Psyllid ID: psy8253

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR
Secondary Structure (PSIPRED)
ccccccccccEEEEEEccccccccccEEEEEcccEEEEEEccccccEEEEEEEEcccccccEEEEEEEEccccccEEEEEccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEccccccccccEEEEEcccEEEEEEEcccccEEEEEEEEcccccccEEEEEEEEcccccccEEEEEccccEEc
Coil and Loop (DISEMBL)
cshkedhgqplfgaqfnhllkddqprifatvgsnrvsiyecpdggsikllqcyadpdieenfYTCAWsmdlesgrpllavagsravir
Flexible Loop (DISEMBL)
cshkedhgqpLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLesgrpllavagsravir
Low Complexity Region (SEG)
CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR
Disordered region (IsUnstruct)
***********FGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV********
Disordered Region (DISOPRED)
*****DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI*
Disordered Region (DISEMBL)
********QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR
Disordered Region (DISPRO)
C****DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
O16023	428	Polycomb protein esc OS=M	N/A	N/A	1.0	0.205	0.636	2e-28
Q566T0	443	Polycomb protein eed OS=D	yes	N/A	0.988	0.196	0.655	6e-28
Q5ZKH3	446	Polycomb protein EED OS=G	yes	N/A	0.988	0.195	0.643	1e-27
Q24338	425	Polycomb protein esc OS=D	yes	N/A	0.965	0.2	0.623	3e-27
Q3SZ25	441	Polycomb protein EED OS=B	yes	N/A	0.988	0.197	0.632	5e-27
Q921E6	441	Polycomb protein EED OS=M	yes	N/A	0.988	0.197	0.632	5e-27
O75530	441	Polycomb protein EED OS=H	yes	N/A	0.988	0.197	0.632	5e-27
Q28DT7	438	Polycomb protein eed OS=X	yes	N/A	0.988	0.198	0.632	7e-27
Q6AZS2	438	Polycomb protein eed-B OS	N/A	N/A	0.988	0.198	0.632	7e-27
Q8UUP2	438	Polycomb protein eed-A OS	N/A	N/A	0.988	0.198	0.632	7e-27

>sp|O16023|ESC_MUSDO Polycomb protein esc OS=Musca domestica GN=esc PE=3 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 65/88 (73%)

Query: 1   CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEE 60
           C  KEDHGQ +FG  FNHLL  DQ  +FAT GSNR +IYECP  G +KL+ CYADPD +E
Sbjct: 67  CHLKEDHGQAIFGVSFNHLLGKDQSMVFATAGSNRCNIYECPRKGGLKLIMCYADPDPDE 126

Query: 61  NFYTCAWSMDLESGRPLLAVAGSRAVIR 88
            FYTC+WS DL++  PLLA AG R VIR
Sbjct: 127 VFYTCSWSYDLKTSAPLLATAGYRGVIR 154

Polycomb group (PcG) protein. In contrast to other PcG protein, it is specifically required during the first 6 hours of embryogenesis to establish PcG silencing. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via a methylation of histones, rendering chromatin heritably changed in its expressibility. Component of the Esc/E(z) complex, which methylates 'Lys-9' and 'Lys-27' residues of histone H3. The Esc/E(z) complex is necessary but not sufficient to recruit a functional PcG repressive complex that represses target genes, suggesting that the recruitment of the distinct PRC1 complex is also required to allow a subsequent repression.
Musca domestica (taxid: 7370)

>sp|Q566T0|EED_DANRE Polycomb protein eed OS=Danio rerio GN=eed PE=2 SV=2

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 65/87 (74%)

Query: 2   SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
           S KEDHGQPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 89  SLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 148

Query: 62  FYTCAWSMDLESGRPLLAVAGSRAVIR 88
           FYTCAW+ D  S  PLLAVAGSR +IR
Sbjct: 149 FYTCAWTFDCSSSHPLLAVAGSRGIIR 175

Polycomb group (PcG) protein. Component of the prc2/eed-ezh2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene.

Danio rerio (taxid: 7955)

>sp|Q5ZKH3|EED_CHICK Polycomb protein EED OS=Gallus gallus GN=EED PE=2 SV=1

 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 65/87 (74%)

Query: 2   SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
           S KEDHGQPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 92  SLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 151

Query: 62  FYTCAWSMDLESGRPLLAVAGSRAVIR 88
           FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 152 FYTCAWTYDSNTSHPLLAVAGSRGIIR 178

Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene.

Gallus gallus (taxid: 9031)

>sp|Q24338|ESC_DROME Polycomb protein esc OS=Drosophila melanogaster GN=esc PE=1 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 65/85 (76%)

Query: 4   KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFY 63
           KE+HG  +FG  FN LL  D+P++FAT GSNRV++YECP  G ++LL CYADPD +E FY
Sbjct: 69  KENHGANIFGVAFNTLLGKDEPQVFATAGSNRVTVYECPRQGGMQLLHCYADPDPDEVFY 128

Query: 64  TCAWSMDLESGRPLLAVAGSRAVIR 88
           TCAWS DL++  PLLA AG R VIR
Sbjct: 129 TCAWSYDLKTSSPLLAAAGYRGVIR 153

Polycomb group (PcG) protein. While PcG proteins are generally required to maintain the transcriptionally repressive state of homeotic genes throughout development, this protein is specifically required during the first 6 hours of embryogenesis to establish the repressed state. Component of the Esc/E(z) complex, which methylates 'Lys-9' and 'Lys-27' residues of histone H3, leading to transcriptional repression of the affected target gene. The Esc/E(z) complex is necessary but not sufficient for the repression of homeotic target genes, suggesting that the recruitment of the distinct PRC1 complex is also required.

Drosophila melanogaster (taxid: 7227)

>sp|Q3SZ25|EED_BOVIN Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=1

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 2   SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
           S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 87  SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 146

Query: 62  FYTCAWSMDLESGRPLLAVAGSRAVIR 88
           FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 147 FYTCAWTYDSNTSHPLLAVAGSRGIIR 173

Polycomb group (PcG) protein (By similarity). Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene (By similarity). The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems.

Bos taurus (taxid: 9913)

>sp|Q921E6|EED_MOUSE Polycomb protein EED OS=Mus musculus GN=Eed PE=1 SV=1

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 2   SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
           S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 87  SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 146

Query: 62  FYTCAWSMDLESGRPLLAVAGSRAVIR 88
           FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 147 FYTCAWTYDSNTSHPLLAVAGSRGIIR 173

Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene (By similarity). The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems (By similarity). Genes repressed by the PRC2/EED-EZH2 complex include HOXA7, HOXB6 and HOXC8. Plays a role in X chromosome inactivation (XCI), in which one of the two X chromosomes in female mammals is transcriptionally silenced to equalize X-linked gene dosage with XY males. Required for stable maintenance of XCI in both embryonic and extraembryonic tissues. May prevent transcriptional activation of facultative heterochromatin during differentiation. Required for development of secondary trophoblast giant cells during placental development. May regulate hippocampal synaptic plasticity in the developing brain.

Mus musculus (taxid: 10090)

>sp|O75530|EED_HUMAN Polycomb protein EED OS=Homo sapiens GN=EED PE=1 SV=2

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 2   SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
           S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 87  SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 146

Query: 62  FYTCAWSMDLESGRPLLAVAGSRAVIR 88
           FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 147 FYTCAWTYDSNTSHPLLAVAGSRGIIR 173

Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems. Genes repressed by the PRC2/EED-EZH2 complex include HOXC8, HOXA9, MYT1 and CDKN2A.

Homo sapiens (taxid: 9606)

>sp|Q28DT7|EED_XENTR Polycomb protein eed OS=Xenopus tropicalis GN=eed PE=2 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 2   SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
           S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 84  SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGEIRLLQSYVDADADEN 143

Query: 62  FYTCAWSMDLESGRPLLAVAGSRAVIR 88
           FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 144 FYTCAWTYDSNTSHPLLAVAGSRGIIR 170

Polycomb group (PcG) protein. Component of the prc2/eed-ezh2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene.

Xenopus tropicalis (taxid: 8364)

>sp|Q6AZS2|EEDB_XENLA Polycomb protein eed-B OS=Xenopus laevis GN=eed-b PE=1 SV=2

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 2   SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
           S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 84  SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGDIRLLQSYVDADADEN 143

Query: 62  FYTCAWSMDLESGRPLLAVAGSRAVIR 88
           FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 144 FYTCAWTYDSNTSHPLLAVAGSRGIIR 170

Polycomb group (PcG) protein. Component of the prc2/eed-ezh2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene (By similarity). May play a role in neural induction.

Xenopus laevis (taxid: 8355)

>sp|Q8UUP2|EEDA_XENLA Polycomb protein eed-A OS=Xenopus laevis GN=eed-a PE=1 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query: 2   SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
           S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 84  SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGDIRLLQSYVDADADEN 143

Query: 62  FYTCAWSMDLESGRPLLAVAGSRAVIR 88
           FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 144 FYTCAWTYDSNTSHPLLAVAGSRGIIR 170

Polycomb group (PcG) protein. Component of the prc2/eed-ezh2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
332373884	427	unknown [Dendroctonus ponderosae]	1.0	0.206	0.795	7e-36
2352418	437	extra sex combs [Schistocerca americana]	0.988	0.199	0.770	2e-34
321462210	426	hypothetical protein DAPPUDRAFT_307962 [	0.965	0.199	0.752	2e-34
340710350	427	PREDICTED: polycomb protein eed-A-like [	0.988	0.203	0.784	6e-34
91078148	423	PREDICTED: similar to extra sex combs [T	1.0	0.208	0.727	6e-34
270002345	430	hypothetical protein TcasGA2_TC001356 [T	1.0	0.204	0.727	7e-34
383850822	427	PREDICTED: polycomb protein eed-A-like [	0.988	0.203	0.772	2e-33
350415901	427	PREDICTED: polycomb protein eed-A-like [	0.988	0.203	0.761	4e-33
66559864	427	PREDICTED: polycomb protein eed-A-like [	0.988	0.203	0.761	6e-33
380014722	427	PREDICTED: polycomb protein eed-A-like [	0.988	0.203	0.761	6e-33

>gi|332373884|gb|AEE62083.1| unknown [Dendroctonus ponderosae]

 Score =  154 bits (388), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 78/88 (88%)

Query: 1   CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEE 60
           CS KEDHGQPLFGAQFNH LK+ QP IFA VGSNRV+IYECP+ G IKL+QCYADPD++E
Sbjct: 74  CSIKEDHGQPLFGAQFNHHLKEGQPLIFAAVGSNRVTIYECPEAGGIKLVQCYADPDLDE 133

Query: 61  NFYTCAWSMDLESGRPLLAVAGSRAVIR 88
           NFYTCAWS D ESG+PLLAVAG+R VIR
Sbjct: 134 NFYTCAWSYDEESGKPLLAVAGARGVIR 161

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2352418|gb|AAC05332.1| extra sex combs [Schistocerca americana]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 77/87 (88%)

Query: 2   SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
           S KEDHGQPLFGAQFNH LK+ QP IFA VGSNRV++YECP+G  IKLLQCYADPD++EN
Sbjct: 84  SVKEDHGQPLFGAQFNHHLKEGQPLIFAAVGSNRVTVYECPEGSGIKLLQCYADPDVDEN 143

Query: 62  FYTCAWSMDLESGRPLLAVAGSRAVIR 88
           +YTCAWS + ESG+PLLAVAGSR +IR
Sbjct: 144 YYTCAWSYEEESGKPLLAVAGSRGIIR 170

Source: Schistocerca americana

Species: Schistocerca americana

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321462210|gb|EFX73235.1| hypothetical protein DAPPUDRAFT_307962 [Daphnia pulex]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 75/85 (88%)

Query: 4   KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFY 63
           KEDHGQPLFG QFNHLL+D QP +FATVGS+R+S+YECPD G IKLLQ YADPD+EENFY
Sbjct: 75  KEDHGQPLFGVQFNHLLRDGQPLVFATVGSHRISVYECPDTGGIKLLQTYADPDLEENFY 134

Query: 64  TCAWSMDLESGRPLLAVAGSRAVIR 88
           TCAWS D E+G+P+LA AGSR ++R
Sbjct: 135 TCAWSYDEETGKPILAAAGSRGIVR 159

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710350|ref|XP_003393755.1| PREDICTED: polycomb protein eed-A-like [Bombus terrestris]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/88 (78%), Positives = 77/88 (87%), Gaps = 1/88 (1%)

Query: 1   CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEE 60
           CS KEDHGQPLFG QFNH LK+ +P IFA+VGSNRVSIYECPDGGSI+L QCYADPD EE
Sbjct: 75  CSVKEDHGQPLFGVQFNHHLKEGEPLIFASVGSNRVSIYECPDGGSIRLRQCYADPDPEE 134

Query: 61  NFYTCAWSMDLESGRPLLAVAGSRAVIR 88
           NFYTC W+ D +SG+PLLAVAGSR V+R
Sbjct: 135 NFYTCTWTYD-DSGKPLLAVAGSRGVVR 161

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078148|ref|XP_973780.1| PREDICTED: similar to extra sex combs [Tribolium castaneum]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 77/88 (87%)

Query: 1   CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEE 60
           C+ KEDHGQPLFG QFNH LK+ QP IFA VGSNRV+IYECP+G  IKLLQC+ADPD++E
Sbjct: 70  CNIKEDHGQPLFGTQFNHHLKEGQPLIFAAVGSNRVTIYECPEGNGIKLLQCFADPDLDE 129

Query: 61  NFYTCAWSMDLESGRPLLAVAGSRAVIR 88
           N+YTCAW+ D E+G+PLLAVAGSR ++R
Sbjct: 130 NYYTCAWTYDEETGKPLLAVAGSRGIVR 157

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002345|gb|EEZ98792.1| hypothetical protein TcasGA2_TC001356 [Tribolium castaneum]

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 77/88 (87%)

Query: 1   CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEE 60
           C+ KEDHGQPLFG QFNH LK+ QP IFA VGSNRV+IYECP+G  IKLLQC+ADPD++E
Sbjct: 77  CNIKEDHGQPLFGTQFNHHLKEGQPLIFAAVGSNRVTIYECPEGNGIKLLQCFADPDLDE 136

Query: 61  NFYTCAWSMDLESGRPLLAVAGSRAVIR 88
           N+YTCAW+ D E+G+PLLAVAGSR ++R
Sbjct: 137 NYYTCAWTYDEETGKPLLAVAGSRGIVR 164

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850822|ref|XP_003700973.1| PREDICTED: polycomb protein eed-A-like [Megachile rotundata]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/88 (77%), Positives = 77/88 (87%), Gaps = 1/88 (1%)

Query: 1   CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEE 60
           CS KEDHGQPLFG QFNH LK+ +P IFA+VGSNRVSIYECP+GG+I+L QCYADPD EE
Sbjct: 75  CSVKEDHGQPLFGVQFNHHLKEGEPLIFASVGSNRVSIYECPEGGNIRLRQCYADPDPEE 134

Query: 61  NFYTCAWSMDLESGRPLLAVAGSRAVIR 88
           NFYTC W+ D +SG+PLLAVAGSR VIR
Sbjct: 135 NFYTCTWTYD-DSGKPLLAVAGSRGVIR 161

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415901|ref|XP_003490784.1| PREDICTED: polycomb protein eed-A-like [Bombus impatiens]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 77/88 (87%), Gaps = 1/88 (1%)

Query: 1   CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEE 60
           CS KEDHGQPLFG QFNH LK+ +P IFA+VGSNRVSIYECP+GG+I+L QCYADPD EE
Sbjct: 75  CSVKEDHGQPLFGVQFNHHLKEGEPLIFASVGSNRVSIYECPEGGNIRLRQCYADPDPEE 134

Query: 61  NFYTCAWSMDLESGRPLLAVAGSRAVIR 88
           NFYTC W+ D +SG+PLLAVAGSR V+R
Sbjct: 135 NFYTCTWTYD-DSGKPLLAVAGSRGVVR 161

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66559864|ref|XP_623808.1| PREDICTED: polycomb protein eed-A-like [Apis mellifera]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 1   CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEE 60
           CS KEDHGQPLFG QFNH LK+ +P IFA+VGSNRVSIYECP GG+I+L QCYADPD EE
Sbjct: 75  CSIKEDHGQPLFGVQFNHHLKEGEPLIFASVGSNRVSIYECPQGGNIRLRQCYADPDPEE 134

Query: 61  NFYTCAWSMDLESGRPLLAVAGSRAVIR 88
           NFYTC W+ D +SG+PLLAVAGSR V+R
Sbjct: 135 NFYTCTWTYD-DSGKPLLAVAGSRGVVR 161

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014722|ref|XP_003691369.1| PREDICTED: polycomb protein eed-A-like [Apis florea]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 76/88 (86%), Gaps = 1/88 (1%)

Query: 1   CSHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEE 60
           CS KEDHGQPLFG QFNH LK+ +P IFA+VGSNRVSIYECP GG+I+L QCYADPD EE
Sbjct: 75  CSIKEDHGQPLFGVQFNHHLKEGEPLIFASVGSNRVSIYECPQGGNIRLRQCYADPDPEE 134

Query: 61  NFYTCAWSMDLESGRPLLAVAGSRAVIR 88
           NFYTC W+ D +SG+PLLAVAGSR V+R
Sbjct: 135 NFYTCTWTYD-DSGKPLLAVAGSRGVVR 161

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
ZFIN|ZDB-GENE-050417-287	443	eed "embryonic ectoderm develo	0.988	0.196	0.655	2.2e-27
UNIPROTKB|Q5ZKH3	446	EED "Polycomb protein EED" [Ga	0.988	0.195	0.643	7.9e-27
UNIPROTKB|F1P0V7	464	EED "Polycomb protein EED" [Ga	0.988	0.187	0.643	1.2e-26
UNIPROTKB|Q3SZ25	441	EED "Polycomb protein EED" [Bo	0.988	0.197	0.632	3.7e-26
UNIPROTKB|F1PP86	441	EED "Uncharacterized protein"	0.988	0.197	0.632	3.7e-26
UNIPROTKB|O75530	441	EED "Polycomb protein EED" [Ho	0.988	0.197	0.632	3.7e-26
MGI|MGI:95286	441	Eed "embryonic ectoderm develo	0.988	0.197	0.632	3.7e-26
UNIPROTKB|Q28DT7	438	eed "Polycomb protein eed" [Xe	0.988	0.198	0.632	4.6e-26
UNIPROTKB|Q6AZS2	438	eed-b "Polycomb protein eed-B"	0.988	0.198	0.632	4.6e-26
UNIPROTKB|Q8UUP2	438	eed-a "Polycomb protein eed-A"	0.988	0.198	0.632	4.6e-26

ZFIN|ZDB-GENE-050417-287 eed "embryonic ectoderm development" [Danio rerio (taxid:7955)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 57/87 (65%), Positives = 65/87 (74%)

Query:     2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
             S KEDHGQPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct:    89 SLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 148

Query:    62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
             FYTCAW+ D  S  PLLAVAGSR +IR
Sbjct:   149 FYTCAWTFDCSSSHPLLAVAGSRGIIR 175

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5ZKH3 EED "Polycomb protein EED" [Gallus gallus (taxid:9031)]

 Score = 302 (111.4 bits), Expect = 7.9e-27, P = 7.9e-27
 Identities = 56/87 (64%), Positives = 65/87 (74%)

Query:     2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
             S KEDHGQPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct:    92 SLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 151

Query:    62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
             FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct:   152 FYTCAWTYDSNTSHPLLAVAGSRGIIR 178

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|F1P0V7 EED "Polycomb protein EED" [Gallus gallus (taxid:9031)]

 Score = 302 (111.4 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 56/87 (64%), Positives = 65/87 (74%)

Query:     2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
             S KEDHGQPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct:   110 SLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 169

Query:    62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
             FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct:   170 FYTCAWTYDSNTSHPLLAVAGSRGIIR 196

GO:0001739 "sex chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

UNIPROTKB|Q3SZ25 EED "Polycomb protein EED" [Bos taurus (taxid:9913)]

 Score = 296 (109.3 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query:     2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
             S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct:    87 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 146

Query:    62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
             FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct:   147 FYTCAWTYDSNTSHPLLAVAGSRGIIR 173

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0045120 "pronucleus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PP86 EED "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query:     2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
             S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct:    87 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 146

Query:    62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
             FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct:   147 FYTCAWTYDSNTSHPLLAVAGSRGIIR 173

GO:0045120 "pronucleus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

UNIPROTKB|O75530 EED "Polycomb protein EED" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query:     2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
             S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct:    87 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 146

Query:    62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
             FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct:   147 FYTCAWTYDSNTSHPLLAVAGSRGIIR 173

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0005634 "nucleus" evidence=NAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0042054 "histone methyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

MGI|MGI:95286 Eed "embryonic ectoderm development" [Mus musculus (taxid:10090)]

 Score = 296 (109.3 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query:     2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
             S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct:    87 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 146

Query:    62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
             FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct:   147 FYTCAWTYDSNTSHPLLAVAGSRGIIR 173

GO:0001739 "sex chromatin" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005694 "chromosome" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IMP

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016571 "histone methylation" evidence=IMP

GO:0035098 "ESC/E(Z) complex" evidence=ISO;IDA

GO:0042054 "histone methyltransferase activity" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0045120 "pronucleus" evidence=IDA

GO:0061087 "positive regulation of histone H3-K27 methylation" evidence=IMP

UNIPROTKB|Q28DT7 eed "Polycomb protein eed" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 295 (108.9 bits), Expect = 4.6e-26, P = 4.6e-26
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query:     2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
             S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct:    84 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGEIRLLQSYVDADADEN 143

Query:    62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
             FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct:   144 FYTCAWTYDSNTSHPLLAVAGSRGIIR 170

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|Q6AZS2 eed-b "Polycomb protein eed-B" [Xenopus laevis (taxid:8355)]

 Score = 295 (108.9 bits), Expect = 4.6e-26, P = 4.6e-26
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query:     2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
             S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct:    84 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGDIRLLQSYVDADADEN 143

Query:    62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
             FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct:   144 FYTCAWTYDSNTSHPLLAVAGSRGIIR 170

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|Q8UUP2 eed-a "Polycomb protein eed-A" [Xenopus laevis (taxid:8355)]

 Score = 295 (108.9 bits), Expect = 4.6e-26, P = 4.6e-26
 Identities = 55/87 (63%), Positives = 64/87 (73%)

Query:     2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
             S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct:    84 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGDIRLLQSYVDADADEN 143

Query:    62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
             FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct:   144 FYTCAWTYDSNTSHPLLAVAGSRGIIR 170

GO:0035098 "ESC/E(Z) complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3SZ25	EED_BOVIN	No assigned EC number	0.6321	0.9886	0.1972	yes	N/A
Q5ZKH3	EED_CHICK	No assigned EC number	0.6436	0.9886	0.1950	yes	N/A
O75530	EED_HUMAN	No assigned EC number	0.6321	0.9886	0.1972	yes	N/A
Q24338	ESC_DROME	No assigned EC number	0.6235	0.9659	0.2	yes	N/A
Q28DT7	EED_XENTR	No assigned EC number	0.6321	0.9886	0.1986	yes	N/A
Q566T0	EED_DANRE	No assigned EC number	0.6551	0.9886	0.1963	yes	N/A
Q921E6	EED_MOUSE	No assigned EC number	0.6321	0.9886	0.1972	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
KOG1034|consensus	385		99.97
KOG0277|consensus	311		99.22
KOG0264|consensus	422		98.28
KOG0645|consensus	312		98.08
KOG2445|consensus	361		98.04
KOG0273|consensus	524		97.98
PTZ00421	493	coronin; Provisional	97.88
KOG0296|consensus	399		97.87
KOG0318|consensus	603		97.85
PTZ00421	493	coronin; Provisional	97.79
KOG0272|consensus	459		97.7
PTZ00420	568	coronin; Provisional	97.7
KOG2445|consensus	361		97.65
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.62
KOG0277|consensus	311		97.48
KOG1007|consensus	370		97.44
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.3
KOG0271|consensus	480		97.3
PTZ00420	568	coronin; Provisional	97.27
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.17
KOG0302|consensus	440		97.13
PLN00181	793	protein SPA1-RELATED; Provisional	97.09
KOG0290|consensus	364		97.07
KOG0264|consensus	422		96.99
KOG0322|consensus	323		96.98
KOG1587|consensus	555		96.9
KOG0316|consensus	307		96.89
KOG0266|consensus	456		96.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	96.8
KOG0319|consensus	775		96.78
KOG0310|consensus	487		96.77
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.76
KOG0310|consensus	487		96.7
KOG2110|consensus	391		96.65
KOG1538|consensus	1081		96.62
KOG0263|consensus	707		96.56
KOG0266|consensus	456		96.52
KOG0303|consensus	472		96.51
PLN00181	793	protein SPA1-RELATED; Provisional	96.49
KOG0318|consensus	603		96.49
KOG0263|consensus	707		96.48
KOG1332|consensus	299		96.38
KOG0284|consensus	464		96.37
KOG0772|consensus	641		96.24
KOG0319|consensus	775		96.02
KOG2394|consensus	636		95.95
KOG1009|consensus	434		95.94
KOG0273|consensus	524		95.93
KOG0641|consensus	350		95.86
KOG1445|consensus	1012		95.82
KOG0272|consensus	459		95.82
KOG0315|consensus	311		95.81
KOG0268|consensus	433		95.66
KOG0271|consensus	480		95.61
KOG1310|consensus	758		95.6
KOG2111|consensus	346		95.59
KOG0645|consensus	312		95.59
KOG0293|consensus	519		95.58
KOG1273|consensus	405		95.56
KOG0973|consensus	942		95.45
KOG0265|consensus	338		95.41
KOG1009|consensus	434		95.25
KOG0276|consensus	794		95.17
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	94.94
KOG0315|consensus	311		94.78
KOG0279|consensus	315		94.5
KOG1332|consensus	299		94.42
KOG0647|consensus	347		94.35
KOG0293|consensus	519		94.28
KOG0301|consensus	745		94.24
KOG1274|consensus	933		94.19
KOG0307|consensus	1049		94.16
KOG0284|consensus	464		94.1
KOG0641|consensus	350		93.68
KOG0279|consensus	315		93.64
KOG0290|consensus	364		93.28
KOG0647|consensus	347		93.26
KOG1063|consensus	764		93.22
KOG4378|consensus	673		93.15
KOG0305|consensus	484		93.01
KOG0305|consensus	484		92.79
KOG1524|consensus	737		92.77
KOG0268|consensus	433		92.68
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	92.61
KOG0269|consensus	839		92.5
KOG1407|consensus	313		92.41
KOG1587|consensus	555		92.15
KOG0291|consensus	893		92.06
KOG0269|consensus	839		92.01
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	91.97
KOG4328|consensus	498		91.83
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.68
KOG1645|consensus	463		91.62
COG2319	466	FOG: WD40 repeat [General function prediction only	91.55
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	91.36
KOG2055|consensus	514		91.3
KOG1445|consensus	1012		91.01
KOG0283|consensus	712		90.98
KOG0973|consensus	942		90.81
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	90.06
KOG1523|consensus	361		89.4
KOG0288|consensus	459		89.25
KOG0270|consensus	463		88.86
KOG0772|consensus	641		88.54
PF14157	63	YmzC: YmzC-like protein; PDB: 3KVP_E.	88.29
KOG1539|consensus	910		87.93
KOG1007|consensus	370		87.88
KOG2106|consensus	626		87.8
KOG2048|consensus	691		87.55
KOG0302|consensus	440		87.46
KOG0282|consensus	503		87.26
KOG0640|consensus	430		87.19
KOG1063|consensus	764		87.12
KOG0286|consensus	343		87.06
KOG4283|consensus	397		86.75
KOG0307|consensus	1049		86.48
KOG0295|consensus	406		86.2
KOG2111|consensus	346		85.84
KOG0313|consensus	423		85.5
KOG1407|consensus	313		84.76
KOG4532|consensus	344		84.38
KOG1523|consensus	361		84.26
KOG1036|consensus	323		83.99
KOG2055|consensus	514		83.75
KOG0640|consensus	430		83.73
KOG0291|consensus	893		83.56
KOG1538|consensus	1081		83.49
KOG0316|consensus	307		83.33
KOG0265|consensus	338		83.25
KOG0649|consensus	325		82.94
KOG1036|consensus	323		82.53
KOG0285|consensus	460		82.31
KOG0283|consensus	712		81.63
KOG0308|consensus	735		81.36
KOG1034|consensus	385		80.38
KOG0771|consensus	398		80.31
KOG0389|consensus	941		80.11

>KOG1034|consensus

Probab=99.97  E-value=3.6e-30  Score=192.41  Aligned_cols=87  Identities=57%  Similarity=1.075  Sum_probs=85.0

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +++|+|+.+||||+||+|...++.++|||+|++|++||+|+-++.+.+||+|.|+|++|+||||||++|..+++|+||+|
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            78999999999999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      |.+|+||
T Consensus       112 G~~GvIr  118 (385)
T KOG1034|consen  112 GYLGVIR  118 (385)
T ss_pred             cceeEEE
Confidence            9999997

>KOG0277|consensus

Probab=99.22  E-value=4.2e-11  Score=88.16  Aligned_cols=77  Identities=23%  Similarity=0.451  Sum_probs=66.2

Q ss_pred             cCCCCeEEEEEecCCCC----CCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           6 DHGQPLFGAQFNHLLKD----DQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~----~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      -.+++-|+|+|+||.+.    .+.|.|+.+|++++.|.+....+.+..+++|   |.++.+|.++||+.  .++. ++++
T Consensus         6 tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~---d~~D~LfdV~Wse~--~e~~-~~~a   79 (311)
T KOG0277|consen    6 TPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY---DTEDGLFDVAWSEN--HENQ-VIAA   79 (311)
T ss_pred             cCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee---ecccceeEeeecCC--Ccce-EEEE
Confidence            45678999999999875    6789999999999999999866679999999   89999999999987  3455 7777


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      ..||.+|
T Consensus        80 ~GDGSLr   86 (311)
T KOG0277|consen   80 SGDGSLR   86 (311)
T ss_pred             ecCceEE
Confidence            8888875

>KOG0264|consensus

Probab=98.28  E-value=4.1e-06  Score=64.95  Aligned_cols=74  Identities=20%  Similarity=0.359  Sum_probs=59.6

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      .-+.|..++++|+||||.    ..++||.+.+ +|.++++-.-.  +.|.++  +.++++++.|.||..   ..++||++
T Consensus       267 ~~~ah~~~vn~~~fnp~~----~~ilAT~S~D~tV~LwDlRnL~--~~lh~~--e~H~dev~~V~WSPh---~etvLASS  335 (422)
T KOG0264|consen  267 SVKAHSAEVNCVAFNPFN----EFILATGSADKTVALWDLRNLN--KPLHTF--EGHEDEVFQVEWSPH---NETVLASS  335 (422)
T ss_pred             cccccCCceeEEEeCCCC----CceEEeccCCCcEEEeechhcc--cCceec--cCCCcceEEEEeCCC---CCceeEec
Confidence            346789999999999998    6799999955 79999886531  344444  578999999999987   35789999


Q ss_pred             cCCcEe
Q psy8253          82 GSRAVI   87 (88)
Q Consensus        82 G~~G~I   87 (88)
                      |.+|.+
T Consensus       336 g~D~rl  341 (422)
T KOG0264|consen  336 GTDRRL  341 (422)
T ss_pred             ccCCcE
Confidence            999876

>KOG0645|consensus

Probab=98.08  E-value=4.1e-05  Score=57.13  Aligned_cols=76  Identities=22%  Similarity=0.345  Sum_probs=60.1

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      ..+.|+..++.++|+|-.    ..+||+||+++ |.|+.... ++--..+...|+.+...+-+|||++.   |+ +||+|
T Consensus         9 ~~~gh~~r~W~~awhp~~----g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~---g~-~La~a   79 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGK----GVILASCGTDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPH---GR-YLASA   79 (312)
T ss_pred             eecCCCCcEEEEEeccCC----ceEEEeecCCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCC---Cc-EEEEe
Confidence            357888899999999954    44999999996 99999885 22234455566678999999999987   34 89999


Q ss_pred             cCCcEe
Q psy8253          82 GSRAVI   87 (88)
Q Consensus        82 G~~G~I   87 (88)
                      ++|+.+
T Consensus        80 SFD~t~   85 (312)
T KOG0645|consen   80 SFDATV   85 (312)
T ss_pred             eccceE
Confidence            999864

>KOG2445|consensus

Probab=98.04  E-value=3.2e-05  Score=58.56  Aligned_cols=77  Identities=26%  Similarity=0.400  Sum_probs=62.3

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC------eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN------RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~------~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      .++++.++|.+||-..  ++|.||+-..+      ++.||+-..++. +.++.-.-+|+.+-+++++|++.-....++||
T Consensus       167 ~~~~~~~CvsWn~sr~--~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRM--HEPLIAVGSDEDAPHLNKVKIYEYNENGR-KWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             cccCcceEEeeccccc--cCceEEEEcccCCccccceEEEEecCCcc-eeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence            5788999999997553  68999998888      899999999864 34443344589999999999988444467899


Q ss_pred             EecCCc
Q psy8253          80 VAGSRA   85 (88)
Q Consensus        80 ~aG~~G   85 (88)
                      +|..+|
T Consensus       244 vA~kDg  249 (361)
T KOG2445|consen  244 VATKDG  249 (361)
T ss_pred             EeecCc
Confidence            999998

>KOG0273|consensus

Probab=97.98  E-value=4.8e-05  Score=59.99  Aligned_cols=85  Identities=19%  Similarity=0.338  Sum_probs=63.1

Q ss_pred             cccCCCCeEEEEEecC------------------------------------CCCCCCCEEEEeCCC-eEEEEEcCCCCC
Q psy8253           4 KEDHGQPLFGAQFNHL------------------------------------LKDDQPRIFATVGSN-RVSIYECPDGGS   46 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~------------------------------------~~~~~~~~fAtvG~~-~v~Vy~~~~~~~   46 (88)
                      .-.|+.|||++++|--                                    ++|..++-||+++.+ .++||++..++|
T Consensus       272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P  351 (524)
T KOG0273|consen  272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRP  351 (524)
T ss_pred             hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCc
Confidence            3579999999999975                                    234567889999998 699999998866


Q ss_pred             eeEE-------------------EEEEcC------------------CCCCceeEEEEeec-CCCCc----eEEEEecCC
Q psy8253          47 IKLL-------------------QCYADP------------------DIEENFYTCAWSMD-LESGR----PLLAVAGSR   84 (88)
Q Consensus        47 ~~~l-------------------~~~~d~------------------d~~e~~y~~aWs~d-~~~~~----plLa~aG~~   84 (88)
                      ++.+                   -+..|+                  .+..++||+.|+.+ +.+.+    -.|++++++
T Consensus       352 ~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d  431 (524)
T KOG0273|consen  352 VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD  431 (524)
T ss_pred             ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC
Confidence            4333                   233332                  35889999999987 33333    249999999


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      +.||
T Consensus       432 stV~  435 (524)
T KOG0273|consen  432 STVK  435 (524)
T ss_pred             CeEE
Confidence            9875

>PTZ00421 coronin; Provisional

Probab=97.88  E-value=0.00012  Score=57.68  Aligned_cols=75  Identities=16%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC----eeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS----IKLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      ..|..++.+++|+|+.    .+++|+++.+ .|.|++++.++.    -+.+..+.  .+...+.+++|+.+   +..+|+
T Consensus        72 ~GH~~~V~~v~fsP~d----~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--gH~~~V~~l~f~P~---~~~iLa  142 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFD----PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--GHTKKVGIVSFHPS---AMNVLA  142 (493)
T ss_pred             eCCCCCEEEEEEcCCC----CCEEEEEeCCCEEEEEecCCCccccccCcceEEec--CCCCcEEEEEeCcC---CCCEEE
Confidence            4688999999999975    3578888877 599999987531    12333332  46788999999976   245799


Q ss_pred             EecCCcEeC
Q psy8253          80 VAGSRAVIR   88 (88)
Q Consensus        80 ~aG~~G~Ir   88 (88)
                      +||.||.||
T Consensus       143 Sgs~DgtVr  151 (493)
T PTZ00421        143 SAGADMVVN  151 (493)
T ss_pred             EEeCCCEEE
Confidence            999999885

>KOG0296|consensus

Probab=97.87  E-value=9.5e-05  Score=56.82  Aligned_cols=71  Identities=17%  Similarity=0.292  Sum_probs=58.7

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ..+|+.++|+|+-+|     +.++.||=|++ +.++++.....     +.+.-..+.+++-+|.||.|    -.+||+|+
T Consensus        60 F~~H~~svFavsl~P-----~~~l~aTGGgDD~AflW~~~~ge-----~~~eltgHKDSVt~~~Fshd----gtlLATGd  125 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHP-----NNNLVATGGGDDLAFLWDISTGE-----FAGELTGHKDSVTCCSFSHD----GTLLATGD  125 (399)
T ss_pred             hhhcCCceEEEEeCC-----CCceEEecCCCceEEEEEccCCc-----ceeEecCCCCceEEEEEccC----ceEEEecC
Confidence            468999999999999     25667887776 69999999873     44555578999999999988    46899999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       126 msG~v~  131 (399)
T KOG0296|consen  126 MSGKVL  131 (399)
T ss_pred             CCccEE
Confidence            999885

>KOG0318|consensus

Probab=97.85  E-value=7.2e-05  Score=59.73  Aligned_cols=72  Identities=19%  Similarity=0.330  Sum_probs=53.1

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEc-CCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYAD-PDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d-~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      ..+|..=+++|+|+|-     ...||++|.++ +.||+=...   +.+..+.| +-+.-++|+++|++|   +.. ++++
T Consensus       186 ~r~HskFV~~VRysPD-----G~~Fat~gsDgki~iyDGktg---e~vg~l~~~~aHkGsIfalsWsPD---s~~-~~T~  253 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPD-----GSRFATAGSDGKIYIYDGKTG---EKVGELEDSDAHKGSIFALSWSPD---STQ-FLTV  253 (603)
T ss_pred             ccccccceeeEEECCC-----CCeEEEecCCccEEEEcCCCc---cEEEEecCCCCccccEEEEEECCC---Cce-EEEe
Confidence            4677778999999995     35699999995 999987776   44555543 357899999999998   234 5555


Q ss_pred             cCCcEe
Q psy8253          82 GSRAVI   87 (88)
Q Consensus        82 G~~G~I   87 (88)
                      +.+-.+
T Consensus       254 SaDkt~  259 (603)
T KOG0318|consen  254 SADKTI  259 (603)
T ss_pred             cCCceE
Confidence            555444

>PTZ00421 coronin; Provisional

Probab=97.79  E-value=0.00026  Score=55.80  Aligned_cols=71  Identities=15%  Similarity=0.343  Sum_probs=55.6

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|-.    .+++|+.|.+ .|.|+++...   +.++.+.  .+...+++++|+.+    ..+|++|+.
T Consensus       122 ~gH~~~V~~l~f~P~~----~~iLaSgs~DgtVrIWDl~tg---~~~~~l~--~h~~~V~sla~spd----G~lLatgs~  188 (493)
T PTZ00421        122 QGHTKKVGIVSFHPSA----MNVLASAGADMVVNVWDVERG---KAVEVIK--CHSDQITSLEWNLD----GSLLCTTSK  188 (493)
T ss_pred             cCCCCcEEEEEeCcCC----CCEEEEEeCCCEEEEEECCCC---eEEEEEc--CCCCceEEEEEECC----CCEEEEecC
Confidence            5688899999999843    4688888876 5999999876   3444442  35678999999987    356999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.||
T Consensus       189 Dg~Ir  193 (493)
T PTZ00421        189 DKKLN  193 (493)
T ss_pred             CCEEE
Confidence            99985

>KOG0272|consensus

Probab=97.70  E-value=8.5e-05  Score=57.91  Aligned_cols=73  Identities=22%  Similarity=0.290  Sum_probs=58.5

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      .++|-|..++|+++|+|-     ..+.||.|-+. -.|+++-+...+++|+.     +-.++|+|+|++.   |.. ||+
T Consensus       297 L~QEGHs~~v~~iaf~~D-----GSL~~tGGlD~~~RvWDlRtgr~im~L~g-----H~k~I~~V~fsPN---Gy~-lAT  362 (459)
T KOG0272|consen  297 LLQEGHSKGVFSIAFQPD-----GSLAATGGLDSLGRVWDLRTGRCIMFLAG-----HIKEILSVAFSPN---GYH-LAT  362 (459)
T ss_pred             HhhcccccccceeEecCC-----CceeeccCccchhheeecccCcEEEEecc-----cccceeeEeECCC---ceE-Eee
Confidence            367999999999999984     34567766664 78999988877777765     4667999999976   566 999


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      ||.|+++|
T Consensus       363 gs~Dnt~k  370 (459)
T KOG0272|consen  363 GSSDNTCK  370 (459)
T ss_pred             cCCCCcEE
Confidence            99999875

>PTZ00420 coronin; Provisional

Probab=97.70  E-value=0.00043  Score=55.69  Aligned_cols=75  Identities=13%  Similarity=0.304  Sum_probs=56.2

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC-e----eEEEEEEcCCCCCceeEEEEeecCCCCceEE
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS-I----KLLQCYADPDIEENFYTCAWSMDLESGRPLL   78 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~-~----~~l~~~~d~d~~e~~y~~aWs~d~~~~~plL   78 (88)
                      ..|..+|.+++|+|+.    ..++|++|.+ .|.|++++..+. .    +.+..+  ..+...+.+++|+.+   +.-+|
T Consensus        71 ~gH~~~V~~lafsP~~----~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~---g~~iL  141 (568)
T PTZ00420         71 KGHTSSILDLQFNPCF----SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPM---NYYIM  141 (568)
T ss_pred             cCCCCCEEEEEEcCCC----CCEEEEEeCCCeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCC---CCeEE
Confidence            5689999999999975    4578998877 699999986532 1    122222  246778999999976   45568


Q ss_pred             EEecCCcEeC
Q psy8253          79 AVAGSRAVIR   88 (88)
Q Consensus        79 a~aG~~G~Ir   88 (88)
                      |+||.+|.||
T Consensus       142 aSgS~DgtIr  151 (568)
T PTZ00420        142 CSSGFDSFVN  151 (568)
T ss_pred             EEEeCCCeEE
Confidence            8999999885

>KOG2445|consensus

Probab=97.65  E-value=0.00055  Score=51.98  Aligned_cols=76  Identities=17%  Similarity=0.388  Sum_probs=60.7

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCC-----------CC------CeeEEEEEEcCCCCCceeEEEEe
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPD-----------GG------SIKLLQCYADPDIEENFYTCAWS   68 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~-----------~~------~~~~l~~~~d~d~~e~~y~~aWs   68 (88)
                      +|+.||++++|.|.... ...++|+..++.|.||.+..           ..      +++++..+  +|++-+++.|.|.
T Consensus       221 d~~dpI~di~wAPn~Gr-~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~--~~H~~~VWrv~wN  297 (361)
T KOG2445|consen  221 DHTDPIRDISWAPNIGR-SYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL--DDHNGEVWRVRWN  297 (361)
T ss_pred             CCCCcceeeeeccccCC-ceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeec--cCCCCceEEEEEe
Confidence            78999999999998864 68889999888899999873           11      24444455  3688899999998


Q ss_pred             ecCCCCceEEEEecCCcEeC
Q psy8253          69 MDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        69 ~d~~~~~plLa~aG~~G~Ir   88 (88)
                      ..   |. +|++.|.||.+|
T Consensus       298 mt---Gt-iLsStGdDG~VR  313 (361)
T KOG2445|consen  298 MT---GT-ILSSTGDDGCVR  313 (361)
T ss_pred             ee---ee-EEeecCCCceee
Confidence            66   33 599999999987

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.62  E-value=0.00062  Score=45.18  Aligned_cols=69  Identities=19%  Similarity=0.294  Sum_probs=52.6

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .|..++.+++|+|.     ..++++.+ .+++.+|+.....   .++.+.  .+...+.+++|+.+    ..+|++++.+
T Consensus       217 ~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~i~~~~~~~---~~~~~~--~~~~~i~~~~~~~~----~~~l~~~~~d  282 (289)
T cd00200         217 GHENGVNSVAFSPD-----GYLLASGSEDGTIRVWDLRTGE---CVQTLS--GHTNSVTSLAWSPD----GKRLASGSAD  282 (289)
T ss_pred             hcCCceEEEEEcCC-----CcEEEEEcCCCcEEEEEcCCce---eEEEcc--ccCCcEEEEEECCC----CCEEEEecCC
Confidence            56678999999874     56777777 7789999998763   344443  35668999999976    3569999999


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.|+
T Consensus       283 ~~i~  286 (289)
T cd00200         283 GTIR  286 (289)
T ss_pred             CeEE
Confidence            9874

>KOG0277|consensus

Probab=97.48  E-value=0.0008  Score=50.12  Aligned_cols=72  Identities=19%  Similarity=0.515  Sum_probs=55.3

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..-||.++|+|..    +.+||.++++ ...++++..-|.-+.|-     -++-+.-||-|++-  + .-+|++||.
T Consensus       144 ~gh~~~Iy~a~~sp~~----~nlfas~Sgd~~l~lwdvr~~gk~~~i~-----ah~~Eil~cdw~ky--~-~~vl~Tg~v  211 (311)
T KOG0277|consen  144 NGHNSCIYQAAFSPHI----PNLFASASGDGTLRLWDVRSPGKFMSIE-----AHNSEILCCDWSKY--N-HNVLATGGV  211 (311)
T ss_pred             cCCccEEEEEecCCCC----CCeEEEccCCceEEEEEecCCCceeEEE-----eccceeEeeccccc--C-CcEEEecCC
Confidence            4588899999999966    6799999998 58888877654322222     24567899999976  2 456999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      |+.||
T Consensus       212 d~~vr  216 (311)
T KOG0277|consen  212 DNLVR  216 (311)
T ss_pred             CceEE
Confidence            99986

>KOG1007|consensus

Probab=97.44  E-value=0.00073  Score=51.17  Aligned_cols=74  Identities=20%  Similarity=0.377  Sum_probs=51.4

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCC----------------------CeeEE-----EEEEcC
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGG----------------------SIKLL-----QCYADP   56 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~----------------------~~~~l-----~~~~d~   56 (88)
                      .++|..=+|+|+|||+.    +|+.-+.|.+...+..|-..-                      ..++|     +.|  +
T Consensus       254 l~~HsHWvW~VRfn~~h----dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty--d  327 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEH----DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY--D  327 (370)
T ss_pred             cCCCceEEEEEEecCcc----ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc--c
Confidence            46788889999999976    678888888876666654310                      12233     345  3


Q ss_pred             CCCCceeEEEEeecCCCCceEEE-EecCCcEe
Q psy8253          57 DIEENFYTCAWSMDLESGRPLLA-VAGSRAVI   87 (88)
Q Consensus        57 d~~e~~y~~aWs~d~~~~~plLa-~aG~~G~I   87 (88)
                      ++++++|+|+||-.    +|.|- .=+.||++
T Consensus       328 ehEDSVY~~aWSsa----dPWiFASLSYDGRv  355 (370)
T KOG1007|consen  328 EHEDSVYALAWSSA----DPWIFASLSYDGRV  355 (370)
T ss_pred             ccccceEEEeeccC----CCeeEEEeccCceE
Confidence            58999999999944    67644 44777765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.30  E-value=0.0038  Score=41.34  Aligned_cols=70  Identities=21%  Similarity=0.238  Sum_probs=51.6

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|-     .+.+++.+ .+.+.||++....   .++...  .+......+.|+.+.    .+|++++.
T Consensus         6 ~~h~~~i~~~~~~~~-----~~~l~~~~~~g~i~i~~~~~~~---~~~~~~--~~~~~i~~~~~~~~~----~~l~~~~~   71 (289)
T cd00200           6 KGHTGGVTCVAFSPD-----GKLLATGSGDGTIKVWDLETGE---LLRTLK--GHTGPVRDVAASADG----TYLASGSS   71 (289)
T ss_pred             cccCCCEEEEEEcCC-----CCEEEEeecCcEEEEEEeeCCC---cEEEEe--cCCcceeEEEECCCC----CEEEEEcC
Confidence            479999999999984     45677777 6689999998764   333332  345566789999772    56899998


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus        72 ~~~i~   76 (289)
T cd00200          72 DKTIR   76 (289)
T ss_pred             CCeEE
Confidence            88874

>KOG0271|consensus

Probab=97.30  E-value=0.00076  Score=52.57  Aligned_cols=71  Identities=20%  Similarity=0.329  Sum_probs=56.0

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ..-|+.++-+++|+| .    ...+|+=+|+ -|.+++|.+..|+..++     .+..-+-|++||+|   |. .||+|+
T Consensus       111 ~~GH~e~Vl~~~fsp-~----g~~l~tGsGD~TvR~WD~~TeTp~~t~K-----gH~~WVlcvawsPD---gk-~iASG~  176 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSP-T----GSRLVTGSGDTTVRLWDLDTETPLFTCK-----GHKNWVLCVAWSPD---GK-KIASGS  176 (480)
T ss_pred             cCCCCCcEEEEEecC-C----CceEEecCCCceEEeeccCCCCcceeec-----CCccEEEEEEECCC---cc-hhhccc
Confidence            367999999999999 2    4457777666 59999999986655554     35667999999998   34 499999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       177 ~dg~I~  182 (480)
T KOG0271|consen  177 KDGSIR  182 (480)
T ss_pred             cCCeEE
Confidence            999985

>PTZ00420 coronin; Provisional

Probab=97.27  E-value=0.0024  Score=51.48  Aligned_cols=70  Identities=14%  Similarity=0.232  Sum_probs=52.2

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|...+.+++|+|-.    ..++|++|.+ .|.|+++....   .+..+.   ....+++++|+.+   | .+|++++.
T Consensus       122 ~gH~~~V~sVaf~P~g----~~iLaSgS~DgtIrIWDl~tg~---~~~~i~---~~~~V~Slswspd---G-~lLat~s~  187 (568)
T PTZ00420        122 KGHKKKISIIDWNPMN----YYIMCSSGFDSFVNIWDIENEK---RAFQIN---MPKKLSSLKWNIK---G-NLLSGTCV  187 (568)
T ss_pred             ecCCCcEEEEEECCCC----CeEEEEEeCCCeEEEEECCCCc---EEEEEe---cCCcEEEEEECCC---C-CEEEEEec
Confidence            4588899999999842    4577887755 69999998763   334442   3457999999987   3 36888999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.||
T Consensus       188 D~~Ir  192 (568)
T PTZ00420        188 GKHMH  192 (568)
T ss_pred             CCEEE
Confidence            98875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.17  E-value=0.0018  Score=33.07  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=28.5

Q ss_pred             eEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          48 KLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        48 ~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      ++++.+.  .++..+++++|+.+    ..+|++||.||.||
T Consensus         2 ~~~~~~~--~h~~~i~~i~~~~~----~~~~~s~~~D~~i~   36 (39)
T PF00400_consen    2 KCVRTFR--GHSSSINSIAWSPD----GNFLASGSSDGTIR   36 (39)
T ss_dssp             EEEEEEE--SSSSSEEEEEEETT----SSEEEEEETTSEEE
T ss_pred             eEEEEEc--CCCCcEEEEEEecc----cccceeeCCCCEEE
Confidence            3456664  47899999999988    56799999999986

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0302|consensus

Probab=97.13  E-value=0.003  Score=49.14  Aligned_cols=57  Identities=18%  Similarity=0.415  Sum_probs=43.5

Q ss_pred             CCCCEEEEeCCC-eEEEEEcCCCC--CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          23 DQPRIFATVGSN-RVSIYECPDGG--SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        23 ~~~~~fAtvG~~-~v~Vy~~~~~~--~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      .+..+||+|+-+ .|.|.++-...  ++...+     -++-++.-++|+..    .||||+||.+|.++
T Consensus       268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k-----Ah~sDVNVISWnr~----~~lLasG~DdGt~~  327 (440)
T KOG0302|consen  268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK-----AHNSDVNVISWNRR----EPLLASGGDDGTLS  327 (440)
T ss_pred             ccCceEEeeecCceEEEEEecCCCccceeEee-----ccCCceeeEEccCC----cceeeecCCCceEE
Confidence            578899999988 48888877642  333332     35668999999977    46999999999874

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.09  E-value=0.0062  Score=49.85  Aligned_cols=72  Identities=14%  Similarity=0.304  Sum_probs=53.6

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++++++|+|-.    ..++|+.|.+ .|.||++...   ..+..+.   ....+++++|...  ++ .+|++|+
T Consensus       571 ~~~H~~~V~~l~~~p~~----~~~L~Sgs~Dg~v~iWd~~~~---~~~~~~~---~~~~v~~v~~~~~--~g-~~latgs  637 (793)
T PLN00181        571 MKEHEKRVWSIDYSSAD----PTLLASGSDDGSVKLWSINQG---VSIGTIK---TKANICCVQFPSE--SG-RSLAFGS  637 (793)
T ss_pred             ecCCCCCEEEEEEcCCC----CCEEEEEcCCCEEEEEECCCC---cEEEEEe---cCCCeEEEEEeCC--CC-CEEEEEe
Confidence            35788999999999743    5679999876 5999999875   3344442   2357889999654  33 4599999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       638 ~dg~I~  643 (793)
T PLN00181        638 ADHKVY  643 (793)
T ss_pred             CCCeEE
Confidence            999885

>KOG0290|consensus

Probab=97.07  E-value=0.0049  Score=46.78  Aligned_cols=74  Identities=22%  Similarity=0.407  Sum_probs=50.0

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-----------CeeEEE---------------------E
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-----------SIKLLQ---------------------C   52 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-----------~~~~l~---------------------~   52 (88)
                      .|..++|+++|.-    +..++||+||.+ .|.++++-.-.           .-.+|+                     .
T Consensus       194 AHDKEV~DIaf~~----~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~  269 (364)
T KOG0290|consen  194 AHDKEVYDIAFLK----GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV  269 (364)
T ss_pred             ecCcceeEEEecc----CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence            4888999999987    579999999998 47766654310           011222                     1


Q ss_pred             EEc-----------CCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253          53 YAD-----------PDIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus        53 ~~d-----------~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      +.|           ..+...+..+||..-  +..+ ||+||.|-.
T Consensus       270 iLDiR~P~tpva~L~~H~a~VNgIaWaPh--S~~h-ictaGDD~q  311 (364)
T KOG0290|consen  270 ILDIRVPCTPVARLRNHQASVNGIAWAPH--SSSH-ICTAGDDCQ  311 (364)
T ss_pred             EEEecCCCcceehhhcCcccccceEecCC--CCce-eeecCCcce
Confidence            111           257888889999876  5556 888887743

