc--CCHHHHHHHHHHH
Confidence            555444689999863221                   1 1222458899999877  8877776666543

>d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.0017  Score=57.39  Aligned_cols=121  Identities=13%  Similarity=0.171  Sum_probs=79.7

Q ss_pred             CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785         301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN  379 (525)
Q Consensus       301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~  379 (525)
                      .|+|++||-||+.+...++.+...|+...-.+-++++...+ .+.+.++.+.+||.+..+++..-. ..+....+. ..+
T Consensus        23 ~G~iaiiSQSG~~~~~l~~~~~~~~~g~s~~vs~Gn~~~~~~~~~~~~~~~~dd~~t~vi~~~~e~-~~~~~~~~~-~~~  100 (166)
T d2nu7a2          23 PGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEI-GGSAEEEAA-AYI  100 (166)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEES-SSSHHHHHH-HHH
T ss_pred             CCCEEEEECCchHHHHHHHHhhhhhcCcceeeccCCCcccchHHHHHHHhhccCCccEEEEEEEec-ccchhhHHH-HHH
Confidence            46899999999999999999999988655555555554433 256778888899999877764332 233333332 223


Q ss_pred             HHHhcCCCCcEEEEeCCc-------------------ch-HHHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785         380 ACKSFKLSIPLVVRLEGT-------------------NV-QEGKRILDESKLPLIFASDLDEAASLVNA  428 (525)
Q Consensus       380 a~~~~~~~kPivv~~~g~-------------------~~-~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~  428 (525)
                      ..+   ..|||++...|.                   .. ......|++.|+...  +++++-...+..
T Consensus       101 ~~~---~~KPvV~~k~Grs~~g~~aa~sht~~~a~~~g~~~~~~aa~r~aGvi~v--~~~~el~~~l~~  164 (166)
T d2nu7a2         101 KEH---VTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTV--RSLADIGEALKT  164 (166)
T ss_dssp             HHH---CCSCEEEEEECTTCCTTCCCSSTTCCCGGGCCCHHHHHHHHHTTTCEEC--SSGGGHHHHHHH
T ss_pred             HHh---cCCCeEEEeCCcCCcchhhhhccchhccCCCCCHHHHHHHHHHCCceEe--CCHHHHHHHHHH
Confidence            222   479999865431                   01 122347888898877  777776666543

>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Thermotoga maritima [TaxId: 2336]

Probab=96.01  E-value=0.0012  Score=60.42  Aligned_cols=41  Identities=24%  Similarity=0.350  Sum_probs=35.3

Q ss_pred             HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      -+|++|+++|||+   ..+.|.+|+.+   +++++  |||||+|-.+..
T Consensus         4 ~~K~~l~~~gIptp~~~~~~~~~e~~~---~~~~i--g~PvVvKP~~~~   47 (220)
T d1vkza3           4 YAKRFMKKYGIRTARFEVAETPEELRE---KIKKF--SPPYVIKADGLA   47 (220)
T ss_dssp             HHHHHHHHTTCCCCCEEEESSHHHHHH---HHTTS--CSSEEEEESSCC
T ss_pred             HHHHHHHHCCCCCCCeEEeCCHHHHHH---HHHHc--CCCEEEEecccc
Confidence            4799999999999   88999999987   56674  999999987554

>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.61  E-value=0.0033  Score=57.15  Aligned_cols=41  Identities=15%  Similarity=0.397  Sum_probs=33.9

Q ss_pred             HHHHHHHHCCCCe-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         449 EGKRILDESKLPL-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       449 eak~LL~ayGIpv-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      .+|++|+++|||+     .++.|.+||.+   +++++  |||||+|-...+
T Consensus         3 ~~k~~~~~aGvP~~p~~~~~v~s~~ea~~---~~~~i--g~P~vvKP~~~~   48 (214)
T d1ulza3           3 RSKEVMKKAGVPVVPGSDGVLKSLEEAKA---LAREI--GYPVLLKATAGG   48 (214)
T ss_dssp             HHHHHHHHTTCCBCCBCSSSCCCHHHHHH---HHHHH--CSSEEEEECSSS
T ss_pred             HHHHHHHHcCCCcCCCcCCCCCCHHHHHH---HHHHc--CCCEEEeecccc
Confidence            5899999999996     35789999998   46675  999999987544

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0035  Score=59.68  Aligned_cols=49  Identities=18%  Similarity=0.153  Sum_probs=38.7

