Psyllid ID: psy7887

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
MSFNMSISSPFHSCSGSASLLVTTDSIPTAKKTLDIIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIFQCDEEGGCQIVKYE
ccccccccccccccHHHHHHHHHcccccccHHHHHHHHHcccccccccEEEEccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccHHHHHcHHHHHHHHcccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccHHHccccccHHHHHHHHHHHHHHccccccccccEEEEEcccccEEEEEcccccEEEEEcc
ccccEEEcccccccccccEEEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHcccccccccccEEEEccccHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHcHHHHHHcccHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccEEEEEEcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEccccccEEEEEc
msfnmsisspfhscsgsasllvttdsiptaKKTLDIIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIAdailhpeaytKEEVQEILEVSEeeldsdiltpntrsvasfkvkqpLFVQEILEVSEeeldsdiltpntrsvASFKVQEILEVSeeeldsdiltpntrsvaSFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKfytdqrtsskpdlifttkpqtgaiifqcdeeggcqivkye
msfnmsisspfhscsGSASLLVTTDSIPTAKKTLdiiakkkdvdnWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEeeldsdiltpnTRSVASFKVKQPLFVQEILEVSeeeldsdiltpntrsvaSFKVQEILEVseeeldsdiltpntrsvasfkvKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAkfytdqrtsskpdlIFTTKPQTGAIIFQCdeeggcqivkye
MSFNMSISSPFHSCSGSASLLVTTDSIPTAKKTLDIIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKeevqeilevseeeldsdiLTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIFQCDEEGGCQIVKYE
*******************LLVTTDSIPTAKKTLDIIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEV********ILT**TRSVASFKVKQPLFVQEILEVS*******ILT****SVASFKVQEILEV********ILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDIS*******LGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRT**KPDLIFTTKPQTGAIIFQCDEEGGCQIV***
*********PFHSCSGSASLLVTTDSIPTAKKTLDIIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIFQCDEEGG*****Y*
*************CSGSASLLVTTDSIPTAKKTLDIIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIFQCDEEGGCQIVKYE
***********HSCSGSASLLVTTDSIPTAKKTLDIIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIFQCDEEGGCQIVKYE
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSFNMSISSPFHSCSGSASLLVTTDSIPTAKKTLDIIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGAIIFQCDEEGGCQIVKYE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query315 2.2.26 [Sep-21-2011]
Q5XIG6458 N-acetylgalactosamine kin yes N/A 0.555 0.382 0.408 2e-30
Q01415458 N-acetylgalactosamine kin yes N/A 0.555 0.382 0.403 3e-30
Q5R6J8458 N-acetylgalactosamine kin yes N/A 0.555 0.382 0.403 4e-30
Q68FH4458 N-acetylgalactosamine kin yes N/A 0.558 0.384 0.406 1e-29
Q9SEE5496 Galactokinase OS=Arabidop yes N/A 0.415 0.264 0.459 4e-27
Q54DN6501 Galactokinase OS=Dictyost yes N/A 0.492 0.309 0.342 1e-19
P04385528 Galactokinase OS=Saccharo yes N/A 0.498 0.297 0.337 9e-17
P09608503 Galactokinase OS=Kluyvero yes N/A 0.409 0.256 0.333 3e-15
P13045520 Protein GAL3 OS=Saccharom no N/A 0.520 0.315 0.337 3e-15
O42821504 Galactokinase OS=Candida N/A N/A 0.488 0.305 0.312 4e-15
>sp|Q5XIG6|GALK2_RAT N-acetylgalactosamine kinase OS=Rattus norvegicus GN=Galk2 PE=2 SV=1 Back     alignment and function desciption
 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 110/186 (59%), Gaps = 11/186 (5%)

Query: 118 VQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQR 177
           ++E+L V+E+ L ++   P +R     ++ + L +S EEL + IL+PNT+   +FK+ QR
Sbjct: 279 LEEMLLVTEDALHAE---PYSRE----EICKCLGISLEELRTQILSPNTQGELTFKLYQR 331

Query: 178 ALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCF 237
           A HVY EA RV +F  VC +  + +  +Q LG LMNQSH S    YECS   LD LV   
Sbjct: 332 AKHVYSEAARVLQFKQVCEA--APDNAVQLLGELMNQSHRSCRDMYECSCPELDQLVDIC 389