>KOG0264|consensus

Probab=96.99  E-value=0.0017  Score=50.68  Aligned_cols=76  Identities=13%  Similarity=0.199  Sum_probs=56.7

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +...|...+-+|+|.|+.    .++||+||.+ ++.|.+.-.+ .-+. +.-.+ .+..++.||+|..-   +..+||+|
T Consensus       222 ~~~~h~~~VeDV~~h~~h----~~lF~sv~dd~~L~iwD~R~~-~~~~-~~~~~-ah~~~vn~~~fnp~---~~~ilAT~  291 (422)
T KOG0264|consen  222 IFSGHEDVVEDVAWHPLH----EDLFGSVGDDGKLMIWDTRSN-TSKP-SHSVK-AHSAEVNCVAFNPF---NEFILATG  291 (422)
T ss_pred             EeecCCcceehhhccccc----hhhheeecCCCeEEEEEcCCC-CCCC-ccccc-ccCCceeEEEeCCC---CCceEEec
Confidence            456788899999999876    6789999998 5888888752 1111 11111 35788999999976   36889999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      |.|+.|+
T Consensus       292 S~D~tV~  298 (422)
T KOG0264|consen  292 SADKTVA  298 (422)
T ss_pred             cCCCcEE
Confidence            9999874

>KOG0322|consensus

Probab=96.98  E-value=0.00086  Score=50.19  Aligned_cols=56  Identities=27%  Similarity=0.370  Sum_probs=48.6

Q ss_pred             CCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253          23 DQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        23 ~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      .+..+|||.|=+ |+.||.+.+-.|+.+|+--     ...+.++|.+.|    .+++|+||+|+.|
T Consensus       261 pD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-----sagvn~vAfspd----~~lmAaaskD~rI  317 (323)
T KOG0322|consen  261 PDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-----SAGVNAVAFSPD----CELMAAASKDARI  317 (323)
T ss_pred             cCCcEEeecccCCcEEEEEeccCCchhhhhhh-----hcceeEEEeCCC----CchhhhccCCceE
Confidence            467899999977 8999999999888888644     467999999987    6899999999987

>KOG1587|consensus

Probab=96.90  E-value=0.0022  Score=51.59  Aligned_cols=71  Identities=20%  Similarity=0.301  Sum_probs=52.6

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcC-CCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECP-DGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~-~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      .-|..+++.+.||||.    ..+|.++|.-.|.|+... ...|   |-.|.  +....++++|||.-   .-.++|++-.
T Consensus       395 ~~h~g~v~~v~~nPF~----~k~fls~gDW~vriWs~~~~~~P---l~~~~--~~~~~v~~vaWSpt---rpavF~~~d~  462 (555)
T KOG1587|consen  395 ITHIGPVYAVSRNPFY----PKNFLSVGDWTVRIWSEDVIASP---LLSLD--SSPDYVTDVAWSPT---RPAVFATVDG  462 (555)
T ss_pred             cccCcceEeeecCCCc----cceeeeeccceeEeccccCCCCc---chhhh--hccceeeeeEEcCc---CceEEEEEcC
Confidence            3477899999999998    568999999999999998 4433   33332  34555999999976   1235777777


Q ss_pred             CcEe
Q psy8253          84 RAVI   87 (88)
Q Consensus        84 ~G~I   87 (88)
                      +|.|
T Consensus       463 ~G~l  466 (555)
T KOG1587|consen  463 DGNL  466 (555)
T ss_pred             CCce
Confidence            8876

>KOG0316|consensus

Probab=96.89  E-value=0.0068  Score=44.99  Aligned_cols=57  Identities=16%  Similarity=0.338  Sum_probs=47.9

Q ss_pred             CCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          23 DQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        23 ~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      .++.-||.||+++ |++++..++   ++++.|+  .+...+.+++...+    ..+|++|+.|..||
T Consensus        69 ~Dnskf~s~GgDk~v~vwDV~TG---kv~Rr~r--gH~aqVNtV~fNee----sSVv~SgsfD~s~r  126 (307)
T KOG0316|consen   69 SDNSKFASCGGDKAVQVWDVNTG---KVDRRFR--GHLAQVNTVRFNEE----SSVVASGSFDSSVR  126 (307)
T ss_pred             ccccccccCCCCceEEEEEcccC---eeeeecc--cccceeeEEEecCc----ceEEEeccccceeE
Confidence            3466799999996 889999998   8999887  48889999998866    56799999998875

>KOG0266|consensus

Probab=96.89  E-value=0.0095  Score=46.16  Aligned_cols=71  Identities=18%  Similarity=0.276  Sum_probs=56.1

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|...+++++|.|-.     ..+++.+.+ .+.|++...++  ..++.+.  .+...+|+|+++.+   + .+|++|+.
T Consensus       200 ~~h~~~v~~~~fs~d~-----~~l~s~s~D~tiriwd~~~~~--~~~~~l~--gH~~~v~~~~f~p~---g-~~i~Sgs~  266 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDG-----SYLLSGSDDKTLRIWDLKDDG--RNLKTLK--GHSTYVTSVAFSPD---G-NLLVSGSD  266 (456)
T ss_pred             cccccceeeeEECCCC-----cEEEEecCCceEEEeeccCCC--eEEEEec--CCCCceEEEEecCC---C-CEEEEecC
Confidence            5799999999999944     267777777 59999995543  4555554  47778899999988   3 77999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      |+.||
T Consensus       267 D~tvr  271 (456)
T KOG0266|consen  267 DGTVR  271 (456)
T ss_pred             CCcEE
Confidence            99986

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=96.80  E-value=0.005  Score=31.31  Aligned_cols=33  Identities=9%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEE
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYE   40 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~   40 (88)
                      ..+.|..++++++|+|-     .+.||++|.+ .|.||+
T Consensus         6 ~~~~h~~~i~~i~~~~~-----~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPD-----GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETT-----SSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecc-----cccceeeCCCCEEEEEC
Confidence            45789999999999996     6778888886 587774

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0319|consensus

Probab=96.78  E-value=0.0087  Score=49.52  Aligned_cols=71  Identities=17%  Similarity=0.336  Sum_probs=56.7

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ...|+.-+|+|.|+|++     |+.||++++. |.|+.+.+-   .-|+.+.  .+.-.+.-++.-..   +.. |++||
T Consensus       501 LsGH~RGvw~V~Fs~~d-----q~laT~SgD~TvKIW~is~f---SClkT~e--GH~~aVlra~F~~~---~~q-liS~~  566 (775)
T KOG0319|consen  501 LSGHTRGVWCVSFSKND-----QLLATCSGDKTVKIWSISTF---SCLKTFE--GHTSAVLRASFIRN---GKQ-LISAG  566 (775)
T ss_pred             eeCCccceEEEEecccc-----ceeEeccCCceEEEEEeccc---eeeeeec--CccceeEeeeeeeC---CcE-EEecc
Confidence            45799999999999954     7899999995 999999885   6777773  36777777776644   556 99999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.||
T Consensus       567 adGliK  572 (775)
T KOG0319|consen  567 ADGLIK  572 (775)
T ss_pred             CCCcEE
Confidence            999986

>KOG0310|consensus

Probab=96.77  E-value=0.0095  Score=47.22  Aligned_cols=74  Identities=11%  Similarity=0.078  Sum_probs=58.8

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ...|..|+--++|.|..    ..+|++++.+++.-|.-...   ..+|.+.+ ++++-+=|.+|+..   ..+++++||.
T Consensus       106 ~~ah~apv~~~~f~~~d----~t~l~s~sDd~v~k~~d~s~---a~v~~~l~-~htDYVR~g~~~~~---~~hivvtGsY  174 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQD----NTMLVSGSDDKVVKYWDLST---AYVQAELS-GHTDYVRCGDISPA---NDHIVVTGSY  174 (487)
T ss_pred             HhhccCceeEEEecccC----CeEEEecCCCceEEEEEcCC---cEEEEEec-CCcceeEeeccccC---CCeEEEecCC
Confidence            45788999999999865    78999999999777766554   22455554 68889999999977   2578999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      ||.||
T Consensus       175 Dg~vr  179 (487)
T KOG0310|consen  175 DGKVR  179 (487)
T ss_pred             CceEE
Confidence            99997

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.76  E-value=0.011  Score=40.95  Aligned_cols=61  Identities=25%  Similarity=0.445  Sum_probs=41.8

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC---eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN---RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~---~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      +...+|.+++|+|-     ..-||++-|.   +|.+|+..    .+.+..+.    .....+++|+++   |+ +||+||
T Consensus        57 ~~~~~I~~~~WsP~-----g~~favi~g~~~~~v~lyd~~----~~~i~~~~----~~~~n~i~wsP~---G~-~l~~~g  119 (194)
T PF08662_consen   57 KKEGPIHDVAWSPN-----GNEFAVIYGSMPAKVTLYDVK----GKKIFSFG----TQPRNTISWSPD---GR-FLVLAG  119 (194)
T ss_pred             cCCCceEEEEECcC-----CCEEEEEEccCCcccEEEcCc----ccEeEeec----CCCceEEEECCC---CC-EEEEEE
Confidence            34457999999993     4558877433   69999995    35666662    345668999987   44 466665


Q ss_pred             C
Q psy8253          83 S   83 (88)
Q Consensus        83 ~   83 (88)
                      .
T Consensus       120 ~  120 (194)
T PF08662_consen  120 F  120 (194)
T ss_pred             c
Confidence            4

>KOG0310|consensus

Probab=96.70  E-value=0.0026  Score=50.30  Aligned_cols=67  Identities=21%  Similarity=0.276  Sum_probs=55.9

Q ss_pred             CCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253           9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus         9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      .+|-++.|+|-.|    .-||+.++-||+||.....+..+.+..|.|     ..|++....|    -.|||+|+..|+||
T Consensus        27 ~~vssl~fsp~~P----~d~aVt~S~rvqly~~~~~~~~k~~srFk~-----~v~s~~fR~D----G~LlaaGD~sG~V~   93 (487)
T KOG0310|consen   27 NSVSSLCFSPKHP----YDFAVTSSVRVQLYSSVTRSVRKTFSRFKD-----VVYSVDFRSD----GRLLAAGDESGHVK   93 (487)
T ss_pred             CcceeEecCCCCC----CceEEecccEEEEEecchhhhhhhHHhhcc-----ceeEEEeecC----CeEEEccCCcCcEE
Confidence            4889999999654    349999999999999988777777778854     5899999887    46799999999985

>KOG2110|consensus

Probab=96.65  E-value=0.02  Score=44.35  Aligned_cols=71  Identities=20%  Similarity=0.390  Sum_probs=57.8

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe--EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR--VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~--v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      +-|+.++=+++|||-     ..+.||.+.+.  |.|+..+.+   +.++.|+-.-..-.+|+++++.|    .++|++.|
T Consensus       170 ~aH~~~lAalafs~~-----G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~d----s~~L~~sS  237 (391)
T KOG2110|consen  170 NAHKGPLAALAFSPD-----GTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPD----SQFLAASS  237 (391)
T ss_pred             EecCCceeEEEECCC-----CCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCC----CCeEEEec
Confidence            589999999999983     46799998875  888888776   56666655456788999999988    46899999


Q ss_pred             CCcEe
Q psy8253          83 SRAVI   87 (88)
Q Consensus        83 ~~G~I   87 (88)
                      ..+.|
T Consensus       238 ~TeTV  242 (391)
T KOG2110|consen  238 NTETV  242 (391)
T ss_pred             CCCeE
Confidence            98876

>KOG1538|consensus

Probab=96.62  E-value=0.006  Score=50.73  Aligned_cols=63  Identities=16%  Similarity=0.274  Sum_probs=44.7

Q ss_pred             CCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      ..++.++|-|-.    ++ +....++|+.||+...++-+..|+.     +.+.+||||||.|.   . +.|+||.|-
T Consensus        13 hci~d~afkPDG----sq-L~lAAg~rlliyD~ndG~llqtLKg-----HKDtVycVAys~dG---k-rFASG~aDK   75 (1081)
T KOG1538|consen   13 HCINDIAFKPDG----TQ-LILAAGSRLLVYDTSDGTLLQPLKG-----HKDTVYCVAYAKDG---K-RFASGSADK   75 (1081)
T ss_pred             cchheeEECCCC----ce-EEEecCCEEEEEeCCCccccccccc-----ccceEEEEEEccCC---c-eeccCCCce
Confidence            378999998843    33 4455679999999998855555554     56679999999982   2 356665543

>KOG0263|consensus

Probab=96.56  E-value=0.0085  Score=49.44  Aligned_cols=73  Identities=21%  Similarity=0.350  Sum_probs=58.0

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      ++..-|+.||-+++|+|     ....+|+-+.+ .|.||++...   +++..+.  ++...+|+++.|.|    .-+||+
T Consensus       571 RiF~GH~~~V~al~~Sp-----~Gr~LaSg~ed~~I~iWDl~~~---~~v~~l~--~Ht~ti~SlsFS~d----g~vLas  636 (707)
T KOG0263|consen  571 RIFTGHKGPVTALAFSP-----CGRYLASGDEDGLIKIWDLANG---SLVKQLK--GHTGTIYSLSFSRD----GNVLAS  636 (707)
T ss_pred             EEecCCCCceEEEEEcC-----CCceEeecccCCcEEEEEcCCC---cchhhhh--cccCceeEEEEecC----CCEEEe
Confidence            46678999999999999     35668888877 5999999887   4444444  35888999999998    345999


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      ||.+..||
T Consensus       637 gg~DnsV~  644 (707)
T KOG0263|consen  637 GGADNSVR  644 (707)
T ss_pred             cCCCCeEE
Confidence            99998775

>KOG0266|consensus

Probab=96.52  E-value=0.026  Score=43.72  Aligned_cols=71  Identities=20%  Similarity=0.286  Sum_probs=53.6

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|...+++|+|+|-     .+++++++.++ |.|+.+...   +.++...  .+.+.+-+|+-+.+   ++ +|++|+
T Consensus       242 l~gH~~~v~~~~f~p~-----g~~i~Sgs~D~tvriWd~~~~---~~~~~l~--~hs~~is~~~f~~d---~~-~l~s~s  307 (456)
T KOG0266|consen  242 LKGHSTYVTSVAFSPD-----GNLLVSGSDDGTVRIWDVRTG---ECVRKLK--GHSDGISGLAFSPD---GN-LLVSAS  307 (456)
T ss_pred             ecCCCCceEEEEecCC-----CCEEEEecCCCcEEEEeccCC---eEEEeee--ccCCceEEEEECCC---CC-EEEEcC
Confidence            3589999999999983     26788888885 999999985   5555554  35556777777666   34 488888


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .||.||
T Consensus       308 ~d~~i~  313 (456)
T KOG0266|consen  308 YDGTIR  313 (456)
T ss_pred             CCccEE
Confidence            899885

>KOG0303|consensus

Probab=96.51  E-value=0.017  Score=45.32  Aligned_cols=76  Identities=18%  Similarity=0.381  Sum_probs=55.3

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-------CeeEEE---------EE--------------
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-------SIKLLQ---------CY--------------   53 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-------~~~~l~---------~~--------------   53 (88)
                      -.|..|+-+++||||.    +++.|+++.+ .|-|++.+.++       ++..|.         .|              
T Consensus        78 ~GHt~~vLDi~w~Pfn----D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFN----DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             cCccccccccccCccC----CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            4688999999999997    5678998888 58899988864       222221         00              


Q ss_pred             --------------EcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          54 --------------ADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        54 --------------~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                                    ..-++.+-+|+++|+.|   | .+||+++.|-+||
T Consensus       154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~d---G-s~l~TtckDKkvR  198 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRD---G-SLLCTTCKDKKVR  198 (472)
T ss_pred             ceEEEEeccCCceeeecCCCCeEEEEEeccC---C-ceeeeecccceeE
Confidence                          00256888999999988   3 3588888888776

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.49  E-value=0.03  Score=45.91  Aligned_cols=69  Identities=16%  Similarity=0.280  Sum_probs=51.1

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      ..++.+++|+|+.    ...+|+.+.+ .|.|+++...   +.++.+.  .+...+++++|+..  + ..+|++||.+|.
T Consensus       532 ~~~v~~l~~~~~~----~~~las~~~Dg~v~lWd~~~~---~~~~~~~--~H~~~V~~l~~~p~--~-~~~L~Sgs~Dg~  599 (793)
T PLN00181        532 RSKLSGICWNSYI----KSQVASSNFEGVVQVWDVARS---QLVTEMK--EHEKRVWSIDYSSA--D-PTLLASGSDDGS  599 (793)
T ss_pred             cCceeeEEeccCC----CCEEEEEeCCCeEEEEECCCC---eEEEEec--CCCCCEEEEEEcCC--C-CCEEEEEcCCCE
Confidence            3467788888875    3467777765 6999998875   4555553  46788999999864  2 346999999998


Q ss_pred             eC
Q psy8253          87 IR   88 (88)
Q Consensus        87 Ir   88 (88)
                      ||
T Consensus       600 v~  601 (793)
T PLN00181        600 VK  601 (793)
T ss_pred             EE
Confidence            85

>KOG0318|consensus

Probab=96.49  E-value=0.019  Score=46.27  Aligned_cols=72  Identities=15%  Similarity=0.200  Sum_probs=53.9

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      .+++|..++-.++|+|-.     .+||.+--.| |.+|+...+..  ....+..  +...+.|+||+.+    +.+||+|
T Consensus       482 ~~~~h~a~iT~vaySpd~-----~yla~~Da~rkvv~yd~~s~~~--~~~~w~F--HtakI~~~aWsP~----n~~vATG  548 (603)
T KOG0318|consen  482 KLLEHRAAITDVAYSPDG-----AYLAAGDASRKVVLYDVASREV--KTNRWAF--HTAKINCVAWSPN----NKLVATG  548 (603)
T ss_pred             eeecccCCceEEEECCCC-----cEEEEeccCCcEEEEEcccCce--ecceeee--eeeeEEEEEeCCC----ceEEEec
Confidence            467899999999999944     4577776665 99999998743  3333321  6778999999988    4579999


Q ss_pred             cCCcEe
Q psy8253          82 GSRAVI   87 (88)
Q Consensus        82 G~~G~I   87 (88)
                      +.|-.|
T Consensus       549 SlDt~V  554 (603)
T KOG0318|consen  549 SLDTNV  554 (603)
T ss_pred             cccceE
Confidence            887554

>KOG0263|consensus

Probab=96.48  E-value=0.0047  Score=50.89  Aligned_cols=71  Identities=18%  Similarity=0.283  Sum_probs=49.5

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ..-|..|+|.|+|+|+.     -.|||+|.++ +.+|.+...   ..++.|..  +-.++-||+.-+.    ..++|+||
T Consensus       489 y~GH~~PVwdV~F~P~G-----yYFatas~D~tArLWs~d~~---~PlRifag--hlsDV~cv~FHPN----s~Y~aTGS  554 (707)
T KOG0263|consen  489 YKGHLAPVWDVQFAPRG-----YYFATASHDQTARLWSTDHN---KPLRIFAG--HLSDVDCVSFHPN----SNYVATGS  554 (707)
T ss_pred             ecCCCcceeeEEecCCc-----eEEEecCCCceeeeeecccC---Cchhhhcc--cccccceEEECCc----ccccccCC
Confidence            34788999999999984     4699999997 778888775   55555553  4555566665543    35567776


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .|-.+|
T Consensus       555 sD~tVR  560 (707)
T KOG0263|consen  555 SDRTVR  560 (707)
T ss_pred             CCceEE
Confidence            665554

>KOG1332|consensus

Probab=96.38  E-value=0.011  Score=43.94  Aligned_cols=74  Identities=19%  Similarity=0.320  Sum_probs=57.8

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC---CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG---SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~---~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      .|+|..=+-+||+.|-..- -....|+|+.+ +|.||....+.   ..++|..|     +..+|.++||..   |+ +|+
T Consensus       203 l~~H~dwVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-----~~~~w~vSWS~s---Gn-~La  272 (299)
T KOG1332|consen  203 LEGHKDWVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-----PDVVWRVSWSLS---GN-ILA  272 (299)
T ss_pred             hhhcchhhhhhhhccccCC-CceeeEEecCCCcEEEEEecCccCcccccccccC-----CcceEEEEEecc---cc-EEE
Confidence            4788888999999998753 35678999998 59999998653   26777776     456999999976   44 499


Q ss_pred             EecCCcEe
Q psy8253          80 VAGSRAVI   87 (88)
Q Consensus        80 ~aG~~G~I   87 (88)
                      ++|.+.+|
T Consensus       273 Vs~GdNkv  280 (299)
T KOG1332|consen  273 VSGGDNKV  280 (299)
T ss_pred             EecCCcEE
Confidence            99888776

>KOG0284|consensus

Probab=96.37  E-value=0.0028  Score=49.61  Aligned_cols=71  Identities=15%  Similarity=0.279  Sum_probs=56.9

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..||..|-+++|||..     +.++|.|.++ +.||+...   ++-|+.|+  .++.++-+++|....   .-||++||.
T Consensus       261 h~HKntVl~~~f~~n~-----N~Llt~skD~~~kv~DiR~---mkEl~~~r--~Hkkdv~~~~WhP~~---~~lftsgg~  327 (464)
T KOG0284|consen  261 HGHKNTVLAVKFNPNG-----NWLLTGSKDQSCKVFDIRT---MKELFTYR--GHKKDVTSLTWHPLN---ESLFTSGGS  327 (464)
T ss_pred             hhccceEEEEEEcCCC-----CeeEEccCCceEEEEehhH---hHHHHHhh--cchhhheeecccccc---ccceeeccC
Confidence            5799999999999954     6799999996 77777763   46677775  367889999999872   357999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|.
T Consensus       328 Dgsvv  332 (464)
T KOG0284|consen  328 DGSVV  332 (464)
T ss_pred             CCceE
Confidence            99873

>KOG0772|consensus

Probab=96.24  E-value=0.0087  Score=48.23  Aligned_cols=75  Identities=16%  Similarity=0.248  Sum_probs=54.8

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      -|-..+-+..|+|+.    .+.|-||+.+ .+.|+++.... .++|++.----...-..-+|+|+.|    .++||+|..
T Consensus       266 GHia~lt~g~whP~~----k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd----g~~iAagc~  337 (641)
T KOG0772|consen  266 GHIAELTCGCWHPDN----KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD----GKLIAAGCL  337 (641)
T ss_pred             CceeeeeccccccCc----ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC----cchhhhccc
Confidence            456677778888876    5679999998 59999998753 2444443222234566889999998    467999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|.
T Consensus       338 DGSIQ  342 (641)
T KOG0772|consen  338 DGSIQ  342 (641)
T ss_pred             CCcee
Confidence            99984

>KOG0319|consensus

Probab=96.02  E-value=0.033  Score=46.24  Aligned_cols=71  Identities=14%  Similarity=0.307  Sum_probs=58.3

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ..-|...|.+|+.+|.     +.++||++-++ +.|.++++   +.++...+  .+...+++|..|+.    +++||+++
T Consensus       459 ~~aHdKdIN~Vaia~n-----dkLiAT~SqDktaKiW~le~---~~l~~vLs--GH~RGvw~V~Fs~~----dq~laT~S  524 (775)
T KOG0319|consen  459 ERAHDKDINCVAIAPN-----DKLIATGSQDKTAKIWDLEQ---LRLLGVLS--GHTRGVWCVSFSKN----DQLLATCS  524 (775)
T ss_pred             HHhhcccccceEecCC-----CceEEecccccceeeecccC---ceEEEEee--CCccceEEEEeccc----cceeEecc
Confidence            3457888999999884     46799999997 89999994   46666664  58899999999976    68899999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .|..||
T Consensus       525 gD~TvK  530 (775)
T KOG0319|consen  525 GDKTVK  530 (775)
T ss_pred             CCceEE
Confidence            999886

>KOG2394|consensus

Probab=95.95  E-value=0.0079  Score=48.57  Aligned_cols=64  Identities=16%  Similarity=0.363  Sum_probs=47.5

Q ss_pred             CeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253          10 PLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        10 ~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      +|-.-+|+|     +.+.+|+|+.+ .+.|+......=+.++++|-     -.+-||+||.|    -.+||+||+|-.|
T Consensus       292 ~in~f~FS~-----DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-----GGLLCvcWSPD----GKyIvtGGEDDLV  356 (636)
T KOG2394|consen  292 SINEFAFSP-----DGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-----GGLLCVCWSPD----GKYIVTGGEDDLV  356 (636)
T ss_pred             cccceeEcC-----CCceEEEEecCceEEEeeccHHHHHHHHHhhc-----cceEEEEEcCC----ccEEEecCCcceE
Confidence            344444544     46889999988 58899988764456678883     45899999999    3569999998654

>KOG1009|consensus

Probab=95.94  E-value=0.032  Score=43.62  Aligned_cols=73  Identities=16%  Similarity=0.207  Sum_probs=46.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcC------CCC-----CeeEEEEEEcCCCCCceeEEEEeecCC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECP------DGG-----SIKLLQCYADPDIEENFYTCAWSMDLE   72 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~------~~~-----~~~~l~~~~d~d~~e~~y~~aWs~d~~   72 (88)
                      ..|.+.+.+|.|+|-     ..+.|++|.++ |.+..-.      .+.     +-.-+....+..+.++.|..+|+.|  
T Consensus        62 s~H~~aVN~vRf~p~-----gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d--  134 (434)
T KOG1009|consen   62 SRHTRAVNVVRFSPD-----GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD--  134 (434)
T ss_pred             cCCcceeEEEEEcCC-----cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC--
Confidence            568889999999994     35688888876 5555544      111     1112223333357899999999988  


Q ss_pred             CCceEEEEecCCcE
Q psy8253          73 SGRPLLAVAGSRAV   86 (88)
Q Consensus        73 ~~~plLa~aG~~G~   86 (88)
                        ...|++|+.+..
T Consensus       135 --~~~l~s~s~dns  146 (434)
T KOG1009|consen  135 --SNFLVSGSVDNS  146 (434)
T ss_pred             --Cceeeeeeccce
Confidence              233566655544

>KOG0273|consensus

Probab=95.93  E-value=0.068  Score=42.64  Aligned_cols=74  Identities=14%  Similarity=0.286  Sum_probs=58.7

Q ss_pred             ccCCCCeEEEEEecCCC----CCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           5 EDHGQPLFGAQFNHLLK----DDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~----~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      +.|.+.||..+++|-.+    +....+.|+++.+. |.+|.....   ..|..+.  ++.|.+|+++.+.+    .-+||
T Consensus       398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~--kH~~pVysvafS~~----g~ylA  468 (524)
T KOG0273|consen  398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLM--KHQEPVYSVAFSPN----GRYLA  468 (524)
T ss_pred             hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeec--cCCCceEEEEecCC----CcEEE
Confidence            56888999999999765    34567888888884 999998876   4444554  58999999999977    34599


Q ss_pred             EecCCcEe
Q psy8253          80 VAGSRAVI   87 (88)
Q Consensus        80 ~aG~~G~I   87 (88)
                      .|..+|.|
T Consensus       469 sGs~dg~V  476 (524)
T KOG0273|consen  469 SGSLDGCV  476 (524)
T ss_pred             ecCCCCee
Confidence            99999876

>KOG0641|consensus

Probab=95.86  E-value=0.072  Score=39.64  Aligned_cols=69  Identities=23%  Similarity=0.356  Sum_probs=44.4

Q ss_pred             CCeEEEEEecCCCCCCCCEEEEeCCCe--EEEEEcCC--C---------CCeeEEEEEEcCCCCCceeEEEEeecCCCCc
Q psy8253           9 QPLFGAQFNHLLKDDQPRIFATVGSNR--VSIYECPD--G---------GSIKLLQCYADPDIEENFYTCAWSMDLESGR   75 (88)
Q Consensus         9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~--v~Vy~~~~--~---------~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~   75 (88)
                      +.|-+|+|.|-..      +-.||.|.  ..||.-+.  +         .|-. +..=+.+.+.-++||.|||.+    -
T Consensus        33 qairav~fhp~g~------lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~-v~~kr~khhkgsiyc~~ws~~----g  101 (350)
T KOG0641|consen   33 QAIRAVAFHPAGG------LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS-VLCKRNKHHKGSIYCTAWSPC----G  101 (350)
T ss_pred             hheeeEEecCCCc------eEEeccCCceEEEEccccccCcccccccccCCCe-EEeeeccccCccEEEEEecCc----c
Confidence            5788999988543      33456663  44554443  1         1112 222344568899999999988    3


Q ss_pred             eEEEEecCCcEeC
Q psy8253          76 PLLAVAGSRAVIR   88 (88)
Q Consensus        76 plLa~aG~~G~Ir   88 (88)
                      .|||+|+.+-.||
T Consensus       102 eliatgsndk~ik  114 (350)
T KOG0641|consen  102 ELIATGSNDKTIK  114 (350)
T ss_pred             CeEEecCCCceEE
Confidence            5799999887775

>KOG1445|consensus

Probab=95.82  E-value=0.028  Score=46.69  Aligned_cols=74  Identities=20%  Similarity=0.439  Sum_probs=52.1

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-------CeeEEE----------------------EEE--
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-------SIKLLQ----------------------CYA--   54 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-------~~~~l~----------------------~~~--   54 (88)
                      .+..+-+.+++||++.   + +|+.+.+ +|.+++++.+|       +-++|.                      +|.  
T Consensus       626 Ngt~vtDl~WdPFD~~---r-LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T  701 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDE---R-LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST  701 (1012)
T ss_pred             cCceeeecccCCCChH---H-eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence            4677889999999852   3 5555544 89999998864       122222                      110  


Q ss_pred             --------------cCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          55 --------------DPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        55 --------------d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                                    --.+.+.++.+|||.|   |+. ||+-|+||.||
T Consensus       702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpd---Gr~-~AtVcKDg~~r  745 (1012)
T KOG1445|consen  702 IELWDLANAKLYSRLVGHTDQIFGIAWSPD---GRR-IATVCKDGTLR  745 (1012)
T ss_pred             eeeeehhhhhhhheeccCcCceeEEEECCC---Ccc-eeeeecCceEE
Confidence                          0257889999999998   444 99999999986

>KOG0272|consensus

Probab=95.82  E-value=0.027  Score=44.27  Aligned_cols=72  Identities=14%  Similarity=0.177  Sum_probs=48.5

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|-.+||+|+|+|.-     ...||.|++. +.|+++.....+-+|     +.+...+-.|..+++  .| -.|++||
T Consensus       341 L~gH~k~I~~V~fsPNG-----y~lATgs~Dnt~kVWDLR~r~~ly~i-----pAH~nlVS~Vk~~p~--~g-~fL~Tas  407 (459)
T KOG0272|consen  341 LAGHIKEILSVAFSPNG-----YHLATGSSDNTCKVWDLRMRSELYTI-----PAHSNLVSQVKYSPQ--EG-YFLVTAS  407 (459)
T ss_pred             ecccccceeeEeECCCc-----eEEeecCCCCcEEEeeecccccceec-----ccccchhhheEeccc--CC-eEEEEcc
Confidence            46699999999999954     4599999884 889999887543222     334444555665553  33 3477777


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .|+.+|
T Consensus       408 yD~t~k  413 (459)
T KOG0272|consen  408 YDNTVK  413 (459)
T ss_pred             cCccee
Confidence            776654

>KOG0315|consensus

Probab=95.81  E-value=0.11  Score=38.82  Aligned_cols=71  Identities=24%  Similarity=0.333  Sum_probs=53.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +-|...+-.|.|+|-     ...+||||.++ |.|++....  +++-....  .++.-++.|+.|.|    ..+|++||.
T Consensus       212 ~ah~~~il~C~lSPd-----~k~lat~ssdktv~iwn~~~~--~kle~~l~--gh~rWvWdc~FS~d----g~YlvTass  278 (311)
T KOG0315|consen  212 QAHNGHILRCLLSPD-----VKYLATCSSDKTVKIWNTDDF--FKLELVLT--GHQRWVWDCAFSAD----GEYLVTASS  278 (311)
T ss_pred             ecccceEEEEEECCC-----CcEEEeecCCceEEEEecCCc--eeeEEEee--cCCceEEeeeeccC----ccEEEecCC
Confidence            457778888888883     56799999996 899988775  45544442  35677889999977    467999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      |+..|
T Consensus       279 d~~~r  283 (311)
T KOG0315|consen  279 DHTAR  283 (311)
T ss_pred             CCcee
Confidence            98765

>KOG0268|consensus

Probab=95.66  E-value=0.017  Score=44.93  Aligned_cols=74  Identities=16%  Similarity=0.328  Sum_probs=54.4

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      .++.+|...+-+|.|+|-...     |++.+=+ .|.||.....-.=.   .|.- .....+++|.||.|    ...|.+
T Consensus       266 ~v~~dhvsAV~dVdfsptG~E-----fvsgsyDksIRIf~~~~~~SRd---iYht-kRMq~V~~Vk~S~D----skyi~S  332 (433)
T KOG0268|consen  266 NVHKDHVSAVMDVDFSPTGQE-----FVSGSYDKSIRIFPVNHGHSRD---IYHT-KRMQHVFCVKYSMD----SKYIIS  332 (433)
T ss_pred             hhhcccceeEEEeccCCCcch-----hccccccceEEEeecCCCcchh---hhhH-hhhheeeEEEEecc----ccEEEe
Confidence            356899999999999996543     7777766 48899887752111   1111 24667999999998    577999


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      |+.+|.||
T Consensus       333 GSdd~nvR  340 (433)
T KOG0268|consen  333 GSDDGNVR  340 (433)
T ss_pred             cCCCccee
Confidence            99999886

>KOG0271|consensus

Probab=95.61  E-value=0.1  Score=40.96  Aligned_cols=75  Identities=15%  Similarity=0.181  Sum_probs=59.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ..-|+..|-+.+|.|.......+.+|+.+++ .|.|++....  ..++-.+   .+...+-|+.|-     |.-||.+|+
T Consensus       196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~--~~~~~ls---gHT~~VTCvrwG-----G~gliySgS  265 (480)
T KOG0271|consen  196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG--TCVRTLS---GHTASVTCVRWG-----GEGLIYSGS  265 (480)
T ss_pred             ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc--eEEEEec---cCccceEEEEEc-----CCceEEecC
Confidence            3568999999999998765567799999988 5999998875  2333333   588999999996     456899999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .|+.||
T Consensus       266 ~DrtIk  271 (480)
T KOG0271|consen  266 QDRTIK  271 (480)
T ss_pred             CCceEE
Confidence            999986

>KOG1310|consensus

Probab=95.60  E-value=0.025  Score=46.15  Aligned_cols=77  Identities=18%  Similarity=0.253  Sum_probs=47.4

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec--------CC
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD--------LE   72 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d--------~~   72 (88)
                      .|...|-++||+++|=|+.   .+.++++..++ .|++|.+.....       .-.|++-+--+-.|+.-        +.
T Consensus        87 sI~TgHtaNIFsvKFvP~t---nnriv~sgAgDk~i~lfdl~~~~~-------~~~d~~~~~~~~~~~cht~rVKria~~  156 (758)
T KOG1310|consen   87 SISTGHTANIFSVKFVPYT---NNRIVLSGAGDKLIKLFDLDSSKE-------GGMDHGMEETTRCWSCHTDRVKRIATA  156 (758)
T ss_pred             eeecccccceeEEeeeccC---CCeEEEeccCcceEEEEecccccc-------cccccCccchhhhhhhhhhhhhheecC
Confidence            4677899999999999988   35666666665 699999985210       00022222223334332        11


Q ss_pred             -CCceEEEEecCCcEeC
Q psy8253          73 -SGRPLLAVAGSRAVIR   88 (88)
Q Consensus        73 -~~~plLa~aG~~G~Ir   88 (88)
                       ++-...-+|++||.||
T Consensus       157 p~~PhtfwsasEDGtir  173 (758)
T KOG1310|consen  157 PNGPHTFWSASEDGTIR  173 (758)
T ss_pred             CCCCceEEEecCCccee
Confidence             2224577888899886

>KOG2111|consensus

Probab=95.59  E-value=0.16  Score=38.77  Aligned_cols=71  Identities=24%  Similarity=0.366  Sum_probs=52.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe--EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR--VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~--v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ..|...|-.++-|-     +.-++||++.+.  |.|+.-..+   +.|+.++-.-...++|++|.|.+    ..+||+++
T Consensus       178 ~AH~s~Iacv~Ln~-----~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp~----~s~LavsS  245 (346)
T KOG2111|consen  178 NAHDSDIACVALNL-----QGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSPN----SSWLAVSS  245 (346)
T ss_pred             EcccCceeEEEEcC-----CccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCCC----ccEEEEEc
Confidence            45666777777664     456799999886  777776666   45555544445788999999987    57899999


Q ss_pred             CCcEe
Q psy8253          83 SRAVI   87 (88)
Q Consensus        83 ~~G~I   87 (88)
                      ..|.|
T Consensus       246 dKgTl  250 (346)
T KOG2111|consen  246 DKGTL  250 (346)
T ss_pred             CCCeE
Confidence            99986

>KOG0645|consensus

Probab=95.59  E-value=0.14  Score=38.58  Aligned_cols=75  Identities=15%  Similarity=0.248  Sum_probs=59.5

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      ..|-|..++=+|+|++     ....+|||+-++ |-|.+...++.++.+....  ++..++=-|.|-+.    .-||+++
T Consensus       100 ~lEGHEnEVK~Vaws~-----sG~~LATCSRDKSVWiWe~deddEfec~aVL~--~HtqDVK~V~WHPt----~dlL~S~  168 (312)
T KOG0645|consen  100 TLEGHENEVKCVAWSA-----SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ--EHTQDVKHVIWHPT----EDLLFSC  168 (312)
T ss_pred             eeeccccceeEEEEcC-----CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec--cccccccEEEEcCC----cceeEEe
Confidence            3588999999999997     356799999885 9999999887766665554  46777888999765    3478999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      +.|..||
T Consensus       169 SYDnTIk  175 (312)
T KOG0645|consen  169 SYDNTIK  175 (312)
T ss_pred             ccCCeEE
Confidence            9888876

>KOG0293|consensus

Probab=95.58  E-value=0.085  Score=41.79  Aligned_cols=62  Identities=19%  Similarity=0.239  Sum_probs=51.3

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD   70 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d   70 (88)
                      ++.++|..++|=++|+|.     ...+|+..++. +.|++...++.+++.+...  .+...+--+.||+|
T Consensus       218 qil~~htdEVWfl~FS~n-----GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv--gh~~~V~yi~wSPD  280 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHN-----GKYLASASKDSTAIIWIVVYDVHFKLKKTLV--GHSQPVSYIMWSPD  280 (519)
T ss_pred             hhHhhCCCcEEEEEEcCC-----CeeEeeccCCceEEEEEEecCcceeeeeeee--cccCceEEEEECCC
Confidence            567899999999999984     45699999995 7888888887788877665  46777888999998

>KOG1273|consensus

Probab=95.56  E-value=0.031  Score=42.96  Aligned_cols=65  Identities=20%  Similarity=0.232  Sum_probs=45.1

Q ss_pred             eEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          11 LFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        11 ~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      --+|+||+...    -+..=|.++||.||++.+-+.-.+|.+     +--.+.+++||.|   | .+|.+++.|-+|+
T Consensus        26 a~~~~Fs~~G~----~lAvGc~nG~vvI~D~~T~~iar~lsa-----H~~pi~sl~WS~d---g-r~LltsS~D~si~   90 (405)
T KOG1273|consen   26 AECCQFSRWGD----YLAVGCANGRVVIYDFDTFRIARMLSA-----HVRPITSLCWSRD---G-RKLLTSSRDWSIK   90 (405)
T ss_pred             cceEEeccCcc----eeeeeccCCcEEEEEccccchhhhhhc-----cccceeEEEecCC---C-CEeeeecCCceeE
Confidence            56899998652    233446778999999999753333433     3445889999998   3 4588888877663

>KOG0973|consensus

Probab=95.45  E-value=0.044  Score=46.67  Aligned_cols=74  Identities=19%  Similarity=0.323  Sum_probs=50.7

Q ss_pred             cCCCCeEEEEEecCCCCCCCC------------EEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPR------------IFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLE   72 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~------------~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~   72 (88)
                      -|..|+=.|+|||..-.+...            +.|+-+.+| +.|+--..-.|+-+++..    .+.++-+.+||.|  
T Consensus       263 GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l----f~~SI~DmsWspd--  336 (942)
T KOG0973|consen  263 GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL----FNKSIVDMSWSPD--  336 (942)
T ss_pred             cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh----hcCceeeeeEcCC--
Confidence            477899999999975322222            444444444 888887666677776655    4677888999998  


Q ss_pred             CCceEEEEecCCcEe
Q psy8253          73 SGRPLLAVAGSRAVI   87 (88)
Q Consensus        73 ~~~plLa~aG~~G~I   87 (88)
                       |.- |-+.+.||.|
T Consensus       337 -G~~-LfacS~DGtV  349 (942)
T KOG0973|consen  337 -GFS-LFACSLDGTV  349 (942)
T ss_pred             -CCe-EEEEecCCeE
Confidence             455 6666777776

>KOG0265|consensus

Probab=95.41  E-value=0.14  Score=39.04  Aligned_cols=72  Identities=17%  Similarity=0.282  Sum_probs=52.3

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCC-CCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDG-GSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~-~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      ++.-|+..||-++|+|     +...||+-|-+| |.+++.-.+ +|..+++     .+...+-.+.|+.|   ++. |.+
T Consensus        42 ~l~gh~geI~~~~F~P-----~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-----gHsgAVM~l~~~~d---~s~-i~S  107 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHP-----DGSCFASGGSDRAIVLWNVYGDCENFWVLK-----GHSGAVMELHGMRD---GSH-ILS  107 (338)
T ss_pred             hcCCCcceEEEEEECC-----CCCeEeecCCcceEEEEeccccccceeeec-----cccceeEeeeeccC---CCE-EEE
Confidence            4577999999999999     257899999997 777775544 3455555     45667778899987   355 667


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      +|.|-+|+
T Consensus       108 ~gtDk~v~  115 (338)
T KOG0265|consen  108 CGTDKTVR  115 (338)
T ss_pred             ecCCceEE
Confidence            77766553

>KOG1009|consensus

Probab=95.25  E-value=0.15  Score=40.04  Aligned_cols=73  Identities=18%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC----eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS----IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      ...|+|.+-|-+....    .+||+|++ .|.|.+++.+.+    .++.-.=.-..+..++.+|-|+.+.    -|||+|
T Consensus        12 ~~~pv~s~dfq~n~~~----~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g----elLASg   83 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLN----KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG----ELLASG   83 (434)
T ss_pred             CCCceEEEEeccCccc----ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc----Ceeeec
Confidence            4569999999886632    89999999 499999886432    3333322334578899999999872    469999


Q ss_pred             cCCcEe
Q psy8253          82 GSRAVI   87 (88)
Q Consensus        82 G~~G~I   87 (88)
                      |.+|.|
T Consensus        84 ~D~g~v   89 (434)
T KOG1009|consen   84 GDGGEV   89 (434)
T ss_pred             CCCceE
Confidence            998876

>KOG0276|consensus

Probab=95.17  E-value=0.13  Score=42.56  Aligned_cols=76  Identities=18%  Similarity=0.262  Sum_probs=59.6

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      +..|.|..=+..++|||-+    +..||++.=+| |.|+++....+...|+     .++..+.++..=.-  ..+|+|++
T Consensus       134 qtfeGH~HyVMqv~fnPkD----~ntFaS~sLDrTVKVWslgs~~~nfTl~-----gHekGVN~Vdyy~~--gdkpylIs  202 (794)
T KOG0276|consen  134 QTFEGHEHYVMQVAFNPKD----PNTFASASLDRTVKVWSLGSPHPNFTLE-----GHEKGVNCVDYYTG--GDKPYLIS  202 (794)
T ss_pred             eEEcCcceEEEEEEecCCC----ccceeeeeccccEEEEEcCCCCCceeee-----ccccCcceEEeccC--CCcceEEe
Confidence            4578899999999999965    56799999887 9999999875544444     46777888865433  56899999


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      |+.|-.||
T Consensus       203 gaDD~tiK  210 (794)
T KOG0276|consen  203 GADDLTIK  210 (794)
T ss_pred             cCCCceEE
Confidence            99988775

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=94.94  E-value=0.33  Score=33.58  Aligned_cols=60  Identities=22%  Similarity=0.346  Sum_probs=39.9

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeC----CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVG----SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG----~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      +..+.-.+.|+|.     .+.+|++|    .+.+.+|+...   .+.|..+.    ....-.++|+.|   |+- |+++.
T Consensus        99 ~~~~~n~i~wsP~-----G~~l~~~g~~n~~G~l~~wd~~~---~~~i~~~~----~~~~t~~~WsPd---Gr~-~~ta~  162 (194)
T PF08662_consen   99 GTQPRNTISWSPD-----GRFLVLAGFGNLNGDLEFWDVRK---KKKISTFE----HSDATDVEWSPD---GRY-LATAT  162 (194)
T ss_pred             cCCCceEEEECCC-----CCEEEEEEccCCCcEEEEEECCC---CEEeeccc----cCcEEEEEEcCC---CCE-EEEEE
Confidence            4456677888884     34677776    23589999985   36777663    234678999988   555 44444

>KOG0315|consensus

Probab=94.78  E-value=0.11  Score=38.83  Aligned_cols=58  Identities=10%  Similarity=0.280  Sum_probs=48.8

Q ss_pred             CCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          24 QPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        24 ~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      +...+|+.|..+|.+|++..+.+ ..+..|.  .+..++-+|..-+|    ...+.+||+||.+|
T Consensus        51 dk~~LAaa~~qhvRlyD~~S~np-~Pv~t~e--~h~kNVtaVgF~~d----grWMyTgseDgt~k  108 (311)
T KOG0315|consen   51 DKKDLAAAGNQHVRLYDLNSNNP-NPVATFE--GHTKNVTAVGFQCD----GRWMYTGSEDGTVK  108 (311)
T ss_pred             CcchhhhccCCeeEEEEccCCCC-CceeEEe--ccCCceEEEEEeec----CeEEEecCCCceEE
Confidence            56778999999999999999865 4777784  46789999999888    46799999999986

>KOG0279|consensus

Probab=94.50  E-value=0.25  Score=37.32  Aligned_cols=68  Identities=15%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      ..=+-.|.|.|..   .+++++.+|-++ |.|..+..   +++.+.|.  .+.-.+.+|+-|+|    -.|++.||++|.
T Consensus       148 ~~WVscvrfsP~~---~~p~Ivs~s~DktvKvWnl~~---~~l~~~~~--gh~~~v~t~~vSpD----GslcasGgkdg~  215 (315)
T KOG0279|consen  148 REWVSCVRFSPNE---SNPIIVSASWDKTVKVWNLRN---CQLRTTFI--GHSGYVNTVTVSPD----GSLCASGGKDGE  215 (315)
T ss_pred             cCcEEEEEEcCCC---CCcEEEEccCCceEEEEccCC---cchhhccc--cccccEEEEEECCC----CCEEecCCCCce
Confidence            5668899999965   588999999986 88888765   58888775  47888999999988    356889999997


Q ss_pred             e
Q psy8253          87 I   87 (88)
Q Consensus        87 I   87 (88)
                      +
T Consensus       216 ~  216 (315)
T KOG0279|consen  216 A  216 (315)
T ss_pred             E
Confidence            6

>KOG1332|consensus

Probab=94.42  E-value=0.12  Score=38.64  Aligned_cols=76  Identities=21%  Similarity=0.358  Sum_probs=57.3

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      .-|..|++-|+|-.   |....++|.|.=++ |.|.+=...   .--|.|...++..++.+++|..-..  -.+||+|+.
T Consensus        53 ~Gh~GPVwqv~wah---Pk~G~iLAScsYDgkVIiWke~~g---~w~k~~e~~~h~~SVNsV~waphey--gl~LacasS  124 (299)
T KOG1332|consen   53 TGHSGPVWKVAWAH---PKFGTILASCSYDGKVIIWKEENG---RWTKAYEHAAHSASVNSVAWAPHEY--GLLLACASS  124 (299)
T ss_pred             cCCCCCeeEEeecc---cccCcEeeEeecCceEEEEecCCC---chhhhhhhhhhcccceeeccccccc--ceEEEEeeC
Confidence            45788999998854   33567899999774 777775543   3345566667899999999998733  578999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      ||.|+
T Consensus       125 DG~vs  129 (299)
T KOG1332|consen  125 DGKVS  129 (299)
T ss_pred             CCcEE
Confidence            99884

>KOG0647|consensus

Probab=94.35  E-value=0.13  Score=39.27  Aligned_cols=70  Identities=16%  Similarity=0.244  Sum_probs=46.7

Q ss_pred             CCCeEEEEEecCCCCCCCCEE-EEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIF-ATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~f-AtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      ...|-+++|+| .   ...++ |.-=.+.|.||++..+|-...-...   ..+.-+.+|+|+.|   | .++.+||-|+.
T Consensus        27 ~DsIS~l~FSP-~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~---~~~~PvL~v~Wsdd---g-skVf~g~~Dk~   95 (347)
T KOG0647|consen   27 EDSISALAFSP-Q---ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ---SHDGPVLDVCWSDD---G-SKVFSGGCDKQ   95 (347)
T ss_pred             ccchheeEecc-c---cCceEEecccCCceEEEEEecCCcccchhhh---ccCCCeEEEEEccC---C-ceEEeeccCCc
Confidence            34678899999 2   22333 4444568999999997533321122   35777999999988   3 45888888876


Q ss_pred             eC
Q psy8253          87 IR   88 (88)
Q Consensus        87 Ir   88 (88)
                      +|
T Consensus        96 ~k   97 (347)
T KOG0647|consen   96 AK   97 (347)
T ss_pred             eE
Confidence            54

>KOG0293|consensus

Probab=94.28  E-value=0.12  Score=40.91  Aligned_cols=70  Identities=23%  Similarity=0.438  Sum_probs=48.8

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeE-EEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRV-SIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v-~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..|+--+.|+|     +++.+.+||...+ ...+..++   .....|... .+-++-+|+|++|   |.. +++|+.
T Consensus       266 vgh~~~V~yi~wSP-----DdryLlaCg~~e~~~lwDv~tg---d~~~~y~~~-~~~S~~sc~W~pD---g~~-~V~Gs~  332 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSP-----DDRYLLACGFDEVLSLWDVDTG---DLRHLYPSG-LGFSVSSCAWCPD---GFR-FVTGSP  332 (519)
T ss_pred             ecccCceEEEEECC-----CCCeEEecCchHheeeccCCcc---hhhhhcccC-cCCCcceeEEccC---Cce-eEecCC
Confidence            66778888888887     3566888998864 33444443   555666543 5788999999999   344 788888


Q ss_pred             CcEe
Q psy8253          84 RAVI   87 (88)
Q Consensus        84 ~G~I   87 (88)
                      |+.|
T Consensus       333 dr~i  336 (519)
T KOG0293|consen  333 DRTI  336 (519)
T ss_pred             CCcE
Confidence            7765

>KOG0301|consensus

Probab=94.24  E-value=0.22  Score=41.34  Aligned_cols=66  Identities=20%  Similarity=0.376  Sum_probs=46.5

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .|..-+|++.   +.  ...+++++||.+| +.|+.-.     +.+|.+..|.      ++.|+.......- |++||.|
T Consensus       217 ghtn~vYsis---~~--~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lPt------tsiWsa~~L~NgD-Ivvg~SD  279 (745)
T KOG0301|consen  217 GHTNFVYSIS---MA--LSDGLIVSTGEDRTLRIWKKD-----ECVQVITLPT------TSIWSAKVLLNGD-IVVGGSD  279 (745)
T ss_pred             ccceEEEEEE---ec--CCCCeEEEecCCceEEEeecC-----ceEEEEecCc------cceEEEEEeeCCC-EEEeccC
Confidence            3444567766   22  3578999999997 8888755     7778887652      3778877442223 8999999


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |+||
T Consensus       280 G~Vr  283 (745)
T KOG0301|consen  280 GRVR  283 (745)
T ss_pred             ceEE
Confidence            9997

>KOG1274|consensus

Probab=94.19  E-value=0.37  Score=41.05  Aligned_cols=76  Identities=20%  Similarity=0.301  Sum_probs=49.9

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC------------------------------------
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG------------------------------------   45 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~------------------------------------   45 (88)
                      ..+.|+.|+-++.|+|-.     ..+|+...+ .|+||++....                                    
T Consensus       133 ~lrgh~apVl~l~~~p~~-----~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~  207 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKG-----NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP  207 (933)
T ss_pred             eecccCCceeeeeEcCCC-----CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence            457899999999999843     334444433 57777765420                                    


Q ss_pred             -----------CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253          46 -----------SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        46 -----------~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                                 +-+++..++|.+..-.|.+++|+.-   | .+||+++.+|.|
T Consensus       208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn---G-~YiAAs~~~g~I  256 (933)
T KOG1274|consen  208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN---G-KYIAASTLDGQI  256 (933)
T ss_pred             cCCeEEEEccCCceeheeecccccccceEEEEEcCC---C-cEEeeeccCCcE
Confidence                       0022224555555555999999976   3 469999999976

>KOG0307|consensus

Probab=94.16  E-value=0.054  Score=46.54  Aligned_cols=73  Identities=15%  Similarity=0.288  Sum_probs=55.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCC-CCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDG-GSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~-~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +.+|..+|-++.|||+.    ..+.|..+++ .|.|++|..- .+...-    .....+++-+++|....   .++||+|
T Consensus       112 ~~~h~G~V~gLDfN~~q----~nlLASGa~~geI~iWDlnn~~tP~~~~----~~~~~~eI~~lsWNrkv---qhILAS~  180 (1049)
T KOG0307|consen  112 KSKHTGPVLGLDFNPFQ----GNLLASGADDGEILIWDLNKPETPFTPG----SQAPPSEIKCLSWNRKV---SHILASG  180 (1049)
T ss_pred             hcccCCceeeeeccccC----CceeeccCCCCcEEEeccCCcCCCCCCC----CCCCcccceEeccchhh---hHHhhcc
Confidence            57899999999999987    4678888888 5999999863 232222    22468899999999873   4678888


Q ss_pred             cCCcEe
Q psy8253          82 GSRAVI   87 (88)
Q Consensus        82 G~~G~I   87 (88)
                      +.+|.+
T Consensus       181 s~sg~~  186 (1049)
T KOG0307|consen  181 SPSGRA  186 (1049)
T ss_pred             CCCCCc
Confidence            888753

>KOG0284|consensus

Probab=94.10  E-value=0.1  Score=41.13  Aligned_cols=69  Identities=13%  Similarity=0.263  Sum_probs=51.3

