Psyllid ID: psy7894
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1006 | 2.2.26 [Sep-21-2011] | |||||||
| Q01780 | 885 | Exosome component 10 OS=H | yes | N/A | 0.507 | 0.577 | 0.417 | 1e-116 | |
| P56960 | 887 | Exosome component 10 OS=M | yes | N/A | 0.507 | 0.576 | 0.409 | 1e-114 | |
| Q12149 | 733 | Exosome complex exonuclea | yes | N/A | 0.373 | 0.512 | 0.408 | 2e-81 | |
| Q10146 | 777 | Exosome complex exonuclea | yes | N/A | 0.368 | 0.477 | 0.412 | 1e-77 | |
| A9H9B7 | 393 | Ribonuclease D OS=Glucona | yes | N/A | 0.251 | 0.643 | 0.284 | 2e-19 | |
| A6V8R6 | 376 | Ribonuclease D OS=Pseudom | yes | N/A | 0.263 | 0.704 | 0.270 | 6e-19 | |
| Q0BVP4 | 395 | Ribonuclease D OS=Granuli | yes | N/A | 0.244 | 0.622 | 0.267 | 3e-16 | |
| C9XUE4 | 369 | Ribonuclease D OS=Cronoba | yes | N/A | 0.245 | 0.669 | 0.263 | 2e-15 | |
| C6C608 | 374 | Ribonuclease D OS=Dickeya | yes | N/A | 0.248 | 0.668 | 0.247 | 3e-15 | |
| A7HYE5 | 384 | Ribonuclease D OS=Parviba | no | N/A | 0.242 | 0.635 | 0.262 | 6e-15 |
| >sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2 | Back alignment and function desciption |
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Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/561 (41%), Positives = 331/561 (59%), Gaps = 50/561 (8%)
Query: 23 DVLVQNAYKSIVKCTKTAQSFPS-THENSLLIASPNYISGVAGTSDKVMTLVDSLLKTQ- 80
D V+ A S+V TK + P E + P + + D+++ + +++
Sbjct: 33 DSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92
Query: 81 ---NISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK--TPSVLPSQ---PKIV 132
NI LE + D+L +AND +LE + +D +G VLP+ PK V
Sbjct: 93 CRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTV 152
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWN+ A + K KS + +L+ A I RPQL+F+ K+DNS F PK+
Sbjct: 153 VSSWNRKAAE-------YGKKAKSETFRLLH--AKNIIRPQLKFREKIDNS-NTPFLPKI 202
Query: 193 KEKPNALKPLAILLEK-------------------YDAI----------ESFCHPYEYEL 223
KPNA KPL L K D I + F HPY+YEL
Sbjct: 203 FIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYEL 262
Query: 224 DLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSY 283
+ + P + L+ +P+ P+ +TP I+ +++ +L +L QE A+DLE+H+YRS+
Sbjct: 263 NHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSF 322
Query: 284 QGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLY 343
G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD IVKVFHGADSDI+WLQKDFGLY
Sbjct: 323 LGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382
Query: 344 VVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTH 403
VV MFDTHQA + L + R SL +LLK YC+VDS+K +QL DWR RPLPE + YAR DTH
Sbjct: 383 VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTH 442
Query: 404 YLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSH-ALL 462
YLLY+YD M+L++ +G+ + + SR+IC K+ KP+F +E Y+ ++R L
Sbjct: 443 YLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 502
Query: 463 NNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTV 522
N QQ A + L+ WRD+ AR +DES GYVLPNHM+L++A+ +P++ QGI ACCNPVP V
Sbjct: 503 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLV 562
Query: 523 KEHVLDIHAIILKARLQSLTK 543
++ + ++H +I +AR L K
Sbjct: 563 RQQINEMHLLIQQAREMPLLK 583
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Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. EXOSC10 has 3'-5' exonuclease activity (By similarity). EXOSC10 is required for nucleolar localization of C1D and probably mediates the association of SKIV2L2, C1D and MPP6 wth the RNA exosome involved in the maturation of 5.8S rRNA. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: - |
| >sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2 | Back alignment and function description |
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| >sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1 | Back alignment and function description |
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| >sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3 SV=2 | Back alignment and function description |
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| >sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rnd PE=3 SV=2 | Back alignment and function description |
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| >sp|C9XUE4|RND_CROTZ Ribonuclease D OS=Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032) GN=rnd PE=3 SV=2 | Back alignment and function description |
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| >sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2 | Back alignment and function description |
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| >sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rnd PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1006 | ||||||
| 350418690 | 1271 | PREDICTED: hypothetical protein LOC10074 | 0.512 | 0.405 | 0.468 | 1e-132 | |
| 340723182 | 1295 | PREDICTED: exosome component 10-like [Bo | 0.511 | 0.397 | 0.471 | 1e-132 | |
| 383849711 | 1271 | PREDICTED: exosome component 10-like [Me | 0.528 | 0.418 | 0.450 | 1e-130 | |
| 125773943 | 905 | GA20243 [Drosophila pseudoobscura pseudo | 0.668 | 0.743 | 0.379 | 1e-128 | |
| 195501501 | 900 | GE26425 [Drosophila yakuba] gi|194183923 | 0.550 | 0.615 | 0.420 | 1e-128 | |
| 195143871 | 903 | GL23665 [Drosophila persimilis] gi|19410 | 0.647 | 0.720 | 0.384 | 1e-128 | |
| 328776419 | 1271 | PREDICTED: exosome component 10-like [Ap | 0.516 | 0.409 | 0.460 | 1e-128 | |
| 195390616 | 904 | GJ23053 [Drosophila virilis] gi|19415205 | 0.533 | 0.594 | 0.423 | 1e-128 | |
| 170035413 | 796 | exosome component 10 [Culex quinquefasci | 0.501 | 0.634 | 0.452 | 1e-127 | |
| 345478840 | 1163 | PREDICTED: exosome component 10 [Nasonia | 0.529 | 0.458 | 0.446 | 1e-127 |
| >gi|350418690|ref|XP_003491936.1| PREDICTED: hypothetical protein LOC100746784 [Bombus impatiens] | Back alignment and taxonomy information |
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Score = 480 bits (1236), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/534 (46%), Positives = 346/534 (64%), Gaps = 18/534 (3%)
Query: 20 KTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGVAGTSDKVMTLVDSLLKT 79
+ F VQ A+ +I K A S P+ + P+++ + +M ++ LL
Sbjct: 29 ENFHDYVQEAFDAIKLGIKCANSLPTGSNFNYYSCFPSFLKAKEENTKLIMDVMQHLLGL 88
Query: 80 QNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAG----TKTPSVLPS---QPKIV 132
I ++S L +E + D+L E ND LL+ N +D G T+ ++ S QP +
Sbjct: 89 AGIKGNISNLDIEEKFDLLLETNDMLLDRANALMDKECGIAKNTEVELLVSSAKDQPDGI 148
Query: 133 KESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQLQFKVKVDNSYEQLFEPKL 192
SWNK S + + + +A I+RPQL FK K+DNS + + P++
Sbjct: 149 NGSWNKKVYRSQDTENIQSVRLLAAK---------NIQRPQLTFKDKIDNS-SKPWCPRI 198
Query: 193 KEKPNALKPLAILLEKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMI 252
K+KPN+LKPLAI LE+ + E F HPYEYELD++VP D LK PK+ PL +T L+MI
Sbjct: 199 KDKPNSLKPLAIYLEEGENGEIFSHPYEYELDMFVPPNDQLKKSVPKKYKPLEETLLVMI 258
Query: 253 TEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEV 312
+P + L+ +LK+ +EIA+DLE+H+YRS+QG TCLMQIST D DY++DTL LR +L
Sbjct: 259 KDPSDIKLLIEDLKRYKEIAVDLEHHSYRSFQGITCLMQISTGDTDYLIDTLSLRSELHE 318
Query: 313 LNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYC 372
LNE+ T I+KVFHGAD DI+WLQ+D LYVV MFDTHQA K L MP SLAYLLKHYC
Sbjct: 319 LNEIFTKSTILKVFHGADLDIQWLQRDLSLYVVNMFDTHQAAKQLNMPYLSLAYLLKHYC 378
Query: 373 DVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFT 432
+VD DK FQ+ DWR RPLPE ++YAR DTHYLLY+ D ++ L A+G+ N++ + +
Sbjct: 379 NVDPDKHFQMADWRIRPLPEKLMKYAREDTHYLLYIKDLLRNALIDVANGQINILKAVYD 438
Query: 433 NSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQKYALRELYKWRDRIARDKDESTGYV 491
S ICK Y KPV+ EE M ++R S + NN+Q YAL+EL+KWRD+ AR +D+S YV
Sbjct: 439 RSTEICKKTYIKPVWTEESCMIMYRKSQKMFNNKQLYALKELHKWRDQTARGEDDSIAYV 498
Query: 492 LPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPV 545
LPNHMLL +A+++PR++QGI ACC+ +P V++++L +H IILKAR Q L KP+
Sbjct: 499 LPNHMLLNIAETLPREMQGILACCDSIPPLVRQNLLKLHKIILKAREQPLIKPI 552
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Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340723182|ref|XP_003399974.1| PREDICTED: exosome component 10-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|383849711|ref|XP_003700481.1| PREDICTED: exosome component 10-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|125773943|ref|XP_001358230.1| GA20243 [Drosophila pseudoobscura pseudoobscura] gi|54637966|gb|EAL27368.1| GA20243 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
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| >gi|195501501|ref|XP_002097822.1| GE26425 [Drosophila yakuba] gi|194183923|gb|EDW97534.1| GE26425 [Drosophila yakuba] | Back alignment and taxonomy information |
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| >gi|195143871|ref|XP_002012920.1| GL23665 [Drosophila persimilis] gi|194101863|gb|EDW23906.1| GL23665 [Drosophila persimilis] | Back alignment and taxonomy information |