Query: 238 REAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQ--RTSSKPDLIFTTKPQ 295
           R+ GA G+RLTGAGWGGC V+L    +  + +  V   +Y     R + +   +F TKP 
Sbjct: 390 RKFGAKGSRLTGAGWGGCTVSLVPADTLSSFLASVHEAYYQGNMSRLAREKHSLFATKPG 449

Query: 296 TGAIIF 301
            GA++F
Sbjct: 450 GGALVF 455
Acts on GalNAc. Also acts as a galactokinase when galactose is present at high concentrations.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 5EC: 7
>sp|Q01415|GALK2_HUMAN N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R6J8|GALK2_PONAB N-acetylgalactosamine kinase OS=Pongo abelii GN=GALK2 PE=2 SV=1 Back     alignment and function description
>sp|Q68FH4|GALK2_MOUSE N-acetylgalactosamine kinase OS=Mus musculus GN=Galk2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SEE5|GALK1_ARATH Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2 Back     alignment and function description
>sp|Q54DN6|GALK_DICDI Galactokinase OS=Dictyostelium discoideum GN=galK PE=3 SV=1 Back     alignment and function description
>sp|P04385|GAL1_YEAST Galactokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL1 PE=1 SV=4 Back     alignment and function description
>sp|P09608|GAL1_KLULA Galactokinase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAL1 PE=2 SV=2 Back     alignment and function description
>sp|P13045|GAL3_YEAST Protein GAL3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL3 PE=1 SV=2 Back     alignment and function description
>sp|O42821|GAL1_CANPA Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
427779643 538 Putative galactokinase 2 [Rhipicephalus 0.828 0.485 0.374 1e-35
158293799 477 AGAP005012-PA [Anopheles gambiae str. PE 0.561 0.371 0.430 9e-31
158284530376 Anopheles gambiae str. PEST AGAP012568-P 0.561 0.470 0.430 1e-30
390364550 463 PREDICTED: N-acetylgalactosamine kinase- 0.669 0.455 0.404 1e-30
291403036 458 PREDICTED: galactokinase 2 [Oryctolagus 0.555 0.382 0.424 1e-30
158284528212 Anopheles gambiae str. PEST AGAP012567-P 0.479 0.712 0.474 1e-30
313215631 467 unnamed protein product [Oikopleura dioi 0.517 0.349 0.428 1e-30
158293801 477 AGAP005013-PA [Anopheles gambiae str. PE 0.561 0.371 0.424 3e-30
213514302 459 N-acetylgalactosamine kinase [Salmo sala 0.577 0.396 0.439 3e-30
449687605231 PREDICTED: N-acetylgalactosamine kinase- 0.628 0.857 0.397 3e-30
>gi|427779643|gb|JAA55273.1| Putative galactokinase 2 [Rhipicephalus pulchellus] Back     alignment and taxonomy information
 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/275 (37%), Positives = 151/275 (54%), Gaps = 14/275 (5%)

Query: 36  IIAKKKDVDNWKDILYLGELQTKLAVSLKEMIDIADAILHPEAYTKEEVQEILEVSEEEL 95
           +IAK + ++  K  L LGE+Q+ L V L EM  +A +ILHP  YT++E+  +  +  E  
Sbjct: 267 VIAKAQGLELRKQ-LKLGEVQSLLKVPLHEMETLAKSILHPTIYTRDELCSLFGMXVECH 325

Query: 96  DSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDS---DILTPN--TRSVASFKVQEIL 150
            +  +    + +   K  +   VQ +L+V   E+ +    IL P   TR     ++  + 
Sbjct: 326 IAAQVIAKAQGLELRKQLKLGEVQSLLKVPLHEMGTLAKSILHPTMYTRD----ELCSLF 381

Query: 151 EVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVC---RSDISEEQKLQQ 207
            + + + +   L  NT+ +  FK+ QRA+HVYEEA RV +F  VC      +S  ++L +
Sbjct: 382 GMDDAQFEKCFLGKNTKHLQEFKLHQRAVHVYEEANRVWQFKDVCEGSHGTLSPSEQLSK 441

Query: 208 LGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEA 267
           LG LMN SHTS    YECSH  LD LV    +AGA G+RLTGAGWGGC ++L      +A
Sbjct: 442 LGQLMNDSHTSCRDLYECSHPDLDLLVEISLQAGALGSRLTGAGWGGCSISLVPSDKLDA 501