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      -|...|-+++|+|-     +..|++|..+ +|.|.....-.+-.+|     ..+.-++-+|.|-..    +-|||+||.+
T Consensus       178 hh~eaIRdlafSpn-----DskF~t~SdDg~ikiWdf~~~kee~vL-----~GHgwdVksvdWHP~----kgLiasgskD  243 (464)
T KOG0284|consen  178 HHAEAIRDLAFSPN-----DSKFLTCSDDGTIKIWDFRMPKEERVL-----RGHGWDVKSVDWHPT----KGLIASGSKD  243 (464)
T ss_pred             hhhhhhheeccCCC-----CceeEEecCCCeEEEEeccCCchhhee-----ccCCCCcceeccCCc----cceeEEccCC
Confidence            34478899999993     4569999988 5777776554333444     257888999999876    6789999998


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      ..||
T Consensus       244 nlVK  247 (464)
T KOG0284|consen  244 NLVK  247 (464)
T ss_pred             ceeE
Confidence            8765

>KOG0641|consensus

Probab=93.68  E-value=0.49  Score=35.32  Aligned_cols=70  Identities=19%  Similarity=0.252  Sum_probs=47.8

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCC----eeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGS----IKLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      .-|+..||+++++|     ..++.||=+++. |.+.+++.+..    -++....    ++-.+-+.|+-.+++++..+|+
T Consensus        86 khhkgsiyc~~ws~-----~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm----hdgtirdl~fld~~~s~~~il~  156 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSP-----CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM----HDGTIRDLAFLDDPESGGAILA  156 (350)
T ss_pred             cccCccEEEEEecC-----ccCeEEecCCCceEEEEecccccccccCcceeeee----cCCceeeeEEecCCCcCceEEE
Confidence            45888999999998     356788766664 77777776521    1222333    3445666788888888888888


Q ss_pred             EecC
Q psy8253          80 VAGS   83 (88)
Q Consensus        80 ~aG~   83 (88)
                      .||.
T Consensus       157 s~ga  160 (350)
T KOG0641|consen  157 SAGA  160 (350)
T ss_pred             ecCC
Confidence            8774

>KOG0279|consensus

Probab=93.64  E-value=0.52  Score=35.65  Aligned_cols=75  Identities=13%  Similarity=0.216  Sum_probs=47.4

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC--eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN--RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~--~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      +..+-|..-+-+|+|+|-..    |+  +-|..  -+.++....+  ++.  ...+..+.+-+.|+.|++.  +.+|+|+
T Consensus        99 ~~f~GH~~dVlsva~s~dn~----qi--vSGSrDkTiklwnt~g~--ck~--t~~~~~~~~WVscvrfsP~--~~~p~Iv  166 (315)
T KOG0279|consen   99 RRFVGHTKDVLSVAFSTDNR----QI--VSGSRDKTIKLWNTLGV--CKY--TIHEDSHREWVSCVRFSPN--ESNPIIV  166 (315)
T ss_pred             EEEEecCCceEEEEecCCCc----ee--ecCCCcceeeeeeeccc--EEE--EEecCCCcCcEEEEEEcCC--CCCcEEE
Confidence            34578899999999998543    22  11221  1333332221  111  1222233889999999987  4589999


Q ss_pred             EecCCcEeC
Q psy8253          80 VAGSRAVIR   88 (88)
Q Consensus        80 ~aG~~G~Ir   88 (88)
                      .+|.|+.+|
T Consensus       167 s~s~DktvK  175 (315)
T KOG0279|consen  167 SASWDKTVK  175 (315)
T ss_pred             EccCCceEE
Confidence            999999886

>KOG0290|consensus

Probab=93.28  E-value=0.43  Score=36.46  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=55.9

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCC-Ce---------------eEEEEE--------------E
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGG-SI---------------KLLQCY--------------A   54 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~-~~---------------~~l~~~--------------~   54 (88)
                      -+|-.|.-.+.|+|-.....++++||.| +.+.++|..++. ++               ..|-+|              .
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            3677888889999977655678888875 677888877532 11               111111              0


Q ss_pred             c--------------------CCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          55 D--------------------PDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        55 d--------------------~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      |                    =-++.++|+++|...   +..+.|+-|.||.+|
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~---s~~~FASvgaDGSvR  222 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG---SRDVFASVGADGSVR  222 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccC---ccceEEEecCCCcEE
Confidence            0                    036889999999985   567799999999987

>KOG0647|consensus

Probab=93.26  E-value=0.88  Score=34.82  Aligned_cols=73  Identities=14%  Similarity=0.377  Sum_probs=54.6

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ...|..|+.+|.|+-    +.+.+|+....+.+.++++..+   ++.|.-   -++..+-+|.|-.-.  ..++|++|+-
T Consensus        68 ~~~~~~PvL~v~Wsd----dgskVf~g~~Dk~~k~wDL~S~---Q~~~v~---~Hd~pvkt~~wv~~~--~~~cl~TGSW  135 (347)
T KOG0647|consen   68 QQSHDGPVLDVCWSD----DGSKVFSGGCDKQAKLWDLASG---QVSQVA---AHDAPVKTCHWVPGM--NYQCLVTGSW  135 (347)
T ss_pred             hhccCCCeEEEEEcc----CCceEEeeccCCceEEEEccCC---Ceeeee---ecccceeEEEEecCC--CcceeEeccc
Confidence            467889999999985    2488999999999999999997   333333   356678888887652  2677888877


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      |-.||
T Consensus       136 DKTlK  140 (347)
T KOG0647|consen  136 DKTLK  140 (347)
T ss_pred             cccee
Confidence            76664

>KOG1063|consensus

Probab=93.22  E-value=0.25  Score=41.09  Aligned_cols=77  Identities=19%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCc-eEEEEec
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGR-PLLAVAG   82 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~-plLa~aG   82 (88)
                      +.|..=||+|.|+|+..-     |||++-+ .|.|++.+.+.. +-+..+.-.+..+.+-+++|..-.-+.. -++++|=
T Consensus       615 k~HtRIIWdcsW~pde~~-----FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl  688 (764)
T KOG1063|consen  615 KAHTRIIWDCSWSPDEKY-----FATASRDKKVKVWEEPDLRD-KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL  688 (764)
T ss_pred             cccceEEEEcccCcccce-----eEEecCCceEEEEeccCchh-hhhhhhchhccCCceeeEEeeccccccccceEEEEe
Confidence            578889999999997642     9999988 499999988732 3333333346789999999997633333 3678888


Q ss_pred             CCcEe
Q psy8253          83 SRAVI   87 (88)
Q Consensus        83 ~~G~I   87 (88)
                      +.|.|
T Consensus       689 e~GeI  693 (764)
T KOG1063|consen  689 EKGEI  693 (764)
T ss_pred             cccEE
Confidence            88876

>KOG4378|consensus

Probab=93.15  E-value=0.33  Score=39.42  Aligned_cols=72  Identities=22%  Similarity=0.340  Sum_probs=53.5

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      +.-|.|+.|.-|+-|+|-.    +.+|++||=+ +|.+|+.....-..- -.|     +.-|-++|.+.+    -.+||+
T Consensus       202 ~~~~~HsAP~~gicfspsn----e~l~vsVG~Dkki~~yD~~s~~s~~~-l~y-----~~Plstvaf~~~----G~~L~a  267 (673)
T KOG4378|consen  202 HASEAHSAPCRGICFSPSN----EALLVSVGYDKKINIYDIRSQASTDR-LTY-----SHPLSTVAFSEC----GTYLCA  267 (673)
T ss_pred             chhhhccCCcCcceecCCc----cceEEEecccceEEEeecccccccce-eee-----cCCcceeeecCC----ceEEEe
Confidence            3457899999999999965    6789999987 799999885421111 133     344888988876    345999


Q ss_pred             ecCCcEe
Q psy8253          81 AGSRAVI   87 (88)
Q Consensus        81 aG~~G~I   87 (88)
                      |..+|.|
T Consensus       268 G~s~G~~  274 (673)
T KOG4378|consen  268 GNSKGEL  274 (673)
T ss_pred             ecCCceE
Confidence            9999986

>KOG0305|consensus

Probab=93.01  E-value=0.61  Score=37.33  Aligned_cols=57  Identities=14%  Similarity=0.273  Sum_probs=46.3

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe---EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR---VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD   70 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~---v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d   70 (88)
                      ..+|...+.+.+|+|+.    ..++|+-||-.   |.++.....   +.|+..   |..-.+++++|++.
T Consensus       339 ~~~H~aAVKA~awcP~q----~~lLAsGGGs~D~~i~fwn~~~g---~~i~~v---dtgsQVcsL~Wsk~  398 (484)
T KOG0305|consen  339 FTEHTAAVKALAWCPWQ----SGLLATGGGSADRCIKFWNTNTG---ARIDSV---DTGSQVCSLIWSKK  398 (484)
T ss_pred             EeccceeeeEeeeCCCc----cCceEEcCCCcccEEEEEEcCCC---cEeccc---ccCCceeeEEEcCC
Confidence            36899999999999987    56799988874   777776654   666666   78999999999987

>KOG0305|consensus

Probab=92.79  E-value=0.46  Score=38.01  Aligned_cols=61  Identities=25%  Similarity=0.362  Sum_probs=47.8

Q ss_pred             CCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          19 LLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        19 ~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      +.+|...+++|+.=+..|++++-..+   ++.+.... + ++.++++.|+.+   |.. ||+|-.+|.|.
T Consensus       182 lldWss~n~laValg~~vylW~~~s~---~v~~l~~~-~-~~~vtSv~ws~~---G~~-LavG~~~g~v~  242 (484)
T KOG0305|consen  182 LLDWSSANVLAVALGQSVYLWSASSG---SVTELCSF-G-EELVTSVKWSPD---GSH-LAVGTSDGTVQ  242 (484)
T ss_pred             HhhcccCCeEEEEecceEEEEecCCC---ceEEeEec-C-CCceEEEEECCC---CCE-EEEeecCCeEE
Confidence            35678888999999999999998886   34444432 2 899999999988   455 99999999873

>KOG1524|consensus

Probab=92.77  E-value=0.64  Score=38.16  Aligned_cols=67  Identities=12%  Similarity=0.171  Sum_probs=52.0

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      ....++|++++-|-.     ....-|-++++.|=.+.++  .++||.-   .++--+-+|.|+..    .-||++||+|=
T Consensus       143 Q~~~~v~c~~W~p~S-----~~vl~c~g~h~~IKpL~~n--~k~i~Wk---AHDGiiL~~~W~~~----s~lI~sgGED~  208 (737)
T KOG1524|consen  143 QNEESIRCARWAPNS-----NSIVFCQGGHISIKPLAAN--SKIIRWR---AHDGLVLSLSWSTQ----SNIIASGGEDF  208 (737)
T ss_pred             hcCceeEEEEECCCC-----CceEEecCCeEEEeecccc--cceeEEe---ccCcEEEEeecCcc----ccceeecCCce
Confidence            456899999998843     3366788889888887775  5888876   46778999999976    56799999874


Q ss_pred             E
Q psy8253          86 V   86 (88)
Q Consensus        86 ~   86 (88)
                      +
T Consensus       209 k  209 (737)
T KOG1524|consen  209 R  209 (737)
T ss_pred             e
Confidence            3

>KOG0268|consensus

Probab=92.68  E-value=0.37  Score=37.65  Aligned_cols=34  Identities=21%  Similarity=0.476  Sum_probs=28.3

Q ss_pred             CeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCe
Q psy8253          10 PLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSI   47 (88)
Q Consensus        10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~   47 (88)
                      .|-+|+|||-.    ..++|++|.+| |.+|++-++.|+
T Consensus       189 ti~svkfNpvE----TsILas~~sDrsIvLyD~R~~~Pl  223 (433)
T KOG0268|consen  189 SISSVKFNPVE----TSILASCASDRSIVLYDLRQASPL  223 (433)
T ss_pred             ceeEEecCCCc----chheeeeccCCceEEEecccCCcc
Confidence            56789999854    78999998886 999999998764

>smart00320 WD40 WD40 repeats

Probab=92.61  E-value=0.48  Score=21.25  Aligned_cols=27  Identities=26%  Similarity=0.251  Sum_probs=21.3

Q ss_pred             CCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          58 IEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        58 ~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      +...+.+++|...    ..++++++.+|.|+
T Consensus        11 ~~~~i~~~~~~~~----~~~~~~~~~d~~~~   37 (40)
T smart00320       11 HTGPVTSVAFSPD----GKYLASASDDGTIK   37 (40)
T ss_pred             cCCceeEEEECCC----CCEEEEecCCCeEE
Confidence            4567899999865    25799999999874

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0269|consensus

Probab=92.50  E-value=0.22  Score=41.78  Aligned_cols=67  Identities=12%  Similarity=0.242  Sum_probs=46.0

Q ss_pred             CeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          10 PLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        10 ~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      .+-+|+|+|-.    ...||++-.+ .+..+++-+-..++.  .+  .-++--++||-|.++    +.+||+||.|+.||
T Consensus       178 SiRDV~fsp~~----~~~F~s~~dsG~lqlWDlRqp~r~~~--k~--~AH~GpV~c~nwhPn----r~~lATGGRDK~vk  245 (839)
T KOG0269|consen  178 SIRDVKFSPGY----GNKFASIHDSGYLQLWDLRQPDRCEK--KL--TAHNGPVLCLNWHPN----REWLATGGRDKMVK  245 (839)
T ss_pred             hhhceeeccCC----CceEEEecCCceEEEeeccCchhHHH--Hh--hcccCceEEEeecCC----CceeeecCCCccEE
Confidence            56689999854    5678887655 466666654211111  11  135777999999985    67899999999886

>KOG1407|consensus

Probab=92.41  E-value=1.1  Score=33.72  Aligned_cols=23  Identities=43%  Similarity=0.622  Sum_probs=18.8

Q ss_pred             CCCceeEEEEeecCCCCceEEEEecCC
Q psy8253          58 IEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus        58 ~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .+..-|+|||-+.    .||||-|+.+
T Consensus       271 ~~~~t~tVAWHPk----~~LLAyA~dd  293 (313)
T KOG1407|consen  271 CEGPTFTVAWHPK----RPLLAYACDD  293 (313)
T ss_pred             ccCCceeEEecCC----CceeeEEecC
Confidence            4677899999876    7999998764

>KOG1587|consensus

Probab=92.15  E-value=1.2  Score=36.14  Aligned_cols=76  Identities=11%  Similarity=0.091  Sum_probs=57.5

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCC--eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGS--IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~--~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      -..++.+++|+||.+   .-+++=+-.+.|.++.+...+.  ...+.. .+-.+.+....+.|..+..+ .. +.+++.|
T Consensus       241 ~~s~v~~~~f~p~~p---~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~-~~~sh~~~v~~vvW~~~~~~-~~-f~s~ssD  314 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDP---NLLAGGCYNGQVVLWDLRKGSDTPPSGLSA-LEVSHSEPVTAVVWLQNEHN-TE-FFSLSSD  314 (555)
T ss_pred             cCCceeEEEeccCCc---ceEEeeccCceEEEEEccCCCCCCCccccc-ccccCCcCeEEEEEeccCCC-Cc-eEEEecC
Confidence            346899999999985   5677778888999999988653  333333 33358999999999998654 66 7788889


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.|.
T Consensus       315 G~i~  318 (555)
T KOG1587|consen  315 GSIC  318 (555)
T ss_pred             CcEe
Confidence            9873

>KOG0291|consensus

Probab=92.06  E-value=1.1  Score=38.00  Aligned_cols=72  Identities=19%  Similarity=0.274  Sum_probs=54.6

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCC-----CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGG-----SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~-----~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      ..+.++-+++|+|.     ...||++-+|-+.|++.|..-     |..+-+.|.  .+-+++-++.|+-|    .-+|++
T Consensus        94 ~fk~~v~~i~fSPn-----g~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~--g~fddi~si~Ws~D----Sr~l~~  162 (893)
T KOG0291|consen   94 NFKRGVGAIKFSPN-----GKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYL--GHFDDITSIDWSDD----SRLLVT  162 (893)
T ss_pred             eecCccceEEECCC-----CcEEEEEecceeEEEecCcchhcccCcceEeeeec--CCccceeEEEeccC----CceEEe
Confidence            45678889999984     356999999999999998742     345556664  46788999999988    467888


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      |+.|-..|
T Consensus       163 gsrD~s~r  170 (893)
T KOG0291|consen  163 GSRDLSAR  170 (893)
T ss_pred             ccccceEE
Confidence            88775543

>KOG0269|consensus

Probab=92.01  E-value=0.13  Score=43.17  Aligned_cols=67  Identities=15%  Similarity=0.280  Sum_probs=51.1

Q ss_pred             EEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          13 GAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        13 ~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      +|+++.+    ..++.|||..+ -|.||.+...+.=++|+.|.  +++....++.|..-   ...+|++||.||.||
T Consensus        92 DVkW~~~----~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~--EH~Rs~~~ldfh~t---ep~iliSGSQDg~vK  159 (839)
T KOG0269|consen   92 DVKWGQL----YSNLIATCSTNGVISVWDLNKSIRNKLLTVFN--EHERSANKLDFHST---EPNILISGSQDGTVK  159 (839)
T ss_pred             hcccccc----hhhhheeecCCCcEEEEecCccccchhhhHhh--hhccceeeeeeccC---CccEEEecCCCceEE
Confidence            4555533    37889999988 49999999843336677775  57889999999865   345799999999986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=91.97  E-value=1.2  Score=30.63  Aligned_cols=54  Identities=19%  Similarity=0.352  Sum_probs=32.3

Q ss_pred             CEEEEe-CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          26 RIFATV-GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        26 ~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      .+|++. +.+++.|++....   ++++...   ......+++|+.+   +.-|+++++.+|.|+
T Consensus       220 ~~~~~~~~~~~i~v~d~~~~---~~~~~~~---~~~~~~~~~~~~~---g~~l~~~~~~~~~i~  274 (300)
T TIGR03866       220 TAFVALGPANRVAVVDAKTY---EVLDYLL---VGQRVWQLAFTPD---EKYLLTTNGVSNDVS  274 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCC---cEEEEEE---eCCCcceEEECCC---CCEEEEEcCCCCeEE
Confidence            345544 4568999987643   4444332   2345788999876   344344456678764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328|consensus

Probab=91.83  E-value=0.38  Score=38.33  Aligned_cols=73  Identities=16%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCee--EEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIK--LLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~--~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +-|+.-|-++++||-.    +..+||+|-++ +.||++-.-++-.  +|..+   ++.-.+.+...|.+  +|.  |++-
T Consensus       319 ~lh~kKI~sv~~NP~~----p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~---~HrrsV~sAyFSPs--~gt--l~TT  387 (498)
T KOG4328|consen  319 RLHKKKITSVALNPVC----PWFLATASLDQTAKIWDLRQLRGKASPFLSTL---PHRRSVNSAYFSPS--GGT--LLTT  387 (498)
T ss_pred             hhhhcccceeecCCCC----chheeecccCcceeeeehhhhcCCCCcceecc---cccceeeeeEEcCC--CCc--eEee
Confidence            5677789999999965    56799999998 5599987644322  56666   78888999988877  555  7777


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      +.|..||
T Consensus       388 ~~D~~IR  394 (498)
T KOG4328|consen  388 CQDNEIR  394 (498)
T ss_pred             ccCCceE
Confidence            7776665

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.68  E-value=2.3  Score=35.19  Aligned_cols=34  Identities=15%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             CeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCC
Q psy8253          10 PLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPD   43 (88)
Q Consensus        10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~   43 (88)
                      .++|+.+.|....+.+.++|+--+++|+|+++-+
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            6899999999887888999999999999999875

>KOG1645|consensus

Probab=91.62  E-value=0.46  Score=37.51  Aligned_cols=69  Identities=16%  Similarity=0.377  Sum_probs=49.5

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      ++.-|-+++|+||...  --.+|..| +.+.|.++...   .++++|   +.....++|+|..|.   .+.|-+|-.+|.
T Consensus       192 ~g~~IrdlafSp~~~G--Ll~~asl~-nkiki~dlet~---~~vssy---~a~~~~wSC~wDlde---~h~IYaGl~nG~  259 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEG--LLGLASLG-NKIKIMDLETS---CVVSSY---IAYNQIWSCCWDLDE---RHVIYAGLQNGM  259 (463)
T ss_pred             cchhhhhhccCccccc--eeeeeccC-ceEEEEecccc---eeeehe---eccCCceeeeeccCC---cceeEEeccCce
Confidence            4556778888888742  23445443 57889999887   677777   456889999999983   455777777887


Q ss_pred             e
Q psy8253          87 I   87 (88)
Q Consensus        87 I   87 (88)
                      |
T Consensus       260 V  260 (463)
T KOG1645|consen  260 V  260 (463)
T ss_pred             E
Confidence            6

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=91.55  E-value=2.7  Score=28.66  Aligned_cols=72  Identities=25%  Similarity=0.338  Sum_probs=48.8

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeC--CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVG--SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG--~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      .+.|...+.+++|.|...     .+++.+  ...+.+++....   +.++.+..  +...+.+++|+.+   +..+++.+
T Consensus       151 ~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~v~~~~~~~~---~~~~~~~~  217 (466)
T COG2319         151 LEGHSESVTSLAFSPDGK-----LLASGSSLDGTIKLWDLRTG---KPLSTLAG--HTDPVSSLAFSPD---GGLLIASG  217 (466)
T ss_pred             EecCcccEEEEEECCCCC-----EEEecCCCCCceEEEEcCCC---ceEEeecc--CCCceEEEEEcCC---cceEEEEe
Confidence            356778888999998664     566666  567999988874   33444432  6888999999943   23344444


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      +.+|.|+
T Consensus       218 ~~d~~i~  224 (466)
T COG2319         218 SSDGTIR  224 (466)
T ss_pred             cCCCcEE
Confidence            8888764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=91.36  E-value=0.48  Score=26.14  Aligned_cols=29  Identities=10%  Similarity=0.306  Sum_probs=23.4

Q ss_pred             cCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253          55 DPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        55 d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      +....+.+-+++||+.    ..|||+|-.+|.|
T Consensus         7 ~k~l~~~v~~~~w~P~----mdLiA~~t~~g~v   35 (47)
T PF12894_consen    7 EKNLPSRVSCMSWCPT----MDLIALGTEDGEV   35 (47)
T ss_pred             ccCCCCcEEEEEECCC----CCEEEEEECCCeE
Confidence            3345667889999987    5799999999976

>KOG2055|consensus

Probab=91.30  E-value=2.1  Score=34.34  Aligned_cols=66  Identities=17%  Similarity=0.344  Sum_probs=48.6

Q ss_pred             CeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253          10 PLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      .+-+..|.    .+...+.|+.|.+.|.|+.+.+.   .+++.|.|+   ..++.-+-|... ++ .+||+|+..|+|
T Consensus       346 ~v~~~~fs----Sdsk~l~~~~~~GeV~v~nl~~~---~~~~rf~D~---G~v~gts~~~S~-ng-~ylA~GS~~GiV  411 (514)
T KOG2055|consen  346 VVSDFTFS----SDSKELLASGGTGEVYVWNLRQN---SCLHRFVDD---GSVHGTSLCISL-NG-SYLATGSDSGIV  411 (514)
T ss_pred             EEeeEEEe----cCCcEEEEEcCCceEEEEecCCc---ceEEEEeec---CccceeeeeecC-CC-ceEEeccCcceE
Confidence            44555665    23478888888889999999987   899999884   445666655442 23 389999999987

>KOG1445|consensus

Probab=91.01  E-value=0.32  Score=40.71  Aligned_cols=76  Identities=25%  Similarity=0.454  Sum_probs=53.3

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCC--------------CC--eeEEE----------------
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDG--------------GS--IKLLQ----------------   51 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~--------------~~--~~~l~----------------   51 (88)
                      .-|+..+-+..|+||.+    -++|||+.++ |.|++++.+              ++  ++.|+                
T Consensus        76 ~~H~d~VtDl~FspF~D----~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~  151 (1012)
T KOG1445|consen   76 AAHGDQVTDLGFSPFAD----ELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS  151 (1012)
T ss_pred             ecccceeeccCccccch----hhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence            45788889999999974    4688888886 888888842              11  23333                


Q ss_pred             -----------EEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          52 -----------CYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        52 -----------~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                                 .+....+.|-+-+..|++|    -.||++++++-.||
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~WseD----G~llatscKdkqir  195 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADWSED----GKLLATSCKDKQIR  195 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhccccccC----CceEeeecCCcceE
Confidence                       1111356777888899988    35699998887765

>KOG0283|consensus

Probab=90.98  E-value=0.66  Score=38.72  Aligned_cols=36  Identities=14%  Similarity=0.473  Sum_probs=29.9

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCC
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPD   43 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~   43 (88)
                      +...|+..||+++|+|     +..+.|+.|.+. |+|+++..
T Consensus       262 ~~~ah~gaIw~mKFS~-----DGKyLAsaGeD~virVWkVie  298 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSH-----DGKYLASAGEDGVIRVWKVIE  298 (712)
T ss_pred             cccccCCcEEEEEeCC-----CCceeeecCCCceEEEEEEec
Confidence            3447999999999998     457899999996 88888766

>KOG0973|consensus

Probab=90.81  E-value=1.6  Score=37.64  Aligned_cols=72  Identities=21%  Similarity=0.348  Sum_probs=52.6

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCC------C---CC---e---eEEEEEEcCCCCCceeEEEEe
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPD------G---GS---I---KLLQCYADPDIEENFYTCAWS   68 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~------~---~~---~---~~l~~~~d~d~~e~~y~~aWs   68 (88)
                      ++|-+++-+|+|.|-     .+.||+-+.++ |.|.+-..      .   |+   .   +....+  ..++-++-+++|+
T Consensus        66 ~~h~~sv~CVR~S~d-----G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l--~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSPD-----GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL--RGHDSDVLDVNWS  138 (942)
T ss_pred             ccccCceeEEEECCC-----CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE--ecCCCccceeccC
Confidence            789999999999983     56799888887 56776653      0   11   1   222233  3578889999999


Q ss_pred             ecCCCCceEEEEecCCcEe
Q psy8253          69 MDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        69 ~d~~~~~plLa~aG~~G~I   87 (88)
                      ++    ..+||..|.++.|
T Consensus       139 p~----~~~lvS~s~DnsV  153 (942)
T KOG0973|consen  139 PD----DSLLVSVSLDNSV  153 (942)
T ss_pred             CC----ccEEEEecccceE
Confidence            97    5789999998876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=90.06  E-value=2.1  Score=29.38  Aligned_cols=54  Identities=13%  Similarity=0.230  Sum_probs=34.6

Q ss_pred             CEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          26 RIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        26 ~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      .+|++.+.+ .+.++++...   +.++.+..   .+....++|+.+   +.-++++++.++.|+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~---~~~~~~~~---~~~~~~l~~~~d---g~~l~~~~~~~~~v~   56 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL---EVTRTFPV---GQRPRGITLSKD---GKLLYVCASDSDTIQ   56 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC---ceEEEEEC---CCCCCceEECCC---CCEEEEEECCCCeEE
Confidence            467777755 6899988665   45555532   234567899866   345556777777653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1523|consensus

Probab=89.40  E-value=2.3  Score=32.82  Aligned_cols=70  Identities=20%  Similarity=0.368  Sum_probs=50.5

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCC----eeEEEEEEcCCCCCceeEEEEeecCCCCceE
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGS----IKLLQCYADPDIEENFYTCAWSMDLESGRPL   77 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~pl   77 (88)
                      ...+|...+-++.++|...     -..||+.+| .+|++.+.++.    +.+|+ +     +..--+|.|+..    ..+
T Consensus        50 tls~Hd~~vtgvdWap~sn-----rIvtcs~drnayVw~~~~~~~WkptlvLlR-i-----NrAAt~V~WsP~----enk  114 (361)
T KOG1523|consen   50 TLSEHDKIVTGVDWAPKSN-----RIVTCSHDRNAYVWTQPSGGTWKPTLVLLR-I-----NRAATCVKWSPK----ENK  114 (361)
T ss_pred             ehhhhCcceeEEeecCCCC-----ceeEccCCCCccccccCCCCeeccceeEEE-e-----ccceeeEeecCc----Cce
Confidence            3468889999999998653     378999886 99999988763    33333 2     555678999977    235


Q ss_pred             EEEecCCcEe
Q psy8253          78 LAVAGSRAVI   87 (88)
Q Consensus        78 La~aG~~G~I   87 (88)
                      +|+||.-.+|
T Consensus       115 FAVgSgar~i  124 (361)
T KOG1523|consen  115 FAVGSGARLI  124 (361)
T ss_pred             EEeccCccEE
Confidence            7887765544

>KOG0288|consensus

Probab=89.25  E-value=1.8  Score=34.34  Aligned_cols=62  Identities=18%  Similarity=0.230  Sum_probs=40.0

Q ss_pred             EEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253          12 FGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus        12 y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      -.+.|+|     ...++|+=|.+ +|+|++....   ++.+.-.-...+..+.+|+|++.   |.+ |++++..+
T Consensus       391 trvvfSp-----d~~YvaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~s---G~~-Llsadk~~  453 (459)
T KOG0288|consen  391 TRVVFSP-----DGSYVAAGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPS---GSG-LLSADKQK  453 (459)
T ss_pred             ceeEECC-----CCceeeeccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCC---Cch-hhcccCCc
Confidence            3456665     34556665555 6999999987   44444444345558999999985   778 44444443

>KOG0270|consensus

Probab=88.86  E-value=1.8  Score=34.49  Aligned_cols=74  Identities=18%  Similarity=0.301  Sum_probs=50.8

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCC-eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGS-IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~-~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      ..-|..+|-++.+|+..    +.+.+|.|+++ |.+..+..+.+ +...+.+.-   .-   +++.+.+++. .-.||+|
T Consensus       369 ~~AHd~~ISgl~~n~~~----p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~---~r---l~c~~~~~~~-a~~la~G  437 (463)
T KOG0270|consen  369 LKAHDDEISGLSVNIQT----PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL---GR---LHCFALDPDV-AFTLAFG  437 (463)
T ss_pred             EEeccCCcceEEecCCC----CcceeeccccceEEEEeecCCCCcccccccccc---cc---eeecccCCCc-ceEEEec
Confidence            35688899999999977    45688888885 88999887755 333344421   11   4555666543 3459999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      |.++.+|
T Consensus       438 G~k~~~~  444 (463)
T KOG0270|consen  438 GEKAVLR  444 (463)
T ss_pred             CccceEE
Confidence            9998764

>KOG0772|consensus

Probab=88.54  E-value=1  Score=36.79  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=50.4

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcC-CCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADP-DIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~-d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      +-|+-.|+|||-.    ..+.|.|+.+.|++++.... .+...-.+.|. +...++-|+++|+|   |+- |++=|+|+.
T Consensus       317 Rv~~tsC~~nrdg----~~iAagc~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~FS~d---g~~-LlSRg~D~t  387 (641)
T KOG0772|consen  317 RVPVTSCAWNRDG----KLIAAGCLDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISFSYD---GNY-LLSRGFDDT  387 (641)
T ss_pred             ccCceeeecCCCc----chhhhcccCCceeeeecCCc-ccccceEeeeccCCCCceeEEEeccc---cch-hhhccCCCc
Confidence            4577889999844    44888999999999997432 22333333332 34568999999999   444 788888877


Q ss_pred             eC
Q psy8253          87 IR   88 (88)
Q Consensus        87 Ir   88 (88)
                      +|
T Consensus       388 LK  389 (641)
T KOG0772|consen  388 LK  389 (641)
T ss_pred             ee
Confidence            64

>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E

Probab=88.29  E-value=1.8  Score=25.67  Aligned_cols=31  Identities=19%  Similarity=0.382  Sum_probs=25.3

Q ss_pred             CCCEEEEe-CCCeEEEEEcCCCCC-eeEEEEEE
Q psy8253          24 QPRIFATV-GSNRVSIYECPDGGS-IKLLQCYA   54 (88)
Q Consensus        24 ~~~~fAtv-G~~~v~Vy~~~~~~~-~~~l~~~~   54 (88)
                      ....||++ -.+.|.||+..++.+ +++++.+.
T Consensus        28 ~~N~Fav~~e~~~iKIfkyd~~tNei~L~KE~~   60 (63)
T PF14157_consen   28 EHNHFAVVDEDGQIKIFKYDEDTNEITLKKEFY   60 (63)
T ss_dssp             STTEEEEE-ETTEEEEEEEETTTTEEEEEEEEE
T ss_pred             cCCEEEEEecCCeEEEEEeCCCCCeEEEEEeee
Confidence            47789999 455799999999876 88888764

>KOG1539|consensus

Probab=87.93  E-value=2.1  Score=36.57  Aligned_cols=53  Identities=23%  Similarity=0.342  Sum_probs=41.4

Q ss_pred             EEEE-eCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253          27 IFAT-VGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        27 ~fAt-vG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      ++|+ +.++.|+|+.+-.|   ++|.+|+.+  ...+-.++...|   |.|+||+|+..|.|
T Consensus       216 VVaiG~~~G~ViifNlK~d---kil~sFk~d--~g~VtslSFrtD---G~p~las~~~~G~m  269 (910)
T KOG1539|consen  216 VVAIGLENGTVIIFNLKFD---KILMSFKQD--WGRVTSLSFRTD---GNPLLASGRSNGDM  269 (910)
T ss_pred             EEEEeccCceEEEEEcccC---cEEEEEEcc--ccceeEEEeccC---CCeeEEeccCCceE
Confidence            4443 34668999999998   889999763  466788888766   89999999999965

>KOG1007|consensus

Probab=87.88  E-value=1.8  Score=33.21  Aligned_cols=75  Identities=21%  Similarity=0.310  Sum_probs=49.3

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      .|...|++-+-++.|||..    .-++||||.+ .|.|+++-.-.  ..++.-  +++.--+++|-..  + ..++||.+
T Consensus       208 sI~dAHgq~vrdlDfNpnk----q~~lvt~gDdgyvriWD~R~tk--~pv~el--~~HsHWvW~VRfn--~-~hdqLiLs  276 (370)
T KOG1007|consen  208 SIEDAHGQRVRDLDFNPNK----QHILVTCGDDGYVRIWDTRKTK--FPVQEL--PGHSHWVWAVRFN--P-EHDQLILS  276 (370)
T ss_pred             chhhhhcceeeeccCCCCc----eEEEEEcCCCccEEEEeccCCC--cccccc--CCCceEEEEEEec--C-ccceEEEe
Confidence            4667899999999999965    5689999998 69999987632  233322  1233333333322  2 23678888


Q ss_pred             ecCCcEe
Q psy8253          81 AGSRAVI   87 (88)
Q Consensus        81 aG~~G~I   87 (88)
                      ||.|..|
T Consensus       277 ~~SDs~V  283 (370)
T KOG1007|consen  277 GGSDSAV  283 (370)
T ss_pred             cCCCcee
Confidence            8887654

>KOG2106|consensus

Probab=87.80  E-value=7.3  Score=31.89  Aligned_cols=58  Identities=16%  Similarity=0.213  Sum_probs=39.1

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC-eeEEEEEEcCCCCCceeEEEEeec
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS-IKLLQCYADPDIEENFYTCAWSMD   70 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~-~~~l~~~~d~d~~e~~y~~aWs~d   70 (88)
                      ++.+ +.|+-.|+|+|--     ..||+-..+ .|+||++..++. ...+..+.    ..-+-..-||.|
T Consensus       443 ~~~d-~~~ls~v~ysp~G-----~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~----gs~ithLDwS~D  502 (626)
T KOG2106|consen  443 IHTD-NEQLSVVRYSPDG-----AFLAVGSHDNHIYIYRVSANGRKYSRVGKCS----GSPITHLDWSSD  502 (626)
T ss_pred             EEec-CCceEEEEEcCCC-----CEEEEecCCCeEEEEEECCCCcEEEEeeeec----CceeEEeeecCC
Confidence            4556 7899999999943     456666655 699999999875 33344432    244555667766

>KOG2048|consensus

Probab=87.55  E-value=5.9  Score=33.08  Aligned_cols=71  Identities=14%  Similarity=0.229  Sum_probs=43.4

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeC-CCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVG-SNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      +-.+.+||+.+-||-..      -+.+| .+. +..+...++   ++...-.-.-.+--+.+++|..+   + ..||.|+
T Consensus       107 d~~gg~IWsiai~p~~~------~l~IgcddGvl~~~s~~p~---~I~~~r~l~rq~sRvLslsw~~~---~-~~i~~Gs  173 (691)
T KOG2048|consen  107 DSNGGAIWSIAINPENT------ILAIGCDDGVLYDFSIGPD---KITYKRSLMRQKSRVLSLSWNPT---G-TKIAGGS  173 (691)
T ss_pred             cCCCcceeEEEeCCccc------eEEeecCCceEEEEecCCc---eEEEEeecccccceEEEEEecCC---c-cEEEecc
Confidence            45677888888888442      34445 333 333334443   33222222223477999999987   3 3499999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .||+||
T Consensus       174 ~Dg~Ir  179 (691)
T KOG2048|consen  174 IDGVIR  179 (691)
T ss_pred             cCceEE
Confidence            999886

>KOG0302|consensus

Probab=87.46  E-value=1.4  Score=34.67  Aligned_cols=74  Identities=14%  Similarity=0.271  Sum_probs=47.3

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC--------eeEEE------EEEcCCCCCceeEEEEe
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS--------IKLLQ------CYADPDIEENFYTCAWS   68 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~--------~~~l~------~~~d~d~~e~~y~~aWs   68 (88)
                      .+-|+.||.++.|+|..    ..+||+.|.+ +|+|+++.....        .+-||      .|.. .-..++=.+.|.
T Consensus       343 fk~Hk~pItsieW~p~e----~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVH-qGQke~KevhWH  417 (440)
T KOG0302|consen  343 FKYHKAPITSIEWHPHE----DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVH-QGQKEVKEVHWH  417 (440)
T ss_pred             EEeccCCeeEEEecccc----CceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEe-cchhHhhhheec
Confidence            46799999999999965    5678888877 699999875321        11111      1221 124445568999


Q ss_pred             ecCCCCceEEEEecCCc
Q psy8253          69 MDLESGRPLLAVAGSRA   85 (88)
Q Consensus        69 ~d~~~~~plLa~aG~~G   85 (88)
                      ..-   .-+|++-+.+|
T Consensus       418 ~Qi---PG~lvsTa~dG  431 (440)
T KOG0302|consen  418 RQI---PGLLVSTAIDG  431 (440)
T ss_pred             cCC---CCeEEEecccc
Confidence            771   12566666666

>KOG0282|consensus

Probab=87.26  E-value=1.4  Score=35.35  Aligned_cols=72  Identities=21%  Similarity=0.402  Sum_probs=58.0

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      ....|..++-+++||+     ...-|-++|=++ +.+++.+++   ++++.|   ..+.-.||+..-.|  + ..++.+|
T Consensus       253 tf~gH~k~Vrd~~~s~-----~g~~fLS~sfD~~lKlwDtETG---~~~~~f---~~~~~~~cvkf~pd--~-~n~fl~G  318 (503)
T KOG0282|consen  253 TFKGHRKPVRDASFNN-----CGTSFLSASFDRFLKLWDTETG---QVLSRF---HLDKVPTCVKFHPD--N-QNIFLVG  318 (503)
T ss_pred             hhhcchhhhhhhhccc-----cCCeeeeeecceeeeeeccccc---eEEEEE---ecCCCceeeecCCC--C-CcEEEEe
Confidence            3456888888888887     345588999885 899999988   889999   46788899988777  3 5679999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      |.++.|+
T Consensus       319 ~sd~ki~  325 (503)
T KOG0282|consen  319 GSDKKIR  325 (503)
T ss_pred             cCCCcEE
Confidence            9999985

>KOG0640|consensus

Probab=87.19  E-value=3  Score=32.36  Aligned_cols=67  Identities=16%  Similarity=0.273  Sum_probs=47.9

Q ss_pred             CeEEEEEecCCCCCCCCEEEEeCCCe--EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253          10 PLFGAQFNHLLKDDQPRIFATVGSNR--VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~--v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      |+-+..|-|-.+      |-.+|.++  +++|++.+-+  ..+.+--|+.+.+.+.+|-.+..    ..|-++|+.||.|
T Consensus       218 ~vrsiSfHPsGe------fllvgTdHp~~rlYdv~T~Q--cfvsanPd~qht~ai~~V~Ys~t----~~lYvTaSkDG~I  285 (430)
T KOG0640|consen  218 PVRSISFHPSGE------FLLVGTDHPTLRLYDVNTYQ--CFVSANPDDQHTGAITQVRYSST----GSLYVTASKDGAI  285 (430)
T ss_pred             eeeeEeecCCCc------eEEEecCCCceeEEecccee--EeeecCcccccccceeEEEecCC----ccEEEEeccCCcE
Confidence            666777776443      78888886  8888877641  22333345568899999988754    4568999999998


Q ss_pred             C
Q psy8253          88 R   88 (88)
Q Consensus        88 r   88 (88)
                      |
T Consensus       286 k  286 (430)
T KOG0640|consen  286 K  286 (430)
T ss_pred             E
Confidence            6

>KOG1063|consensus

Probab=87.12  E-value=1.9  Score=36.17  Aligned_cols=73  Identities=23%  Similarity=0.368  Sum_probs=50.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEE-cCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYA-DPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~-d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      +.|.-.+--.+|+|-     ...+++|+.+| +.+|+...+...+.  .|. -+++..-+++|.|+.|.    ..+|+|+
T Consensus       569 ~~HsLTVT~l~FSpd-----g~~LLsvsRDRt~sl~~~~~~~~~e~--~fa~~k~HtRIIWdcsW~pde----~~FaTaS  637 (764)
T KOG1063|consen  569 EGHSLTVTRLAFSPD-----GRYLLSVSRDRTVSLYEVQEDIKDEF--RFACLKAHTRIIWDCSWSPDE----KYFATAS  637 (764)
T ss_pred             cccceEEEEEEECCC-----CcEEEEeecCceEEeeeeecccchhh--hhccccccceEEEEcccCccc----ceeEEec
Confidence            566777777888883     45688888886 99999866532111  121 34678889999999882    2388998


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .|-.|+
T Consensus       638 RDK~Vk  643 (764)
T KOG1063|consen  638 RDKKVK  643 (764)
T ss_pred             CCceEE
Confidence            887663

>KOG0286|consensus

Probab=87.06  E-value=5.6  Score=30.46  Aligned_cols=61  Identities=20%  Similarity=0.223  Sum_probs=44.2

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD   70 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d   70 (88)
                      +..+-|..-|.+|+|.|-...     |||...+. ...|++-.|.   -|..|..+...-.+.+|+.|..
T Consensus       223 qtF~ghesDINsv~ffP~G~a-----fatGSDD~tcRlyDlRaD~---~~a~ys~~~~~~gitSv~FS~S  284 (343)
T KOG0286|consen  223 QTFEGHESDINSVRFFPSGDA-----FATGSDDATCRLYDLRADQ---ELAVYSHDSIICGITSVAFSKS  284 (343)
T ss_pred             EeecccccccceEEEccCCCe-----eeecCCCceeEEEeecCCc---EEeeeccCcccCCceeEEEccc
Confidence            346778889999999996543     89888884 7889988883   4445544455666777777754

>KOG4283|consensus

Probab=86.75  E-value=2.5  Score=32.62  Aligned_cols=69  Identities=16%  Similarity=0.209  Sum_probs=47.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|+..|-.+.++|++    .-+|-+-.=++ +.|++-.+-   +..-.|   ..++.+|+-|||...  -.+.|+++|.
T Consensus        98 ~~Hky~iss~~WyP~D----tGmFtssSFDhtlKVWDtnTl---Q~a~~F---~me~~VYshamSp~a--~sHcLiA~gt  165 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPID----TGMFTSSSFDHTLKVWDTNTL---QEAVDF---KMEGKVYSHAMSPMA--MSHCLIAAGT  165 (397)
T ss_pred             ccceeeeeeeEEeeec----CceeecccccceEEEeecccc---eeeEEe---ecCceeehhhcChhh--hcceEEEEec
Confidence            4577888889999986    45676655554 777776653   444444   568899999999873  3456666666


Q ss_pred             Cc
Q psy8253          84 RA   85 (88)
Q Consensus        84 ~G   85 (88)
                      ++
T Consensus       166 r~  167 (397)
T KOG4283|consen  166 RD  167 (397)
T ss_pred             CC
Confidence            55

>KOG0307|consensus

Probab=86.48  E-value=0.97  Score=39.19  Aligned_cols=72  Identities=19%  Similarity=0.369  Sum_probs=53.5

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCce-EEEE
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRP-LLAV   80 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~p-lLa~   80 (88)
                      +.|-|..-+-++.++|-+    +.++.++|++ ||.+...++.   ++|-.+  +-...-++.+.||.-    +| ++++
T Consensus       248 ~~~~H~~GilslsWc~~D----~~lllSsgkD~~ii~wN~~tg---Evl~~~--p~~~nW~fdv~w~pr----~P~~~A~  314 (1049)
T KOG0307|consen  248 ILEGHQRGILSLSWCPQD----PRLLLSSGKDNRIICWNPNTG---EVLGEL--PAQGNWCFDVQWCPR----NPSVMAA  314 (1049)
T ss_pred             hhcccccceeeeccCCCC----chhhhcccCCCCeeEecCCCc---eEeeec--CCCCcceeeeeecCC----Ccchhhh
Confidence            446788888888888743    6788999988 5666666664   666555  235677899999976    45 7999


Q ss_pred             ecCCcEe
Q psy8253          81 AGSRAVI   87 (88)
Q Consensus        81 aG~~G~I   87 (88)
                      +..+|.|
T Consensus       315 asfdgkI  321 (1049)
T KOG0307|consen  315 ASFDGKI  321 (1049)
T ss_pred             heeccce
Confidence            9999987

>KOG0295|consensus

Probab=86.20  E-value=1.9  Score=33.64  Aligned_cols=61  Identities=15%  Similarity=0.281  Sum_probs=40.2

Q ss_pred             CCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecC-----------CCCceEEEEecCCcEeC
Q psy8253          23 DQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDL-----------ESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        23 ~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~-----------~~~~plLa~aG~~G~Ir   88 (88)
                      .+..+||+++++ +++++-.....-..+++     +++-.+=+++|....           .++.|.|.+|+.|++||
T Consensus       245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR-----~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk  317 (406)
T KOG0295|consen  245 QDGTIIASCSNDQTLRVWVVATKQCKAELR-----EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK  317 (406)
T ss_pred             CCeeEEEecCCCceEEEEEeccchhhhhhh-----ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence            456788888887 57777766642122222     345556678887641           13458999999999997

>KOG2111|consensus

Probab=85.84  E-value=4.2  Score=31.26  Aligned_cols=59  Identities=12%  Similarity=0.137  Sum_probs=38.6

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-Cee----------EEEEEEcC--------CCCCceeEEEE
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-SIK----------LLQCYADP--------DIEENFYTCAW   67 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-~~~----------~l~~~~d~--------d~~e~~y~~aW   67 (88)
                      ...||.++|+|-.     ..+|+.+.. -+||+.+.... +.+          +|-.|.|.        =....-+-|+|
T Consensus       226 ~A~iy~iaFSp~~-----s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~f  300 (346)
T KOG2111|consen  226 RADIYCIAFSPNS-----SWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAF  300 (346)
T ss_pred             hheEEEEEeCCCc-----cEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEe
Confidence            4689999999954     346666665 59999998753 233          55555543        12456677777


Q ss_pred             eecC
Q psy8253          68 SMDL   71 (88)
Q Consensus        68 s~d~   71 (88)
                      ..++
T Consensus       301 g~~~  304 (346)
T KOG2111|consen  301 GSET  304 (346)
T ss_pred             cCCC
Confidence            7663

>KOG0313|consensus

Probab=85.50  E-value=4  Score=32.11  Aligned_cols=59  Identities=12%  Similarity=0.236  Sum_probs=40.5

Q ss_pred             CCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          25 PRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        25 ~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      ..++|+-+.+ ++.+|+.-..++-.+-|+|.  .+..-+-+|.|++.  +... |+.|+.||.+|
T Consensus       312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~--gH~nwVssvkwsp~--~~~~-~~S~S~D~t~k  371 (423)
T KOG0313|consen  312 SKLLASGSSDRHIRLWDPRTGDGSVVSQSLI--GHKNWVSSVKWSPT--NEFQ-LVSGSYDNTVK  371 (423)
T ss_pred             cceeeecCCCCceeecCCCCCCCceeEEeee--cchhhhhheecCCC--CceE-EEEEecCCeEE
Confidence            4445555555 47777766655555566665  46668899999976  4444 99999999875

>KOG1407|consensus

Probab=84.76  E-value=6.7  Score=29.70  Aligned_cols=70  Identities=23%  Similarity=0.295  Sum_probs=47.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      |+.+...--+.||  .  ..+--|+|-|.+-|.|.+-+.   ++.++++.  -++.+-+|++.+++   |+ ++|+|+.|
T Consensus       144 ~~~~~e~ne~~w~--~--~nd~Fflt~GlG~v~ILsyps---Lkpv~si~--AH~snCicI~f~p~---Gr-yfA~GsAD  210 (313)
T KOG1407|consen  144 EQFKFEVNEISWN--N--SNDLFFLTNGLGCVEILSYPS---LKPVQSIK--AHPSNCICIEFDPD---GR-YFATGSAD  210 (313)
T ss_pred             hcccceeeeeeec--C--CCCEEEEecCCceEEEEeccc---cccccccc--cCCcceEEEEECCC---Cc-eEeecccc
Confidence            3344444455555  2  245567888889999999995   56666664  35677777777766   44 49999988


Q ss_pred             cEe
Q psy8253          85 AVI   87 (88)
Q Consensus        85 G~I   87 (88)
                      ..+
T Consensus       211 Alv  213 (313)
T KOG1407|consen  211 ALV  213 (313)
T ss_pred             cee
Confidence            765

>KOG4532|consensus

Probab=84.38  E-value=8.5  Score=29.37  Aligned_cols=58  Identities=19%  Similarity=0.201  Sum_probs=41.9

Q ss_pred             CCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253          24 QPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        24 ~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      ++...+.||.- +|..|+++.++ -.+++.|.- ++.+.-|+.+|+..    +-+.|++..+|.+
T Consensus       169 d~~~~~~Vgds~~Vf~y~id~~s-ey~~~~~~a-~t~D~gF~~S~s~~----~~~FAv~~Qdg~~  227 (344)
T KOG4532|consen  169 DPSWGSSVGDSRRVFRYAIDDES-EYIENIYEA-PTSDHGFYNSFSEN----DLQFAVVFQDGTC  227 (344)
T ss_pred             CCceEEEecCCCcceEEEeCCcc-ceeeeeEec-ccCCCceeeeeccC----cceEEEEecCCcE
Confidence            45668888876 69999998875 366675554 56667777899975    3457888877753

>KOG1523|consensus

Probab=84.26  E-value=2.7  Score=32.39  Aligned_cols=69  Identities=16%  Similarity=0.195  Sum_probs=46.0

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCe---eEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSI---KLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~---~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ++...-+|++.|.     ++.||+=++-| |.||-.+..++-   +.|+.=    ..-.+-+|.|-..    +.|||+|+
T Consensus        99 iNrAAt~V~WsP~-----enkFAVgSgar~isVcy~E~ENdWWVsKhikkP----irStv~sldWhpn----nVLlaaGs  165 (361)
T KOG1523|consen   99 INRAATCVKWSPK-----ENKFAVGSGARLISVCYYEQENDWWVSKHIKKP----IRSTVTSLDWHPN----NVLLAAGS  165 (361)
T ss_pred             eccceeeEeecCc-----CceEEeccCccEEEEEEEecccceehhhhhCCc----cccceeeeeccCC----cceecccc
Confidence            3444556666663     56699988887 888888876542   222211    2445889999765    56799999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      -||..|
T Consensus       166 ~D~k~r  171 (361)
T KOG1523|consen  166 TDGKCR  171 (361)
T ss_pred             cCccee
Confidence            888765

>KOG1036|consensus

Probab=83.99  E-value=8.1  Score=29.53  Aligned_cols=37  Identities=27%  Similarity=0.385  Sum_probs=27.0

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCC
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDG   44 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~   44 (88)
                      ++=+|+.|+-+|+|-+.     ..+|--.-.+.|..|++..+
T Consensus        49 ~~~~~~~plL~c~F~d~-----~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   49 LKFKHGAPLLDCAFADE-----STIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             hheecCCceeeeeccCC-----ceEEEeccCceEEEEEecCC
Confidence            45578999999999882     33444444557999999886

>KOG2055|consensus

Probab=83.75  E-value=3.2  Score=33.40  Aligned_cols=72  Identities=19%  Similarity=0.264  Sum_probs=43.4

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      +.||..+.|.|-   ++.++|+.-=....++|++....-.++-+-|--+...=+.|.|+  .|    .+.||.+|..|.|
T Consensus       257 ~fPi~~a~f~p~---G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS--hd----~~fia~~G~~G~I  327 (514)
T KOG2055|consen  257 KFPIQKAEFAPN---GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS--HD----SNFIAIAGNNGHI  327 (514)
T ss_pred             cCccceeeecCC---CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEec--CC----CCeEEEcccCceE
Confidence            579999999982   34455554444468999998764223333333222222333333  22    4589999999987


Q ss_pred             C
Q psy8253          88 R   88 (88)
Q Consensus        88 r   88 (88)
                      .
T Consensus       328 ~  328 (514)
T KOG2055|consen  328 H  328 (514)
T ss_pred             E
Confidence            3

>KOG0640|consensus

Probab=83.73  E-value=5  Score=31.22  Aligned_cols=73  Identities=12%  Similarity=0.201  Sum_probs=53.4

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCC----CC-----------eeEEEEEEcCCCCCceeEEEEe
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDG----GS-----------IKLLQCYADPDIEENFYTCAWS   68 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~----~~-----------~~~l~~~~d~d~~e~~y~~aWs   68 (88)
                      ..||.|.-+.+|+|     +..+|||=|.+ .|.|.+.+..    .+           --+|+.+-  |+-+++.++.+-
T Consensus       109 t~HK~~cR~aafs~-----DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY--DH~devn~l~FH  181 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSP-----DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY--DHVDEVNDLDFH  181 (430)
T ss_pred             eecccceeeeeeCC-----CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh--hccCcccceeec
Confidence            57999999999998     35778988877 6999988731    11           12344322  678888888876