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| >gi|328776419|ref|XP_003249163.1| PREDICTED: exosome component 10-like [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|195390616|ref|XP_002053964.1| GJ23053 [Drosophila virilis] gi|194152050|gb|EDW67484.1| GJ23053 [Drosophila virilis] | Back alignment and taxonomy information |
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| >gi|170035413|ref|XP_001845564.1| exosome component 10 [Culex quinquefasciatus] gi|167877380|gb|EDS40763.1| exosome component 10 [Culex quinquefasciatus] | Back alignment and taxonomy information |
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| >gi|345478840|ref|XP_001599044.2| PREDICTED: exosome component 10 [Nasonia vitripennis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1006 | ||||||
| FB|FBgn0038269 | 900 | Rrp6 "Rrp6" [Drosophila melano | 0.560 | 0.626 | 0.411 | 9.5e-120 | |
| UNIPROTKB|Q01780 | 885 | EXOSC10 "Exosome component 10" | 0.329 | 0.374 | 0.515 | 1.2e-114 | |
| UNIPROTKB|F1PI20 | 908 | EXOSC10 "Uncharacterized prote | 0.354 | 0.393 | 0.493 | 4e-114 | |
| UNIPROTKB|E1C525 | 910 | EXOSC10 "Uncharacterized prote | 0.354 | 0.392 | 0.493 | 8.2e-114 | |
| UNIPROTKB|D4A1X2 | 884 | LOC100366273 "Protein LOC10036 | 0.377 | 0.429 | 0.463 | 4e-112 | |
| UNIPROTKB|E1BMZ5 | 890 | EXOSC10 "Uncharacterized prote | 0.350 | 0.396 | 0.494 | 8.2e-112 | |
| UNIPROTKB|B4DKG8 | 679 | EXOSC10 "Exosome component 10" | 0.329 | 0.487 | 0.515 | 9e-111 | |
| UNIPROTKB|F1RHR9 | 886 | EXOSC10 "Uncharacterized prote | 0.329 | 0.373 | 0.518 | 1.5e-110 | |
| RGD|2323986 | 859 | LOC100366273 "rCG30986-like" [ | 0.377 | 0.442 | 0.463 | 3.1e-110 | |
| UNIPROTKB|A7E323 | 702 | EXOSC10 "Uncharacterized prote | 0.350 | 0.502 | 0.498 | 1.7e-109 |
| FB|FBgn0038269 Rrp6 "Rrp6" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1161 (413.8 bits), Expect = 9.5e-120, Sum P(2) = 9.5e-120
Identities = 241/586 (41%), Positives = 359/586 (61%)
Query: 3 DTNQEIPKSDEA-NKELSKTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISG 61
+ +E ++D+ K S+ + +K+ + TK A +FP +L ++ P Y
Sbjct: 11 EAKEESAQADQPPKKSASEDVEAFTNKGFKNAIAATKAANAFPQGTARALYLSYPGYARV 70
Query: 62 VAGTSDKVMTLVDSLLKTQNISKSMSKLYLEGQKDILTEANDKLLESINTRIDVMAGTK- 120
+ + +V+ L+ ++L +++I + K E Q +++ E ND L E I T +D+ G +
Sbjct: 71 MEDLTQRVVALIGNVLHSKDIKGDIKKRQPEEQFEMVQECNDVLFERITTNLDIKGGLRR 130
Query: 121 -TPSVLPSQPKIVKESWN-KNAKAS---------NVWQEVHDNKKKSANWFMLNKGAVEI 169
T V+ +Q ++ S + + A AS W ++S L A I
Sbjct: 131 NTQQVVEAQVDVMSSSTSIEPAVASPQTQGTPKAGSWNRTTGTPQRSMVSARLFT-AKNI 189
Query: 170 ERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA--IESFCHPYEYELDLYV 227
RPQ QF+ VDNS + F P+LKEKPN+LKPLA+L E DA ++S+ HPYE+EL +
Sbjct: 190 VRPQTQFREPVDNSAQNPFVPRLKEKPNSLKPLALLPEYDDAGNVQSYLHPYEFELLKFQ 249
Query: 228 PKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYT 287
P E+ + ++P +++T LM++ E++ Q + EL+Q +IAID+E+H+YR++ G T
Sbjct: 250 PPEEQFQKQKPVLPALMAETELMVVDTVEKLKQALEELRQAPQIAIDVEHHSYRTFMGIT 309
Query: 288 CLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGM 347
CL+Q+STR KDYI DTL LR+D+ +LN VLTD +K+ HGAD DI+WLQ+D LY+V M
Sbjct: 310 CLVQMSTRSKDYIFDTLILRDDMHILNLVLTDPKKLKILHGADLDIEWLQRDLSLYIVNM 369
Query: 348 FDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLY 407
FDTH+A K L M R SLAYLLKHY D+D DK+ QL DWR RPLP+ + YAR DTH+L+Y
Sbjct: 370 FDTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLVDYARQDTHFLIY 429
Query: 408 VYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFR-SHALLNNQQ 466
VY M DL H + L+ S + S ++CK +Y KP E ++++ R + +N+Q
Sbjct: 430 VYGRMTNDL-LQQHAEPGLLGSVYQQSTDVCKKRYNKPHIGPESHLDLVRKTKRSFDNRQ 488
Query: 467 KYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHV 526
YALR +++WRD AR +DES GYVLPNHM+LQ+A+S+PR++QGI ACCNP+P V++ +
Sbjct: 489 LYALRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLPREMQGILACCNPIPPLVRQQL 548
Query: 527 LDIHAIILKARLQSLTKPV----EKLQPSLDGMKKKQQQQVSPPHD 568
+H I+LKAR Q L KP+ Q +L K ++ PHD
Sbjct: 549 HTLHQIVLKARDQPLVKPILEAHSSTQAALPPSTKDFSSKLYCPHD 594
|
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| UNIPROTKB|Q01780 EXOSC10 "Exosome component 10" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PI20 EXOSC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C525 EXOSC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D4A1X2 LOC100366273 "Protein LOC100366273" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BMZ5 EXOSC10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B4DKG8 EXOSC10 "Exosome component 10" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RHR9 EXOSC10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| RGD|2323986 LOC100366273 "rCG30986-like" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A7E323 EXOSC10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.13 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1006 | |||
| cd06147 | 192 | cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease d | 1e-107 | |
| COG0349 | 361 | COG0349, Rnd, Ribonuclease D [Translation, ribosom | 3e-55 | |
| cd06142 | 178 | cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domai | 7e-53 | |
| pfam01612 | 172 | pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease | 9e-51 | |
| cd06129 | 161 | cd06129, RNaseD_like, DEDDy 3'-5' exonuclease doma | 2e-44 | |
| smart00474 | 172 | smart00474, 35EXOc, 3'-5' exonuclease | 4e-38 | |
| TIGR01388 | 367 | TIGR01388, rnd, ribonuclease D | 2e-30 | |
| PRK10829 | 373 | PRK10829, PRK10829, ribonuclease D; Provisional | 2e-17 | |
| cd06148 | 197 | cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease dom | 1e-15 | |
| cd06146 | 193 | cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease d | 7e-15 | |
| cd06141 | 170 | cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain o | 8e-15 | |
| pfam00570 | 68 | pfam00570, HRDC, HRDC domain | 1e-14 | |
| pfam00570 | 68 | pfam00570, HRDC, HRDC domain | 1e-14 | |
| smart00341 | 81 | smart00341, HRDC, Helicase and RNase D C-terminal | 1e-14 | |
| smart00341 | 81 | smart00341, HRDC, Helicase and RNase D C-terminal | 3e-14 | |
| cd09018 | 150 | cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' e | 7e-10 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-07 | |
| COG0349 | 361 | COG0349, Rnd, Ribonuclease D [Translation, ribosom | 7e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 4e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-05 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 6e-05 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 9e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-04 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 1e-04 | |
| PRK05306 | 746 | PRK05306, infB, translation initiation factor IF-2 | 1e-04 | |
| PRK05755 | 880 | PRK05755, PRK05755, DNA polymerase I; Provisional | 1e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 2e-04 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 5e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-04 | |
| TIGR01388 | 367 | TIGR01388, rnd, ribonuclease D | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.003 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 0.003 | |
| pfam07964 | 706 | pfam07964, Red1, Rec10 / Red1 | 0.003 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.004 |
| >gnl|CDD|99850 cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins | Back alignment and domain information |
|---|
Score = 331 bits (852), Expect = e-107
Identities = 118/192 (61%), Positives = 149/192 (77%), Gaps = 1/192 (0%)
Query: 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTL 304
+TPL + E++ +LV +LK +EIA+DLE+H+YRSY G+TCLMQISTR++DYIVDTL
Sbjct: 1 DETPLTFVDTEEKLEELVEKLKNCKEIAVDLEHHSYRSYLGFTCLMQISTREEDYIVDTL 60
Query: 305 KLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSL 364
KLR+D+ +LNEV TD NI+KVFHGADSDI WLQ+DFGLYVV +FDT QA + L +PR SL
Sbjct: 61 KLRDDMHILNEVFTDPNILKVFHGADSDIIWLQRDFGLYVVNLFDTGQAARVLNLPRHSL 120
Query: 365 AYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDL-SAAAHGK 423
AYLL+ YC+VD+DK +QL DWR RPLPE I+YAR DTHYLLY+YD ++ +L A
Sbjct: 121 AYLLQKYCNVDADKKYQLADWRIRPLPEEMIKYAREDTHYLLYIYDRLRNELLERANALA 180
Query: 424 QNLVLSTFTNSR 435
NL+ S SR
Sbjct: 181 PNLLESVLNCSR 192
|
Yeast Rrp6p and its human homolog, the polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100), are exosome-associated proteins involved in the degradation and processing of precursors to stable RNAs. Both proteins contain a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PM/Scl-100, an autoantigen present in the nucleolar compartment of the cell, reacts with autoantibodies produced by about 50% of patients with polymyositis-scleroderma overlap syndrome. Length = 192 |
| >gnl|CDD|223426 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|176654 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|216604 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease | Back alignment and domain information |
|---|
| >gnl|CDD|176650 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214681 smart00474, 35EXOc, 3'-5' exonuclease | Back alignment and domain information |
|---|
| >gnl|CDD|130455 TIGR01388, rnd, ribonuclease D | Back alignment and domain information |
|---|
| >gnl|CDD|236771 PRK10829, PRK10829, ribonuclease D; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99851 cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176655 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|201312 pfam00570, HRDC, HRDC domain | Back alignment and domain information |
|---|
| >gnl|CDD|201312 pfam00570, HRDC, HRDC domain | Back alignment and domain information |
|---|
| >gnl|CDD|128635 smart00341, HRDC, Helicase and RNase D C-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|128635 smart00341, HRDC, Helicase and RNase D C-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|176656 cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223426 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235591 PRK05755, PRK05755, DNA polymerase I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|130455 TIGR01388, rnd, ribonuclease D | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1006 | |||
| KOG2206|consensus | 687 | 100.0 | ||
| PRK10829 | 373 | ribonuclease D; Provisional | 100.0 | |
| TIGR01388 | 367 | rnd ribonuclease D. This model describes ribonucle | 100.0 | |
| COG0349 | 361 | Rnd Ribonuclease D [Translation, ribosomal structu | 100.0 | |
| cd06129 | 161 | RNaseD_like DEDDy 3'-5' exonuclease domain of RNas | 99.96 | |
| cd06146 | 193 | mut-7_like_exo DEDDy 3'-5' exonuclease domain of C | 99.96 | |
| cd06141 | 170 | WRN_exo DEDDy 3'-5' exonuclease domain of WRN and | 99.94 | |
| cd06148 | 197 | Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro | 99.94 | |
| PF01612 | 176 | DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 | 99.94 | |
| cd06147 | 192 | Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y | 99.84 | |
| cd06142 | 178 | RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon | 99.83 | |
| smart00474 | 172 | 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo | 99.8 | |
| PRK05755 | 880 | DNA polymerase I; Provisional | 99.71 | |
| PF08066 | 91 | PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR01258 | 99.69 | |
| cd00007 | 155 | 35EXOc 3'-5' exonuclease. The 35EXOc domain is res | 99.66 | |
| cd09018 | 150 | DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease | 99.65 | |
| cd06140 | 178 | DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' | 99.62 | |
| PRK14975 | 553 | bifunctional 3'-5' exonuclease/DNA polymerase; Pro | 99.6 | |
| cd06139 | 193 | DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease | 99.5 | |
| PF00570 | 68 | HRDC: HRDC domain Bloom syndrome. Werner syndrome. | 99.36 | |
| smart00341 | 81 | HRDC Helicase and RNase D C-terminal. Hypothetical | 99.34 | |
| COG0749 | 593 | PolA DNA polymerase I - 3'-5' exonuclease and poly | 99.25 | |
| KOG2207|consensus | 617 | 99.23 | ||
| PF00570 | 68 | HRDC: HRDC domain Bloom syndrome. Werner syndrome. | 99.2 | |
| KOG2206|consensus | 687 | 99.18 | ||
| TIGR00593 | 887 | pola DNA polymerase I. This family is based on the | 99.17 | |
| smart00341 | 81 | HRDC Helicase and RNase D C-terminal. Hypothetical | 99.14 | |
| TIGR01388 | 367 | rnd ribonuclease D. This model describes ribonucle | 98.93 | |
| PRK10829 | 373 | ribonuclease D; Provisional | 98.93 | |
| cd06128 | 151 | DNA_polA_exo DEDDy 3'-5' exonuclease domain of fam | 98.87 | |
| COG0349 | 361 | Rnd Ribonuclease D [Translation, ribosomal structu | 98.44 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 98.31 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 97.93 | |
| KOG4373|consensus | 319 | 97.79 | ||
| cd06125 | 96 | DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas | 97.75 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 97.51 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 97.16 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 97.02 | |
| PRK06310 | 250 | DNA polymerase III subunit epsilon; Validated | 97.0 | |
| cd06144 | 152 | REX4_like DEDDh 3'-5' exonuclease domain of RNA ex | 96.95 | |
| PRK07740 | 244 | hypothetical protein; Provisional | 96.9 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 96.89 | |
| PRK06807 | 313 | DNA polymerase III subunit epsilon; Validated | 96.84 | |
| cd06137 | 161 | DEDDh_RNase DEDDh 3'-5' exonuclease domain of the | 96.78 | |
| PRK07942 | 232 | DNA polymerase III subunit epsilon; Provisional | 96.74 | |
| PRK08517 | 257 | DNA polymerase III subunit epsilon; Provisional | 96.71 | |
| cd06149 | 157 | ISG20 DEDDh 3'-5' exonuclease domain of Interferon | 96.66 | |
| cd06131 | 167 | DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl | 96.58 | |
| cd06145 | 150 | REX1_like DEDDh 3'-5' exonuclease domain of RNA ex | 96.5 | |
| PRK05711 | 240 | DNA polymerase III subunit epsilon; Provisional | 96.42 | |
| TIGR01298 | 200 | RNaseT ribonuclease T. in gamma-subdivision Proteo | 96.42 | |
| TIGR00573 | 217 | dnaq exonuclease, DNA polymerase III, epsilon subu | 96.41 | |
| TIGR01405 | 1213 | polC_Gram_pos DNA polymerase III, alpha chain, Gra | 96.37 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 96.37 | |
| PRK07883 | 557 | hypothetical protein; Validated | 96.35 | |
| TIGR01406 | 225 | dnaQ_proteo DNA polymerase III, epsilon subunit, P | 96.34 | |
| PRK09145 | 202 | DNA polymerase III subunit epsilon; Validated | 96.32 | |
| PRK05168 | 211 | ribonuclease T; Provisional | 96.1 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 96.07 | |
| smart00479 | 169 | EXOIII exonuclease domain in DNA-polymerase alpha | 95.89 | |
| PRK05601 | 377 | DNA polymerase III subunit epsilon; Validated | 95.83 | |
| PRK06309 | 232 | DNA polymerase III subunit epsilon; Validated | 95.82 | |
| PRK09146 | 239 | DNA polymerase III subunit epsilon; Validated | 95.82 | |
| cd05160 | 199 | DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain | 95.81 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 95.8 | |
| cd06127 | 159 | DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh | 95.78 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 95.55 | |
| KOG2405|consensus | 458 | 95.44 | ||
| COG2176 | 1444 | PolC DNA polymerase III, alpha subunit (gram-posit | 95.44 | |
| cd06134 | 189 | RNaseT DEDDh 3'-5' exonuclease domain of RNase T. | 95.39 | |
| PF13482 | 164 | RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A | 95.24 | |
| cd06136 | 177 | TREX1_2 DEDDh 3'-5' exonuclease domain of three pr | 95.22 | |
| cd06130 | 156 | DNA_pol_III_epsilon_like an uncharacterized bacter | 95.06 | |
| cd05780 | 195 | DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom | 94.86 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 94.83 | |
| KOG2249|consensus | 280 | 94.27 | ||
| PRK00448 | 1437 | polC DNA polymerase III PolC; Validated | 93.76 | |
| cd06143 | 174 | PAN2_exo DEDDh 3'-5' exonuclease domain of the euk | 93.72 | |
| KOG2405|consensus | 458 | 93.57 | ||
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 93.44 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 93.33 | |
| PRK09182 | 294 | DNA polymerase III subunit epsilon; Validated | 92.17 | |
| PRK07247 | 195 | DNA polymerase III subunit epsilon; Validated | 92.16 | |
| cd05785 | 207 | DNA_polB_like2_exo Uncharacterized bacterial subgr | 91.38 | |
| PRK07983 | 219 | exodeoxyribonuclease X; Provisional | 90.51 | |
| PRK11779 | 476 | sbcB exonuclease I; Provisional | 87.72 | |
| PF11408 | 80 | Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR02 | 87.32 | |
| COG0847 | 243 | DnaQ DNA polymerase III, epsilon subunit and relat | 85.29 | |
| PF09281 | 138 | Taq-exonuc: Taq polymerase, exonuclease; InterPro: | 83.56 | |
| cd06133 | 176 | ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o | 82.92 | |
| cd05784 | 193 | DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of | 82.89 | |
| cd05781 | 188 | DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of | 81.51 |
| >KOG2206|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-86 Score=748.28 Aligned_cols=645 Identities=33% Similarity=0.504 Sum_probs=519.8
Q ss_pred ccHHHHHHHHHHHHHHHHhhhcCCCCCcccccccccCCCCCCc---cchHHHHHHHHHHHHHhcccCCCCC--ccccccc
Q psy7894 20 KTFDVLVQNAYKSIVKCTKTAQSFPSTHENSLLIASPNYISGV---AGTSDKVMTLVDSLLKTQNISKSMS--KLYLEGQ 94 (1006)
Q Consensus 20 ~~~~~~~~~~~~~~v~~~r~s~~lp~~~~d~~f~~s~~~~~~f---~~~~~rll~~~~~ll~~~~~~~~~~--~~d~~~~ 94 (1006)
...+.|++.+..+++.+|+. ||+||++ ||+| +..++|++.+|+.+..++|+.++.- .+|+++.
T Consensus 4 ~~~ds~~k~~~~s~~~~t~~---------D~~fY~s---f~~F~~~~~~~~rl~~~mn~v~~s~~~~~~~~d~~~~~~~~ 71 (687)
T KOG2206|consen 4 ENPDSLVKRVINSVRAATSL---------DYDFYYS---FPGFSKLKSKADRLADMMNEVILSIGCHSESFDRPEDIEDL 71 (687)
T ss_pred ccHHHHHHHHhhccccceec---------cceeecc---CchhhhcchhHHHHHHHHHHHHHhhhccccccCCchhHHHH
Confidence 34556666665555543332 9999999 9999 8999999999999999999988762 2899999
Q ss_pred chhhhhhhHHHHhhhchhhhhhcCCCCCCCCCCCCcccccccccccccccchhhhcccccccccccccccCCCCCCCccc
Q psy7894 95 KDILTEANDKLLESINTRIDVMAGTKTPSVLPSQPKIVKESWNKNAKASNVWQEVHDNKKKSANWFMLNKGAVEIERPQL 174 (1006)
Q Consensus 95 ~~~v~~~~D~llE~~d~~lDe~~g~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~kPQ~ 174 (1006)
|+++++++|.|+|++|++|||+++.++..... ..++|++... + +..+ +..+|.|||+
T Consensus 72 ~d~l~~~~D~i~Er~d~~lDe~k~~~k~e~~~-----~~s~~~r~fs---------G-Ka~s--------p~~~l~kpq~ 128 (687)
T KOG2206|consen 72 WDNLGNANDNILERFDHLLDELKRARKSESRG-----SPSEYDREFS---------G-KAKS--------PTMNLLKPQV 128 (687)
T ss_pred HHHHHhhhhHHHHHhcchHHHHHhhhhccccC-----Chhhhhhhcc---------c-cccC--------ccccccchHH
Confidence 99999999999999999999999998863211 1144553321 1 1111 1578999999
Q ss_pred ccCccCCCCCCCCCcccCCCCCCCCChhhhhhhccc-cccccCCCcHhhhccCCCCccccccCCCCcCCCCCCCCcEEeC
Q psy7894 175 QFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD-AIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMIT 253 (1006)
Q Consensus 175 ~F~~~vDNs~~~pf~p~l~~Kpna~~pl~~~~~~~~-~~~~~~HPYe~Ei~~~~~p~~~~~~~~p~~~~p~~~t~~~lId 253 (1006)
+|...|||++ +||-|++.+ ...... ....+.|||++|+.+|.+++.+++..+|..+.+++.+++.||+
T Consensus 129 ~f~~~idn~~-~pf~~~~~~----------~vEr~e~~~~~~~hpye~e~~~f~~~~~~le~~~~~~~~~le~T~~~~I~ 197 (687)
T KOG2206|consen 129 RFVEGIDNLH-HPFCSMLAS----------EVERLEDRPREVQHPYEDEERHFRQIDKQLEEGEPRKSSPLEITPKVWIC 197 (687)
T ss_pred HHhhcccccc-CCchhhhhh----------hhhchhhcchhccCcchhhhhhhcccchhhhcccccCCCcccccCceeee
Confidence 9999999996 999999864 111122 3456999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEeCcchhhhHHHHHHHHcCCCceeeecchhhHH
Q psy7894 254 EPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDI 333 (1006)
Q Consensus 254 T~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt~~~~yIID~laL~~~L~~L~elLedp~IvKV~Hgak~Dl 333 (1006)
+..+|.++.+.|....++|+|+|+|++|+|.|.+|||||+|++++||||++.+++.++.|+++|+||+|+||+||+..|+
T Consensus 198 t~~el~~l~~~l~~~~Efavdlehhsyrsf~gltclmqISTr~ed~iIDt~~l~~~i~~l~e~fsdp~ivkvfhgaD~di 277 (687)
T KOG2206|consen 198 TLGELEALPEILDSVIEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTFKLRDHIGILNEVFSDPGIVKVFHGADTDI 277 (687)
T ss_pred chHHHHHHHHHHhhhhhhhhhccccchhhhcCceeEEEeeccchhheehhHHHHHHHHHhhhhccCCCeEEEEecCccch
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHhCCccCeeechHhHHHhCCCCCccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhHHHHHHHHHH
Q psy7894 334 KWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMK 413 (1006)
Q Consensus 334 ~~L~rd~GI~~~nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~ 413 (1006)
.|||++|||+++|+|||..|+++||.+++||++|++.|||+..+|.+|++||++|||+.+|+.||+.|+|||++||+.|+
T Consensus 278 iwlqrdfgiyvvnLfdt~~a~r~L~~~r~sL~~ll~~~~~v~~nk~yqladwR~rpLp~~Mv~yar~dthyllyiyD~lr 357 (687)
T KOG2206|consen 278 IWLQRDFGIYVVNLFDTIQASRLLGLPRPSLAYLLECVCGVLTNKKYQLADWRIRPLPEEMVRYAREDTHYLLYIYDVLR 357 (687)
T ss_pred hhhhccceEEEEechhhHHHHHHhCCCcccHHHHHHHHHhhhhhhhhhhchhccccCcHHHHHHHhhcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHhhHHHHhhhcCCCCCChhhhHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccC
Q psy7894 414 LDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRSHALLNNQQKYALRELYKWRDRIARDKDESTGYVLP 493 (1006)
Q Consensus 414 ~eL~e~g~~~~~~l~~v~~es~~l~l~~ye~~~~~~~~~~~l~~k~~~L~~~qlavlr~L~~WRD~~AR~~Dep~~~VL~ 493 (1006)
.+|.+.++++. -++.++..+|...|.++.+...+|+.++.....+++.|+.+|++|++|||.+||.+|||++||||
T Consensus 358 ~el~~~a~~~~----~~~~~~~d~c~~~~~k~~~~~~sy~~v~~~q~~ln~~q~~~l~~L~~wRd~iARaeDES~~yVlp 433 (687)
T KOG2206|consen 358 KELKRLAKGRA----VTYSESRDMCTNGYKKKTFCTKSYLEVEDIQSRLNSSQLDVLRALLRWRDFIARAEDESVHYVLP 433 (687)
T ss_pred HHHHHHhcccc----cccchhhhhhhcceecccCCCcchHhHHHHHhccchhHHHHHHHHHHHHHHHHhhccCCCceecc
Confidence 99998887654 34558889999999999999999999988777899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHhhcCCCCCccccCCccchhhhhhcccCCCCCCCChhH
Q psy7894 494 NHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKPVEKLQPSLDGMKKKQQQQVSPPHDSNNQQ 573 (1006)
Q Consensus 494 d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar~~p~~~~i~~~~ps~~gir~~q~q~~~pP~ll~~~Q 573 (1006)
|++|+.||+.+|.+..+|++||++.+++|++|..+++.+|..|+.....
T Consensus 434 N~~ll~l~e~~P~~v~gl~~~ln~~~p~vkq~~~~~~~ii~~a~~~~l~------------------------------- 482 (687)
T KOG2206|consen 434 NDQLLKLAEERPDTVDGLLGGLNRLSPLVKQNVMDFLYIIRSAGRGFLL------------------------------- 482 (687)
T ss_pred cHHHHHHHHHCCccHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh-------------------------------
Confidence 9999999999999999999999999999999999999999887643211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHhCCCChhhhhhcCCCChHHHHhhHHHHHHHHHHhhcCCCCCCcc
Q psy7894 574 KYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQPLTKPVE 653 (1006)
Q Consensus 574 lavlk~L~~WRd~~ARe~D~s~~~VL~n~~L~~IA~~~P~~l~~L~~~~~~~p~~VR~~g~eLl~lI~~Ar~~~~~~~~~ 653 (1006)
+ ... |.-.+ ..|..
T Consensus 483 ----~-----------------------------------------------------------~~~--a~g~~-~sp~~ 496 (687)
T KOG2206|consen 483 ----Q-----------------------------------------------------------NLT--ASGRK-SSPTK 496 (687)
T ss_pred ----h-----------------------------------------------------------chh--hccCC-CCCcc
Confidence 0 000 00001 11110
Q ss_pred ccCCccccccccccccccCCCCCcccccccCCCCCCCCCCcccCCCCCccCCcCccccceeEEeeecccccccc-chhhH
Q psy7894 654 KLQPSLDGMKKKKQQQQVSPPHDSMDCLNYKGLPPVFPNNIICAPSNTHLSSYDPQDKKIAQIGLFFEDKMKIG-SNKYQ 732 (1006)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~~~~~~~~-~~~~~ 732 (1006)
..++ -.+..+.|||.+.-- . ..+.+ -++|++++.... --.+.
T Consensus 497 -----v~~~----l~e~i~~~~d~~e~~--s---------s~sl~-----------------~~~~~~~~k~ss~~g~l~ 539 (687)
T KOG2206|consen 497 -----VDEI----LIEPISEPHDTGERA--S---------SSSLE-----------------KSLVNESKKSSSGLGKLL 539 (687)
T ss_pred -----hhhh----hhccccccccccccc--c---------ccccc-----------------hhhhcccccccccccccc
Confidence 0001 012344566621111 0 00001 034444443332 12233
Q ss_pred hhhhhhhhccCcccccccchhhhhhhhhhhhhhhHHhhhhcccCCCcccccCCCcccchhHHHHHhhhHHHHHHHHHHHH
Q psy7894 733 KIKLKTSRFETPYQRFLKSKEYAKAIQEKVDKENAEQKKIDALTPQVKTEPEENVKITQEPVVLKQIKSEEKEKVEMEKE 812 (1006)
Q Consensus 733 k~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1006)
|.+..++.+|+++++ | +++| .+..+++...+|+..+++
T Consensus 540 K~~~d~~~~ed~~~k----------i-------------------------~~~~-------~~~ra~~~~skk~~~~~~ 577 (687)
T KOG2206|consen 540 KEEHDEEVSEDLPNK----------I-------------------------ETED-------PRIRAQEFKSKKANVDTI 577 (687)
T ss_pred hhhhhHHhhhhhhhh----------h-------------------------cccC-------ccccchhhhccccccchh
Confidence 888888888887766 2 5666 445567788888889999
Q ss_pred HHHHHHHHHHHHhhcCcchhhhhccCcccchhhhhcccccCCCCCCCCCCCCCccchhhhhccccCCCCCCCCCCCCCCC
Q psy7894 813 KRKKILREREEEKEEQPATKKIKVEKPEESNEKTKQHKIKSEPKENDSSKEKPEESNEKTKRHKIKSEPKENDSSKGKSG 892 (1006)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (1006)
+++.. + ..|+++.+ ++++.+ |+++.++++++| |+.....+++++.-+
T Consensus 578 ~~~~~-~----------~~~~~~~e---e~~~v~------~~~r~t~~e~~~--------~~~lv~~k~k~~~d~----- 624 (687)
T KOG2206|consen 578 KFESE-K----------LVVKVKLE---EESTVK------SESRVTSSEIDK--------KILLVVKKDKDKKDE----- 624 (687)
T ss_pred hhccc-c----------cccccchh---hhhccc------cCCCcCcccccc--------hhhhccccccccccc-----
Confidence 98885 2 77888887 555544 999999999999 888888777643222
Q ss_pred CCcccccccccccccccc--CCCCCcc---cccCCCCcccc
Q psy7894 893 GTISTVDFSKVNYNKYMA--KPGKSNQ---KKKGKGGKQNK 928 (1006)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~ 928 (1006)
+|+||.+++|+|.+ +++ |+| |.|.+.+|++.
T Consensus 625 ----s~e~sts~~ka~~~~~~s~-s~~~~~~~~~p~~~~~~ 660 (687)
T KOG2206|consen 625 ----SKEKSTSDKKAFDSSSKSP-SKQPEQNNQQPKKKEVD 660 (687)
T ss_pred ----chhhccchHhHhhccccCc-ccCCccccccccccccc
Confidence 45999999999999 444 444 77777766543
|
|
| >PRK10829 ribonuclease D; Provisional | Back alignment and domain information |
|---|
| >TIGR01388 rnd ribonuclease D | Back alignment and domain information |
|---|
| >COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins | Back alignment and domain information |
|---|
| >cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins | Back alignment and domain information |
|---|
| >cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins | Back alignment and domain information |
|---|
| >cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins | Back alignment and domain information |
|---|
| >PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides | Back alignment and domain information |
|---|
| >cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins | Back alignment and domain information |
|---|
| >cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins | Back alignment and domain information |
|---|
| >smart00474 35EXOc 3'-5' exonuclease | Back alignment and domain information |
|---|
| >PRK05755 DNA polymerase I; Provisional | Back alignment and domain information |
|---|
| >PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ] | Back alignment and domain information |
|---|
| >cd00007 35EXOc 3'-5' exonuclease | Back alignment and domain information |
|---|
| >cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins | Back alignment and domain information |
|---|
| >cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases | Back alignment and domain information |
|---|
| >PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases | Back alignment and domain information |
|---|
| >PF00570 HRDC: HRDC domain Bloom syndrome | Back alignment and domain information |
|---|
| >smart00341 HRDC Helicase and RNase D C-terminal | Back alignment and domain information |
|---|
| >COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG2207|consensus | Back alignment and domain information |
|---|
| >PF00570 HRDC: HRDC domain Bloom syndrome | Back alignment and domain information |
|---|
| >KOG2206|consensus | Back alignment and domain information |
|---|
| >TIGR00593 pola DNA polymerase I | Back alignment and domain information |
|---|
| >smart00341 HRDC Helicase and RNase D C-terminal | Back alignment and domain information |
|---|
| >TIGR01388 rnd ribonuclease D | Back alignment and domain information |
|---|
| >PRK10829 ribonuclease D; Provisional | Back alignment and domain information |
|---|
| >cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases | Back alignment and domain information |
|---|
| >COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >KOG4373|consensus | Back alignment and domain information |
|---|
| >cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK06310 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >PRK07740 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PRK06807 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins | Back alignment and domain information |
|---|
| >PRK07942 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK08517 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins | Back alignment and domain information |
|---|
| >cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins | Back alignment and domain information |
|---|
| >PRK05711 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >TIGR01298 RNaseT ribonuclease T | Back alignment and domain information |
|---|
| >TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family | Back alignment and domain information |
|---|
| >TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK07883 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial | Back alignment and domain information |
|---|
| >PRK09145 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK05168 ribonuclease T; Provisional | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases | Back alignment and domain information |
|---|
| >PRK05601 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK06309 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK09146 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06127 DEDDh DEDDh 3'-5' exonuclease domain family | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >KOG2405|consensus | Back alignment and domain information |
|---|
| >COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T | Back alignment and domain information |
|---|
| >PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A | Back alignment and domain information |
|---|
| >cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins | Back alignment and domain information |
|---|
| >cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III | Back alignment and domain information |
|---|
| >cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >KOG2249|consensus | Back alignment and domain information |
|---|
| >PRK00448 polC DNA polymerase III PolC; Validated | Back alignment and domain information |
|---|
| >cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 | Back alignment and domain information |
|---|
| >KOG2405|consensus | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK09182 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK07247 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >PRK07983 exodeoxyribonuclease X; Provisional | Back alignment and domain information |
|---|
| >PRK11779 sbcB exonuclease I; Provisional | Back alignment and domain information |
|---|
| >PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner | Back alignment and domain information |
|---|
| >COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF09281 Taq-exonuc: Taq polymerase, exonuclease; InterPro: IPR015361 This domain is found in prokaryotic Taq DNA polymerase (thermostable), where it assumes a ribonuclease H-like motif | Back alignment and domain information |
|---|
| >cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins | Back alignment and domain information |
|---|
| >cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1006 | ||||
| 3saf_A | 428 | Crystal Structure Of The Human Rrp6 Catalytic Domai | 1e-104 | ||
| 3saf_A | 428 | Crystal Structure Of The Human Rrp6 Catalytic Domai | 3e-20 | ||
| 3sah_A | 428 | Crystal Structure Of The Human Rrp6 Catalytic Domai | 1e-104 | ||
| 3sah_A | 428 | Crystal Structure Of The Human Rrp6 Catalytic Domai | 3e-20 | ||
| 2hbj_A | 410 | Structure Of The Yeast Nuclear Exosome Component, R | 4e-80 | ||
| 2hbj_A | 410 | Structure Of The Yeast Nuclear Exosome Component, R | 1e-07 | ||
| 2cpr_A | 124 | Solution Structure Of The Hrdc Domain Of Human Exos | 8e-24 | ||
| 2cpr_A | 124 | Solution Structure Of The Hrdc Domain Of Human Exos | 8e-21 | ||
| 1yt3_A | 375 | Crystal Structure Of Escherichia Coli Rnase D, An E | 1e-15 | ||
| 3cym_A | 440 | Crystal Structure Of Protein Bad_0989 From Bifidoba | 1e-06 |
| >pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With D313n Mutation In The Active Site Length = 428 | Back alignment and structure |
|
| >pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With D313n Mutation In The Active Site Length = 428 | Back alignment and structure |
| >pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With Y436a Mutation In The Catalytic Site Length = 428 | Back alignment and structure |
| >pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With Y436a Mutation In The Catalytic Site Length = 428 | Back alignment and structure |
| >pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Reveals An Interplay Between The Active Site And The Hrdc Domain Length = 410 | Back alignment and structure |
| >pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Reveals An Interplay Between The Active Site And The Hrdc Domain Length = 410 | Back alignment and structure |
| >pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome Component 10 Length = 124 | Back alignment and structure |
| >pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome Component 10 Length = 124 | Back alignment and structure |
| >pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An Exoribonuclease Involved In Structured Rna Processing Length = 375 | Back alignment and structure |
| >pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium Adolescentis Length = 440 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Length = 428 | Back alignment and structure |
|---|
Score = 428 bits (1101), Expect = e-141
Identities = 191/406 (47%), Positives = 264/406 (65%), Gaps = 31/406 (7%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILL---------------------- 206
I RPQL+F+ K+DNS F PK+ KPNA KPL L
Sbjct: 2 IIRPQLKFREKIDNS-NTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALA 60
Query: 207 -------EKYDAIESFCHPYEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVT 259
+ + F HPY+YEL+ + P + L+ +P+ P+ +TP I+ +++
Sbjct: 61 DFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELV 120
Query: 260 QLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTD 319
+L +L QE A++LE+H+YRS+ G TCLMQISTR +D+I+DTL+LR D+ +LNE LTD
Sbjct: 121 ELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTD 180
Query: 320 KNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKT 379
IVKVFHGADSDI+WLQKDFGLYVV MFDTHQA + L + R SL +LLK YC+VDS+K
Sbjct: 181 PAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQ 240
Query: 380 FQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICK 439
+QL DWR RPLPE + YAR DTHYLLY+YD M+L++ +G+ + + SR+IC
Sbjct: 241 YQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICL 300
Query: 440 LKYEKPVFNEEGYMNIFRSHAL-LNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLL 498
K+ KP+F +E Y+ ++R LN QQ A + L+ WRD+ AR +DES GYVLPNHM+L
Sbjct: 301 KKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMML 360
Query: 499 QMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKARLQSLTKP 544
++A+ +P++ QGI ACCNPVP V++ + ++H +I +AR L K
Sbjct: 361 KIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKS 406
|
| >3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Length = 428 | Back alignment and structure |
|---|
| >2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Length = 410 | Back alignment and structure |
|---|
| >2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Length = 410 | Back alignment and structure |
|---|
| >1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Length = 375 | Back alignment and structure |
|---|
| >1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Length = 375 | Back alignment and structure |
|---|
| >3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 440 | Back alignment and structure |
|---|
| >3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 440 | Back alignment and structure |
|---|
| >2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Length = 208 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Length = 206 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1006 | |||
| 3saf_A | 428 | Exosome component 10; exoribonuclease, RNA exosome | 100.0 | |
| 2hbj_A | 410 | Exosome complex exonuclease RRP6; RNA metabolism, | 100.0 | |
| 1yt3_A | 375 | Ribonuclease D, RNAse D; exoribonuclease, exonucle | 100.0 | |
| 3cym_A | 440 | Uncharacterized protein BAD_0989; structural genom | 100.0 | |
| 2e6m_A | 208 | Werner syndrome ATP-dependent helicase homolog; AP | 99.93 | |
| 1vk0_A | 206 | Hypothetical protein; homohexamer, AT5G06450, stru | 99.92 | |
| 2kfn_A | 605 | Klenow fragment of DNA polymerase I; complex (poly | 99.75 | |
| 3pv8_A | 592 | DNA polymerase I; DNA polymerase I, protein-DNA co | 99.66 | |
| 1x9m_A | 698 | DNA polymerase; DNA ploymerase, N-2-acetylaminoflu | 99.46 | |
| 1wud_A | 89 | ATP-dependent DNA helicase RECQ; DNA-binding domai | 99.31 | |
| 4dfk_A | 540 | DNA polymerase I, thermostable; DNA polymerase, tr | 99.26 | |
| 3saf_A | 428 | Exosome component 10; exoribonuclease, RNA exosome | 99.26 | |
| 2rhf_A | 77 | DNA helicase RECQ; HRDC, D. radiodurans, ATP-bindi | 99.24 | |
| 2kv2_A | 85 | Bloom syndrome protein; HRDC domain, disease mutat | 99.15 | |
| 2rrd_A | 101 | BLM HRDC domain, HRDC domain from bloom syndrome p | 99.15 | |
| 1wud_A | 89 | ATP-dependent DNA helicase RECQ; DNA-binding domai | 99.09 | |
| 2e1f_A | 103 | Werner syndrome ATP-dependent helicase; HRDC domai | 99.04 | |
| 2dgz_A | 113 | Werner syndrome protein variant; HRDC domain, stru | 99.04 | |
| 2rhf_A | 77 | DNA helicase RECQ; HRDC, D. radiodurans, ATP-bindi | 98.98 | |
| 2kv2_A | 85 | Bloom syndrome protein; HRDC domain, disease mutat | 98.92 | |
| 2rrd_A | 101 | BLM HRDC domain, HRDC domain from bloom syndrome p | 98.92 | |
| 2hbj_A | 410 | Exosome complex exonuclease RRP6; RNA metabolism, | 98.85 | |
| 1yt3_A | 375 | Ribonuclease D, RNAse D; exoribonuclease, exonucle | 98.84 | |
| 2e1f_A | 103 | Werner syndrome ATP-dependent helicase; HRDC domai | 98.75 | |
| 2dgz_A | 113 | Werner syndrome protein variant; HRDC domain, stru | 98.72 | |
| 3cym_A | 440 | Uncharacterized protein BAD_0989; structural genom | 98.53 | |
| 3v9w_A | 235 | Ribonuclease T; DEDD nucleases family, EXO-nucleas | 98.4 | |
| 1bgx_T | 832 | TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi | 98.26 | |
| 2p1j_A | 186 | POLIII, DNA polymerase III POLC-type; structural g | 97.41 | |
| 2f96_A | 224 | Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas | 97.19 | |
| 3mxm_B | 242 | Three prime repair exonuclease 1; RNAse H-like fol | 97.19 | |
| 1wlj_A | 189 | Interferon stimulated gene 20KDA; exoribonuclease, | 97.17 | |
| 3u3y_B | 314 | Three prime repair exonuclease 1; RNAse H fold, 3' | 96.69 | |
| 1y97_A | 238 | Three prime repair exonuclease 2; TREX2, hydrolase | 96.69 | |
| 2gui_A | 194 | DNA polymerase III epsilon subunit; DNA polymerase | 96.54 | |
| 1zbh_A | 299 | 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif | 94.84 | |
| 2qxf_A | 482 | Exodeoxyribonuclease I; alpha-beta domain, DNAQ su | 94.69 | |
| 1w0h_A | 204 | 3'-5' exonuclease ERI1; nuclease domain, hydrolase | 93.74 | |
| 1d8b_A | 81 | SGS1 RECQ helicase; five helices, three-helical bu | 93.6 | |
| 1zbu_A | 349 | ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; | 92.25 | |
| 2xri_A | 224 | ERI1 exoribonuclease 3; hydrolase, metal binding; | 92.21 | |
| 1d8b_A | 81 | SGS1 RECQ helicase; five helices, three-helical bu | 90.87 | |
| 1qht_A | 775 | Protein (DNA polymerase); archaea, hyperthermostab | 88.24 | |
| 3cg7_A | 308 | CRN-4, cell death-related nuclease 4; hydrolase, a | 87.62 | |
| 2igi_A | 180 | Oligoribonuclease; RNAse, exoribonuclease, exonucl | 86.8 | |
| 2gbz_A | 194 | Oligoribonuclease; ORN, deddh, structural genomics | 82.44 |
| >3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-72 Score=643.73 Aligned_cols=375 Identities=51% Similarity=0.901 Sum_probs=354.6
Q ss_pred CCCCcccccCccCCCCCCCCCcccCCCCCCCCChhhhhhhccc-----------------------------cccccCCC
Q psy7894 168 EIERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD-----------------------------AIESFCHP 218 (1006)
Q Consensus 168 ~i~kPQ~~F~~~vDNs~~~pf~p~l~~Kpna~~pl~~~~~~~~-----------------------------~~~~~~HP 218 (1006)
.|.|||+.|+++||||+ +||+|+|++||||++||+.++.... ....|.||
T Consensus 1 ~i~~pq~~f~~~~dn~~-~p~~p~~~~kp~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp 79 (428)
T 3saf_A 1 SIIRPQLKFREKIDNSN-TPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHP 79 (428)
T ss_dssp CCCCGGGGCSSCCCCSS-SCCCCCCCCCTTCSSCCCGGGSGGGC-----------------------------CCSSSCT
T ss_pred CCCCchhccCCCCCCCC-CCCCCccCCCCcccCCHHHHhhhhhhcccccCcccccccchhhhccccccccccCCCCCCCC
Confidence 38999999999999998 8999999999999999998664321 24579999
Q ss_pred cHhhhccCCCCccccccCCCCcCCCCCCCCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCce
Q psy7894 219 YEYELDLYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKD 298 (1006)
Q Consensus 219 Ye~Ei~~~~~p~~~~~~~~p~~~~p~~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt~~~~ 298 (1006)
|++||.+++||++++..++|+.+.|+++++|.+|+|.++|.++++.+..++.||||+|+++.++|.+.+|+|||++++++
T Consensus 80 y~~ei~~~~~~~~~~~~~~~~~~~p~~~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~ 159 (428)
T 3saf_A 80 YQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTED 159 (428)
T ss_dssp THHHHHTCCCCHHHHSCCCCCCCCCGGGSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECTTCSSCEEEEEEEECSSCE
T ss_pred hHHHHhcCCCCHHHhCcCCCCCCCCCCCCCcEEECCHHHHHHHHHHHhcCCeEEEEEEecCCCCCCCeEEEEEEEeCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcchhhhHHHHHHHHcCCCceeeecchhhHHHHHHHHhCCccCeeechHhHHHhCCCCCccHHHHHHHHcCCCCCc
Q psy7894 299 YIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDK 378 (1006)
Q Consensus 299 yIID~laL~~~L~~L~elLedp~IvKV~Hgak~Dl~~L~rd~GI~~~nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK 378 (1006)
|+||++.+..++..|+++|+|++|.||+||+++|+.+|++.+|+.+.++||||+|+|+||++++||+.|+++|||+.++|
T Consensus 160 ~lidpl~l~~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K 239 (428)
T 3saf_A 160 FIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNK 239 (428)
T ss_dssp EEEETTTTGGGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCC
T ss_pred EEEEeccchhhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCCCCCHHHHHHHHcCCCCCc
Confidence 99999887657789999999999999999999999999889999999999999999999998899999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHhchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhHHHHhhhcCCCCCChhhhHHHHHh
Q psy7894 379 TFQLFDWRHRPLPEPAIQYARTDTHYLLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNEEGYMNIFRS 458 (1006)
Q Consensus 379 ~~q~sDW~~RPLs~eql~YAA~DA~yLL~Lyd~L~~eL~e~g~~~~~~l~~v~~es~~l~l~~ye~~~~~~~~~~~l~~k 458 (1006)
+.+.+||+.|||+.+|+.||+.||+++++||+.|..+|.+.|.+..+|+++++++|+.+|+++|+++.+++..|.+++++
T Consensus 240 ~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (428)
T 3saf_A 240 QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRK 319 (428)
T ss_dssp TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCCCTTGGGHHHHT
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999875567999999999999999999888888899999887
Q ss_pred hc-cCCHHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCHHHHhhccCCCchhHHhhHHHHHHHHHHHh
Q psy7894 459 HA-LLNNQQKYALRELYKWRDRIARDKDESTGYVLPNHMLLQMAQSIPRDIQGIFACCNPVPQTVKEHVLDIHAIILKAR 537 (1006)
Q Consensus 459 ~~-~L~~~qlavlr~L~~WRD~~AR~~Dep~~~VL~d~~L~~LA~~~P~s~~~L~~~~g~~~~~vR~~~~eil~iI~~Ar 537 (1006)
.+ .++++++++|++|++||+++||++|+|+++||+|++|++||+.+|+|..+|.+|+|+.++.+|+||++|+++|++|+
T Consensus 320 ~~~~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l~~I~~a~ 399 (428)
T 3saf_A 320 QKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAR 399 (428)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHHHHHHHHH
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 76 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC
Q psy7894 538 LQSLTK 543 (1006)
Q Consensus 538 ~~p~~~ 543 (1006)
+.|..+
T Consensus 400 ~~p~~~ 405 (428)
T 3saf_A 400 EMPLLK 405 (428)
T ss_dssp TSCCCH
T ss_pred hCCCcC
Confidence 988763
|
| >2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* | Back alignment and structure |
|---|
| >1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 | Back alignment and structure |
|---|
| >3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} | Back alignment and structure |
|---|
| >2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* | Back alignment and structure |
|---|
| >1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A | Back alignment and structure |
|---|
| >2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* | Back alignment and structure |
|---|
| >3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... | Back alignment and structure |
|---|
| >1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* | Back alignment and structure |
|---|
| >1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1 | Back alignment and structure |
|---|
| >4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... | Back alignment and structure |
|---|
| >3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A | Back alignment and structure |
|---|
| >2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1 | Back alignment and structure |
|---|
| >2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A | Back alignment and structure |
|---|
| >2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1 | Back alignment and structure |
|---|
| >2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans} | Back alignment and structure |
|---|
| >2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* | Back alignment and structure |
|---|
| >1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 | Back alignment and structure |
|---|
| >2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A | Back alignment and structure |
|---|
| >2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1 | Back alignment and structure |
|---|
| >3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} | Back alignment and structure |
|---|
| >3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A | Back alignment and structure |
|---|
| >1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* | Back alignment and structure |
|---|
| >2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
| >2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A | Back alignment and structure |
|---|
| >1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* | Back alignment and structure |
|---|
| >1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* | Back alignment and structure |
|---|
| >1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* | Back alignment and structure |
|---|
| >1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1 | Back alignment and structure |
|---|
| >1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1 | Back alignment and structure |
|---|
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A | Back alignment and structure |
|---|