Query: 268 LVTQVQAKFYTDQRTS-SKPDLIFTTKPQTGAIIF 301
            + +V  KFY     S +K   +F TKP +GA IF
Sbjct: 502 FLKEVGTKFYGKFGDSVAKDTAMFVTKPGSGAAIF 536

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|158293799|ref|XP_315119.4| AGAP005012-PA [Anopheles gambiae str. PEST] gi|157016619|gb|EAA10363.4| AGAP005012-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|158284530|ref|XP_307270.4| Anopheles gambiae str. PEST AGAP012568-PA [Anopheles gambiae str. PEST] gi|157021000|gb|EAA03209.4| AGAP012568-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|390364550|ref|XP_796432.3| PREDICTED: N-acetylgalactosamine kinase-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|291403036|ref|XP_002717778.1| PREDICTED: galactokinase 2 [Oryctolagus cuniculus] Back     alignment and taxonomy information
>gi|158284528|ref|XP_307269.4| Anopheles gambiae str. PEST AGAP012567-PA [Anopheles gambiae str. PEST] gi|157020999|gb|EAA03208.4| AGAP012567-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|313215631|emb|CBY16277.1| unnamed protein product [Oikopleura dioica] Back     alignment and taxonomy information
>gi|158293801|ref|XP_315120.4| AGAP005013-PA [Anopheles gambiae str. PEST] gi|157016620|gb|EAA10347.5| AGAP005013-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|213514302|ref|NP_001133483.1| N-acetylgalactosamine kinase [Salmo salar] gi|209154184|gb|ACI33324.1| N-acetylgalactosamine kinase [Salmo salar] gi|223648620|gb|ACN11068.1| N-acetylgalactosamine kinase [Salmo salar] Back     alignment and taxonomy information
>gi|449687605|ref|XP_002169846.2| PREDICTED: N-acetylgalactosamine kinase-like, partial [Hydra magnipapillata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
UNIPROTKB|E2RDA6458 GALK2 "Uncharacterized protein 0.577 0.397 0.388 1.4e-30
UNIPROTKB|F1SQG6458 GALK2 "Uncharacterized protein 0.612 0.421 0.405 4.9e-30
UNIPROTKB|F1MFK7447 GALK2 "Uncharacterized protein 0.571 0.402 0.412 6.2e-30
RGD|1308691458 Galk2 "galactokinase 2" [Rattu 0.555 0.382 0.408 1.6e-29
MGI|MGI:1917226458 Galk2 "galactokinase 2" [Mus m 0.574 0.395 0.415 2.7e-29
UNIPROTKB|B7ZAX5434 GALK2 "cDNA, FLJ79339, highly 0.574 0.417 0.395 5.6e-29
UNIPROTKB|Q01415458 GALK2 "N-acetylgalactosamine k 0.574 0.395 0.395 5.6e-29
UNIPROTKB|E1C902398 GALK2 "Uncharacterized protein 0.571 0.452 0.402 1.9e-28
UNIPROTKB|F1P1D1461 GALK2 "Uncharacterized protein 0.571 0.390 0.402 1.9e-28
ZFIN|ZDB-GENE-041114-143457 galk2 "galactokinase 2" [Danio 0.555 0.382 0.392 1.1e-27
UNIPROTKB|E2RDA6 GALK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 75/193 (38%), Positives = 113/193 (58%)

Query:   111 KVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVA 170
             + K  + ++E+L+++E+ L  +  +P        +V   L +S +EL + IL+PNT+ V 
Sbjct:   272 QAKLGVSLEEMLQITEDTLHPEPYSPE-------EVCRCLGISLQELRTQILSPNTQDVL 324

Query:   171 SFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEAL 230
             +FK+ QRA HVY EA RV +F  +C    + +  +Q LG LMNQSH S    YECS   +
Sbjct:   325 TFKLYQRAKHVYSEAARVLQFKKICEE--APDNMVQLLGELMNQSHASCRDMYECSCPEV 382

Query:   231 DSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFY--TDQRTSSKPDL 288
             D LV   R+ GA G+RLTGAGWGGC V++       + +T V   +Y  +DQ  + +   
Sbjct:   383 DQLVDICRKFGAQGSRLTGAGWGGCTVSIVPADKLPSFLTNVHEAYYQRSDQDFTFEKQS 442