Q ss_pred             ecCCCCceEEEEecCCcEeC
Q psy8253          69 MDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        69 ~d~~~~~plLa~aG~~G~Ir   88 (88)
                      .-    ..+|++|+.|+.||
T Consensus       182 Pr----e~ILiS~srD~tvK  197 (430)
T KOG0640|consen  182 PR----ETILISGSRDNTVK  197 (430)
T ss_pred             ch----hheEEeccCCCeEE
Confidence            54    47899999999886

>KOG0291|consensus

Probab=83.56  E-value=14  Score=31.65  Aligned_cols=70  Identities=11%  Similarity=0.294  Sum_probs=50.3

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|-..+-+++++|     +.|+.||-+.+ .|.||....+   --+..|.  ++...+-.+.|+..   ++. |.+++.
T Consensus       347 QgH~~~i~~l~YSp-----Dgq~iaTG~eDgKVKvWn~~Sg---fC~vTFt--eHts~Vt~v~f~~~---g~~-llssSL  412 (893)
T KOG0291|consen  347 QGHSDRITSLAYSP-----DGQLIATGAEDGKVKVWNTQSG---FCFVTFT--EHTSGVTAVQFTAR---GNV-LLSSSL  412 (893)
T ss_pred             cccccceeeEEECC-----CCcEEEeccCCCcEEEEeccCc---eEEEEec--cCCCceEEEEEEec---CCE-EEEeec
Confidence            44666777888776     45778877766 5888887664   2233443  57888888999887   344 889999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      ||.||
T Consensus       413 DGtVR  417 (893)
T KOG0291|consen  413 DGTVR  417 (893)
T ss_pred             CCeEE
Confidence            99986

>KOG1538|consensus

Probab=83.49  E-value=5.5  Score=33.89  Aligned_cols=71  Identities=20%  Similarity=0.318  Sum_probs=48.0

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      .+.|+|+++|||-..++...+.|++-=++ ...|.+.-.        +..+++.-+|--++=++=+ +|. .+.+||.++
T Consensus       175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--------~Igk~r~L~FdP~CisYf~-NGE-y~LiGGsdk  244 (1081)
T KOG1538|consen  175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--------QIGKDRALNFDPCCISYFT-NGE-YILLGGSDK  244 (1081)
T ss_pred             CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--------eecccccCCCCchhheecc-CCc-EEEEccCCC
Confidence            46799999999998888899999987664 677776542        2222445555556556553 343 477777777


Q ss_pred             Ee
Q psy8253          86 VI   87 (88)
Q Consensus        86 ~I   87 (88)
                      .+
T Consensus       245 ~L  246 (1081)
T KOG1538|consen  245 QL  246 (1081)
T ss_pred             ce
Confidence            64

>KOG0316|consensus

Probab=83.33  E-value=4  Score=30.58  Aligned_cols=70  Identities=13%  Similarity=0.306  Sum_probs=45.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      .-|..++..|+||-     ++.+++.-+=+ .+.+++|-... .+.+|.+.+  ..+.+-++    +.  ..+.|++|+.
T Consensus        98 rgH~aqVNtV~fNe-----esSVv~SgsfD~s~r~wDCRS~s-~ePiQilde--a~D~V~Si----~v--~~heIvaGS~  163 (307)
T KOG0316|consen   98 RGHLAQVNTVRFNE-----ESSVVASGSFDSSVRLWDCRSRS-FEPIQILDE--AKDGVSSI----DV--AEHEIVAGSV  163 (307)
T ss_pred             ccccceeeEEEecC-----cceEEEeccccceeEEEEcccCC-CCccchhhh--hcCceeEE----Ee--cccEEEeecc
Confidence            46888999999984     46677777766 49999998764 355554421  22233332    31  2455888888


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      ||.+|
T Consensus       164 DGtvR  168 (307)
T KOG0316|consen  164 DGTVR  168 (307)
T ss_pred             CCcEE
Confidence            98875

>KOG0265|consensus

Probab=83.25  E-value=7.6  Score=29.78  Aligned_cols=70  Identities=10%  Similarity=0.156  Sum_probs=47.2

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      -|+..|.++.|++     +....-+||.+ +|.+++..++   +.++.++  .+..-+.+|. -.  .-|.+||++|..|
T Consensus        88 gHsgAVM~l~~~~-----d~s~i~S~gtDk~v~~wD~~tG---~~~rk~k--~h~~~vNs~~-p~--rrg~~lv~SgsdD  154 (338)
T KOG0265|consen   88 GHSGAVMELHGMR-----DGSHILSCGTDKTVRGWDAETG---KRIRKHK--GHTSFVNSLD-PS--RRGPQLVCSGSDD  154 (338)
T ss_pred             cccceeEeeeecc-----CCCEEEEecCCceEEEEecccc---eeeehhc--cccceeeecC-cc--ccCCeEEEecCCC
Confidence            6888899999886     34567778877 6999999887   4444442  2333344444 11  1356888999989


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.+|
T Consensus       155 ~t~k  158 (338)
T KOG0265|consen  155 GTLK  158 (338)
T ss_pred             ceEE
Confidence            9875

>KOG0649|consensus

Probab=82.94  E-value=14  Score=27.98  Aligned_cols=29  Identities=21%  Similarity=0.390  Sum_probs=18.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEE
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYE   40 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~   40 (88)
                      +.|..|+|.++|.       +..+-++|.++|.=.+
T Consensus        59 qahdgpiy~~~f~-------d~~Lls~gdG~V~gw~   87 (325)
T KOG0649|consen   59 QAHDGPIYYLAFH-------DDFLLSGGDGLVYGWE   87 (325)
T ss_pred             cccCCCeeeeeee-------hhheeeccCceEEEee
Confidence            5688899999987       2334455555555444

>KOG1036|consensus

Probab=82.53  E-value=6.2  Score=30.16  Aligned_cols=66  Identities=12%  Similarity=0.338  Sum_probs=52.0

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      ..-|-+++|.|    ..+.++|+.=.+.+.+|+.+.+   ++++.|   .++..+-+|+..-+    .. +++||.+|.|
T Consensus        13 ~d~IS~v~f~~----~~~~LLvssWDgslrlYdv~~~---~l~~~~---~~~~plL~c~F~d~----~~-~~~G~~dg~v   77 (323)
T KOG1036|consen   13 EDGISSVKFSP----SSSDLLVSSWDGSLRLYDVPAN---SLKLKF---KHGAPLLDCAFADE----ST-IVTGGLDGQV   77 (323)
T ss_pred             hhceeeEEEcC----cCCcEEEEeccCcEEEEeccch---hhhhhe---ecCCceeeeeccCC----ce-EEEeccCceE
Confidence            44577889884    3477888888999999999997   777777   56778899998753    34 8889999887


Q ss_pred             C
Q psy8253          88 R   88 (88)
Q Consensus        88 r   88 (88)
                      |
T Consensus        78 r   78 (323)
T KOG1036|consen   78 R   78 (323)
T ss_pred             E
Confidence            6

>KOG0285|consensus

Probab=82.31  E-value=10  Score=30.01  Aligned_cols=71  Identities=21%  Similarity=0.184  Sum_probs=49.3

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ..-|-.=+-+|+|.|+..|     |||=+.+| +-|+++...   +++-.-  +.+-+.+-.++-|.-    .|+|-++|
T Consensus       147 i~gHlgWVr~vavdP~n~w-----f~tgs~DrtikIwDlatg---~Lkltl--tGhi~~vr~vavS~r----HpYlFs~g  212 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEW-----FATGSADRTIKIWDLATG---QLKLTL--TGHIETVRGVAVSKR----HPYLFSAG  212 (460)
T ss_pred             hhhccceEEEEeeCCCcee-----EEecCCCceeEEEEcccC---eEEEee--cchhheeeeeeeccc----CceEEEec
Confidence            3456667788999887655     99999997 889999886   222222  123444555666543    78999999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .++.||
T Consensus       213 edk~VK  218 (460)
T KOG0285|consen  213 EDKQVK  218 (460)
T ss_pred             CCCeeE
Confidence            998875

>KOG0283|consensus

Probab=81.63  E-value=6.6  Score=33.00  Aligned_cols=69  Identities=19%  Similarity=0.313  Sum_probs=51.9

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .|..=+-+|+|||-+    ++.|.+=.=+ ++.|+.++..   +|+-.+   |-.+-+-+++.++|   |+- .++|..+
T Consensus       407 ~HndfVTcVaFnPvD----DryFiSGSLD~KvRiWsI~d~---~Vv~W~---Dl~~lITAvcy~Pd---Gk~-avIGt~~  472 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVD----DRYFISGSLDGKVRLWSISDK---KVVDWN---DLRDLITAVCYSPD---GKG-AVIGTFN  472 (712)
T ss_pred             ecCCeeEEEEecccC----CCcEeecccccceEEeecCcC---eeEeeh---hhhhhheeEEeccC---Cce-EEEEEec
Confidence            466678899999976    4556654433 6999999986   777777   67788999999888   333 7788888


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |..|
T Consensus       473 G~C~  476 (712)
T KOG0283|consen  473 GYCR  476 (712)
T ss_pred             cEEE
Confidence            8754

>KOG0308|consensus

Probab=81.36  E-value=10  Score=31.79  Aligned_cols=69  Identities=17%  Similarity=0.238  Sum_probs=46.0

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .++.++|+.|-||-.     -+|+.-|.+. +.+|+|-....++-||     .+.+++-.+-=+-   +|.. |.+|+.|
T Consensus       169 G~k~siYSLA~N~t~-----t~ivsGgtek~lr~wDprt~~kimkLr-----GHTdNVr~ll~~d---DGt~-~ls~sSD  234 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTG-----TIIVSGGTEKDLRLWDPRTCKKIMKLR-----GHTDNVRVLLVND---DGTR-LLSASSD  234 (735)
T ss_pred             CCccceeeeecCCcc-----eEEEecCcccceEEeccccccceeeee-----ccccceEEEEEcC---CCCe-EeecCCC
Confidence            577889998888744     3444444443 8899988875444444     3455565554332   4677 8899999


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |+||
T Consensus       235 gtIr  238 (735)
T KOG0308|consen  235 GTIR  238 (735)
T ss_pred             ceEE
Confidence            9997

>KOG1034|consensus

Probab=80.38  E-value=6.5  Score=30.56  Aligned_cols=74  Identities=14%  Similarity=0.322  Sum_probs=56.2

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|+..|...+|.|-.    +|++-++++++ |.+.....+.=+.++-.+  +.+.+++-++-|+.+   +. .|+++|.
T Consensus       132 ~ghG~sINeik~~p~~----~qlvls~SkD~svRlwnI~~~~Cv~VfGG~--egHrdeVLSvD~~~~---gd-~i~ScGm  201 (385)
T KOG1034|consen  132 RGHGGSINEIKFHPDR----PQLVLSASKDHSVRLWNIQTDVCVAVFGGV--EGHRDEVLSVDFSLD---GD-RIASCGM  201 (385)
T ss_pred             eccCccchhhhcCCCC----CcEEEEecCCceEEEEeccCCeEEEEeccc--ccccCcEEEEEEcCC---CC-eeeccCC
Confidence            4688899999998843    78899999985 899999887333344444  357888999999988   34 5999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      |-.|+
T Consensus       202 Dhslk  206 (385)
T KOG1034|consen  202 DHSLK  206 (385)
T ss_pred             cceEE
Confidence            87764

>KOG0771|consensus

Probab=80.31  E-value=4.1  Score=32.01  Aligned_cols=59  Identities=19%  Similarity=0.377  Sum_probs=48.4

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLE   72 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~   72 (88)
                      +|...|-+..|+|     +....|++|++...|++..+.   ..++.=.|.+.+|.|-.|-.+.|..
T Consensus       184 ~~~~eV~DL~FS~-----dgk~lasig~d~~~VW~~~~g---~~~a~~t~~~k~~~~~~cRF~~d~~  242 (398)
T KOG0771|consen  184 AHHAEVKDLDFSP-----DGKFLASIGADSARVWSVNTG---AALARKTPFSKDEMFSSCRFSVDNA  242 (398)
T ss_pred             hhcCccccceeCC-----CCcEEEEecCCceEEEEeccC---chhhhcCCcccchhhhhceecccCC
Confidence            5677888888887     457899999999999999987   5556666678899999999999854

>KOG0389|consensus

Probab=80.11  E-value=0.4  Score=40.76  Aligned_cols=36  Identities=17%  Similarity=0.294  Sum_probs=28.3

Q ss_pred             eEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCC
Q psy8253          11 LFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGS   46 (88)
Q Consensus        11 ~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~   46 (88)
                      ||++.||||.+....+-.==||..+ |+||++-..+.
T Consensus       853 ihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T  889 (941)
T KOG0389|consen  853 IHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST  889 (941)
T ss_pred             EeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence            7899999999864555555678876 99999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-28
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		4e-28
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		4e-28
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		4e-28
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		5e-28

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)
Query: 2  SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
          S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 11 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 70
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
          FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 71 FYTCAWTYDSNTSHPLLAVAGSRGIIR 97

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)
Query: 2  SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
          S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 71
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
          FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 72 FYTCAWTYDSNTSHPLLAVAGSRGIIR 98

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)
Query: 2  SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
          S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 11 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 70
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
          FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 71 FYTCAWTYDSNTSHPLLAVAGSRGIIR 97

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)
Query: 2  SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
          S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 7  SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 66
Query: 62 FYTCAWSMDLESGRPLLAVAGSRAVIR 88
          FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 67 FYTCAWTYDSNTSHPLLAVAGSRGIIR 93

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 64/87 (73%)
Query: 2   SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEEN 61
           S KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +EN
Sbjct: 48  SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADEN 107
Query: 62  FYTCAWSMDLESGRPLLAVAGSRAVIR 88
           FYTCAW+ D  +  PLLAVAGSR +IR
Sbjct: 108 FYTCAWTYDSNTSHPLLAVAGSRGIIR 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	7e-22

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 85.8 bits (213), Expect = 7e-22
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 4  KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFY 63
          KEDH QPLFG QFN   K+  P +FATVGSNRV++YEC   G I+LLQ Y D D +ENFY
Sbjct: 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY 73

Query: 64 TCAWSMDLESGRPLLAVAGSRAVIR 88
          TCAW+ D  +  PLLAVAGSR +IR
Sbjct: 74 TCAWTYDSNTSHPLLAVAGSRGIIR 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.31
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.4
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.35
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.34
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	98.34
2pm7_B	297	Protein transport protein SEC13, protein transport	98.3
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.26
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.25
2pm7_B	297	Protein transport protein SEC13, protein transport	98.2
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.2
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.19
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.17
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.17
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	98.16
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.14
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.13
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.11
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.11
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.1
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.1
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.1
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.08
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.07
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.06
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.06
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.05
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.02
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.99
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.99
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.96
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.94
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.93
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.92
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.91
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.91
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.91
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	97.9
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.9
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.89
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.89
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.86
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.85
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.85
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.85
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.84
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.84
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.83
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.82
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.82
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.81
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.81
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.8
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.79
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.78
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.78
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.78
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.76
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.75
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.74
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.74
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.73
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.73
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.72
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.71
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.71
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.7
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.7
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.68
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.68
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.66
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.63
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.61
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.61
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	97.58
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.57
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.57
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.57
3jro_A	753	Fusion protein of protein transport protein SEC13	97.57
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.55
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.55
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.55
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.52
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.49
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.45
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.44
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.43
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.43
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.43
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.42
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.42
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.41
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.4
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.4
3jro_A	753	Fusion protein of protein transport protein SEC13	97.38
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.37
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.34
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.34
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.32
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	97.26
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.24
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.22
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.13
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.09
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.08
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.07
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.0
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.86
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.72
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	96.72
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.52
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	96.43
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.4
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.39
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.36
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.23
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.08
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	95.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	95.9
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.5
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.39
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	95.31
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.25
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	95.18
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	95.1
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	94.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	94.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	94.32
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	94.25
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	93.98
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.2
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.04
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	92.24
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	91.01
3kvp_A	72	Uncharacterized protein YMZC; structural genomics,	90.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	90.73
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	90.63
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	89.34
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	89.21
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	88.28
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	88.22
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	87.69
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	87.22
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	86.31
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	84.69
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	84.29
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	83.25
1k32_A	1045	Tricorn protease; protein degradation, substrate g	83.01
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	82.49
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	81.65
1k32_A	1045	Tricorn protease; protein degradation, substrate g	81.04
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	80.31

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.31  E-value=2.6e-11  Score=83.86  Aligned_cols=87  Identities=63%  Similarity=1.092  Sum_probs=76.4

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      .+++.|..+|++++|+|..+.+...++|+.+.+.|.||++..++.+..++.+.++.+++.+++++|+.+...+..+|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            46778999999999999865566789999999999999999887889999998888899999999999965546789999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      +.+|.|+
T Consensus        92 ~~dg~i~   98 (366)
T 3k26_A           92 GSRGIIR   98 (366)
T ss_dssp             ETTCEEE
T ss_pred             cCCCEEE
Confidence            9999885

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.40  E-value=3e-06  Score=57.91  Aligned_cols=74  Identities=7%  Similarity=0.044  Sum_probs=57.8

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC--eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS--IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~--~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +.|..+|.+++|+|..    .+++||+|.+ .|.|+++.....  ...++.+  ..+...+.+++|+.+    ..+|++|
T Consensus        35 ~GH~~~V~~v~~sp~~----~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l--~~h~~~V~~~~~s~d----g~~l~s~  104 (340)
T 4aow_A           35 KGHNGWVTQIATTPQF----PDMILSASRDKTIIMWKLTRDETNYGIPQRAL--RGHSHFVSDVVISSD----GQFALSG  104 (340)
T ss_dssp             CCCSSCEEEEEECTTC----TTEEEEEETTSCEEEEEECCSSSCSEEEEEEE--CCCSSCEEEEEECTT----SSEEEEE
T ss_pred             CCccCCEEEEEEeCCC----CCEEEEEcCCCeEEEEECCCCCcccceeeEEE--eCCCCCEEEEEECCC----CCEEEEE
Confidence            5699999999999843    5789999987 599999987643  2334444  247888999999976    3569999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      +.+|.|+
T Consensus       105 ~~d~~i~  111 (340)
T 4aow_A          105 SWDGTLR  111 (340)
T ss_dssp             ETTSEEE
T ss_pred             cccccce
Confidence            9999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.35  E-value=2.9e-06  Score=60.88  Aligned_cols=71  Identities=7%  Similarity=0.091  Sum_probs=57.8

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|     +.+++|+.+.+ .|.|++....   +.++.+.. .+...+++++|+.|    ..+||+|+.
T Consensus       266 ~~~~~~V~~~~~Sp-----dg~~lasgs~D~~V~iwd~~~~---~~~~~~~~-gH~~~V~~v~fSpd----g~~laS~S~  332 (365)
T 4h5i_A          266 TNRFKGITSMDVDM-----KGELAVLASNDNSIALVKLKDL---SMSKIFKQ-AHSFAITEVTISPD----STYVASVSA  332 (365)
T ss_dssp             ESSCSCEEEEEECT-----TSCEEEEEETTSCEEEEETTTT---EEEEEETT-SSSSCEEEEEECTT----SCEEEEEET
T ss_pred             cCCCCCeEeEEECC-----CCCceEEEcCCCEEEEEECCCC---cEEEEecC-cccCCEEEEEECCC----CCEEEEEeC
Confidence            46778999999998     35689988887 5999999875   67776633 47888999999987    356999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      ||.||
T Consensus       333 D~tvr  337 (365)
T 4h5i_A          333 ANTIH  337 (365)
T ss_dssp             TSEEE
T ss_pred             CCeEE
Confidence            99986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.34  E-value=5e-06  Score=55.99  Aligned_cols=78  Identities=12%  Similarity=0.260  Sum_probs=60.4

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      ++.+.|..+|.+++|+|     ..+.+|+.+.+ .|.||++.... ..++++.+.  .+...+.+++|+..  ....+|+
T Consensus         5 ~~~~gH~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~--~d~~~l~   75 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDF-----YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR--AHDSSIVAIDWASP--EYGRIIA   75 (351)
T ss_dssp             CEECCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE--CCSSCEEEEEECCG--GGCSEEE
T ss_pred             ccCcccccceeEEEEcC-----CCCEEEEeeCCCeEEEEECCCCCCcceecceec--cCCCcEEEEEEcCC--CCCCEEE
Confidence            35578999999999998     24578888876 69999998754 346666665  47888999999974  1145799


Q ss_pred             EecCCcEeC
Q psy8253          80 VAGSRAVIR   88 (88)
Q Consensus        80 ~aG~~G~Ir   88 (88)
                      +|+.+|.|+
T Consensus        76 s~~~dg~v~   84 (351)
T 3f3f_A           76 SASYDKTVK   84 (351)
T ss_dssp             EEETTSCEE
T ss_pred             EEcCCCeEE
Confidence            999999875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=98.34  E-value=4.5e-06  Score=59.46  Aligned_cols=73  Identities=19%  Similarity=0.359  Sum_probs=58.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe--EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR--VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~--v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      .+.|..++.+++|+|     +..++|+++.+.  |.|+++...   +.++.+....+...+++++|+.+    ..+|++|
T Consensus       191 ~~~h~~~v~~~~~s~-----~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~~g~h~~~v~~~~~s~~----~~~l~s~  258 (355)
T 3vu4_A          191 IKAHTNPIKMVRLNR-----KSDMVATCSQDGTIIRVFKTEDG---VLVREFRRGLDRADVVDMKWSTD----GSKLAVV  258 (355)
T ss_dssp             ECCCSSCEEEEEECT-----TSSEEEEEETTCSEEEEEETTTC---CEEEEEECTTCCSCEEEEEECTT----SCEEEEE
T ss_pred             EEccCCceEEEEECC-----CCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCCCCCcEEEEEECCC----CCEEEEE
Confidence            467899999999998     256899999885  999999876   56666653236788999999987    3569999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      +.+|.||
T Consensus       259 s~d~~v~  265 (355)
T 3vu4_A          259 SDKWTLH  265 (355)
T ss_dssp             ETTCEEE
T ss_pred             ECCCEEE
Confidence            9999885

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.30  E-value=3.3e-06  Score=58.45  Aligned_cols=78  Identities=13%  Similarity=0.232  Sum_probs=56.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|...  ..+++|+++.+ .|.|+++.........+..........+++++|+.+    ..+||+||.
T Consensus       201 ~~H~~~V~~v~~sp~~~--~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~las~~~  274 (297)
T 2pm7_B          201 EGHSDWVRDVAWSPTVL--LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGG  274 (297)
T ss_dssp             CCCSSCEEEEEECCCCS--SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS----SCCEEEEET
T ss_pred             cCCCCceEEEEECCCCC--CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC----CCEEEEEcC
Confidence            56889999999999642  35789999877 599999876432111122222345778999999987    346999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.||
T Consensus       275 D~~v~  279 (297)
T 2pm7_B          275 DNKVT  279 (297)
T ss_dssp             TSCEE
T ss_pred             CCcEE
Confidence            99885

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.26  E-value=3.6e-06  Score=60.37  Aligned_cols=72  Identities=15%  Similarity=0.238  Sum_probs=56.4

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++.+++|+|..    .+++|+++.+ .|.|++....   ++++.   ..+...+++++|+.+   +..+|++||
T Consensus       253 ~~~h~~~v~~v~fsp~g----~~~lasgs~D~~i~vwd~~~~---~~~~~---~~H~~~V~~v~~sp~---~~~llas~s  319 (344)
T 4gqb_B          253 SAVHSQCVTGLVFSPHS----VPFLASLSEDCSLAVLDSSLS---ELFRS---QAHRDFVRDATWSPL---NHSLLTTVG  319 (344)
T ss_dssp             EECCSSCEEEEEECSSS----SCCEEEEETTSCEEEECTTCC---EEEEE---CCCSSCEEEEEECSS---STTEEEEEE
T ss_pred             EcCCCCCEEEEEEccCC----CeEEEEEeCCCeEEEEECCCC---cEEEE---cCCCCCEEEEEEeCC---CCeEEEEEc
Confidence            35688999999999842    4678988876 5999988764   44443   367889999999977   456799999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .||.|+
T Consensus       320 ~D~~v~  325 (344)
T 4gqb_B          320 WDHQVV  325 (344)
T ss_dssp             TTSCEE
T ss_pred             CCCeEE
Confidence            999885

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.25  E-value=7e-06  Score=57.68  Aligned_cols=74  Identities=19%  Similarity=0.323  Sum_probs=54.4

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC-CeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG-SIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~-~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      .+.|..++.+++|+|-     .+.+|+++.+ .|.|+++...+ ..+.++.+.  .+...+.+++|+.+    ..+|++|
T Consensus       103 ~~~h~~~V~~v~~sp~-----g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~----~~~l~s~  171 (330)
T 2hes_X          103 IEGHENEVKGVAWSND-----GYYLATCSRDKSVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPS----EALLASS  171 (330)
T ss_dssp             EC----CEEEEEECTT-----SCEEEEEETTSCEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSS----SSEEEEE
T ss_pred             EcCCCCcEEEEEECCC-----CCEEEEEeCCCEEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCC----CCEEEEE
Confidence            3578899999999983     5689998876 69999996543 356666653  46788999999986    3479999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      |.+|.||
T Consensus       172 s~D~~i~  178 (330)
T 2hes_X          172 SYDDTVR  178 (330)
T ss_dssp             ETTSCEE
T ss_pred             cCCCeEE
Confidence            9999885

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.20  E-value=7.9e-06  Score=56.50  Aligned_cols=76  Identities=17%  Similarity=0.251  Sum_probs=57.3

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +.+.|..++.+++|+|.     .+.+|+.|.+ .|.|+++.... .+.++.+.  .+...+++++|+.+.  ...+||+|
T Consensus         4 ~~~~h~~~V~~~~~s~~-----g~~las~s~D~~v~iw~~~~~~-~~~~~~l~--gH~~~V~~v~~s~~~--~g~~l~s~   73 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYY-----GKRMATCSSDKTIKIFEVEGET-HKLIDTLT--GHEGPVWRVDWAHPK--FGTILASC   73 (297)
T ss_dssp             ECCSCSSCEEEEEECTT-----SSEEEEEETTSCEEEEEBCSSC-BCCCEEEC--CCSSCEEEEEECCGG--GCSEEEEE
T ss_pred             eccCCcCceEEEEECCC-----CCEEEEEeCCCEEEEEecCCCC-cEEEEEEc--cccCCeEEEEecCCC--cCCEEEEE
Confidence            45679999999999974     4578888877 59999997542 23444443  478889999998652  23579999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      |.||.||
T Consensus        74 s~D~~v~   80 (297)
T 2pm7_B           74 SYDGKVM   80 (297)
T ss_dssp             ETTTEEE
T ss_pred             cCCCEEE
Confidence            9999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.20  E-value=9.2e-06  Score=55.13  Aligned_cols=74  Identities=16%  Similarity=0.259  Sum_probs=59.9

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      .|..++.+++|+|     ..+.+|+.+.+.|.||++...+....++.+....+...+.+++|+.+    ..+|++|+.+|
T Consensus        49 ~h~~~v~~~~~~~-----~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~  119 (337)
T 1gxr_A           49 NHGEVVCAVTISN-----PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD----GCTLIVGGEAS  119 (337)
T ss_dssp             CCSSCCCEEEECS-----SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT----SSEEEEEESSS
T ss_pred             cCCCceEEEEEec-----CCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC----CCEEEEEcCCC
Confidence            5888999999987     35678888888999999998765555666655567889999999986    35699999999


Q ss_pred             EeC
Q psy8253          86 VIR   88 (88)
Q Consensus        86 ~Ir   88 (88)
                      .|+
T Consensus       120 ~i~  122 (337)
T 1gxr_A          120 TLS  122 (337)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.19  E-value=1.2e-05  Score=56.47  Aligned_cols=73  Identities=14%  Similarity=0.267  Sum_probs=56.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++++++|+|-       ++|+.|.+ .|.|+++..+ ..++++.+....+...+.+++|+.+    ..+||+|+
T Consensus        10 ~~~h~~~v~~~~~s~~-------~las~~~D~~i~lw~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp~----~~~las~s   77 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQG-------ILATGSTDRKIKLVSVKYD-DFTLIDVLDETAHKKAIRSVAWRPH----TSLLAAGS   77 (330)
T ss_dssp             EECCSSCEEEEEEETT-------EEEEEESSSCEEEEECSSS-CCEEEEEECTTCCCSCEEEEEECTT----SSEEEEEE
T ss_pred             eccCCCceeeeccCCC-------EEEEEcCCCEEEEEEecCC-CeEEEEEEecCCccCCEEEEEECCC----CCEEEEEe
Confidence            3579999999999862       79999877 5999999764 3355555533337889999999987    35799999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.||
T Consensus        78 ~D~~v~   83 (330)
T 2hes_X           78 FDSTVS   83 (330)
T ss_dssp             TTSCEE
T ss_pred             CCCcEE
Confidence            999875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.17  E-value=1.3e-05  Score=56.63  Aligned_cols=74  Identities=15%  Similarity=0.274  Sum_probs=59.1

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++.+++|+|     ..+.+|+++.+ .|.|+++......+.++.+.  .+...+.+++|+.+    ..+|++|+
T Consensus       101 ~~~h~~~v~~v~~sp-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~~p~----~~~l~s~s  169 (345)
T 3fm0_A          101 LEGHENEVKSVAWAP-----SGNLLATCSRDKSVWVWEVDEEDEYECVSVLN--SHTQDVKHVVWHPS----QELLASAS  169 (345)
T ss_dssp             ECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEEECTTSCEEEEEEEC--CCCSCEEEEEECSS----SSCEEEEE
T ss_pred             ccCCCCCceEEEEeC-----CCCEEEEEECCCeEEEEECCCCCCeEEEEEec--CcCCCeEEEEECCC----CCEEEEEe
Confidence            357889999999998     25689998877 59999998776666666653  46788999999987    34699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.||
T Consensus       170 ~d~~i~  175 (345)
T 3fm0_A          170 YDDTVK  175 (345)
T ss_dssp             TTSCEE
T ss_pred             CCCcEE
Confidence            999875

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.17  E-value=1.5e-05  Score=56.14  Aligned_cols=77  Identities=16%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..+|++++|+|.... ...++|+.|.+ .|.|+++... .+.+...+  +.+...+.+++|+.+    .++|++||
T Consensus        28 ~~~H~~~V~~v~~~~~~~~-~~~~l~tgs~D~~v~vW~~~~~-~~~~~~~l--~gh~~~v~~~~~~~~----~~~l~s~s   99 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKE-NSETVVTGSLDDLVKVWKWRDE-RLDLQWSL--EGHQLGVVSVDISHT----LPIAASSS   99 (321)
T ss_dssp             TTSSSSCEEEEEEC--------CEEEEEETTSCEEEEEEETT-EEEEEEEE--CCCSSCEEEEEECSS----SSEEEEEE
T ss_pred             cccCCCcEEEEEEecCCCC-CCCEEEEEcCCCCEEEEECCCC-Ceeeeeee--ccCCCCEEEEEECCC----CCEEEEEe
Confidence            3579999999999996543 56789999877 5999998764 22333333  468889999999976    46899999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.||
T Consensus       100 ~D~~i~  105 (321)
T 3ow8_A          100 LDAHIR  105 (321)
T ss_dssp             TTSEEE
T ss_pred             CCCcEE
Confidence            999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=98.16  E-value=3.9e-06  Score=60.53  Aligned_cols=77  Identities=18%  Similarity=0.262  Sum_probs=59.1

Q ss_pred             cccCCCCeEEEEEecCCCC---CCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           4 KEDHGQPLFGAQFNHLLKD---DQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~---~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      .+.|...|.+++|+|....   .+.+++|++|.++ |.|+++...+  .++..+   .....+.+++|+.+   +..+|+
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~--~~~~~~---~~~~~v~~v~~~p~---~~~~l~  203 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG--PILAGY---PLSSPGISVQFRPS---NPNQLI  203 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE--EEEEEE---ECSSCEEEEEEETT---EEEEEE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc--eeeeec---CCCCCcEEEEECCC---CCceEE
Confidence            3568999999999996542   2467999999985 9999998764  333333   24567899999976   345799


Q ss_pred             EecCCcEeC
Q psy8253          80 VAGSRAVIR   88 (88)
Q Consensus        80 ~aG~~G~Ir   88 (88)
                      +|+.+|.||
T Consensus       204 ~~~~d~~v~  212 (393)
T 4gq1_A          204 VGERNGNIR  212 (393)
T ss_dssp             EEETTSEEE
T ss_pred             ecCCCCEEE
Confidence            999999885

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.14  E-value=2.1e-05  Score=53.88  Aligned_cols=76  Identities=7%  Similarity=0.010  Sum_probs=56.1

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +.+.|..++++++|+|-     .+.+|+.+. +.|.||++....+...++...  .+...+.+++|+.+   +..+|++|
T Consensus         6 ~~~~h~~~v~~~~~s~~-----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~---~~~~l~~~   75 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPS-----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDN---TDLQIYVG   75 (342)
T ss_dssp             CSSCCSSCEEEEEEEGG-----GTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEES---SSEEEEEE
T ss_pred             cccCCCCcEEEEEEcCC-----CCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCC---CCcEEEEE
Confidence            45689999999999992     345666654 579999998875433333332  46788999999987   34279999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      +.+|.|+
T Consensus        76 ~~dg~i~   82 (342)
T 1yfq_A           76 TVQGEIL   82 (342)
T ss_dssp             ETTSCEE
T ss_pred             cCCCeEE
Confidence            9999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.13  E-value=9.6e-06  Score=55.60  Aligned_cols=76  Identities=16%  Similarity=0.285  Sum_probs=54.7

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeC-----CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceE
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVG-----SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPL   77 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-----~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~pl   77 (88)
                      +.+.|..++++++|+|..    .. ++++|     .+.|.||++.... +..+..+   .+...+.+++|+.+..+ ..+
T Consensus        13 ~~~~h~~~v~~~~~~p~~----~~-l~~~~s~~~~d~~v~iw~~~~~~-~~~~~~~---~~~~~v~~~~~~~~~~~-~~~   82 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCS----AK-FVTMGNFARGTGVIQLYEIQHGD-LKLLREI---EKAKPIKCGTFGATSLQ-QRY   82 (357)
T ss_dssp             EEEECSSCEEEEEECTTS----SE-EEEEEC--CCCEEEEEEEECSSS-EEEEEEE---EESSCEEEEECTTCCTT-TCC
T ss_pred             hccCCCCceEEEEEcCCC----ce-EEEecCccCCCcEEEEEeCCCCc-ccceeee---cccCcEEEEEEcCCCCC-Cce
Confidence            446699999999999943    23 44555     5689999998753 3444444   35788999999987322 355


Q ss_pred             EEEecCCcEeC
Q psy8253          78 LAVAGSRAVIR   88 (88)
Q Consensus        78 La~aG~~G~Ir   88 (88)
                      |++|+.+|.|+
T Consensus        83 l~~~~~dg~i~   93 (357)
T 3i2n_A           83 LATGDFGGNLH   93 (357)
T ss_dssp             EEEEETTSCEE
T ss_pred             EEEecCCCeEE
Confidence            99999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.11  E-value=2e-05  Score=54.27  Aligned_cols=76  Identities=17%  Similarity=0.264  Sum_probs=58.3

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +.+.|..+|.+++|+|.     .+.+|+.+.+ .|.||++... ..+.++.+.  .+...+.+++|+.+.  ...+|++|
T Consensus         6 ~~~~h~~~v~~~~~s~~-----~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~--~h~~~v~~~~~~~~~--~~~~l~s~   75 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYY-----GKRLATCSSDKTIKIFEVEGE-THKLIDTLT--GHEGPVWRVDWAHPK--FGTILASC   75 (379)
T ss_dssp             CEEECCCCEEEEEECSS-----SSEEEEEETTSCEEEEEEETT-EEEEEEEEC--CCSSCEEEEEECCGG--GCSEEEEE
T ss_pred             EecCCcccEEEEEEcCC-----CCEEEEEECCCcEEEEecCCC-cceeeeEec--CCCCcEEEEEeCCCC--CCCEEEEe
Confidence            45789999999999983     4578888755 6999999753 235566553  467889999999762  24679999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      +.+|.|+
T Consensus        76 ~~dg~v~   82 (379)
T 3jrp_A           76 SYDGKVL   82 (379)
T ss_dssp             ETTSCEE
T ss_pred             ccCCEEE
Confidence            9999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.11  E-value=1.3e-05  Score=57.17  Aligned_cols=72  Identities=13%  Similarity=0.195  Sum_probs=55.8

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++.+++|+|-.    .+++|+++.+ .|.|++....   ++++..   .+...+++++|++.  ++ .+||+||
T Consensus       265 ~~~~~~~v~~l~~sp~~----~~~lasgs~D~~i~iwd~~~~---~~~~~~---~H~~~V~~vafsP~--d~-~~l~s~s  331 (357)
T 4g56_B          265 SAVHSQNITGLAYSYHS----SPFLASISEDCTVAVLDADFS---EVFRDL---SHRDFVTGVAWSPL--DH-SKFTTVG  331 (357)
T ss_dssp             ECCCSSCEEEEEECSSS----SCCEEEEETTSCEEEECTTSC---EEEEEC---CCSSCEEEEEECSS--ST-TEEEEEE
T ss_pred             EeccceeEEEEEEcCCC----CCEEEEEeCCCEEEEEECCCC---cEeEEC---CCCCCEEEEEEeCC--CC-CEEEEEc
Confidence            35688899999999843    5678988875 6999998765   556554   57788999999963  23 4699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .||.||
T Consensus       332 ~Dg~v~  337 (357)
T 4g56_B          332 WDHKVL  337 (357)
T ss_dssp             TTSCEE
T ss_pred             CCCeEE
Confidence            999885

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.10  E-value=8.4e-06  Score=56.96  Aligned_cols=76  Identities=21%  Similarity=0.308  Sum_probs=53.4

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +.+.|..+|.+++|+|.     .+.+|+.+.+ .|.|+++...+ ...++.+.  .+...+++++|+.+.  ...+|++|
T Consensus         8 ~~~~H~~~V~~v~~s~~-----g~~lasgs~D~~v~lwd~~~~~-~~~~~~l~--gH~~~V~~v~~~~~~--~~~~l~s~   77 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYY-----GTRLATCSSDRSVKIFDVRNGG-QILIADLR--GHEGPVWQVAWAHPM--YGNILASC   77 (316)
T ss_dssp             ------CCEEEEEECGG-----GCEEEEEETTTEEEEEEEETTE-EEEEEEEE--CCSSCEEEEEECCGG--GSSCEEEE
T ss_pred             ecccccCeEEEeeEcCC-----CCEEEEEeCCCeEEEEEecCCC-cEEEEEEc--CCCccEEEEEeCCCC--CCCEEEEE
Confidence            45689999999999984     4578998877 59999987642 23455554  478899999998652  13469999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      |.||.||
T Consensus        78 s~D~~v~   84 (316)
T 3bg1_A           78 SYDRKVI   84 (316)
T ss_dssp             ETTSCEE
T ss_pred             ECCCEEE
Confidence            9999875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.10  E-value=3.3e-05  Score=52.83  Aligned_cols=77  Identities=12%  Similarity=0.107  Sum_probs=57.8

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +.+.|..+|.+++|+|...  ..+.+|+.+.+ .|.||++...+. .+.+.+.  .+...+.+++|+.+    ..+|++|
T Consensus        34 ~~~~h~~~v~~~~~~~~~~--~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~--~h~~~v~~~~~~~~----~~~l~s~  104 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTL--PGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQ--MHTGPVLDVCWSDD----GSKVFTA  104 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTS--SSEEEEEEETTSEEEEEEECTTSC-EEEEEEE--ECSSCEEEEEECTT----SSEEEEE
T ss_pred             eccCCCCceEEEEEcCCCC--CceEEEEECCCCcEEEEEcCCCCc-eeEEEec--cccCCEEEEEECcC----CCEEEEE
Confidence            4578999999999999542  24678888765 699999987433 3323333  36788999999986    3569999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      +.+|.|+
T Consensus       105 ~~dg~v~  111 (368)
T 3mmy_A          105 SCDKTAK  111 (368)
T ss_dssp             ETTSEEE
T ss_pred             cCCCcEE
Confidence            9999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.10  E-value=1.6e-05  Score=55.52  Aligned_cols=74  Identities=23%  Similarity=0.421  Sum_probs=55.9

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC--C--eeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG--S--IKLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~--~--~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      +.|..++.+++|+|.... ..+.+|+++.+ .|.|+++....  .  .++++.     .+..+++++|+.+    ..+||
T Consensus       209 ~~h~~~V~~v~~sp~~~~-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-----~~~~v~~v~~sp~----g~~la  278 (316)
T 3bg1_A          209 EAHSDWVRDVAWAPSIGL-PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK-----FNDVVWHVSWSIT----ANILA  278 (316)
T ss_dssp             BCCSSCEEEEECCCCSSC-SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE-----CSSCEEEEEECTT----TCCEE
T ss_pred             ccCCCceEEEEecCCCCC-CCceEEEEcCCCeEEEEEccCccccchhhhhhhc-----CCCcEEEEEEcCC----CCEEE
Confidence            568889999999996532 35789999877 69999987621  1  234443     3678999999987    35699


Q ss_pred             EecCCcEeC
Q psy8253          80 VAGSRAVIR   88 (88)
Q Consensus        80 ~aG~~G~Ir   88 (88)
                      +||.+|.||
T Consensus       279 s~~~D~~v~  287 (316)
T 3bg1_A          279 VSGGDNKVT  287 (316)
T ss_dssp             EEESSSCEE
T ss_pred             EEcCCCeEE
Confidence            999999885

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.08  E-value=2.7e-05  Score=54.50  Aligned_cols=77  Identities=6%  Similarity=0.001  Sum_probs=58.3

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC---CeeEEEEEEcCCCCCceeEEEEeecCCCCc---
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG---SIKLLQCYADPDIEENFYTCAWSMDLESGR---   75 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~---~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~---   75 (88)
                      ..+.|..+|++++|+|       +.+|+.+.+ .|.||++....   +.+.++.+.  .+...+.+++|+.+.....   
T Consensus        11 ~~~~h~~~i~~~~~~~-------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~g~~~   81 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN-------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFEL   81 (397)
T ss_dssp             ESSCSSSCEEEEEECS-------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEE
T ss_pred             hhhhhhcCeEEEEecC-------CeEEEEcCCCEEEEEECCCcccccCCCcceEEe--cCCCcEEEEEEecccccCCccc
Confidence            3467999999999987       578888876 79999998864   133455554  4678899999998722223   


Q ss_pred             eEEEEecCCcEeC
Q psy8253          76 PLLAVAGSRAVIR   88 (88)
Q Consensus        76 plLa~aG~~G~Ir   88 (88)
                      .+|++|+.+|.|+
T Consensus        82 ~~l~s~~~dg~i~   94 (397)
T 1sq9_A           82 CLVATTSFSGDLL   94 (397)
T ss_dssp             EEEEEEETTSCEE
T ss_pred             cEEEEEcCCCCEE
Confidence            6799999999874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.07  E-value=3.1e-05  Score=54.68  Aligned_cols=73  Identities=14%  Similarity=0.226  Sum_probs=56.5

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++.+++|+|     ..+.+|+.+.+ .|.|++.... ..+.++.+.  .+...+.+++|+.+    ..+|++||
T Consensus        57 ~~~h~~~v~~~~~sp-----~g~~l~s~s~D~~v~iw~~~~~-~~~~~~~~~--~h~~~v~~v~~sp~----~~~l~s~s  124 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSP-----CGNYLASASFDATTCIWKKNQD-DFECVTTLE--GHENEVKSVAWAPS----GNLLATCS  124 (345)
T ss_dssp             CSSCSSCEEEEEECT-----TSSEEEEEETTSCEEEEEECCC--EEEEEEEC--CCSSCEEEEEECTT----SSEEEEEE
T ss_pred             ccccCCcEEEEEECC-----CCCEEEEEECCCcEEEEEccCC-CeEEEEEcc--CCCCCceEEEEeCC----CCEEEEEE
Confidence            367899999999998     24678888876 5999998765 345555553  57888999999986    35699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.||
T Consensus       125 ~D~~v~  130 (345)
T 3fm0_A          125 RDKSVW  130 (345)
T ss_dssp             TTSCEE
T ss_pred             CCCeEE
Confidence            999875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.06  E-value=4e-05  Score=53.89  Aligned_cols=72  Identities=15%  Similarity=0.152  Sum_probs=57.1

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|.     ...||+.+.+ .|.|+++...   +.+..+..+.....+.+++|+.+    ..+|++|+.
T Consensus       223 ~~h~~~v~~v~~~p~-----~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~g~~  290 (340)
T 1got_B          223 TGHESDINAICFFPN-----GNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKS----GRLLLAGYD  290 (340)
T ss_dssp             CCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECTT----SSEEEEEET
T ss_pred             cCCcCCEEEEEEcCC-----CCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEECCC----CCEEEEECC
Confidence            568889999999983     4678888877 5999999876   55666655555667999999987    356999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       291 d~~i~  295 (340)
T 1got_B          291 DFNCN  295 (340)
T ss_dssp             TSEEE
T ss_pred             CCeEE
Confidence            99875

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.06  E-value=3e-05  Score=54.55  Aligned_cols=70  Identities=11%  Similarity=0.252  Sum_probs=55.8

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|-     .+.+|+.+.+ .|.|+++...   +.++.+.  .+...+++++|+.+    ..+|++||.
T Consensus       245 ~~h~~~v~~~~~sp~-----~~~l~s~s~D~~v~iwd~~~~---~~~~~~~--~h~~~v~~v~~s~~----g~~l~s~~~  310 (321)
T 3ow8_A          245 SGHASWVLNVAFCPD-----DTHFVSSSSDKSVKVWDVGTR---TCVHTFF--DHQDQVWGVKYNGN----GSKIVSVGD  310 (321)
T ss_dssp             CCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTT---EEEEEEC--CCSSCEEEEEECTT----SSEEEEEET
T ss_pred             cCCCCceEEEEECCC-----CCEEEEEeCCCcEEEEeCCCC---EEEEEEc--CCCCcEEEEEECCC----CCEEEEEeC
Confidence            468889999999983     4567887776 6999999875   6666664  47788999999976    346999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.||
T Consensus       311 d~~i~  315 (321)
T 3ow8_A          311 DQEIH  315 (321)
T ss_dssp             TCCEE
T ss_pred             CCeEE
Confidence            99885

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.05  E-value=2.3e-05  Score=59.58  Aligned_cols=73  Identities=21%  Similarity=0.390  Sum_probs=56.2

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcC-----CCCCceeEEEEeecCCCCceE
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADP-----DIEENFYTCAWSMDLESGRPL   77 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~-----d~~e~~y~~aWs~d~~~~~pl   77 (88)
                      .+.|...+.+++|+|-     .+++|+.|.+ .|.|++.....   .++.+...     .+...+++++|+.|    ..+
T Consensus       186 l~~H~~~V~~v~fspd-----g~~las~s~D~~i~lwd~~~g~---~~~~~~~~~~~~~~h~~~V~~v~~spd----g~~  253 (611)
T 1nr0_A          186 FGEHTKFVHSVRYNPD-----GSLFASTGGDGTIVLYNGVDGT---KTGVFEDDSLKNVAHSGSVFGLTWSPD----GTK  253 (611)
T ss_dssp             ECCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTCC---EEEECBCTTSSSCSSSSCEEEEEECTT----SSE
T ss_pred             eccccCceEEEEECCC-----CCEEEEEECCCcEEEEECCCCc---EeeeeccccccccccCCCEEEEEECCC----CCE
Confidence            3578899999999982     4689998877 59999987763   34444221     47789999999987    346


Q ss_pred             EEEecCCcEeC
Q psy8253          78 LAVAGSRAVIR   88 (88)
Q Consensus        78 La~aG~~G~Ir   88 (88)
                      |++||.||.||
T Consensus       254 l~s~s~D~~v~  264 (611)
T 1nr0_A          254 IASASADKTIK  264 (611)
T ss_dssp             EEEEETTSEEE
T ss_pred             EEEEeCCCeEE
Confidence            99999999885

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.02  E-value=2.3e-05  Score=56.81  Aligned_cols=71  Identities=11%  Similarity=0.278  Sum_probs=55.6

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ...|..++.+++|+|.     .+++|+.|.+ .|.|+++....   .++.+.  .+.+.+.+++|+.+    ..+|++||
T Consensus       104 l~gh~~~V~~~~~~p~-----~~~l~s~s~Dg~i~vwd~~~~~---~~~~l~--~h~~~V~~v~~~~~----~~~l~sgs  169 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPV-----FSVMVSASEDATIKVWDYETGD---FERTLK--GHTDSVQDISFDHS----GKLLASCS  169 (410)
T ss_dssp             EECCSSCEEEEEECSS-----SSEEEEEESSSCEEEEETTTCC---CCEEEC--CCSSCEEEEEECTT----SSEEEEEE
T ss_pred             ecccCCcEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCc---EEEEEe--ccCCcEEEEEEcCC----CCEEEEEe
Confidence            3578999999999984     3578888776 69999998763   334443  46788999999865    34799999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .||.||
T Consensus       170 ~D~~i~  175 (410)
T 1vyh_C          170 ADMTIK  175 (410)
T ss_dssp             TTSCCC
T ss_pred             CCCeEE
Confidence            999886

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.00  E-value=4.9e-05  Score=52.12  Aligned_cols=71  Identities=20%  Similarity=0.320  Sum_probs=55.1

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++.+++|+|-     .+.+|+.+.+ .|.|++....   +.++.+.  .+...+.+++|+.+    ..+|++|+
T Consensus        19 ~~gh~~~v~~~~~s~~-----~~~l~s~~~dg~i~iw~~~~~---~~~~~~~--~h~~~v~~~~~~~~----~~~l~s~~   84 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPN-----GEWLASSSADKLIKIWGAYDG---KFEKTIS--GHKLGISDVAWSSD----SNLLVSAS   84 (312)
T ss_dssp             ECCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTC---CEEEEEC--CCSSCEEEEEECTT----SSEEEEEE
T ss_pred             EcccCCcEEEEEECCC-----CCEEEEeeCCCeEEEEeCCCc---ccchhhc--cCCCceEEEEEcCC----CCEEEEEC
Confidence            3578899999999982     4578888866 6999998765   3444443  46788999999986    35699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus        85 ~d~~i~   90 (312)
T 4ery_A           85 DDKTLK   90 (312)
T ss_dssp             TTSEEE
T ss_pred             CCCEEE
Confidence            999885

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.99  E-value=2.7e-05  Score=57.35  Aligned_cols=69  Identities=22%  Similarity=0.395  Sum_probs=54.1

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +-|..+|.+++|+|     +.+.+|+.+.+ .|.|++.  ++  ++++.+.  .+...+.+++|+.|    ..+||+||.
T Consensus        13 ~GH~~~V~~~a~sp-----dg~~las~~~d~~v~iWd~--~~--~~~~~l~--gh~~~V~~l~fspd----g~~las~~~   77 (577)
T 2ymu_A           13 EAHSSSVRGVAFSP-----DGQTIASASDDKTVKLWNR--NG--QLLQTLT--GHSSSVWGVAFSPD----GQTIASASD   77 (577)
T ss_dssp             CCCSSCEEEEEECT-----TSSCEEEEETTSEEEEECT--TS--CEEEEEE--CCSSCEEEEEECTT----SSEEEEEET
T ss_pred             CCCCCcEEEEEECC-----CCCEEEEEeCCCEEEEEEC--CC--CEEEEEe--CCCCCEEEEEECCC----CCEEEEEeC
Confidence            56889999999998     34678998886 5999984  22  4566664  46788999999987    356999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.||
T Consensus        78 d~~i~   82 (577)
T 2ymu_A           78 DKTVK   82 (577)
T ss_dssp             TSCEE
T ss_pred             CCEEE
Confidence            99875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.99  E-value=5.5e-05  Score=53.85  Aligned_cols=75  Identities=21%  Similarity=0.351  Sum_probs=57.4

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCe----eEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSI----KLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~----~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      ..|..++.+++|+|+.    ..++|+.+.+ .|.|+++...+..    +.++.+.  .+...+.+++|+.+   +..+|+
T Consensus        78 ~~h~~~V~~~~~~p~~----~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~---~~~~l~  148 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHN----DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE--GHTKRVGIVAWHPT---AQNVLL  148 (402)
T ss_dssp             CCCSSCEEEEEECTTC----TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE--CCSSCEEEEEECSS---BTTEEE
T ss_pred             ecCCCCEEEEEeCCCC----CCEEEEEeCCCeEEEEEccCCCCccccCCceEEec--CCCCeEEEEEECcC---CCCEEE
Confidence            5688999999999964    4678888866 6999999886321    3344443  46788999999987   345799


Q ss_pred             EecCCcEeC
Q psy8253          80 VAGSRAVIR   88 (88)
Q Consensus        80 ~aG~~G~Ir   88 (88)
                      +|+.+|.|+
T Consensus       149 s~~~dg~i~  157 (402)
T 2aq5_A          149 SAGCDNVIL  157 (402)
T ss_dssp             EEETTSCEE
T ss_pred             EEcCCCEEE
Confidence            999999874

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.97  E-value=6.4e-05  Score=53.81  Aligned_cols=73  Identities=8%  Similarity=0.064  Sum_probs=53.0

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      .+..++.+++|+|-     ..+++....+.|.|+++..++.+..++... ..++..+.+++|+.+    ..+|++|+.+|
T Consensus        80 ~~~~~v~~~~~s~d-----~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~-~~H~~~V~~v~~spd----g~~l~sgs~d~  149 (344)
T 4gqb_B           80 QTEAGVADLTWVGE-----RGILVASDSGAVELWELDENETLIVSKFCK-YEHDDIVSTVSVLSS----GTQAVSGSKDI  149 (344)
T ss_dssp             EESSCEEEEEEETT-----TEEEEEETTSEEEEEEECTTSSCEEEEEEE-ECCSSCEEEEEECTT----SSEEEEEETTS
T ss_pred             ccCCCEEEEEEeCC-----CeEEEEECCCEEEEEeccCCCceeEeeccc-cCCCCCEEEEEECCC----CCEEEEEeCCC
Confidence            34568999999982     344444445579999998876555544332 257889999999977    34699999999


Q ss_pred             EeC
Q psy8253          86 VIR   88 (88)
Q Consensus        86 ~Ir   88 (88)
                      .||
T Consensus       150 ~i~  152 (344)
T 4gqb_B          150 CIK  152 (344)
T ss_dssp             CEE
T ss_pred             eEE
Confidence            885

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.96  E-value=7.9e-05  Score=51.56  Aligned_cols=71  Identities=13%  Similarity=0.117  Sum_probs=55.3

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..+|.+++|+|-     .+.+|+.+.+ .|.|++....   +.++.+.  .++..+.+++|+.+    ..+|++|+
T Consensus         9 ~~~h~~~V~~~~fsp~-----~~~l~s~~~dg~v~lWd~~~~---~~~~~~~--~~~~~v~~~~~~~~----~~~l~s~s   74 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPT-----EPWVLTTLYSGRVELWNYETQ---VEVRSIQ--VTETPVRAGKFIAR----KNWIIVGS   74 (304)
T ss_dssp             EEEECSCEEEEEECSS-----SSEEEEEETTSEEEEEETTTT---EEEEEEE--CCSSCEEEEEEEGG----GTEEEEEE
T ss_pred             ecCCCCceEEEEECCC-----CCEEEEEcCCCcEEEEECCCC---ceeEEee--ccCCcEEEEEEeCC----CCEEEEEC
Confidence            4678899999999983     4567777655 7999999876   4555554  35677999999987    35699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.||
T Consensus        75 ~d~~i~   80 (304)
T 2ynn_A           75 DDFRIR   80 (304)
T ss_dssp             TTSEEE
T ss_pred             CCCEEE
Confidence            999885

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.95  E-value=6.2e-05  Score=52.82  Aligned_cols=70  Identities=13%  Similarity=0.259  Sum_probs=54.9

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|     ...++|+.+.+ .|.|+++...   +.++.+.  .+...+++++|+.+    ..+|++||.
T Consensus        73 ~~h~~~V~~~~~~~-----~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~--~h~~~v~~v~~sp~----~~~l~s~~~  138 (343)
T 2xzm_R           73 TGHNHFVSDLALSQ-----ENCFAISSSWDKTLRLWDLRTG---TTYKRFV--GHQSEVYSVAFSPD----NRQILSAGA  138 (343)
T ss_dssp             CCCSSCEEEEEECS-----STTEEEEEETTSEEEEEETTSS---CEEEEEE--CCCSCEEEEEECSS----TTEEEEEET
T ss_pred             ccCCCceEEEEECC-----CCCEEEEEcCCCcEEEEECCCC---cEEEEEc--CCCCcEEEEEECCC----CCEEEEEcC
Confidence            56888999999987     24678888866 6999999876   4455554  46788999999987    245899999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.||
T Consensus       139 d~~i~  143 (343)
T 2xzm_R          139 EREIK  143 (343)
T ss_dssp             TSCEE
T ss_pred             CCEEE
Confidence            99875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.94  E-value=6.9e-05  Score=51.24  Aligned_cols=71  Identities=11%  Similarity=0.184  Sum_probs=55.2

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ...|..++.+++|+|-     .+.+|+.+.+ .|.||++...   +.++.+.  .+...+.+++|+.+    ..+|++++
T Consensus        28 l~~h~~~v~~~~~s~~-----~~~l~~~~~dg~i~vwd~~~~---~~~~~~~--~h~~~v~~~~~~~~----~~~l~s~~   93 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKE-----GDLLFSCSKDSSASVWYSLNG---ERLGTLD--GHTGTIWSIDVDCF----TKYCVTGS   93 (369)
T ss_dssp             EECCSSCEEEEEECTT-----SCEEEEEESSSCEEEEETTTC---CEEEEEC--CCSSCEEEEEECTT----SSEEEEEE
T ss_pred             EEEeeceEEEEEEcCC-----CCEEEEEeCCCEEEEEeCCCc---hhhhhhh--hcCCcEEEEEEcCC----CCEEEEEe
Confidence            3679999999999982     4567777755 6999998876   4555553  46788999999976    35699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus        94 ~dg~i~   99 (369)
T 3zwl_B           94 ADYSIK   99 (369)
T ss_dssp             TTTEEE
T ss_pred             CCCeEE
Confidence            999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.93  E-value=0.00014  Score=50.77  Aligned_cols=74  Identities=12%  Similarity=0.167  Sum_probs=55.6

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcC----CC---------------CCceeEEE
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADP----DI---------------EENFYTCA   66 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~----d~---------------~e~~y~~a   66 (88)
                      |..++.+++|+|-     .+.+|+.+.+ .|.||++...   +.++.+...    .+               ...+.+++
T Consensus       290 ~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~  361 (397)
T 1sq9_A          290 HSSWVMSLSFNDS-----GETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVK  361 (397)
T ss_dssp             BSSCEEEEEECSS-----SSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEE
T ss_pred             cCCcEEEEEECCC-----CCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhccccccccccCCceeEEE
Confidence            8889999999983     4567777755 6999999876   566666511    23               78899999


Q ss_pred             EeecCC------CCceEEEEecCCcEeC
Q psy8253          67 WSMDLE------SGRPLLAVAGSRAVIR   88 (88)
Q Consensus        67 Ws~d~~------~~~plLa~aG~~G~Ir   88 (88)
                      |+.+..      ....+|++||.+|.|+
T Consensus       362 ~~~~g~~~~~~~~~~~~l~s~~~dg~i~  389 (397)
T 1sq9_A          362 FLKKGWRSGMGADLNESLCCVCLDRSIR  389 (397)
T ss_dssp             EECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred             eccccccccccccccceEEEecCCCcEE
Confidence            998720      1126899999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.92  E-value=9e-05  Score=51.72  Aligned_cols=71  Identities=6%  Similarity=0.162  Sum_probs=56.7

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++.+++|+|     ..+.+|+++.+ .|.|+++...   +.++.+.  .+...+.+++|+.+    ..+|++|+
T Consensus        61 ~~~h~~~v~~~~~s~-----dg~~l~s~s~D~~v~~wd~~~~---~~~~~~~--~h~~~v~~~~~~~~----~~~l~s~s  126 (319)
T 3frx_A           61 FKGHSHIVQDCTLTA-----DGAYALSASWDKTLRLWDVATG---ETYQRFV--GHKSDVMSVDIDKK----ASMIISGS  126 (319)
T ss_dssp             EECCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTT---EEEEEEE--CCSSCEEEEEECTT----SCEEEEEE
T ss_pred             EeCCcccEEEEEECC-----CCCEEEEEeCCCEEEEEECCCC---CeeEEEc--cCCCcEEEEEEcCC----CCEEEEEe
Confidence            357889999999987     35678888876 6999999876   5666664  46788999999876    35699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.||
T Consensus       127 ~D~~i~  132 (319)
T 3frx_A          127 RDKTIK  132 (319)
T ss_dssp             TTSCEE
T ss_pred             CCCeEE
Confidence            999875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.92  E-value=0.00013  Score=49.88  Aligned_cols=72  Identities=8%  Similarity=0.180  Sum_probs=54.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ...|..++.+++|+|     ..+.+|+++.+ .|.|+++...   ++++..   .+...+.+++|...+  ...+|++|+
T Consensus        82 ~~~h~~~v~~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~---~~~~~~---~~~~~v~~~~~~~~~--~~~~l~~~~  148 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSD-----DGSKVFTASCDKTAKMWDLSSN---QAIQIA---QHDAPVKTIHWIKAP--NYSCVMTGS  148 (368)
T ss_dssp             EEECSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTT---EEEEEE---ECSSCEEEEEEEECS--SCEEEEEEE
T ss_pred             eccccCCEEEEEECc-----CCCEEEEEcCCCcEEEEEcCCC---Cceeec---cccCceEEEEEEeCC--CCCEEEEcc
Confidence            356889999999998     34567777765 6999999876   444444   367889999996542  246799999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       149 ~dg~i~  154 (368)
T 3mmy_A          149 WDKTLK  154 (368)
T ss_dssp             TTSEEE
T ss_pred             CCCcEE
Confidence            999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.91  E-value=8.4e-05  Score=51.24  Aligned_cols=74  Identities=14%  Similarity=0.135  Sum_probs=56.6

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      ++.-|..++.+++|+|-     .+.+|+.+ .+.|.||+.... ..+.++.+.  .+...+.+++|+.+    ..+|++|
T Consensus         3 ~~~~~~~~i~~~~~s~~-----~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~--~h~~~v~~~~~~~~----~~~l~~~   70 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKD-----RTQIAICPNNHEVHIYEKSGN-KWVQVHELK--EHNGQVTGVDWAPD----SNRIVTC   70 (372)
T ss_dssp             EEESCSSCCCEEEECTT-----SSEEEEECSSSEEEEEEEETT-EEEEEEEEE--CCSSCEEEEEEETT----TTEEEEE
T ss_pred             eecccCCCeEEEEECCC-----CCEEEEEeCCCEEEEEeCCCC-cEEeeeeec--CCCCcccEEEEeCC----CCEEEEE
Confidence            45568899999999983     45788875 457999998775 234666665  46788999999976    3569999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      +.+|.|+
T Consensus        71 ~~dg~i~   77 (372)
T 1k8k_C           71 GTDRNAY   77 (372)
T ss_dssp             ETTSCEE
T ss_pred             cCCCeEE
Confidence            9999874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.91  E-value=0.0001  Score=51.98  Aligned_cols=71  Identities=13%  Similarity=0.116  Sum_probs=55.0

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ...|..++.+++|+|-     .+.+|+.+.+ .|.||++.....+   +.+.  .+...+.+++|+.+    ..+|++|+
T Consensus       135 ~~~h~~~v~~~~~~~~-----~~~l~s~s~d~~i~iwd~~~~~~~---~~~~--~h~~~v~~~~~~~~----~~~l~s~~  200 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPS-----GEALISSSQDMQLKIWSVKDGSNP---RTLI--GHRATVTDIAIIDR----GRNVLSAS  200 (420)
T ss_dssp             TTSSSSCEEEEEECTT-----SSEEEEEETTSEEEEEETTTCCCC---EEEE--CCSSCEEEEEEETT----TTEEEEEE
T ss_pred             cccccCccEEEEECCC-----CCEEEEEeCCCeEEEEeCCCCcCc---eEEc--CCCCcEEEEEEcCC----CCEEEEEc
Confidence            3578999999999982     4578888776 6999999876443   3333  46788999999976    34689999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       201 ~d~~v~  206 (420)
T 3vl1_A          201 LDGTIR  206 (420)
T ss_dssp             TTSCEE
T ss_pred             CCCcEE
Confidence            999874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.91  E-value=6.6e-05  Score=52.41  Aligned_cols=75  Identities=11%  Similarity=0.124  Sum_probs=58.1

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC--eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS--IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~--~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      .+.|..++.+++|+|-    ..+++|+.|.+ .|.++++..+..  -..++.+.  .+...+.+|+|+.+    ..+|++
T Consensus        13 l~gH~~~V~~l~~~~~----~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~d----g~~l~s   82 (319)
T 3frx_A           13 LEGHNGWVTSLATSAG----QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--GHSHIVQDCTLTAD----GAYALS   82 (319)
T ss_dssp             ECCCSSCEEEEEECSS----CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE--CCSSCEEEEEECTT----SSEEEE
T ss_pred             EccccceEEEEEccCC----CccEEEEecCCccEEEecCCCCCccccccceEEe--CCcccEEEEEECCC----CCEEEE
Confidence            3689999999999873    35789999887 599999875432  13455554  47889999999977    356999


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      ||.||.||
T Consensus        83 ~s~D~~v~   90 (319)
T 3frx_A           83 ASWDKTLR   90 (319)
T ss_dssp             EETTSEEE
T ss_pred             EeCCCEEE
Confidence            99999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=97.90  E-value=0.00014  Score=51.01  Aligned_cols=79  Identities=10%  Similarity=0.038  Sum_probs=58.8

Q ss_pred             cccCCCCeEEEEEecCCCC-CCCCEEEEeCCC-eEEEEEcCCCCC----eeEEEEEEcCCCCCceeEEEEeecCCCCceE
Q psy8253           4 KEDHGQPLFGAQFNHLLKD-DQPRIFATVGSN-RVSIYECPDGGS----IKLLQCYADPDIEENFYTCAWSMDLESGRPL   77 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~-~~~~~fAtvG~~-~v~Vy~~~~~~~----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~pl   77 (88)
                      .+.|..+|++++|.+.... ...+++|+.|.+ .|.|+++.....    -..++.+  ..+...+.+++|+.+    ..+
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~~~~----~~~   90 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL--TGHNHFVSDLALSQE----NCF   90 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE--CCCSSCEEEEEECSS----TTE
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh--ccCCCceEEEEECCC----CCE
Confidence            4679999999999664432 257899999987 599999976432    1233333  257888999999976    457


Q ss_pred             EEEecCCcEeC
Q psy8253          78 LAVAGSRAVIR   88 (88)
Q Consensus        78 La~aG~~G~Ir   88 (88)
                      |++|+.||.||
T Consensus        91 l~s~s~D~~v~  101 (343)
T 2xzm_R           91 AISSSWDKTLR  101 (343)
T ss_dssp             EEEEETTSEEE
T ss_pred             EEEEcCCCcEE
Confidence            99999999885

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.90  E-value=3.1e-05  Score=55.35  Aligned_cols=74  Identities=12%  Similarity=0.091  Sum_probs=56.7

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCC---CCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPD---GGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~---~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      .+.|..+|.+++|+|..    .+.+|+.|.+ .|.|+++..   ....+....+   .+...+.+++|+.+    ..+|+
T Consensus        59 ~~~h~~~V~~~~~s~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~----~~~l~  127 (437)
T 3gre_A           59 MENEPNSITSSAVSPGE----TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY---DCSSTVTQITMIPN----FDAFA  127 (437)
T ss_dssp             CTTTTSCEEEEEEECSS----SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE---ECSSCEEEEEECTT----SSEEE
T ss_pred             ccCCCCceEEEEECCCC----CCEEEEecCCceEEEeECcccccCcccceeeec---cCCCCEEEEEEeCC----CCEEE
Confidence            46788999999999842    4678998876 599999876   3323334455   36788999999965    35699


Q ss_pred             EecCCcEeC
Q psy8253          80 VAGSRAVIR   88 (88)
Q Consensus        80 ~aG~~G~Ir   88 (88)
                      +|+.+|.|+
T Consensus       128 s~s~dg~i~  136 (437)
T 3gre_A          128 VSSKDGQII  136 (437)
T ss_dssp             EEETTSEEE
T ss_pred             EEeCCCEEE
Confidence            999999885

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.90  E-value=5.5e-05  Score=52.06  Aligned_cols=78  Identities=13%  Similarity=0.234  Sum_probs=58.6

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|...  ...++|+++.+ .|.||++...........+........+.+++|+.+    ..+|++++.
T Consensus       203 ~~h~~~v~~~~~sp~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~  276 (379)
T 3jrp_A          203 EGHSDWVRDVAWSPTVL--LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS----GNVLALSGG  276 (379)
T ss_dssp             CCCSSCEEEEEECCCCS--SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS----SCCEEEEES
T ss_pred             ecccCcEeEEEECCCCC--CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC----CCEEEEecC
Confidence            45888999999998531  25678888866 699999988654334444544457888999999987    346999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       277 dg~i~  281 (379)
T 3jrp_A          277 DNKVT  281 (379)
T ss_dssp             SSSEE
T ss_pred             CCcEE
Confidence            99874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.89  E-value=0.00019  Score=48.19  Aligned_cols=79  Identities=16%  Similarity=0.204  Sum_probs=61.6

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      .|...+++++|+|-..  ....+|+.+.+...++.....+.+..+..+.  .+...+.+++|+.+......+|++|+.+|
T Consensus       165 ~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRF--SPEKLAVSALEQAIIYQRGKDGKLHVAAKLP--GHKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             SCSCCCEEEEECCCSS--SCCEEEEEETTEEEEEEECTTSCEEEEEECC--CCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             CcccceeEEEeccCCC--CCcEEEEecCCCcEEEEccCCCceeeeeecC--CCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence            5778999999999632  4678999999988888888877666666653  47888999999988322237899999999


Q ss_pred             EeC
Q psy8253          86 VIR   88 (88)
Q Consensus        86 ~Ir   88 (88)
                      .||
T Consensus       241 ~i~  243 (351)
T 3f3f_A          241 RIR  243 (351)
T ss_dssp             CEE
T ss_pred             eEE
Confidence            885

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.89  E-value=0.00012  Score=51.36  Aligned_cols=71  Identities=11%  Similarity=0.262  Sum_probs=54.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..+|++++|+|     ..+.+|+.|.+ .|.|++....   +.++.+.  .+...+++|+|+.+    ..+|++||
T Consensus        51 l~gH~~~v~~~~~s~-----d~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~--~~~~~v~~~~~s~~----~~~l~s~~  116 (340)
T 1got_B           51 LRGHLAKIYAMHWGT-----DSRLLLSASQDGKLIIWDSYTT---NKVHAIP--LRSSWVMTCAYAPS----GNYVACGG  116 (340)
T ss_dssp             ECCCSSCEEEEEECT-----TSSEEEEEETTTEEEEEETTTC---CEEEEEE--CSSSCEEEEEECTT----SSEEEEEE
T ss_pred             ecCCCCceEEEEECC-----CCCEEEEEeCCCcEEEEECCCC---CcceEee--cCCccEEEEEECCC----CCEEEEEe
Confidence            356899999999987     35678888877 6999998876   3344443  35677999999986    35699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       117 ~d~~v~  122 (340)
T 1got_B          117 LDNICS  122 (340)
T ss_dssp             TTCEEE
T ss_pred             CCCeEE
Confidence            999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.89  E-value=8.9e-05  Score=53.76  Aligned_cols=75  Identities=11%  Similarity=0.189  Sum_probs=57.4

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|..    ..+||+++.+ .|.||++......+.+..+.  .+...+.+++|+.+   +..+|++|+.
T Consensus       228 ~~h~~~v~~v~~~p~~----~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~v~~i~~~p~---~~~~l~tg~~  298 (430)
T 2xyi_A          228 TGHTAVVEDVAWHLLH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD--AHTAEVNCLSFNPY---SEFILATGSA  298 (430)
T ss_dssp             CCCSSCEEEEEECSSC----TTEEEEEETTSEEEEEETTCSCSSSCSEEEE--CCSSCEEEEEECSS---CTTEEEEEET
T ss_pred             cCCCCCEeeeEEeCCC----CCEEEEEeCCCeEEEEECCCCCCCcceeEee--cCCCCeEEEEeCCC---CCCEEEEEeC
Confidence            4688899999999843    5789888755 79999998764334444443  36778999999976   4568999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       299 dg~v~  303 (430)
T 2xyi_A          299 DKTVA  303 (430)
T ss_dssp             TSEEE
T ss_pred             CCeEE
Confidence            99885

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.86  E-value=0.00011  Score=52.30  Aligned_cols=73  Identities=14%  Similarity=0.301  Sum_probs=57.2

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|..    ..++|+.+.+ .|.|+++...   +.++.+....+...+.+++|+.+    ..+|++|+.
T Consensus       128 ~~h~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~  196 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTA----QNVLLSAGCDNVILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSRD----GALICTSCR  196 (402)
T ss_dssp             ECCSSCEEEEEECSSB----TTEEEEEETTSCEEEEETTTT---EEEEEECTTTCCSCEEEEEECTT----SSCEEEEET
T ss_pred             cCCCCeEEEEEECcCC----CCEEEEEcCCCEEEEEECCCC---CccEEEecCCCCCceEEEEECCC----CCEEEEEec
Confidence            4688999999999843    4578888766 6999999876   56666642357889999999976    346999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       197 d~~i~  201 (402)
T 2aq5_A          197 DKRVR  201 (402)
T ss_dssp             TSEEE
T ss_pred             CCcEE
Confidence            99885

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.85  E-value=7.9e-05  Score=53.42  Aligned_cols=71  Identities=23%  Similarity=0.358  Sum_probs=51.6

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcC----------------CCCCceeEEEEee
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADP----------------DIEENFYTCAWSM   69 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~----------------d~~e~~y~~aWs~   69 (88)
                      +|..++.+++|+|     +.+.+|+.+.+.+.||+.....   .+..+.+.                ..+..+.+++|+.
T Consensus        62 ~h~~~V~~v~fsp-----dg~~la~g~~~~v~i~~~~~g~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~  133 (393)
T 1erj_A           62 DHTSVVCCVKFSN-----DGEYLATGCNKTTQVYRVSDGS---LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  133 (393)
T ss_dssp             ECSSCCCEEEECT-----TSSEEEEECBSCEEEEETTTCC---EEEEECC-----------------CCCCBEEEEEECT
T ss_pred             CCCCEEEEEEECC-----CCCEEEEEcCCcEEEEEecCCC---EEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence            5889999999998     2467888777889999998763   33333221                1122478999997


Q ss_pred             cCCCCceEEEEecCCcEeC
Q psy8253          70 DLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        70 d~~~~~plLa~aG~~G~Ir   88 (88)
                      |    ..+||+|+.+|.||
T Consensus       134 d----g~~l~s~~~d~~i~  148 (393)
T 1erj_A          134 D----GKFLATGAEDRLIR  148 (393)
T ss_dssp             T----SSEEEEEETTSCEE
T ss_pred             C----CCEEEEEcCCCeEE
Confidence            6    34699999999885

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.85  E-value=0.00014  Score=50.30  Aligned_cols=75  Identities=17%  Similarity=0.174  Sum_probs=55.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++.+++|+|..    ..+||+.+.+ .|.|+++....+...+.    ...+..+..++|+..+  ..++|++|+
T Consensus       136 ~~~h~~~v~~v~~~p~~----~~~l~sgs~D~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~--~~~~l~s~s  205 (304)
T 2ynn_A          136 FEGHEHFVMCVAFNPKD----PSTFASGCLDRTVKVWSLGQSTPNFTLT----TGQERGVNYVDYYPLP--DKPYMITAS  205 (304)
T ss_dssp             ECCCCSCEEEEEECTTC----TTEEEEEETTSEEEEEETTCSSCSEEEE----CCCTTCEEEEEECCST--TCCEEEEEE
T ss_pred             hcccCCcEEEEEECCCC----CCEEEEEeCCCeEEEEECCCCCccceec----cCCcCcEEEEEEEEcC--CCCEEEEEc
Confidence            46788999999999853    5678888876 59999997754433222    1355678889998763  357899999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.||
T Consensus       206 ~D~~i~  211 (304)
T 2ynn_A          206 DDLTIK  211 (304)
T ss_dssp             TTSEEE
T ss_pred             CCCeEE
Confidence            999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.85  E-value=6.2e-05  Score=51.51  Aligned_cols=79  Identities=8%  Similarity=0.130  Sum_probs=57.8

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|...  ....+++.+ .+.|.||++.....+..+.......+...+++++|+.+   +..+|++|+.
T Consensus       206 ~~~~~~v~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~  280 (357)
T 3i2n_A          206 TNIKNGVCSLEFDRKDI--SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ---NRELFLTAGG  280 (357)
T ss_dssp             EECSSCEEEEEESCSSS--SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT---EEEEEEEEET
T ss_pred             cCCCCceEEEEcCCCCC--CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC---CCcEEEEEeC
Confidence            46788999999999642  244566665 45799999987655444443333457889999999976   3448999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       281 dg~i~  285 (357)
T 3i2n_A          281 AGGLH  285 (357)
T ss_dssp             TSEEE
T ss_pred             CCcEE
Confidence            99885

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.84  E-value=4.9e-05  Score=54.29  Aligned_cols=71  Identities=8%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..+|++++|+|-     .+.+|+.+.+ .|.|++....   +.++.+.  .+...+.+|+|+.+    ..+||+||
T Consensus        62 l~gH~~~V~~~~~sp~-----~~~l~s~s~D~~v~iWd~~~~---~~~~~~~--~h~~~v~~~~~s~~----g~~las~~  127 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPE-----KNWIVSASQDGRLIVWNALTS---QKTHAIK--LHCPWVMECAFAPN----GQSVACGG  127 (380)
T ss_dssp             ECCCSSCEEEEEECTT-----SSCEEEEETTSEEEEEETTTT---EEEEEEE--CCCTTCCCCEECTT----SSEEEECC
T ss_pred             ccccccEEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCC---ccceEEe--cCCCCEEEEEECCC----CCEEEEee
Confidence            4679999999999983     4568888877 6999998876   4444443  35677999999976    35699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       128 ~d~~v~  133 (380)
T 3iz6_a          128 LDSACS  133 (380)
T ss_dssp             SSSCCE
T ss_pred             CCCcEE
Confidence            998764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.84  E-value=0.00012  Score=51.90  Aligned_cols=73  Identities=16%  Similarity=0.312  Sum_probs=54.4

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC--------CeeEEEEEEcCCCC------------CceeEE
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG--------SIKLLQCYADPDIE------------ENFYTC   65 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~--------~~~~l~~~~d~d~~------------e~~y~~   65 (88)
                      +..+|.+++|+|     ..+.+|+.+.+ .|.||++....        ..++++.+..  +.            +.+.++
T Consensus        27 ~~~~V~~v~~s~-----~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--h~~~~~~~~~~~~~~~V~~l   99 (447)
T 3dw8_B           27 EADIISTVEFNH-----SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS--HEPEFDYLKSLEIEEKINKI   99 (447)
T ss_dssp             GGGSEEEEEECS-----SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC--CCCEEEGGGTEEECCCCCEE
T ss_pred             ccCcEEEEEECC-----CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc--ccccccccccccccCceEEE
Confidence            457999999998     35678888765 69999998643        2446666653  33            789999


Q ss_pred             EEeecCCCCceEEEEecCCcEeC
Q psy8253          66 AWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        66 aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      +|+.+  ....+|++|+.+|.||
T Consensus       100 ~~~~~--~~~~~l~s~s~d~~i~  120 (447)
T 3dw8_B          100 RWLPQ--KNAAQFLLSTNDKTIK  120 (447)
T ss_dssp             EECCC--CSSSEEEEEECSSCEE
T ss_pred             EEcCC--CCcceEEEeCCCCeEE
Confidence            99987  3336799999999885

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.83  E-value=9.4e-05  Score=51.79  Aligned_cols=72  Identities=10%  Similarity=0.119  Sum_probs=52.7

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .|..++.+++|+|..   ..+.||+++.+ .|.||++....   .++.+.. .....+.+++|+.+    ..+||+|+.+
T Consensus       123 ~~~~~v~~~~~~~~~---~~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~-~~~~~i~~~~~~pd----g~~lasg~~d  191 (343)
T 3lrv_A          123 DSANEIIYMYGHNEV---NTEYFIWADNRGTIGFQSYEDDS---QYIVHSA-KSDVEYSSGVLHKD----SLLLALYSPD  191 (343)
T ss_dssp             CCSSCEEEEECCC------CCEEEEEETTCCEEEEESSSSC---EEEEECC-CSSCCCCEEEECTT----SCEEEEECTT
T ss_pred             CCCCCEEEEEcCCCC---CCCEEEEEeCCCcEEEEECCCCc---EEEEEec-CCCCceEEEEECCC----CCEEEEEcCC
Confidence            455789999999954   35678888866 69999998763   3443322 34556999999986    4679999999


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.||
T Consensus       192 g~i~  195 (343)
T 3lrv_A          192 GILD  195 (343)
T ss_dssp             SCEE
T ss_pred             CEEE
Confidence            9885

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.83  E-value=0.00016  Score=49.51  Aligned_cols=71  Identities=11%  Similarity=0.296  Sum_probs=54.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++.+++|+|-     .+.+|+.+.+ .|.||++...   +.++.+.  .+...+.+++|+.+    ..+|++|+
T Consensus        61 ~~~h~~~v~~~~~~~~-----~~~l~s~~~d~~i~vwd~~~~---~~~~~~~--~~~~~v~~~~~~~~----~~~l~s~~  126 (312)
T 4ery_A           61 ISGHKLGISDVAWSSD-----SNLLVSASDDKTLKIWDVSSG---KCLKTLK--GHSNYVFCCNFNPQ----SNLIVSGS  126 (312)
T ss_dssp             ECCCSSCEEEEEECTT-----SSEEEEEETTSEEEEEETTTC---CEEEEEE--CCSSCEEEEEECSS----SSEEEEEE
T ss_pred             hccCCCceEEEEEcCC-----CCEEEEECCCCEEEEEECCCC---cEEEEEc--CCCCCEEEEEEcCC----CCEEEEEe
Confidence            3568889999999982     4678888776 6999999876   4444443  36778999999976    35699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       127 ~d~~i~  132 (312)
T 4ery_A          127 FDESVR  132 (312)
T ss_dssp             TTSCEE
T ss_pred             CCCcEE
Confidence            999875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.82  E-value=6.3e-05  Score=55.73  Aligned_cols=71  Identities=15%  Similarity=0.295  Sum_probs=54.1

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|+.++.+++|+|..    ..+||+++.+ .|.|+++...   ..+....  .+...+++++|+.+   |+ +|++|+.
T Consensus       146 ~~h~~~V~~v~~~p~~----~~~las~s~Dg~v~iwD~~~~---~~~~~~~--~~~~~v~~v~wspd---g~-~lasgs~  212 (434)
T 2oit_A          146 KDAGGMVIDMKWNPTV----PSMVAVCLADGSIAVLQVTET---VKVCATL--PSTVAVTSVCWSPK---GK-QLAVGKQ  212 (434)
T ss_dssp             CSGGGSEEEEEECSSC----TTEEEEEETTSCEEEEEESSS---EEEEEEE--CGGGCEEEEEECTT---SS-CEEEEET
T ss_pred             CCCCCceEEEEECCCC----CCEEEEEECCCeEEEEEcCCC---cceeecc--CCCCceeEEEEcCC---CC-EEEEEcC
Confidence            3478899999999953    5789988877 5999999875   2333332  35778999999987   34 4999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       213 dg~v~  217 (434)
T 2oit_A          213 NGTVV  217 (434)
T ss_dssp             TSCEE
T ss_pred             CCcEE
Confidence            99874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.82  E-value=5.4e-05  Score=54.90  Aligned_cols=73  Identities=4%  Similarity=-0.001  Sum_probs=54.0

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .|...|.+++|+|..    +.++|+-+.+ .|.|+++.......+++.   ..+...+.+++|+..  ++ .+|++||.|
T Consensus       117 ~~~~~V~~l~~~P~~----~~~lasGs~dg~i~lWd~~~~~~~~~~~~---~gH~~~V~~l~f~p~--~~-~~l~s~s~D  186 (435)
T 4e54_B          117 PFDRRATSLAWHPTH----PSTVAVGSKGGDIMLWNFGIKDKPTFIKG---IGAGGSITGLKFNPL--NT-NQFYASSME  186 (435)
T ss_dssp             ECSSCEEEEEECSSC----TTCEEEEETTSCEEEECSSCCSCCEEECC---CSSSCCCCEEEECSS--CT-TEEEEECSS
T ss_pred             CCCCCEEEEEEeCCC----CCEEEEEeCCCEEEEEECCCCCceeEEEc---cCCCCCEEEEEEeCC--CC-CEEEEEeCC
Confidence            466779999999854    4578887765 699999887644333332   257889999999964  33 359999999


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.||
T Consensus       187 ~~v~  190 (435)
T 4e54_B          187 GTTR  190 (435)
T ss_dssp             SCEE
T ss_pred             CEEE
Confidence            9885

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.81  E-value=0.00017  Score=49.69  Aligned_cols=72  Identities=14%  Similarity=0.245  Sum_probs=54.8

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|     ..+.+|+.+.+ .|.||++...   +..+.+.-..+...+.+++|+.+    ..+|++|+.
T Consensus        49 ~~h~~~v~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~  116 (372)
T 1k8k_C           49 KEHNGQVTGVDWAP-----DSNRIVTCGTDRNAYVWTLKGR---TWKPTLVILRINRAARCVRWAPN----EKKFAVGSG  116 (372)
T ss_dssp             ECCSSCEEEEEEET-----TTTEEEEEETTSCEEEEEEETT---EEEEEEECCCCSSCEEEEEECTT----SSEEEEEET
T ss_pred             cCCCCcccEEEEeC-----CCCEEEEEcCCCeEEEEECCCC---eeeeeEEeecCCCceeEEEECCC----CCEEEEEeC
Confidence            46888999999998     24567777765 6999999765   44444444467888999999976    356999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       117 d~~v~  121 (372)
T 1k8k_C          117 SRVIS  121 (372)
T ss_dssp             TSSEE
T ss_pred             CCEEE
Confidence            98774

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.81  E-value=8.4e-05  Score=52.74  Aligned_cols=75  Identities=9%  Similarity=0.164  Sum_probs=55.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEE-----EcCCCCCceeEEEEeecCCCCceEE
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCY-----ADPDIEENFYTCAWSMDLESGRPLL   78 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~-----~d~d~~e~~y~~aWs~d~~~~~plL   78 (88)
                      ...|..++.+++|+|     ..+.+|+...+.|.|+++...+  +.++.+     ....+...+.+++|+.+   +..+|
T Consensus       173 ~~~h~~~v~~~~~~~-----~~~~l~s~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l  242 (447)
T 3dw8_B          173 ANAHTYHINSISINS-----DYETYLSADDLRINLWHLEITD--RSFNIVDIKPANMEELTEVITAAEFHPN---SCNTF  242 (447)
T ss_dssp             CSCCSSCCCEEEECT-----TSSEEEEECSSEEEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEECSS---CTTEE
T ss_pred             ccCCCcceEEEEEcC-----CCCEEEEeCCCeEEEEECCCCC--ceeeeeecccccccccCcceEEEEECCC---CCcEE
Confidence            367999999999998     2567888777789999998532  333322     12356788999999977   33579


Q ss_pred             EEecCCcEeC
Q psy8253          79 AVAGSRAVIR   88 (88)
Q Consensus        79 a~aG~~G~Ir   88 (88)
                      ++|+.+|.||
T Consensus       243 ~s~~~dg~i~  252 (447)
T 3dw8_B          243 VYSSSKGTIR  252 (447)
T ss_dssp             EEEETTSCEE
T ss_pred             EEEeCCCeEE
Confidence            9999999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.80  E-value=0.00018  Score=48.55  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=51.4

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeC--CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVG--SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG--~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ..+..++..+.|.|..    ..++++.|  .+.|.|+++...   +.++.+.  .+...+.+++|+.|    ..+||+||
T Consensus       237 ~~~~~~v~~~~~~~~~----~~~~~~sg~~d~~i~iwd~~~~---~~~~~l~--gH~~~V~~l~~spd----g~~l~S~s  303 (318)
T 4ggc_A          237 VDAHSQVCSILWSPHY----KELISGHGFAQNQLVIWKYPTM---AKVAELK--GHTSRVLSLTMSPD----GATVASAA  303 (318)
T ss_dssp             EECSSCEEEEEEETTT----TEEEEEECTTTCCEEEEETTTC---CEEEEEC--CCSSCEEEEEECTT----SSCEEEEE
T ss_pred             ccceeeeeeeeecccc----cceEEEEEcCCCEEEEEECCCC---cEEEEEc--CCCCCEEEEEEcCC----CCEEEEEe
Confidence            3456677888888744    33444443  357999999876   5556553  47888999999987    34699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .||.||
T Consensus       304 ~D~~v~  309 (318)
T 4ggc_A          304 ADETLR  309 (318)
T ss_dssp             TTTEEE
T ss_pred             cCCeEE
Confidence            999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.00011  Score=51.45  Aligned_cols=71  Identities=13%  Similarity=0.258  Sum_probs=55.3

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .|..++.+++|+|.    ..+++|+.+.+ .|.||++...   +.++.+.  .+...+.+++|+.+   +..+|++++.+
T Consensus       260 ~~~~~v~~~~~s~~----~~~~l~s~~~dg~v~~wd~~~~---~~~~~~~--~~~~~v~~~~~s~~---~~~~l~s~~~d  327 (416)
T 2pm9_A          260 GHQKGILSLDWCHQ----DEHLLLSSGRDNTVLLWNPESA---EQLSQFP--ARGNWCFKTKFAPE---APDLFACASFD  327 (416)
T ss_dssp             CCSSCEEEEEECSS----CSSCEEEEESSSEEEEECSSSC---CEEEEEE--CSSSCCCCEEECTT---CTTEEEECCSS
T ss_pred             CccCceeEEEeCCC----CCCeEEEEeCCCCEEEeeCCCC---ccceeec--CCCCceEEEEECCC---CCCEEEEEecC
Confidence            68889999999984    34667887765 7999998876   4555554  35678999999987   33579999999


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.|+
T Consensus       328 ~~i~  331 (416)
T 2pm9_A          328 NKIE  331 (416)
T ss_dssp             SEEE
T ss_pred             CcEE
Confidence            9885

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.78  E-value=0.00021  Score=48.85  Aligned_cols=74  Identities=12%  Similarity=0.165  Sum_probs=56.5

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .|...+++++|+|-... ..+++|+.+.+ .|.||++...   +.++.+.  .+...+.+++|+.+  + ..+|++|+.+
T Consensus        67 ~~~~~v~~~~~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~--~~~~~i~~~~~~~~--~-~~~l~s~~~d  137 (366)
T 3k26_A           67 DADENFYTCAWTYDSNT-SHPLLAVAGSRGIIRIINPITM---QCIKHYV--GHGNAINELKFHPR--D-PNLLLSVSKD  137 (366)
T ss_dssp             CTTCCEEEEEEEECTTT-CCEEEEEEETTCEEEEECTTTC---CEEEEEE--SCCSCEEEEEECSS--C-TTEEEEEETT
T ss_pred             CCCCcEEEEEeccCCCC-CCCEEEEecCCCEEEEEEchhc---eEeeeec--CCCCcEEEEEECCC--C-CCEEEEEeCC
Confidence            36788999999997643 35678887776 6999998875   4555554  46788999999973  2 3469999999


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.|+
T Consensus       138 g~i~  141 (366)
T 3k26_A          138 HALR  141 (366)
T ss_dssp             SCEE
T ss_pred             CeEE
Confidence            9875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.78  E-value=0.00015  Score=50.58  Aligned_cols=70  Identities=10%  Similarity=0.075  Sum_probs=53.9

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCC--------------C-eeEEEEEEcCCCCCceeEEEEeec
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGG--------------S-IKLLQCYADPDIEENFYTCAWSMD   70 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~--------------~-~~~l~~~~d~d~~e~~y~~aWs~d   70 (88)
                      |..++.+++|+|-     .+.+|+.+.+ .|.||++...+              + -++++.+   .+...+.+++|+.+
T Consensus       145 h~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~  216 (377)
T 3dwl_C          145 LRSTILSLDWHPN-----NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPS  216 (377)
T ss_dssp             CCSCEEEEEECTT-----SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTT
T ss_pred             cCCCeEEEEEcCC-----CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCC
Confidence            8899999999982     4678888776 59999985321              1 2445555   57888999999987


Q ss_pred             CCCCceEEEEecCCcEeC
Q psy8253          71 LESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        71 ~~~~~plLa~aG~~G~Ir   88 (88)
                          ..+|++|+.+|.|+
T Consensus       217 ----~~~l~~~~~d~~i~  230 (377)
T 3dwl_C          217 ----GNALAYAGHDSSVT  230 (377)
T ss_dssp             ----SSCEEEEETTTEEC
T ss_pred             ----CCEEEEEeCCCcEE
Confidence                34699999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.78  E-value=0.0002  Score=50.77  Aligned_cols=73  Identities=15%  Similarity=0.190  Sum_probs=55.8

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++.+++|+|-     .+.||+++.+ .|.||++..+   +.+..+..........+++|+.+    ..+|++|+
T Consensus       236 ~~~h~~~v~~v~~~p~-----~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~~s~~----g~~l~~g~  303 (354)
T 2pbi_B          236 FETHESDVNSVRYYPS-----GDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASSVDFSLS----GRLLFAGY  303 (354)
T ss_dssp             ECCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECTT----SSEEEEEE
T ss_pred             ecCCCCCeEEEEEeCC-----CCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeEEEEeCC----CCEEEEEE
Confidence            3568889999999983     4679998877 5999999876   44555544444557889999976    35799999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.||
T Consensus       304 ~d~~i~  309 (354)
T 2pbi_B          304 NDYTIN  309 (354)
T ss_dssp             TTSCEE
T ss_pred             CCCcEE
Confidence            999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.76  E-value=0.00018  Score=51.35  Aligned_cols=73  Identities=18%  Similarity=0.189  Sum_probs=54.6

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCC-----CCCceeEEEEeecCCCCceE
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPD-----IEENFYTCAWSMDLESGRPL   77 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d-----~~e~~y~~aWs~d~~~~~pl   77 (88)
                      .+.|..++.+++|+|     ..+.||+.+.+ .|.|+++...   +.++.+....     ....+.+++|+.+    ..+
T Consensus       245 ~~~h~~~v~~v~~~p-----~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~  312 (380)
T 3iz6_a          245 YHGHEGDINSVKFFP-----DGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREPDRNDNELPIVTSVAFSIS----GRL  312 (380)
T ss_dssp             ECCCSSCCCEEEECT-----TSSEEEEECSSSCEEEEETTTT---EEEEEECCCCSSSCCSSCSCSEEEECSS----SSE
T ss_pred             ECCcCCCeEEEEEec-----CCCeEEEEcCCCeEEEEECCCC---cEEEEecccccccccccCceEEEEECCC----CCE
Confidence            356888999999998     35679999887 5999999886   5555554321     1234789999987    356


Q ss_pred             EEEecCCcEeC
Q psy8253          78 LAVAGSRAVIR   88 (88)
Q Consensus        78 La~aG~~G~Ir   88 (88)
                      |++|+.+|.|+
T Consensus       313 l~~g~~dg~i~  323 (380)
T 3iz6_a          313 LFAGYSNGDCY  323 (380)
T ss_dssp             EEEECTTSCEE
T ss_pred             EEEEECCCCEE
Confidence            99999999874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.75  E-value=0.00024  Score=50.43  Aligned_cols=71  Identities=11%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..+|++++|+|     +.+.+|+.|.+ .|.|++..+.   +.++.+.  .+...+.+|+|+.+    ..+||+||
T Consensus        60 l~gH~~~V~~~~~s~-----d~~~l~s~s~Dg~v~vWd~~~~---~~~~~~~--~~~~~v~~~~~sp~----g~~lasg~  125 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCK-----DKRRIVSSSQDGKVIVWDSFTT---NKEHAVT--MPCTWVMACAYAPS----GCAIACGG  125 (354)
T ss_dssp             EECCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTC---CEEEEEE--CSSSCCCEEEECTT----SSEEEEES
T ss_pred             ecCCCCeEEEEEECC-----CCCEEEEEeCCCeEEEEECCCC---CcceEEe--cCCCCEEEEEECCC----CCEEEEee
Confidence            357999999999998     24678998887 5999998776   3334443  25667999999987    34699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       126 ~d~~i~  131 (354)
T 2pbi_B          126 LDNKCS  131 (354)
T ss_dssp             TTSEEE
T ss_pred             CCCCEE
Confidence            999874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.74  E-value=0.00022  Score=54.54  Aligned_cols=71  Identities=14%  Similarity=0.128  Sum_probs=56.5

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++.+++|+|     +.+.+|+.+.+ .|.||+....   +.++.+.  .++..+.+++|+.+    ..+||+||
T Consensus         9 ~~~h~~~v~~i~~sp-----~~~~la~~~~~g~v~iwd~~~~---~~~~~~~--~~~~~v~~~~~s~~----~~~l~~~~   74 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHP-----TEPWVLTTLYSGRVEIWNYETQ---VEVRSIQ--VTETPVRAGKFIAR----KNWIIVGS   74 (814)
T ss_dssp             EEEECSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTT---EEEEEEE--CCSSCEEEEEEEGG----GTEEEEEE
T ss_pred             eecCCCceEEEEECC-----CCCEEEEEeCCCEEEEEECCCC---ceEEEEe--cCCCcEEEEEEeCC----CCEEEEEe
Confidence            467899999999999     24567777755 7999998875   5666664  36778999999987    45799999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus        75 ~dg~i~   80 (814)
T 3mkq_A           75 DDFRIR   80 (814)
T ss_dssp             TTSEEE
T ss_pred             CCCeEE
Confidence            999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.74  E-value=0.0002  Score=50.24  Aligned_cols=74  Identities=7%  Similarity=0.066  Sum_probs=56.4

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++++++|+|..    ++++|+.+.+ .|.||++........   +....+...+.+++|+.+   +..+|++|+.
T Consensus        70 ~~h~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~h~~~v~~~~~~~~---~~~~l~s~~~  139 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTH----PTTVAVGSKGGDIILWDYDVQNKTSF---IQGMGPGDAITGMKFNQF---NTNQLFVSSI  139 (383)
T ss_dssp             CCCSSCEEEEEECSSC----TTEEEEEEBTSCEEEEETTSTTCEEE---ECCCSTTCBEEEEEEETT---EEEEEEEEET
T ss_pred             cCCCCCEEEEEECCCC----CCEEEEEcCCCeEEEEeCCCccccee---eecCCcCCceeEEEeCCC---CCCEEEEEeC
Confidence            5688999999999843    3678888775 699999987643333   332357889999999984   2467999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       140 d~~i~  144 (383)
T 3ei3_B          140 RGATT  144 (383)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            99875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.73  E-value=0.00016  Score=48.80  Aligned_cols=57  Identities=25%  Similarity=0.342  Sum_probs=46.1

Q ss_pred             CCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          25 PRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        25 ~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      +.++|+..++.|.|++....   ++++.+.-..+...+.+++|+.+    ..+||+||.+|.|+
T Consensus        36 ~~~lAvg~D~tV~iWd~~tg---~~~~~~~~~~~~~~V~~v~~~~~----~~~l~sgs~Dg~v~   92 (318)
T 4ggc_A           36 GNVLAVALDNSVYLWSASSG---DILQLLQMEQPGEYISSVAWIKE----GNYLAVGTSSAEVQ   92 (318)
T ss_dssp             TSEEEEEETTEEEEEETTTC---CEEEEEECCSTTCCEEEEEECTT----SSEEEEEETTSEEE
T ss_pred             CCEEEEEeCCEEEEEECCCC---CEEEEEEecCCCCeEEEEEECCC----CCEEEEEECCCcEE
Confidence            45888887889999998876   55666655578888999999987    35699999999885

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.73  E-value=0.00018  Score=54.70  Aligned_cols=71  Identities=17%  Similarity=0.268  Sum_probs=56.1

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|..    ...+|+.|.+ .|.+++..+.   +.++.+.  .+...+++++|+.|    ..+||+||.
T Consensus       144 ~gh~~~v~~v~f~p~~----~~~l~s~s~D~~v~lwd~~~~---~~~~~l~--~H~~~V~~v~fspd----g~~las~s~  210 (611)
T 1nr0_A          144 TGQARAMNSVDFKPSR----PFRIISGSDDNTVAIFEGPPF---KFKSTFG--EHTKFVHSVRYNPD----GSLFASTGG  210 (611)
T ss_dssp             CCCSSCEEEEEECSSS----SCEEEEEETTSCEEEEETTTB---EEEEEEC--CCSSCEEEEEECTT----SSEEEEEET
T ss_pred             cCCCCCceEEEECCCC----CeEEEEEeCCCeEEEEECCCC---eEeeeec--cccCceEEEEECCC----CCEEEEEEC
Confidence            5788999999999843    3468888877 5999997653   5666653  57889999999987    347999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      ||.||
T Consensus       211 D~~i~  215 (611)
T 1nr0_A          211 DGTIV  215 (611)
T ss_dssp             TSCEE
T ss_pred             CCcEE
Confidence            99885

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.72  E-value=7.4e-05  Score=53.25  Aligned_cols=74  Identities=12%  Similarity=0.116  Sum_probs=48.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      ..|...+.+++|+|-     ..+++..+.+.|.|+++.....+.+ ..+....++..+.+++|+.+    ..+|++|+.+
T Consensus        91 ~~~~~~V~~~~~s~d-----~~~l~~s~dg~v~lWd~~~~~~~~~-~~~~~~~h~~~V~~v~~spd----g~~l~sgs~d  160 (357)
T 4g56_B           91 VQTEAGVTDVAWVSE-----KGILVASDSGAVELWEILEKESLLV-NKFAKYEHDDIVKTLSVFSD----GTQAVSGGKD  160 (357)
T ss_dssp             EECSSCEEEEEEETT-----TEEEEEETTSCEEEC--------CC-CCEEECCCSSCEEEEEECSS----SSEEEEEETT
T ss_pred             CCCCCCEEEEEEcCC-----CCEEEEECCCEEEEeeccccceeEE-EeeccCCCCCCEEEEEECCC----CCEEEEEeCC
Confidence            357778999999982     4566666667899999887643222 22222357888999999977    3469999999


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.||
T Consensus       161 g~v~  164 (357)
T 4g56_B          161 FSVK  164 (357)
T ss_dssp             SCEE
T ss_pred             CeEE
Confidence            9875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.71  E-value=0.0002  Score=51.83  Aligned_cols=72  Identities=15%  Similarity=0.224  Sum_probs=52.2

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEc-CCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYAD-PDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d-~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ..|..+|.+++|+|..    ...|+++|.+ .|.|+++...    .++.+.. ......+.+++|+.+    ..+|++|+
T Consensus       161 ~gH~~~V~~l~f~p~~----~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~g~  228 (435)
T 4e54_B          161 IGAGGSITGLKFNPLN----TNQFYASSMEGTTRLQDFKGN----ILRVFASSDTINIWFCSLDVSAS----SRMVVTGD  228 (435)
T ss_dssp             CSSSCCCCEEEECSSC----TTEEEEECSSSCEEEEETTSC----EEEEEECCSSCSCCCCCEEEETT----TTEEEEEC
T ss_pred             cCCCCCEEEEEEeCCC----CCEEEEEeCCCEEEEeeccCC----ceeEEeccCCCCccEEEEEECCC----CCEEEEEe
Confidence            4688999999999854    4678888876 5999998653    2333322 234556788888876    35699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       229 ~dg~i~  234 (435)
T 4e54_B          229 NVGNVI  234 (435)
T ss_dssp             SSSBEE
T ss_pred             CCCcEe
Confidence            999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.71  E-value=0.00016  Score=55.45  Aligned_cols=75  Identities=7%  Similarity=0.018  Sum_probs=57.6

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC-e-eEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS-I-KLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~-~-~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      .+.|...|.+++|+|.    ...++|++|.+ .|.|+++..+.. . ...+.+.  .+...+.+++|+.+    ..+|++
T Consensus       378 l~~H~~~V~~v~~~~~----~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s~~----g~~l~s  447 (694)
T 3dm0_A          378 MRAHTDMVTAIATPID----NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLSSD----GQFALS  447 (694)
T ss_dssp             EECCSSCEEEEECCTT----CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--CCSSCEEEEEECTT----SSEEEE
T ss_pred             cccCCceeEEEEecCC----CCCEEEEEeCCCcEEEEEccCCCcccccccceec--CCCCcEEEEEECCC----CCEEEE
Confidence            3579999999999873    35789999987 699999987543 2 2233332  57888999999976    356999


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      ||.+|.||
T Consensus       448 gs~Dg~v~  455 (694)
T 3dm0_A          448 GSWDGELR  455 (694)
T ss_dssp             EETTSEEE
T ss_pred             EeCCCcEE
Confidence            99999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.70  E-value=0.00028  Score=47.67  Aligned_cols=69  Identities=13%  Similarity=0.248  Sum_probs=52.0

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|-     .+.+++.+.+ .|.||++....   .+...   .+...+.+++|+.+    ..+|++|+.
T Consensus       262 ~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~~~~~~~~---~~~~~---~~~~~v~~~~~s~~----~~~l~~~~~  326 (337)
T 1gxr_A          262 HLHESCVLSLKFAYC-----GKWFVSTGKDNLLNAWRTPYGA---SIFQS---KESSSVLSCDISVD----DKYIVTGSG  326 (337)
T ss_dssp             CCCSSCEEEEEECTT-----SSEEEEEETTSEEEEEETTTCC---EEEEE---ECSSCEEEEEECTT----SCEEEEEET
T ss_pred             cCCccceeEEEECCC-----CCEEEEecCCCcEEEEECCCCe---EEEEe---cCCCcEEEEEECCC----CCEEEEecC
Confidence            567889999999882     4467777655 69999998763   33333   35778999999987    356999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       327 dg~i~  331 (337)
T 1gxr_A          327 DKKAT  331 (337)
T ss_dssp             TSCEE
T ss_pred             CCeEE
Confidence            99874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.70  E-value=4.8e-05  Score=53.10  Aligned_cols=74  Identities=9%  Similarity=0.057  Sum_probs=53.0

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|-     .+.+|+.+.+ .|.||++.......+++.+.. .+...+.+++|+.+    ..+|++|+.
T Consensus        97 ~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~----~~~l~~~~~  166 (377)
T 3dwl_C           97 LRLNRAATFVRWSPN-----EDKFAVGSGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPN----NVLLAAGCA  166 (377)
T ss_dssp             CCCSSCEEEEECCTT-----SSCCEEEESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEECTT----SSEEEEEES
T ss_pred             cccCCceEEEEECCC-----CCEEEEEecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCC----CCEEEEEeC
Confidence            568899999999982     4457777665 699999988755445666643 26788999999976    357999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       167 d~~i~  171 (377)
T 3dwl_C          167 DRKAY  171 (377)
T ss_dssp             SSCEE
T ss_pred             CCEEE
Confidence            99875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.68  E-value=0.00036  Score=48.35  Aligned_cols=79  Identities=11%  Similarity=0.228  Sum_probs=56.7

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEE---EE-----cCCCCCceeEEEEeecCCC
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQC---YA-----DPDIEENFYTCAWSMDLES   73 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~---~~-----d~d~~e~~y~~aWs~d~~~   73 (88)
                      +...|..++.+++|+|.    ..+.+|+.+.+ .|.||++........++.   ..     ...+...+.+++|+.+  +
T Consensus        38 ~~~~h~~~v~~~~~s~~----~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~  111 (408)
T 4a11_B           38 VERIHGGGINTLDIEPV----EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH--D  111 (408)
T ss_dssp             ECCCCSSCEEEEEECTT----TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT--C
T ss_pred             eeeccCCcEEEEEEecC----CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC--C
Confidence            34569999999999984    25678888766 599999988654333321   11     0247889999999975  2