Q ss_pred             HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhh
Q psy7785         449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL  502 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~  502 (525)
                      ..++++...|||+   ..+.|.+||.+   +++++  |||||+|-.+..-..|.+++
T Consensus         4 ~~r~~~~~~gip~~~~~~~~~~~ea~~---~~~~i--g~PvviKp~~~~gg~G~~~v   55 (275)
T d1a9xa5           4 RFDVAMKKIGLETARSGIAHTMEEALA---VAADV--GFPCIIRPSFTMGGSGGGIA   55 (275)
T ss_dssp             HHHHHHHHTTCCCCSEEEESSHHHHHH---HHHHH--CSSEEEEETTCCTTTTCEEE
T ss_pred             HHHHHHHHCCCCCCCceEeCCHHHHHH---HHHHc--CCCEEEEECCCCCCCceEEe
Confidence            4688999999999   88999999998   56675  99999998665544444433

>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.0073  Score=55.72  Aligned_cols=41  Identities=20%  Similarity=0.344  Sum_probs=32.5

Q ss_pred             HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      -+|+++..+|||+   ..++|.+||.+.   ++++  |||||+|-.+..
T Consensus         4 f~K~~~~~~~IPt~~~~~~~~~~ea~~~---~~~~--~~P~VvK~~~~~   47 (224)
T d1gsoa3           4 FTKDFLARHKIPTAEYQNFTEVEPALAY---LREK--GAPIVIKADGLA   47 (224)
T ss_dssp             HHHHHHHHTTCCBCCEEEESSSSHHHHH---HHHH--CSSEEEEC----
T ss_pred             HHHHHHHHcCCCCCCceEeCCHHHHHHH---HHHc--CCCEEEEeCCcc
Confidence            4799999999998   889999999984   5564  999999986543

>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.00  E-value=0.015  Score=52.44  Aligned_cols=82  Identities=12%  Similarity=0.089  Sum_probs=58.1

Q ss_pred             hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785          19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT   98 (525)
Q Consensus        19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~   98 (525)
                      ..++|++......+..+   .....++ |+|+|+..-.+  |+         ||.+..+.++.+.+.+.+...       
T Consensus        28 ~~~~p~~~~~~~~~~~~---~~~~~~~-PvVvKP~~g~~--g~---------Gv~~v~~~~~l~~~~~~~~~~-------   85 (206)
T d1i7na2          28 GEKFPLIEQTYYPNHRE---MLTLPTF-PVVVKIGHAHS--GM---------GKVKVENHYDFQDIASVVALT-------   85 (206)
T ss_dssp             TTTSCBCCCEEESSGGG---GSSCCCS-SEEEEESSCST--TT---------TEEEECSHHHHHHHHHHHHHH-------
T ss_pred             CCccceeecccccchhH---HhhhcCC-ceEEecCCCCC--CC---------CeEEEeecchhhhHHHHHhhc-------
Confidence            57888887666555443   4445676 99999953332  33         788888999988887776432       


Q ss_pred             CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785          99 PKTGINVNKVMVAKSVNITRETYFCIVQDR  128 (525)
Q Consensus        99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~  128 (525)
                            ...++||||++...|+.+.+.-+.
T Consensus        86 ------~~~~~vqe~I~~~~dirv~vig~~  109 (206)
T d1i7na2          86 ------QTYATAEPFIDAKYDIRVQKIGNN  109 (206)
T ss_dssp             ------TCCEEEEECCCEEEEEEEEEETTE
T ss_pred             ------cCeEEEEEeecccceEEEEEEecc
Confidence                  235899999987788888887433

>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.0073  Score=55.11  Aligned_cols=51  Identities=14%  Similarity=0.317  Sum_probs=39.2

Q ss_pred             HHHHHHHHHCCCCe------EEEcChhHHHHHHHHhhhcCCCCcEEEEEec----------CChHHHHHhhh
Q psy7785         448 QEGKRILDESKLPL------IFASDLDEAASLVNACKSFKLSIPLVVRLEG----------TNVQEGKRILD  503 (525)
Q Consensus       448 ~eak~LL~ayGIpv------~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~----------~~~~~~~~~~~  503 (525)
                      ..+|+++++.|||+      .++.|.|||.+   +++++  ||||++|-..          .+.++-++.+.
T Consensus         3 ~~~~~~~~~~GvP~vp~~~~~~~~s~dea~~---~a~~i--G~PvivKp~~~~ggrGv~~v~~~~el~~a~~   69 (216)
T d2j9ga3           3 VSAIAAMKKAGVPCVPGSDGPLGDDMDKNRA---IAKRI--GYPVIIKASGGGGGRGMRVVRGDAELAQSIS   69 (216)
T ss_dssp             HHHHHHHHHHTCCBCCBCSSCCCSCHHHHHH---HHHHH--CSSEEEEEEEEETTEEEEEECSHHHHHHHHH
T ss_pred             HHHHHHHHHcCcCCCCCCCCCCCCCHHHHHH---HHHHc--CCCEEEecccccCCceeEeecchhHHHHHHH
Confidence            36899999999996      36789999998   56675  9999999864          45556555543

