Psyllid ID: psy8072

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580----

MSKRGVDCEDASSSGQPPVKKVQFEPIRIGPISTLEEMDIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILLQRFDAETADESESKSQAALRALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGYRLHAGGSGFDSRWGRSFSLCLMFGVHSAS

cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccc

cccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHcHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccccEEHHHHccccccc

mskrgvdcedasssgqppvkkvqfepirigpistlEEMDIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILLQRfdaetadeseSKSQAALRAldvcappaygntnvMCLAITDENEATTSFLMQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGelnnsngdpipslDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMhtedgkekdvikpeetmsnvsQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWsvnptslttqlpRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNlaaneqtgpINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRiserspwpsgyrlhaggsgfdsrwgrSFSLCLMFGVHSAS

mskrgvdcedasssgqppvkkvqfepIRIGPISTLEEMDIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQlekrqtqddavLNVVNRYWNQLNEDIRILLQRFDAETADESESKSQAALRALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILkgelnnsngdpIPSLDEAVREANIEIQtenrnlteqnTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMhtedgkekdvikpeetmsnvsqkkLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETnlaaneqtgpINREMRHLITSlqnhnkqikgevnrykrkykeTSAEiqkvriserspwpsgyRLHAGGSGFDSRWGRSFSLCLMFGVHSAS

***********************FEPIRIGPISTLEEMDIKVLKFQN*******************************DAVLNVVNRYWNQLNEDIRILLQRFD**************LRALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKG*****************************************YH*I************************************************************************************************************HLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNEN****************************************************IRKEYEMLRIEFETNLA***************I**************************************WPSGYRLHAGGSGFDSRWGRSFSLCLMFGV****

**************************************************************************************RYWNQL*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************WGRSFSLCLMFGVHS**

******************VKKVQFEPIRIGPISTLEEMDIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILLQRFDA***********AALRALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGYRLHAGGSGFDSRWGRSFSLCLMFGVHSAS

******************VKKVQFEPIRIGPISTLEEMDIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILLQRFDA*************************************ENEATTSFLMQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMH****************SNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERSPWPSGYR***GGSGFDSRWGRSFSLCLMFGV****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSKRGVDCEDASSSGQPPVKKVQFEPIRIGPISTLEEMDIKVLKFQxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTQDDAVLNVVNRYWNQLNEDIRILLQRFDAETADESESKSQAALRALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAxxxxxxxxxxxxxxxxxxxxxLHAKYHSISLKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHTEDGKEKDVIKPEETMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVxxxxxxxxxxxxxxxxxxxxxxxxxxxxFETNLAANEQTGPINREMRHLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERSPWPSGYRLHAGGSGFDSRWGRSFSLCLMFGVHSAS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		584	2.2.26 [Sep-21-2011]
Q9VRP9		1044	E3 ubiquitin-protein liga	yes	N/A	0.869	0.486	0.562	1e-168
O75150		1001	E3 ubiquitin-protein liga	yes	N/A	0.863	0.503	0.413	1e-102
Q4R7K7		1001	E3 ubiquitin-protein liga	N/A	N/A	0.856	0.499	0.412	1e-101
Q5RAU7		1001	E3 ubiquitin-protein liga	yes	N/A	0.840	0.490	0.418	1e-101
Q3U319		1001	E3 ubiquitin-protein liga	yes	N/A	0.854	0.498	0.417	1e-100
Q8CJB9		1002	E3 ubiquitin-protein liga	yes	N/A	0.888	0.517	0.404	7e-99
Q5ZLS3		984	E3 ubiquitin-protein liga	yes	N/A	0.816	0.484	0.399	2e-91
Q5DTM8		973	E3 ubiquitin-protein liga	no	N/A	0.830	0.498	0.392	1e-88
A2VDP1		975	E3 ubiquitin-protein liga	no	N/A	0.823	0.493	0.391	7e-88
Q5VTR2		975	E3 ubiquitin-protein liga	no	N/A	0.830	0.497	0.388	9e-88

>sp\|Q9VRP9\|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1 PE=1 SV=2	Back alignment and function desciption

 Score =  590 bits (1521), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 341/606 (56%), Positives = 407/606 (67%), Gaps = 98/606 (16%)

Query: 1   MSKRGVDCEDASS-------SGQPPVKKVQFEPIRIGPISTLEEMDIKVLKFQNKKLAQR 53
           MSKR  D    SS       +GQPP+KKV FEP  IGP+STLEEMDIKVL+FQNKKLAQR
Sbjct: 1   MSKRSADDATGSSCLVAAAAAGQPPIKKVHFEPHLIGPVSTLEEMDIKVLEFQNKKLAQR 60

Query: 54  IEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILLQRFDAETADESES 113
           IEQ+ + E ELR RIEQLEKRQTQDDAVLNVVNRYWNQLNEDIR+LLQRFDAETADE E+
Sbjct: 61  IEQRMRTEAELRHRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRVLLQRFDAETADELEN 120

Query: 114 KSQAALRALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLSTWDKEELDEKLANRVQVS 173
           +                           +ENE TTSFL QLSTWDKEELDEKLANRVQVS
Sbjct: 121 R---------------------------NENEVTTSFLAQLSTWDKEELDEKLANRVQVS 153