Q ss_pred             CceEEEEecCCcEeC
Q psy8253          74 GRPLLAVAGSRAVIR   88 (88)
Q Consensus        74 ~~plLa~aG~~G~Ir   88 (88)
                       ..+|++++.+|.|+
T Consensus       112 -~~~l~s~~~d~~i~  125 (408)
T 4a11_B          112 -TGMFTSSSFDKTLK  125 (408)
T ss_dssp             -TTCEEEEETTSEEE
T ss_pred             -CcEEEEEeCCCeEE
Confidence             34699999999874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.68  E-value=0.0002  Score=51.76  Aligned_cols=70  Identities=7%  Similarity=0.192  Sum_probs=53.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|-     .+.++++|.+ .|.|+++.....+   +.+.  .+...+.+++|+.+    .++||+||.
T Consensus       335 ~~h~~~v~~v~~~~~-----g~~l~s~s~D~~i~vwd~~~~~~~---~~~~--~h~~~v~~l~~~~~----~~~l~sgs~  400 (410)
T 1vyh_C          335 VGHDNWVRGVLFHSG-----GKFILSCADDKTLRVWDYKNKRCM---KTLN--AHEHFVTSLDFHKT----APYVVTGSV  400 (410)
T ss_dssp             ECCSSCEEEEEECSS-----SSCEEEEETTTEEEEECCTTSCCC---EEEE--CCSSCEEEEEECSS----SSCEEEEET
T ss_pred             ECCCCcEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCceE---EEEc--CCCCcEEEEEEcCC----CCEEEEEeC
Confidence            458889999999872     4567777776 5999998765333   3332  36778999999977    467999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      ||.||
T Consensus       401 D~~i~  405 (410)
T 1vyh_C          401 DQTVK  405 (410)
T ss_dssp             TSEEE
T ss_pred             CCcEE
Confidence            99986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.0004  Score=46.55  Aligned_cols=70  Identities=16%  Similarity=0.147  Sum_probs=52.8

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++.+++| |-     .+.+|+.+.+ .|.||++...   +.++.+.  .+...+.+++|+.+    ..+|++|+
T Consensus        14 l~~h~~~v~~~~~-~~-----~~~l~s~~~dg~v~vw~~~~~---~~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~   78 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VD-----DSKVASVSRDGTVRLWSKDDQ---WLGTVVY--TGQGFLNSVCYDSE----KELLLFGG   78 (313)
T ss_dssp             ECCCSSCEEEEEE-EE-----TTEEEEEETTSEEEEEEESSS---EEEEEEE--ECSSCEEEEEEETT----TTEEEEEE
T ss_pred             hhCCCCCcEEEEe-cC-----CCEEEEEEcCCcEEEEECCCC---EEEEEee--cCCccEEEEEECCC----CCEEEEec
Confidence            4679999999999 52     4457777776 5999999664   4444443  25788999999986    35699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus        79 ~dg~i~   84 (313)
T 3odt_A           79 KDTMIN   84 (313)
T ss_dssp             TTSCEE
T ss_pred             CCCeEE
Confidence            999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.63  E-value=0.00035  Score=49.81  Aligned_cols=71  Identities=20%  Similarity=0.272  Sum_probs=51.7

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEe-C--CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATV-G--SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtv-G--~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      +++.++.+++|+|.     .+.++++ |  .+.|.||++...   +..+.+.-..+...+.+++|+.+    ..+|++||
T Consensus       301 ~~~~~v~~~~~s~~-----~~~l~~~~g~~dg~i~v~~~~~~---~~~~~~~~~~h~~~v~~~~~s~d----g~~l~s~~  368 (401)
T 4aez_A          301 DAGSQVTSLIWSPH-----SKEIMSTHGFPDNNLSIWSYSSS---GLTKQVDIPAHDTRVLYSALSPD----GRILSTAA  368 (401)
T ss_dssp             ECSSCEEEEEECSS-----SSEEEEEECTTTCEEEEEEEETT---EEEEEEEEECCSSCCCEEEECTT----SSEEEEEC
T ss_pred             eCCCcEEEEEECCC-----CCeEEEEeecCCCcEEEEecCCc---cceeEEEecCCCCCEEEEEECCC----CCEEEEEe
Confidence            36678999999883     3445555 4  568999999875   33333332357788999999987    35799999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       369 ~dg~i~  374 (401)
T 4aez_A          369 SDENLK  374 (401)
T ss_dssp             TTSEEE
T ss_pred             CCCcEE
Confidence            999885

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.61  E-value=0.00065  Score=46.15  Aligned_cols=72  Identities=19%  Similarity=0.162  Sum_probs=55.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|...+..++|.+..   ...+++++|.+ .|.+++....   ++++.+.  .+...+.+++|+.+    ..+|++||.
T Consensus       168 ~~~~~~v~~~~~~~~~---~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~--~h~~~v~~~~~s~~----~~~l~s~s~  235 (340)
T 4aow_A          168 ESHSEWVSCVRFSPNS---SNPIIVSCGWDKLVKVWNLANC---KLKTNHI--GHTGYLNTVTVSPD----GSLCASGGK  235 (340)
T ss_dssp             SSCSSCEEEEEECSCS---SSCEEEEEETTSCEEEEETTTT---EEEEEEC--CCSSCEEEEEECTT----SSEEEEEET
T ss_pred             ccccCcccceEEccCC---CCcEEEEEcCCCEEEEEECCCC---ceeeEec--CCCCcEEEEEECCC----CCEEEEEeC
Confidence            4577889999998754   46678888776 5999998775   5566553  46778999999976    357999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       236 Dg~i~  240 (340)
T 4aow_A          236 DGQAM  240 (340)
T ss_dssp             TCEEE
T ss_pred             CCeEE
Confidence            99885

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.61  E-value=0.0002  Score=52.62  Aligned_cols=69  Identities=23%  Similarity=0.403  Sum_probs=53.0

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|-     .+++|++|.+ .|.||+.+ .   +.++.+.  .+...+.+++|+.|   ++ +|++||.
T Consensus       505 ~~h~~~v~~l~~s~d-----g~~l~s~~~dg~v~lwd~~-~---~~~~~~~--~h~~~v~~~~fs~d---g~-~l~s~~~  569 (577)
T 2ymu_A          505 TGHSSSVRGVAFSPD-----GQTIASASDDKTVKLWNRN-G---QLLQTLT--GHSSSVWGVAFSPD---GQ-TIASASS  569 (577)
T ss_dssp             ECCSSCEEEEEECTT-----SSCEEEEETTSEEEEECTT-S---CEEEEEE--CCSSCEEEEEECTT---SS-CEEEEET
T ss_pred             eCCCCCEEEEEEcCC-----CCEEEEEECcCEEEEEeCC-C---CEEEEEc--CCCCCEEEEEEcCC---CC-EEEEEeC
Confidence            568889999999983     4568888876 59999853 2   4556654  46788999999987   33 5889999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      ||.||
T Consensus       570 D~~i~  574 (577)
T 2ymu_A          570 DKTVK  574 (577)
T ss_dssp             TSCEE
T ss_pred             CCEEE
Confidence            99885

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=97.58  E-value=0.00037  Score=53.43  Aligned_cols=70  Identities=10%  Similarity=0.200  Sum_probs=55.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|...+.+++|+|     ..+.+|+.|.+ .|.|+++...   +.++.+.  .+...+.+++|+.+    ..+|++||.
T Consensus       427 ~~h~~~v~~v~~s~-----~g~~l~sgs~Dg~v~vwd~~~~---~~~~~~~--~h~~~v~~~~~s~~----~~~l~s~s~  492 (694)
T 3dm0_A          427 TGHSHFVEDVVLSS-----DGQFALSGSWDGELRLWDLAAG---VSTRRFV--GHTKDVLSVAFSLD----NRQIVSASR  492 (694)
T ss_dssp             ECCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTT---EEEEEEE--CCSSCEEEEEECTT----SSCEEEEET
T ss_pred             cCCCCcEEEEEECC-----CCCEEEEEeCCCcEEEEECCCC---cceeEEe--CCCCCEEEEEEeCC----CCEEEEEeC
Confidence            56889999999998     35678888866 6999999876   4555554  47788999999977    345999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.||
T Consensus       493 D~~i~  497 (694)
T 3dm0_A          493 DRTIK  497 (694)
T ss_dssp             TSCEE
T ss_pred             CCEEE
Confidence            99885

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.57  E-value=0.00057  Score=48.74  Aligned_cols=73  Identities=4%  Similarity=0.003  Sum_probs=56.4

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      |..++.+++|+|.     .+.+|+.+.+. |.||++...   +.++.+.. .+...+.+++|+..-.....+|++|+.+|
T Consensus       213 h~~~v~~~~~s~~-----~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg  283 (437)
T 3gre_A          213 RHGAVSSICIDEE-----CCVLILGTTRGIIDIWDIRFN---VLIRSWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKT  283 (437)
T ss_dssp             GGCCEEEEEECTT-----SCEEEEEETTSCEEEEETTTT---EEEEEEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred             CCCceEEEEECCC-----CCEEEEEcCCCeEEEEEcCCc---cEEEEEec-CCCCceEEEEeccccCCCccEEEEEcCCC
Confidence            7789999999874     56688777764 999999875   66777653 24568999999876333456899999999


Q ss_pred             EeC
Q psy8253          86 VIR   88 (88)
Q Consensus        86 ~Ir   88 (88)
                      .||
T Consensus       284 ~i~  286 (437)
T 3gre_A          284 FLT  286 (437)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            885

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.57  E-value=0.00019  Score=49.89  Aligned_cols=74  Identities=15%  Similarity=0.230  Sum_probs=48.8

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEc----CCCCC---eeEEEEEEcC--------CCCCceeEEEEeec
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYEC----PDGGS---IKLLQCYADP--------DIEENFYTCAWSMD   70 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~----~~~~~---~~~l~~~~d~--------d~~e~~y~~aWs~d   70 (88)
                      |..++.+++|+|..    ..++|+.+. +.|.||++    .....   +..+..+..+        .+...+.+++|+.+
T Consensus        44 ~~~~v~~~~~s~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           44 KLDNIVSSTWNPLD----ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             ECSCCSEEEECSSC----TTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred             ccCceEEEEECCCC----CcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence            45799999999853    237888887 47999999    55431   1123333321        14668999999986


Q ss_pred             CCCCceEEEEecCCcEeC
Q psy8253          71 LESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        71 ~~~~~plLa~aG~~G~Ir   88 (88)
                          ..+|++|+.+|.|+
T Consensus       120 ----~~~l~~~~~dg~i~  133 (425)
T 1r5m_A          120 ----GNSIVTGVENGELR  133 (425)
T ss_dssp             ----SSEEEEEETTSCEE
T ss_pred             ----CCEEEEEeCCCeEE
Confidence                35699999999774

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.57  E-value=0.00027  Score=50.87  Aligned_cols=59  Identities=24%  Similarity=0.334  Sum_probs=47.1

Q ss_pred             CCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          23 DQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        23 ~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      ...+++|+.-++.|.|++....   ++++.+.-..+.+.+.+++|+.+    ..+||+|+.+|.|+
T Consensus       114 S~~n~lAvgld~tV~lWd~~tg---~~~~~~~~~~~~~~V~sv~fspd----g~~lasgs~Dg~v~  172 (420)
T 4gga_A          114 SSGNVLAVALDNSVYLWSASSG---DILQLLQMEQPGEYISSVAWIKE----GNYLAVGTSSAEVQ  172 (420)
T ss_dssp             CTTSEEEEEETTEEEEEETTTC---CEEEEEECCSTTCCEEEEEECTT----SSEEEEEETTSCEE
T ss_pred             CCCCEEEEEeCCEEEEEECCCC---CEEEEEEecCCCCcEEEEEECCC----CCEEEEEECCCeEE
Confidence            3467899888889999998876   55666655567888999999987    34699999999875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.57  E-value=0.00029  Score=55.18  Aligned_cols=76  Identities=17%  Similarity=0.274  Sum_probs=55.2

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +.+.|..+|.+++|+|.     .+.+|+.|.+ .|.||++..+ ..+.++.+.  .+...+.+++|+.+  ....+|++|
T Consensus         4 ~l~gH~~~V~~l~~s~d-----g~~latg~~dg~I~vwd~~~~-~~~~~~~l~--~h~~~V~~l~~s~~--~~~~~l~s~   73 (753)
T 3jro_A            4 IANAHNELIHDAVLDYY-----GKRLATCSSDKTIKIFEVEGE-THKLIDTLT--GHEGPVWRVDWAHP--KFGTILASC   73 (753)
T ss_dssp             ----CCCCEEEECCCSS-----SCCEEEEETTTEEEEEEEETT-EEEEEEEEC--CCSSCEEEEEECCT--TSCSEEEEE
T ss_pred             ecccCcceeEEEEECCC-----CCeEEEEECCCcEEEEecCCC-CCccceecc--CCcCceEEEEecCC--CCCCEEEEE
Confidence            46789999999999984     3457777655 6999998753 235555553  47888999999987  224579999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      |.+|.|+
T Consensus        74 s~Dg~I~   80 (753)
T 3jro_A           74 SYDGKVL   80 (753)
T ss_dssp             ETTSCEE
T ss_pred             eCCCeEE
Confidence            9999885

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.55  E-value=0.00043  Score=55.75  Aligned_cols=70  Identities=19%  Similarity=0.414  Sum_probs=55.9

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|...+++++|+|     ..+.+|++|.+ .|.||+....   +.++.+.  .+...+.+++|+.+    ..+||+||.
T Consensus       612 ~~h~~~v~~~~~s~-----~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~--~h~~~v~~~~~s~~----~~~l~s~~~  677 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQ-----DGQRIASCGADKTLQVFKAETG---EKLLDIK--AHEDEVLCCAFSSD----DSYIATCSA  677 (1249)
T ss_dssp             CCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTC---CEEEEEC--CCSSCEEEEEECTT----SSEEEEEET
T ss_pred             ecccccEEEEEECC-----CCCEEEEEeCCCeEEEEECCCC---CEEEEec--cCCCCEEEEEEecC----CCEEEEEeC
Confidence            56889999999998     35678888876 5999999886   4444443  57889999999987    357999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       678 d~~v~  682 (1249)
T 3sfz_A          678 DKKVK  682 (1249)
T ss_dssp             TSEEE
T ss_pred             CCeEE
Confidence            99875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.55  E-value=0.00036  Score=50.52  Aligned_cols=75  Identities=16%  Similarity=0.328  Sum_probs=56.3

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC-----------eeEEEEEEcCCCCCceeEEEEeecCC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS-----------IKLLQCYADPDIEENFYTCAWSMDLE   72 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~-----------~~~l~~~~d~d~~e~~y~~aWs~d~~   72 (88)
                      +.|..++.+++|+|..    ..++|+.|.+ +|.||++...+.           .+++..+  ..+...+++++|+.+  
T Consensus       318 ~~h~~~v~~i~~sp~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~--  389 (430)
T 2xyi_A          318 ESHKDEIFQVQWSPHN----ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPN--  389 (430)
T ss_dssp             ECCSSCEEEEEECSSC----TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC--CCCSSCEEEEEECSS--
T ss_pred             ecCCCCEEEEEECCCC----CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc--CCCCCCceEEEECCC--
Confidence            4688999999999853    4678888765 799999987321           2455544  346778999999987  


Q ss_pred             CCceEEEEecCCcEeC
Q psy8253          73 SGRPLLAVAGSRAVIR   88 (88)
Q Consensus        73 ~~~plLa~aG~~G~Ir   88 (88)
                       +.-+|++++.+|.|+
T Consensus       390 -~~~~l~s~s~dg~i~  404 (430)
T 2xyi_A          390 -EPWIICSVSEDNIMQ  404 (430)
T ss_dssp             -STTEEEEEETTSEEE
T ss_pred             -CCCEEEEEECCCCEE
Confidence             233899999999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.55  E-value=0.00067  Score=47.54  Aligned_cols=71  Identities=15%  Similarity=0.269  Sum_probs=52.4

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEc-CCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYAD-PDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d-~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      .|..++.+++|+|..    ...+|+++.+ .|.|+++..    +.++.+.. ...+..+.+++|+.+    ..+|++|+.
T Consensus       116 ~h~~~v~~~~~~~~~----~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~  183 (383)
T 3ei3_B          116 GPGDAITGMKFNQFN----TNQLFVSSIRGATTLRDFSG----SVIQVFAKTDSWDYWYCCVDVSVS----RQMLATGDS  183 (383)
T ss_dssp             STTCBEEEEEEETTE----EEEEEEEETTTEEEEEETTS----CEEEEEECCCCSSCCEEEEEEETT----TTEEEEEET
T ss_pred             CcCCceeEEEeCCCC----CCEEEEEeCCCEEEEEECCC----CceEEEeccCCCCCCeEEEEECCC----CCEEEEECC
Confidence            588999999999853    4567777765 699999984    22333322 234678999999976    347999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       184 d~~i~  188 (383)
T 3ei3_B          184 TGRLL  188 (383)
T ss_dssp             TSEEE
T ss_pred             CCCEE
Confidence            99874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.52  E-value=0.00044  Score=50.72  Aligned_cols=73  Identities=8%  Similarity=0.041  Sum_probs=56.1

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCC-CeeEEEEEEcCCCCCc-eeEEEEee--cCCCCceEEEE
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGG-SIKLLQCYADPDIEEN-FYTCAWSM--DLESGRPLLAV   80 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~-~~~~l~~~~d~d~~e~-~y~~aWs~--d~~~~~plLa~   80 (88)
                      ..|...+.+++|+|-     .+.+|+.+++.|.||++.... +.+.++.+.  .+.+. +.+++|+.  +    ..+||+
T Consensus        15 ~~~~~~v~~~~~spd-----g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~--~h~~~~v~~~~~sp~~~----~~~l~s   83 (615)
T 1pgu_A           15 STQRNFTTHLSYDPT-----TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT--GHGSSVVTTVKFSPIKG----SQYLCS   83 (615)
T ss_dssp             CCCTTCCCCCEEETT-----TTEEEEEETTEEEEEECCSSCCSSCSEEEEC--TTTTSCEEEEEECSSTT----CCEEEE
T ss_pred             CCccCceeEEEECCC-----CCEEEEecCCeEEEEECCCCCCccccceEEe--cCCCceEEEEEECcCCC----CCEEEE
Confidence            457788999999983     457888889999999998641 234555553  46778 99999998  6    357999


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      |+.+|.|+
T Consensus        84 ~~~dg~v~   91 (615)
T 1pgu_A           84 GDESGKVI   91 (615)
T ss_dssp             EETTSEEE
T ss_pred             ecCCCEEE
Confidence            99999885

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.49  E-value=0.00084  Score=47.83  Aligned_cols=71  Identities=11%  Similarity=0.211  Sum_probs=52.7

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeC---CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVG---SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG---~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      .+.|..++.+++|+|..    ..++|+.|   .+.|.+|++...   +.++.+.   ....+.+++|+.+   + .+|++
T Consensus       255 ~~~~~~~v~~~~~~p~~----~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~---~~~~v~~~~~s~~---~-~~l~~  320 (401)
T 4aez_A          255 KTNHNAAVKAVAWCPWQ----SNLLATGGGTMDKQIHFWNAATG---ARVNTVD---AGSQVTSLIWSPH---S-KEIMS  320 (401)
T ss_dssp             ECCCSSCCCEEEECTTS----TTEEEEECCTTTCEEEEEETTTC---CEEEEEE---CSSCEEEEEECSS---S-SEEEE
T ss_pred             ecCCcceEEEEEECCCC----CCEEEEecCCCCCEEEEEECCCC---CEEEEEe---CCCcEEEEEECCC---C-CeEEE
Confidence            35688899999999843    56888887   568999999876   4555553   4677999999987   3 34555


Q ss_pred             --ecCCcEeC
Q psy8253          81 --AGSRAVIR   88 (88)
Q Consensus        81 --aG~~G~Ir   88 (88)
                        |+.+|.|+
T Consensus       321 ~~g~~dg~i~  330 (401)
T 4aez_A          321 THGFPDNNLS  330 (401)
T ss_dssp             EECTTTCEEE
T ss_pred             EeecCCCcEE
Confidence              44788874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.0003  Score=49.15  Aligned_cols=74  Identities=9%  Similarity=0.086  Sum_probs=49.0

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC-C
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS-R   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~-~   84 (88)
                      .|..++.+++|+|-     ...+|+.+.+.|.|+++.....+..++.+.+....-.-.+++|+.+   + .+|++++. +
T Consensus       212 ~h~~~v~~l~fs~~-----g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g-~~l~~~s~~d  282 (343)
T 3lrv_A          212 DEEAKIKEVKFADN-----GYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS---G-KNMIAYSNES  282 (343)
T ss_dssp             CTTSCEEEEEECTT-----SSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT---S-SEEEEEETTT
T ss_pred             cCCCCEEEEEEeCC-----CCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCC---C-CEEEEecCCC
Confidence            38899999999983     4678888888999999988755555554432111111156888876   3 45777655 7


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      +.|+
T Consensus       283 ~~i~  286 (343)
T 3lrv_A          283 NSLT  286 (343)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            7663

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.00039  Score=55.01  Aligned_cols=67  Identities=10%  Similarity=0.095  Sum_probs=45.4

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCC---CCceeEEEEeecCCCCceEEEEec
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDI---EENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~---~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      |...+.+|+|+|     ..+.+|+.+.+ .|.|++...     ++..+. .+.   ...+.+++||.|    ..+||+||
T Consensus        84 ~~~~V~~vawSP-----dG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPD----G~~LAsgs  148 (588)
T 2j04_A           84 PVCYPRVCKPSP-----IDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPI----ESSIVVGN  148 (588)
T ss_dssp             CSCCEEEEEECS-----SSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSS----SSCEEEEE
T ss_pred             CCCcEEEEEECC-----CCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCC----CCEEEEEc
Confidence            445677777777     34557777666 478887322     444443 221   457999999988    34599999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.||
T Consensus       149 ~DGtVk  154 (588)
T 2j04_A          149 EDGELQ  154 (588)
T ss_dssp             TTSEEE
T ss_pred             CCCEEE
Confidence            999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.0016  Score=45.47  Aligned_cols=74  Identities=19%  Similarity=0.275  Sum_probs=55.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCC----CCCceeEEEEeecCCCCceEEE
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPD----IEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d----~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      ..|..++.+++|+|..    ..++|+.+.+ .|.||++...   +.++.+....    +...+.+++|+.+   +..+|+
T Consensus       162 ~~~~~~v~~~~~~~~~----~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~  231 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSL----AHVFASAGSSNFASIWDLKAK---KEVIHLSYTSPNSGIKQQLSVVEWHPK---NSTRVA  231 (416)
T ss_dssp             CCSSCCCCEEEECSSC----TTEEEEESSSSCEEEEETTTT---EEEEEECCCCCSSCCCCCEEEEEECSS---CTTEEE
T ss_pred             cCCCCCeeEEEeCCCC----CcEEEEEcCCCCEEEEECCCC---CcceEEeccccccccCCceEEEEECCC---CCCEEE
Confidence            4688899999999842    5678888776 5999999876   5555554321    1788999999977   345799


Q ss_pred             EecCCc---EeC
Q psy8253          80 VAGSRA---VIR   88 (88)
Q Consensus        80 ~aG~~G---~Ir   88 (88)
                      +++.+|   .|+
T Consensus       232 ~~~~d~~~~~i~  243 (416)
T 2pm9_A          232 TATGSDNDPSIL  243 (416)
T ss_dssp             EEECCSSSCCCC
T ss_pred             EEECCCCCceEE
Confidence            999887   664

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.00071  Score=49.05  Aligned_cols=73  Identities=12%  Similarity=0.027  Sum_probs=52.3

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCC-----------------------------
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDI-----------------------------   58 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~-----------------------------   58 (88)
                      ..|+..++|+|-.     +++++..++.|.||++..+..++.+..+.+...                             
T Consensus         4 ~~p~~~v~~s~dg-----~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (450)
T 2vdu_B            4 IHPLQNLLTSRDG-----SLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS   78 (450)
T ss_dssp             ECCCCEEEECSSS-----SEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------
T ss_pred             cccEEEEEecCCC-----CEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence            3588899988743     366666788999999987754556776654211                             


Q ss_pred             -----------------------CCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          59 -----------------------EENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        59 -----------------------~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                                             ...+.+++|+.+   +.-|+++|+.+|.|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---~~~l~~~~~~dg~v~  128 (450)
T 2vdu_B           79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD---ESRLIACADSDKSLL  128 (450)
T ss_dssp             ---------------------CCCCCEEEEEECTT---SSEEEEEEGGGTEEE
T ss_pred             CcCccccccCccccCCCCCCCccCCceEEEEEcCC---CCEEEEEECCCCeEE
Confidence                                   115999999987   455569999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.43  E-value=0.001  Score=47.57  Aligned_cols=71  Identities=18%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..++++++|+|-     .+.+++++.+ .|.|+++...   +.+..+.   ....+.+++|+..  ++ .+|++|+
T Consensus       161 ~~~h~~~v~~~~~~p~-----~~~l~s~s~d~~v~iwd~~~~---~~~~~~~---~~~~v~~~~~~~~--~~-~~l~~~s  226 (393)
T 1erj_A          161 LQGHEQDIYSLDYFPS-----GDKLVSGSGDRTVRIWDLRTG---QCSLTLS---IEDGVTTVAVSPG--DG-KYIAAGS  226 (393)
T ss_dssp             ECCCSSCEEEEEECTT-----SSEEEEEETTSEEEEEETTTT---EEEEEEE---CSSCEEEEEECST--TC-CEEEEEE
T ss_pred             EccCCCCEEEEEEcCC-----CCEEEEecCCCcEEEEECCCC---eeEEEEE---cCCCcEEEEEECC--CC-CEEEEEc
Confidence            3568899999999983     3467777665 6999998775   4444443   4567899999974  23 4699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.||
T Consensus       227 ~d~~v~  232 (393)
T 1erj_A          227 LDRAVR  232 (393)
T ss_dssp             TTSCEE
T ss_pred             CCCcEE
Confidence            999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.42  E-value=0.0011  Score=45.79  Aligned_cols=72  Identities=14%  Similarity=0.156  Sum_probs=55.2

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .|..++.+++|+|..    ..+|++++. +.|.|+++...   +.++.+.   ..+...+++|+.... ...+|++|+.+
T Consensus        97 ~~~~~v~~~~~~~~~----~~~l~s~~~d~~i~iwd~~~~---~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~  165 (408)
T 4a11_B           97 VHRYSVETVQWYPHD----TGMFTSSSFDKTLKVWDTNTL---QTADVFN---FEETVYSHHMSPVST-KHCLVAVGTRG  165 (408)
T ss_dssp             CCSSCEEEEEECTTC----TTCEEEEETTSEEEEEETTTT---EEEEEEE---CSSCEEEEEECSSCS-SCCEEEEEESS
T ss_pred             cCCCcEEEEEEccCC----CcEEEEEeCCCeEEEeeCCCC---ccceecc---CCCceeeeEeecCCC-CCcEEEEEcCC
Confidence            489999999999843    456888875 47999999876   5666663   577899999998743 24579999999


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.|+
T Consensus       166 ~~v~  169 (408)
T 4a11_B          166 PKVQ  169 (408)
T ss_dssp             SSEE
T ss_pred             CeEE
Confidence            8774

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.42  E-value=0.00082  Score=49.30  Aligned_cols=75  Identities=8%  Similarity=-0.006  Sum_probs=55.4

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCC------CCceE
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLE------SGRPL   77 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~------~~~pl   77 (88)
                      ..|..++.+++|+|-     .+.+|+.+.+ .|.||++...   +.++.+.. .+...+.+++|+....      ....+
T Consensus       485 ~~~~~~v~~~~~s~~-----g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~  555 (615)
T 1pgu_A          485 TPLRAKPSYISISPS-----ETYIAAGDVMGKILLYDLQSR---EVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDL  555 (615)
T ss_dssp             SCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTT---EEEECCSC-CCSSCEEEEEECCCC------CCSCCE
T ss_pred             CCccCceEEEEECCC-----CCEEEEcCCCCeEEEeeCCCC---cceeEeec-CCCCceeEEEEcCccccccccccCCCE
Confidence            568889999999883     4578888765 7999999876   55554421 1678899999998210      02467


Q ss_pred             EEEecCCcEeC
Q psy8253          78 LAVAGSRAVIR   88 (88)
Q Consensus        78 La~aG~~G~Ir   88 (88)
                      ||+|+.+|.|+
T Consensus       556 l~~~~~dg~i~  566 (615)
T 1pgu_A          556 VATGSLDTNIF  566 (615)
T ss_dssp             EEEEETTSCEE
T ss_pred             EEEEcCCCcEE
Confidence            99999999885

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.41  E-value=0.0011  Score=47.67  Aligned_cols=69  Identities=14%  Similarity=0.214  Sum_probs=50.4

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeC--CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVG--SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG--~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      +...+.++.|+|-.    ..++++.|  .+.|.|++....   +.++.+.  .+...+.+++|+.|   + .+||+||.|
T Consensus       319 ~~~~v~~~~~~~~~----~~lv~~sg~~d~~I~iwd~~~~---~~v~~l~--gH~~~V~~l~~spd---g-~~l~S~s~D  385 (420)
T 4gga_A          319 AHSQVCSILWSPHY----KELISGHGFAQNQLVIWKYPTM---AKVAELK--GHTSRVLSLTMSPD---G-ATVASAAAD  385 (420)
T ss_dssp             CSSCEEEEEEETTT----TEEEEEECTTTCCEEEEETTTC---CEEEEEC--CCSSCEEEEEECTT---S-SCEEEEETT
T ss_pred             cccceeeeeecCCC----CeEEEEEecCCCEEEEEECCCC---cEEEEEc--CCCCCEEEEEEcCC---C-CEEEEEecC
Confidence            44567788887743    44555554  357999999875   4555553  47788999999987   2 459999999


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.||
T Consensus       386 ~tvr  389 (420)
T 4gga_A          386 ETLR  389 (420)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            9986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.40  E-value=0.0011  Score=50.70  Aligned_cols=70  Identities=9%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|-     .+.+|+.+.+ .|.||++...   +.++.+.  .+...+.+++|+.+    .++|++|+.
T Consensus        52 ~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~vw~~~~~---~~~~~~~--~~~~~v~~~~~s~~----~~~l~~~~~  117 (814)
T 3mkq_A           52 QVTETPVRAGKFIAR-----KNWIIVGSDDFRIRVFNYNTG---EKVVDFE--AHPDYIRSIAVHPT----KPYVLSGSD  117 (814)
T ss_dssp             ECCSSCEEEEEEEGG-----GTEEEEEETTSEEEEEETTTC---CEEEEEE--CCSSCEEEEEECSS----SSEEEEEET
T ss_pred             ecCCCcEEEEEEeCC-----CCEEEEEeCCCeEEEEECCCC---cEEEEEe--cCCCCEEEEEEeCC----CCEEEEEcC
Confidence            468889999999993     4567777765 7999999876   3444443  36778999999987    457999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       118 dg~i~  122 (814)
T 3mkq_A          118 DLTVK  122 (814)
T ss_dssp             TSEEE
T ss_pred             CCEEE
Confidence            99874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.001  Score=53.64  Aligned_cols=71  Identities=8%  Similarity=-0.050  Sum_probs=54.3

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC--------------------------------------
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS--------------------------------------   46 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~--------------------------------------   46 (88)
                      .|...+.+|+|+|-     .+.+|+.+.+ .|.||++.....                                      
T Consensus       486 ~h~~~V~svafspd-----g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (902)
T 2oaj_A          486 AKELAVDKISFAAE-----TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG  560 (902)
T ss_dssp             SSSCCEEEEEEETT-----TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred             CCCCceeEEEecCC-----CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence            68889999999993     4678888876 699999875410                                      


Q ss_pred             ----eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          47 ----IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        47 ----~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                          ++.++...  .+...+.+++||.|   |  +||+|+.+|.||
T Consensus       561 ~~~g~~~~~~l~--~h~~~V~svafSpd---G--~lAsgs~D~tv~  599 (902)
T 2oaj_A          561 VRQGFMPSTAVH--ANKGKTSAINNSNI---G--FVGIAYAAGSLM  599 (902)
T ss_dssp             CSEEEEEEEEEC--CCSCSEEEEEECBT---S--EEEEEETTSEEE
T ss_pred             CCCccceeEEEE--cCCCcEEEEEecCC---c--EEEEEeCCCcEE
Confidence                12344442  47889999999976   4  799999999875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.0012  Score=51.65  Aligned_cols=77  Identities=21%  Similarity=0.313  Sum_probs=58.2

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ...|..++.+++|+|-.   ..+.+|+++.+ .|.|+++..+. ...++.+.  .+...+.+++|+.+  ....+|++|+
T Consensus        49 l~~h~~~V~~l~~s~~~---~~~~l~s~s~Dg~I~vwd~~~~~-~~~~~~~~--~h~~~V~~v~~sp~--~~~~~l~sgs  120 (753)
T 3jro_A           49 LTGHEGPVWRVDWAHPK---FGTILASCSYDGKVLIWKEENGR-WSQIAVHA--VHSASVNSVQWAPH--EYGPLLLVAS  120 (753)
T ss_dssp             ECCCSSCEEEEEECCTT---SCSEEEEEETTSCEEEEEEETTE-EEEEEEEC--CCSSCEEEEEECCG--GGCSEEEEEE
T ss_pred             ccCCcCceEEEEecCCC---CCCEEEEEeCCCeEEEEECCCCc-cccccccc--CCCCCeEEEEECCC--CCCCEEEEEe
Confidence            35688999999999853   35788888876 69999988752 33444442  47788999999987  3245699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus       121 ~dg~I~  126 (753)
T 3jro_A          121 SDGKVS  126 (753)
T ss_dssp             TTSEEE
T ss_pred             CCCcEE
Confidence            999885

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.0022  Score=43.65  Aligned_cols=69  Identities=7%  Similarity=0.190  Sum_probs=52.3

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|.     .+.+|+++.+ .|.|+++...   +.++.+.   ....+.+++|+.+    ..+|++++.
T Consensus        71 ~~h~~~v~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~---~~~~~~~---~~~~v~~~~~~~~----~~~l~~~~~  135 (369)
T 3zwl_B           71 DGHTGTIWSIDVDCF-----TKYCVTGSADYSIKLWDVSNG---QCVATWK---SPVPVKRVEFSPC----GNYFLAILD  135 (369)
T ss_dssp             CCCSSCEEEEEECTT-----SSEEEEEETTTEEEEEETTTC---CEEEEEE---CSSCEEEEEECTT----SSEEEEEEC
T ss_pred             hhcCCcEEEEEEcCC-----CCEEEEEeCCCeEEEEECCCC---cEEEEee---cCCCeEEEEEccC----CCEEEEecC
Confidence            568889999999982     4577888766 6999999876   5556664   5678999999976    345777777


Q ss_pred             C-----cEeC
Q psy8253          84 R-----AVIR   88 (88)
Q Consensus        84 ~-----G~Ir   88 (88)
                      +     |.|+
T Consensus       136 ~~~~~~g~i~  145 (369)
T 3zwl_B          136 NVMKNPGSIN  145 (369)
T ss_dssp             CBTTBCCEEE
T ss_pred             CccCCCCEEE
Confidence            7     7663

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.34  E-value=0.0014  Score=52.74  Aligned_cols=72  Identities=22%  Similarity=0.440  Sum_probs=57.1

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|-     .+.+|+++.+ .|.|+++...   +.++.+.  .+...+.+++|+.+  ....+|++|+.
T Consensus       654 ~~h~~~v~~~~~s~~-----~~~l~s~~~d~~v~vwd~~~~---~~~~~~~--~~~~~v~~~~~~~~--~~~~~l~sg~~  721 (1249)
T 3sfz_A          654 KAHEDEVLCCAFSSD-----DSYIATCSADKKVKIWDSATG---KLVHTYD--EHSEQVNCCHFTNK--SNHLLLATGSN  721 (1249)
T ss_dssp             CCCSSCEEEEEECTT-----SSEEEEEETTSEEEEEETTTC---CEEEEEE--CCSSCEEEEEECSS--SSCCEEEEEET
T ss_pred             ccCCCCEEEEEEecC-----CCEEEEEeCCCeEEEEECCCC---ceEEEEc--CCCCcEEEEEEecC--CCceEEEEEeC
Confidence            468899999999983     4578888765 6999999876   5566664  46888999999986  44678999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       722 d~~v~  726 (1249)
T 3sfz_A          722 DFFLK  726 (1249)
T ss_dssp             TSCEE
T ss_pred             CCeEE
Confidence            99874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.0014  Score=47.50  Aligned_cols=71  Identities=10%  Similarity=0.092  Sum_probs=50.5

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcC--CCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECP--DGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~--~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      |..++.+++|+|-.    ..++|+.+. +.|.||++.  ....+..+...   .....+.+++|+.+    ..+|++|+.
T Consensus       101 ~~~~v~~~~~s~d~----~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~----~~~l~~~~~  169 (450)
T 2vdu_B          101 IYSYIRNLRLTSDE----SRLIACADSDKSLLVFDVDKTSKNVLKLRKRF---CFSKRPNAISIAED----DTTVIIADK  169 (450)
T ss_dssp             CCCCEEEEEECTTS----SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---ECSSCEEEEEECTT----SSEEEEEET
T ss_pred             cCCceEEEEEcCCC----CEEEEEECCCCeEEEEECcCCCCceeeeeecc---cCCCCceEEEEcCC----CCEEEEEeC
Confidence            45579999999832    333477654 579999998  44345555442   35678999999976    356899998


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       170 ~g~v~  174 (450)
T 2vdu_B          170 FGDVY  174 (450)
T ss_dssp             TSEEE
T ss_pred             CCcEE
Confidence            88874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.0019  Score=43.19  Aligned_cols=68  Identities=16%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|-.     . +++.+ .+.|.||++...   +.++.+..  +...+.+++|+.+.    . |++|+.
T Consensus       222 ~~~~~~i~~~~~~~~~-----~-l~~~~~dg~v~iwd~~~~---~~~~~~~~--~~~~i~~~~~~~~~----~-~~~~~~  285 (313)
T 3odt_A          222 EGHESFVYCIKLLPNG-----D-IVSCGEDRTVRIWSKENG---SLKQVITL--PAISIWSVDCMSNG----D-IIVGSS  285 (313)
T ss_dssp             ECCSSCEEEEEECTTS-----C-EEEEETTSEEEEECTTTC---CEEEEEEC--SSSCEEEEEECTTS----C-EEEEET
T ss_pred             hcCCceEEEEEEecCC-----C-EEEEecCCEEEEEECCCC---ceeEEEec--cCceEEEEEEccCC----C-EEEEeC
Confidence            4688899999999843     3 45555 457999998876   45555543  46689999999872    2 667899


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       286 dg~i~  290 (313)
T 3odt_A          286 DNLVR  290 (313)
T ss_dssp             TSCEE
T ss_pred             CCcEE
Confidence            99875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=97.26  E-value=0.0018  Score=46.22  Aligned_cols=68  Identities=12%  Similarity=0.174  Sum_probs=50.1

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      +|..++++++|+|     +.+.+|+++.+.+.++......   .+.......+...+.+++|+.+    ..+|++++.++
T Consensus       174 ~~~~~V~~v~fsp-----dg~~l~s~s~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~v~fspd----g~~l~~~s~d~  241 (365)
T 4h5i_A          174 ETRGEVKDLHFST-----DGKVVAYITGSSLEVISTVTGS---CIARKTDFDKNWSLSKINFIAD----DTVLIAASLKK  241 (365)
T ss_dssp             ECSSCCCEEEECT-----TSSEEEEECSSCEEEEETTTCC---EEEEECCCCTTEEEEEEEEEET----TEEEEEEEESS
T ss_pred             CCCCceEEEEEcc-----CCceEEeccceeEEEEEeccCc---ceeeeecCCCCCCEEEEEEcCC----CCEEEEEecCC
Confidence            4778899999998     3568999999999999988763   2222233357888999999987    34566666554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.0036  Score=43.35  Aligned_cols=69  Identities=16%  Similarity=0.095  Sum_probs=52.4

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|-     . .+++.+.+ .|.||++...   +.++.+.  .+...+.+++|+.+    ..+|++|+.
T Consensus       286 ~~~~~~i~~~~~~~~-----~-~l~~~~~d~~i~i~d~~~~---~~~~~~~--~~~~~i~~~~~s~~----~~~l~~~~~  350 (425)
T 1r5m_A          286 YGHSQSIVSASWVGD-----D-KVISCSMDGSVRLWSLKQN---TLLALSI--VDGVPIFAGRISQD----GQKYAVAFM  350 (425)
T ss_dssp             CCCSSCEEEEEEETT-----T-EEEEEETTSEEEEEETTTT---EEEEEEE--CTTCCEEEEEECTT----SSEEEEEET
T ss_pred             cCCCccEEEEEECCC-----C-EEEEEeCCCcEEEEECCCC---cEeEecc--cCCccEEEEEEcCC----CCEEEEEEC
Confidence            458889999999982     2 56666655 7999999775   5566554  35678999999976    357999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       351 dg~i~  355 (425)
T 1r5m_A          351 DGQVN  355 (425)
T ss_dssp             TSCEE
T ss_pred             CCeEE
Confidence            99874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.22  E-value=0.0035  Score=44.93  Aligned_cols=71  Identities=7%  Similarity=0.151  Sum_probs=55.3

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|-     . .+++.+.+ .|.|+++...   +.++.+.  .+...+.+++|+..+  +..+|++|+.
T Consensus       159 ~~h~~~V~~l~~~~~-----~-~l~s~s~dg~i~vwd~~~~---~~~~~~~--~h~~~v~~l~~~~~~--~~~~l~s~s~  225 (464)
T 3v7d_B          159 SGHDGGVWALKYAHG-----G-ILVSGSTDRTVRVWDIKKG---CCTHVFE--GHNSTVRCLDIVEYK--NIKYIVTGSR  225 (464)
T ss_dssp             CCCSSCEEEEEECST-----T-EEEEEETTSCEEEEETTTT---EEEEEEC--CCSSCEEEEEEEESS--SCEEEEEEET
T ss_pred             eCCCcCEEEEEEcCC-----C-EEEEEeCCCCEEEEECCCC---cEEEEEC--CCCCccEEEEEecCC--CCCEEEEEcC
Confidence            468899999999752     2 67777776 6999999876   5566663  478899999999762  3567999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       226 d~~i~  230 (464)
T 3v7d_B          226 DNTLH  230 (464)
T ss_dssp             TSCEE
T ss_pred             CCcEE
Confidence            99874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.13  E-value=0.0018  Score=46.56  Aligned_cols=70  Identities=17%  Similarity=0.199  Sum_probs=50.9

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .|..++.+++|++       +.+|+.+.+ .|.||++.....+..+...........+.+++|+.+    ..+||+|+.+
T Consensus       360 ~~~~~v~~~~~~~-------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~la~~~~d  428 (445)
T 2ovr_B          360 KHQSAVTCLQFNK-------NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT----KLVCAVGSRN  428 (445)
T ss_dssp             SCSSCEEEEEECS-------SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS----EEEEEEECSS
T ss_pred             CCCCCEEEEEECC-------CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC----EEEEEEcccC
Confidence            4788999999953       567777755 799999988633333333333356788999999965    4679999999


Q ss_pred             cE
Q psy8253          85 AV   86 (88)
Q Consensus        85 G~   86 (88)
                      |.
T Consensus       429 g~  430 (445)
T 2ovr_B          429 GT  430 (445)
T ss_dssp             SS
T ss_pred             CC
Confidence            95

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.003  Score=48.20  Aligned_cols=76  Identities=7%  Similarity=-0.002  Sum_probs=53.6

Q ss_pred             cCCCCeEEEEEecCCCC-CCCCEEEEeCCC-eEEEEEcCCCCCe--------eEEEEEEcCCCCCceeEEEEeecCCCCc
Q psy8253           6 DHGQPLFGAQFNHLLKD-DQPRIFATVGSN-RVSIYECPDGGSI--------KLLQCYADPDIEENFYTCAWSMDLESGR   75 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~-~~~~~fAtvG~~-~v~Vy~~~~~~~~--------~~l~~~~d~d~~e~~y~~aWs~d~~~~~   75 (88)
                      .|...+++++|+|.... +...++|+++.+ .|.|+++......        +.+..+  ..+...+.+++|+.+    .
T Consensus       205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l--~~h~~~v~sv~~s~~----~  278 (524)
T 2j04_B          205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL--SLADSLITTFDFLSP----T  278 (524)
T ss_dssp             ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE--CCTTTCEEEEEESSS----S
T ss_pred             ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE--EcCCCCEEEEEecCC----C
Confidence            45678999999996321 235789999887 5999999764211        011122  235678999999843    2


Q ss_pred             eEEEEecCCcEeC
Q psy8253          76 PLLAVAGSRAVIR   88 (88)
Q Consensus        76 plLa~aG~~G~Ir   88 (88)
                       .||+|+.||.|+
T Consensus       279 -~lasgs~DgtV~  290 (524)
T 2j04_B          279 -TVVCGFKNGFVA  290 (524)
T ss_dssp             -EEEEEETTSEEE
T ss_pred             -eEEEEeCCCEEE
Confidence             699999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.0058  Score=49.22  Aligned_cols=75  Identities=3%  Similarity=-0.058  Sum_probs=53.2

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe-EEEEEcCCCCCeeEEEEE--Ec--CCCCCceeEEEEeecCCC--C--c
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR-VSIYECPDGGSIKLLQCY--AD--PDIEENFYTCAWSMDLES--G--R   75 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~-v~Vy~~~~~~~~~~l~~~--~d--~d~~e~~y~~aWs~d~~~--~--~   75 (88)
                      +.|..+|.+++|+|     .. .+|+.+.++ |.|++....   .++...  ..  +.+.+.+.+++|+.....  |  .
T Consensus       572 ~~h~~~V~svafSp-----dG-~lAsgs~D~tv~lwd~~~~---~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~  642 (902)
T 2oaj_A          572 HANKGKTSAINNSN-----IG-FVGIAYAAGSLMLIDRRGP---AIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSS  642 (902)
T ss_dssp             CCCSCSEEEEEECB-----TS-EEEEEETTSEEEEEETTTT---EEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEE
T ss_pred             EcCCCcEEEEEecC-----Cc-EEEEEeCCCcEEEEECCCC---eEEEEeehhHhccccccceEEEEEEEEecCCCCCcc
Confidence            56899999999997     23 688888775 899996443   344321  11  157788999999922111  1  3


Q ss_pred             eEEEEecCCcEeC
Q psy8253          76 PLLAVAGSRAVIR   88 (88)
Q Consensus        76 plLa~aG~~G~Ir   88 (88)
                      .+|++|+.||.||
T Consensus       643 ~~l~sgs~D~tv~  655 (902)
T 2oaj_A          643 ILMVCGTDMGEVI  655 (902)
T ss_dssp             EEEEEEETTSEEE
T ss_pred             eEEEEEecCCcEE
Confidence            6899999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.07  E-value=0.0073  Score=42.36  Aligned_cols=77  Identities=1%  Similarity=-0.101  Sum_probs=52.8

Q ss_pred             ccCCCCeEEEEEecCCCC----------------CCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEE
Q psy8253           5 EDHGQPLFGAQFNHLLKD----------------DQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAW   67 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~----------------~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aW   67 (88)
                      +.|..++..++|.|-...                ...+.+|+.+.+ .|.||++...   +.+..+.. .+...+.+++|
T Consensus       223 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~-~~~~~v~~~~~  298 (420)
T 3vl1_A          223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPS-KFTCSCNSLTV  298 (420)
T ss_dssp             TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECC-TTSSCEEEEEE
T ss_pred             CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEccc-ccCCCceeEEE
Confidence            356778888888653210                235567776665 6999999876   33333322 46778999999


Q ss_pred             eecCCCCceEEEEecCCcEeC
Q psy8253          68 SMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        68 s~d~~~~~plLa~aG~~G~Ir   88 (88)
                      +.+   +..+|++|+.+|.|+
T Consensus       299 ~~~---~~~~l~~g~~dg~i~  316 (420)
T 3vl1_A          299 DGN---NANYIYAGYENGMLA  316 (420)
T ss_dssp             CSS---CTTEEEEEETTSEEE
T ss_pred             eCC---CCCEEEEEeCCCeEE
Confidence            976   344899999999885

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.00  E-value=0.007  Score=43.34  Aligned_cols=68  Identities=15%  Similarity=0.268  Sum_probs=52.4

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++++++|+|-     .+.+++.+.+ .|.||++...   +.++.+.  .+...+.+++|+      ..+|++|+.
T Consensus       307 ~~~~~~v~~~~~~~~-----~~~l~sg~~dg~i~vwd~~~~---~~~~~~~--~h~~~v~~~~~~------~~~l~s~s~  370 (464)
T 3v7d_B          307 SGHTDRIYSTIYDHE-----RKRCISASMDTTIRIWDLENG---ELMYTLQ--GHTALVGLLRLS------DKFLVSAAA  370 (464)
T ss_dssp             CCCSSCEEEEEEETT-----TTEEEEEETTSCEEEEETTTT---EEEEEEC--CCSSCEEEEEEC------SSEEEEEET
T ss_pred             cCCCCCEEEEEEcCC-----CCEEEEEeCCCcEEEEECCCC---cEEEEEe--CCCCcEEEEEEc------CCEEEEEeC
Confidence            468889999999982     3457777665 6999999876   5666664  467889999996      246999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.||
T Consensus       371 dg~v~  375 (464)
T 3v7d_B          371 DGSIR  375 (464)
T ss_dssp             TSEEE
T ss_pred             CCcEE
Confidence            99885

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.0023  Score=48.86  Aligned_cols=65  Identities=8%  Similarity=0.044  Sum_probs=48.1

Q ss_pred             CeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          10 PLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        10 ~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      ++++++|+|..     +.||+.+.+ .|.|+.+.....+..+.     .+...+++++|+.+    .++||+||.||.||
T Consensus       357 ~v~~v~fsp~~-----~~l~s~~~d~tv~lwd~~~~~~~~~l~-----gH~~~V~sva~Sp~----g~~l~Sgs~Dgtv~  422 (524)
T 2j04_B          357 NLVPVVYCPQI-----YSYIYSDGASSLRAVPSRAAFAVHPLV-----SRETTITAIGVSRL----HPMVLAGSADGSLI  422 (524)
T ss_dssp             SCCCEEEETTT-----TEEEEECSSSEEEEEETTCTTCCEEEE-----ECSSCEEEEECCSS----CCBCEEEETTTEEE
T ss_pred             cccceEeCCCc-----CeEEEeCCCCcEEEEECcccccceeee-----cCCCceEEEEeCCC----CCeEEEEECCCEEE
Confidence            58999999953     347776666 59999987653223332     36778999999976    35699999999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.86  E-value=0.0015  Score=48.32  Aligned_cols=72  Identities=8%  Similarity=0.081  Sum_probs=49.2

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEE----EeCCC-eEEEEEcCCC--------CCeeEEEEEEcCCCCCceeEEEEeecCCC
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFA----TVGSN-RVSIYECPDG--------GSIKLLQCYADPDIEENFYTCAWSMDLES   73 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fA----tvG~~-~v~Vy~~~~~--------~~~~~l~~~~d~d~~e~~y~~aWs~d~~~   73 (88)
                      +..++.+++|+|.     .+.+|    +.+.+ .|.||++...        .++..++.+  ..+...+.+++|+.+   
T Consensus        91 ~~~~v~~l~~spd-----g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~---  160 (434)
T 2oit_A           91 MKFPIHHLALSCD-----NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL--KDAGGMVIDMKWNPT---  160 (434)
T ss_dssp             CSSCEEEEEECTT-----SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC--CSGGGSEEEEEECSS---
T ss_pred             CCCcccEEEEcCC-----CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc--CCCCCceEEEEECCC---
Confidence            4457999999984     34566    44433 6999998653        122223332  246788999999976   


Q ss_pred             CceEEEEecCCcEeC
Q psy8253          74 GRPLLAVAGSRAVIR   88 (88)
Q Consensus        74 ~~plLa~aG~~G~Ir   88 (88)
                      +..+||+|+.+|.||
T Consensus       161 ~~~~las~s~Dg~v~  175 (434)
T 2oit_A          161 VPSMVAVCLADGSIA  175 (434)
T ss_dssp             CTTEEEEEETTSCEE
T ss_pred             CCCEEEEEECCCeEE
Confidence            245699999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.72  E-value=0.016  Score=39.23  Aligned_cols=70  Identities=9%  Similarity=0.031  Sum_probs=47.7

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEee-cCCCCceEEEEecCCc
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSM-DLESGRPLLAVAGSRA   85 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~-d~~~~~plLa~aG~~G   85 (88)
                      |..++.+++|+|-.      +++....+.|.+|++...+...... .. ......+.+++|+. +    ..+|++|+.+|
T Consensus       149 ~~~~v~~~~~~~~~------l~~~~~d~~i~i~d~~~~~~~~~~~-~~-~~~~~~i~~i~~~~~~----~~~l~~~~~dg  216 (342)
T 1yfq_A          149 VKNKIFTMDTNSSR------LIVGMNNSQVQWFRLPLCEDDNGTI-EE-SGLKYQIRDVALLPKE----QEGYACSSIDG  216 (342)
T ss_dssp             SCCCEEEEEECSSE------EEEEESTTEEEEEESSCCTTCCCEE-EE-CSCSSCEEEEEECSGG----GCEEEEEETTS
T ss_pred             eCCceEEEEecCCc------EEEEeCCCeEEEEECCcccccccee-ee-cCCCCceeEEEECCCC----CCEEEEEecCC
Confidence            77899999998632      4444444589999998722211111 11 14567899999998 6    35699999999


Q ss_pred             EeC
Q psy8253          86 VIR   88 (88)
Q Consensus        86 ~Ir   88 (88)
                      .|+
T Consensus       217 ~i~  219 (342)
T 1yfq_A          217 RVA  219 (342)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=96.72  E-value=0.011  Score=41.79  Aligned_cols=69  Identities=12%  Similarity=0.137  Sum_probs=46.3

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      +.|..++.+++|+|     +.+++|+.+.+.+.||++.+.   +.+.....    .....++|..+   ++-++++||.+
T Consensus        16 ~~h~~~V~~v~fs~-----dg~~la~g~~~~~~iw~~~~~---~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~d   80 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQ-----DQSCLILSTLKSFEIYNVHPV---AHIMSQEM----RHLSKVRMLHR---TNYVAFVTGVK   80 (355)
T ss_dssp             ---CCCCCEEEECT-----TSSEEEEECSSEEEEEEETTE---EEEEEEEC----SCCCEEEECTT---SSEEEEECSST
T ss_pred             ccCCCceEEEEECC-----CCCEEEEEcCCEEEEEecCCc---ceeeeeec----CCeEEEEEcCC---CCEEEEEECCc
Confidence            67899999999998     245899888888999998753   44433322    14777888765   23445667777


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      +.||
T Consensus        81 ~~v~   84 (355)
T 3vu4_A           81 EVVH   84 (355)
T ss_dssp             TEEE
T ss_pred             cEEE
Confidence            7764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.52  E-value=0.03  Score=38.90  Aligned_cols=68  Identities=13%  Similarity=0.173  Sum_probs=47.3

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      ...+.+++|+|-    ...++++... +.|.|+++...   ++++.+.   ......+++|+.+   ++.++++++.+|.
T Consensus        73 ~~~v~~~~~spd----g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~---~~~~~~~~~~s~d---g~~l~~~~~~~~~  139 (391)
T 1l0q_A           73 GSSPQGVAVSPD----GKQVYVTNMASSTLSVIDTTSN---TVAGTVK---TGKSPLGLALSPD---GKKLYVTNNGDKT  139 (391)
T ss_dssp             SSSEEEEEECTT----SSEEEEEETTTTEEEEEETTTT---EEEEEEE---CSSSEEEEEECTT---SSEEEEEETTTTE
T ss_pred             CCCccceEECCC----CCEEEEEECCCCEEEEEECCCC---eEEEEEe---CCCCcceEEECCC---CCEEEEEeCCCCE
Confidence            348899999883    2345555443 68999998876   5555553   3457899999977   4565678888887


Q ss_pred             eC
Q psy8253          87 IR   88 (88)
Q Consensus        87 Ir   88 (88)
                      |+
T Consensus       140 v~  141 (391)
T 1l0q_A          140 VS  141 (391)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.015  Score=46.05  Aligned_cols=67  Identities=10%  Similarity=0.030  Sum_probs=51.7

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEE--eecCCCCceEEEEe
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAW--SMDLESGRPLLAVA   81 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aW--s~d~~~~~plLa~a   81 (88)
                      ++.|...+.+|+|.       .+.+|+.+.+.|.+++.... .+. ...+   .+.+.++.+++  +.|    ...|++|
T Consensus       222 ~~~h~~~V~svaFs-------g~~LASa~~~tIkLWd~~~~-~~~-~~~~---gh~~~V~~va~~~s~d----~~~La~a  285 (588)
T 2j04_A          222 QNASRRKITDLKIV-------DYKVVLTCPGYVHKIDLKNY-SIS-SLKT---GSLENFHIIPLNHEKE----STILLMS  285 (588)
T ss_dssp             ECCCSSCCCCEEEE-------TTEEEEECSSEEEEEETTTT-EEE-EEEC---SCCSCCCEEEETTCSS----CEEEEEC
T ss_pred             cccccCcEEEEEEE-------CCEEEEEeCCeEEEEECCCC-eEE-EEEc---CCCceEEEEEeeeCCC----CCEEEEE
Confidence            34677899999998       27899999999999998874 111 2222   48899999999  655    3669999


Q ss_pred             cCCcE
Q psy8253          82 GSRAV   86 (88)
Q Consensus        82 G~~G~   86 (88)
                      +++|.
T Consensus       286 ~edG~  290 (588)
T 2j04_A          286 NKTSY  290 (588)
T ss_dssp             SSCEE
T ss_pred             cCCCC
Confidence            99997

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.40  E-value=0.023  Score=40.76  Aligned_cols=69  Identities=13%  Similarity=0.294  Sum_probs=49.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|++       ..+++++.+ .|.|+++.....+...+...  .+...+.+++|  +    ..+|++|+.
T Consensus       210 ~~h~~~v~~l~~~~-------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~--~----~~~l~s~~~  274 (435)
T 1p22_A          210 IHHCEAVLHLRFNN-------GMMVTCSKDRSIAVWDMASPTDITLRRVLV--GHRAAVNVVDF--D----DKYIVSASG  274 (435)
T ss_dssp             CCCCSCEEEEECCT-------TEEEEEETTSCEEEEECSSSSCCEEEEEEC--CCSSCEEEEEE--E----TTEEEEEET
T ss_pred             cCCCCcEEEEEEcC-------CEEEEeeCCCcEEEEeCCCCCCceeeeEec--CCCCcEEEEEe--C----CCEEEEEeC
Confidence            45778888888863       367777765 69999998775554444443  46778889998  2    245888888


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       275 dg~i~  279 (435)
T 1p22_A          275 DRTIK  279 (435)
T ss_dssp             TSEEE
T ss_pred             CCeEE
Confidence            88874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.39  E-value=0.021  Score=40.97  Aligned_cols=66  Identities=8%  Similarity=0.178  Sum_probs=47.0

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++++++|       +.+.+|+.+.+ .|.|++....   +.++.+.  .+...+.+++|  +    ..+|++|+.
T Consensus       130 ~~~~~~v~~~~~-------d~~~l~~g~~dg~i~iwd~~~~---~~~~~~~--~h~~~v~~l~~--~----~~~l~sg~~  191 (435)
T 1p22_A          130 SETSKGVYCLQY-------DDQKIVSGLRDNTIKIWDKNTL---ECKRILT--GHTGSVLCLQY--D----ERVIITGSS  191 (435)
T ss_dssp             CSSCCCEEEEEC-------CSSEEEEEESSSCEEEEESSSC---CEEEEEC--CCSSCEEEEEC--C----SSEEEEEET
T ss_pred             cCCCCcEEEEEE-------CCCEEEEEeCCCeEEEEeCCCC---eEEEEEc--CCCCcEEEEEE--C----CCEEEEEcC
Confidence            456677888887       24567776655 6999998765   4455553  46778999998  2    246899999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       192 dg~i~  196 (435)
T 1p22_A          192 DSTVR  196 (435)
T ss_dssp             TSCEE
T ss_pred             CCeEE
Confidence            98874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.36  E-value=0.04  Score=38.27  Aligned_cols=69  Identities=14%  Similarity=0.055  Sum_probs=47.7

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEe---CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATV---GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtv---G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +...+.+++|+|..    ..++++.   +.+.|.+|++...   +.++.+..   .....+++|+.+   ++.++++++.
T Consensus       198 ~~~~~~~~~~~~~g----~~l~~~~~~~~~~~v~~~d~~~~---~~~~~~~~---~~~~~~~~~s~d---g~~l~~s~~~  264 (391)
T 1l0q_A          198 VEAAPSGIAVNPEG----TKAYVTNVDKYFNTVSMIDTGTN---KITARIPV---GPDPAGIAVTPD---GKKVYVALSF  264 (391)
T ss_dssp             CSSEEEEEEECTTS----SEEEEEEECSSCCEEEEEETTTT---EEEEEEEC---CSSEEEEEECTT---SSEEEEEETT
T ss_pred             cCCCccceEECCCC----CEEEEEecCcCCCcEEEEECCCC---eEEEEEec---CCCccEEEEccC---CCEEEEEcCC
Confidence            45577889998732    3445444   4678999998765   55666643   345788999977   4566678788


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       265 d~~v~  269 (391)
T 1l0q_A          265 XNTVS  269 (391)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            88774

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.23  E-value=0.05  Score=38.90  Aligned_cols=66  Identities=9%  Similarity=0.194  Sum_probs=48.9

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++++++|+       ..++++.+.+ .|.|+++...   +.++.+.  .+...+.+++|.      ...|++|+.
T Consensus       156 ~~h~~~v~~~~~~-------~~~l~s~~~dg~i~vwd~~~~---~~~~~~~--~h~~~v~~~~~~------~~~l~s~s~  217 (445)
T 2ovr_B          156 VGHTGGVWSSQMR-------DNIIISGSTDRTLKVWNAETG---ECIHTLY--GHTSTVRCMHLH------EKRVVSGSR  217 (445)
T ss_dssp             CCCSSCEEEEEEE-------TTEEEEEETTSCEEEEETTTT---EEEEEEC--CCSSCEEEEEEE------TTEEEEEET
T ss_pred             cCCCCCEEEEEec-------CCEEEEEeCCCeEEEEECCcC---cEEEEEC--CCCCcEEEEEec------CCEEEEEeC
Confidence            4688899999997       2477777766 6999999876   5555553  467778888884      234888888


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       218 dg~i~  222 (445)
T 2ovr_B          218 DATLR  222 (445)
T ss_dssp             TSEEE
T ss_pred             CCEEE
Confidence            88774

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.08  E-value=0.061  Score=37.84  Aligned_cols=70  Identities=4%  Similarity=-0.124  Sum_probs=50.0

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .|...+.+++|+|     ...++++.+. +.|.++++...   +.++.+.  .+.....+++|+.+   +..++++++.+
T Consensus       167 ~~~~~v~~~~~~~-----~~~~~~s~~~d~~v~~~d~~~~---~~~~~~~--~~~~~~~~~~~~~~---~~~l~~~~~~~  233 (433)
T 3bws_A          167 KKLGFVETISIPE-----HNELWVSQMQANAVHVFDLKTL---AYKATVD--LTGKWSKILLYDPI---RDLVYCSNWIS  233 (433)
T ss_dssp             TTCCEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTTC---CEEEEEE--CSSSSEEEEEEETT---TTEEEEEETTT
T ss_pred             ccCCceeEEEEcC-----CCEEEEEECCCCEEEEEECCCc---eEEEEEc--CCCCCeeEEEEcCC---CCEEEEEecCC
Confidence            5677899999965     3457777765 58999998765   4445553  35677899999976   45555677678


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.|+
T Consensus       234 ~~i~  237 (433)
T 3bws_A          234 EDIS  237 (433)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            8764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=95.92  E-value=0.042  Score=39.23  Aligned_cols=54  Identities=22%  Similarity=0.289  Sum_probs=39.4

Q ss_pred             CCEEEEeCC--CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253          25 PRIFATVGS--NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        25 ~~~fAtvG~--~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      ...|++.|+  +.|.|+++.....+..+..     ....+.+++|+.|   | .+||+|+.+|++
T Consensus       328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~-----~~~~V~svafspd---G-~~LA~as~~Gv~  383 (393)
T 4gq1_A          328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQ-----LGMPIVDFCWHQD---G-SHLAIATEGSVL  383 (393)
T ss_dssp             TTEEEEEETTTTEEEEEETTCTTCCEEEEE-----CSSCEEEEEECTT---S-SEEEEEESSEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEecC-----CCCcEEEEEEcCC---C-CEEEEEeCCCeE
Confidence            556777775  4799999988754433332     4567999999988   3 459999999874

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=95.90  E-value=0.05  Score=40.61  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=37.2

Q ss_pred             EEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCcee-EEEEeecCCCCceEEEEecCCcEeC
Q psy8253          27 IFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFY-TCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        27 ~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y-~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      ++|+.+.+ .|.|+++...   +.++.+..  +..... .++|+.|    ..+|++|+.||.||
T Consensus       297 ~lASgS~DgTIkIWDl~tG---k~l~tL~g--H~~~vvs~vafSPD----G~~LaSGS~D~TIk  351 (356)
T 2w18_A          297 CAAAILTSGTIAIWDLLLG---QCTALLPP--VSDQHWSFVKWSGT----DSHLLAGQKDGNIF  351 (356)
T ss_dssp             EEEEEETTSCEEEEETTTC---SEEEEECC--C--CCCCEEEECSS----SSEEEEECTTSCEE
T ss_pred             EEEEEcCCCcEEEEECCCC---cEEEEecC--CCCCeEEEEEECCC----CCEEEEEECCCcEE
Confidence            45655544 6999999887   56666642  334444 5899987    35699999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.75  E-value=0.12  Score=36.34  Aligned_cols=69  Identities=10%  Similarity=-0.007  Sum_probs=44.3

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCC---------------CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecC
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGS---------------NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDL   71 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~---------------~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~   71 (88)
                      +...+.+++|+|-.    ..++++..+               +.|.+++....   ++++.+..   .....+++|+.+ 
T Consensus       343 ~~~~~~~~~~s~dg----~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~---~~~~~~~~~s~d-  411 (433)
T 3bws_A          343 VFDKPNTIALSPDG----KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEA---GNQPTGLDVSPD-  411 (433)
T ss_dssp             CSSSEEEEEECTTS----SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEEC---SSSEEEEEECTT-
T ss_pred             CCCCCCeEEEcCCC----CEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEecC---CCCCceEEEcCC-
Confidence            55678889998732    234443332               27999988765   66666643   456899999876 


Q ss_pred             CCCceEEEEecCCcEeC
Q psy8253          72 ESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        72 ~~~~plLa~aG~~G~Ir   88 (88)
                        ++-|+++++.+|.|+
T Consensus       412 --g~~l~~~~~~d~~i~  426 (433)
T 3bws_A          412 --NRYLVISDFLDHQIR  426 (433)
T ss_dssp             --SCEEEEEETTTTEEE
T ss_pred             --CCEEEEEECCCCeEE
Confidence              445444444588874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.50  E-value=0.11  Score=34.83  Aligned_cols=65  Identities=12%  Similarity=0.141  Sum_probs=42.3

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      +....++++|+|-     ...+++. .+.|.+++....   ++++.+..   .....+++|+.|   ++. |++++.+|.
T Consensus       239 ~~~~~~~~~~s~d-----g~~l~~~-~~~v~~~d~~~~---~~~~~~~~---~~~~~~~~~s~d---g~~-l~~~~~~~~  302 (337)
T 1pby_B          239 MDVFYFSTAVNPA-----KTRAFGA-YNVLESFDLEKN---ASIKRVPL---PHSYYSVNVSTD---GST-VWLGGALGD  302 (337)
T ss_dssp             CSSCEEEEEECTT-----SSEEEEE-ESEEEEEETTTT---EEEEEEEC---SSCCCEEEECTT---SCE-EEEESBSSE
T ss_pred             CCCceeeEEECCC-----CCEEEEe-CCeEEEEECCCC---cCcceecC---CCceeeEEECCC---CCE-EEEEcCCCc
Confidence            3345678888872     2233333 789999998664   66666643   456788999876   344 555677776


Q ss_pred             e
Q psy8253          87 I   87 (88)
Q Consensus        87 I   87 (88)
                      |
T Consensus       303 i  303 (337)
T 1pby_B          303 L  303 (337)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.39  E-value=0.15  Score=36.82  Aligned_cols=67  Identities=19%  Similarity=0.201  Sum_probs=44.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC----eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN----RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~----~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      ..|..++.+++|+|-     .+.+|+++.+    .|.++++... ...  +..   .......+++|+.|   |+-|+.+
T Consensus       175 ~~~~~~v~~~~~Spd-----g~~la~~s~~~~~~~i~~~d~~tg-~~~--~l~---~~~~~~~~~~~spd---g~~la~~  240 (415)
T 2hqs_A          175 HRSPQPLMSPAWSPD-----GSKLAYVTFESGRSALVIQTLANG-AVR--QVA---SFPRHNGAPAFSPD---GSKLAFA  240 (415)
T ss_dssp             EEESSCEEEEEECTT-----SSEEEEEECTTSSCEEEEEETTTC-CEE--EEE---CCSSCEEEEEECTT---SSEEEEE
T ss_pred             eCCCCcceeeEEcCC-----CCEEEEEEecCCCcEEEEEECCCC-cEE--Eee---cCCCcccCEEEcCC---CCEEEEE
Confidence            457778999999983     4557777654    7999998765 222  222   23557899999987   4554446


Q ss_pred             ecCCc
Q psy8253          81 AGSRA   85 (88)
Q Consensus        81 aG~~G   85 (88)
                      ++.+|
T Consensus       241 ~~~~g  245 (415)
T 2hqs_A          241 LSKTG  245 (415)
T ss_dssp             ECTTS
T ss_pred             EecCC
Confidence            65544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=95.31  E-value=0.18  Score=33.81  Aligned_cols=71  Identities=7%  Similarity=0.095  Sum_probs=45.2

Q ss_pred             CCeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCCeeEEE--EEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           9 QPLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGSIKLLQ--CYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         9 ~~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~~~~l~--~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      ..+.+++|+|-    ...++++. +.++|.+|++..++.+..+.  .... ........++|+.+   ++-+++++..++
T Consensus       129 ~~~~~~~~s~d----g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pd---g~~l~~~~~~~~  200 (343)
T 1ri6_A          129 DGCHSANISPD----NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT-VEGAGPRHMVFHPN---EQYAYCVNELNS  200 (343)
T ss_dssp             TTBCCCEECTT----SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC-STTCCEEEEEECTT---SSEEEEEETTTT
T ss_pred             CCceEEEECCC----CCEEEEecCCCCEEEEEEecCCCceeeeccccccc-CCCCCcceEEECCC---CCEEEEEeCCCC
Confidence            34666777662    23455555 67899999998766555444  3332 23456778999876   445556665676


Q ss_pred             Ee
Q psy8253          86 VI   87 (88)
Q Consensus        86 ~I   87 (88)
                      .|
T Consensus       201 ~i  202 (343)
T 1ri6_A          201 SV  202 (343)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.25  E-value=0.3  Score=33.44  Aligned_cols=73  Identities=10%  Similarity=0.139  Sum_probs=47.4

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCCeeEEEEEEcCCC-------CCceeEEEEeecCCCCceEE
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGSIKLLQCYADPDI-------EENFYTCAWSMDLESGRPLL   78 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~d~-------~e~~y~~aWs~d~~~~~plL   78 (88)
                      +.....+++|+|-.    ..++.+. +++.|.||++..++.++.+........       ......++|+.|   ++ ++
T Consensus        84 ~~~~p~~~a~spdg----~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd---g~-l~  155 (347)
T 3hfq_A           84 PGTPPAYVAVDEAR----QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD---NR-LA  155 (347)
T ss_dssp             ESCCCSEEEEETTT----TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT---SC-EE
T ss_pred             CCCCCEEEEECCCC----CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC---Cc-EE
Confidence            44556677777622    3344444 457899999988877777776644221       234778999877   44 67


Q ss_pred             EEecCCcEe
Q psy8253          79 AVAGSRAVI   87 (88)
Q Consensus        79 a~aG~~G~I   87 (88)
                      +++..++.|
T Consensus       156 v~~~~~~~v  164 (347)
T 3hfq_A          156 VIDLGSDKV  164 (347)
T ss_dssp             EEETTTTEE
T ss_pred             EEeCCCCEE
Confidence            777666655

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=95.18  E-value=0.17  Score=33.86  Aligned_cols=71  Identities=10%  Similarity=0.025  Sum_probs=44.9

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCC-CCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDG-GSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~-~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      +..++.+++|+|-.    ..++++..+ +.|.+|++..+ +.++.+..+..   ......++|+.+   ++-+++++..+
T Consensus        36 ~~~~~~~~~~spdg----~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~d---g~~l~~~~~~~  105 (343)
T 1ri6_A           36 VPGQVQPMVVSPDK----RYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL---PGSLTHISTDHQ---GQFVFVGSYNA  105 (343)
T ss_dssp             CSSCCCCEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---SSCCSEEEECTT---SSEEEEEETTT
T ss_pred             cCCCCceEEECCCC----CEEEEeecCCCeEEEEEecCCCCceeecccccc---CCCCcEEEEcCC---CCEEEEEecCC
Confidence            44566677777622    334444444 78999999853 45677777743   237788999876   44545555557


Q ss_pred             cEe
Q psy8253          85 AVI   87 (88)
Q Consensus        85 G~I   87 (88)
                      |.|
T Consensus       106 ~~i  108 (343)
T 1ri6_A          106 GNV  108 (343)
T ss_dssp             TEE
T ss_pred             CeE
Confidence            755

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=95.10  E-value=0.52  Score=32.97  Aligned_cols=60  Identities=13%  Similarity=0.167  Sum_probs=38.7

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD   70 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d   70 (88)
                      ++....+++|+|-.    ..++++- |.++|.+|++..++.++.+..+.-+.+......++|+.|
T Consensus       143 ~~~~~~~~~~spdG----~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd  203 (365)
T 1jof_A          143 ENTGIHGMVFDPTE----TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT  203 (365)
T ss_dssp             TTCCEEEEEECTTS----SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT
T ss_pred             CCCcceEEEECCCC----CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC
Confidence            45577888888732    2344333 568999999985445655555532223556788999877

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=94.94  E-value=0.54  Score=32.10  Aligned_cols=70  Identities=14%  Similarity=0.143  Sum_probs=45.4

Q ss_pred             CCeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253           9 QPLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus         9 ~~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      ..+.+++|+|-.    . +|++. ++++|.+|++..++.+..+..+.. ........++|+.|   |+-+++++..++.|
T Consensus       141 ~~~~~~~~spdg----~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~g~~p~~~~~spd---g~~l~v~~~~~~~v  211 (347)
T 3hfq_A          141 SHIHYTDLTPDN----R-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTM-EAGFGPRHLVFSPD---GQYAFLAGELSSQI  211 (347)
T ss_dssp             CCEEEEEECTTS----C-EEEEETTTTEEEEEEECTTSCEEEEEEEEC-CTTCCEEEEEECTT---SSEEEEEETTTTEE
T ss_pred             CCceEEEECCCC----c-EEEEeCCCCEEEEEEECCCCcEEEeeeEEc-CCCCCCceEEECCC---CCEEEEEeCCCCEE
Confidence            357788888732    3 66665 456899999997666666655543 23445677899876   45555555555554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=94.84  E-value=0.074  Score=34.56  Aligned_cols=64  Identities=8%  Similarity=-0.033  Sum_probs=43.7

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCC-CCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPD-GGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~-~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .|...+.+++|+|     +.+.+|+.+.+.|.+++... ....   +.. .......+.+++|+.|   ++ +|++++
T Consensus        39 ~~~~~v~~~~~sp-----dg~~l~~~~~~~i~~~d~~~~~~~~---~~~-~~~~~~~~~~~~~spd---g~-~l~~~~  103 (297)
T 2ojh_A           39 QTPELFEAPNWSP-----DGKYLLLNSEGLLYRLSLAGDPSPE---KVD-TGFATICNNDHGISPD---GA-LYAISD  103 (297)
T ss_dssp             EESSCCEEEEECT-----TSSEEEEEETTEEEEEESSSCCSCE---ECC-CTTCCCBCSCCEECTT---SS-EEEEEE
T ss_pred             cCCcceEeeEECC-----CCCEEEEEcCCeEEEEeCCCCCCce---Eec-cccccccccceEECCC---CC-EEEEEE
Confidence            4677899999988     34578888888999999877 4322   222 1123467888999987   33 455555

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=94.32  E-value=0.73  Score=31.68  Aligned_cols=69  Identities=14%  Similarity=0.139  Sum_probs=43.7

Q ss_pred             CCeEEEEEecCCCCCCCCEEEEeCC--CeEEEEEcCC-CCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           9 QPLFGAQFNHLLKDDQPRIFATVGS--NRVSIYECPD-GGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         9 ~~~y~v~Fnp~~~~~~~~~fAtvG~--~~v~Vy~~~~-~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      ....+++|+|-.    ..++++..+  +.|.||++.+ ++.++.+..+.-   ......++|+.|   ++-|+++...++
T Consensus       259 ~~~~~i~~spdg----~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spd---g~~l~~~~~~~~  328 (361)
T 3scy_A          259 QGSGDIHLSPDG----KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPN---GKYLLVACRDTN  328 (361)
T ss_dssp             CCEEEEEECTTS----SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTT---SCEEEEEETTTT
T ss_pred             CCcccEEECCCC----CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCC---CCEEEEEECCCC
Confidence            345688887732    345555544  7899999984 456777776643   455678999877   445444443555


Q ss_pred             Ee
Q psy8253          86 VI   87 (88)
Q Consensus        86 ~I   87 (88)
                      .|
T Consensus       329 ~v  330 (361)
T 3scy_A          329 VI  330 (361)
T ss_dssp             EE
T ss_pred             CE
Confidence            54

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=94.25  E-value=0.24  Score=36.88  Aligned_cols=77  Identities=9%  Similarity=-0.016  Sum_probs=42.6

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcC-CCCCceeEEEEeecCC--------CCce
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADP-DIEENFYTCAWSMDLE--------SGRP   76 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~-d~~e~~y~~aWs~d~~--------~~~p   76 (88)
                      |...+..++|+|-.  +....+|+.+.+ .|.|+++...   +.++.+... ..-..+++++++.+..        .+..
T Consensus       177 ~~~~v~~l~fs~~~--g~~~~LaSgS~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w  251 (356)
T 2w18_A          177 MPPEETILTFAEVQ--GMQEALLGTTIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE  251 (356)
T ss_dssp             CCCSSCEEEEEEEE--TSTTEEEEEETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred             CCCceeeEEeeccC--CCCceEEEecCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence            44455566666533  356788888876 5999999887   555655421 2234677778887621        0112


Q ss_pred             EEEEecCCcEeC
Q psy8253          77 LLAVAGSRAVIR   88 (88)
Q Consensus        77 lLa~aG~~G~Ir   88 (88)
                      .|++|+.++.||
T Consensus       252 ~laSGs~D~tIk  263 (356)
T 2w18_A          252 SESLRSPVFQLI  263 (356)
T ss_dssp             ------CCEEEE
T ss_pred             eeeccCCCcEEE
Confidence            357777888775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=93.98  E-value=0.33  Score=32.59  Aligned_cols=64  Identities=20%  Similarity=0.342  Sum_probs=41.0

Q ss_pred             CCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253           9 QPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus         9 ~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      ...++++|+|-.    .+.+++. .++|.+|++...   ++++.+.   .....+.++|+.|   ++. |++++.+|.|
T Consensus       255 ~~~~~~~~sp~d----g~~l~~~-~~~v~~~d~~~~---~~~~~~~---~~~~~~~~~~s~d---g~~-l~~~~~~~~v  318 (349)
T 1jmx_B          255 ELYFTGLRSPKD----PNQIYGV-LNRLAKYDLKQR---KLIKAAN---LDHTYYCVAFDKK---GDK-LYLGGTFNDL  318 (349)
T ss_dssp             SCEEEEEECSSC----TTEEEEE-ESEEEEEETTTT---EEEEEEE---CSSCCCEEEECSS---SSC-EEEESBSSEE
T ss_pred             CcceeeEecCCC----CCEEEEE-cCeEEEEECccC---eEEEEEc---CCCCccceEECCC---CCE-EEEecCCCeE
Confidence            356677777621    2234444 789999998765   6666664   2345778999987   445 4456767766

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.20  E-value=1.2  Score=29.79  Aligned_cols=71  Identities=10%  Similarity=-0.033  Sum_probs=44.2

Q ss_pred             CCeEEEEEecCCCCCCCCEEEEeC-CCe-EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253           9 QPLFGAQFNHLLKDDQPRIFATVG-SNR-VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus         9 ~~~y~v~Fnp~~~~~~~~~fAtvG-~~~-v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      ....+++|+|-.    ..++++.. .+. +.+|++..++.+.-.. ...-........++|+.|   ++-+++++..++.
T Consensus       128 ~~~~~~~~spdg----~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spd---g~~l~v~~~~~~~  199 (331)
T 3u4y_A          128 YDAVGIAISPNG----NGLILIDRSSANTVRRFKIDADGVLFDTG-QEFISGGTRPFNITFTPD---GNFAFVANLIGNS  199 (331)
T ss_dssp             TTEEEEEECTTS----SCEEEEEETTTTEEEEEEECTTCCEEEEE-EEEECSSSSEEEEEECTT---SSEEEEEETTTTE
T ss_pred             CCccceEECCCC----CEEEEEecCCCceEEEEEECCCCcEeecC-CccccCCCCccceEECCC---CCEEEEEeCCCCe
Confidence            345788888732    34666544 467 9999999876533222 111134556788999877   4555666666666


Q ss_pred             e
Q psy8253          87 I   87 (88)
Q Consensus        87 I   87 (88)
                      |
T Consensus       200 v  200 (331)
T 3u4y_A          200 I  200 (331)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.04  E-value=0.59  Score=31.43  Aligned_cols=66  Identities=15%  Similarity=0.106  Sum_probs=40.6

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC----eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN----RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~----~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      .+..+..+++|+|-    ...++ +....    .|.+++....   ++++.+..   ......++|+.|   ++.++++.
T Consensus        81 ~~~~~~~~~~~s~d----g~~l~-~~~~~~~~~~i~v~d~~~~---~~~~~~~~---~~~~~~~~~spd---g~~l~~~~  146 (331)
T 3u4y_A           81 EGQSSMADVDITPD----DQFAV-TVTGLNHPFNMQSYSFLKN---KFISTIPI---PYDAVGIAISPN---GNGLILID  146 (331)
T ss_dssp             ECSSCCCCEEECTT----SSEEE-ECCCSSSSCEEEEEETTTT---EEEEEEEC---CTTEEEEEECTT---SSCEEEEE
T ss_pred             cCCCCccceEECCC----CCEEE-EecCCCCcccEEEEECCCC---CeEEEEEC---CCCccceEECCC---CCEEEEEe
Confidence            34456666888762    23445 44444    7999998765   56666643   445689999987   44555555


Q ss_pred             cCCc
Q psy8253          82 GSRA   85 (88)
Q Consensus        82 G~~G   85 (88)
                      ..++
T Consensus       147 ~~~~  150 (331)
T 3u4y_A          147 RSSA  150 (331)
T ss_dssp             ETTT
T ss_pred             cCCC
Confidence            4433

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=92.24  E-value=0.37  Score=31.12  Aligned_cols=67  Identities=16%  Similarity=0.092  Sum_probs=38.4

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCC------------CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGS------------NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLES   73 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~------------~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~   73 (88)
                      .|...+..++|+|-     ...+|+.+.            .++.++++... .+..+....  .+...+..++|+.|   
T Consensus       214 ~~~~~~~~~~~s~d-----g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~~~--~~~~~~~~~~~spd---  282 (297)
T 2ojh_A          214 DSAYGDWFPHPSPS-----GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG-NVETLFDLF--GGQGTMNSPNWSPD---  282 (297)
T ss_dssp             CCSEEEEEEEECTT-----SSEEEEEEEETTCCSCCSSEEEEEEEEETTSC-SCEEEEEEE--ESTTTSCSCCBCTT---
T ss_pred             cCCcccCCeEECCC-----CCEEEEEEcCCCCCcccccCceEEEEEecCCC-CceeeeccC--CCCcccccceECCC---
Confidence            44556777888762     344555544            35777777654 333333332  34567888999976   


Q ss_pred             CceEEEEecC
Q psy8253          74 GRPLLAVAGS   83 (88)
Q Consensus        74 ~~plLa~aG~   83 (88)
                      ++-|+.++..
T Consensus       283 g~~l~~~~~~  292 (297)
T 2ojh_A          283 GDEFAYVRYF  292 (297)
T ss_dssp             SSEEEEEEEC
T ss_pred             CCEEEEEEec
Confidence            4554444433

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=91.01  E-value=2.7  Score=28.78  Aligned_cols=70  Identities=7%  Similarity=0.078  Sum_probs=42.2

Q ss_pred             CeEEEEEecCCCCCCCCEEEEe-CCCeEEEEEcCCCCC------eeEE---EEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253          10 PLFGAQFNHLLKDDQPRIFATV-GSNRVSIYECPDGGS------IKLL---QCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus        10 ~~y~v~Fnp~~~~~~~~~fAtv-G~~~v~Vy~~~~~~~------~~~l---~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      ...+++|+|-.    ..++++. |.++|.||++..++.      +...   ..... ........++|+.|   ++-+++
T Consensus       156 ~~~~~~~spdg----~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~spd---g~~l~v  227 (361)
T 3scy_A          156 HLHCVRITPDG----KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGSGPRHLIFNSD---GKFAYL  227 (361)
T ss_dssp             CEEEEEECTTS----SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTCCEEEEEECTT---SSEEEE
T ss_pred             cceEEEECCCC----CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec-CCCCCCeEEEEcCC---CCEEEE
Confidence            45788998732    3354444 567899999987653      4333   22222 34556778999887   444444


Q ss_pred             EecCCcEe
Q psy8253          80 VAGSRAVI   87 (88)
Q Consensus        80 ~aG~~G~I   87 (88)
                      +...++.|
T Consensus       228 ~~~~~~~v  235 (361)
T 3scy_A          228 INEIGGTV  235 (361)
T ss_dssp             EETTTCEE
T ss_pred             EcCCCCeE
Confidence            44355554

>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}

Probab=90.91  E-value=0.7  Score=27.05  Aligned_cols=32  Identities=28%  Similarity=0.500  Sum_probs=28.0

Q ss_pred             CCCEEEEeCCCeEEEEEcCCCCC-eeEEEEEEc
Q psy8253          24 QPRIFATVGSNRVSIYECPDGGS-IKLLQCYAD   55 (88)
Q Consensus        24 ~~~~fAtvG~~~v~Vy~~~~~~~-~~~l~~~~d   55 (88)
                      ....||++-++.|.||+..++.+ +++++.+-+
T Consensus        28 e~nhFgv~e~g~iKIykyde~tNeI~LkKE~~~   60 (72)
T 3kvp_A           28 EHNHFGVMEDGYIKIYEYNESRNEVKLKKEYAD   60 (72)
T ss_dssp             STTEEEEEETTEEEEEEEETTTTEEEEEEEEEC
T ss_pred             cCCEEEEEeCCEEEEEEeCCCCCeEEEEEeecC
Confidence            46789999999999999999876 889988765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=90.73  E-value=2.2  Score=30.63  Aligned_cols=64  Identities=17%  Similarity=0.161  Sum_probs=37.8

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEE-EeC---CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFA-TVG---SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fA-tvG---~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      ..|...+.+++|+|-     .+.+| +.+   ..+|.++++... .+   +..  ........+++|+.|   ++- |++
T Consensus       219 ~~~~~~~~~~~~spd-----g~~la~~~~~~g~~~i~~~d~~~~-~~---~~l--~~~~~~~~~~~~spd---g~~-l~~  283 (415)
T 2hqs_A          219 ASFPRHNGAPAFSPD-----GSKLAFALSKTGSLNLYVMDLASG-QI---RQV--TDGRSNNTEPTWFPD---SQN-LAF  283 (415)
T ss_dssp             ECCSSCEEEEEECTT-----SSEEEEEECTTSSCEEEEEETTTC-CE---EEC--CCCSSCEEEEEECTT---SSE-EEE
T ss_pred             ecCCCcccCEEEcCC-----CCEEEEEEecCCCceEEEEECCCC-CE---EeC--cCCCCcccceEECCC---CCE-EEE
Confidence            346668899999883     33344 432   235777777654 22   222  134567889999987   445 444


Q ss_pred             ecC
Q psy8253          81 AGS   83 (88)
Q Consensus        81 aG~   83 (88)
                      ++.
T Consensus       284 ~s~  286 (415)
T 2hqs_A          284 TSD  286 (415)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=90.63  E-value=2.7  Score=28.16  Aligned_cols=71  Identities=15%  Similarity=0.184  Sum_probs=44.1

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCC--CCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPD--IEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d--~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      ++....+++|+|-    ...++++..++.+.+++....   ++++.+...+  +......++|+.+   ++-++++...+
T Consensus       183 ~~~~~~~~~~s~d----g~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~~~~~  252 (353)
T 3vgz_A          183 TGKMSTGLALDSE----GKRLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTA---RQRAFITDSKA  252 (353)
T ss_dssp             CCTTCCCCEEETT----TTEEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETT---TTEEEEEESSS
T ss_pred             CCCccceEEECCC----CCEEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCC---CCEEEEEeCCC
Confidence            3444667777762    345677777778999987765   5666554322  3445678999987   44545554444


Q ss_pred             cEe
Q psy8253          85 AVI   87 (88)
Q Consensus        85 G~I   87 (88)
                      +.|
T Consensus       253 ~~v  255 (353)
T 3vgz_A          253 AEV  255 (353)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=89.34  E-value=3.5  Score=27.57  Aligned_cols=66  Identities=12%  Similarity=0.184  Sum_probs=41.2

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      ...+.+++|+|-.    ..+|++..+ +.|.+++....   ++++.+.-...    ..++|+.|   ++.++++...+|.
T Consensus       230 ~~~~~~~~~s~dg----~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~----~~~~~s~d---g~~l~v~~~~~~~  295 (353)
T 3vgz_A          230 EHFFINISLDTAR----QRAFITDSKAAEVLVVDTRNG---NILAKVAAPES----LAVLFNPA---RNEAYVTHRQAGK  295 (353)
T ss_dssp             CCCEEEEEEETTT----TEEEEEESSSSEEEEEETTTC---CEEEEEECSSC----CCEEEETT---TTEEEEEETTTTE
T ss_pred             CcccceEEECCCC----CEEEEEeCCCCEEEEEECCCC---cEEEEEEcCCC----ceEEECCC---CCEEEEEECCCCe
Confidence            4456778888732    345555544 78999998765   45555543221    56888876   4555666666666


Q ss_pred             e
Q psy8253          87 I   87 (88)
Q Consensus        87 I   87 (88)
                      |
T Consensus       296 v  296 (353)
T 3vgz_A          296 V  296 (353)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=89.21  E-value=1.7  Score=32.22  Aligned_cols=61  Identities=15%  Similarity=0.155  Sum_probs=40.2

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSR   84 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~   84 (88)
                      .|..+++++++.+-      . ||++. .+.+.|+++......   +      ..+.+-+++||.+.      +++|..+
T Consensus       124 ~~~~~v~~i~~~~p------~-~av~~~dG~L~v~dl~~~~~~---~------~~~~Vs~v~WSpkG------~~vg~~d  181 (388)
T 1xip_A          124 SFEKPVFQLKNVNN------T-LVILNSVNDLSALDLRTKSTK---Q------LAQNVTSFDVTNSQ------LAVLLKD  181 (388)
T ss_dssp             ECSSCEEEEEECSS------E-EEEEETTSEEEEEETTTCCEE---E------EEESEEEEEECSSE------EEEEETT
T ss_pred             eeecceeeEEecCC------C-EEEEECCCCEEEEEccCCccc---c------ccCCceEEEEcCCc------eEEEEcC
Confidence            45567777765421      2 66664 457999999865322   2      23468899999882      6778888


Q ss_pred             cEeC
Q psy8253          85 AVIR   88 (88)
Q Consensus        85 G~Ir   88 (88)
                      |.|+
T Consensus       182 g~i~  185 (388)
T 1xip_A          182 RSFQ  185 (388)
T ss_dssp             SCEE
T ss_pred             CcEE
Confidence            8764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=88.28  E-value=1.4  Score=33.18  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=19.6

Q ss_pred             CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec
Q psy8253          34 NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD   70 (88)
Q Consensus        34 ~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d   70 (88)
                      .+|.++++...   +..+......++..+..++|+.|
T Consensus       235 ~~l~~~d~~~~---~~~~~~~~~~~~~~~~~~~~spd  268 (706)
T 2z3z_A          235 VTVGIYHLATG---KTVYLQTGEPKEKFLTNLSWSPD  268 (706)
T ss_dssp             EEEEEEETTTT---EEEECCCCSCTTCEEEEEEECTT
T ss_pred             eEEEEEECCCC---ceEeeccCCCCceeEeeEEEECC
Confidence            35667766543   22222222234566789999987

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=88.22  E-value=2.5  Score=28.15  Aligned_cols=57  Identities=12%  Similarity=0.137  Sum_probs=36.5

Q ss_pred             CCCEEEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253          24 QPRIFATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        24 ~~~~fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      ...+|++.+ .+.|.+++....   ++++.+.-+. ......++|+.|   ++-++++++.++.|
T Consensus        10 ~~~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~-~~~~~~~~~s~d---g~~~~v~~~~~~~i   67 (349)
T 1jmx_B           10 GHEYMIVTNYPNNLHVVDVASD---TVYKSCVMPD-KFGPGTAMMAPD---NRTAYVLNNHYGDI   67 (349)
T ss_dssp             TCEEEEEEETTTEEEEEETTTT---EEEEEEECSS-CCSSCEEEECTT---SSEEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCeEEEEECCCC---cEEEEEecCC-CCCCceeEECCC---CCEEEEEeCCCCcE
Confidence            456677765 457999998765   6677664321 114678899876   45556666666665

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=87.69  E-value=2.4  Score=31.65  Aligned_cols=68  Identities=13%  Similarity=0.183  Sum_probs=39.9

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCC---------CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEE
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGS---------NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLL   78 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~---------~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plL   78 (88)
                      ...+.+++|+|-     .+.+|.++.         ..|.++++..++.+..++.... ......+.++|+.|   |+ ++
T Consensus       187 ~~~~~~~~~SpD-----G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~spd---g~-l~  256 (662)
T 3azo_A          187 HRFVTGPRLSPD-----GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAPD---GS-LI  256 (662)
T ss_dssp             SSEECCCEECTT-----SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECTT---SC-EE
T ss_pred             CCcccCceECCC-----CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC-CCCceEcceEECCC---Ce-EE
Confidence            345566677662     344554442         3688888774443322222222 23577899999987   45 77


Q ss_pred             EEecCCc
Q psy8253          79 AVAGSRA   85 (88)
Q Consensus        79 a~aG~~G   85 (88)
                      +++..+|
T Consensus       257 ~~~~~~~  263 (662)
T 3azo_A          257 VATDRTG  263 (662)
T ss_dssp             EEECTTS
T ss_pred             EEECCCC
Confidence            8777766

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=87.22  E-value=7.3  Score=29.31  Aligned_cols=74  Identities=9%  Similarity=-0.033  Sum_probs=44.5

Q ss_pred             CCCCeEEEEEecCCCCCCCCEEEEe--CCCeEEEEEcCCCCCeeEEEEEEcC----C-----CCCceeEEEEeecCCCCc
Q psy8253           7 HGQPLFGAQFNHLLKDDQPRIFATV--GSNRVSIYECPDGGSIKLLQCYADP----D-----IEENFYTCAWSMDLESGR   75 (88)
Q Consensus         7 h~~~~y~v~Fnp~~~~~~~~~fAtv--G~~~v~Vy~~~~~~~~~~l~~~~d~----d-----~~e~~y~~aWs~d~~~~~   75 (88)
                      ++....+++|+||-.. +.+.+++.  ..+.|.|++....   ++++.+.-.    +     ++.....++++.+   +.
T Consensus       220 ~g~~p~~va~sp~~~~-dg~~l~v~~~~~~~v~v~D~~t~---~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~---~~  292 (543)
T 1nir_A          220 IGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE---HP  292 (543)
T ss_dssp             CCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEETTTC---CEEEEEECCEECSSSCCEESCCCEEEEEECSS---SS
T ss_pred             cCCCcceEEeCCCcCC-CCCEEEEEEccCCeEEEEecccc---ccceeecccCcccCccccccCCceEEEEECCC---CC
Confidence            4556789999997542 23334433  3678999987664   455544321    1     1225777888765   34


Q ss_pred             eEEEEecCCcEe
Q psy8253          76 PLLAVAGSRAVI   87 (88)
Q Consensus        76 plLa~aG~~G~I   87 (88)
                      .++++...+|.|
T Consensus       293 ~~~vs~~~~g~i  304 (543)
T 1nir_A          293 EFIVNVKETGKV  304 (543)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEEECCCCeE
Confidence            556666666665

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=86.31  E-value=2  Score=32.44  Aligned_cols=34  Identities=6%  Similarity=0.074  Sum_probs=26.3

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDG   44 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~   44 (88)
                      .|...+..++|+|     +.+.+|++..+.|.++++...
T Consensus       149 ~~~~~~~~~~~SP-----DG~~la~~~~~~i~~~d~~~g  182 (741)
T 2ecf_A          149 HGEGFATDAKLSP-----KGGFVSFIRGRNLWVIDLASG  182 (741)
T ss_dssp             CSSSCEEEEEECT-----TSSEEEEEETTEEEEEETTTT
T ss_pred             cCCcccccccCCC-----CCCEEEEEeCCcEEEEecCCC
Confidence            4566789999998     245688888888999988764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=84.69  E-value=1.4  Score=32.66  Aligned_cols=64  Identities=13%  Similarity=0.107  Sum_probs=38.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeC--CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVG--SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG--~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      .+.+..++|+++|+|-     .+.+|+++  ++.+.||.+. .+  +..+.- . .+.....+++||.|     .+|+++
T Consensus        17 ~~~~~~~~~~~~~~~D-----G~~la~~s~~~g~~~lw~~~-~g--~~~~lt-~-~~~~~~~~~~~spd-----~~l~~~   81 (582)
T 3o4h_A           17 ERLIAVEKYSLQGVVD-----GDKLLVVGFSEGSVNAYLYD-GG--ETVKLN-R-EPINSVLDPHYGVG-----RVILVR   81 (582)
T ss_dssp             HHHHHSCEEEEEEEET-----TTEEEEEEEETTEEEEEEEE-TT--EEEECC-S-SCCSEECEECTTCS-----EEEEEE
T ss_pred             HHHhccchheeecCCC-----CCeEEEEEccCCceeEEEEc-CC--CcEeee-c-ccccccccccCCCC-----eEEEEe
Confidence            3455779999999983     34566655  5678899973 32  222221 1 22346888999854     345544


Q ss_pred             c
Q psy8253          82 G   82 (88)
Q Consensus        82 G   82 (88)
                      .
T Consensus        82 ~   82 (582)
T 3o4h_A           82 D   82 (582)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=84.29  E-value=4.4  Score=26.71  Aligned_cols=55  Identities=7%  Similarity=0.021  Sum_probs=34.3

Q ss_pred             EEEEe-CCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEe
Q psy8253          27 IFATV-GSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVI   87 (88)
Q Consensus        27 ~fAtv-G~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~I   87 (88)
                      ++++. +.+.|.+++....   ++++.+..+...-....++|+.|   ++.++++++.++.|
T Consensus         3 ~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~s~d---g~~l~v~~~~~~~v   58 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPG---GRIAYATVNKSESL   58 (337)
T ss_dssp             EEEEEETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTT---SSEEEEEETTTTEE
T ss_pred             EEEEcCCCCeEEEEECCCC---cEEEEEEcCCCCCCccceEEcCC---CCEEEEEeCCCCeE
Confidence            34444 4568999998765   67777753221103667889876   45556666666665

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=83.25  E-value=6.9  Score=28.02  Aligned_cols=55  Identities=15%  Similarity=0.164  Sum_probs=36.2

Q ss_pred             CCCEEEEeC----------CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec-CCcEe
Q psy8253          24 QPRIFATVG----------SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG-SRAVI   87 (88)
Q Consensus        24 ~~~~fAtvG----------~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG-~~G~I   87 (88)
                      ...+|.+..          ++.|.|++....   ++++.+.   ....-+.++|+.|   |+++|.++. .++.|
T Consensus       278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---~vv~~i~---~g~~p~~i~~s~D---g~~~l~v~~~~~~~V  343 (373)
T 2mad_H          278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQIS---LGHDVDAISVAQD---GGPDLYALSAGTEVL  343 (373)
T ss_pred             CCEEEEEeccCCcccccCCCCeEEEEECCCC---EEEEEEE---CCCCcCeEEECCC---CCeEEEEEcCCCCeE
Confidence            355666653          457888888765   7777773   3446788999887   565566654 45554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=83.01  E-value=4.6  Score=32.43  Aligned_cols=64  Identities=11%  Similarity=0.038  Sum_probs=40.8

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      .|...+..++|+|-     .+.+|+.+.+ .|.++++...   ++.+...  .+...++.++||.|   |+- |++++.
T Consensus       376 ~~~~~~~~~~~SpD-----G~~la~~~~~~~v~~~d~~tg---~~~~~~~--~~~~~v~~~~~SpD---G~~-la~~~~  440 (1045)
T 1k32_A          376 ENLGNVFAMGVDRN-----GKFAVVANDRFEIMTVDLETG---KPTVIER--SREAMITDFTISDN---SRF-IAYGFP  440 (1045)
T ss_dssp             CCCCSEEEEEECTT-----SSEEEEEETTSEEEEEETTTC---CEEEEEE--CSSSCCCCEEECTT---SCE-EEEEEE
T ss_pred             CCccceeeeEECCC-----CCEEEEECCCCeEEEEECCCC---ceEEecc--CCCCCccceEECCC---CCe-EEEEec
Confidence            45678889999873     3456665554 7899988765   2233222  25566789999987   444 555443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=82.49  E-value=4  Score=30.83  Aligned_cols=32  Identities=13%  Similarity=0.160  Sum_probs=21.9

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCC--C-----eEEEEEcCCC
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGS--N-----RVSIYECPDG   44 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~--~-----~v~Vy~~~~~   44 (88)
                      ..++.+++|+|-     .+.+|+++.  +     .|.+++....
T Consensus        36 ~~~~~~~~~Spd-----G~~la~~~~~d~~~~~~~i~~~d~~~g   74 (741)
T 2ecf_A           36 GPTLMKPKVAPD-----GSRVTFLRGKDSDRNQLDLWSYDIGSG   74 (741)
T ss_dssp             CCCCEEEEECTT-----SSEEEEEECCSSCTTEEEEEEEETTTC
T ss_pred             CCCCCCceEecC-----CCEEEEEeccCCCCcccEEEEEECCCC
Confidence            457889999883     455676664  3     5777777654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=81.65  E-value=6.3  Score=29.61  Aligned_cols=72  Identities=13%  Similarity=0.143  Sum_probs=37.9

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC------eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEee--cCCCCceE
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN------RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSM--DLESGRPL   77 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~------~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~--d~~~~~pl   77 (88)
                      .|...+..++|+|-     .+.+|+.+.+      .|.+++......++.+..-.+....+....++|+.  |   |+ +
T Consensus       255 ~~~~~~~~~~~spd-----g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~d---g~-~  325 (706)
T 2z3z_A          255 PKEKFLTNLSWSPD-----ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSN---NQ-F  325 (706)
T ss_dssp             CTTCEEEEEEECTT-----SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCS---SE-E
T ss_pred             CCceeEeeEEEECC-----CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCC---CE-E
Confidence            35566788999883     3344544332      45555554432333333322211112245688987  5   33 6


Q ss_pred             EEEecCCcE
Q psy8253          78 LAVAGSRAV   86 (88)
Q Consensus        78 La~aG~~G~   86 (88)
                      |+++..+|.
T Consensus       326 l~~~~~~g~  334 (706)
T 2z3z_A          326 IWQSRRDGW  334 (706)
T ss_dssp             EEEECTTSS
T ss_pred             EEEEccCCc
Confidence            777776664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=81.04  E-value=5.8  Score=31.85  Aligned_cols=65  Identities=15%  Similarity=0.142  Sum_probs=38.9

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCC-----C--eEEEEEcCCCCCeeEEEEEEcCCCCCce-------eEEEEeec
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGS-----N--RVSIYECPDGGSIKLLQCYADPDIEENF-------YTCAWSMD   70 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~-----~--~v~Vy~~~~~~~~~~l~~~~d~d~~e~~-------y~~aWs~d   70 (88)
                      ..|...+.+++|+|-     .+.+|+++.     +  .|.+++....   + ++...  .+....       ..++||.|
T Consensus        49 t~~~~~v~~~~~SPD-----G~~la~~s~~~~~~~~~~i~~~d~~~g---~-~~~lt--~~~~~~~~~~~~~~~~~~SpD  117 (1045)
T 1k32_A           49 VSNLGVINNARFFPD-----GRKIAIRVMRGSSLNTADLYFYNGENG---E-IKRIT--YFSGKSTGRRMFTDVAGFDPD  117 (1045)
T ss_dssp             ECSSSEEEEEEECTT-----SSEEEEEEEESTTCCEEEEEEEETTTT---E-EEECC--CCCEEEETTEECSEEEEECTT
T ss_pred             eeCCCcccCeEECCC-----CCEEEEEEeeccCCCCCeEEEEECCCC---C-eEEcc--cCCCcccccccccccccCCCC
Confidence            357778999999983     445666532     3  4555555432   2 22222  234445       89999987


Q ss_pred             CCCCceEEEEecCC
Q psy8253          71 LESGRPLLAVAGSR   84 (88)
Q Consensus        71 ~~~~~plLa~aG~~   84 (88)
                         |+ +|++++.+
T Consensus       118 ---g~-ll~~~~~~  127 (1045)
T 1k32_A          118 ---GN-LIISTDAM  127 (1045)
T ss_dssp             ---CC-EEEEECTT
T ss_pred             ---CE-EEEEECCc
Confidence               34 67777643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=80.31  E-value=14  Score=27.77  Aligned_cols=52  Identities=6%  Similarity=-0.058  Sum_probs=34.9

Q ss_pred             CeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEee
Q psy8253          10 PLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSM   69 (88)
Q Consensus        10 ~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~   69 (88)
                      .+++++|+|-    ...++++-.++.|.+|++... ..++++.+.   ....-..++++.
T Consensus       180 ~~~~v~~spd----g~~l~v~~~d~~V~v~D~~~~-t~~~~~~i~---~g~~p~~va~sp  231 (543)
T 1nir_A          180 AVHISRMSAS----GRYLLVIGRDARIDMIDLWAK-EPTKVAEIK---IGIEARSVESSK  231 (543)
T ss_dssp             TEEEEEECTT----SCEEEEEETTSEEEEEETTSS-SCEEEEEEE---CCSEEEEEEECC
T ss_pred             ccceEEECCC----CCEEEEECCCCeEEEEECcCC-CCcEEEEEe---cCCCcceEEeCC
Confidence            4789999982    245565556678999999321 236666664   355677888886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.63
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	98.58
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.39
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.32
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.29
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	98.23
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.18
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.1
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.1
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.06
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.83
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.73
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.66
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	97.65
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.59
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.54
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.53
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.53
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.51
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.41
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.37
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.33
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	97.15
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.12
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.08
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.05
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	96.79
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.56
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	96.38
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.19
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	96.16
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.06
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.3
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.2
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.78
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	94.55
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	93.81
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	90.1
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	89.28
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	88.21
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	87.46
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	86.43

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.9e-08  Score=65.41  Aligned_cols=74  Identities=16%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      .|..++.+++|+|     ..+.+||.|.+.|.|+++...+....+.......++..+.+++|+.+    ..+|++|+.+|
T Consensus        49 ~H~~~V~~v~fs~-----~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d----g~~l~s~~~dg  119 (337)
T d1gxra_          49 NHGEVVCAVTISN-----PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD----GCTLIVGGEAS  119 (337)
T ss_dssp             CCSSCCCEEEECS-----SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT----SSEEEEEESSS
T ss_pred             CCCCcEEEEEECC-----CCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC----CCEEEEeeccc
Confidence            6889999999987     35779999988999999988766556666655567888999999976    34699999999


Q ss_pred             EeC
Q psy8253          86 VIR   88 (88)
Q Consensus        86 ~Ir   88 (88)
                      .|+
T Consensus       120 ~i~  122 (337)
T d1gxra_         120 TLS  122 (337)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            885

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=2e-07  Score=60.44  Aligned_cols=76  Identities=9%  Similarity=0.133  Sum_probs=59.1

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCC-eeEEEEEEcCCCCCceeEEEEeecCCCCceEEE
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGS-IKLLQCYADPDIEENFYTCAWSMDLESGRPLLA   79 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~-~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa   79 (88)
                      .+.+.|...|.+++|+|-     .+.+|+++.+ .|.||++..... .++++.+   .+...+.+++|+.+   +..+|+
T Consensus         5 ~~~~~h~d~I~~l~fsp~-----~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~---~h~~~V~~v~f~~~---~~~~l~   73 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPS-----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCCNFIDN---TDLQIY   73 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGG-----GTEEEEEETTSEEEEEEEETTTTEEEEEEEE---ECSSCEEEEEEEES---SSEEEE
T ss_pred             EcCCCCCCCEEEEEEeCC-----CCEEEEEECCCeEEEEEccCCCcceEEEEec---CCCCCEEEEEEeCC---CCCEEE
Confidence            356889999999999993     4578888765 699999987654 4445555   36778999999976   245699