| >3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A | Back alignment and structure |
|---|
| >2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A | Back alignment and structure |
|---|
| >2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1006 | ||||
| d2hbka2 | 292 | c.55.3.5 (A:129-420) Exosome complex exonuclease R | 6e-62 | |
| d1vk0a_ | 206 | c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thal | 6e-34 | |
| d2cpra1 | 113 | a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 | 1e-22 | |
| d2cpra1 | 113 | a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 | 5e-18 | |
| d1yt3a3 | 193 | c.55.3.5 (A:1-193) Ribonuclease D, catalytic domai | 9e-22 | |
| d1kfsa1 | 195 | c.55.3.5 (A:324-518) Exonuclease domain of prokary | 2e-15 | |
| d2hbka1 | 96 | a.60.8.4 (A:421-516) Exosome complex exonuclease R | 3e-14 | |
| d2hbka1 | 96 | a.60.8.4 (A:421-516) Exosome complex exonuclease R | 1e-13 | |
| d1yt3a1 | 101 | a.60.8.3 (A:194-294) Ribonuclease D {Escherichia c | 2e-11 | |
| d1yt3a1 | 101 | a.60.8.3 (A:194-294) Ribonuclease D {Escherichia c | 5e-11 | |
| d2hhva1 | 171 | c.55.3.5 (A:298-468) Exonuclease domain of prokary | 8e-11 |
| >d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exosome complex exonuclease RRP6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 210 bits (535), Expect = 6e-62
Identities = 131/285 (45%), Positives = 182/285 (63%), Gaps = 9/285 (3%)
Query: 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYDA----IESFCHPYEYELD 224
+E+PQL+FK +DNS F P LKEKPNALKPL+ L D + HPYEYE+D
Sbjct: 1 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEID 60
Query: 225 LYVPKEDFLKCEEPKQALPLSDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQ 284
+ L+ E + D+ + + ++ ++ +LK +EIA+DLE+H+YRSY
Sbjct: 61 HQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYY 120
Query: 285 GYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVKVFHGADSDIKWLQKDFGLYV 344
G CLMQISTR++DY+VDTLKLRE+L +LNEV T+ +IVKVFHGA DI WLQ+D GLYV
Sbjct: 121 GIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYV 180
Query: 345 VGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404
VG+FDT+ A K + +PR SLAYLL+++ + + K +QL DWR RPL +P AR DTH+
Sbjct: 181 VGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 240
Query: 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFNE 449
LL +YD ++ L + N + SRN+ K ++E +
Sbjct: 241 LLNIYDQLRNKLI-----ESNKLAGVLYESRNVAKRRFEYSKYRP 280
|
| >d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 206 | Back information, alignment and structure |
|---|
| >d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Length = 193 | Back information, alignment and structure |
|---|
| >d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Length = 195 | Back information, alignment and structure |
|---|
| >d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 96 | Back information, alignment and structure |
|---|
| >d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 96 | Back information, alignment and structure |
|---|
| >d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} Length = 101 | Back information, alignment and structure |
|---|
| >d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} Length = 101 | Back information, alignment and structure |
|---|
| >d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Length = 171 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1006 | |||
| d2hbka2 | 292 | Exosome complex exonuclease RRP6 {Baker's yeast (S | 100.0 | |
| d1yt3a3 | 193 | Ribonuclease D, catalytic domain {Escherichia coli | 100.0 | |
| d1vk0a_ | 206 | Hypothetical protein AT5G06450 {Thale-cress (Arabi | 99.9 | |
| d1kfsa1 | 195 | Exonuclease domain of prokaryotic DNA polymerase { | 99.88 | |
| d2hhva1 | 171 | Exonuclease domain of prokaryotic DNA polymerase { | 99.78 | |
| d2cpra1 | 113 | Exosome component 10, EXOSC10 {Human (Homo sapiens | 99.73 | |
| d1yt3a1 | 101 | Ribonuclease D {Escherichia coli [TaxId: 562]} | 99.59 | |
| d2hbka1 | 96 | Exosome complex exonuclease RRP6 domain {Baker's y | 99.58 | |
| d2cpra1 | 113 | Exosome component 10, EXOSC10 {Human (Homo sapiens | 99.48 | |
| d2hbka1 | 96 | Exosome complex exonuclease RRP6 domain {Baker's y | 99.39 | |
| d1yt3a1 | 101 | Ribonuclease D {Escherichia coli [TaxId: 562]} | 99.32 | |
| d1wuda1 | 77 | HRDC domain from RecQ helicase {Escherichia coli [ | 99.15 | |
| d1wuda1 | 77 | HRDC domain from RecQ helicase {Escherichia coli [ | 98.97 | |
| d2e1fa1 | 94 | Werner syndrome ATP-dependent helicase, WRN {Human | 98.94 | |
| d2e1fa1 | 94 | Werner syndrome ATP-dependent helicase, WRN {Human | 98.64 | |
| d1wlja_ | 173 | Interferon-stimulated gene 20 kDa protein, ISG20 { | 97.82 | |
| d1x9ma1 | 204 | Exonuclease domain of T7 DNA polymerase {Bacteriop | 97.29 | |
| d3b6oa1 | 226 | Three prime repair exonuclease 1, TREX1 {Mouse (Mu | 94.99 | |
| d1y97a1 | 228 | Three prime repair exonuclease 2, TREX2 {Human (Ho | 93.86 | |
| d2guia1 | 174 | N-terminal exonuclease domain of the epsilon subun | 93.36 | |
| d1tgoa1 | 347 | Exonuclease domain of family B DNA polymerases {Ar | 91.94 | |
| d2f96a1 | 202 | Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287 | 80.64 |
| >d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exosome complex exonuclease RRP6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-59 Score=508.80 Aligned_cols=275 Identities=47% Similarity=0.797 Sum_probs=260.3
Q ss_pred CCCcccccCccCCCCCCCCCcccCCCCCCCCChhhhhhhccc----cccccCCCcHhhhccCCCCccccccCCCCcCCCC
Q psy7894 169 IERPQLQFKVKVDNSYEQLFEPKLKEKPNALKPLAILLEKYD----AIESFCHPYEYELDLYVPKEDFLKCEEPKQALPL 244 (1006)
Q Consensus 169 i~kPQ~~F~~~vDNs~~~pf~p~l~~Kpna~~pl~~~~~~~~----~~~~~~HPYe~Ei~~~~~p~~~~~~~~p~~~~p~ 244 (1006)
|+|||+.|+++||||+++||+|+|++||||++||+..+.... ....+.|||++||.++.||++++...+|.++.++
T Consensus 1 i~~pq~~f~~~~dn~~~~pf~p~l~~k~~a~~~l~~~~~~~~~~~~~~~~~~hpy~~ei~~~~~~~~~~~~~~~~~~~~~ 80 (292)
T d2hbka2 1 VEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSW 80 (292)
T ss_dssp CCCGGGGCSSCCCCCCCSCCCCCCSCCSSCSSCHHHHSSCCCCCSSSCSCCCCTTHHHHHHSCCCGGGSSCCCCCCCCCG
T ss_pred CCChhhhcCCCCCCCCCCCCccccccCCCcCccchhhhcccccccCCCccCCCCCHHHHhcCCCChhhcCcCCCCCCCCC
Confidence 789999999999999988999999999999999998764332 3567899999999999999999999999999999
Q ss_pred CCCCcEEeCCHHHHHHHHHHHhcCCeEEEEeeeccCCccCCcEEEEEEEeCCceEEEeCcchhhhHHHHHHHHcCCCcee
Q psy7894 245 SDTPLMMITEPEQVTQLVSELKQQQEIAIDLEYHNYRSYQGYTCLMQISTRDKDYIVDTLKLREDLEVLNEVLTDKNIVK 324 (1006)
Q Consensus 245 ~~t~~~lIdT~e~L~~lle~L~~a~~IAVDtE~~~~rty~g~lcLIQISt~~~~yIID~laL~~~L~~L~elLedp~IvK 324 (1006)
+.+++.||+|.++|.++++.|..+..||||+|++++++|.|.+||||||+++.+||||++.++..+..|+++|+|++|+|
T Consensus 81 ~~t~~~~Vdt~e~L~~li~~L~~~~~iavDtE~~~~~s~~g~l~LiQiat~~~~~iiD~~~l~~~l~~L~~ll~d~~I~K 160 (292)
T d2hbka2 81 DDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVK 160 (292)
T ss_dssp GGCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTGGGGHHHHTCTTSEE
T ss_pred CCCCcEEeCCHHHHHHHHHHHhcCCcEEEEEEeCcCcccCCeEEEEEEEeCCccEEEEecccccchHHHHHHHhccCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999998777889999999999999
Q ss_pred eecchhhHHHHHHHHhCCccCeeechHhHHHhCCCCCccHHHHHHHHcCCCCCcccccccCCCCCCChHHHHHHHhchhH
Q psy7894 325 VFHGADSDIKWLQKDFGLYVVGMFDTHQACKFLPMPRQSLAYLLKHYCDVDSDKTFQLFDWRHRPLPEPAIQYARTDTHY 404 (1006)
Q Consensus 325 V~Hgak~Dl~~L~rd~GI~~~nlFDTqlAAyLLg~~~~SLa~Lve~yLgv~LdK~~q~sDW~~RPLs~eql~YAA~DA~y 404 (1006)
||||+++|+.||++++|+.++++|||++|+++||..++||++|+++|||+.++|.+|++||+.|||+++|+.|||.||+|
T Consensus 161 V~H~~~~Di~~L~~~~g~~~~n~fDT~~aa~~l~~~~~sL~~L~~~yl~~~ldK~~q~SdW~~RPLs~~qi~YAa~Da~~ 240 (292)
T d2hbka2 161 VFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHF 240 (292)
T ss_dssp EESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHT
T ss_pred EeechHhhhhhhhhcccccccchHHHHHHHHHhCccccchHHHHHHhhhhcccccccccccccCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHhhHHHHhhhcCCCCCC
Q psy7894 405 LLYVYDCMKLDLSAAAHGKQNLVLSTFTNSRNICKLKYEKPVFN 448 (1006)
Q Consensus 405 LL~Lyd~L~~eL~e~g~~~~~~l~~v~~es~~l~l~~ye~~~~~ 448 (1006)
|++||+.|+++|.+.| .+.+|+++|+.+|+++|+++.++
T Consensus 241 Ll~ly~~L~~~L~~~~-----~l~~v~~e~~~~~~~~~e~~~~~ 279 (292)
T d2hbka2 241 LLNIYDQLRNKLIESN-----KLAGVLYESRNVAKRRFEYSKYR 279 (292)
T ss_dssp HHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCEECCGGGC
T ss_pred HHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999765 57899999999999999876443
|
| >d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
| >d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|