Query: 174 KRAVAKIIQAFDRLVQRNEKITMILKGE------------------LNNSNGDP------ 209
           KRAVAKI+Q  DRL+QRNEKIT +LKG+                     ++GD       
Sbjct: 154 KRAVAKIVQVIDRLMQRNEKITHVLKGDSLASAGSGSGAGAGGEEEQQQASGDAETTTSS 213

Query: 210 --IPSLDEAVREANIEIQTENRNLTEQNTKLHAKYHSISLKISELQDAVNGKETEAAELR 267
             + +L+E +++ +IEI +EN  L   NT LH K+H++SLK+ E QDA   KETE AEL+
Sbjct: 214 AGVHALEETLKQTHIEIMSENHKLQNLNTSLHEKFHTMSLKMKEYQDAHTAKETENAELK 273

Query: 268 NQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSN---- 323
           NQID+LQY+L K+  RNDKLENHL EA EK+K   Q++ +  K  +  K   T  +    
Sbjct: 274 NQIDELQYDLEKIHCRNDKLENHLAEAIEKLKAYHQIYGDPNKSTNSAKTPTTTGSGGAT 333

Query: 324 --VSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISW 381
             V+ + L++LQK+LEE +ELANNRLQELDKLH  HRE LK+VEKLKMD           
Sbjct: 334 TSVNSQLLEELQKELEEYRELANNRLQELDKLHATHRETLKEVEKLKMD----------- 382

Query: 382 LVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHL 441
                            IRQLPESVIVETTEYKCLQS +SVLYNE+   KT   E ++ L
Sbjct: 383 -----------------IRQLPESVIVETTEYKCLQSQFSVLYNESMQIKTMLDETRNQL 425

Query: 442 SASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEMLRIEFETNLAANEQT 501
             SKN   RQIE+ME+EEL+ QKK+R EM+Q+ED L+ IRKEYE LRIEFE N+AANEQT
Sbjct: 426 QTSKNQHLRQIEVMESEELIAQKKVRSEMIQMEDVLALIRKEYETLRIEFEQNMAANEQT 485

Query: 502 GPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVR--ISERSPWPSGYRLHA 559
            PINREMRHLITSLQNHN Q+KGEV RYKRKYK+TS +  K+R  +++      G +L A
Sbjct: 486 APINREMRHLITSLQNHNGQLKGEVQRYKRKYKDTSTDNLKLRQELADALATLEGNKLQA 545

Query: 560 --GGSG 563
             G +G
Sbjct: 546 ATGAAG 551

E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-117' of histone H2B. H2B 'Lys-117' ubiquitination gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation. It thereby plays a central role in histone code and gene regulation. Required for the expression of Notch target genes in development by affecting the levels of Su(H) in imaginal disk cells and stimulating the Su(H)-mediated transcription of Notch-specific genes.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|O75150\|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4	Back alignment and function description

>sp\|Q4R7K7\|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40 PE=2 SV=1	Back alignment and function description

>sp\|Q5RAU7\|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2 SV=1	Back alignment and function description

>sp\|Q3U319\|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2 SV=2	Back alignment and function description

>sp\|Q8CJB9\|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1 SV=1	Back alignment and function description

>sp\|Q5ZLS3\|BRE1A_CHICK E3 ubiquitin-protein ligase BRE1A OS=Gallus gallus GN=RNF20 PE=2 SV=1	Back alignment and function description

>sp\|Q5DTM8\|BRE1A_MOUSE E3 ubiquitin-protein ligase BRE1A OS=Mus musculus GN=Rnf20 PE=1 SV=2	Back alignment and function description

>sp\|A2VDP1\|BRE1A_BOVIN E3 ubiquitin-protein ligase BRE1A OS=Bos taurus GN=RNF20 PE=2 SV=1	Back alignment and function description

>sp\|Q5VTR2\|BRE1A_HUMAN E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens GN=RNF20 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		584
340711825		957	PREDICTED: e3 ubiquitin-protein ligase B	0.825	0.503	0.669	0.0
350402387		957	PREDICTED: E3 ubiquitin-protein ligase B	0.825	0.503	0.667	0.0
322796552		482	hypothetical protein SINV_06436 [Solenop	0.823	0.997	0.669	0.0
383857052		957	PREDICTED: E3 ubiquitin-protein ligase B	0.825	0.503	0.664	0.0
345483701		955	PREDICTED: E3 ubiquitin-protein ligase B	0.827	0.505	0.655	0.0
307199111		957	E3 ubiquitin-protein ligase Bre1 [Harpeg	0.825	0.503	0.662	0.0
242006288		989	ubiquitin-protein ligase BRE1A, putative	0.823	0.486	0.65	0.0
307180966		964	E3 ubiquitin-protein ligase Bre1 [Campon	0.825	0.5	0.656	0.0
380030127		953	PREDICTED: E3 ubiquitin-protein ligase B	0.825	0.505	0.653	0.0
189240891		976	PREDICTED: similar to CG10542 CG10542-PA	0.821	0.491	0.644	0.0

>gi\|340711825\|ref\|XP_003394469.1\| PREDICTED: e3 ubiquitin-protein ligase Bre1-like [Bombus terrestris]	Back alignment and taxonomy information

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/545 (66%), Positives = 421/545 (77%), Gaps = 63/545 (11%)

Query: 1   MSKRGVDCEDASSSGQPPVKKVQFEPIRIGPISTLEEMDIKVLKFQNKKLAQRIEQKNQV 60
           MSKR  D  D+ S  QPP+KKVQFEPI IGPISTLEEMD+KVL+FQNKKLAQR+EQ+++V
Sbjct: 1   MSKRPPDSGDSGS--QPPIKKVQFEPILIGPISTLEEMDMKVLQFQNKKLAQRLEQRHRV 58

Query: 61  EHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRILLQRFDAETADESESKSQAALR 120
           E ELR RIEQLEKRQ QDDAVLNVVNRYWNQLNEDIR+LLQRFDAETADESE+K      
Sbjct: 59  EAELRQRIEQLEKRQMQDDAVLNVVNRYWNQLNEDIRVLLQRFDAETADESENK------ 112

Query: 121 ALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLSTWDKEELDEKLANRVQVSKRAVAKI 180
                                +E+EATTSFLMQLS+WDKEELD+KLANRVQVSKRAV+K+
Sbjct: 113 ---------------------NESEATTSFLMQLSSWDKEELDDKLANRVQVSKRAVSKV 151

Query: 181 IQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHA 240
           +QAFDRL QRNEKIT+ LKGE +   GD  P++DE VR AN EIQ ENRNL   N +LH 
Sbjct: 152 VQAFDRLSQRNEKITLALKGEFD---GDEAPNIDEVVRRANSEIQMENRNLQAINIQLHE 208

Query: 241 KYHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKL 300
           KYH+ISLK+SELQD + GK+T AAELRNQ+DDLQYEL+KV++RNDKLE+HL EA EK+K 
Sbjct: 209 KYHTISLKMSELQDTITGKDTLAAELRNQVDDLQYELNKVRARNDKLEHHLGEAIEKLKA 268

Query: 301 CQQMHTEDGKEKDVIKPEETM-SNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHRE 359
            QQ+H  D  EK   KP   + S+VSQ KL+DLQ++LEE +ELANNRLQELDKLH QHR+
Sbjct: 269 FQQIHGTD--EKGSNKPNTLVASSVSQTKLEDLQRELEETRELANNRLQELDKLHQQHRD 326

Query: 360 ALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQLPESVIVETTEYKCLQSA 419
           ALK+VEKLKMD                            IRQLPESVIVETTEYKCLQS 
Sbjct: 327 ALKEVEKLKMD----------------------------IRQLPESVIVETTEYKCLQSQ 358

Query: 420 YSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQ 479
           +SVLYNE+   KTQ  + +  L +SKN   R IEMME+EELM QKKLRGE +QLED L+Q
Sbjct: 359 FSVLYNESMQLKTQLDDARQQLQSSKNAHLRHIEMMESEELMAQKKLRGECIQLEDVLAQ 418

Query: 480 IRKEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAE 539
           +RKEYEMLRIEFE NLAANEQTGPINREMRHLITSLQNHN+Q+KGEV+RYKRKYKE S+E
Sbjct: 419 LRKEYEMLRIEFEQNLAANEQTGPINREMRHLITSLQNHNQQLKGEVHRYKRKYKEASSE 478

Query: 540 IQKVR 544
           I K++
Sbjct: 479 IPKLK 483

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|350402387\|ref\|XP_003486466.1\| PREDICTED: E3 ubiquitin-protein ligase Bre1-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|322796552\|gb\|EFZ19026.1\| hypothetical protein SINV_06436 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|383857052\|ref\|XP_003704020.1\| PREDICTED: E3 ubiquitin-protein ligase Bre1-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|345483701\|ref\|XP_001601663.2\| PREDICTED: E3 ubiquitin-protein ligase Bre1-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|307199111\|gb\|EFN79821.1\| E3 ubiquitin-protein ligase Bre1 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|242006288\|ref\|XP_002423984.1\| ubiquitin-protein ligase BRE1A, putative [Pediculus humanus corporis] gi\|212507266\|gb\|EEB11246.1\| ubiquitin-protein ligase BRE1A, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|307180966\|gb\|EFN68754.1\| E3 ubiquitin-protein ligase Bre1 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|380030127\|ref\|XP_003698707.1\| PREDICTED: E3 ubiquitin-protein ligase Bre1-like [Apis florea]	Back alignment and taxonomy information