Query:   289 IFTTKPQTGAIIF 301
             +F TKP  GA++F
Sbjct:   443 LFATKPGGGALVF 455
GO:0005524 "ATP binding" evidence=IEA
GO:0006012 "galactose metabolic process" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0004335 "galactokinase activity" evidence=IEA
UNIPROTKB|F1SQG6 GALK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MFK7 GALK2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308691 Galk2 "galactokinase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1917226 Galk2 "galactokinase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B7ZAX5 GALK2 "cDNA, FLJ79339, highly similar to N-acetylgalactosamine kinase (EC 2.7.1.157)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q01415 GALK2 "N-acetylgalactosamine kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C902 GALK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1D1 GALK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-143 galk2 "galactokinase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
PLN02521497 PLN02521, PLN02521, galactokinase 6e-43
COG0153390 COG0153, GalK, Galactokinase [Carbohydrate transpo 1e-21
PRK03817351 PRK03817, PRK03817, galactokinase; Provisional 6e-19
TIGR00131386 TIGR00131, gal_kin, galactokinase 5e-16
PRK05322387 PRK05322, PRK05322, galactokinase; Provisional 3e-15
PRK00555363 PRK00555, PRK00555, galactokinase; Provisional 1e-12
PLN02865423 PLN02865, PLN02865, galactokinase 1e-11
TIGR00549274 TIGR00549, mevalon_kin, mevalonate kinase 7e-11
PRK03926302 PRK03926, PRK03926, mevalonate kinase; Provisional 2e-10
pfam0854486 pfam08544, GHMP_kinases_C, GHMP kinases C terminal 2e-10
PRK05101382 PRK05101, PRK05101, galactokinase; Provisional 3e-10
COG1577307 COG1577, ERG12, Mevalonate kinase [Lipid metabolis 1e-09
PTZ00298328 PTZ00298, PTZ00298, mevalonate kinase; Provisional 3e-09
PTZ00290468 PTZ00290, PTZ00290, galactokinase; Provisional 8e-08
COG2605333 COG2605, COG2605, Predicted kinase related to gala 0.004
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase Back     alignment and domain information 
 Score =  153 bits (389), Expect = 6e-43
 Identities = 71/166 (42%), Positives = 96/166 (57%), Gaps = 11/166 (6%)

Query: 147 QEILEVSEEELDSDIL-TPNTRSVAS----FKVKQRALHVYEEAYRVERFLSVCRSDISE 201
           +EI E+  E L S    +P + +V      FK+ QRA+HVY EA RV  F     S +SE
Sbjct: 329 EEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSE 388

Query: 202 EQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSD 261
           E+KL++LG LMN+SH S +  YECS   L+ LV   R+ GA GARLTGAGWGGC VAL  
Sbjct: 389 EEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVK 448

Query: 262 KSSCEALVTQVQAKFYTDQRTS---SKPDL---IFTTKPQTGAIIF 301
           ++     +  ++ KFY  +       + DL   +F +KP +GA I 
Sbjct: 449 EAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAIL 494

Length = 497
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase Back     alignment and domain information
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase Back     alignment and domain information
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase Back     alignment and domain information
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal Back     alignment and domain information
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 315
PLN02521497 galactokinase 100.0
KOG0631|consensus489 100.0
PLN02865423 galactokinase 100.0
COG0153390 GalK Galactokinase [Carbohydrate transport and met 100.0
PTZ00290468 galactokinase; Provisional 100.0
PRK05101382 galactokinase; Provisional 99.97
PRK05322387 galactokinase; Provisional 99.96
PRK00555363 galactokinase; Provisional 99.95
TIGR00131386 gal_kin galactokinase. The galactokinases found by 99.95
PRK03817351 galactokinase; Provisional 99.92
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.52
PTZ00298328 mevalonate kinase; Provisional 99.52
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 99.5
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.44
PRK03926302 mevalonate kinase; Provisional 99.43
PLN02677387 mevalonate kinase 99.41
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.28
KOG1511|consensus397 99.21
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.19
COG2605333 Predicted kinase related to galactokinase and meva 99.08
PLN02451370 homoserine kinase 98.66
PRK01212301 homoserine kinase; Provisional 98.64
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 98.11
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.98
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 97.93
PTZ00299336 homoserine kinase; Provisional 97.89
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 97.79
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.77
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 97.77
PRK01123282 shikimate kinase; Provisional 97.5
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.46
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.46
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 97.04
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.94
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.75
COG1907312 Predicted archaeal sugar kinases [General function 96.74
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.58
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 96.57
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 96.43
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.05
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 95.76
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 93.72
KOG1537|consensus355 91.63
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 85.42
KOG4644|consensus948 84.72
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 84.58
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 81.9
PF0346069 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin 80.47
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 80.22
>PLN02521 galactokinase Back     alignment and domain information 
Probab=100.00  E-value=1.3e-41  Score=343.41  Aligned_cols=221  Identities=34%  Similarity=0.525  Sum_probs=187.0