>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.014  Score=51.41  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=32.8

Q ss_pred             HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEe
Q psy7785         449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLE  491 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~  491 (525)
                      --|++|+++|||+   ..+.|.+|+.+   +++++  |||+|+|=.
T Consensus         4 ~~K~~l~~~GIptp~~~~v~s~~d~~~---~~~~i--g~P~vvKp~   44 (198)
T d3etja3           4 TQKQLFDKLHLPTAPWQLLAERSEWPA---VFDRL--GELAIVKRR   44 (198)
T ss_dssp             HHHHHHHHTTCCBCCEEEECCGGGHHH---HHHHH--CSCEEEEES
T ss_pred             HHHHHHHHCCcCCCCceEECCHHHHHH---HHHHc--CCCeeeeec
Confidence            3589999999999   88999999998   46674  999999974

>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide transformylase PurT, domain 2
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.013  Score=51.90  Aligned_cols=48  Identities=21%  Similarity=0.288  Sum_probs=34.1

Q ss_pred             HHHHHH-HHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHh
Q psy7785         449 EGKRIL-DESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRI  501 (525)
Q Consensus       449 eak~LL-~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~  501 (525)
                      ..++|. ...|||+   ..+.|.+|+.+   +++++  |||||+|=....-..+-.+
T Consensus         4 ~~rrla~~~~Gip~p~~~~v~s~~dl~~---~~~~i--g~PvVvKP~~g~gs~gv~~   55 (206)
T d1kjqa3           4 GIRRLAAEELQLPTSTYRFADSESLFRE---AVADI--GYPCIVKPVMSSSGKGQTF   55 (206)
T ss_dssp             HHHHHHHTTSCCCBCCEEEESSHHHHHH---HHHHH--CSSEEEEESCC---CCCEE
T ss_pred             HHHHHHHHHCCCCCCCCeEECCHHHHHH---HHHHh--CCCEEEeeccCCccCCceE
Confidence            345555 3589999   88999999988   56675  9999999877655444433

>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=93.64  E-value=0.008  Score=56.74  Aligned_cols=49  Identities=20%  Similarity=0.287  Sum_probs=37.1

Q ss_pred             HHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEec----------CChHHHHHhhhh
Q psy7785         451 KRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEG----------TNVQEGKRILDE  504 (525)
Q Consensus       451 k~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~----------~~~~~~~~~~~~  504 (525)
                      +++|...|||+   ..++|.+||.+   .++++  ||||++|-..          .+.++-++.+.+
T Consensus         3 ~~~l~~lgi~~p~~~~v~s~~ea~~---~a~~i--GfPvivKps~~~gG~G~~iv~~~~el~~~~~~   64 (259)
T d1a9xa6           3 QHAVERLKLKQPANATVTAIEMAVE---KAKEI--GYPLVVRASYVLGGRAMEIVYDEADLRRYFQT   64 (259)
T ss_dssp             HHHHHHHTCCCCCEEECCSHHHHHH---HHHHH--CSSEEEEC-------CEEEECSHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCceEECCHHHHHH---HHHHh--CCCEEEEECCCCCCCccEeecCHHHHHHHhhh
Confidence            57899999999   88999999998   57775  9999999432          245555555544

>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Lysine biosynthesis enzyme LysX ATP-binding domain
domain: Lysine biosynthesis enzyme LysX ATP-binding domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.35  E-value=0.038  Score=48.00  Aligned_cols=46  Identities=22%  Similarity=0.231  Sum_probs=36.5

Q ss_pred             HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHH
Q psy7785         449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGK  499 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~  499 (525)
                      ..+++|+.+|||+   ..+.|.+++.+   .++++  |||+|+|=....-..|.
T Consensus         3 ~~~~~l~~~GipvP~t~~~~~~~~~~~---~~~~~--g~P~ivKP~~g~~g~gv   51 (192)
T d1uc8a2           3 ATSVALAKAGLPQPKTALATDREEALR---LMEAF--GYPVVLKPVIGSWGRLL   51 (192)
T ss_dssp             HHHHHHHHTTCCCCCEEEESSHHHHHH---HHHHH--CSSEEEECSBCCBCSHH
T ss_pred             HHHHHHHHcCcCCCCEEEECCHHHHHH---HHHHh--CCCEEEECCcCCcccce
Confidence            4688999999999   77889999887   46674  99999998765544443

>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: Prokaryotic glutathione synthetase, C-domain
species: Escherichia coli [TaxId: 562]

Probab=91.17  E-value=0.55  Score=41.06  Aligned_cols=102  Identities=11%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             CCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccCCCCCc
Q psy7785          24 STDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGI  103 (525)
Q Consensus        24 vp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~  103 (525)
                      +|++.+..|++++.++.++.|  |+|+|+..-.+|  +         ||.+..+.+.............           
T Consensus        13 ~P~Tlit~~~~~~~~f~~~~g--~vV~Kpl~gs~G--~---------gv~~~~~~~~~~~~~~~~~~~~-----------   68 (192)
T d1gsaa2          13 TPETLVTRNKAQLKAFWEKHS--DIILKPLDGMGG--A---------SIFRVKEGDPNLGVIAETLTEH-----------   68 (192)
T ss_dssp             SCCEEEESCHHHHHHHHHHHS--SEEEECSSCCTT--T---------TCEEECTTCTTHHHHHHHHTTT-----------
T ss_pred             CCCeEEECCHHHHHHHHHHcC--CeEEEEcCCCeE--E---------EEEEeecCchhhhHHHHHHHhc-----------
Confidence            799999999999999999976  899999644433  2         5555543333222222222110           


Q ss_pred             ccCeEEEEeeeCC--ceeEEEEEEEcCCCCccEEEecCCCCcccccccc
Q psy7785         104 NVNKVMVAKSVNI--TRETYFCIVQDRLHNGPVVIISPSGGTDIENVAA  150 (525)
Q Consensus       104 ~~~~vlVee~~~~--~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~  150 (525)
                      ....+++|++.+.  +.++.+-+.-+..+ +-.+--....|.+.-.+..
T Consensus        69 ~~~~~~~q~~~~~~~~~d~Rv~vv~~~~~-~a~~r~~~~~~~~~~n~~~  116 (192)
T d1gsaa2          69 GTRYCMAQNYLPAIKDGDKRVLVVDGEPV-PYCLARIPQGGETRGNLAA  116 (192)
T ss_dssp             TTSCEEEEECCGGGGGCEEEEEEETTEEC-SEEEEEECCSSCSCCCGGG
T ss_pred             CccccccccccccccCceeEEEEECCcce-EEEEEecccCCcchhhhhc
Confidence            1245788888863  57888888777666 4545433356666666553

>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Acetyl-CoA carboxylase, BC-M subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.56  E-value=0.049  Score=51.01  Aligned_cols=41  Identities=12%  Similarity=0.340  Sum_probs=31.0

Q ss_pred             HHHHHHHHCCCCeE-----------------------------EEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         449 EGKRILDESKLPLI-----------------------------FASDLDEAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       449 eak~LL~ayGIpv~-----------------------------lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      .+|+|..++|||+.                             .+.|.+||.+   +++++  |||||+|=....
T Consensus         5 ~ak~lA~~~GVP~vp~s~~~id~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~---~a~~i--gfPvvVKP~~~~   74 (267)
T d1w96a3           5 SSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQ---KAKRI--GFPVMIKASEGG   74 (267)
T ss_dssp             HHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHH---HHHHH--CSSEEEEETTCC
T ss_pred             HHHHHHHHhCcCCCCCCCCccchHHHHHHhhhhccccccccccccCCHHHHHH---HHHhc--CCCEEEEeeccc
Confidence            47788888888771                             3668999988   57775  999999965443

>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-ala-D-ala ligase, C-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=88.13  E-value=0.22  Score=43.79  Aligned_cols=43  Identities=14%  Similarity=0.298  Sum_probs=30.2

Q ss_pred             HHHHHHHHCCCCe---EEEc-------ChhHHHHHHHHhhhcCCCCcEEEEEecCChH
Q psy7785         449 EGKRILDESKLPL---IFAS-------DLDEAASLVNACKSFKLSIPLVVRLEGTNVQ  496 (525)
Q Consensus       449 eak~LL~ayGIpv---~lA~-------s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~  496 (525)
                      .+|++|+.+|||+   ..++       +.+++..   +..++  |||+|+|=....-.
T Consensus         3 ~tk~~~~~~Giptp~~~~~~~~~~~~~~~~~~~~---~~~~l--~~P~vvKP~~g~~s   55 (210)
T d1iowa2           3 RSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLA---EISAL--GLPVIVKPSREGSS   55 (210)
T ss_dssp             HHHHHHHHTTCCBCCEEEEEHHHHHHCCCTHHHH---HHHTT--CSSEEEEETTCCTT
T ss_pred             HHHHHHHHcCCCCCCeEEEechhhcccchHHHHH---HHHhc--CCCEEEeeccccCc
Confidence            4799999999999   4443       2455555   45564  99999997554433

>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Enterococcus faecium [TaxId: 1352]

Probab=83.89  E-value=0.19  Score=44.23  Aligned_cols=38  Identities=8%  Similarity=0.125  Sum_probs=28.0

Q ss_pred             HHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785         448 QEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEG  492 (525)
Q Consensus       448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~  492 (525)
                      ...+++++.+|||+   ..+.+.+++.     +.+  +|||||+|=..
T Consensus         3 ~~~~~~~~~~Gi~tP~~~~~~~~~~~~-----~~~--~~fP~viKP~~   43 (211)
T d1e4ea2           3 SLTYIVAKNAGIATPAFWVINKDDRPV-----AAT--FTYPVFVKPAR   43 (211)
T ss_dssp             HHHHHHHHHTTCBCCCEEEECTTCCCC-----GGG--SCSCEEEEESS
T ss_pred             HHHHHHHHHCCCCCCCeEEECchhHHH-----HHh--cCCCEEEeecc
Confidence            35799999999999   6666555433     345  49999999643

>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Methanocaldococcus jannaschii [TaxId: 2190]

Probab=82.46  E-value=0.22  Score=45.15  Aligned_cols=41  Identities=17%  Similarity=0.195  Sum_probs=27.7

Q ss_pred             HHHHHHHHCCCCe-EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHh
Q psy7785         449 EGKRILDESKLPL-IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRI  501 (525)
Q Consensus       449 eak~LL~ayGIpv-~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~  501 (525)
                      ..|++|+.+|||+ ....          .++++  |||||+|-....-.+|-.+
T Consensus         4 ~~k~~l~~~Gip~P~~~~----------~~~~i--~~PvVVKP~~g~gs~Gv~~   45 (238)
T d2r7ka2           4 LEGKLLREAGLRVPKKYE----------SPEDI--DGTVIVKFPGARGGRGYFI   45 (238)
T ss_dssp             HHHHHHHHTTCCCCCEES----------SGGGC--CSCEEEECSCCCC---EEE
T ss_pred             HHHHHHHHCCCCCccccc----------CHhHC--CCCEEEEECCCCCCCCeEE
Confidence            3689999999998 4332          34564  9999999876665555433

>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]

Probab=82.29  E-value=0.45  Score=42.26  Aligned_cols=43  Identities=9%  Similarity=0.025  Sum_probs=28.5

Q ss_pred             HHHHHHHHHCCCCe---EEEcChh---HHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785         448 QEGKRILDESKLPL---IFASDLD---EAASLVNACKSFKLSIPLVVRLEGTN  494 (525)
Q Consensus       448 ~eak~LL~ayGIpv---~lA~s~d---eAv~~~~aa~~~~~G~PVVlKi~~~~  494 (525)
                      ..+|++|+++|||+   .+....+   +.+.  +.++.+  |||+|+|=....
T Consensus         3 ~~~k~~l~~~gi~tp~~~~~~~~~~~~~~~~--~~~~~~--g~P~VvKP~~g~   51 (228)
T d1ehia2           3 ALTKELLTVNGIRNTKYIVVDPESANNWSWD--KIVAEL--GNIVFVKAANQG   51 (228)
T ss_dssp             HHHHHHHHTTTCCCCCEEEECTTGGGGCCHH--HHHHHH--CSCEEEEESSCC
T ss_pred             HHHHHHHHHcCCCCCCEEEEchhhcChHHHH--HHHHHh--CCCEEEEEeccC
Confidence            35899999999999   4444222   1222  134554  999999987643