>gi\|189240891\|ref\|XP_971710.2\| PREDICTED: similar to CG10542 CG10542-PA [Tribolium castaneum] gi\|270013497\|gb\|EFA09945.1\| hypothetical protein TcasGA2_TC012098 [Tribolium castaneum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		584
FB\|FBgn0086694		1044	Bre1 "Bre1" [Drosophila melano	0.705	0.394	0.440	1.1e-120
UNIPROTKB\|E1BCI2		1001	RNF40 "Uncharacterized protein	0.570	0.332	0.370	3.4e-98
UNIPROTKB\|F1RG77		1000	RNF40 "Uncharacterized protein	0.570	0.333	0.370	4.3e-98
MGI\|MGI:2142048		1001	Rnf40 "ring finger protein 40"	0.570	0.332	0.376	2e-97
UNIPROTKB\|E2R1L5		1001	RNF40 "Uncharacterized protein	0.570	0.332	0.370	2.5e-97
ZFIN\|ZDB-GENE-030131-6607		1004	rnf40 "ring finger protein 40"	0.258	0.150	0.635	1.6e-96
RGD\|628638		1002	Rnf40 "ring finger protein 40,	0.570	0.332	0.372	2.1e-96
UNIPROTKB\|O75150		1001	RNF40 "E3 ubiquitin-protein li	0.570	0.332	0.376	2.6e-53
UNIPROTKB\|Q5RAU7		1001	RNF40 "E3 ubiquitin-protein li	0.570	0.332	0.376	1.9e-52
UNIPROTKB\|Q4R7K7		1001	RNF40 "E3 ubiquitin-protein li	0.570	0.332	0.376	4e-52

FB\|FBgn0086694 Bre1 "Bre1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 764 (274.0 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
 Identities = 194/440 (44%), Positives = 267/440 (60%)

Query:   142 DENEATTSFLMQLSTWDKEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGE 201
             +ENE TTSFL QLSTWDKEELDEKLANRVQVSKRAVAKI+Q  DRL+QRNEKIT +LKG+
Sbjct:   122 NENEVTTSFLAQLSTWDKEELDEKLANRVQVSKRAVAKIVQVIDRLMQRNEKITHVLKGD 181

Query:   202 LNNSNGDPIPSL---DEAVREANIEIQTENRN-----LTEQNTKLHAKYHSISLKISELQ 253
                S G    +    +E  ++A+ + +T   +     L E   + H +  S + K+  L 
Sbjct:   182 SLASAGSGSGAGAGGEEEQQQASGDAETTTSSAGVHALEETLKQTHIEIMSENHKLQNLN 241

Query:   254 DAVNGK-ETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGK-E 311
              +++ K  T + +++   D      +K ++ N +L+N + E    +   +++H  + K E
Sbjct:   242 TSLHEKFHTMSLKMKEYQDA---HTAK-ETENAELKNQIDELQYDL---EKIHCRNDKLE 294

Query:   312 KDVIKPEETMSNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDW 371
               + +  E +    Q    D  K    AK                + + L++++K   ++
Sbjct:   295 NHLAEAIEKLKAYHQI-YGDPNKSTNSAKTPTTTGSGGATTS--VNSQLLEELQKELEEY 351

Query:   372 EVTFNNEISWL--VWSVNPTSL--TTQLPRQIRQLPESVIVETTEYKCLQSAYSVLYNEN 427
                 NN +  L  + + +  +L    +L   IRQLPESVIVETTEYKCLQS +SVLYNE+
Sbjct:   352 RELANNRLQELDKLHATHRETLKEVEKLKMDIRQLPESVIVETTEYKCLQSQFSVLYNES 411

Query:   428 QLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIRKEYEML 487
                KT   E ++ L  SKN   RQIE+ME+EEL+ QKK+R EM+Q+ED L+ IRKEYE L
Sbjct:   412 MQIKTMLDETRNQLQTSKNQHLRQIEVMESEELIAQKKVRSEMIQMEDVLALIRKEYETL 471

Query:   488 RIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVR--I 545
             RIEFE N+AANEQT PINREMRHLITSLQNHN Q+KGEV RYKRKYK+TS +  K+R  +
Sbjct:   472 RIEFEQNMAANEQTAPINREMRHLITSLQNHNGQLKGEVQRYKRKYKDTSTDNLKLRQEL 531

Query:   546 SERSPWPSGYRLHA--GGSG 563
             ++      G +L A  G +G
Sbjct:   532 ADALATLEGNKLQAATGAAG 551

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016570 "histone modification" evidence=IMP

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB\|E1BCI2 RNF40 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RG77 RNF40 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:2142048 Rnf40 "ring finger protein 40" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R1L5 RNF40 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-6607 rnf40 "ring finger protein 40" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|628638 Rnf40 "ring finger protein 40, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|O75150 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5RAU7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4R7K7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Macaca fascicularis (taxid:9541)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VRP9	BRE1_DROME	6, ., 3, ., 2, ., -	0.5627	0.8698	0.4865	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		584
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG5022		1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	1e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
pfam08317		321	pfam08317, Spc7, Spc7 kinetochore protein	2e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.003
PHA02562		562	PHA02562, 46, endonuclease subunit; Provisional	0.004

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

 Score = 59.3 bits (144), Expect = 4e-09
 Identities = 62/340 (18%), Positives = 135/340 (39%), Gaps = 34/340 (10%)

Query: 39  DIKVLKFQNKKLAQRIEQKNQVEHELRSRIEQLEKRQTQDDAVLNVVNRYWNQLNEDIRI 98
            ++ L+ + K L   +     +  ELR ++E+LE++  +    L  +     QL   +  
Sbjct: 682 QLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEE 741

Query: 99  LLQRFDAETADESESKSQAALRALDVCAPPAYGNTNVMCLAITDENEATTSFLMQLSTWD 158
           L +    E  +E   + Q  L                  L   +E  A     ++     
Sbjct: 742 LEEE--LEELEEELEELQERL------------EELEEELESLEEALAKLKEEIEELEEK 787