Q ss_pred             eeecCCchHHHHHHHHHHhhcCCCccc----cccchhhhHHhh-----hcCHHHHHHHHHHhcCCCCCCHHHHHHHhcCC
Q psy7887          21 LVTTDSIPTAKKTLDIIAKKKDVDNWK----DILYLGELQTKL-----AVSLKEMIDIADAILHPEAYTKEEVQEILEVS   91 (315)
Q Consensus        21 ~~~~~rVvEcrlAa~~La~~~gl~~~~----~~~~L~~~q~~~-----~~~l~~~~~~~~~~l~~~~yt~~ei~~~l~~~   91 (315)
                      -.||+||+||+.||.+|++++|+ +|+    ++.+|.|+++.+     +..+.+|+..+...++...||++++++.++.+
T Consensus       260 ~~Yn~R~~ec~~Aa~~L~~~~~~-~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~  338 (497)
T PLN02521        260 TNYNNRVVECRLAAIVLAVKLGM-SAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGES  338 (497)
T ss_pred             ccccHHHHHHHHHHHHHHhhcCC-cchhcccccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHHhCCc
Confidence            37999999999999999999999 676    377899998754     35778899999999999999999999999888


Q ss_pred             hhhhhcccCCCCcccccccccccchhHHHHhhhhhhhhccccCCchhhhhhhcchhhhhcCCHHHhhhhhccccccccCc
Q psy7887          92 EEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVAS  171 (315)
Q Consensus        92 ~~~l~~~i~~~nt~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~  171 (315)
                      .+++.++.++.|                                                           +.++ ..++
T Consensus       339 ~~~~~~~~~~~~-----------------------------------------------------------~~~~-~~~~  358 (497)
T PLN02521        339 LTSIFKNSPTSL-----------------------------------------------------------AVLK-AAKH  358 (497)
T ss_pred             HHHHhhcccccc-----------------------------------------------------------cccc-ccch
Confidence            877765333221                                                           1111 1456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhHHHHhhcCCCCChHHHHHHHHHHHcCCceEEEeCCC
Q psy7887         172 FKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAG  251 (315)
Q Consensus       172 ~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH~SLr~lye~S~peLD~Lv~iA~~~Ga~GaRlTGAG  251 (315)
                      |.+++||+||++||.||++|+++|++......+++.||+||++||.|||++|+||||++|.|+++|+++|++||||||||
T Consensus       359 ~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG  438 (497)
T PLN02521        359 FKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAG  438 (497)
T ss_pred             hHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCC
Confidence            78999999999999999999999953211223599999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEeccCCcHHHHHHHHHHHhhhccCC------CCCCCeEEEeeCCCceEEEe
Q psy7887         252 WGGCVVALSDKSSCEALVTQVQAKFYTDQRT------SSKPDLIFTTKPQTGAIIFQ  302 (315)
Q Consensus       252 fGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~------~~~~~~vf~t~p~~GA~i~~  302 (315)
                      ||||+|+|++++.++++++.+.+.|++++++      ...++.+|+++|++||+++.
T Consensus       439 ~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~~~~  495 (497)
T PLN02521        439 WGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAILK  495 (497)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecCCCceEee
Confidence            9999999999999999999999999997421      12357899999999999875