Q ss_pred             EecCCcEeC
Q psy8253          80 VAGSRAVIR   88 (88)
Q Consensus        80 ~aG~~G~Ir   88 (88)
                      +||.+|.|+
T Consensus        74 sg~~d~~v~   82 (342)
T d1yfqa_          74 VGTVQGEIL   82 (342)
T ss_dssp             EEETTSCEE
T ss_pred             Eccccccee
Confidence            999999874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=7.9e-07  Score=60.08  Aligned_cols=74  Identities=22%  Similarity=0.350  Sum_probs=53.3

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEE-------------EEEEcCCCCCceeEEEEeecCC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLL-------------QCYADPDIEENFYTCAWSMDLE   72 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l-------------~~~~d~d~~e~~y~~aWs~d~~   72 (88)
                      +|..+|.+++|+|     +.+++|+.+.+.|.|+++.....+..+             .......++..+.+++|+.+  
T Consensus        60 ~H~~~V~~l~fs~-----dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--  132 (388)
T d1erja_          60 DHTSVVCCVKFSN-----DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--  132 (388)
T ss_dssp             ECSSCCCEEEECT-----TSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT--
T ss_pred             CCCCcEEEEEECC-----CCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC--
Confidence            5999999999998     246899988788999999875322211             12222345677999999976  


Q ss_pred             CCceEEEEecCCcEeC
Q psy8253          73 SGRPLLAVAGSRAVIR   88 (88)
Q Consensus        73 ~~~plLa~aG~~G~Ir   88 (88)
                        ..+|++|+.+|.||
T Consensus       133 --~~~l~s~~~dg~v~  146 (388)
T d1erja_         133 --GKFLATGAEDRLIR  146 (388)
T ss_dssp             --SSEEEEEETTSCEE
T ss_pred             --CCcceecccccccc
Confidence              35799999999875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.32  E-value=2.9e-06  Score=55.47  Aligned_cols=71  Identities=11%  Similarity=0.245  Sum_probs=56.5

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..+|++++|+|.     .+++|++|.+ .|.|+++...   +.++.+.  .+...+.+++|+.+    ..+|++|+
T Consensus        51 L~GH~~~I~~l~~s~~-----~~~l~sgs~Dg~v~iWd~~~~---~~~~~~~--~~~~~v~~v~~~~~----~~~l~~~~  116 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTD-----SRLLVSASQDGKLIIWDSYTT---NKVHAIP--LRSSWVMTCAYAPS----GNYVACGG  116 (340)
T ss_dssp             ECCCSSCEEEEEECTT-----SSEEEEEETTTEEEEEETTTT---EEEEEEE--CSCSCEEEEEECTT----SSEEEEEE
T ss_pred             ECCCCCCEEEEEECCC-----CCEEEEEECCCceeeeecccc---eeEEEEe--cccccEEeeEeecc----ceeeeeec
Confidence            3579999999999983     4689999976 6999999876   5666664  35778999999876    35699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .++.|+
T Consensus       117 ~d~~i~  122 (340)
T d1tbga_         117 LDNICS  122 (340)
T ss_dssp             TTCCEE
T ss_pred             ccceee
Confidence            988763

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=1.3e-06  Score=56.04  Aligned_cols=70  Identities=7%  Similarity=0.186  Sum_probs=53.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|.     .+++|+.|.+ .|.||++....   +++.+.  .+...+.+++|+.+    .++|++||.
T Consensus       244 ~~~~~~v~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~---~~~~~~--~h~~~V~~~~~s~~----~~~l~s~s~  309 (317)
T d1vyhc1         244 VGHDNWVRGVLFHSG-----GKFILSCADDKTLRVWDYKNKR---CMKTLN--AHEHFVTSLDFHKT----APYVVTGSV  309 (317)
T ss_dssp             ECCSSCEEEEEECSS-----SSCEEEEETTTEEEEECCTTSC---CCEEEE--CCSSCEEEEEECSS----SSCEEEEET
T ss_pred             eCCCCCEEEEEECCC-----CCEEEEEECCCeEEEEECCCCc---EEEEEc--CCCCCEEEEEEcCC----CCEEEEEeC
Confidence            457889999999883     3567777754 69999998764   444443  35678999999976    356999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      ||.||
T Consensus       310 Dg~i~  314 (317)
T d1vyhc1         310 DQTVK  314 (317)
T ss_dssp             TSEEE
T ss_pred             CCeEE
Confidence            99986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=2.5e-06  Score=59.14  Aligned_cols=75  Identities=16%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCCe----EEEEEcCCCCCeeEEEEEEc--------CCCCCceeEEEEeecCC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSNR----VSIYECPDGGSIKLLQCYAD--------PDIEENFYTCAWSMDLE   72 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~----v~Vy~~~~~~~~~~l~~~~d--------~d~~e~~y~~aWs~d~~   72 (88)
                      ..|..+|.+++|+|     ..+++|+.+.++    |.||++.....+..|+....        ..+...+++++|+.|  
T Consensus       228 ~~h~~~V~~l~~sp-----dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd--  300 (393)
T d1sq9a_         228 INNSNSIRSVKFSP-----QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS--  300 (393)
T ss_dssp             -CCCCCEEEEEECS-----STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS--
T ss_pred             ccccceEEEccccc-----ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCC--
Confidence            46889999999998     356788887653    88999887643333321110        136778999999987  


Q ss_pred             CCceEEEEecCCcEeC
Q psy8253          73 SGRPLLAVAGSRAVIR   88 (88)
Q Consensus        73 ~~~plLa~aG~~G~Ir   88 (88)
                        .++|++||.||.||
T Consensus       301 --~~~l~S~s~D~~v~  314 (393)
T d1sq9a_         301 --GETLCSAGWDGKLR  314 (393)
T ss_dssp             --SSEEEEEETTSEEE
T ss_pred             --CCeeEEECCCCEEE
Confidence              46799999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5.1e-06  Score=56.12  Aligned_cols=70  Identities=13%  Similarity=0.226  Sum_probs=53.9

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      ...|..++.+++|+|-     .+.|++.|.+ .|.||+....   +.++.+.   +...+.+++|+.+    ..+||+||
T Consensus       261 ~~~~~~~i~~v~~s~~-----g~~l~s~s~Dg~i~iwd~~~~---~~~~~~~---~~~~v~~~~~s~d----~~~l~t~s  325 (337)
T d1gxra_         261 LHLHESCVLSLKFAYC-----GKWFVSTGKDNLLNAWRTPYG---ASIFQSK---ESSSVLSCDISVD----DKYIVTGS  325 (337)
T ss_dssp             ECCCSSCEEEEEECTT-----SSEEEEEETTSEEEEEETTTC---CEEEEEE---CSSCEEEEEECTT----SCEEEEEE
T ss_pred             ccccccccceEEECCC-----CCEEEEEeCCCeEEEEECCCC---CEEEEcc---CCCCEEEEEEeCC----CCEEEEEe
Confidence            3567889999999883     4578887775 6999998876   4455553   4678999999976    34699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .||.||
T Consensus       326 ~D~~I~  331 (337)
T d1gxra_         326 GDKKAT  331 (337)
T ss_dssp             TTSCEE
T ss_pred             CCCeEE
Confidence            999885

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.10  E-value=1e-05  Score=55.45  Aligned_cols=72  Identities=14%  Similarity=0.223  Sum_probs=55.4

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..+|.+++|+|-     ...+|++|.+ .|.|+++...   ...+......+.+.+.+++|+.+    ...|++|+.
T Consensus        48 ~gH~~~V~~l~fsp~-----~~~l~s~s~D~~i~vWd~~~~---~~~~~~~~~~~~~~v~~i~~~p~----~~~l~~~s~  115 (371)
T d1k8kc_          48 KEHNGQVTGVDWAPD-----SNRIVTCGTDRNAYVWTLKGR---TWKPTLVILRINRAARCVRWAPN----EKKFAVGSG  115 (371)
T ss_dssp             ECCSSCEEEEEEETT-----TTEEEEEETTSCEEEEEEETT---EEEEEEECCCCSSCEEEEEECTT----SSEEEEEET
T ss_pred             cCCCCCEEEEEECCC-----CCEEEEEECCCeEEEEeeccc---ccccccccccccccccccccccc----cccceeecc
Confidence            578999999999983     4679999886 5999998765   33334444457889999999876    346899998


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       116 d~~i~  120 (371)
T d1k8kc_         116 SRVIS  120 (371)
T ss_dssp             TSSEE
T ss_pred             cCcce
Confidence            88764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.10  E-value=1.6e-05  Score=51.84  Aligned_cols=72  Identities=15%  Similarity=0.169  Sum_probs=57.2

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.+++|+|     ..+.||+.+.+ .|.++++...   +.++.+........+.+++|+.+    ..+|++|+.
T Consensus       223 ~~h~~~i~~v~~~p-----~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~g~~  290 (340)
T d1tbga_         223 TGHESDINAICFFP-----NGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKS----GRLLLAGYD  290 (340)
T ss_dssp             CCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECSS----SCEEEEEET
T ss_pred             eCCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEeeccc---ccccccccccccCceEEEEECCC----CCEEEEEEC
Confidence            56888999999987     34678888766 6999998875   56666666667888999999976    357999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       291 dg~i~  295 (340)
T d1tbga_         291 DFNCN  295 (340)
T ss_dssp             TSCEE
T ss_pred             CCEEE
Confidence            99875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.06  E-value=9.6e-06  Score=55.64  Aligned_cols=69  Identities=16%  Similarity=0.194  Sum_probs=52.0

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      ..||.+++|+|-     ...+|+++.+ .|.||+...+ ..+.++.+.  .+...+.+++|+.+    ..+|++||.||.
T Consensus         7 ~~pIt~~~~s~d-----g~~la~~~~~~~i~iw~~~~~-~~~~~~~l~--gH~~~V~~l~fsp~----~~~l~s~s~D~~   74 (371)
T d1k8kc_           7 VEPISCHAWNKD-----RTQIAICPNNHEVHIYEKSGN-KWVQVHELK--EHNGQVTGVDWAPD----SNRIVTCGTDRN   74 (371)
T ss_dssp             SSCCCEEEECTT-----SSEEEEECSSSEEEEEEEETT-EEEEEEEEE--CCSSCEEEEEEETT----TTEEEEEETTSC
T ss_pred             CCCeEEEEECCC-----CCEEEEEeCCCEEEEEECCCC-CEEEEEEec--CCCCCEEEEEECCC----CCEEEEEECCCe
Confidence            468999999983     4578888876 5999998765 234444443  46788999999976    246999999998


Q ss_pred             eC
Q psy8253          87 IR   88 (88)
Q Consensus        87 Ir   88 (88)
                      ||
T Consensus        75 i~   76 (371)
T d1k8kc_          75 AY   76 (371)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.00  E-value=8.3e-06  Score=55.39  Aligned_cols=76  Identities=18%  Similarity=0.345  Sum_probs=54.2

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEE--EcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCY--ADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~--~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      .+.|..++.+++|+|.     .+++|+++.+ .|.+|+......+..++.-  ....+...+++++|+.+    ..+|++
T Consensus       185 ~~~~~~~i~~v~~~p~-----~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~----~~~l~t  255 (311)
T d1nr0a1         185 FGEHTKFVHSVRYNPD-----GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD----GTKIAS  255 (311)
T ss_dssp             ECCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT----SSEEEE
T ss_pred             cccccccccccccCcc-----ccccccccccccccccccccccccccccccccccccccccccccccCCC----CCEEEE
Confidence            4578899999999982     4678887764 7999999876433322211  11134677999999976    246999


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      ||.||.||
T Consensus       256 gs~Dg~v~  263 (311)
T d1nr0a1         256 ASADKTIK  263 (311)
T ss_dssp             EETTSEEE
T ss_pred             EeCCCeEE
Confidence            99999885

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=3.2e-05  Score=49.20  Aligned_cols=70  Identities=11%  Similarity=0.271  Sum_probs=52.8

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      .+.|..+|.+++|+|-     .+++||+|.+ .|.|+++...   ++++.+.  .+...+.+++|+.+    ..+|++++
T Consensus        13 L~GH~~~I~~l~~sp~-----~~~l~s~s~Dg~i~iWd~~~~---~~~~~~~--~h~~~V~~~~~~~~----~~~~~~~~   78 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPV-----FSVMVSASEDATIKVWDYETG---DFERTLK--GHTDSVQDISFDHS----GKLLASCS   78 (317)
T ss_dssp             EECCSSCEEEEEECSS-----SSEEEEEESSSCEEEEETTTC---CCCEEEC--CCSSCEEEEEECTT----SSEEEEEE
T ss_pred             EcCCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEECCCC---CEEEEEe--CCCCcEEEEeeecc----cccccccc
Confidence            3569999999999983     4689999876 6999999876   4455553  46788999999876    35577776


Q ss_pred             CCcEe
Q psy8253          83 SRAVI   87 (88)
Q Consensus        83 ~~G~I   87 (88)
                      .++.+
T Consensus        79 ~~~~~   83 (317)
T d1vyhc1          79 ADMTI   83 (317)
T ss_dssp             TTSCC
T ss_pred             ccccc
Confidence            66543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.83  E-value=4.2e-05  Score=49.85  Aligned_cols=73  Identities=7%  Similarity=0.083  Sum_probs=53.2

Q ss_pred             cccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           2 SHKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         2 ~~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      ++.+-|..+|.+++|+|-     .+++|++|.+ .|.|+++...   +.++.+.+ .+...+.+++|+.+   + . |++
T Consensus         6 ~~~~GH~~~V~~l~~s~d-----g~~l~s~s~Dg~v~vWd~~~~---~~~~~~~~-~h~~~v~~v~~~~~---g-~-~~~   71 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSAD-----GKTLFSADAEGHINSWDISTG---ISNRVFPD-VHATMITGIKTTSK---G-D-LFT   71 (299)
T ss_dssp             EEECCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTC---CEEECSSC-SCSSCEEEEEECTT---S-C-EEE
T ss_pred             eEcCCCCCCcEEEEECCC-----CCEEEEEcCCCeEEEEECCCC---cEEEEEcC-CCCCcEEEEEeecc---c-e-eec
Confidence            456789999999999982     4678998886 5999998775   44454433 36778999999976   2 3 455


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      +|.++.|+
T Consensus        72 ~~~d~~v~   79 (299)
T d1nr0a2          72 VSWDDHLK   79 (299)
T ss_dssp             EETTTEEE
T ss_pred             ccceeeEE
Confidence            56666653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.73  E-value=6.8e-05  Score=50.68  Aligned_cols=72  Identities=11%  Similarity=0.140  Sum_probs=53.0

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCCe---EEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEE
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSNR---VSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~---v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      .+.|..++.+++|+|     +.+.++++|.++   +.|+.......+..+     ..+.+.+.+++|+.+   +.-+|++
T Consensus        98 ~~~~~~~v~~v~~s~-----d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l-----~~h~~~v~~v~~~~~---~~~~l~s  164 (311)
T d1nr0a1          98 IPVFSGPVKDISWDS-----ESKRIAAVGEGRERFGHVFLFDTGTSNGNL-----TGQARAMNSVDFKPS---RPFRIIS  164 (311)
T ss_dssp             EECSSSCEEEEEECT-----TSCEEEEEECCSSCSEEEEETTTCCBCBCC-----CCCSSCEEEEEECSS---SSCEEEE
T ss_pred             cccccCccccccccc-----cccccccccccccccccccccccccccccc-----ccccccccccccccc---ceeeecc
Confidence            356888999999988     356788888653   788988776433222     246778999999876   3446889


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      |+.+|.|+
T Consensus       165 gs~d~~i~  172 (311)
T d1nr0a1         165 GSDDNTVA  172 (311)
T ss_dssp             EETTSCEE
T ss_pred             cccccccc
Confidence            99999874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.66  E-value=9.4e-05  Score=49.85  Aligned_cols=73  Identities=22%  Similarity=0.456  Sum_probs=49.7

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcC--CCCCceeEEEEeecCCCCceEEEE
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADP--DIEENFYTCAWSMDLESGRPLLAV   80 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~--d~~e~~y~~aWs~d~~~~~plLa~   80 (88)
                      .+.|...+.+++|+|-    ...++|++|.+ .|.||+....   +.++.+...  ......|+++|.    ++ .+|++
T Consensus       201 ~~~~~~~v~~v~~~pd----~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~~~~~s~~~~----dg-~~l~s  268 (325)
T d1pgua1         201 HHKQGSFVRDVEFSPD----SGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQGGIFALSWL----DS-QKFAT  268 (325)
T ss_dssp             SSCTTCCEEEEEECST----TCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCCSCEEEEEES----SS-SEEEE
T ss_pred             ccCCCCccEEeeeccc----cceeccccccccceeeeeeccc---cccccccccccccccceeeeecc----CC-CEEEE
Confidence            3567788999999982    35678888765 5999998766   455555421  122334555553    23 45899


Q ss_pred             ecCCcEeC
Q psy8253          81 AGSRAVIR   88 (88)
Q Consensus        81 aG~~G~Ir   88 (88)
                      ||.||.||
T Consensus       269 ~s~D~~i~  276 (325)
T d1pgua1         269 VGADATIR  276 (325)
T ss_dssp             EETTSEEE
T ss_pred             EeCCCeEE
Confidence            99999885

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.65  E-value=4.2e-05  Score=49.86  Aligned_cols=73  Identities=12%  Similarity=0.143  Sum_probs=52.7

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|.     .+.+++.+. ++|.+|++.....+..++.+  ..+...+.+++|+.+    ..+|++||.
T Consensus       176 ~~~~~~i~~~~~~~~-----~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~~----~~~l~sgs~  244 (299)
T d1nr0a2         176 IVHPAEITSVAFSNN-----GAFLVATDQSRKVIPYSVANNFELAHTNSW--TFHTAKVACVSWSPD----NVRLATGSL  244 (299)
T ss_dssp             EECSSCEEEEEECTT-----SSEEEEEETTSCEEEEEGGGTTEESCCCCC--CCCSSCEEEEEECTT----SSEEEEEET
T ss_pred             ccccccccccccccc-----cccccccccccccccccccccccccccccc--ccccccccccccccc----ccceEEEcC
Confidence            357789999999883     345666655 47999999876433333333  235778999999976    467999999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       245 dg~i~  249 (299)
T d1nr0a2         245 DNSVI  249 (299)
T ss_dssp             TSCEE
T ss_pred             CCEEE
Confidence            99874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=0.00027  Score=45.58  Aligned_cols=67  Identities=13%  Similarity=0.278  Sum_probs=50.7

Q ss_pred             ccCCCCeEE-EEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           5 EDHGQPLFG-AQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         5 e~h~~~~y~-v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      +.|...+.. ++|+       .+.+||.|.+ .|.|+++...   +.++.+.  .++..+++++|+.+     .+|++||
T Consensus         9 ~GH~~~vitc~~~~-------~~~l~tgs~Dg~i~vWd~~~~---~~~~~l~--~H~~~V~~l~~s~~-----~~l~s~s   71 (355)
T d1nexb2           9 RGHMTSVITCLQFE-------DNYVITGADDKMIRVYDSINK---KFLLQLS--GHDGGVWALKYAHG-----GILVSGS   71 (355)
T ss_dssp             ECCSSSCEEEEEEE-------TTEEEEEETTTEEEEEETTTT---EEEEEEE--CCSSCEEEEEEETT-----TEEEEEE
T ss_pred             CCcCCCcEEEEEEC-------CCEEEEEeCCCeEEEEECCCC---cEEEEEE--CCCCCEEEEEEcCC-----CEEEEEe
Confidence            568887654 4553       3578998876 6999998775   6677765  47888999999854     3699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .||.||
T Consensus        72 ~D~~i~   77 (355)
T d1nexb2          72 TDRTVR   77 (355)
T ss_dssp             TTCCEE
T ss_pred             cccccc
Confidence            999875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00023  Score=45.67  Aligned_cols=67  Identities=15%  Similarity=0.223  Sum_probs=48.9

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEc---CCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYAD---PDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d---~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      .|...+.++.|+|       +.++++|.+ .|.|+++...   ++++.+..   +.+...+.+++|+.+    ..+||+|
T Consensus       258 ~~~~~~~~~~~~~-------~~~~s~s~Dg~i~iwd~~tg---~~i~~~~~~~~~~~~~~v~~v~~s~~----~~~la~g  323 (342)
T d2ovrb2         258 KHQSAVTCLQFNK-------NFVITSSDDGTVKLWDLKTG---EFIRNLVTLESGGSGGVVWRIRASNT----KLVCAVG  323 (342)
T ss_dssp             SCSSCEEEEEECS-------SEEEEEETTSEEEEEETTTC---CEEEEEEECTTGGGTCEEEEEEECSS----EEEEEEE
T ss_pred             eeeeceeecccCC-------CeeEEEcCCCEEEEEECCCC---CEEEEEecccCCCCCCCEEEEEECCC----CCEEEEE
Confidence            4556667776654       468888776 6999999876   55655542   235677999999866    4679999


Q ss_pred             cCCcE
Q psy8253          82 GSRAV   86 (88)
Q Consensus        82 G~~G~   86 (88)
                      +.+|.
T Consensus       324 ~~dGt  328 (342)
T d2ovrb2         324 SRNGT  328 (342)
T ss_dssp             CSSSS
T ss_pred             eCCCC
Confidence            99984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=0.00053  Score=45.64  Aligned_cols=74  Identities=9%  Similarity=0.066  Sum_probs=54.1

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCC-C-CceEEEEe
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLE-S-GRPLLAVA   81 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~-~-~~plLa~a   81 (88)
                      ..|...+.+++|+|.     .+.+|+.+. +.|.||++...   +.++.+.  .+...+.+++|+.... + ...+||+|
T Consensus       305 ~~~~~~v~~~~~s~~-----~~~l~sg~~dg~i~vwd~~~~---~~~~~l~--~H~~~V~~~~~~~~~~~spd~~~l~s~  374 (388)
T d1erja_         305 IGHKDFVLSVATTQN-----DEYILSGSKDRGVLFWDKKSG---NPLLMLQ--GHRNSVISVAVANGSSLGPEYNVFATG  374 (388)
T ss_dssp             ECCSSCEEEEEECGG-----GCEEEEEETTSEEEEEETTTC---CEEEEEE--CCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             ccccceEEEEEECCC-----CCEEEEEeCCCEEEEEECCCC---cEEEEEe--CCCCCEEEEEEecCcccCCCCCEEEEE
Confidence            457788999999883     345666665 57999999876   4455553  3677899999986522 1 24689999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      |.||.||
T Consensus       375 s~Dg~I~  381 (388)
T d1erja_         375 SGDCKAR  381 (388)
T ss_dssp             ETTSEEE
T ss_pred             eCCCEEE
Confidence            9999986

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.53  E-value=0.00022  Score=46.08  Aligned_cols=76  Identities=14%  Similarity=0.200  Sum_probs=56.0

Q ss_pred             cccCCCCeEEEEEecCCC-----CCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceE
Q psy8253           4 KEDHGQPLFGAQFNHLLK-----DDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPL   77 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~-----~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~pl   77 (88)
                      ...|..++.+++|+|...     ....++||+.+.+ .|.||++...+  +.++..  ..+...+.+++|+.+    . .
T Consensus       201 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~--~~~~~~--~~h~~~V~~v~~~~~----~-~  271 (287)
T d1pgua2         201 WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKAL--NAHKDGVNNLLWETP----S-T  271 (287)
T ss_dssp             SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--CCEEET--TSSTTCEEEEEEEET----T-E
T ss_pred             ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC--eEEEEe--CCCCCCeEEEEECCC----C-E
Confidence            356788999999999643     2457889988876 69999987643  333332  246788999999965    2 3


Q ss_pred             EEEecCCcEeC
Q psy8253          78 LAVAGSRAVIR   88 (88)
Q Consensus        78 La~aG~~G~Ir   88 (88)
                      |+++|.||.||
T Consensus       272 l~s~g~D~~v~  282 (287)
T d1pgua2         272 LVSSGADACIK  282 (287)
T ss_dssp             EEEEETTSCEE
T ss_pred             EEEEECCCeEE
Confidence            88999999986

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00036  Score=43.73  Aligned_cols=67  Identities=7%  Similarity=0.189  Sum_probs=50.5

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEec
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAG   82 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG   82 (88)
                      +++|...|++++|+       .+.+||.|.+ .|.|+++...   ++++.+.  .+...+.+++|  +   + .+|++||
T Consensus        11 ~~~~~~~V~c~~~d-------~~~l~sgs~Dg~i~vWd~~~~---~~~~~l~--~H~~~V~~v~~--~---~-~~l~s~s   72 (293)
T d1p22a2          11 RSETSKGVYCLQYD-------DQKIVSGLRDNTIKIWDKNTL---ECKRILT--GHTGSVLCLQY--D---E-RVIITGS   72 (293)
T ss_dssp             CCSSCCCEEEEECC-------SSEEEEEESSSCEEEEESSSC---CEEEEEC--CCSSCEEEEEC--C---S-SEEEEEE
T ss_pred             cCCCCCCEEEEEEc-------CCEEEEEeCCCeEEEEECCCC---cEEEEEe--cCCCCEeeeec--c---c-ceeeccc
Confidence            46788889987752       4578998886 5999999765   5566553  46778999988  2   2 3699999


Q ss_pred             CCcEeC
Q psy8253          83 SRAVIR   88 (88)
Q Consensus        83 ~~G~Ir   88 (88)
                      .+|.|+
T Consensus        73 ~D~~i~   78 (293)
T d1p22a2          73 SDSTVR   78 (293)
T ss_dssp             TTSCEE
T ss_pred             cccccc
Confidence            999874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=0.0002  Score=48.09  Aligned_cols=76  Identities=17%  Similarity=0.254  Sum_probs=51.3

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..++.++.|.+..+  ..+.||++|.+ .|.|+++...   ++++.+.-....-....++|+..   ++..|++||.
T Consensus       245 ~~~~~~v~~~~~s~~~~--dg~~l~s~s~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~  316 (325)
T d1pgua1         245 EDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT---GNGRIISLSL  316 (325)
T ss_dssp             CBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE---ETTEEEEEET
T ss_pred             cccccccccceeeeecc--CCCEEEEEeCCCeEEEEECCCC---CEEEEEEecCCcccCeEEEEEEC---CCCEEEEEEC
Confidence            45677777777776553  35688998876 5999999876   78888865444333333344333   1235889999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.||
T Consensus       317 dg~i~  321 (325)
T d1pgua1         317 DGTLN  321 (325)
T ss_dssp             TSCEE
T ss_pred             CCEEE
Confidence            99885

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00047  Score=44.13  Aligned_cols=69  Identities=6%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             ccccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           3 HKEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         3 ~~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      +.+.|..++..| |.|-     .+.+||.|.+ .|.|+++...   ++++.+.  .+...+++++|+.+      +|++|
T Consensus        11 ~l~GH~~~V~s~-~~~~-----g~~l~sgs~Dg~i~vWd~~~~---~~~~~~~--~h~~~V~~v~~~~~------~l~s~   73 (342)
T d2ovrb2          11 VLKGHDDHVITC-LQFC-----GNRIVSGSDDNTLKVWSAVTG---KCLRTLV--GHTGGVWSSQMRDN------IIISG   73 (342)
T ss_dssp             EEECSTTSCEEE-EEEE-----TTEEEEEETTSCEEEEETTTC---CEEEECC--CCSSCEEEEEEETT------EEEEE
T ss_pred             EECCcCCceEEE-EEEC-----CCEEEEEeCCCeEEEEECCCC---CEEEEEe--CCCCCEEEEEeCCC------ccccc
Confidence            346799998764 5441     3578999887 5999999775   5566663  46778999999732      79999


Q ss_pred             cCCcEeC
Q psy8253          82 GSRAVIR   88 (88)
Q Consensus        82 G~~G~Ir   88 (88)
                      |.+|.++
T Consensus        74 s~D~~~~   80 (342)
T d2ovrb2          74 STDRTLK   80 (342)
T ss_dssp             ETTSCEE
T ss_pred             eeccccc
Confidence            9998774

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=0.00031  Score=45.37  Aligned_cols=76  Identities=9%  Similarity=0.013  Sum_probs=52.7

Q ss_pred             cccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCC------CCce
Q psy8253           4 KEDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLE------SGRP   76 (88)
Q Consensus         4 ~e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~------~~~p   76 (88)
                      +..|..++.+++|+|-     ...+|+.+.+ .|.||+.....  .+...+  ..+...+.+++|+.+..      ....
T Consensus       158 ~~~~~~~v~~~~~s~~-----~~~l~~g~~dg~i~i~d~~~~~--~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~~~  228 (287)
T d1pgua2         158 KTPLRAKPSYISISPS-----ETYIAAGDVMGKILLYDLQSRE--VKTSRW--AFRTSKINAISWKPAEKGANEEEIEED  228 (287)
T ss_dssp             SSCCSSCEEEEEECTT-----SSEEEEEETTSCEEEEETTTTE--EEECCS--CCCSSCEEEEEECCCC------CCSCC
T ss_pred             eeccCCceeEEEeccC-----ccccccccccccccceeecccc--cccccc--cccccccceeeecccccccccccCCCC
Confidence            4567788999999873     3567776655 79999987652  111112  13577799999997632      2356


Q ss_pred             EEEEecCCcEeC
Q psy8253          77 LLAVAGSRAVIR   88 (88)
Q Consensus        77 lLa~aG~~G~Ir   88 (88)
                      +||+|+.||.||
T Consensus       229 ~l~sgs~D~~i~  240 (287)
T d1pgua2         229 LVATGSLDTNIF  240 (287)
T ss_dssp             EEEEEETTSCEE
T ss_pred             eeEeecCCCeEE
Confidence            799999999875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.0009  Score=42.49  Aligned_cols=66  Identities=17%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      ..|..++.+++|+|-     .++|||.|.+ .|.|+++...   +.|+.+..   ......++|+.+   ++ +||+|+.
T Consensus       248 ~~~~~~v~~l~~sp~-----~~~lasg~~Dg~v~vWD~~~~---~~l~~~~~---~~~~~~~~~s~~---~~-~l~~a~s  312 (342)
T d1yfqa_         248 TNLAYPVNSIEFSPR-----HKFLYTAGSDGIISCWNLQTR---KKIKNFAK---FNEDSVVKIACS---DN-ILCLATS  312 (342)
T ss_dssp             CSSCCCEEEEEECTT-----TCCEEEEETTSCEEEEETTTT---EEEEECCC---CSSSEEEEEEEC---SS-EEEEEEE
T ss_pred             CcccccceeEEecCC-----ccEEEEECCCCEEEEEECCCC---cEEEEecC---CCCCEEEEEEeC---CC-EEEEEEc
Confidence            456677889999983     4569999987 5999998875   56666632   234456777776   33 4666655


Q ss_pred             Cc
Q psy8253          84 RA   85 (88)
Q Consensus        84 ~G   85 (88)
                      ++
T Consensus       313 dd  314 (342)
T d1yfqa_         313 DD  314 (342)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.0026  Score=40.69  Aligned_cols=71  Identities=7%  Similarity=0.187  Sum_probs=48.1

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +.|..+|.+++|+|      ...++++|.+ .|.++.....   +.+..............+.+..+    ...|++++.
T Consensus        50 ~~H~~~V~~l~~s~------~~~l~s~s~D~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  116 (355)
T d1nexb2          50 SGHDGGVWALKYAH------GGILVSGSTDRTVRVWDIKKG---CCTHVFEGHNSTVRCLDIVEYKN----IKYIVTGSR  116 (355)
T ss_dssp             ECCSSCEEEEEEET------TTEEEEEETTCCEEEEETTTT---EEEEEECCCSSCEEEEEEEEETT----EEEEEEEET
T ss_pred             ECCCCCEEEEEEcC------CCEEEEEeccccccccccccc---ccccccccccccccccccccccc----cceeeeecC
Confidence            56899999999986      2368888776 5899998775   44444433333444444444433    466899999


Q ss_pred             CcEeC
Q psy8253          84 RAVIR   88 (88)
Q Consensus        84 ~G~Ir   88 (88)
                      +|.|+
T Consensus       117 d~~i~  121 (355)
T d1nexb2         117 DNTLH  121 (355)
T ss_dssp             TSEEE
T ss_pred             CCcEE
Confidence            98874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00072  Score=43.89  Aligned_cols=54  Identities=19%  Similarity=0.208  Sum_probs=42.2

Q ss_pred             EEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          29 ATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        29 AtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      |.-.++.|+|+.+..++.+++++.+   +.+.....++|+.|   |+-|+++++.+|.|+
T Consensus         9 ~~~~~~~I~v~~~~~~~~l~~~~~~---~~~~~v~~la~spD---G~~L~v~~~~d~~i~   62 (333)
T d1ri6a_           9 ASPESQQIHVWNLNHEGALTLTQVV---DVPGQVQPMVVSPD---KRYLYVGVRPEFRVL   62 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEE---ECSSCCCCEEECTT---SSEEEEEETTTTEEE
T ss_pred             ECCCCCcEEEEEEcCCCCeEEEEEE---cCCCCEeEEEEeCC---CCEEEEEECCCCeEE
Confidence            3336668999999988889999998   45677889999988   667667777777663

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=0.00089  Score=45.76  Aligned_cols=70  Identities=17%  Similarity=0.096  Sum_probs=47.8

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCC-eEEEEEcCCCCCeeEEEEE-EcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSN-RVSIYECPDGGSIKLLQCY-ADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~-~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      .+...+.+++|+|      +.++|+.+.+ .|.||++.....+..++.. .-..+...+.+++|+.|    ..+|++||.
T Consensus       182 ~~~~~~~~v~~s~------dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd----g~~l~sgs~  251 (393)
T d1sq9a_         182 TPSQFATSVDISE------RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ----GSLLAIAHD  251 (393)
T ss_dssp             SSCCCCCEEEECT------TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS----TTEEEEEEE
T ss_pred             CCCCcEEEEEECC------CCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc----cceeeeecC
Confidence            4455678899986      2378988877 5999999876433333221 11246788999999986    356899987


Q ss_pred             Cc
Q psy8253          84 RA   85 (88)
Q Consensus        84 ~G   85 (88)
                      |+
T Consensus       252 D~  253 (393)
T d1sq9a_         252 SN  253 (393)
T ss_dssp             ET
T ss_pred             CC
Confidence            65

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.79  E-value=0.0035  Score=40.68  Aligned_cols=68  Identities=16%  Similarity=0.138  Sum_probs=46.9

Q ss_pred             ccCCCCeEEEEEecCCCCCCCCEEEEeCCC---eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEe
Q psy8253           5 EDHGQPLFGAQFNHLLKDDQPRIFATVGSN---RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVA   81 (88)
Q Consensus         5 e~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~---~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~a   81 (88)
                      -.|...+.+++|+|-     .+.++++|..   .|.|+.....   ++.+..   .+...+.+++|+.|   + .+|+++
T Consensus        39 ~~~~~~v~~~~~spD-----g~~l~~~~~~~g~~v~v~d~~~~---~~~~~~---~~~~~v~~~~~spd---g-~~l~~~  103 (360)
T d1k32a3          39 VPEPLRIRYVRRGGD-----TKVAFIHGTREGDFLGIYDYRTG---KAEKFE---ENLGNVFAMGVDRN---G-KFAVVA  103 (360)
T ss_dssp             CSCCSCEEEEEECSS-----SEEEEEEEETTEEEEEEEETTTC---CEEECC---CCCCSEEEEEECTT---S-SEEEEE
T ss_pred             ccCCCCEEEEEECCC-----CCEEEEEEcCCCCEEEEEECCCC---cEEEee---CCCceEEeeeeccc---c-ccccee
Confidence            357889999999883     3446666544   5888887654   222222   46777999999987   3 358888


Q ss_pred             cCCcEe
Q psy8253          82 GSRAVI   87 (88)
Q Consensus        82 G~~G~I   87 (88)
                      +.++.|
T Consensus       104 ~~~~~~  109 (360)
T d1k32a3         104 NDRFEI  109 (360)
T ss_dssp             ETTSEE
T ss_pred             cccccc
Confidence            887765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.56  E-value=0.0072  Score=38.78  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      .|...++++.++|-.     ..++..+.+.|.+++....   ++++.+.   .....++++|+.|   |+- |++||.+|
T Consensus       249 ~~~~~~~~~~~~~~~-----~~~~~~~~~~v~v~d~~~~---~~~~~~~---~~~~~~~va~s~D---G~~-l~v~~~d~  313 (346)
T d1jmxb_         249 DLTELYFTGLRSPKD-----PNQIYGVLNRLAKYDLKQR---KLIKAAN---LDHTYYCVAFDKK---GDK-LYLGGTFN  313 (346)
T ss_dssp             ECSSCEEEEEECSSC-----TTEEEEEESEEEEEETTTT---EEEEEEE---CSSCCCEEEECSS---SSC-EEEESBSS
T ss_pred             cccceeEEEEEeCCC-----CEEEEecCCeEEEEECCCC---cEEEEEc---CCCCEEEEEEcCC---CCE-EEEEeCCC
Confidence            455667777776644     2356677788999988765   7777774   3456889999987   444 88889999


Q ss_pred             EeC
Q psy8253          86 VIR   88 (88)
Q Consensus        86 ~Ir   88 (88)
                      .|+
T Consensus       314 ~v~  316 (346)
T d1jmxb_         314 DLA  316 (346)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            874

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.38  E-value=0.0046  Score=40.10  Aligned_cols=61  Identities=13%  Similarity=0.089  Sum_probs=41.7

Q ss_pred             eEEEEEecCCCCCCCCEEEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253          11 LFGAQFNHLLKDDQPRIFATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus        11 ~y~v~Fnp~~~~~~~~~fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      .|+=.|+|-+    .+.+|+++.++|.|++....   .+++.    .+...+.+++|+.|   |+.|+.+++.+|
T Consensus         5 ~~~~~fSP~d----G~~~a~~~~g~v~v~d~~~~---~~~~~----~~~~~v~~~~~spD---g~~l~~~~~~~g   65 (360)
T d1k32a3           5 KFAEDFSPLD----GDLIAFVSRGQAFIQDVSGT---YVLKV----PEPLRIRYVRRGGD---TKVAFIHGTREG   65 (360)
T ss_dssp             GGEEEEEECG----GGCEEEEETTEEEEECTTSS---BEEEC----SCCSCEEEEEECSS---SEEEEEEEETTE
T ss_pred             hhcccccCCC----CCEEEEEECCeEEEEECCCC---cEEEc----cCCCCEEEEEECCC---CCEEEEEEcCCC
Confidence            4566787743    45689999999999987553   34442    35678999999988   455444454554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.19  E-value=0.012  Score=37.62  Aligned_cols=57  Identities=7%  Similarity=0.012  Sum_probs=44.1

Q ss_pred             CEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          26 RIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        26 ~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      ..|+|++. ++|.|++....   ++++.+.-++.......++++.|   |+-++++++.+|.|+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~---~~~~~i~~~~~~~~~~~i~~spD---g~~l~v~~~~~~~v~   59 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPG---GRIAYATVNKSESLV   59 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTT---SSEEEEEETTTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCC---eEEEEEECCCCCCCccEEEECCC---CCEEEEEECCCCeEE
Confidence            35677776 58999999876   88888877666677788999977   677677878888763

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.02  Score=36.69  Aligned_cols=72  Identities=8%  Similarity=0.047  Sum_probs=46.2

Q ss_pred             cCCCCeEEEEEecCCCCCCCCEEEEeC-CCeEEEEEcCCCCC-eeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecC
Q psy8253           6 DHGQPLFGAQFNHLLKDDQPRIFATVG-SNRVSIYECPDGGS-IKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGS   83 (88)
Q Consensus         6 ~h~~~~y~v~Fnp~~~~~~~~~fAtvG-~~~v~Vy~~~~~~~-~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~   83 (88)
                      +|..++.+++|+|-    ...+|++.+ .++|.+|++..++. ++++...   ........++|+.|   |+-|+++...
T Consensus        34 ~~~~~v~~la~spD----G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~---~~~~~p~~l~~spD---g~~l~v~~~~  103 (333)
T d1ri6a_          34 DVPGQVQPMVVSPD----KRYLYVGVRPEFRVLAYRIAPDDGALTFAAES---ALPGSLTHISTDHQ---GQFVFVGSYN  103 (333)
T ss_dssp             ECSSCCCCEEECTT----SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE---ECSSCCSEEEECTT---SSEEEEEETT
T ss_pred             cCCCCEeEEEEeCC----CCEEEEEECCCCeEEEEEEeCCCCcEEEeeec---ccCCCceEEEEcCC---CCEEeecccC
Confidence            67788999999983    245666665 46899999988754 3344333   23445667999987   4554444334


Q ss_pred             CcEe
Q psy8253          84 RAVI   87 (88)
Q Consensus        84 ~G~I   87 (88)
                      ++.|
T Consensus       104 ~~~v  107 (333)
T d1ri6a_         104 AGNV  107 (333)
T ss_dssp             TTEE
T ss_pred             CCce
Confidence            4443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.06  E-value=0.032  Score=34.99  Aligned_cols=68  Identities=15%  Similarity=0.100  Sum_probs=43.8

Q ss_pred             CCeEEEEEecCCCCCCCCEEEEeCC--CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcE
Q psy8253           9 QPLFGAQFNHLLKDDQPRIFATVGS--NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAV   86 (88)
Q Consensus         9 ~~~y~v~Fnp~~~~~~~~~fAtvG~--~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~   86 (88)
                      ....+++|.|..   ....++..+.  +.|.+++....   ++++.+.   .....+.++|+.|   |+.|+++++.+|.
T Consensus       200 ~~~~~~~~~~~g---~~~~v~~~~~~~~~v~v~D~~t~---~~~~~~~---~~~~~~~va~spd---g~~l~va~~~~~~  267 (301)
T d1l0qa2         200 AAPSGIAVNPEG---TKAYVTNVDKYFNTVSMIDTGTN---KITARIP---VGPDPAGIAVTPD---GKKVYVALSFCNT  267 (301)
T ss_dssp             SEEEEEEECTTS---SEEEEEEECSSCCEEEEEETTTT---EEEEEEE---CCSSEEEEEECTT---SSEEEEEETTTTE
T ss_pred             CCcceeeccccc---cccccccccceeeeeeeeecCCC---eEEEEEc---CCCCEEEEEEeCC---CCEEEEEECCCCe
Confidence            345566666532   2223333333  35888887665   6777763   4556889999987   5676788888887


Q ss_pred             eC
Q psy8253          87 IR   88 (88)
Q Consensus        87 Ir   88 (88)
                      |+
T Consensus       268 i~  269 (301)
T d1l0qa2         268 VS  269 (301)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.30  E-value=0.013  Score=41.21  Aligned_cols=72  Identities=11%  Similarity=-0.039  Sum_probs=42.9

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeec-CCCCceEEEEecCCc
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMD-LESGRPLLAVAGSRA   85 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d-~~~~~plLa~aG~~G   85 (88)
                      +..+++++|+|-     .+.+|+.+. +.|.|+++.+.++ +.+..+.   ....-...+|+.. ..+|+.|+++++.++
T Consensus        61 g~~~~~v~fSpD-----G~~l~~~s~dg~v~~~d~~t~~~-~~~~~i~---~~~~~~~~~~s~~~SpDG~~l~vs~~~~~  131 (432)
T d1qksa2          61 GYAVHISRLSAS-----GRYLFVIGRDGKVNMIDLWMKEP-TTVAEIK---IGSEARSIETSKMEGWEDKYAIAGAYWPP  131 (432)
T ss_dssp             SSCEEEEEECTT-----SCEEEEEETTSEEEEEETTSSSC-CEEEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred             CCCeeEEEECCC-----CCEEEEEcCCCCEEEEEeeCCCc-eEEEEEe---cCCCCCCeEEecccCCCCCEEEEEcCCCC
Confidence            346899999992     355677664 5799999987654 2333321   1222334445442 113677778777777


Q ss_pred             EeC
Q psy8253          86 VIR   88 (88)
Q Consensus        86 ~Ir   88 (88)
                      .|+
T Consensus       132 ~v~  134 (432)
T d1qksa2         132 QYV  134 (432)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.20  E-value=0.063  Score=34.08  Aligned_cols=58  Identities=9%  Similarity=0.036  Sum_probs=42.4

Q ss_pred             CCCEEEEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          24 QPRIFATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        24 ~~~~fAtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      ....+++.+.+ .|+|+++.++   ++++.+.-+ .......++|+.|   |+.++++++.+|.|+
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~---~~~~t~~~~-~~~~p~~l~~spD---G~~l~v~~~~~~~v~   65 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASD---TVYKSCVMP-DKFGPGTAMMAPD---NRTAYVLNNHYGDIY   65 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTT---EEEEEEECS-SCCSSCEEEECTT---SSEEEEEETTTTEEE
T ss_pred             CCcEEEEEcCCCEEEEEECCCC---CEEEEEEcC-CCCCcceEEECCC---CCEEEEEECCCCcEE
Confidence            45667777654 7999999887   888888643 2344668999977   677778877777763

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.78  E-value=0.024  Score=38.93  Aligned_cols=71  Identities=10%  Similarity=-0.014  Sum_probs=39.7

Q ss_pred             CCCeEEEEEecCCCCCCCCEEEEeCC-CeEEEEEcCCCCCeeEEEEEEc-CCCCCceeEEEEeecCCCCceEEEEecCCc
Q psy8253           8 GQPLFGAQFNHLLKDDQPRIFATVGS-NRVSIYECPDGGSIKLLQCYAD-PDIEENFYTCAWSMDLESGRPLLAVAGSRA   85 (88)
Q Consensus         8 ~~~~y~v~Fnp~~~~~~~~~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d-~d~~e~~y~~aWs~d~~~~~plLa~aG~~G   85 (88)
                      +..+.+++|+|-     .+.+++.+. +.|.++++...... .+..+.- ..+..-.++++|+.|   |+.+++++..++
T Consensus        61 g~~~~~vafSPD-----Gk~l~~~~~d~~v~vwd~~t~~~~-~~~~i~~~~~~~~~~~s~~~spD---G~~l~v~~~~~~  131 (426)
T d1hzua2          61 GYAVHISRMSAS-----GRYLLVIGRDARIDMIDLWAKEPT-KVAEIKIGIEARSVESSKFKGYE---DRYTIAGAYWPP  131 (426)
T ss_dssp             CSSEEEEEECTT-----SCEEEEEETTSEEEEEETTSSSCE-EEEEEECCSEEEEEEECCSTTCT---TTEEEEEEEESS
T ss_pred             CCCeeEEEECCC-----CCEEEEEeCCCCEEEEEccCCcee-EEEEEeCCCCCcceEEeeeecCC---CCEEEEeecCCC
Confidence            346899999982     345666664 47999999887543 3323321 112222344455544   556555555555


Q ss_pred             Ee
Q psy8253          86 VI   87 (88)
Q Consensus        86 ~I   87 (88)
                      .|
T Consensus       132 ~v  133 (426)
T d1hzua2         132 QF  133 (426)
T ss_dssp             EE
T ss_pred             eE
Confidence            44

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.55  E-value=0.11  Score=32.67  Aligned_cols=49  Identities=12%  Similarity=0.226  Sum_probs=36.4

Q ss_pred             EeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          30 TVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        30 tvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      .++.+.+.+++....   ++++...   .....++++|+.|   |+ .|++|+.+|.|+
T Consensus       256 ~~~~~~i~v~d~~~~---~~~~~~~---~~~~~~~~~~s~d---G~-~l~v~~~~~~i~  304 (337)
T d1pbyb_         256 FGAYNVLESFDLEKN---ASIKRVP---LPHSYYSVNVSTD---GS-TVWLGGALGDLA  304 (337)
T ss_dssp             EEEESEEEEEETTTT---EEEEEEE---CSSCCCEEEECTT---SC-EEEEESBSSEEE
T ss_pred             EEccccEEEEECCCC---cEEEEEc---CCCCEEEEEECCC---CC-EEEEEeCCCcEE
Confidence            344678999998876   6666663   3566889999988   44 478889898774

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=93.81  E-value=0.12  Score=32.17  Aligned_cols=49  Identities=14%  Similarity=0.197  Sum_probs=36.0

Q ss_pred             eCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          31 VGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        31 vG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      -+++.|.|+++...   ++++.+.   ....-..++|+.|   |+.|+++++.+|.|+
T Consensus         9 ~~~~~v~v~D~~t~---~~~~~i~---~g~~p~~va~spd---G~~l~v~~~~~~~i~   57 (301)
T d1l0qa2           9 SESDNISVIDVTSN---KVTATIP---VGSNPMGAVISPD---GTKVYVANAHSNDVS   57 (301)
T ss_dssp             TTTTEEEEEETTTT---EEEEEEE---CSSSEEEEEECTT---SSEEEEEEGGGTEEE
T ss_pred             CCCCEEEEEECCCC---eEEEEEE---CCCCceEEEEeCC---CCEEEEEECCCCEEE
Confidence            35567999998776   8888884   3456788999977   566667777777763

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.10  E-value=0.48  Score=32.06  Aligned_cols=51  Identities=20%  Similarity=0.227  Sum_probs=37.2

Q ss_pred             EEEeC-CCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          28 FATVG-SNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        28 fAtvG-~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      +.+.. .+.|.|.+....   ++|+.+.   ..+..+.++.|.|   |+- |++++.+|.|+
T Consensus        35 ~V~~~~dg~v~vwD~~t~---~~~~~l~---~g~~~~~vafSPD---Gk~-l~~~~~d~~v~   86 (426)
T d1hzua2          35 SVTLRDAGQIALVDGDSK---KIVKVID---TGYAVHISRMSAS---GRY-LLVIGRDARID   86 (426)
T ss_dssp             EEEETTTTEEEEEETTTC---SEEEEEE---CCSSEEEEEECTT---SCE-EEEEETTSEEE
T ss_pred             EEEEcCCCEEEEEECCCC---cEEEEEe---CCCCeeEEEECCC---CCE-EEEEeCCCCEE
Confidence            34443 468999999886   6777763   3467899999987   454 78888888764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=89.28  E-value=1  Score=28.94  Aligned_cols=52  Identities=15%  Similarity=0.193  Sum_probs=33.9

Q ss_pred             EEEeCCCeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCce-EEEEecCCcEeC
Q psy8253          28 FATVGSNRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRP-LLAVAGSRAVIR   88 (88)
Q Consensus        28 fAtvG~~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~p-lLa~aG~~G~Ir   88 (88)
                      ......+.+.+++....   +.++..   ..+...+.++|+.|   |+. |+++++.+|.|+
T Consensus       292 ~~~~~~~~v~~~d~~t~---~~~~~~---~~~~~~~~~a~spD---G~~~l~vt~~~d~~v~  344 (373)
T d2madh_         292 KLHAAAKEVTSVTGLVG---QTSSQI---SLGHDVDAISVAQD---GGPDLYALSAGTEVLH  344 (373)
T ss_pred             EeecCCCeEEEEECCCC---cEEEEe---cCCCCeeEEEECCC---CCEEEEEEeCCCCeEE
Confidence            33444456667766555   444444   35667889999988   555 467888888774

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.21  E-value=1.6  Score=26.03  Aligned_cols=51  Identities=16%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             EEEEeCC-CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          27 IFATVGS-NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        27 ~fAtvG~-~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      .+++.+. +.|.||++...   +.++.+..  ....+..  ++.+    ..+|++|+.+|.||
T Consensus       190 ~l~~~~~dg~i~i~d~~~~---~~~~~~~~--~~~~v~~--~~~~----~~~l~sg~~dg~i~  241 (293)
T d1p22a2         190 LVVSGSSDNTIRLWDIECG---ACLRVLEG--HEELVRC--IRFD----NKRIVSGAYDGKIK  241 (293)
T ss_dssp             EEEEEETTSCEEEEETTTC---CEEEEECC--CSSCEEE--EECC----SSEEEEEETTSCEE
T ss_pred             eEEEecCCCEEEEEecccc---eeeeeecc--cceeeee--cccc----ceEEEEEcCCCEEE
Confidence            4555554 46999988765   44444422  2333332  3322    34699999999875

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.46  E-value=0.31  Score=31.17  Aligned_cols=46  Identities=17%  Similarity=0.291  Sum_probs=30.7

Q ss_pred             CeEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCce-EEEEecCCcEeC
Q psy8253          34 NRVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRP-LLAVAGSRAVIR   88 (88)
Q Consensus        34 ~~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~p-lLa~aG~~G~Ir   88 (88)
                      +.|.|++....   ++++.+.   .++..+.++|+.|   |+. ++++++.+|.|+
T Consensus       280 ~~v~v~d~~t~---~~~~~~~---~~~~~~~~a~spD---G~~~l~v~~~~d~~i~  326 (355)
T d2bbkh_         280 RFVVVLDAKTG---ERLAKFE---MGHEIDSINVSQD---EKPLLYALSTGDKTLY  326 (355)
T ss_dssp             EEEEEEETTTC---CEEEEEE---EEEEECEEEECCS---SSCEEEEEETTTTEEE
T ss_pred             CeEEEEeCCCC---cEEEEec---CCCCEEEEEEcCC---CCeEEEEEECCCCEEE
Confidence            45777776665   4555552   3456889999987   555 466777788774

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.43  E-value=1.3  Score=30.37  Aligned_cols=54  Identities=15%  Similarity=0.213  Sum_probs=39.2

Q ss_pred             CCEE-EEeCCC-eEEEEEcCCCCCeeEEEEEEcCCCCCceeEEEEeecCCCCceEEEEecCCcEeC
Q psy8253          25 PRIF-ATVGSN-RVSIYECPDGGSIKLLQCYADPDIEENFYTCAWSMDLESGRPLLAVAGSRAVIR   88 (88)
Q Consensus        25 ~~~f-AtvG~~-~v~Vy~~~~~~~~~~l~~~~d~d~~e~~y~~aWs~d~~~~~plLa~aG~~G~Ir   88 (88)
                      .++| +++..+ .|.|++....   ++++.+.   ..+..+.+++|.|   |+- |++++.+|.|+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~---~v~~~~~---~g~~~~~v~fSpD---G~~-l~~~s~dg~v~   86 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTY---EIKTVLD---TGYAVHISRLSAS---GRY-LFVIGRDGKVN   86 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTC---CEEEEEE---CSSCEEEEEECTT---SCE-EEEEETTSEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCC---cEEEEEe---CCCCeeEEEECCC---CCE-EEEEcCCCCEE
Confidence            3354 555555 7999998876   7777774   3567999999988   444 78888888764