Psyllid ID: psy8505

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MFTYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVRTSKG
Secondary Structure (PSIPRED)
cEEEEccccccccccccEEEEEEEccccccEEEEEEEcccccccccccccccccEEEEcHHHHHHHHHHcccEEEcccEEEEEccccEEEccEEEEEEEEEEcccccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccEEEEEEccccccEEEEEEccccccccccccccccccEEEEccHHHHHHHHHHHccccccccEEEEcccEEEEccEEEEEEEEEEccccEEEEEEEEEccc
Coil and Loop (DISEMBL)
mftyhagtgryahlgsqktvhvlhnseqpasVFSIlesgvpggpggpsgavknipVVADSLFDLLMMkmtpvytskkqtkveskgprfelgDFCVKLGSVSISQNFKAVLVEVRTSKG
Flexible Loop (DISEMBL)
mftyhagtgryahlgsQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTpvytskkqtkveskgprFELGDFCVKLGSVSISQNFKAVLVEVRTSKG
Low Complexity Region (SEG)
MFTYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILEsgvpggpggpsgAVKNIPVVADSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVRTSKG
Disordered region (IsUnstruct)
*********RYAHLG**KTVHVL*********F*I**************AVKNIPVVADSLFDLLMMKMTPVYT************RFELGDFCVKLGSVSISQNFKAVLVEV*****
Disordered Region (DISOPRED)
MFTY***T******GSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYTSKKQ**VESKGPRFELGDFCVKLGSVSISQNFKAVLVEVRTS**
Disordered Region (DISEMBL)
********GRYAHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYTS********KGPRFELGDFCVKLGSVSISQNFKAVLVEVRTSKG
Disordered Region (DISPRO)
MFTYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVRTS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVRTSKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q17LR9	219	Mediator of RNA polymeras	N/A	N/A	0.771	0.415	0.656	7e-33
Q7Q6Y4	218	Mediator of RNA polymeras	yes	N/A	0.771	0.417	0.647	5e-31
P91641	252	Mediator of RNA polymeras	yes	N/A	0.737	0.345	0.536	6e-25
Q9R0X0	212	Mediator of RNA polymeras	yes	N/A	0.805	0.448	0.353	2e-12
Q9H944	212	Mediator of RNA polymeras	yes	N/A	0.805	0.448	0.353	2e-12
Q4R4S8	212	Mediator of RNA polymeras	N/A	N/A	0.805	0.448	0.353	2e-12
Q5XIE9	212	Mediator of RNA polymeras	no	N/A	0.805	0.448	0.353	2e-12
Q5ZKY9	211	Mediator of RNA polymeras	yes	N/A	0.830	0.464	0.330	5e-12
Q6DBX1	212	Mediator of RNA polymeras	yes	N/A	0.813	0.452	0.392	7e-12
Q6NTV8	211	Mediator of RNA polymeras	N/A	N/A	0.822	0.459	0.339	5e-11

>sp|Q17LR9|MED20_AEDAE Mediator of RNA polymerase II transcription subunit 20 OS=Aedes aegypti GN=MED20 PE=3 SV=1

 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 80/102 (78%), Gaps = 11/102 (10%)

Query: 13  HLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPV 72
            +G+ KTVH+LHNSEQPASVFSIL++G            K IP+V D LFDLLM +++PV
Sbjct: 50  QIGATKTVHILHNSEQPASVFSILDTGT-----------KQIPLVTDGLFDLLMTRISPV 98

Query: 73  YTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           YTSKKQTK+ESKGPRFE GDF +KLGSV++SQNFK VLVEV 
Sbjct: 99  YTSKKQTKIESKGPRFEFGDFLIKLGSVTMSQNFKGVLVEVE 140

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Aedes aegypti (taxid: 7159)

>sp|Q7Q6Y4|MED20_ANOGA Mediator of RNA polymerase II transcription subunit 20 OS=Anopheles gambiae GN=MED20 PE=3 SV=6

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 76/102 (74%), Gaps = 11/102 (10%)

Query: 13  HLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPV 72
            LG  KTVH+LHNSEQPASVFSIL++G            K IP+V D LFDLLM ++ P 
Sbjct: 49  QLGPPKTVHILHNSEQPASVFSILDTGT-----------KQIPLVTDGLFDLLMTRIAPA 97

Query: 73  YTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           YTSKKQTK+ESKG RFE GDF +KLGSV++SQNFK VLVEV 
Sbjct: 98  YTSKKQTKIESKGQRFEFGDFVIKLGSVTMSQNFKGVLVEVE 139