>KOG0631|consensus Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>KOG1511|consensus Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>KOG1537|consensus Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>KOG4644|consensus Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
2a2d_A478 X-Ray Structure Of Human N-Acetyl Galactosamine Kin 2e-31
2aj4_A548 Crystal Structure Of Saccharomyces Cerevisiae Galac 7e-18
3v2u_C520 Crystal Structure Of The Yeast Gal Regulon Complex 2e-16
3v5r_A505 Crystal Structure Of The Unliganded Form Of Gal3p L 2e-16
1s4e_A352 Pyrococcus Furiosus Galactokinase In Complex With G 2e-12
1pie_A419 Crystal Structure Of Lactococcus Lactis Galactokina 9e-12
2cz9_A350 Crystal Structure Of Galactokinase From Pyrococcus 4e-11
2hfu_A332 Crystal Structure Of L. Major Mevalonate Kinase In 4e-06
2hfs_A332 Crystal Structure Of L. Major Mevalonate Kinase Len 3e-05
2x7i_A308 Crystal Structure Of Mevalonate Kinase From Methici 6e-05
1kkh_A317 Crystal Structure Of The Methanococcus Jannaschii M 1e-04
2oi2_A292 Streptococcus Pneumoniae Mevalonate Kinase In Compl 1e-04
1vis_A324 Crystal Structure Of Mevalonate Kinase Length = 324 1e-04
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase Complexed With Mn-Amppnp And N-Acetyl Glactosamine Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 103/186 (55%), Gaps = 11/186 (5%)
Query: 118 VQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQR 177
           ++E+L V+E+ L  +   P        ++   L +S EEL + IL+PNT+ V  FK+ QR
Sbjct: 299 LEEMLLVTEDALHPEPYNPE-------EICRCLGISLEELRTQILSPNTQDVLIFKLYQR 351
Query: 178 ALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCF 237
           A HVY EA RV +F  +C    + E  +Q LG LMNQSH S    YECS   LD LV   
Sbjct: 352 AKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDIC 409
Query: 238 REAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDL--IFTTKPQ 295
           R+ GA G+RLTGAGWGGC V++       + +  V   +Y     S  P+   +F TKP 
Sbjct: 410 RKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGSLAPEKQSLFATKPG 469
Query: 296 TGAIIF 301
            GA++ 
Sbjct: 470 GGALVL 475
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Galactokinase In Complex With Galactose And Mg:amppnp Length = 548 Back     alignment and structure
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The Repressor, Gal80p, And The Transducer, Gal3p, With Galactose And Atp Length = 520 Back     alignment and structure
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p Length = 505 Back     alignment and structure
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With Galactose, Adp And Magnesium Length = 352 Back     alignment and structure
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase Complexed With Galactose Length = 419 Back     alignment and structure
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus Horikoshi Length = 350 Back     alignment and structure
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex With R-Mevalonate Length = 332 Back     alignment and structure
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase Length = 332 Back     alignment and structure
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin- Resistant Staphylococcus Aureus Mrsa252 Length = 308 Back     alignment and structure
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii Mevalonate Kinase Length = 317 Back     alignment and structure
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With Diphosphomevalonate Length = 292 Back     alignment and structure
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase Length = 324 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 1e-43
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 9e-10
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 2e-36
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 2e-32
1pie_A419 Galactokinase; galactose, galactosemia, transferas 2e-30
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 8e-30
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 1e-22
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 9e-22
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 1e-21
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 1e-21
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 2e-15
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 3e-13
3k17_A365 LIN0012 protein; protein structure initiative II(P 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 2e-08
2pff_A 1688 Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl 6e-04
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Back     alignment and structure
 Score =  154 bits (391), Expect = 1e-43
 Identities = 75/206 (36%), Positives = 109/206 (52%), Gaps = 11/206 (5%)

Query: 98  DILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEVSEEEL 157
            +       +   + K  + ++E+L V+E+ L  +   P        ++   L +S EEL
Sbjct: 279 SLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPE-------EICRCLGISLEEL 331

Query: 158 DSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHT 217
            + IL+PNT+ V  FK+ QRA HVY EA RV +F  +C    + E  +Q LG LMNQSH 
Sbjct: 332 RTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHM 389

Query: 218 SLATKYECSHEALDSLVTCFREAGAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFY 277
           S    YECS   LD LV   R+ GA G+RLTGAGWGGC V++       + +  V   +Y
Sbjct: 390 SCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYY 449

Query: 278 --TDQRTSSKPDLIFTTKPQTGAIIF 301
             +D   + +   +F TKP  GA++ 
Sbjct: 450 QRSDGSLAPEKQSLFATKPGGGALVL 475
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 100.0
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 100.0
1pie_A419 Galactokinase; galactose, galactosemia, transferas 99.91
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 99.88
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 99.88
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.78
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.74
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.73
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.54
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.52
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 99.51
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.48
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.48
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.42
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.35
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.23
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 98.91
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 98.7
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 98.68
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.12
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 98.11
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 97.71
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.69
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 97.21
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 97.06
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.94
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 95.21
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
Probab=100.00  E-value=2.8e-45  Score=370.48  Aligned_cols=219  Identities=27%  Similarity=0.435  Sum_probs=184.9