Query: 159 KEELDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVR 218
           ++ L E+L   ++       + + A +R ++  E+    L+ E+          L+E + 
Sbjct: 788 RQALQEELEE-LEEELEEAERRLDALERELESLEQRRERLEQEIEE--------LEEEIE 838

Query: 219 EANIEIQTENRNLTEQNTK---LHAKYHSISLKISELQDAVNGKETEAAELRNQIDDLQY 275
           E   ++      L E   +   L  +   +  +  EL+D +   E E  EL  ++ +L+ 
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898

Query: 276 ELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETMSNVSQKKLDDLQKD 335
           EL++++   +KL   L E   K++  +    E   E+   + E+T+    +++++ L+++
Sbjct: 899 ELAELKEEIEKLRERLEELEAKLERLEVELPELE-EELEEEYEDTLETELEREIERLEEE 957

Query: 336 LEE-------AKELANNRLQELDKLHLQHREALKDVEKLK 368
           +E        A E      +  ++L  Q  +  +  EKL 
Sbjct: 958 IEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997

Length = 1163

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|219791 pfam08317, Spc7, Spc7 kinetochore protein	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|222878 PHA02562, 46, endonuclease subunit; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		584
KOG0978\|consensus		698		100.0
KOG0161\|consensus		1930		98.38
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.33
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.25
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.13
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.02
PRK11637		428	AmiB activator; Provisional	97.89
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	97.89
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	97.88
PRK02224		880	chromosome segregation protein; Provisional	97.84
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.83
KOG0161\|consensus		1930		97.82
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	97.82
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	97.8
COG4942		420	Membrane-bound metallopeptidase [Cell division and	97.76
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	97.7
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.69
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	97.58
KOG0976\|consensus		1265		97.54
PF14662		193	CCDC155: Coiled-coil region of CCDC155	97.51
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	97.48
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.44
KOG0977\|consensus		546		97.42
PRK11637		428	AmiB activator; Provisional	97.41
KOG4643\|consensus		1195		97.4
PRK03918		880	chromosome segregation protein; Provisional	97.4
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	97.34
KOG0996\|consensus		1293		97.33
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.29
KOG0250\|consensus		1074		97.27
KOG0977\|consensus		546		97.2
PRK02224		880	chromosome segregation protein; Provisional	97.13
KOG0996\|consensus		1293		97.12
KOG0995\|consensus		581		97.09
KOG0976\|consensus		1265		97.07
PF00038		312	Filament: Intermediate filament protein; InterPro:	96.95
KOG0612\|consensus		1317		96.91
KOG0999\|consensus		772		96.88
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.85
KOG0971\|consensus		1243		96.77
KOG0933\|consensus		1174		96.72
KOG0978\|consensus		698		96.65
KOG4643\|consensus		1195		96.53
PRK04778		569	septation ring formation regulator EzrA; Provision	96.52
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	96.48
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.44
KOG4674\|consensus		1822		96.37
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	96.29
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.18
KOG0994\|consensus		1758		96.17
KOG0971\|consensus		1243		96.15
KOG1029\|consensus		1118		96.14
KOG0995\|consensus		581		96.1
KOG0963\|consensus		629		96.09
PHA02562		562	46 endonuclease subunit; Provisional	96.06
KOG1853\|consensus		333		96.04
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	95.99
KOG4674\|consensus		1822		95.9
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.9
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	95.89
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	95.88
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	95.85
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.75
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.74
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	95.68
KOG0250\|consensus		1074		95.6
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.57
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.56
PRK04863		1486	mukB cell division protein MukB; Provisional	95.38
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.29
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.28
PRK09039		343	hypothetical protein; Validated	95.22
COG5185		622	HEC1 Protein involved in chromosome segregation, i	95.07
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	94.96
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.88
PHA02562		562	46 endonuclease subunit; Provisional	94.77
PRK03918		880	chromosome segregation protein; Provisional	94.74
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	94.62
PRK04778		569	septation ring formation regulator EzrA; Provision	94.6
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	94.53
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	94.5
KOG0999\|consensus		772		94.42
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.41
KOG0994\|consensus		1758		94.39
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.25
KOG0980\|consensus		980		94.11
KOG4809\|consensus		654		94.03
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	93.99
KOG2129\|consensus		552		93.94
PF13514		1111	AAA_27: AAA domain	93.91
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.9
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.78
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	93.71
PF06785		401	UPF0242: Uncharacterised protein family (UPF0242);	93.57
KOG4360\|consensus		596		93.51
PF13870		177	DUF4201: Domain of unknown function (DUF4201)	93.49
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.4
COG4942		420	Membrane-bound metallopeptidase [Cell division and	93.09
PRK09039		343	hypothetical protein; Validated	92.99
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	92.96
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	92.94
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	92.89
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	92.65
KOG0964\|consensus		1200		92.62
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	92.57
PRK04863		1486	mukB cell division protein MukB; Provisional	92.44
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	92.38
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	92.34
PRK01156		895	chromosome segregation protein; Provisional	92.3
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.28
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	92.28
KOG0946\|consensus		970		92.22
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.14
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	92.03
PF10186		302	Atg14: UV radiation resistance protein and autopha	92.0
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	91.95
KOG0933\|consensus		1174		91.77
KOG4673\|consensus		961		91.74
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	91.72
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	91.6
PF08172		248	CASP_C: CASP C terminal; InterPro: IPR012955 This	91.51
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.5
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	91.41
PF13514		1111	AAA_27: AAA domain	91.41
PF10481		307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	91.35
PF07106		169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.26
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	91.06
PF14662		193	CCDC155: Coiled-coil region of CCDC155	90.97
PRK10929		1109	putative mechanosensitive channel protein; Provisi	90.96
KOG2129\|consensus		552		90.87
PRK01156		895	chromosome segregation protein; Provisional	90.85
TIGR01000		457	bacteriocin_acc bacteriocin secretion accessory pr	90.79
KOG4687\|consensus		389		90.64
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.39
KOG4673\|consensus		961		90.15
PRK10884		206	SH3 domain-containing protein; Provisional	90.1
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	89.89
KOG0612\|consensus		1317		89.84
PF15397		258	DUF4618: Domain of unknown function (DUF4618)	89.83
PF09486		158	HrpB7: Bacterial type III secretion protein (HrpB7	89.74
KOG1029\|consensus		1118		89.44
KOG0804\|consensus		493		89.2
PF10498		359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.96
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	88.71
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	88.52
KOG0979\|consensus		1072		88.45
TIGR03017		444	EpsF chain length determinant protein EpsF. Sequen	88.38
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	88.26
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	88.22
PRK10929		1109	putative mechanosensitive channel protein; Provisi	87.39
PF04012		221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	87.36
PF10234		267	Cluap1: Clusterin-associated protein-1; InterPro:	86.5
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	86.23
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	85.89
KOG1853\|consensus		333		85.74
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	85.72
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	85.59
PF04012		221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	85.27
PRK11281		1113	hypothetical protein; Provisional	84.76
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	84.43
PF15294		278	Leu_zip: Leucine zipper	84.43
COG0497		557	RecN ATPase involved in DNA repair [DNA replicatio	84.43
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	84.35
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	84.13
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	83.89
TIGR01010		362	BexC_CtrB_KpsE polysaccharide export inner-membran	83.63
PRK00295		68	hypothetical protein; Provisional	83.49
KOG2991\|consensus		330		83.38
PF10146		230	zf-C4H2: Zinc finger-containing protein ; InterPro	83.3
COG4026		290	Uncharacterized protein containing TOPRIM domain,	83.08
PRK02793		72	phi X174 lysis protein; Provisional	82.91
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	82.44
PF04156		191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	82.29
KOG0018\|consensus		1141		81.96
PF06818		202	Fez1: Fez1; InterPro: IPR009638 This family repres	81.95
cd07666		243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	81.91
PF09738		302	DUF2051: Double stranded RNA binding protein (DUF2	81.68
KOG4005\|consensus		292		81.6
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	81.56
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	81.08
PRK00846		77	hypothetical protein; Provisional	80.92
PF10267		395	Tmemb_cc2: Predicted transmembrane and coiled-coil	80.4
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.39
PF04102		69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	80.12