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|P91641|MED20_DROME Mediator of RNA polymerase II transcription subunit 20 OS=Drosophila melanogaster GN=MED20 PE=1 SV=2

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 72/97 (74%), Gaps = 10/97 (10%)

Query: 18  KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYTSKK 77
           + VHVLHNSE PAS FSI+++G            K + +VAD++FDLLM+KMT  +TSKK
Sbjct: 59  RAVHVLHNSEYPASTFSIIDNGTG----------KQVAIVADNIFDLLMLKMTNTFTSKK 108

Query: 78  QTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           QTK+ES+G RFE GDF +KLGSV++ ++FK +L+E+ 
Sbjct: 109 QTKIESRGARFEYGDFVIKLGSVTMMEHFKGILIEIE 145

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Required for activated transcription of the MtnA gene.

Drosophila melanogaster (taxid: 7227)

>sp|Q9R0X0|MED20_MOUSE Mediator of RNA polymerase II transcription subunit 20 OS=Mus musculus GN=Med20 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 21/116 (18%)

Query: 3   TYHAGTGRYAHLGSQ----KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVA 58
           TYH      + LGSQ    K ++V+HNSE P S F++ E+G       P        ++A
Sbjct: 45  TYHTAA---STLGSQGQAGKLMYVMHNSEYPLSCFALFENG-------PC-------LIA 87

Query: 59  DSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           D+ FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEV 
Sbjct: 88  DTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVE 143

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q9H944|MED20_HUMAN Mediator of RNA polymerase II transcription subunit 20 OS=Homo sapiens GN=MED20 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 21/116 (18%)

Query: 3   TYHAGTGRYAHLGSQ----KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVA 58
           TYH      + LGSQ    K ++V+HNSE P S F++ E+G       P        ++A
Sbjct: 45  TYHTAA---STLGSQGQTGKLMYVMHNSEYPLSCFALFENG-------PC-------LIA 87

Query: 59  DSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           D+ FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEV 
Sbjct: 88  DTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVE 143

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q4R4S8|MED20_MACFA Mediator of RNA polymerase II transcription subunit 20 OS=Macaca fascicularis GN=MED20 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 21/116 (18%)

Query: 3   TYHAGTGRYAHLGSQ----KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVA 58
           TYH      + LGSQ    K ++V+HNSE P S F++ E+G       P        ++A
Sbjct: 45  TYHTAA---STLGSQGQTGKLMYVMHNSEYPLSCFALFENG-------PC-------LIA 87

Query: 59  DSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           D+ FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEV 
Sbjct: 88  DTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVE 143

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Macaca fascicularis (taxid: 9541)

>sp|Q5XIE9|MED20_RAT Mediator of RNA polymerase II transcription subunit 20 OS=Rattus norvegicus GN=Med20 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 21/116 (18%)

Query: 3   TYHAGTGRYAHLGSQ----KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVA 58
           TYH      + LGSQ    K ++V+HNSE P S F++ E+G       P        ++A
Sbjct: 45  TYHTAA---STLGSQGQAGKLMYVMHNSEYPLSCFALFENG-------PC-------LIA 87

Query: 59  DSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           D+ FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEV 
Sbjct: 88  DTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVE 143

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Rattus norvegicus (taxid: 10116)

>sp|Q5ZKY9|MED20_CHICK Mediator of RNA polymerase II transcription subunit 20 OS=Gallus gallus GN=MED20 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 14/112 (12%)

Query: 3   TYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLF 62
           TYH      +   + K ++V+HNSE P S F++ E+G       P        ++AD+ F
Sbjct: 45  TYHTAAAISSQGQTGKLMYVMHNSEYPLSCFALFENG-------PC-------LIADANF 90

Query: 63  DLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           D LM+K+   + + K  K+ES+G R++  DF VK+G+V++  + + + VEV 
Sbjct: 91  DTLMVKLKGFFQNAKANKIESRGTRYQYCDFLVKVGTVTMGPSARGISVEVE 142

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Gallus gallus (taxid: 9031)

>sp|Q6DBX1|MED20_DANRE Mediator of RNA polymerase II transcription subunit 20 OS=Danio rerio GN=med20 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 16/112 (14%)

Query: 3   TYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLF 62
           TYHA TG      S K ++V+HNSE P S  ++ E    GGPG          + AD+ F
Sbjct: 45  TYHA-TGNATGQPS-KLLYVMHNSEAPLSCMALFE----GGPG----------LSADANF 88

Query: 63  DLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           D+LM+K+   + + K  KVES+G R+   DF VK+G+V++S + + + VEV 
Sbjct: 89  DVLMIKLKSHFQNAKGHKVESRGTRYRYCDFLVKIGTVAMSSSARGISVEVE 140