Q ss_pred             eeecCCchHHHHHHHHHHhhcCCCccccc--------cchhhhHHhh------------------hcCHHHHHHHHHHhc
Q psy7887          21 LVTTDSIPTAKKTLDIIAKKKDVDNWKDI--------LYLGELQTKL------------------AVSLKEMIDIADAIL   74 (315)
Q Consensus        21 ~~~~~rVvEcrlAa~~La~~~gl~~~~~~--------~~L~~~q~~~------------------~~~l~~~~~~~~~~l   74 (315)
                      -.||+||+||+.||++|++++|+ .|...        .+|++++..+                  ..+|++|++++.+.|
T Consensus       264 s~YN~Rr~eCe~Aa~~L~~~~g~-~~~~~~~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l  342 (520)
T 3v2u_C          264 TNYNLRVIEVTVAANALATRYSV-ALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESF  342 (520)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTB-CCCCCCSCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHhhCC-cccccccccccccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHh
Confidence            36999999999999999999998 55321        2577765431                  246888999999999


Q ss_pred             CCC--CCCHHHHHHHhcCChhhhhcccCCCCcccccccccccchhHHHHhhhhhhhhccccCCchhhhhhhcchhhhhcC
Q psy7887          75 HPE--AYTKEEVQEILEVSEEELDSDILTPNTRSVASFKVKQPLFVQEILEVSEEELDSDILTPNTRSVASFKVQEILEV  152 (315)
Q Consensus        75 ~~~--~yt~~ei~~~l~~~~~~l~~~i~~~nt~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~~Lrdv  152 (315)
                      ++.  +||++||++.||++.++|.+                                                       
T Consensus       343 ~~~~~~yt~~e~~~~l~~~~~~l~~-------------------------------------------------------  367 (520)
T 3v2u_C          343 SRKKSGFTVHEASTALNCSREEFTR-------------------------------------------------------  367 (520)
T ss_dssp             TTCTTCBCHHHHHHHTTSCHHHHHH-------------------------------------------------------
T ss_pred             hhccccccHHHHHHhhcCChhhhhh-------------------------------------------------------
Confidence            774  89999999999988888875                                                       


Q ss_pred             CHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhhhhHHHHHHHHHHhHHHHhhcCCCCChHH
Q psy7887         153 SEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSD--ISEEQKLQQLGTLMNQSHTSLATKYECSHEAL  230 (315)
Q Consensus       153 s~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~--~l~~~d~~~LG~LM~~SH~SLr~lye~S~peL  230 (315)
                             .+|+.++.++++|++++||+|||+||.||++++++|++.  ....+|++.||+||++||.|||++|+||||+|
T Consensus       368 -------~~l~~~~~~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~pel  440 (520)
T 3v2u_C          368 -------DYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIET  440 (520)
T ss_dssp             -------HHTSSSCEEESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHH
T ss_pred             -------hhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence                   334445556677899999999999999999999999421  11124799999999999999999999999999


Q ss_pred             HHHHHHHHHcCCceEEEeCCCCcceEEEec---cCCcHHHHHHHHHHHhhhccCCC----CCCCeEEEeeCCCceEEEe
Q psy7887         231 DSLVTCFREAGAYGARLTGAGWGGCVVALS---DKSSCEALVTQVQAKFYTDQRTS----SKPDLIFTTKPQTGAIIFQ  302 (315)
Q Consensus       231 D~Lv~iA~~~Ga~GaRlTGAGfGGcvvaLv---~~~~~~~~ie~l~~~Y~~~~~~~----~~~~~vf~t~p~~GA~i~~  302 (315)
                      |.|+++|++.|++||||||||||||+|+|+   +++.+++++++|.+.|+++.++.    ..++.+|+|+|+.||+|+.
T Consensus       441 d~lv~~a~~~Ga~GarlTGaG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~GA~i~~  519 (520)
T 3v2u_C          441 NQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPALGTCLYE  519 (520)
T ss_dssp             HHHHHHHHHTTCSEEEECSSCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccccCCCeEEEecCCCceEEee
Confidence            999999999999999999999999999999   89999999999999999887642    1246899999999999984
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 315
d1piea2183 d.58.26.7 (A:214-396) Galactokinase {Lactococcus l 8e-26
d1s4ea2171 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro 6e-23
d1wuua2176 d.58.26.7 (A:217-392) Galactokinase {Human (Homo s 3e-20
d1kvka2169 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt 4e-14
d1kkha2137 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon 4e-10
d1k47a2135 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PM 6e-05
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