>KOG0978\|consensus	Back alignment and domain information

Probab=100.00  E-value=6.4e-32  Score=300.73  Aligned_cols=302  Identities=39%  Similarity=0.582  Sum_probs=275.4

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8072         162 LDEKLANRVQVSKRAVAKIIQAFDRLVQRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNTKLHAK  241 (584)
Q Consensus       162 ~e~~L~~R~~~tk~~v~~lv~~~d~~~~~~e~l~~~l~~~~~~~~~~~~~d~~~~l~~~n~~L~~E~~~Lq~~~~~L~~k  241 (584)
                      ++..++.|+.+++++++.++..+|.+....+.++..+.+            +.++++..++.|..++.+||.+++.||.+
T Consensus         3 ~~~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~------------~~e~l~~~~~~L~~e~e~Lq~~~~~~~~~   70 (698)
T KOG0978|consen    3 VEEPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNR------------VEEALTVLFDELAEENEKLQNLADHLQEK   70 (698)
T ss_pred             chhhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999988887766            67889999999999999999999999999


Q ss_pred             HHHhHHHHHHhhhhhhhchHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCC
Q psy8072         242 YHSISLKISELQDAVNGKETEAAELRNQIDDLQYELSKVQSRNDKLENHLLEATEKVKLCQQMHTEDGKEKDVIKPEETM  321 (584)
Q Consensus       242 hk~ls~e~~~l~d~~~~~ese~~eL~~qLee~~~eL~k~~rr~~KL~~~la~ale~~~s~~~~~~~~~~~~~~~~p~~g~  321 (584)
                      |+.++.++.++.|+++..++++.++..++|+++|+++++++|.++|+.|++++++.+++          ++++++..+|.
T Consensus        71 ~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t----------~~~~~~~~~~~  140 (698)
T KOG0978|consen   71 HATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNT----------YGNGNGSLSGT  140 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----------CCCcccccCcc
Confidence            99999999999999999999999999999999999999999999999999999953332          11122223466


Q ss_pred             ccccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhhhhhccCCCCcccccchhhcc
Q psy8072         322 SNVSQKKLDDLQKDLEEAKELANNRLQELDKLHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTTQLPRQIRQ  401 (584)
Q Consensus       322 ~~~~~~k~eeL~~eleE~k~LA~~Rl~ELe~L~~e~~~l~~e~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  401 (584)
                      ++++..+++++.+.++|++.+|+.|+.+|++++..+..+..++++++++                            ++.
T Consensus       141 ~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~----------------------------l~~  192 (698)
T KOG0978|consen  141 ITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVE----------------------------LRS  192 (698)
T ss_pred             cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHH
Confidence            7788889999999999999999999999999999999999999999999                            899


Q ss_pred             CChhhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8072         402 LPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQEFQSHLSASKNNQQRQIEMMETEELMVQKKLRGEMMQLEDALSQIR  481 (584)
Q Consensus       402 l~ee~I~~S~~Yk~LqsQ~s~l~~e~~~lk~qL~e~r~~Lq~~R~~~~~qie~mE~~E~~~q~~l~s~v~qlE~~LarvR  481 (584)
                      ++..++..|.+|+|++      ||+..++++                      |+.+|+...+.    ++++++.++.|+
T Consensus       193 ~~~~~~~~~~e~~~~~------~NE~l~~~~----------------------~~~~e~~~~~~----~~~lee~~~~~~  240 (698)
T KOG0978|consen  193 LKEKVRSETFELRCLQ------YNEELQRKT----------------------MESDEAINSKK----VIKLEEKLAQCV  240 (698)
T ss_pred             hhHHHHHHHHHHHHHH------hhhhccccc----------------------chhhhhhccch----HHHHHHHHHHHH
Confidence            9999999999999999      777776655                      67888876664    899999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcC
Q psy8072         482 KEYEMLRIEFETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQKVRISERS  549 (584)
Q Consensus       482 ~ere~L~~E~eq~~aa~Eq~g~i~~Emr~LisSlq~~i~~LksEv~R~K~k~kea~~e~~~lr~~~~s  549 (584)
                      ++|+++++++++++++|++.++|++||++|++++++++++|++    |.++|+++++++.+||++..|
T Consensus       241 ~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~----~~~~~k~t~~~~~~lr~~~~s  304 (698)
T KOG0978|consen  241 KEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKE----YERELKDTESDNLKLRKQHSS  304 (698)
T ss_pred             HHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHhcccchHHHHHHHHHH
Confidence            9999999999999999999889999999999999999999999    666779999999999999988

>KOG0161\|consensus	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0161\|consensus	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG0976\|consensus	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0977\|consensus	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG4643\|consensus	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>KOG0996\|consensus	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>KOG0250\|consensus	Back alignment and domain information

>KOG0977\|consensus	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0996\|consensus	Back alignment and domain information

>KOG0995\|consensus	Back alignment and domain information

>KOG0976\|consensus	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>KOG0612\|consensus	Back alignment and domain information

>KOG0999\|consensus	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>KOG0971\|consensus	Back alignment and domain information

>KOG0933\|consensus	Back alignment and domain information

>KOG0978\|consensus	Back alignment and domain information

>KOG4643\|consensus	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>KOG4674\|consensus	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0994\|consensus	Back alignment and domain information

>KOG0971\|consensus	Back alignment and domain information

>KOG1029\|consensus	Back alignment and domain information

>KOG0995\|consensus	Back alignment and domain information

>KOG0963\|consensus	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG1853\|consensus	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>KOG4674\|consensus	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>KOG0250\|consensus	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>KOG0999\|consensus	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>KOG0994\|consensus	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>KOG0980\|consensus	Back alignment and domain information

>KOG4809\|consensus	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>KOG2129\|consensus	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function	Back alignment and domain information

>KOG4360\|consensus	Back alignment and domain information

>PF13870 DUF4201: Domain of unknown function (DUF4201)	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>KOG0964\|consensus	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0946\|consensus	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>KOG0933\|consensus	Back alignment and domain information

>KOG4673\|consensus	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []	Back alignment and domain information

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>KOG2129\|consensus	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein	Back alignment and domain information

>KOG4687\|consensus	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>KOG4673\|consensus	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>KOG0612\|consensus	Back alignment and domain information

>PF15397 DUF4618: Domain of unknown function (DUF4618)	Back alignment and domain information

>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia	Back alignment and domain information

>KOG1029\|consensus	Back alignment and domain information

>KOG0804\|consensus	Back alignment and domain information

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0979\|consensus	Back alignment and domain information

>TIGR03017 EpsF chain length determinant protein EpsF	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription	Back alignment and domain information

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>KOG1853\|consensus	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF15294 Leu_zip: Leucine zipper	Back alignment and domain information

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family	Back alignment and domain information

>PRK00295 hypothetical protein; Provisional	Back alignment and domain information

>KOG2991\|consensus	Back alignment and domain information

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]	Back alignment and domain information

>PRK02793 phi X174 lysis protein; Provisional	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion	Back alignment and domain information

>KOG0018\|consensus	Back alignment and domain information

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein	Back alignment and domain information

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7	Back alignment and domain information

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA	Back alignment and domain information

>KOG4005\|consensus	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PRK00846 hypothetical protein; Provisional	Back alignment and domain information

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans	Back alignment and domain information

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		584
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-14
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	9e-08
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	9e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 92.2 bits (228), Expect = 2e-19
 Identities = 86/651 (13%), Positives = 181/651 (27%), Gaps = 202/651 (31%)

Query: 3   KRGVDCEDASSSGQPPVKKVQFEPIRIGPISTLEEMD--IKVLKFQNKKLAQR-IEQKNQ 59
               DC+D     +  + K + + I +     +         L  + +++ Q+ +E+  +
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 60  VEHE-LRSRIEQLEKRQTQDDAVLNV--VNRYWN-------------QLNEDIRILLQRF 103
           + ++ L S I + E+RQ      + +   +R +N             Q    +R  L   
Sbjct: 89  INYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE- 146

Query: 104 DAETADESES-----------KS---QAALRALDV-CAPP------AYGNTNV------- 135
                                K+        +  V C            N N        
Sbjct: 147 -----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 136 ---MCLAITDENEATTSFLMQLSTWDKEELDEKLANRVQVSKRAV-----------AKII 181
              +   I D N  + S            +  +L  R+  SK              AK  
Sbjct: 202 LQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 182 QAFD---R-LV-QRNEKITMILKGELNNSNGDPIPSLDEAVREANIEIQTENRNLTEQNT 236
            AF+   + L+  R +++T  L                      +I +   +  LT    
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAA----------------TTTHISLDHHSMTLTPDEV 303

Query: 237 K-LHAKYHSISLKISEL-QDAVNGKETE----AAELRNQIDDLQYELSKVQSRNDKLENH 290
           K L  KY  +  +  +L ++ +          A  +R+ +              DKL   
Sbjct: 304 KSLLLKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKL--- 355

Query: 291 LLEATEKVKLC-QQMHTEDGKE---------KDVIKPEETMSNV-SQKKLDDLQKDLEEA 339
               T  ++     +   + ++              P   +S +       D+   + + 
Sbjct: 356 ----TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK- 410

Query: 340 KELANNRLQELDK------LHLQHREALKDVEKLKMDWEVTFNNEISWLVWSVNPTSLTT 393
             L    L E         +   + E    +E                            
Sbjct: 411 --LHKYSLVEKQPKESTISIPSIYLELKVKLENEY------------------------- 443

Query: 394 QLPRQIRQLPESVIVETTEYKCLQSAYSVLYNENQLAKTQAQE-FQSHLS--ASKNNQQR 450
            L R I        V+   Y   ++     ++ + L      + F SH+           
Sbjct: 444 ALHRSI--------VD--HYNIPKT-----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 451 QIEMMETEEL---MVQKKLR------GEMMQLEDALSQIRK----------EYEMLRIEF 491
           ++ +     L    +++K+R           + + L Q++           +YE L    
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 492 ETNLAANEQTGPINREMRHLITSLQNHNKQIKGEVNRYKRKYKETSAEIQK 542
              L   E+    ++    L  +L   ++ I          ++E   ++Q+
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAI----------FEEAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		584
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.58
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.75
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.7
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	96.6
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	96.59
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	96.37
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	96.14
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	95.42
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	95.4
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.7
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.1
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.74
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.31
3s4r_A		93	Vimentin; alpha-helix, cytoskeleton, intermediate	90.18
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	89.68
3trt_A		77	Vimentin; cytoskeleton, intermediate filament, alp	89.58
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	89.34
3q8t_A		96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	88.97
3trt_A		77	Vimentin; cytoskeleton, intermediate filament, alp	87.02
2v4h_A		110	NF-kappa-B essential modulator; transcription, met	85.15
3ghg_A		562	Fibrinogen alpha chain; triple-stranded coiled coi	85.06
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	84.52
3tnu_B		129	Keratin, type II cytoskeletal 5; coiled-coil, stru	84.45
3hnw_A		138	Uncharacterized protein; coiled-coil, structural g	83.76
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	83.53
1ic2_A		81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.43
3tnu_A		131	Keratin, type I cytoskeletal 14; coiled-coil, stru	83.18
1ic2_A		81	Tropomyosin alpha chain, skeletal muscle; alpha-he	82.98
3mq7_A		121	Bone marrow stromal antigen 2; HIV, antiviral prot	81.45
3tnu_B		129	Keratin, type II cytoskeletal 5; coiled-coil, stru	81.35

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

Probab=98.58  E-value=0.00056  Score=65.66  Aligned_cols=22  Identities=5%  Similarity=0.069  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy8072         470 MMQLEDALSQIRKEYEMLRIEF  491 (584)
Q Consensus       470 v~qlE~~LarvR~ere~L~~E~  491 (584)
                      +..++..+..++.+++.+...+
T Consensus       218 ~~~~~~~l~~l~~~~~~~~~~~  239 (284)
T 1c1g_A          218 EDKYEEEIKVLSDKLKEAETRA  239 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444333333

PyMOL of 1c1g

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}	Back alignment and structure

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*	Back alignment and structure

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}	Back alignment and structure

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1	Back alignment and structure

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1	Back alignment and structure

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A	Back alignment and structure

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00