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|Q6NTV8|MED20_XENLA Mediator of RNA polymerase II transcription subunit 20 OS=Xenopus laevis GN=med20 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 15/112 (13%)

Query: 3   TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSL 61
           TYH         G   K ++V+HNSE P S F++ E+G       P        +VAD  
Sbjct: 45  TYHTAGASMGTPGQAGKLLYVMHNSEYPLSTFALFENG-------PC-------LVADLN 90

Query: 62  FDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
            D+LM+K+   + + K  K+E++G R++  DF VK+G+V++ Q+ + + VEV
Sbjct: 91  LDVLMVKLKGFFQNAKANKMETRGTRYQYCDFLVKIGTVTVGQSGRGITVEV 142

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
322797098	110	hypothetical protein SINV_00081 [Solenop	0.728	0.781	0.721	5e-33
357608104	157	putative mediator complex subunit [Danau	0.762	0.573	0.683	1e-32
156543437	206	PREDICTED: mediator of RNA polymerase II	0.771	0.441	0.666	2e-32
307209851	187	Mediator of RNA polymerase II transcript	0.771	0.486	0.686	3e-32
242015746	206	mediator complex subunit, putative [Pedi	0.762	0.436	0.683	3e-31
157116862	219	hypothetical protein AaeL_AAEL001260 [Ae	0.771	0.415	0.656	3e-31
189237999	206	PREDICTED: similar to Mediator complex s	0.771	0.441	0.666	4e-31
170032200	217	trf-proximal protein [Culex quinquefasci	0.771	0.419	0.666	5e-31
332373226	211	unknown [Dendroctonus ponderosae]	0.779	0.436	0.650	2e-30
340713978	205	PREDICTED: mediator of RNA polymerase II	0.762	0.439	0.656	2e-29

>gi|322797098|gb|EFZ19377.1| hypothetical protein SINV_00081 [Solenopsis invicta]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 81/97 (83%), Gaps = 11/97 (11%)

Query: 17  QKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYTSK 76
           Q+TVHVLHNSEQPASVF++LESG            K +P++AD LFDLLMMKMT +YTSK
Sbjct: 1   QRTVHVLHNSEQPASVFALLESGS-----------KVVPLIADGLFDLLMMKMTNIYTSK 49

Query: 77  KQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
           KQTK+ESKGPRFE+GDFCVKLGSV++SQNFK VLVEV
Sbjct: 50  KQTKIESKGPRFEIGDFCVKLGSVTMSQNFKGVLVEV 86

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357608104|gb|EHJ65827.1| putative mediator complex subunit [Danaus plexippus]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/101 (68%), Positives = 82/101 (81%), Gaps = 11/101 (10%)

Query: 14  LGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVY 73
           +GS KTVH+LHNSEQPASVFSILESG            KNI V+AD LFDLLMMK++  Y
Sbjct: 1   MGSTKTVHILHNSEQPASVFSILESGT-----------KNIHVIADGLFDLLMMKLSQHY 49

Query: 74  TSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           TSKKQTK+ESKGP+FELGDFC+KLGSV+++QNFK +L+EV 
Sbjct: 50  TSKKQTKIESKGPKFELGDFCIKLGSVTMNQNFKGILIEVE 90

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543437|ref|XP_001600958.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20-like [Nasonia vitripennis]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 82/102 (80%), Gaps = 11/102 (10%)

Query: 13  HLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPV 72
            LG Q+TVHVLHNSEQPASVF+ILESG            K +P++AD LFDLLM+KMT +
Sbjct: 51  QLGQQRTVHVLHNSEQPASVFAILESGN-----------KMVPLIADGLFDLLMLKMTNI 99

Query: 73  YTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           YT+KKQTK+E KGPRFELGDFC+KLG+V+++QNFK VLVEV 
Sbjct: 100 YTNKKQTKIECKGPRFELGDFCIKLGTVNMTQNFKGVLVEVE 141

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209851|gb|EFN86630.1| Mediator of RNA polymerase II transcription subunit 20 [Harpegnathos saltator]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 82/102 (80%), Gaps = 11/102 (10%)

Query: 13  HLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPV 72
            +G Q+TVHVLHNSEQPASVF+ILESG            K +P++AD LFDLLM+KM  +
Sbjct: 32  EVGIQRTVHVLHNSEQPASVFAILESGN-----------KIVPLIADGLFDLLMLKMPSI 80

Query: 73  YTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           Y+SKKQTK+ESKGPRFELGDFCVKLGSV++SQNFK VLVEV 
Sbjct: 81  YSSKKQTKIESKGPRFELGDFCVKLGSVTMSQNFKGVLVEVE 122

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015746|ref|XP_002428508.1| mediator complex subunit, putative [Pediculus humanus corporis] gi|212513142|gb|EEB15770.1| mediator complex subunit, putative [Pediculus humanus corporis]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/101 (68%), Positives = 80/101 (79%), Gaps = 11/101 (10%)

Query: 14  LGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVY 73
           LGSQKT+HV HNSEQPA+VFSILE+G            K + +VAD LFDLLM+KMT +Y
Sbjct: 52  LGSQKTLHVFHNSEQPATVFSILETGT-----------KTVSLVADGLFDLLMLKMTSIY 100

Query: 74  TSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           TSKKQTK ESKG RFELGDFCVKLG+V++SQ+FK VLVEV 
Sbjct: 101 TSKKQTKCESKGSRFELGDFCVKLGNVTMSQSFKGVLVEVE 141

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116862|ref|XP_001652880.1| hypothetical protein AaeL_AAEL001260 [Aedes aegypti] gi|122118710|sp|Q17LR9.1|MED20_AEDAE RecName: Full=Mediator of RNA polymerase II transcription subunit 20; AltName: Full=Mediator complex subunit 20 gi|108883408|gb|EAT47633.1| AAEL001260-PA [Aedes aegypti]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 80/102 (78%), Gaps = 11/102 (10%)

Query: 13  HLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPV 72
            +G+ KTVH+LHNSEQPASVFSIL++G            K IP+V D LFDLLM +++PV
Sbjct: 50  QIGATKTVHILHNSEQPASVFSILDTGT-----------KQIPLVTDGLFDLLMTRISPV 98

Query: 73  YTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           YTSKKQTK+ESKGPRFE GDF +KLGSV++SQNFK VLVEV 
Sbjct: 99  YTSKKQTKIESKGPRFEFGDFLIKLGSVTMSQNFKGVLVEVE 140

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237999|ref|XP_001812951.1| PREDICTED: similar to Mediator complex subunit 20 CG18780-PA [Tribolium castaneum] gi|270006649|gb|EFA03097.1| hypothetical protein TcasGA2_TC013006 [Tribolium castaneum]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 80/102 (78%), Gaps = 11/102 (10%)

Query: 12  AHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTP 71
           A LG Q+TVHVLHNSEQPA+VFSILE+G            K IP+  D LFDLLMMKM+ 
Sbjct: 49  AALGHQRTVHVLHNSEQPATVFSILETGQ-----------KTIPLATDGLFDLLMMKMSG 97

Query: 72  VYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
            Y+SKKQTK ESKGPR+E+GDFCVKLG+V++SQNF+ VLVEV
Sbjct: 98  FYSSKKQTKAESKGPRYEIGDFCVKLGTVTVSQNFRGVLVEV 139

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032200|ref|XP_001843970.1| trf-proximal protein [Culex quinquefasciatus] gi|167872086|gb|EDS35469.1| trf-proximal protein [Culex quinquefasciatus]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 79/102 (77%), Gaps = 11/102 (10%)

Query: 13  HLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPV 72
            +G  KTVH+LHNSEQPASVFSIL+SG            K IP+V D LFDLLM +++PV
Sbjct: 50  QIGPPKTVHILHNSEQPASVFSILDSGA-----------KQIPLVTDGLFDLLMARISPV 98

Query: 73  YTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           YTSKKQTK+ESKGPRFE GDF +KLGSV++SQNFK VLVEV 
Sbjct: 99  YTSKKQTKIESKGPRFEFGDFLIKLGSVTMSQNFKGVLVEVE 140

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373226|gb|AEE61754.1| unknown [Dendroctonus ponderosae]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 78/103 (75%), Gaps = 11/103 (10%)

Query: 12  AHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTP 71
           A LG Q+TVHVLHNSEQPA+VFS+L++G            K IP+V D LFDLLMMKM+ 
Sbjct: 49  ASLGHQRTVHVLHNSEQPATVFSLLDTGT-----------KIIPLVTDGLFDLLMMKMSS 97

Query: 72  VYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
            Y  KKQTK ESKGPR+E+GDFCVKLGSVS+S NFK +LVEV 
Sbjct: 98  FYQCKKQTKAESKGPRYEIGDFCVKLGSVSVSSNFKGILVEVE 140

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713978|ref|XP_003395510.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20-like isoform 1 [Bombus terrestris]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 80/102 (78%), Gaps = 12/102 (11%)

Query: 13  HLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPV 72
            LG+Q+T+HVLHNSEQPAS F+ILESG            K +P++AD LFDLLM KM+ V
Sbjct: 51  QLGAQRTLHVLHNSEQPASAFAILESGN-----------KVVPLIADGLFDLLMYKMSSV 99

Query: 73  YTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
           YT+K Q K+ESKGPRFE+GDFCVKLGSV+I+QNFK VLVEV 
Sbjct: 100 YTNKMQ-KMESKGPRFEIGDFCVKLGSVTINQNFKGVLVEVE 140

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
FB|FBgn0013531	252	MED20 "Mediator complex subuni	0.771	0.361	0.519	1e-22
UNIPROTKB|B7ZBQ3	145	MED20 "Mediator of RNA polymer	0.822	0.668	0.342	8.2e-12
UNIPROTKB|A6H7I4	212	MED20 "MED20 protein" [Bos tau	0.813	0.452	0.345	2.2e-11
UNIPROTKB|F1PC21	212	MED20 "Uncharacterized protein	0.813	0.452	0.336	2.8e-11
UNIPROTKB|A6PVP4	140	MED20 "Mediator of RNA polymer	0.813	0.685	0.336	2.8e-11
UNIPROTKB|Q9H944	212	MED20 "Mediator of RNA polymer	0.813	0.452	0.336	2.8e-11
MGI|MGI:1929648	212	Med20 "mediator complex subuni	0.813	0.452	0.336	2.8e-11
RGD|1306415	212	Med20 "mediator complex subuni	0.813	0.452	0.336	2.8e-11
UNIPROTKB|F1LN44	211	LOC100360472 "Protein LOC10036	0.813	0.454	0.336	2.8e-11
UNIPROTKB|Q5ZKY9	211	MED20 "Mediator of RNA polymer	0.813	0.454	0.330	9.4e-11

FB|FBgn0013531 MED20 "Mediator complex subunit 20" [Drosophila melanogaster (taxid:7227)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 53/102 (51%), Positives = 73/102 (71%)

Query:    13 HLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIPVVADSLFDLLMMKMTP 71
             H G+  + VHVLHNSE PAS FSI++              K + +VAD++FDLLM+KMT 
Sbjct:    53 HNGAPGRAVHVLHNSEYPASTFSIIDNGTG----------KQVAIVADNIFDLLMLKMTN 102

Query:    72 VYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
              +TSKKQTK+ES+G RFE GDF +KLGSV++ ++FK +L+E+
Sbjct:   103 TFTSKKQTKIESRGARFEYGDFVIKLGSVTMMEHFKGILIEI 144

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA;ISS

GO:0016592 "mediator complex" evidence=ISS;IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS;NAS

GO:0006351 "transcription, DNA-dependent" evidence=ISS;NAS

UNIPROTKB|B7ZBQ3 MED20 "Mediator of RNA polymerase II transcription subunit 20" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 39/114 (34%), Positives = 64/114 (56%)

Query:     3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
             TYH         G   K ++V+HNSE P S F++ E               N P ++AD+
Sbjct:    45 TYHTAASTLGSQGQTGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 89

Query:    61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVR 114
              FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEVR
Sbjct:    90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEVR 143

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

UNIPROTKB|A6H7I4 MED20 "MED20 protein" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 39/113 (34%), Positives = 63/113 (55%)

Query:     3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
             TYH         G   K ++V+HNSE P S F++ E               N P +VAD+
Sbjct:    45 TYHTAASTLGSQGQAGKLMYVMHNSEYPLSCFALFE---------------NGPCLVADT 89

Query:    61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
              FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEV
Sbjct:    90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 142

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|F1PC21 MED20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 38/113 (33%), Positives = 63/113 (55%)

Query:     3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
             TYH         G   K ++V+HNSE P S F++ E               N P ++AD+
Sbjct:    45 TYHTAASTLGSQGQAGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 89

Query:    61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
              FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEV
Sbjct:    90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 142

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|A6PVP4 MED20 "Mediator of RNA polymerase II transcription subunit 20" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 38/113 (33%), Positives = 63/113 (55%)

Query:     3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
             TYH         G   K ++V+HNSE P S F++ E               N P ++AD+
Sbjct:    37 TYHTAASTLGSQGQTGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 81

Query:    61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
              FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEV
Sbjct:    82 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 134

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

UNIPROTKB|Q9H944 MED20 "Mediator of RNA polymerase II transcription subunit 20" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 38/113 (33%), Positives = 63/113 (55%)

Query:     3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
             TYH         G   K ++V+HNSE P S F++ E               N P ++AD+
Sbjct:    45 TYHTAASTLGSQGQTGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 89

Query:    61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
              FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEV
Sbjct:    90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 142

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=NAS

GO:0003899 "DNA-directed RNA polymerase activity" evidence=NAS

GO:0006351 "transcription, DNA-dependent" evidence=NAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1929648 Med20 "mediator complex subunit 20" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 38/113 (33%), Positives = 63/113 (55%)

Query:     3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
             TYH         G   K ++V+HNSE P S F++ E               N P ++AD+
Sbjct:    45 TYHTAASTLGSQGQAGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 89

Query:    61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
              FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEV
Sbjct:    90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 142

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

GO:0035914 "skeletal muscle cell differentiation" evidence=IMP

RGD|1306415 Med20 "mediator complex subunit 20" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 38/113 (33%), Positives = 63/113 (55%)

Query:     3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
             TYH         G   K ++V+HNSE P S F++ E               N P ++AD+
Sbjct:    45 TYHTAASTLGSQGQAGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 89

Query:    61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
              FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEV
Sbjct:    90 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 142

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA;ISO

GO:0035914 "skeletal muscle cell differentiation" evidence=ISO

UNIPROTKB|F1LN44 LOC100360472 "Protein LOC100360472" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 38/113 (33%), Positives = 63/113 (55%)

Query:     3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADS 60
             TYH         G   K ++V+HNSE P S F++ E               N P ++AD+
Sbjct:    44 TYHTAASTLGSQGQAGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADT 88

Query:    61 LFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
              FD+LM+K+   + S K +K+E++G R++  DF VK+G+V++  + + + VEV
Sbjct:    89 NFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTVTMGPSARGISVEV 141

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

UNIPROTKB|Q5ZKY9 MED20 "Mediator of RNA polymerase II transcription subunit 20" [Gallus gallus (taxid:9031)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 37/112 (33%), Positives = 62/112 (55%)

Query:     3 TYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILEXXXXXXXXXXXXAVKNIP-VVADSL 61
             TYH      +   + K ++V+HNSE P S F++ E               N P ++AD+ 
Sbjct:    45 TYHTAAAISSQGQTGKLMYVMHNSEYPLSCFALFE---------------NGPCLIADAN 89

Query:    62 FDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
             FD LM+K+   + + K  K+ES+G R++  DF VK+G+V++  + + + VEV
Sbjct:    90 FDTLMVKLKGFFQNAKANKIESRGTRYQYCDFLVKVGTVTMGPSARGISVEV 141

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P91641	MED20_DROME	No assigned EC number	0.5360	0.7372	0.3452	yes	N/A
Q7Q6Y4	MED20_ANOGA	No assigned EC number	0.6470	0.7711	0.4174	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	118
pfam08612	197	pfam08612, Med20, TATA-binding related factor (TRF	5e-23

>gnl|CDD|219933 pfam08612, Med20, TATA-binding related factor (TRF) of subunit 20 of Mediator complex

 Score = 87.8 bits (218), Expect = 5e-23
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 13/96 (13%)

Query: 18  KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYTSKK 77
           K ++VL  SE P S FSI+ +                 +VADS F LLM K+   +T ++
Sbjct: 59  KLLYVLSLSEHPNSTFSIINNTAI------------TTLVADSFFQLLMEKLQSFWTQRQ 106

Query: 78  QTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEV 113
             K E  G  +ELGDF V++G+V  +  F+ +LVEV
Sbjct: 107 TVKGEGGGT-YELGDFRVRVGNVFQTTTFRGILVEV 141

This family of proteins is related to TATA-binding protein (TBP). TBP is a highly conserved RNA polymerase II general transcription factor that binds to the core promoter and initiates assembly of the preinitiation complex. Human TRF has been shown to associate with an RNA polymerase II-SRB complex. This Med20 subunit of Mediator is found in the non-essential part of the head. Length = 197

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
KOG4309|consensus	217		100.0
PF08612	225	Med20: TATA-binding related factor (TRF) of subuni	99.97
KOG1383|consensus	491		94.48

>KOG4309|consensus

Probab=100.00  E-value=1.5e-35  Score=231.88  Aligned_cols=103  Identities=39%  Similarity=0.656  Sum_probs=97.1

Q ss_pred             eEeecCccccccCCC-cEEEEEecCCCCCeEEEEEcCCCCCCCCCCCCCceeeeeeecchHHHHHHhcccceeeccceEE
Q psy8505           3 TYHAGTGRYAHLGSQ-KTVHVLHNSEQPASVFSILESGVPGGPGGPSGAVKNIPVVADSLFDLLMMKMTPVYTSKKQTKV   81 (118)
Q Consensus         3 ty~~~~~~~~~~g~~-r~~~~l~~se~P~s~F~i~~~~~~~~~~~~~~~~k~~~l~aD~~fd~im~kL~s~y~~r~~~ki   81 (118)
                      |||++++  .+-|+| |.+|||||||||+|+|+|++|++          +|+++++||+.||+||.||++++++++++||
T Consensus        45 tF~~~~~--~~~g~~g~~~~VmHnSeyP~STFSI~~ngT----------fKks~~VaD~~FDLlm~Kl~~~f~s~ka~KI  112 (217)
T KOG4309|consen   45 TFHTAAS--TLGGQTGKLMYVMHNSEYPLSTFSIFENGT----------FKKSCLVADTNFDLLMVKLKGFFQSAKASKI  112 (217)
T ss_pred             ccCCCCC--CCCCCcCceEEEEecCCCCcceeEEecCCC----------cceeEEEecCCcceeehhhccceeeccccce
Confidence            6788776  244678 99999999999999999999996          7899999999999999999999999999999


Q ss_pred             EEccceeEeCCeEEEEeeeEecCcccEEEEEEEEeC
Q psy8505          82 ESKGPRFELGDFCVKLGSVSISQNFKAVLVEVRTSK  117 (118)
Q Consensus        82 e~~G~~YelGDF~VrvG~Vt~~~~~rGilvEVEY~~  117 (118)
                      |++|.||++|||.||||+|+||+.+|||+|||||.+
T Consensus       113 E~rG~ry~Y~Df~IkvGtvTmg~tvKGi~vEIEY~p  148 (217)
T KOG4309|consen  113 ETRGTRYQYCDFLIKVGTVTMGPTVKGISVEIEYGP  148 (217)
T ss_pred             eeccceeeecceEEEEcceEeccccceEEEEEeeCC
Confidence            999999999999999999999999999999999975

>PF08612 Med20: TATA-binding related factor (TRF) of subunit 20 of Mediator complex; InterPro: IPR013921 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=99.97  E-value=3.3e-30  Score=201.38  Aligned_cols=112  Identities=34%  Similarity=0.561  Sum_probs=85.9

Q ss_pred             eEeecCcccc---ccCCCcEEEEEecCCCCCeEEEEEcCCCCCCCCCCC---CCceee-eeeecchHHHHHHhcccceee
Q psy8505           3 TYHAGTGRYA---HLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGPS---GAVKNI-PVVADSLFDLLMMKMTPVYTS   75 (118)
Q Consensus         3 ty~~~~~~~~---~~g~~r~~~~l~~se~P~s~F~i~~~~~~~~~~~~~---~~~k~~-~l~aD~~fd~im~kL~s~y~~   75 (118)
                      +|+..+....   ...+||+||+||+||+|++||+|+++++.+.+.++.   +-++.+ ++++|+.|++||.||+++|++
T Consensus        46 ~yr~~~~~~p~~~~~~~~r~~~~L~~S~~p~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~i~~KL~~~w~~  125 (225)
T PF08612_consen   46 TYRDTPSSLPASQPPSQPRYMYVLSLSEYPNSTFIIINNGPAKTTTNSQTNSHLMNGCPTLVADSFFDLIMSKLQSLWTQ  125 (225)
T ss_dssp             EEEE-SSS------SSS-SEEEEEEEESSSEEEEEEETTEEEEEES-GGGHHHHHTTSS-S-B--HHHHHHHHSTTTEEE
T ss_pred             EecCCCCCCCcccccccccEEEEEecccCCCcEEEEEcCCCcccccccCCccceeccccccccChHHHHHHHHHHhhhhh
Confidence            6777776332   124689999999999999999999998522222210   001222 699999999999999999999


Q ss_pred             ccceEEEEccceeEeCCeEEEEeeeEecCcccEEEEEEEE
Q psy8505          76 KKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVRT  115 (118)
Q Consensus        76 r~~~kie~~G~~YelGDF~VrvG~Vt~~~~~rGilvEVEY  115 (118)
                      |++.|+|.+|. ||+|||+||+|+|++++++|||||||||
T Consensus       126 Rq~~kie~~~~-YelgDf~VRvg~v~~~~~~rGilvEVEy  164 (225)
T PF08612_consen  126 RQTIKIEGGGT-YELGDFTVRVGNVFQGQSFRGILVEVEY  164 (225)
T ss_dssp             EEEEEEESEEE-EEETTEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cEEEEEeeeeE-EEECCEEEEEEEEEECCCCcEEEEEEEE
Confidence            99999999999 9999999999999999999999999999

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Proteins in this entry are subunit Med20 of the Mediator complex, and is found in the non-essential part of the head []. and related to the TATA-binding protein (TBP). TBP is a highly conserved RNA polymerase II general transcription factor that binds to the core promoter and initiates assembly of the pre-initiation complex. Human TRF has been shown to associate with an RNA polymerase II-SRB complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZS_C 3RJ1_M 2HZM_G.

>KOG1383|consensus

Probab=94.48  E-value=0.011  Score=52.38  Aligned_cols=63  Identities=17%  Similarity=0.107  Sum_probs=56.1

Q ss_pred             eeeeeeecchHHHHHHhcccceeeccceEEEEccceeEeCCeEEEEeee--EecCcccEEEEEEEEeC
Q psy8505          52 KNIPVVADSLFDLLMMKMTPVYTSKKQTKVESKGPRFELGDFCVKLGSV--SISQNFKAVLVEVRTSK  117 (118)
Q Consensus        52 k~~~l~aD~~fd~im~kL~s~y~~r~~~kie~~G~~YelGDF~VrvG~V--t~~~~~rGilvEVEY~~  117 (118)
                      |.+....|..-++++++++. |.+...  ++.++..|+.|||.+++|.+  ...++.+|++++++|.+
T Consensus       166 k~I~~p~iv~~~~v~~a~eK-~a~yf~--v~l~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p  230 (491)
T KOG1383|consen  166 KGIDKPNIVTPQNVHAAFEK-AARYFE--VELREVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFP  230 (491)
T ss_pred             cCCCCccccchHHHHHHHHH-HHhhEE--EEEEeeeccccceEecHHHHHHHhccceEEEEEEcCCCC
Confidence            46778888889999999998 777775  99999999999999999999  77799999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2hzm_A	212	RNA polymerase II mediator complex subunit 20; bet	99.94

>2hzm_A RNA polymerase II mediator complex subunit 20; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 3rj1_F 2hzs_A

Probab=99.94  E-value=1.5e-26  Score=182.12  Aligned_cols=112  Identities=13%  Similarity=0.199  Sum_probs=89.6

Q ss_pred             eEeecCccccccCCCcEEEEEecCCCCCeEEEEEcCCCCCCCCCC--CCCc----eeeeeeecchHHHHH-Hhcccceee
Q psy8505           3 TYHAGTGRYAHLGSQKTVHVLHNSEQPASVFSILESGVPGGPGGP--SGAV----KNIPVVADSLFDLLM-MKMTPVYTS   75 (118)
Q Consensus         3 ty~~~~~~~~~~g~~r~~~~l~~se~P~s~F~i~~~~~~~~~~~~--~~~~----k~~~l~aD~~fd~im-~kL~s~y~~   75 (118)
                      |||+.+.+.+.. .+|.||+||+|++|.+|| +++++.+.-...+  +-|.    +-.++.+|..||.+| .||+++|+.
T Consensus        43 ty~~~~~s~p~~-~sk~lytl~~S~~p~st~-li~~~sa~v~~~~~~~ip~~~~~~G~~~~~~~~FD~ll~~KL~siwtq  120 (212)
T 2hzm_A           43 TYRCSIKNLPAD-VSKLMYSITFHHHGRQTV-LIKDNSAMVTTAAAADIPPALVFNGSSTGVPESIDTILSSKLSNIWMQ  120 (212)
T ss_dssp             EEEECSCCC-----CCEEEEEEEESSSEEEE-EEETTEEEEEECCGGGSCHHHHHTTSSCSCCCCHHHHHHHHSTTTEEE
T ss_pred             EecCCcccCCCC-CceEEEEEeccCCCceEE-EEeCCcceeecccccccchhhhcCCccccCCccHHHHHHHHHHHHHhH
Confidence            899998833311 579999999999999999 9998310000000  0000    113799999999999 999999999


Q ss_pred             ccceEEEEccceeEeCCeEEEEeeeEecCcccEEEEEEEEeC
Q psy8505          76 KKQTKVESKGPRFELGDFCVKLGSVSISQNFKAVLVEVRTSK  117 (118)
Q Consensus        76 r~~~kie~~G~~YelGDF~VrvG~Vt~~~~~rGilvEVEY~~  117 (118)
                      |++.|.| .|.+|++|||+||+|+|++++++||++|||||++
T Consensus       121 rq~iKge-~G~~Y~~~df~VR~~Nvf~~~~fKGlLiEiEy~~  161 (212)
T 2hzm_A          121 RQLIKGD-AGETLILDGLTVRLVNLFSSTGFKGLLIELQADE  161 (212)
T ss_dssp             EEEEEEE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred             hhccccc-CCceeEecCEEEEEeeEEEcCcceeEEEEEEecC
Confidence            9999999 9999999999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00