 Score = 99.4 bits (247), Expect = 8e-26
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 142 ASFKVQEILEV-SEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDIS 200
           A  ++Q  L++ S  EL ++    NT  +    + +RA H   E  R +           
Sbjct: 30  ALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFV---- 85

Query: 201 EEQKLQQLGTLMNQSHTSLATKYECSHEALDSLV-TCFREAGAYGARLTGAGWGGCVVAL 259
               L + G L+N SH SL   YE +   LD+L  T  ++AG  GAR+TGAG+GGC +AL
Sbjct: 86  -AGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIAL 144

Query: 260 SDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQTGA 298
               +  A    V   +   +         +  +  +G+
Sbjct: 145 VAHDNVSAFRKAVGQVYE--EVVGYPAS-FYVAQIGSGS 180
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171 Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 137 Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 135 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 100.0
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 100.0
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.84
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 99.78
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.52
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 98.17
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 96.62
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 91.06
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3.6e-39  Score=285.04  Aligned_cols=152  Identities=28%  Similarity=0.428  Sum_probs=138.8

Q ss_pred             hhhhhhhcchhhhhcCCHHHhhhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhH
Q psy7887         137 NTRSVASFKVQEILEVSEEELDSDILTPNTRSVASFKVKQRALHVYEEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSH  216 (315)
Q Consensus       137 ~~~~a~~~gv~~Lrdvs~eel~~~~L~~~~~~~~~~~l~~Ra~HV~~Ea~RV~~~~~al~~~~l~~~d~~~LG~LM~~SH  216 (315)
                      .+.+++.+|++.|||++.++|....     ..+.+..+++||+||++|+.||.+++++|     +++|++.||+||++||
T Consensus        31 ~~~v~~~~~~~~L~~v~~~~l~~~~-----~~l~d~~~~rRa~Hvv~En~Rv~~a~~al-----~~~d~~~~G~lm~~Sh  100 (183)
T d1piea2          31 LKRMQTRLDIQSLGELSNEEFDANT-----DLIGDETLIKRARHAVYENNRTKIAQKAF-----VAGNLTKFGELLNASH  100 (183)
T ss_dssp             HHHHHHHCCCSSGGGCCHHHHHHTG-----GGTCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcchHhhhcHHHHHHHH-----hhcCCHHHHHHHHHHHHHHHHHHHhhhhh-----hhccHHHHHHHHHHHH
Confidence            3445667899999999999998743     34556789999999999999999999998     8899999999999999


Q ss_pred             HHHhhcCCCCChHHHHHHHHHHHc-CCceEEEeCCCCcceEEEeccCCcHHHHHHHHHHHhhhccCCCCCCCeEEEeeCC
Q psy7887         217 TSLATKYECSHEALDSLVTCFREA-GAYGARLTGAGWGGCVVALSDKSSCEALVTQVQAKFYTDQRTSSKPDLIFTTKPQ  295 (315)
Q Consensus       217 ~SLr~lye~S~peLD~Lv~iA~~~-Ga~GaRlTGAGfGGcvvaLv~~~~~~~~ie~l~~~Y~~~~~~~~~~~~vf~t~p~  295 (315)
                      .||+++|++|||++|.||+++++. |++||||||||||||+|+|+|.+.+++|+++|.+.|+++++.   .+.+|+++|+
T Consensus       101 ~sl~~~~evs~~elD~Lv~~a~~~~G~~GaRmtGgGfGGcvialv~~~~~~~~~~~i~~~y~~~~g~---~~~~~~~~~~  177 (183)
T d1piea2         101 ASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEVVGY---PASFYVAQIG  177 (183)
T ss_dssp             HHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHHSS---CCEEEECCBC
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHhCCCeEeeccccCCCceEEEEecHHHHHHHHHHHHHHHHHhhCC---CCcEEEEecC
Confidence            999999999999999999999876 999999999999999999999999999999999999999876   4689999999


Q ss_pred             CceEEE
Q psy7887         296 TGAIIF  301 (315)
Q Consensus       296 ~GA~i~  301 (315)
                      +||+++
T Consensus       178 ~Ga~~i  183 (183)
T d1piea2         178 SGSTKL  183 (183)
T ss_dssp             CCSBCC
T ss_pred             CCceeC
Confidence            999863
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure